# terms

id: MONDO:0007106
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anal sphincter dysplasia","secondary_identifiers":["MESH:C538254","UMLS:C1862936","OMIM:105563","MEDGEN:350794"],"synonyms":[{"name":"ASDP","type":"related"},{"name":"anal sphincter dysplasia","type":"exact"}],"termid":"MONDO:0007106","xrefs":{"Monarch":{"xref_id":"0007106"}}}


id: PBO:0049392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP binding protein 6 (putative)","termid":"PBO:0049392"}


id: PBO:0083258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; located in the telomeric region TEL08R","termid":"PBO:0083258"}


id: GO:0003139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that results in the delineation of a specific region of the lateral mesoderm into the area which will form the majority of the mesodermal component of the right ventricle, arterial pole (outflow tract) and venous pole (inflow tract).","definition_xrefs":["GOC:mtg_heart","GOC:rl","PMID:17276708"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart field specification","termid":"GO:0003128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"secondary heart field specification","synonyms":[{"name":"SHF specification","type":"exact"},{"name":"anterior heart field specification","type":"narrow"},{"name":"second heart field specification","type":"exact"}],"termid":"GO:0003139"}


id: GO:0099025
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete anchored component of postsynaptic membrane (obsolete GO:0099025)","termid":"GO:0099025"}


id: PBO:0085802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; copurifies with late Golgi vesicles containing the v-SNARE Tlg2p; PTM1 has a paralog, YHL017W, that arose from the whole genome duplication","termid":"PBO:0085802"}


id: PBO:0119674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial carrier, glycine","termid":"PBO:0119674"}


id: PBO:0079092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Tyr (anticodon GTA) 5-5","termid":"PBO:0079092"}


id: FYPO:0004068
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of the serine residue at position 5 within one or more copies of the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II occurs to a lower extent than normal.","definition_xrefs":["GO:0071620","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphorylation during vegetative growth","termid":"FYPO:0001838"},{"relation_name":"is_a","term_name":"abnormal RNA polymerase II C-terminal domain phosphorylation","termid":"FYPO:0007410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0002274","FYPO:0001985","FYPO:0002494","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased phosphorylation of RNA polymerase II C-terminal domain serine 5 residues during vegetative growth","synonyms":[{"name":"decreased phosphorylation of RNA polymerase II C-terminal domain serine 5 residues during mitotic cell cycle","type":"related"},{"name":"decreased phosphorylation of RNA polymerase II CTD serine 5 residues during vegetative growth","type":"exact"},{"name":"reduced phosphorylation of RNA polymerase II C-terminal domain serine 5 residues during vegetative growth","type":"exact"}],"termid":"FYPO:0004068"}


id: GO:0000957
data:
  {"annotated_genes":["SJAG_02383","SJAG_01948","SJAG_02526"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92260,92664,115898],"is_not":false,"summary":null,"term":"GO:0000957"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of RNA transcribed from the mitochondrial genome and occurring in the mitochondrion.","definition_xrefs":["GOC:krc","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial RNA metabolic process","termid":"GO:0000959"},{"relation_name":"is_a","term_name":"RNA catabolic process","termid":"GO:0006401"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01948":null,"SJAG_02383":null,"SJAG_02526":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mitochondrial RNA catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9836573"],"termid":"GO:0000957","terms_by_termid":{"GO:0000957":null}}


id: GO:1905714
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any mitochondrial calcium release that is involved in regulation of presynaptic cytosolic calcium ion concentration.","definition_xrefs":["PMID:26644474","GO_REF:0000060","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial calcium release involved in regulation of presynaptic cytosolic calcium ion concentration (obsolete GO:1905714)","synonyms":[{"name":"calcium ion transmembrane export from mitochondrion involved in regulation of presynaptic cytosolic calcium ion concentration","type":"exact"},{"name":"calcium ion transmembrane export from mitochondrion involved in regulation of presynaptic cytosolic calcium levels","type":"exact"},{"name":"mitochondrial calcium release involved in regulation of presynaptic cytosolic calcium levels","type":"exact"}],"termid":"GO:1905714"}


id: FYPO:0005764
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which replication fork pausing occurs to a greater extent than normal in regions containing G-quartet (G4) motifs.","definition_xrefs":["PomBase:mah","PMID:27611590","PMID:25471935"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased replication fork pausing","termid":"FYPO:0005763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0001320","FYPO:0000631","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased replication fork pausing at G4 motif","synonyms":[{"name":"increased replication fork pausing at G-quadruplex","type":"exact"},{"name":"increased replication fork pausing at G-quartet","type":"exact"},{"name":"increased replication fork pausing at G4 motif during mitotic cell cycle","type":"related"},{"name":"increased replication fork pausing at G4 motif during vegetative growth","type":"exact"}],"termid":"FYPO:0005764"}


id: GO:0001515
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Naturally occurring peptide that is an opioid (any non-alkaloid having an opiate-like effect that can be reversed by naloxone or other recognized morphine antagonist). These include Leu- and Met-enkephalin, dynorphin and neoendorphin, alpha, beta, gamma and delta endorphins formed from beta-lipotropin, various pronase-resistant peptides such as beta casamorphin, and other peptides whose opiate-like action seems to be indirect.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor ligand activity","termid":"GO:0048018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515","GO:0098772","GO:0140677"],"is_obsolete":false,"name":"opioid peptide activity","termid":"GO:0001515"}


id: PBO:0057716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1302-2","termid":"PBO:0057716"}


id: MONDO:0032781
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital hypotonia, epilepsy, developmental delay, and digital anomalies","secondary_identifiers":["MEDGEN:1674629","OMIM:618494","UMLS:C5193125"],"synonyms":[{"name":"CHEDDA","type":"related"},{"name":"CONGENITAL HYPOTONIA, EPILEPSY, DEVELOPMENTAL DELAY, AND DIGITAL ANOMALIES","type":"related"}],"termid":"MONDO:0032781","xrefs":{"Monarch":{"xref_id":"0032781"}}}


id: FYPO:0002272
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which a cell undergoes one or a few rounds of cell division before cells die, resulting in the formation a colony that contains only a few inviable cells that have abnormal morphology (i.e. size, shape, or structure). Up to 6 rounds of cell division (generating 64 cells) may be observed, but 3 divisions or fewer is more typical.","definition_xrefs":["PomBase:mah","PomBase:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable microcolony, abnormal cell morphology (obsolete FYPO:0002272)","synonyms":[{"name":"inviable microcolony, vegetative cells with abnormal morphology","type":"exact"}],"termid":"FYPO:0002272"}


id: PBO:0004782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterotrimeric G protein gamma subunit Git11","termid":"PBO:0004782"}


id: PBO:0030442
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_tRNA_methylation","termid":"PBO:0030442"}


id: MONDO:0015790
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Central diabetes insipidus (CDI) is a hypothalamus-pituitary disease characterized by polyuria and polydipsia due to a vasopressin (AVP) deficiency. It can be inherited or acquired (hereditary CDI and acquired CDI).","definition_xrefs":["Orphanet:178029"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pituitary deficiency","termid":"MONDO:0015127"},{"relation_name":"is_a","term_name":"neuroendocrine disorder","termid":"MONDO:0100070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"central diabetes insipidus","secondary_identifiers":["MEDGEN:146919","ICD10CM:E23.2","NANDO:2200324","UMLS:C0687720","icd11.foundation:1009553897","GARD:6015","NANDO:1200375","MedDRA:10068587","HP:0000863","DOID:0081055"],"synonyms":[{"name":"CDI","type":"exact"},{"name":"diabetes insipidus cranial type","type":"related"},{"name":"diabetes insipidus neurogenic","type":"related"},{"name":"diabetes insipidus neurohypophyseal","type":"related"},{"name":"neurogenic diabetes insipidus","type":"exact"}],"termid":"MONDO:0015790","xrefs":{"Monarch":{"xref_id":"0015790"}}}


id: MONDO:0016228
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Any of the forms of vascular neoplasm that have a rare incidence.","definition_xrefs":["MONDO:patterns/rare"],"gene_count":0,"genotype_count":0,"name":"obsolete rare vascular tumor (obsolete MONDO:0016228)","secondary_identifiers":["Orphanet:211237"],"synonyms":[{"name":"rare vascular neoplasm","type":"exact"}],"termid":"MONDO:0016228","xrefs":{"Monarch":{"xref_id":"0016228"}}}


id: PBO:0040588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BACE2 intronic transcript 1","termid":"PBO:0040588"}


id: MONDO:0060650
data:
  {"annotated_genes":["SJAG_04003"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86938],"is_not":false,"summary":null,"term":"MONDO:0060650"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Leber congenital amaurosis","termid":"MONDO:0018998"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04003":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0002320"],"is_obsolete":false,"name":"Leber congenital amaurosis with early-onset deafness","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4693498","DOID:0112240","MEDGEN:1646810","OMIM:617879"],"synonyms":[{"name":"LCAEOD","type":"related"},{"name":"Leber congenital amaurosis with early-onset deafness","type":"exact"}],"termid":"MONDO:0060650","terms_by_termid":{"MONDO:0060650":null},"xrefs":{"Monarch":{"xref_id":"0060650"}}}


id: MONDO:0044277
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete uric acid concentration, serum, quantitative trait locus 4 (obsolete MONDO:0044277)","secondary_identifiers":["OMIM:612671"],"synonyms":[{"name":"UAQTL4","type":"related"},{"name":"Uric acid concentration, serum, QTL4","type":"exact"},{"name":"gout susceptibility 4","type":"related"},{"name":"uric acid concentration, serum, quantitative trait locus 4","type":"related"}],"termid":"MONDO:0044277","xrefs":{"Monarch":{"xref_id":"0044277"}}}


id: PBO:0046291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epithelial membrane protein 1","termid":"PBO:0046291"}


id: PBO:0048263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polypeptide N-acetylgalactosaminyltransferase 1","termid":"PBO:0048263"}


id: PBO:0057351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 545","termid":"PBO:0057351"}


id: GO:0021875
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands that contributes to the self renewal of neuroblasts in the forebrain.","definition_xrefs":["GOC:dgh","GOC:cls","GO_REF:0000021","GOC:dph","GOC:jid","PMID:16226447"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor signaling pathway","termid":"GO:0008543"},{"relation_name":"part_of","term_name":"forebrain neuroblast division","termid":"GO:0021873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"fibroblast growth factor receptor signaling pathway involved in forebrain neuroblast division","synonyms":[{"name":"fibroblast growth factor receptor signalling pathway in forebrain neuroblast division","type":"exact"}],"termid":"GO:0021875"}


id: PATO:0000064
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000064 absolute percentage (obsolete PATO:0000064)","termid":"PATO:0000064"}


id: PBO:0042175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cellular communication network factor 5","termid":"PBO:0042175"}


id: SO:0001893
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A feature ablation whereby the deleted region includes a transcript feature.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_ablation","termid":"SO:0001879"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcript_ablation","secondary_identifiers":["http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"Jannovar:transcript_ablation","type":"exact"},{"name":"VEP:transcript_ablation","type":"exact"},{"name":"transcript ablation","type":"exact"}],"termid":"SO:0001893"}


id: GO:0033629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of cell adhesion mediated by integrin.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell adhesion","termid":"GO:0007162"},{"relation_name":"is_a","term_name":"regulation of cell adhesion mediated by integrin","termid":"GO:0033628"},{"relation_name":"negatively_regulates","term_name":"cell adhesion mediated by integrin","termid":"GO:0033627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"negative regulation of cell adhesion mediated by integrin","synonyms":[{"name":"negative regulation of cell adhesion mediated by integrin complex","type":"exact"}],"termid":"GO:0033629"}


id: MONDO:0024386
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A morphologic variant of large cell lung carcinoma characterized by a predominance of clear cells that may or may not contain glycogen.","definition_xrefs":["NCIT:C4451"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lung large cell carcinoma","termid":"MONDO:0003050"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"large cell lung carcinoma, clear cell variant","secondary_identifiers":["MEDGEN:317518","ONCOTREE:CCLC","UMLS:C1707407"],"synonyms":[{"name":"clear cell carcinoma of lung, large cell type","type":"exact"},{"name":"clear cell carcinoma of the lung","type":"related"},{"name":"clear cell carcinoma of the lung, large cell type","type":"exact"},{"name":"clear cell lung carcinoma, large cell type","type":"exact"},{"name":"large cell lung carcinoma, clear cell variant","type":"exact"}],"termid":"MONDO:0024386","xrefs":{"Monarch":{"xref_id":"0024386"}}}


id: PBO:0002534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MFS family transmembrane transporter Mfs1 (predicted)","termid":"PBO:0002534"}


id: PBO:0084329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Key component of the RAM signaling network; required for proper cell morphogenesis and cell separation after mitosis","termid":"PBO:0084329"}


id: PBO:0054187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1562","termid":"PBO:0054187"}


id: PBO:0070456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L3 pseudogene 13","termid":"PBO:0070456"}


id: PBO:0003349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial adenine nucleotide carrier Anc1","termid":"PBO:0003349"}


id: PBO:0034583
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_cell_cortex,_with_protein_mislocalized_to_vacuole,_during_vegetative_growth","termid":"PBO:0034583"}


id: MONDO:0024546
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary hypertrophic osteoarthropathy in which the cause of the disease is a mutation in the HPGD gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary hypertrophic osteoarthropathy","termid":"MONDO:0016620"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypertrophic osteoarthropathy, primary, autosomal recessive, 1","secondary_identifiers":["OMIM:259100","UMLS:C4551679","GARD:15216","MEDGEN:1641972"],"synonyms":[{"name":"Cranioosteoarthropathy","type":"related"},{"name":"Currarino idiopathic osteoarthropathy","type":"related"},{"name":"HPGD primary hypertrophic osteoarthropathy","type":"exact"},{"name":"PDP, autosomal recessive","type":"related"},{"name":"PHOAR1","type":"related"},{"name":"Pho, autosomal recessive","type":"related"},{"name":"Touraine-Solente-Gole syndrome","type":"related"},{"name":"familial idiopathic osteoarthropathy of childhood","type":"related"},{"name":"hypertrophic osteoarthropathy, primary, autosomal recessive 1","type":"exact"},{"name":"hypertrophic osteoarthropathy, primary, autosomal recessive, 1","type":"exact"},{"name":"pachydermoperiostosis, autosomal recessive","type":"related"},{"name":"primary hypertrophic osteoarthropathy caused by mutation in HPGD","type":"exact"}],"termid":"MONDO:0024546","xrefs":{"Monarch":{"xref_id":"0024546"}}}


id: MONDO:0009696
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The most common hereditary idiopathic generalized epilepsy syndrome and is characterized by myoclonic jerks of the upper limbs on awakening, generalized tonic-clonic seizures manifesting during adolescence and triggered by sleep deprivation, alcohol intake, and cognitive activities, and typical absence seizures (30% of cases).","definition_xrefs":["Orphanet:307"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"adolescence-adult electroclinical syndrome","termid":"MONDO:0000415"},{"relation_name":"excluded_subClassOf","term_name":"movement disorder","termid":"MONDO:0005395"},{"relation_name":"excluded_subClassOf","term_name":"familial partial epilepsy","termid":"MONDO:0017704"},{"relation_name":"excluded_subClassOf","term_name":"obsolete adolescent/adult-onset epilepsy syndrome (obsolete MONDO:0100030)","termid":"MONDO:0100030"},{"relation_name":"is_a","term_name":"myoclonic epilepsy","termid":"MONDO:0100577"},{"relation_name":"is_a","term_name":"variable-age onset idiopathic generalized epilepsy syndrome","termid":"MONDO:0800487"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"juvenile myoclonic epilepsy","secondary_identifiers":["DOID:4890","MESH:D020190","MEDGEN:78738","MedDRA:10071082","NCIT:C84796","OMIM:254770","OMIM:606904","SCTID:6204001","UMLS:C0270853","OMIMPS:254770","GARD:6808","icd11.foundation:1014397110","ICD9:345.10"],"synonyms":[{"name":"EJM","type":"exact"},{"name":"JME","type":"exact"},{"name":"Janz syndrome","type":"narrow"},{"name":"epilepsy, myoclonic juvenile","type":"exact"},{"name":"juvenile myoclonus epilepsy","type":"exact"},{"name":"myoclonic epilepsy, juvenile","type":"exact"},{"name":"myoclonic epilepsy, juvenile, 1","type":"exact"},{"name":"myoclonic epilepsy, juvenile, susceptibility to, 1","type":"narrow"},{"name":"petit mal, impulsive","type":"narrow"}],"termid":"MONDO:0009696","xrefs":{"Monarch":{"xref_id":"0009696"}}}


id: PBO:0085826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; FEAR network component that partially overlaps the function of SPO12 in promoting Cdc14p release from the nucleolus during early mitotic anaphase and mitotic exit; overexpression partially suppresses the meiotic defect of spo12; BNS1 has a paralog, SPO12, that arose from the whole genome duplication","termid":"PBO:0085826"}


id: GO:0043825
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + N(2)-succinyl-L-ornithine = N-succinyl-L-glutamate 5-semialdehyde + L-glutamate.","definition_xrefs":["EC:2.6.1.81","RHEA:16953"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"}],"interesting_parent_ids":["GO:0016769","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"succinylornithine transaminase activity","secondary_identifiers":["KEGG_REACTION:R04217","MetaCyc:SUCCORNTRANSAM-RXN"],"synonyms":[{"name":"2-N-succinyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity","type":"related"},{"name":"AstC","type":"related"},{"name":"N(2)-succinylornithine 5-aminotransferase activity","type":"related"},{"name":"N2-succinyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity","type":"exact"},{"name":"N2-succinylornithine 5-aminotransferase activity","type":"exact"},{"name":"SOAT","type":"related"},{"name":"succinyl ornithine transaminase activity","type":"exact"},{"name":"succinyl-ornithine transaminase activity","type":"related"},{"name":"succinylornithine aminotransferase activity","type":"broad"}],"termid":"GO:0043825"}


id: PBO:0030781
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_lead_ion","termid":"PBO:0030781"}


id: PBO:0084303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Iron-regulated transcriptional activator; activates genes involved in intracellular iron use and required for iron homeostasis and resistance to oxidative stress; AFT2 has a paralog, AFT1, that arose from the whole genome duplication","termid":"PBO:0084303"}


id: MONDO:0011470
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial hyperlipidemia","termid":"MONDO:0001336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"hyperlipidemia, combined, 2","secondary_identifiers":["UMLS:C1858308","MESH:C565766","OMIM:604499","MEDGEN:346879"],"synonyms":[{"name":"hyperlipidemia, combined, 2","type":"exact"},{"name":"hyperlipidemia, combined, type 2","type":"exact"},{"name":"hyperlipidemia, familial combined, 2","type":"related"},{"name":"hyplip2","type":"related"}],"termid":"MONDO:0011470","xrefs":{"Monarch":{"xref_id":"0011470"}}}


id: GO:0120019
data:
  {"annotated_genes":["SJAG_03746"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99481],"is_not":false,"summary":null,"term":"GO:0120019"}]},"cv_name":"molecular_function","definition":"Removes phosphatidylcholine from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle.","definition_xrefs":["PMID:24220498","PMID:25797198","GOC:krc","PMID:20823909"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylcholine transporter activity","termid":"GO:0008525"},{"relation_name":"is_a","term_name":"phospholipid transfer activity","termid":"GO:0120014"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03746":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0120013"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0120013","GO:0003674"],"is_obsolete":false,"name":"phosphatidylcholine transfer activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1483211","Reactome:R-HSA-1483219","Reactome:R-HSA-1483087"],"synonyms":[{"name":"intermembrane phosphatidylcholine transfer activity","type":"narrow"},{"name":"phosphatidylcholine carrier activity","type":"exact"}],"termid":"GO:0120019","terms_by_termid":{"GO:0120019":null}}


id: PBO:0091204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu","termid":"PBO:0091204"}


id: GO:0080068
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 5-methylthiopentyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = 5-methylthiopentyl-glucosinolate + adenosine 3',5'-bisphosphate.","definition_xrefs":["PMID:19077143"],"gene_count":0,"genotype_count":0,"name":"obsolete 5-methylthiopentyl-desulfoglucosinolate sulfotransferase activity (obsolete GO:0080068)","termid":"GO:0080068"}


id: MONDO:1012160
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Megaesophagus that occurs in sheep.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"megaesophagus, non-human animal","termid":"MONDO:1011660"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"megaesophagus, sheep","secondary_identifiers":["OMIA:000631-9940"],"termid":"MONDO:1012160","xrefs":{"Monarch":{"xref_id":"1012160"}}}


id: GO:0015416
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + phosphonate(out) = ADP + phosphate + phosphonate(in). A phosphonate is any salt, anion, or ester of phosphonic acid (HPO(OH)2).","definition_xrefs":["RHEA:18065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATPase-coupled inorganic anion transmembrane transporter activity","termid":"GO:0043225"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"ABC-type phosphonate transporter activity","secondary_identifiers":["GO:0102017","EC:7.3.2.2","MetaCyc:3.6.3.28-RXN","GO:0042917","GO:0015604"],"synonyms":[{"name":"ATP phosphohydrolase (phosphonate-transporting)","type":"related"},{"name":"ATPase-coupled alkylphosphonate transmembrane transporter activity","type":"narrow"},{"name":"ATPase-coupled organic phosphonate transmembrane transporter activity","type":"related"},{"name":"alkylphosphonate ABC transporter activity","type":"narrow"},{"name":"alkylphosphonate transmembrane transporter activity","type":"narrow"},{"name":"alkylphosphonate transmembrane-transporting ATPase activity","type":"narrow"},{"name":"organic phosphonate transmembrane transporter activity","type":"broad"},{"name":"organic phosphonate transmembrane-transporting ATPase activity","type":"related"},{"name":"phosphonate ABC transporter","type":"exact"},{"name":"phosphonate transporting ATPase activity","type":"related"},{"name":"phosphonate-transporting ATPase activity","type":"related"}],"termid":"GO:0015416"}


id: PBO:0119344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein O-mannosyltransferase Ogm2","termid":"PBO:0119344"}


id: GO:0016849
data:
  {"annotated_genes":["SJAG_03328","SJAG_01260","SJAG_04907","SJAG_00754","SJAG_01254"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[66288],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004016"},{"annotations":[80755,73223,74664,119710],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000213"}]},"cv_name":"molecular_function","definition":"Catalysis of the cleavage of a phosphorus-oxygen bond by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lyase activity","termid":"GO:0016829"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00754":null,"SJAG_01254":null,"SJAG_01260":null,"SJAG_03328":null,"SJAG_04907":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"phosphorus-oxygen lyase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["EC:4.6.-.-"],"termid":"GO:0016849","terms_by_termid":{"GO:0000213":null,"GO:0004016":null}}


id: PBO:0091079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding forkhead transcription factor, meiotic Mei4","termid":"PBO:0091079"}


id: PBO:0082001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger SWIM-type containing 2","termid":"PBO:0082001"}


id: GO:0120028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of osmosensory signaling pathway.","definition_xrefs":["GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of osmosensory signaling pathway (obsolete GO:0120028)","termid":"GO:0120028"}


id: PBO:0013453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly protein Cox1102/ mitochondrial ribosomal protein Rsm2202, fusion protein (predicted)","termid":"PBO:0013453"}


id: GO:1901404
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of tetrapyrrole catabolic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catabolic process","termid":"GO:0009894"},{"relation_name":"is_a","term_name":"regulation of tetrapyrrole metabolic process","termid":"GO:1901401"},{"relation_name":"regulates","term_name":"tetrapyrrole catabolic process","termid":"GO:0033015"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"regulation of tetrapyrrole catabolic process","synonyms":[{"name":"regulation of tetrapyrrole breakdown","type":"exact"},{"name":"regulation of tetrapyrrole catabolism","type":"exact"},{"name":"regulation of tetrapyrrole degradation","type":"exact"}],"termid":"GO:1901404"}


id: PBO:0002585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum resident protein required for packaging into COPII vesicles (predicted)","termid":"PBO:0002585"}


id: PBO:0091075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial single stranded DNA specific 5'-3' exodeoxyribonuclease Exo5","termid":"PBO:0091075"}


id: MONDO:0002988
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An aggressive malignant tumor of melanocytic origin that arises from the cervix.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucosal melanoma","termid":"MONDO:0000544"},{"relation_name":"is_a","term_name":"cervical cancer","termid":"MONDO:0002974"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"cervix melanoma","secondary_identifiers":["UMLS:C0877611","NCIT:C40239","MEDGEN:163764","DOID:4413"],"synonyms":[{"name":"cervical melanoma","type":"exact"},{"name":"melanoma of the cervix","type":"exact"},{"name":"primary malignant melanoma of the cervix uteri","type":"related"},{"name":"primary malignant melanoma of the uterine cervix","type":"related"}],"termid":"MONDO:0002988","xrefs":{"Monarch":{"xref_id":"0002988"}}}


id: MONDO:0700150
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A tumor composed of mast cells that occurs in dogs.","definition_xrefs":["NCIT:C129077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mast cell tumor, dog","termid":"MONDO:1011555"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canine mastocytoma","termid":"MONDO:0700150","xrefs":{"Monarch":{"xref_id":"0700150"}}}


id: GO:0098846
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cell projection of a podocyte (glomerular visceral epithelial cell) forming a foot-like structure projecting from a podocyte primary projection, that wraps around capillaries of a renal glomerulus. Adjacent feet (pedicels) interdigitate, leaving thin filtration slits between them, which are covered by slit diaphragms.","definition_xrefs":["PMID:25324828"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection","termid":"GO:0120025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"podocyte foot","secondary_identifiers":["Wikipedia:Podocyte"],"synonyms":[{"name":"pedicel","type":"exact"},{"name":"podocyte foot process","type":"exact"},{"name":"secondary podocyte projection","type":"exact"}],"termid":"GO:0098846"}


id: MONDO:0003874
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A serous adenocarcinoma that arises from the ovary and is characterized by the presence of a papillary architectural pattern.","definition_xrefs":["NCIT:C6256"],"direct_ancestors":[{"relation_name":"is_a","term_name":"papillary adenocarcinoma","termid":"MONDO:0002512"},{"relation_name":"is_a","term_name":"ovarian papillary tumor","termid":"MONDO:0003813"},{"relation_name":"is_a","term_name":"ovarian serous adenocarcinoma","termid":"MONDO:0005211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"ovarian serous surface papillary adenocarcinoma","secondary_identifiers":["DOID:6408","UMLS:C1335178","MEDGEN:233279"],"synonyms":[{"name":"ovarian serous surface papillary adenocarcinoma","type":"exact"},{"name":"ovary papillary carcinoma","type":"exact"},{"name":"serous surface papillary carcinoma of ovary","type":"exact"},{"name":"serous surface papillary carcinoma of the ovary","type":"exact"}],"termid":"MONDO:0003874","xrefs":{"Monarch":{"xref_id":"0003874"}}}


id: PBO:0001662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L28 (predicted)","termid":"PBO:0001662"}


id: PBO:0028889
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_without_cell_division,_elongated_multinucleate_cell","termid":"PBO:0028889"}


id: GO:0004824
data:
  {"annotated_genes":["SJAG_00488","SJAG_04409"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73565,75378],"is_not":false,"summary":null,"term":"GO:0004824"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys).","definition_xrefs":["EC:6.1.1.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00488":null,"SJAG_04409":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140098","GO:0016874","GO:0140101","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"lysine-tRNA ligase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-380008","MetaCyc:LYSINE--TRNA-LIGASE-RXN","Reactome:R-HSA-380233","RHEA:20792"],"synonyms":[{"name":"L-lysine-transfer RNA ligase activity","type":"related"},{"name":"L-lysine:tRNALys ligase (AMP-forming)","type":"related"},{"name":"lysine translase activity","type":"related"},{"name":"lysine-tRNA synthetase activity","type":"related"},{"name":"lysyl-tRNA synthetase activity","type":"exact"},{"name":"lysyl-transfer RNA synthetase activity","type":"related"},{"name":"lysyl-transfer ribonucleate synthetase activity","type":"related"}],"termid":"GO:0004824","terms_by_termid":{"GO:0004824":null}}


id: GO:0019151
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-galactose + NAD+ = D-galactono-1,4-lactone + NADH + H+.","definition_xrefs":["EC:1.1.1.48"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"galactose 1-dehydrogenase activity","secondary_identifiers":["RHEA:21296","MetaCyc:GALACTODEHYDROG-RXN"],"synonyms":[{"name":"D-galactose 1-dehydrogenase activity","type":"exact"},{"name":"D-galactose dehydrogenase activity","type":"related"},{"name":"D-galactose:NAD+ 1-oxidoreductase activity","type":"related"},{"name":"NAD-dependent D-galactose dehydrogenase activity","type":"related"},{"name":"beta-galactose dehydrogenase activity","type":"related"}],"termid":"GO:0019151"}


id: PR:Q10334
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glutamate-pyruvate aminotransferase AlaA that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alanine aminotransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC582.08","secondary_identifiers":["UniProtKB:Q10334"],"synonyms":[{"name":"GPT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-alaA","type":"exact"},{"name":"glutamate pyruvate transaminase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"glutamic--alanine transaminase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"glutamic--pyruvic transaminase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10334"}


id: PBO:0000332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AP-2 adaptor complex subunit Apm4 (predicted)","termid":"PBO:0000332"}


id: SO:0000189
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A retrotransposon without long terminal repeat sequences.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retrotransposon","termid":"SO:0000180"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non_LTR_retrotransposon","synonyms":[{"name":"non LTR retrotransposon","type":"exact"}],"termid":"SO:0000189"}


id: PBO:0047282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FA complementation group F","termid":"PBO:0047282"}


id: PBO:0066751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 49","termid":"PBO:0066751"}


id: MONDO:0015761
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Trisomy 10p is a syndrome of mental retardation/multiple congenital malformations (MR-MCA) that is caused by the total or partial duplication of the short arm of chromosome 10.","definition_xrefs":["Orphanet:171929"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial duplication of the short arm of chromosome 10","termid":"MONDO:0016947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trisomy 10p","secondary_identifiers":["GARD:5299","MESH:C538290","UMLS:C4082793","MEDGEN:904688","SCTID:717157006"],"synonyms":[{"name":"10p duplication","type":"related"},{"name":"10p trisomy","type":"related"},{"name":"Duplication 10p","type":"related"},{"name":"chromosome 10p duplication","type":"related"},{"name":"partial trisomy 10p","type":"related"},{"name":"trisomy type 10p","type":"exact"}],"termid":"MONDO:0015761","xrefs":{"Monarch":{"xref_id":"0015761"}}}


id: PBO:0054331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1724","termid":"PBO:0054331"}


id: PBO:0072813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterile alpha motif domain containing 9","termid":"PBO:0072813"}


id: MONDO:0016711
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A histological variant of medulloblastoma, an embryonic malignancy, often located in one of the cerebellar hemispheres, occurring most frequently in adults and manifesting with symptoms such as vomiting and headache.","definition_xrefs":["Orphanet:251863"],"direct_ancestors":[{"relation_name":"is_a","term_name":"medulloblastoma","termid":"MONDO:0007959"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"desmoplastic/nodular medulloblastoma","secondary_identifiers":["UMLS:C0751291","ICDO:9471/3","ONCOTREE:DMBL","GARD:17215","MEDGEN:148272","NCIT:C4956"],"synonyms":[{"name":"Desmoplastic medulloblastoma","type":"exact"},{"name":"desmoplastic medulloblastoma","type":"exact"},{"name":"desmoplastic nodular medulloblastoma","type":"exact"},{"name":"desmoplastic/nodular medulloblastoma","type":"exact"}],"termid":"MONDO:0016711","xrefs":{"Monarch":{"xref_id":"0016711"}}}


id: PBO:0086694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; in many strains, YML002W is continuous with YML003W, and is predicted to encode a single protein of 1090 aa with a full-length VPS9 domain; in strains S288C, W303, and CEN.PK, a single thymine residue is deleted near the 3' end of YML003W at ChrXIII:264337, causing a frameshift and premature stop codon, truncating YML003W","termid":"PBO:0086694"}


id: MONDO:0002152
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"strabismus","termid":"MONDO:0003432"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intermittent squint","secondary_identifiers":["ICD9:378.20","MEDGEN:508928","UMLS:C0152210","DOID:1942","ICD9:378.2","SCTID:74025007"],"synonyms":[{"name":"intermittent heterotropia","type":"exact"}],"termid":"MONDO:0002152","xrefs":{"Monarch":{"xref_id":"0002152"}}}


id: GO:0030897
data:
  {"annotated_genes":["SJAG_05194","SJAG_01598","SJAG_03005","SJAG_05184","SJAG_00380","SJAG_01772","SJAG_00204","SJAG_04966"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[96210,72993,81595,78966,72919,76886,81858,106597],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902500"}]},"cv_name":"cellular_component","definition":"A multimeric protein complex that associates with the vacuolar membrane, late endosomal (multivesicular body) and lysosomal membranes. HOPS is a tethering complex involved in vesicle fusion.","definition_xrefs":["PMID:23645161","PMID:10944212"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"is_a","term_name":"vesicle tethering complex","termid":"GO:0099023"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00204":null,"SJAG_00380":null,"SJAG_01598":null,"SJAG_01772":null,"SJAG_03005":null,"SJAG_04966":null,"SJAG_05184":null,"SJAG_05194":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"HOPS complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0030897","terms_by_termid":{"GO:1902500":null}}


id: PBO:0048561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP-L-fucose synthase","termid":"PBO:0048561"}


id: PBO:0053421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 363","termid":"PBO:0053421"}


id: PBO:0066590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ras homolog family member D","termid":"PBO:0066590"}


id: GO:0047839
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dATP + depurinated DNA = ribose triphosphate + DNA.","definition_xrefs":["EC:2.6.99.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring nitrogenous groups","termid":"GO:0016769"},{"relation_name":"is_a","term_name":"catalytic activity, acting on DNA","termid":"GO:0140097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"}],"interesting_parent_ids":["GO:0140097","GO:0003824","GO:0003674","GO:0016740","GO:0016769"],"is_obsolete":false,"name":"dATP(dGTP)-DNA purinetransferase activity","secondary_identifiers":["MetaCyc:DATPDGTP--DNA-PURINE-TRANSFERASE-RXN"],"synonyms":[{"name":"dATP(dGTP)--DNA purine transferase activity","type":"exact"},{"name":"dATP(dGTP):depurinated-DNA purine transferase activity","type":"related"}],"termid":"GO:0047839"}


id: PBO:0046177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ETS transcription factor ELK4","termid":"PBO:0046177"}


id: GO:0019010
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2E,6E)-farnesoate + S-adenosyl-L-methionine = methyl (2E,6E)-farnesoate + S-adenosyl-L-homocysteine. Also converts juvenile hormone III carboxylate into juvenile hormone-III.","definition_xrefs":["PMID:12135499","PMID:18549957","PMID:14530389","EC:2.1.1.325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016741","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"farnesoic acid O-methyltransferase activity","synonyms":[{"name":"S-adenosyl-methionine:farnesoic acid O-methyltransferase activity","type":"exact"},{"name":"juvenile hormone acid methyltransferase activity","type":"exact"},{"name":"juvenile hormone-III synthase activity","type":"exact"}],"termid":"GO:0019010"}


id: PBO:0082375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Basic leucine zipper (bZIP) transcription factor from ATF/CREB family involved in stress-responsive regulatory network; mediates transcriptional activation of NCE103 in response to low CO2 levels; proposed to be a regulator of oleate responsive genes; involved in utilization of non-optimal carbon sources and chromosome stability; relocalizes to the cytosol in response to hypoxia; CST6 has a paralog, ACA1, that arose from the whole genome duplication","termid":"PBO:0082375"}


id: PBO:0028312
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_acetylation_at_protein_coding_gene","termid":"PBO:0028312"}


id: PBO:0044110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer/testis associated transcript 69","termid":"PBO:0044110"}


id: PATO:0002493
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteroventrally.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orientation","termid":"PATO:0000133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anteroventral orientation","synonyms":[{"name":"anteroventrally directed","type":"exact"}],"termid":"PATO:0002493"}


id: PBO:0057219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 378g","termid":"PBO:0057219"}


id: PBO:0064345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plexin A3","termid":"PBO:0064345"}


id: GO:0035404
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histones by addition of a phosphate group to a serine residue.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete histone-serine phosphorylation (obsolete GO:0035404)","synonyms":[{"name":"histone serine phosphorylation","type":"exact"}],"termid":"GO:0035404"}


id: SO:0000831
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of a gene.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"},{"relation_name":"member_of","term_name":"gene","termid":"SO:0000704"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_member_region","synonyms":[{"name":"gene member region","type":"exact"}],"termid":"SO:0000831"}


id: PBO:0055353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2782","termid":"PBO:0055353"}


id: MONDO:0016587
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Arrhythmogenic right ventricular cardiomyopathy (ARVC) is a heart muscle disease that consists in progressive dystrophy of primarily the right ventricular myocardium with fibro-fatty replacement and ventricular dilation, and that is clinically characterized by ventricular arrhythmias and a risk of sudden cardiac death.","definition_xrefs":["Orphanet:247"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intrinsic cardiomyopathy","termid":"MONDO:0000591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"arrhythmogenic right ventricular cardiomyopathy","secondary_identifiers":["GARD:5847","DOID:0050431","NANDO:2100055","SCTID:281170005","MEDGEN:87618","NCIT:C84571","MESH:D019571","ICD9:425.4","MedDRA:10058093","NANDO:2200230","UMLS:C0349788"],"synonyms":[{"name":"ARVC","type":"exact"},{"name":"ARVC cardiomyopathy","type":"exact"},{"name":"ARVD","type":"exact"},{"name":"arrhythmogenic RVD","type":"exact"},{"name":"arrhythmogenic right ventricular cardiomyopathy","type":"exact"},{"name":"arrhythmogenic right ventricular dysplasia","type":"exact"},{"name":"arrhythmogenic right ventricular dysplasia/cardiomyopathy","type":"exact"},{"name":"right ventricular dysplasia","type":"exact"}],"termid":"MONDO:0016587","xrefs":{"Monarch":{"xref_id":"0016587"}}}


id: MONDO:0004826
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A concretion in the urethra.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urethral disorder","termid":"MONDO:0004184"},{"relation_name":"is_a","term_name":"lower urinary tract calculus","termid":"MONDO:0004828"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urethral calculus","secondary_identifiers":["DOID:9589","MEDGEN:57664","ICD9:594.2","SCTID:20342001","UMLS:C0162301"],"synonyms":[{"name":"urethra urolithiasis","type":"exact"},{"name":"urethral Stone","type":"exact"},{"name":"urolithiasis of urethra","type":"exact"}],"termid":"MONDO:0004826","xrefs":{"Monarch":{"xref_id":"0004826"}}}


id: PBO:0043341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chloride nucleotide-sensitive channel 1A","termid":"PBO:0043341"}


id: MONDO:0850156
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A B-lymphoblastic leukemia/lymphoma that is characterized by the presence of lymphoblasts that carry a translocation between the KMT2A gene at 11q23.3 and another gene partner resulting in the production of a KMT2A related fusion protein.","definition_xrefs":["DOID:0080644"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B-cell acute lymphoblastic leukemia","termid":"MONDO:0004947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"B-lymphoblastic leukemia/lymphoma MLL rearranged","termid":"MONDO:0850156","xrefs":{"Monarch":{"xref_id":"0850156"}}}


id: PBO:0080499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vexin","termid":"PBO:0080499"}


id: PBO:0053839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1104","termid":"PBO:0053839"}


id: FYPO:0001110
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell of normal morphology (i.e. size, shape, and structure) that undergoes two or more rounds of cell division, and then dies.","definition_xrefs":["PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, multiple cell divisions","termid":"FYPO:0002430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000004"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions, normal morphology","synonyms":[{"name":"inviable following spore germination, multiple cell divisions, normal morphology","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions, normal morphology","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions, normal morphology","type":"exact"}],"termid":"FYPO:0001110"}


id: PBO:0028087
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_level_of_DSR-containing_meiosis_gene_mRNA_during_vegetative_growth","termid":"PBO:0028087"}


id: MONDO:0004459
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hepatoid adenocarcinoma that involves the urinary bladder.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bladder adenocarcinoma","termid":"MONDO:0002751"},{"relation_name":"is_a","term_name":"hepatoid adenocarcinoma","termid":"MONDO:0006243"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"bladder hepatoid adenocarcinoma","secondary_identifiers":["DOID:8097","MEDGEN:267739","NCIT:C39838","UMLS:C1511189"],"synonyms":[{"name":"bladder hepatoid adenocarcinoma","type":"exact"}],"termid":"MONDO:0004459","xrefs":{"Monarch":{"xref_id":"0004459"}}}


id: FYPO:0007112
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process in which depolymerization (i.e. removal of tubulin dimers) of microtubules occurs at a lower rate, or speed, as part of centromere clustering during meiotic prophase I.","definition_xrefs":["PomBase:mah","PMID:23770679"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule depolymerization","termid":"FYPO:0007111"},{"relation_name":"is_a","term_name":"decreased microtubule depolymerisation involved in meitotic centromere clustering during meiotic prophase I","termid":"FYPO:0009058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased rate of microtubule depolymerization involved in meiotic centromere clustering during meiotic prophase I","synonyms":[{"name":"decreased microtubule depolymerisation speed involved in meiotic centromere clustering during meiotic prophase I","type":"exact"},{"name":"decreased microtubule depolymerization speed involved in meiotic centromere clustering during meiotic prophase I","type":"exact"},{"name":"decreased microtubule shrinkage shrinkage speed involved in meiotic centromere clustering during meiotic prophase I","type":"exact"},{"name":"decreased microtubule shrinkage speed involved in meiotic centromere clustering during meiotic prophase I","type":"exact"},{"name":"decreased rate of microtubule depolymerisation involved in meiotic centromere clustering during meiotic prophase I","type":"exact"},{"name":"decreased rate of microtubule depolymerization involved in meiotic centromere clustering during prophase I","type":"exact"},{"name":"decreased rate of microtubule depolymerization involved in meiotic chromosome clustering during meiotic prophase I","type":"related"},{"name":"decreased rate of microtubule depolymerization involved in meiotic kinetochore retrieval during meiotic prophase I","type":"related"},{"name":"reduced rate of microtubule depolymerization involved in meiotic centromere clustering during meiotic prophase I","type":"exact"}],"termid":"FYPO:0007112"}


id: PBO:0108598
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-results_in_changes_to_anatomical_or_cellular_structure","termid":"PBO:0108598"}


id: GO:0072250
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into a metanephric glomerular visceral epithelial cell. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"podocyte cell fate commitment","termid":"GO:0072149"},{"relation_name":"is_a","term_name":"metanephric glomerular epithelial cell fate commitment","termid":"GO:0072315"},{"relation_name":"part_of","term_name":"metanephric podocyte differentiation","termid":"GO:0072248"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric podocyte cell fate commitment","synonyms":[{"name":"metanephric glomerular visceral epithelial cell fate commitment","type":"exact"}],"termid":"GO:0072250"}


id: GO:0102523
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-2-chloropropanoate + NADP = 2-chloroacrylate + NADPH + H+.","definition_xrefs":["GOC:pz","EC:1.3.1.103"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2-chloroacrylate reductase activity","secondary_identifiers":["RHEA:36591","MetaCyc:RXN-14536"],"termid":"GO:0102523"}


id: FYPO:0001044
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of acid phosphatase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal phosphatase activity","termid":"FYPO:0004302"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0001985","FYPO:0000652","FYPO:0000654","FYPO:0000707"],"is_obsolete":false,"name":"abnormal acid phosphatase activity","termid":"FYPO:0001044"}


id: GO:0000958
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of mRNA transcribed from the mitochondrial genome and occurring in the mitochondrion.","definition_xrefs":["GOC:mah","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial RNA catabolic process","termid":"GO:0000957"},{"relation_name":"is_a","term_name":"mRNA catabolic process","termid":"GO:0006402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0010467","GO:0016071","GO:0008150"],"is_obsolete":false,"name":"mitochondrial mRNA catabolic process","termid":"GO:0000958"}


id: GO:0050806
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell communication","termid":"GO:0010647"},{"relation_name":"is_a","term_name":"positive regulation of signaling","termid":"GO:0023056"},{"relation_name":"is_a","term_name":"modulation of chemical synaptic transmission","termid":"GO:0050804"},{"relation_name":"positively_regulates","term_name":"chemical synaptic transmission","termid":"GO:0007268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of synaptic transmission","synonyms":[{"name":"activation of synaptic transmission","type":"narrow"},{"name":"stimulation of synaptic transmission","type":"narrow"},{"name":"up regulation of synaptic transmission","type":"exact"},{"name":"up-regulation of synaptic transmission","type":"exact"},{"name":"upregulation of synaptic transmission","type":"exact"}],"termid":"GO:0050806"}


id: MONDO:0015836
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"didelphys uterus","termid":"MONDO:0015834"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bicervical bicornuate uterus with patent cervix and vagina","secondary_identifiers":["Orphanet:180111","icd11.foundation:1145216664","UMLS:C5680491","GARD:20178","MEDGEN:1842271"],"termid":"MONDO:0015836","xrefs":{"Monarch":{"xref_id":"0015836"}}}


id: SO:0000878
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a sequence that contains the code for one gene product.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcript_attribute","termid":"SO:0000237"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monocistronic","termid":"SO:0000878"}


id: FYPO:0007680
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which more ribonucleotides than normal are incorporated into one or both strands during mitotic DNA replication.","definition_xrefs":["PomBase:mah","PMID:33568651"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic DNA replication","termid":"FYPO:0001343"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000293","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"increased ribonucleotide incorporation into DNA","termid":"FYPO:0007680"}


id: GO:0035401
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: histone H3-tyrosine (position 41) + ATP = histone H3-phosphotyrosine (position 41) + ADP. This reaction is the addition of a phosphate group to the tyrosine residue at position 41 of histone H3.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein tyrosine kinase activity","termid":"GO:0004713"},{"relation_name":"is_a","term_name":"histone H3 kinase activity","termid":"GO:0140996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0003824","GO:0016301","GO:0003674","GO:0140096","GO:0016740","GO:0004672"],"is_obsolete":false,"name":"histone H3Y41 kinase activity","synonyms":[{"name":"histone H3-Y41 kinase activity","type":"exact"},{"name":"histone kinase activity (H3-Y41 specific)","type":"exact"},{"name":"histone tyrosine kinase activity (H3-Y41 specific)","type":"exact"},{"name":"histone-tyrosine kinase activity (H3-Y41 specific)","type":"exact"}],"termid":"GO:0035401"}


id: GO:0018061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of a N-terminal peptidyl-phenylalanine residue by either oxidative deamination or by transamination and subsequent reduction to form peptidyl-L-3-phenyllactic acid.","definition_xrefs":["RESID:AA0128"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-phenylalanine modification","termid":"GO:0018207"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-L-3-phenyllactic acid biosynthetic process from peptidyl-phenylalanine","synonyms":[{"name":"peptidyl-L-3-phenyllactic acid anabolism from peptidyl-phenylalanine","type":"exact"},{"name":"peptidyl-L-3-phenyllactic acid formation from peptidyl-phenylalanine","type":"exact"},{"name":"peptidyl-L-3-phenyllactic acid synthesis from peptidyl-phenylalanine","type":"exact"}],"termid":"GO:0018061"}


id: MONDO:0014171
data:
  {"annotated_genes":["SJAG_01215"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87747],"is_not":false,"summary":null,"term":"MONDO:0014171"}]},"cv_name":"mondo","definition":"Any complex cortical dysplasia with other brain malformations in which the cause of the disease is a mutation in the TUBG1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complex cortical dysplasia with other brain malformations","termid":"MONDO:0000904"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01215":null},"genotype_count":0,"is_obsolete":false,"name":"complex cortical dysplasia with other brain malformations 4","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3809420","MEDGEN:815750","OMIM:615412","DOID:0090138"],"synonyms":[{"name":"CDCBM4","type":"exact"},{"name":"TUBG1 complex cortical dysplasia with other brain malformations","type":"exact"},{"name":"complex cortical dysplasia with other brain malformations caused by mutation in TUBG1","type":"exact"},{"name":"complex cortical dysplasia with other brain malformations type 4","type":"exact"},{"name":"cortical dysplasia, Complex, with Other brain malformations type 4","type":"exact"},{"name":"cortical dysplasia, complex, with other brain malformations 4","type":"related"}],"termid":"MONDO:0014171","terms_by_termid":{"MONDO:0014171":null},"xrefs":{"Monarch":{"xref_id":"0014171"}}}


id: PBO:0072312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S25 pseudogene 9","termid":"PBO:0072312"}


id: MONDO:1010225
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cystic hygroma that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm, non-human animal","termid":"MONDO:0700098"},{"relation_name":"is_a","term_name":"cardiovascular disorder, non-human animal","termid":"MONDO:1011306"},{"relation_name":"is_a","term_name":"lymphoid system disorder, non-human animal","termid":"MONDO:1011330"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystic hygroma, non-human animal","secondary_identifiers":["OMIA:002369"],"termid":"MONDO:1010225","xrefs":{"Monarch":{"xref_id":"1010225"}}}


id: GO:0001699
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of gastric acid by parietal cells in response to acetylcholine.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gastric acid secretion","termid":"GO:0001696"},{"relation_name":"part_of","term_name":"cellular response to acetylcholine","termid":"GO:1905145"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"acetylcholine-induced gastric acid secretion","termid":"GO:0001699"}


id: MONDO:0009884
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"platelet prostacyclin receptor defect","secondary_identifiers":["MESH:C564884","MEDGEN:337912","UMLS:C1849774","OMIM:262875"],"synonyms":[{"name":"Vienna-Hietzing defect","type":"related"},{"name":"platelet prostacyclin receptor defect","type":"exact"}],"termid":"MONDO:0009884","xrefs":{"Monarch":{"xref_id":"0009884"}}}


id: MONDO:0002663
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete systemic mastocytosis (obsolete MONDO:0002663)","termid":"MONDO:0002663","xrefs":{"Monarch":{"xref_id":"0002663"}}}


id: PBO:0064179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group XF, pseudogene","termid":"PBO:0064179"}


id: PR:P31411
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vma2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P31411"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type proton ATPase subunit B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC637.05c","synonyms":[{"name":"Spom972h-vma2","type":"exact"},{"name":"V-ATPase 57 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"V-ATPase subunit B (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"vacuolar proton pump subunit B (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P31411"}


id: PBO:0117384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patatin like domain 2, triacylglycerol lipase","termid":"PBO:0117384"}


id: SO:0000194
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats.","direct_ancestors":[{"relation_name":"is_a","term_name":"non_LTR_retrotransposon","termid":"SO:0000189"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LINE_element","synonyms":[{"name":"LINE","type":"exact"},{"name":"LINE element","type":"exact"},{"name":"Long interspersed element","type":"exact"},{"name":"Long interspersed nuclear element","type":"exact"}],"termid":"SO:0000194"}


id: PBO:0048270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GALNT7 divergent transcript","termid":"PBO:0048270"}


id: PBO:0061219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar protein 10","termid":"PBO:0061219"}


id: PBO:0075019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 115-30","termid":"PBO:0075019"}


id: GO:0001658
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the branching structure of the ureteric bud is generated and organized. The ureteric bud is an epithelial tube that grows out from the metanephric duct. The bud elongates and branches to give rise to the ureter and kidney collecting tubules.","definition_xrefs":["PMID:16916378","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branching morphogenesis of an epithelial tube","termid":"GO:0048754"},{"relation_name":"part_of","term_name":"ureteric bud morphogenesis","termid":"GO:0060675"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"branching involved in ureteric bud morphogenesis","synonyms":[{"name":"ureteric bud branching","type":"exact"}],"termid":"GO:0001658"}


id: PBO:0111842
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab subfamily","termid":"PBO:0111842"}


id: PBO:0050478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox A6","termid":"PBO:0050478"}


id: PR:P34069
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An M-factor precursor mfm2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:MSY","UniProtKB:P34069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"M-factor precursor mfm2","termid":"PR:000025004"},{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"M-factor precursor mfm2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC513.03","synonyms":[{"name":"Spom972h-mfm2","type":"exact"}],"termid":"PR:P34069"}


id: FYPO:0003825
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell is inviable and has two nuclei but no septum, and the mitotic cell cycle is arrested with nuclei at the mitotic G2/M phase transition.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell cycle arrest at mitotic G2/M phase transition","termid":"FYPO:0000400"},{"relation_name":"is_a","term_name":"inviable binucleate aseptate cell with mitotic cell cycle arrest before cell separation","termid":"FYPO:0005689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000631","FYPO:0001320","FYPO:0005447","FYPO:0000032","FYPO:0000004"],"is_obsolete":false,"name":"inviable binucleate aseptate cell with cell cycle arrest at mitotic G2/M phase transition before cell separation","synonyms":[{"name":"inviable binucleate aseptate cell with cell cycle arrest at mitotic G2/M phase transition before cell separation during vegetative growth","type":"exact"},{"name":"inviable binucleate aseptate cell with cell cycle arrest in mitotic G2 phase before cell separation","type":"related"},{"name":"inviable binucleate aseptate cell with mitotic G2/M phase transition arrest before cell separation","type":"exact"},{"name":"inviable binucleate aseptate cell with mitotic cell cycle arrest at G2/M before cytokinesis","type":"exact"},{"name":"inviable binucleate aseptate cell with mitotic cell cycle arrest at G2/M phase transition before cell separation","type":"exact"},{"name":"inviable binucleate cell with mitotic cell cycle arrest at G2/M before division septum assembly","type":"exact"},{"name":"inviable cell with mitotic G2/M arrest after failed cytokinesis","type":"related"},{"name":"inviable cell with nuclear division arrest at G2/M without septation (normal cell length)","type":"exact"},{"name":"lethal; binucleate aseptate cell with mitotic cell cycle arrest at G2/M before cell separation","type":"exact"},{"name":"mitotic cell cycle arrest at G2/M before cell separation with inviable binucleate aseptate cell","type":"exact"}],"termid":"FYPO:0003825"}


id: MONDO:0023657
data:
  {"annotated_genes":["SJAG_03041"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88360],"is_not":false,"summary":null,"term":"MONDO:0023657"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"intellectual disability, autosomal dominant","termid":"MONDO:0100172"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03041":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"intellectual developmental disorder, autosomal dominant 65","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5543371","OMIM:619320","GARD:18547","MEDGEN:1787923"],"synonyms":[{"name":"MRD65","type":"exact"},{"name":"mental retardation, autosomal dominant 65","type":"exact"}],"termid":"MONDO:0023657","terms_by_termid":{"MONDO:0023657":null},"xrefs":{"Monarch":{"xref_id":"0023657"}}}


id: PBO:0077577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane and immunoglobulin domain containing 2","termid":"PBO:0077577"}


id: GO:0050977
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required for an organism to receive a chemical stimulus relating to a magnetic field, convert it to a molecular signal, and recognize and characterize the signal. It is believed that organisms such as birds and salamanders use a 'chemical compass': chemical reactions that involve transitions between different spin states can be influenced by magnetic fields and by detecting the different product ratios, these organisms can perceive the direction of the magnetic field. The mechanism by which this is detected is not certain but it may also involve light stimuli.","definition_xrefs":["GOC:ai","Wikipedia:Magnetoception","PMID:15886990"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception of chemical stimulus","termid":"GO:0007606"},{"relation_name":"is_a","term_name":"magnetoreception","termid":"GO:0050958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"magnetoreception by sensory perception of chemical stimulus","synonyms":[{"name":"magnetoreception by chemical stimulus","type":"exact"},{"name":"magnetoreception through chemical stimulus","type":"exact"},{"name":"magnetoreception, sensory perception of chemical stimulus","type":"exact"},{"name":"magnetoreception, using chemical stimulus","type":"exact"}],"termid":"GO:0050977"}


id: FYECO:0000437
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which the auxin analogue 5-adamantyl-IAA was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ 5IAA","secondary_identifiers":["PMID:37783794"],"synonyms":[{"name":"5-adamantyl-IAA","type":"exact"}],"termid":"FYECO:0000437"}


id: MONDO:0017325
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Early-onset epileptic encephalopathy and intellectual disability due to GRIN2A mutation is a rare intellectual disability and epilepsy syndrome characterized by global developmental delay and mild to profound intellectual disability, multiple types of usually intractable focal and generalized seizures with variable abnormal EEG findings, and bilateral progressive parenchymal volume loss and thin corpus callosum on brain MRI.","definition_xrefs":["Orphanet:289266"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"childhood-onset epilepsy syndrome","termid":"MONDO:0020072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"early-onset epileptic encephalopathy and intellectual disability due to GRIN2A mutation","secondary_identifiers":["MEDGEN:1663334","icd11.foundation:1655554340","UMLS:C4749281","GARD:21134","OMIM:613971"],"synonyms":[{"name":"early-onset epileptic encephalopathy and intellectual disability due to GRIN2A mutation","type":"exact"}],"termid":"MONDO:0017325","xrefs":{"Monarch":{"xref_id":"0017325"}}}


id: PBO:0013801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argininosuccinate synthase Arg12","termid":"PBO:0013801"}


id: PBO:0108702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RasGAP Gap1","termid":"PBO:0108702"}


id: PBO:0082394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta subunit of cytoplasmic phenylalanyl-tRNA synthetase; forms a tetramer with Frs2p to generate active enzyme; able to hydrolyze mis-aminoacylated tRNA-Phe, which could contribute to translational quality control","termid":"PBO:0082394"}


id: PBO:0011470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor, zf-fungal binuclear cluster type Klf1","termid":"PBO:0011470"}


id: PBO:0050242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 20","termid":"PBO:0050242"}


id: MONDO:0013348
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cone-rod dystrophy in which the cause of the disease is a mutation in the CDHR1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cone-rod dystrophy","termid":"MONDO:0015993"},{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066","MONDO:0005328"],"is_obsolete":false,"name":"cone-rod dystrophy 15","secondary_identifiers":["MEDGEN:462262","OMIM:613660","UMLS:C3150912","GARD:15686","DOID:0111021"],"synonyms":[{"name":"CDHR1 cone-rod dystrophy","type":"exact"},{"name":"CORD15","type":"exact"},{"name":"cone-rod dystrophy 15","type":"exact"},{"name":"cone-rod dystrophy caused by mutation in CDHR1","type":"exact"},{"name":"cone-rod dystrophy type 15","type":"exact"},{"name":"retinitis pigmentosa 65","type":"related"}],"termid":"MONDO:0013348","xrefs":{"Monarch":{"xref_id":"0013348"}}}


id: PBO:0067385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 489, pseudogene","termid":"PBO:0067385"}


id: GO:0018621
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-sulfobenzoate + H+ + NADH + O2 = 3,4-dihydroxybenzoate + NAD+ + sulfite.","definition_xrefs":["EC:1.14.12.8","RHEA:13937"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"4-sulfobenzoate 3,4-dioxygenase activity","secondary_identifiers":["MetaCyc:4-SULFOBENZOATE-34-DIOXYGENASE-RXN","UM-BBD_reactionID:r0293","KEGG_REACTION:R01636"],"synonyms":[{"name":"4-sulfobenzoate 3,4-dioxygenase system","type":"related"},{"name":"4-sulfobenzoate dioxygenase activity","type":"related"},{"name":"4-sulfobenzoate,NADH:oxygen oxidoreductase (3,4-hydroxylating, sulfite-forming)","type":"related"},{"name":"4-sulphobenzoate 3,4-dioxygenase activity","type":"exact"}],"termid":"GO:0018621"}


id: GO:0071408
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cycloalkane stimulus. A cycloalkane is a cyclic saturated hydrocarbon having the general formula CnH2n.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cycloalkane","termid":"GO:0014071"},{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to cycloalkane","termid":"GO:0071408"}


id: PBO:0031779
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_rate_of_endocytosis_during_vegetative_growth","termid":"PBO:0031779"}


id: GO:0036246
data:
  {"annotated_genes":["SJAG_03497","SJAG_05213","SJAG_01344"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97987,98975,120243],"is_not":false,"summary":null,"term":"GO:0036246"}]},"cv_name":"biological_process","definition":"The directed movement of phytochelatin 2 (PC2) into the vacuole. Phytochelatin 2 is a glutathione-related peptide composed of (gamma-Glu-Cys)n-Gly where n=2, and where the Glu and Cys residues are linked through a gamma-carboxylamide bond.","definition_xrefs":["GOC:al","PMID:19001374"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligopeptide transmembrane transport","termid":"GO:0035672"},{"relation_name":"is_a","term_name":"phytochelatin import into vacuole","termid":"GO:0071995"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01344":null,"SJAG_03497":null,"SJAG_05213":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"phytochelatin 2 import into vacuole","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"PC2 import into vacuole","type":"exact"}],"termid":"GO:0036246","terms_by_termid":{"GO:0036246":null}}


id: GO:0033654
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any sac-like membranous structures (cisternae) in a chloroplast found in host cells, combined into stacks (grana) and present singly in the stroma (stroma thylakoids or frets) as interconnections between grana. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell chloroplast part","termid":"GO:0033653"},{"relation_name":"is_a","term_name":"host thylakoid membrane","termid":"GO:0044160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell chloroplast thylakoid membrane","termid":"GO:0033654"}


id: PBO:0109977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"invertase, beta-fructofuranosidase Inv2","termid":"PBO:0109977"}


id: GO:0019056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus modulates the frequency, rate or extent of its host's transcription.","definition_xrefs":["PMID:7799962"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by virus of host transcription (obsolete GO:0019056)","synonyms":[{"name":"modification of host transcription","type":"exact"},{"name":"modulation by virus of host transcription","type":"narrow"},{"name":"perturbation of host cell transcription","type":"exact"}],"termid":"GO:0019056"}


id: FYECO:0000079
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which thiabendazole was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ thiabendazole","synonyms":[{"name":"TBZ added","type":"exact"}],"termid":"FYECO:0000079"}


id: PBO:0065231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 12","termid":"PBO:0065231"}


id: FYECO:0000220
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"A nitrogen source shift condition in which cells are first grown in a medium with glutamate as the nitrogen source, and then shifted to a medium with proline as the nitrogen source.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrogen source shift","termid":"FYECO:0000221"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nitrogen source shift, glutamate to proline","termid":"FYECO:0000220"}


id: PBO:0063110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate androgen-regulated mucin-like protein 1","termid":"PBO:0063110"}


id: PBO:0025501
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rrm-containing Cyclophilin regulating Transcription","termid":"PBO:0025501"}


id: PBO:0081394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 233","termid":"PBO:0081394"}


id: PBO:0041738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cathelicidin antimicrobial peptide","termid":"PBO:0041738"}


id: MONDO:0000057
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete medullary cystic kidney disease (obsolete MONDO:0000057)","termid":"MONDO:0000057","xrefs":{"Monarch":{"xref_id":"0000057"}}}


id: GO:0086055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that mediates signaling interactions between a Purkinje myocyte and a ventricular cardiac muscle cell by transfer of current between their adjacent cytoplasms via intercellular protein channels.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell communication by electrical coupling involved in cardiac conduction","termid":"GO:0086064"},{"relation_name":"is_a","term_name":"Purkinje myocyte to ventricular cardiac muscle cell communication","termid":"GO:0086068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Purkinje myocyte to ventricular cardiac muscle cell communication by electrical coupling","termid":"GO:0086055"}


id: GO:0018529
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: nitrilotriacetate + FMNH2 + O2 = aminodiacetate + FMN + glyoxylate + H2O.","definition_xrefs":["RHEA:31359"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"nitrilotriacetate monooxygenase activity","secondary_identifiers":["MetaCyc:RXN-9508","UM-BBD_reactionID:r0587","EC:1.14.14.10","KEGG_REACTION:R09798"],"termid":"GO:0018529"}


id: MONDO:0006369
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A WHO grade II or III pineal parenchymal neoplasm of intermediate-grade malignancy, affecting all ages. It is composed of diffuse sheets or large lobules of uniform cells with mild to moderate nuclear atypia and low to moderate level mitotic activity. (Adapted from WHO)","definition_xrefs":["NCIT:C6967"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"pineoblastoma","termid":"MONDO:0016722"},{"relation_name":"is_a","term_name":"pineal parenchymal cell neoplasm","termid":"MONDO:0024890"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pineal parenchymal tumor of intermediate differentiation","secondary_identifiers":["DOID:5030","GARD:10644","MEDGEN:234566","ONCOTREE:PPTID","EFO:1000474","SCTID:715904005","UMLS:C1367859","Orphanet:251919"],"synonyms":[{"name":"PPTID","type":"related"},{"name":"pineal parenchymal tumor of intermediate differentiation","type":"exact"},{"name":"pineal parenchymal tumor of intermediate differentiation (morphologic abnormality)","type":"exact"},{"name":"pineal parenchymal tumors of intermediate differentiation","type":"related"},{"name":"pineal parenchymal tumour of intermediate differentiation (morphologic abnormality)","type":"exact"},{"name":"pineal parenchymal tumours of intermediate differentiation","type":"related"}],"termid":"MONDO:0006369","xrefs":{"Monarch":{"xref_id":"0006369"}}}


id: MONDO:0012669
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Legius syndrome, also known as NF1-like syndrome, is a rare, genetic skin pigmentation disorder characterized by multiple cafC)-au-lait macules with or without axillary or inguinal freckling.","definition_xrefs":["Orphanet:137605"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperpigmentation of the skin","termid":"MONDO:0019289"},{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"},{"relation_name":"is_a","term_name":"Noonan syndrome and Noonan-related syndrome","termid":"MONDO:0020297"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005267","MONDO:0005093"],"is_obsolete":false,"name":"Legius syndrome","secondary_identifiers":["icd11.foundation:1025118245","DOID:0070484","GARD:10714","ICD9:709.09","OMIM:611431","SCTID:703541007","UMLS:C1969623","MEDGEN:370709","NCIT:C176941","MESH:C548032"],"synonyms":[{"name":"Legius syndrome","type":"exact"},{"name":"NF1-like syndrome","type":"exact"},{"name":"neurofibromatosis 1-like syndrome","type":"exact"},{"name":"neurofibromatosis type 1 like syndrome","type":"related"},{"name":"neurofibromatosis type 1-like syndrome","type":"related"}],"termid":"MONDO:0012669","xrefs":{"Monarch":{"xref_id":"0012669"}}}


id: GO:0045273
data:
  {"annotated_genes":["SJAG_00260","SJAG_01671","SJAG_03920","SJAG_02398"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[76393,77785,78590,90688],"is_not":false,"summary":null,"term":"GO:0045273"}]},"cv_name":"cellular_component","definition":"A part of the respiratory chain, containing the four polypeptide subunits of succinate dehydrogenase, flavin-adenine dinucleotide and iron-sulfur. Catalyzes the oxidation of succinate by ubiquinone. Connects the TCA cycle with the respiratory chain.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"is_a","term_name":"respiratory chain complex","termid":"GO:0098803"},{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00260":null,"SJAG_01671":null,"SJAG_02398":null,"SJAG_03920":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"respiratory chain complex II (succinate dehydrogenase)","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"electron transport complex II","type":"related"}],"termid":"GO:0045273","terms_by_termid":{"GO:0045273":null}}


id: PBO:0062248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily BN member 2 pseudogene","termid":"PBO:0062248"}


id: PR:Q9UTP3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fta6 gene.","definition_xrefs":["UniProtKB:Q9UTP3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein fta6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11H11.05c","synonyms":[{"name":"Spom972h-fta6","type":"exact"},{"name":"sim4 complex subunit fta6 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"sim4-mal2-associated protein 6 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTP3"}


id: GO:0006525
data:
  {"annotated_genes":["SJAG_00495","SJAG_00636","SJAG_00695","SJAG_00392","SJAG_01461","SJAG_00635","SJAG_03398","SJAG_01592","SJAG_01019","SJAG_00412","SJAG_04577","SJAG_00043"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100083,80274,113911,104570,120435,108491,113081,72076,112460],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042450"},{"annotations":[80190],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019544"},{"annotations":[80188,115214],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010121"},{"annotations":[77525],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033387"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-amino acid metabolic process","termid":"GO:1901605"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00043":null,"SJAG_00392":null,"SJAG_00412":null,"SJAG_00495":null,"SJAG_00635":null,"SJAG_00636":null,"SJAG_00695":null,"SJAG_01019":null,"SJAG_01461":null,"SJAG_01592":null,"SJAG_03398":null,"SJAG_04577":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"arginine metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Arginine"],"synonyms":[{"name":"arginine metabolism","type":"exact"}],"termid":"GO:0006525","terms_by_termid":{"GO:0010121":null,"GO:0019544":null,"GO:0033387":null,"GO:0042450":null}}


id: PBO:0050804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HtrA serine peptidase 4","termid":"PBO:0050804"}


id: MONDO:0032802
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0019497"],"is_obsolete":false,"name":"hearing loss, autosomal dominant 37","secondary_identifiers":["MEDGEN:1676950","OMIM:618533","UMLS:C4760307"],"synonyms":[{"name":"DEAFNESS, AUTOSOMAL DOMINANT 37","type":"narrow"},{"name":"DFNA37","type":"narrow"},{"name":"deafness, autosomal dominant 37","type":"narrow"}],"termid":"MONDO:0032802","xrefs":{"Monarch":{"xref_id":"0032802"}}}


id: MONDO:0014660
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive primary microcephaly","termid":"MONDO:0016660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0700092","MONDO:0006025"],"is_obsolete":false,"name":"microcephaly 15, primary, autosomal recessive","secondary_identifiers":["DOID:0070277","GARD:16123","MEDGEN:895496","UMLS:C4225310","OMIM:616486"],"synonyms":[{"name":"MCPH15","type":"related"},{"name":"microcephaly 15, primary, autosomal recessive","type":"exact"},{"name":"neurodevelopmental disorder with progressive microcephaly, spasticity, and brain abnormalities","type":"exact"}],"termid":"MONDO:0014660","xrefs":{"Monarch":{"xref_id":"0014660"}}}


id: PBO:0074321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small cell adhesion glycoprotein","termid":"PBO:0074321"}


id: GO:1904532
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any ATP-dependent microtubule motor activity, minus-end-directed that is involved in microtubule-based movement.","definition_xrefs":["PMID:25987607","GO_REF:0000061","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete ATP-dependent microtubule motor activity, minus-end-directed involved in microtubule-based movement (obsolete GO:1904532)","termid":"GO:1904532"}


id: MONDO:1010352
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Microphthalmia, isolated, with coloboma that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coloboma, non-human animal","termid":"MONDO:1010319"},{"relation_name":"is_a","term_name":"microphthalmia, non-human animal","termid":"MONDO:1010324"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microphthalmia, isolated, with coloboma, non-human animal","secondary_identifiers":["OMIA:002151"],"termid":"MONDO:1010352","xrefs":{"Monarch":{"xref_id":"1010352"}}}


id: MONDO:0045043
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease or disorder that involves the broad ligament of uterus.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligament disorder","termid":"MONDO:0045044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"disorder of uterine broad ligament","secondary_identifiers":["SCTID:237062006","MEDGEN:589074","UMLS:C0404479"],"synonyms":[{"name":"broad ligament of uterus disease","type":"exact"},{"name":"broad ligament of uterus disease or disorder","type":"exact"},{"name":"disease of broad ligament of uterus","type":"exact"},{"name":"disease or disorder of broad ligament of uterus","type":"exact"},{"name":"disorder of broad ligament","type":"exact"},{"name":"disorder of broad ligament of uterus","type":"exact"}],"termid":"MONDO:0045043","xrefs":{"Monarch":{"xref_id":"0045043"}}}


id: PBO:0053588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 613","termid":"PBO:0053588"}


id: GO:1900144
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of BMP secretion.","definition_xrefs":["GOC:sart","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell communication","termid":"GO:0010647"},{"relation_name":"is_a","term_name":"positive regulation of signaling","termid":"GO:0023056"},{"relation_name":"is_a","term_name":"positive regulation of protein secretion","termid":"GO:0050714"},{"relation_name":"is_a","term_name":"regulation of BMP secretion","termid":"GO:2001284"},{"relation_name":"positively_regulates","term_name":"BMP secretion","termid":"GO:0038055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of BMP secretion","synonyms":[{"name":"activation of BMP protein secretion","type":"narrow"},{"name":"activation of BMP secretion","type":"narrow"},{"name":"activation of bone morphogenetic protein secretion","type":"narrow"},{"name":"positive regulation of BMP protein secretion","type":"exact"},{"name":"positive regulation of bone morphogenetic protein secretion","type":"exact"},{"name":"up regulation of BMP protein secretion","type":"exact"},{"name":"up regulation of BMP secretion","type":"exact"},{"name":"up regulation of bone morphogenetic protein secretion","type":"exact"},{"name":"up-regulation of BMP protein secretion","type":"exact"},{"name":"up-regulation of BMP secretion","type":"exact"},{"name":"up-regulation of bone morphogenetic protein secretion","type":"exact"},{"name":"upregulation of BMP protein secretion","type":"exact"},{"name":"upregulation of BMP secretion","type":"exact"},{"name":"upregulation of bone morphogenetic protein secretion","type":"exact"}],"termid":"GO:1900144"}


id: PBO:0029467
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_mannose_binding","termid":"PBO:0029467"}


id: FYPO:0008289
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which a guanyl-nucleotide exchange factor activity is abnormal.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000654","FYPO:0001985","FYPO:0000661","FYPO:0000652"],"is_obsolete":false,"name":"abnormal guanyl-nucleotide exchange factor activity","synonyms":[{"name":"abnormal GEF activity","type":"exact"}],"termid":"FYPO:0008289"}


id: PBO:0036308
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3kb of 36 AA repeat","termid":"PBO:0036308"}


id: PBO:0000868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ENV10 family protein (predicted)","termid":"PBO:0000868"}


id: PBO:0087385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sterol regulatory element binding protein; regulates transcription of sterol biosynthetic genes upon sterol depletion, after relocating from intracellular membranes to perinuclear foci; redundant activator of filamentation with UPC2, up-regulating the expression of genes involved in filamentous growth; contains Zn[2]-Cys[6] binuclear cluster; ECM22 has a paralog, UPC2, that arose from the whole genome duplication","termid":"PBO:0087385"}


id: PBO:0030133
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_zinc_level","termid":"PBO:0030133"}


id: GO:0000744
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"During sexual reproduction, the creation of a single nucleus from two nuclei as a result of fusing the nuclear envelopes that surround each nuclei. This takes place following the mutual exchange of one of the two nuclei produced by the mitosis that follows the second meiotic nuclear division. This occurs in ciliated protozoans such as Tetrahymena.","definition_xrefs":["GOC:pg","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"karyogamy","termid":"GO:0000741"},{"relation_name":"part_of","term_name":"conjugation with mutual genetic exchange","termid":"GO:0000748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"karyogamy involved in conjugation with mutual genetic exchange","synonyms":[{"name":"karyogamy involved in conjugation without cellular fusion","type":"exact"}],"termid":"GO:0000744"}


id: GO:0032205
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of telomere maintenance","termid":"GO:0032204"},{"relation_name":"is_a","term_name":"negative regulation of DNA metabolic process","termid":"GO:0051053"},{"relation_name":"is_a","term_name":"negative regulation of chromosome organization","termid":"GO:2001251"},{"relation_name":"negatively_regulates","term_name":"telomere maintenance","termid":"GO:0000723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0032200"},{"rel_name":"negatively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0032200"}],"interesting_parent_ids":["GO:0032200","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"negative regulation of telomere maintenance","synonyms":[{"name":"down regulation of telomere maintenance","type":"exact"},{"name":"down-regulation of telomere maintenance","type":"exact"},{"name":"downregulation of telomere maintenance","type":"exact"},{"name":"inhibition of telomere maintenance","type":"narrow"}],"termid":"GO:0032205"}


id: MONDO:0022971
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diabetes persistent mullerian ducts","termid":"MONDO:0022971","xrefs":{"Monarch":{"xref_id":"0022971"}}}


id: PBO:0047199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 216 member B","termid":"PBO:0047199"}


id: MONDO:1010351
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Age-related macular degeneration that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinal degeneration, non-human animal","termid":"MONDO:1010326"},{"relation_name":"is_a","term_name":"perceptual disorders, non-human animal","termid":"MONDO:1011343"},{"relation_name":"is_a","term_name":"hereditary neurological disease, non-human animal","termid":"MONDO:1012972"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"age-related macular degeneration, non-human animal","secondary_identifiers":["OMIA:002142"],"termid":"MONDO:1010351","xrefs":{"Monarch":{"xref_id":"1010351"}}}


id: GO:0160268
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A histone reader that recognizes a histone H1 dimethylated at lysine 26.","definition_xrefs":["PMID:17540172"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H1 reader activity","termid":"GO:0140128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0140566"},{"rel_name":"is_a","termid":"GO:0030674"}],"interesting_parent_ids":["GO:0030674","GO:0060090","GO:0140566","GO:0003674"],"is_obsolete":false,"name":"histone H1K26me2 reader activity","termid":"GO:0160268"}


id: PBO:0027515
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_actomyosin_contractile_ring_contraction","termid":"PBO:0027515"}


id: GO:0006615
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an SRP-bound ribosome forms a complex with the SRP receptor in the ER membrane, allowing the ribosome to bind to the membrane, during cotranslational membrane targeting.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein to membrane docking","termid":"GO:0022615"},{"relation_name":"part_of","term_name":"SRP-dependent cotranslational protein targeting to membrane","termid":"GO:0006614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006605"}],"interesting_parent_ids":["GO:0006605","GO:0008150"],"is_obsolete":false,"name":"SRP-dependent cotranslational protein targeting to membrane, docking","synonyms":[{"name":"SRP-dependent cotranslational membrane targeting, docking","type":"exact"},{"name":"SRP-dependent cotranslational protein-membrane targeting, docking","type":"exact"},{"name":"protein docking during SRP-dependent cotranslational protein targeting to membrane","type":"exact"}],"termid":"GO:0006615"}


id: PR:Q10178-2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A U2 snRNP component prp10 (Schizosaccharomyces pombe 972h-) that is a translation product of some mRNA giving rise to a protein with the amino acid sequence represented by UniProtKB:Q10178-2.","definition_xrefs":["PRO:DNx","UniProtKB:Q10178"],"direct_ancestors":[{"relation_name":"is_a","term_name":"U2 snRNP component prp10 (Schizosaccharomyces pombe 972h-)","termid":"PR:Q10178"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP component prp10 isoform B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.01","secondary_identifiers":["UniProtKB:Q10178-2"],"synonyms":[{"name":"Spom972h-SF3B1/iso:B","type":"exact"}],"termid":"PR:Q10178-2"}


id: PBO:0070147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 61 pseudogene","termid":"PBO:0070147"}


id: PBO:0039811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor 4 pseudogene 2","termid":"PBO:0039811"}


id: PBO:0027241
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_binucleate_aseptate_cell","termid":"PBO:0027241"}


id: PBO:0051355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 2/OR2-7D (pseudogene)","termid":"PBO:0051355"}


id: FYPO:0004131
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of succinate dehydrogenase (ubiquinone) activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal succinate dehydrogenase (ubiquinone) activity","termid":"FYPO:0003322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000707","FYPO:0000652","FYPO:0000661","FYPO:0001985"],"is_obsolete":false,"name":"increased succinate dehydrogenase (ubiquinone) activity","termid":"FYPO:0004131"}


id: PBO:0088033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-binding endonuclease involved in mRNA decay; recruited to stalled ribosomes to promote breakdown of transcript body of nuclear-transcribed mRNA with stalls in translation elongation; cleaves mRNA within A site of colliding ribosome; has two CUE domains that bind ubiquitin, which may facilitate intramolecular monoubiquitination","termid":"PBO:0088033"}


id: PBO:0076184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfatase modifying factor 2","termid":"PBO:0076184"}


id: MONDO:0001020
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Decreased vision that results from abnormal visual development.","definition_xrefs":["NCIT:C118764"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vision disorder","termid":"MONDO:0021084"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amblyopia","secondary_identifiers":["MEDGEN:8009","HP:0000646","DOID:10376","UMLS:C0002418","CSP:1114-9655","ICD9:368.00","SCTID:387742006","MESH:D000550"],"synonyms":[{"name":"amblyopia","type":"exact"},{"name":"amblyopia (disease)","type":"exact"},{"name":"lazy eye","type":"related"}],"termid":"MONDO:0001020","xrefs":{"Monarch":{"xref_id":"0001020"}}}


id: PBO:0043544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type I alpha 1 chain","termid":"PBO:0043544"}


id: SO:0002158
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene cassette array containing H- mating type specific information.","definition_xrefs":["PMID:18354497"],"direct_ancestors":[{"relation_name":"is_a","term_name":"silent_mating_type_cassette_array","termid":"SO:0001984"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mat3M","termid":"SO:0002158"}


id: PBO:0004704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme Ubc8 (predicted)","termid":"PBO:0004704"}


id: GO:0003924
data:
  {"annotated_genes":["SJAG_02331","SJAG_03846","SJAG_00457","SJAG_02265","SJAG_01277","SJAG_05332","SJAG_03371","SJAG_03342","SJAG_05030","SJAG_02302","SJAG_00344","SJAG_02640","SJAG_02366","SJAG_04470","SJAG_01339","SJAG_03374","SJAG_01558","SJAG_00226","SJAG_03676","SJAG_04679","SJAG_04157","SJAG_03137","SJAG_02856","SJAG_04666","SJAG_01379","SJAG_02684","SJAG_02848","SJAG_04940","SJAG_01929","SJAG_02595","SJAG_00663","SJAG_01696","SJAG_01391","SJAG_00031","SJAG_02384","SJAG_01449","SJAG_04004","SJAG_02605","SJAG_01438","SJAG_03684","SJAG_00466","SJAG_01655","SJAG_00923","SJAG_01456","SJAG_04351","SJAG_03453","SJAG_00231","SJAG_02824","SJAG_03915","SJAG_00424","SJAG_04343","SJAG_02292","SJAG_03688","SJAG_02180","SJAG_02444","SJAG_02601","SJAG_04862","SJAG_03072","SJAG_04003","SJAG_02656","SJAG_00906","SJAG_04531","SJAG_01851","SJAG_03732","SJAG_02353","SJAG_04509","SJAG_00430","SJAG_04375","SJAG_00414","SJAG_03461","SJAG_00065","SJAG_00659","SJAG_02233","SJAG_02171","SJAG_01774","SJAG_00983","SJAG_01769"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[58160,59898,60887,61528,62107,63785,65319,66401,66732,67630,68110,68185,68961,68973,70852,71105,71778,71805,72066,72486,72563,72812,73143,73226,73273,73460,74104,74135,74293,74465,74639,75061,75092,75807,75973,76181,76191,76414,76558,76678,76969,77328,77641,77671,77928,78170,78216,78827,78849,79107,79229,79256,79281,79583,79606,79723,80173,81130,81493,81584,81909,82173,82190,82246,98010,100221,101570,103183,105524,109415,115981,120529],"is_not":false,"summary":null,"term":"GO:0003924"},{"annotations":[71146,92737],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003925"},{"annotations":[106619],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061791"},{"annotations":[104719,101899],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990606"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: GTP + H2O = GDP + H+ + phosphate.","definition_xrefs":["PMID:26832457","PMID:27218782"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoside triphosphate phosphatase 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activity","type":"narrow"},{"name":"protein-synthesizing GTPase activity, elongation","type":"narrow"},{"name":"protein-synthesizing GTPase activity, initiation","type":"narrow"},{"name":"protein-synthesizing GTPase activity, termination","type":"narrow"},{"name":"signal-recognition-particle GTPase activity","type":"narrow"},{"name":"small monomeric GTPase activity","type":"narrow"},{"name":"tubulin GTPase activity","type":"narrow"}],"termid":"GO:0003924","terms_by_termid":{"GO:0003924":null,"GO:0003925":null,"GO:0061791":null,"GO:1990606":null}}


id: GO:0016095
data:
  {"annotated_genes":["SJAG_04954"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[62347],"is_not":false,"summary":null,"term":"GO:0016095"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of polyprenols, prenols with more than 4 isoprenoid residues, which may be all-trans, or a mixture of cis and trans.","definition_xrefs":["GOC:go_curators","Wikipedia:Polyprenol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid catabolic process","termid":"GO:0008300"},{"relation_name":"is_a","term_name":"polyprenol metabolic process","termid":"GO:0016093"},{"relation_name":"is_a","term_name":"alcohol catabolic process","termid":"GO:0046164"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04954":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"polyprenol catabolic process","references_by_uniquename":{"GO_REF:0000104":null},"synonyms":[{"name":"polyprenol breakdown","type":"exact"},{"name":"polyprenol catabolism","type":"exact"},{"name":"polyprenol degradation","type":"exact"}],"termid":"GO:0016095","terms_by_termid":{"GO:0016095":null}}


id: PBO:0088718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pescadillo-family BRCT domain protein Ppp1","termid":"PBO:0088718"}


id: PBO:0081427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 281","termid":"PBO:0081427"}


id: MONDO:0000551
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neuroblastoma that involves the retroperitoneal space.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuroblastoma","termid":"MONDO:0005072"},{"relation_name":"is_a","term_name":"retroperitoneal neoplasm","termid":"MONDO:0024645"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retroperitoneal neuroblastoma","secondary_identifiers":["MEDGEN:1843500","UMLS:C2211613","DOID:0050937"],"synonyms":[{"name":"neuroblastoma of retroperitoneal space","type":"exact"},{"name":"retroperitoneal space neuroblastoma","type":"exact"}],"termid":"MONDO:0000551","xrefs":{"Monarch":{"xref_id":"0000551"}}}


id: MONDO:0016748
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hemangioblastoma is a rare, benign, highly vascularized tumor of the central nervous system, most often located in the cerebellum or spinal cord, presenting in adulthood and manifesting with dizziness, nausea, malaise, headache, bladder or bowel dysfunction, numbness, weakness and pain in the upper or lower extremities, and often associated with von Hippel-Lindau disease (VHL). Exceptional cases of hemangioblastoma arising outside of the central nervous system have been reported.","definition_xrefs":["Orphanet:252054"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system benign neoplasm","termid":"MONDO:0000648"},{"relation_name":"is_a","term_name":"capillary hemangioma","termid":"MONDO:0002407"},{"relation_name":"is_a","term_name":"neurovascular disorder","termid":"MONDO:0043218"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemangioblastoma","secondary_identifiers":["DOID:5241","MEDGEN:104929","MedDRA:10018813","MESH:D018325","ICDO:9161/1","ICD10CM:D33.4","ONCOTREE:HMBL","GARD:8232","NCIT:C3801","UMLS:C0206734"],"synonyms":[{"name":"HMBL","type":"related"},{"name":"angioblastoma","type":"exact"},{"name":"capillary hemangioblastoma","type":"exact"},{"name":"hemangioblastoma","type":"exact"}],"termid":"MONDO:0016748","xrefs":{"Monarch":{"xref_id":"0016748"}}}


id: MONDO:0014894
data:
  {"annotated_genes":["SJAG_00327"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87972],"is_not":false,"summary":null,"term":"MONDO:0014894"}]},"cv_name":"mondo","definition":"Any Meier-Gorlin syndrome in which the cause of the disease is a mutation in the CDC45 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Meier-Gorlin syndrome","termid":"MONDO:0016817"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00327":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Meier-Gorlin syndrome 7","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:617063","MEDGEN:934705","UMLS:C4310738","DOID:0080518","GARD:16181"],"synonyms":[{"name":"CDC45 Meier-Gorlin syndrome","type":"exact"},{"name":"MGORS7","type":"exact"},{"name":"Meier-Gorlin syndrome 7","type":"exact"},{"name":"Meier-Gorlin syndrome 7; MGORS7","type":"exact"},{"name":"Meier-Gorlin syndrome caused by mutation in CDC45","type":"exact"},{"name":"Meier-Gorlin syndrome type 7","type":"exact"}],"termid":"MONDO:0014894","terms_by_termid":{"MONDO:0014894":null},"xrefs":{"Monarch":{"xref_id":"0014894"}}}


id: PR:O13969
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC24C9.09 gene.","definition_xrefs":["UniProtKB:O13969","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"threonine--tRNA ligase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC24C9.09","synonyms":[{"name":"Spom972h-SPAC24C9.09","type":"exact"},{"name":"ThrRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"threonyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13969"}


id: MONDO:0005843
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm involving the mediastinum","direct_ancestors":[{"relation_name":"is_a","term_name":"thoracic cancer","termid":"MONDO:0003274"},{"relation_name":"is_a","term_name":"neoplasm of mediastinum","termid":"MONDO:0021386"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"mediastinal cancer","secondary_identifiers":["MEDGEN:56308","UMLS:C0153504","SCTID:363494000","ICD9:164.9","EFO:0007362","MESH:D008479","NCIT:C3549","DOID:5559"],"synonyms":[{"name":"cancer of mediastinum","type":"exact"},{"name":"cancer of the mediastinum","type":"exact"},{"name":"malignant mediastinal neoplasm","type":"exact"},{"name":"malignant mediastinal tumor","type":"exact"},{"name":"malignant mediastinal tumour","type":"exact"},{"name":"malignant mediastinum neoplasm","type":"exact"},{"name":"malignant neoplasm of mediastinum","type":"exact"},{"name":"malignant neoplasm of the mediastinum","type":"exact"},{"name":"malignant tumor of mediastinum","type":"exact"},{"name":"malignant tumor of the mediastinum","type":"exact"},{"name":"malignant tumour of mediastinum","type":"exact"},{"name":"malignant tumour of the mediastinum","type":"exact"},{"name":"mediastinal cancer","type":"exact"},{"name":"mediastinal tumor","type":"broad"},{"name":"mediastinal tumour","type":"broad"},{"name":"mediastinum cancer","type":"exact"},{"name":"tumor of mediastinum","type":"broad"},{"name":"tumour of mediastinum","type":"broad"}],"termid":"MONDO:0005843","xrefs":{"Monarch":{"xref_id":"0005843"}}}


id: PATO:0000524
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000524 plant growth hormone sensitivity value (obsolete PATO:0000524)","termid":"PATO:0000524"}


id: PBO:0066622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RIC3 acetylcholine receptor chaperone","termid":"PBO:0066622"}


id: PBO:0069164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 416, pseudogene","termid":"PBO:0069164"}


id: PBO:0000944
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae CDC9","termid":"PBO:0000944"}


id: MONDO:0022755
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"monosomy","termid":"MONDO:0020639"},{"relation_name":"is_a","term_name":"chromosome 18 disorder","termid":"MONDO:0700125"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 18 mosaic monosomy","secondary_identifiers":["MESH:C536581","UMLS:C2931250","MEDGEN:419755"],"synonyms":[{"name":"Mosaic monosomy 18","type":"related"},{"name":"Mosaic monosomy chromosome 18","type":"related"},{"name":"monosomy 18 mosaicism","type":"related"}],"termid":"MONDO:0022755","xrefs":{"Monarch":{"xref_id":"0022755"}}}


id: FYPO:0002349
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which stress granule assembly begins later than normal.","definition_xrefs":["PMID:21098141","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal stress granule assembly during vegetative growth","termid":"FYPO:0002347"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"delayed onset of stress granule assembly during vegetative growth","synonyms":[{"name":"delayed onset of cytoplasmic stress granule assembly during vegetative growth","type":"exact"},{"name":"delayed onset of stress granule assembly during mitotic cell cycle","type":"related"},{"name":"delayed onset of stress granule formation during vegetative growth","type":"exact"},{"name":"delayed stress granule assembly during vegetative growth","type":"exact"}],"termid":"FYPO:0002349"}


id: PBO:0045618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 29 (pseudogene)","termid":"PBO:0045618"}


id: GO:0051388
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the neurotrophin TRK receptor signaling pathway.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of neurotrophin TRK receptor signaling pathway","termid":"GO:0051386"},{"relation_name":"positively_regulates","term_name":"neurotrophin TRK receptor signaling pathway","termid":"GO:0048011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of neurotrophin TRK receptor signaling pathway","secondary_identifiers":["Reactome:R-HSA-9025046","Reactome:R-HSA-9026357","Reactome:R-HSA-9034013","Reactome:R-HSA-9024909","Reactome:R-HSA-9034793"],"synonyms":[{"name":"activation of nerve growth factor receptor signaling pathway","type":"narrow"},{"name":"positive regulation of NGF receptor signaling pathway","type":"exact"},{"name":"positive regulation of NGF receptor signalling pathway","type":"exact"},{"name":"positive regulation of nerve growth factor receptor signaling pathway","type":"related"},{"name":"positive regulation of nerve growth factor receptor signalling pathway","type":"exact"},{"name":"stimulation of nerve growth factor receptor signaling pathway","type":"narrow"},{"name":"up regulation of nerve growth factor receptor signaling pathway","type":"exact"},{"name":"up-regulation of nerve growth factor receptor signaling pathway","type":"exact"},{"name":"upregulation of nerve growth factor receptor signaling pathway","type":"exact"}],"termid":"GO:0051388"}


id: MONDO:0001627
data:
  {"annotated_genes":["SJAG_03866","SJAG_01356","SJAG_02084","SJAG_02119","SJAG_02196","SJAG_02518","SJAG_05277","SJAG_03052","SJAG_02377","SJAG_02885","SJAG_00526","SJAG_04489","SJAG_01229","SJAG_03345","SJAG_00115","SJAG_03692","SJAG_16459","SJAG_02716","SJAG_00233","SJAG_04757","SJAG_00421","SJAG_00686","SJAG_01317","SJAG_05332","SJAG_00087","SJAG_01179","SJAG_01438"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88643],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011397"},{"annotations":[87066],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014628"},{"annotations":[88009],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013886"},{"annotations":[88272,88273],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008083"},{"annotations":[87292,87291],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008695"},{"annotations":[88589],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013501"},{"annotations":[87159],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010936"},{"annotations":[87765],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013584"},{"annotations":[88567],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008178"},{"annotations":[88790,88789],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011706"},{"annotations":[88775],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010476"},{"annotations":[87469],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014290"},{"annotations":[88969],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0958231"},{"annotations":[87677],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008767"},{"annotations":[87829],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0033482"},{"annotations":[87740],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0016163"},{"annotations":[87516],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011330"},{"annotations":[87081],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011439"},{"annotations":[87594],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011781"},{"annotations":[89133],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008458"},{"annotations":[87031,87032],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012246"},{"annotations":[87017],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012450"},{"annotations":[87479,87478],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007574"},{"annotations":[87673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013594"},{"annotations":[88130,88129],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014417"},{"annotations":[89020],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014934"}]},"cv_name":"mondo","definition":"Loss of intellectual abilities interfering with an individual's social and occupational functions. Causes include Alzheimer's disease, brain injuries, brain tumors, and vascular disorders.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cognitive disorder","termid":"MONDO:0002039"}],"gene_count":27,"genes_by_uniquename":{"SJAG_00087":null,"SJAG_00115":null,"SJAG_00233":null,"SJAG_00421":null,"SJAG_00526":null,"SJAG_00686":null,"SJAG_01179":null,"SJAG_01229":null,"SJAG_01317":null,"SJAG_01356":null,"SJAG_01438":null,"SJAG_02084":null,"SJAG_02119":null,"SJAG_02196":null,"SJAG_02377":null,"SJAG_02518":null,"SJAG_02716":null,"SJAG_02885":null,"SJAG_03052":null,"SJAG_03345":null,"SJAG_03692":null,"SJAG_03866":null,"SJAG_04489":null,"SJAG_04757":null,"SJAG_05277":null,"SJAG_05332":null,"SJAG_16459":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0002039"],"is_obsolete":false,"name":"dementia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:1307","MESH:D003704","NCIT:C4786","ICD9:294.1","icd11.foundation:546689346","UMLS:C0497327","HP:0000726","ICD9:290.8","ICD9:294.8","SCTID:52448006","MEDGEN:99229"],"synonyms":[{"name":"dementia","type":"exact"},{"name":"dementia (disease)","type":"exact"}],"termid":"MONDO:0001627","terms_by_termid":{"MONDO:0007574":null,"MONDO:0008083":null,"MONDO:0008178":null,"MONDO:0008458":null,"MONDO:0008695":null,"MONDO:0008767":null,"MONDO:0010476":null,"MONDO:0010936":null,"MONDO:0011330":null,"MONDO:0011397":null,"MONDO:0011439":null,"MONDO:0011706":null,"MONDO:0011781":null,"MONDO:0012246":null,"MONDO:0012450":null,"MONDO:0013501":null,"MONDO:0013584":null,"MONDO:0013594":null,"MONDO:0013886":null,"MONDO:0014290":null,"MONDO:0014417":null,"MONDO:0014628":null,"MONDO:0014934":null,"MONDO:0016163":null,"MONDO:0033482":null,"MONDO:0958231":null},"xrefs":{"Monarch":{"xref_id":"0001627"}}}


id: PBO:0030665
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_5.8S_rRNA_level","termid":"PBO:0030665"}


id: MONDO:0859238
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hypoalphalipoproteinemia, primary, 2","termid":"MONDO:0032766"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypoalphalipoproteinemia, primary, 2, intermediate","secondary_identifiers":["OMIM:619836","MEDGEN:1801755","UMLS:C5677030"],"termid":"MONDO:0859238","xrefs":{"Monarch":{"xref_id":"0859238"}}}


id: MOD:00003
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Entry from Unimod.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uncategorized protein modification","termid":"MOD:00032"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Unimod","termid":"MOD:00003"}


id: GO:0044222
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An intracytoplasmic membrane-bounded compartment in anaerobic ammonium oxidation (anammox) bacteria, is the site of anammox catabolism.","definition_xrefs":["GOC:dh","PMID:17993524","PMID:19682260"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"anammoxosome","termid":"GO:0044222"}


id: PBO:0086363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative aldose 1-epimerase","termid":"PBO:0086363"}


id: PBO:0086097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and fragmented vacuoles; deletion mutant has increased glycogen accumulation and displays elongated buds; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; ENV11 has a paralog, VID22, that arose from the whole genome duplication","termid":"PBO:0086097"}


id: PBO:0090553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-K ortholog Sim4","termid":"PBO:0090553"}


id: GO:0034074
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: oxidosqualene = marneral.","definition_xrefs":["GOC:cb","PMID:16425307","PMID:18033581"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidosqualene cyclase activity","termid":"GO:0031559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"marneral synthase activity","secondary_identifiers":["RHEA:31875","MetaCyc:RXN-9664"],"termid":"GO:0034074"}


id: MONDO:0000033
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete frontonasal dysplasia (obsolete MONDO:0000033)","termid":"MONDO:0000033","xrefs":{"Monarch":{"xref_id":"0000033"}}}


id: PBO:0047887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, folic acid type, rare, fra(6)(p23)","termid":"PBO:0047887"}


id: PBO:0029190
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_vacuolar_import","termid":"PBO:0029190"}


id: GO:0052840
data:
  {"annotated_genes":["SJAG_01154"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77866],"is_not":false,"summary":null,"term":"GO:0052840"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: diphospho-1D-myo-inositol tetrakisphosphate + H2O = 1D-myo-inositol pentakisphosphate + phosphate.","definition_xrefs":["PMID:11502751","PMID:10827188"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diphosphoinositol-polyphosphate diphosphatase activity","termid":"GO:0008486"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01154":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"inositol diphosphate tetrakisphosphate diphosphatase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-1855166","MetaCyc:RXN-10963"],"termid":"GO:0052840","terms_by_termid":{"GO:0052840":null}}


id: PBO:0053633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 680","termid":"PBO:0053633"}


id: PBO:0074509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small NF90 (ILF3) associated RNA A1","termid":"PBO:0074509"}


id: GO:0051464
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the regulated release of cortisol from a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cortisol secretion","termid":"GO:0051462"},{"relation_name":"is_a","term_name":"positive regulation of glucocorticoid secretion","termid":"GO:2000851"},{"relation_name":"positively_regulates","term_name":"cortisol secretion","termid":"GO:0043400"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of cortisol secretion","synonyms":[{"name":"activation of cortisol secretion","type":"narrow"},{"name":"stimulation of cortisol secretion","type":"narrow"},{"name":"up regulation of cortisol secretion","type":"exact"},{"name":"up-regulation of cortisol secretion","type":"exact"},{"name":"upregulation of cortisol secretion","type":"exact"}],"termid":"GO:0051464"}


id: RO:HOM0000003
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Similarity that is characterized by the organization of anatomical structures through the expression of homologous or identical patterning genes.","direct_ancestors":[{"relation_name":"is_a","term_name":"evolutionarily_related_to","termid":"RO:0002320"},{"relation_name":"is_a","term_name":"in_similarity_relationship_with","termid":"RO:HOM0000000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_homocracy_relationship_with","synonyms":[{"name":"homocracous to","type":"exact"}],"termid":"RO:HOM0000003"}


id: GO:0061928
data:
  {"annotated_genes":["SJAG_00903"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78414],"is_not":false,"summary":null,"term":"GO:0061928"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: glutathione = 5-oxoproline + L-cysteinylglycine.","definition_xrefs":["PMID:23070364","PMID:27913623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amidine-lyase activity","termid":"GO:0016842"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00903":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"glutathione specific gamma-glutamylcyclotransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["RHEA:47724","EC:4.3.2.7"],"termid":"GO:0061928","terms_by_termid":{"GO:0061928":null}}


id: PBO:0067335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 428, pseudogene","termid":"PBO:0067335"}


id: PBO:0070271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, variant U1 small nuclear 6","termid":"PBO:0070271"}


id: PBO:0040203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antisense transcript of PTP4A3, liver carcinoma survival associated","termid":"PBO:0040203"}


id: PBO:0074941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 105B","termid":"PBO:0074941"}


id: GO:1902380
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of endoribonuclease activity.","definition_xrefs":["GOC:bf","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of endoribonuclease activity (obsolete GO:1902380)","synonyms":[{"name":"activation of endonuclease G activity","type":"related"},{"name":"activation of endoribonuclease activity","type":"narrow"},{"name":"positive regulation of endonuclease G activity","type":"related"},{"name":"up regulation of endonuclease G activity","type":"related"},{"name":"up regulation of endoribonuclease activity","type":"exact"},{"name":"up-regulation of endonuclease G activity","type":"related"},{"name":"up-regulation of endoribonuclease activity","type":"exact"},{"name":"upregulation of endonuclease G activity","type":"related"},{"name":"upregulation of endoribonuclease activity","type":"exact"}],"termid":"GO:1902380"}


id: PATO:0001375
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A ploidy quality inhering in a bearer by virtue of the bearer's containing a single set of homologous chromosomes.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Haploid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"euploid","termid":"PATO:0001393"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"haploid","termid":"PATO:0001375"}


id: GO:0051516
data:
  {"annotated_genes":["SJAG_00514","SJAG_02169","SJAG_03581","SJAG_02392","SJAG_00244"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117069],"is_not":false,"summary":null,"term":"GO:0051516"},{"annotations":[91744,97759,96484],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051519"},{"annotations":[92607],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051517"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of bipolar cell growth, polarized growth from both ends of a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of unidimensional cell growth","termid":"GO:0051510"},{"relation_name":"regulates","term_name":"bipolar cell growth","termid":"GO:0042815"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_00514":null,"SJAG_02169":null,"SJAG_02392":null,"SJAG_03581":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of bipolar cell growth","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0051516","terms_by_termid":{"GO:0051516":null,"GO:0051517":null,"GO:0051519":null}}


id: PBO:0046484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERCC6L2 antisense RNA 1","termid":"PBO:0046484"}


id: MONDO:0006586
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition in which patients produce skin lesions through repetitive, compulsive excoriation of their skin.","definition_xrefs":["EFO:1000741"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dermatitis","termid":"MONDO:0002406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"neurotic excoriation","secondary_identifiers":["MEDGEN:697535","UMLS:C1274184","Wikipedia:Neurotic_excoriations","DOID:9165","ICD9:300.19","SCTID:402736003","ICD9:698.4"],"synonyms":[{"name":"dermatitis artefacta","type":"exact"},{"name":"dermatitis factitia","type":"exact"},{"name":"dermatitis factitia [artefacta]","type":"exact"},{"name":"dermatitis ficta","type":"exact"},{"name":"factitious skin disease","type":"exact"}],"termid":"MONDO:0006586","xrefs":{"Monarch":{"xref_id":"0006586"}}}


id: GO:0061913
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of the multiplication or reproduction of chondrocytes in a growing endochondral bone, resulting in the expansion of a cell population.","definition_xrefs":["PMID:19264869"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of growth plate cartilage chondrocyte proliferation","termid":"GO:0003420"},{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"positively_regulates","term_name":"growth plate cartilage chondrocyte proliferation","termid":"GO:0003419"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of growth plate cartilage chondrocyte proliferation","termid":"GO:0061913"}


id: GO:0070684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The reproductive process in which coagulated semen becomes liquid following ejaculation, allowing the progressive release of motile spermatozoa.","definition_xrefs":["GOC:mah","PMID:18482984"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"},{"relation_name":"part_of","term_name":"insemination","termid":"GO:0007320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"seminal clot liquefaction","synonyms":[{"name":"semen liquefaction","type":"exact"}],"termid":"GO:0070684"}


id: PR:Q9Y7J4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An actin-related protein 2/3 complex subunit 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12391:SF0","OMA:SCHPO03569","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin-related protein 2/3 complex subunit 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1778.08c","secondary_identifiers":["UniProtKB:Q9Y7J4"],"synonyms":[{"name":"Spom972h-ARPC3","type":"exact"},{"name":"arp2/3 complex 21 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"p21-ARC (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9Y7J4"}


id: GO:0035554
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The signaling process in which signaling from the receptor ROBO is brought to an end, rather than being reversibly modulated.","definition_xrefs":["GOC:vk","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"termination of signal transduction","termid":"GO:0023021"},{"relation_name":"is_a","term_name":"negative regulation of Roundabout signaling pathway","termid":"GO:0035387"},{"relation_name":"part_of","term_name":"Roundabout signaling pathway","termid":"GO:0035385"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"termination of Roundabout signal transduction","termid":"GO:0035554"}


id: PR:Q9Y7I8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- zuo1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7I8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zuotin (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1778.01c","synonyms":[{"name":"DnaJ-related protein zuo1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"J protein zuo1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-zuo1","type":"exact"},{"name":"ribosome-associated complex subunit zuo1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9Y7I8"}


id: FYPO:0000835
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell is lower than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered protein level","termid":"FYPO:0000834"},{"relation_name":"is_a","term_name":"decreased level of substance in cell","termid":"FYPO:0000991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0006551"],"is_obsolete":false,"name":"decreased protein level","synonyms":[{"name":"decreased protein accumulation","type":"related"},{"name":"protein/peptide accumulation: decreased","type":"related"},{"name":"reduced protein level","type":"exact"}],"termid":"FYPO:0000835"}


id: PBO:0031295
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_plasma_membrane_sterol_distribution","termid":"PBO:0031295"}


id: GO:0034424
data:
  {"annotated_genes":["SJAG_07012","SJAG_03511"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[77080,100791],"is_not":false,"summary":null,"term":"GO:0034424"}]},"cv_name":"cellular_component","definition":"A membrane-associated protein complex that is required for a late stage of endosomal transport. In budding yeast, this complex consists of Vps55p and Vps68p proteins.","definition_xrefs":["PMID:18216282"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"part_of","term_name":"endosome membrane","termid":"GO:0010008"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03511":null,"SJAG_07012":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005768"}],"interesting_parent_ids":["GO:0032991","GO:0031410","GO:0005575","GO:0005737","GO:0005768"],"is_obsolete":false,"name":"Vps55/Vps68 complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0034424","terms_by_termid":{"GO:0034424":null}}


id: PBO:0047694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FLVCR1 divergent transcript","termid":"PBO:0047694"}


id: GO:0018495
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-hydroxycyclohexane-1-carboxyl-CoA = 2 H+ + 2 e- + 2-ketocyclohexane-1-carboxyl-CoA.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-hydroxycyclohexane-1-carboxyl-CoA dehydrogenase activity (obsolete GO:0018495)","termid":"GO:0018495"}


id: PBO:0077544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 255A","termid":"PBO:0077544"}


id: FYPO:0005734
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of glutamate dehydrogenase activity using NAPD+ as a cofactor is decreased during a cellular response to iron ion starvation.","definition_xrefs":["PMID:20435771","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased glutamate dehydrogenase (NADP+) activity","termid":"FYPO:0000983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0001985","FYPO:0000661","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"decreased glutamate dehydrogenase (NADP+) activity during cellular response to iron ion starvation","synonyms":[{"name":"decreased NAD(P)H-dependent glutamate dehydrogenase activity during cellular response to iron ion starvation","type":"exact"},{"name":"decreased NADP-GDH activity during cellular response to iron ion starvation","type":"exact"},{"name":"decreased glutamate dehydrogenase (NADP+) activity during iron ion starvation","type":"exact"}],"termid":"FYPO:0005734"}


id: MONDO:0044215
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete arm folding preference (obsolete MONDO:0044215)","secondary_identifiers":["OMIM:107850"],"synonyms":[{"name":"ARM folding preference","type":"related"}],"termid":"MONDO:0044215","xrefs":{"Monarch":{"xref_id":"0044215"}}}


id: PBO:0060580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NBPF member 17, pseudogene","termid":"PBO:0060580"}


id: PBO:0071631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 50","termid":"PBO:0071631"}


id: GO:1905557
data:
  {"annotated_genes":["SJAG_00840","SJAG_00680"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95733,105613],"is_not":false,"summary":null,"term":"GO:1905557"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mitotic nuclear envelope disassembly.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:18765790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane disassembly","termid":"GO:0010549"},{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"regulates","term_name":"mitotic nuclear membrane disassembly","termid":"GO:0007077"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00680":null,"SJAG_00840":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0061024"],"is_obsolete":false,"name":"regulation of mitotic nuclear envelope disassembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of mitotic nuclear envelope breakdown","type":"exact"},{"name":"regulation of mitotic nuclear envelope catabolism","type":"exact"},{"name":"regulation of mitotic nuclear envelope degradation","type":"exact"}],"termid":"GO:1905557","terms_by_termid":{"GO:1905557":null}}


id: MONDO:0016003
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An disease or disorder caused by infection with Ehrlichia.","definition_xrefs":["MONDO:patterns/specific_infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary bacterial infectious disease","termid":"MONDO:0000314"},{"relation_name":"is_a","term_name":"Anaplasmataceae infectious disease","termid":"MONDO:0006922"},{"relation_name":"is_a","term_name":"tick-borne infectious disease","termid":"MONDO:0025294"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ehrlichiosis","secondary_identifiers":["GARD:2092","DOID:10242","ICD9:082.4","MEDGEN:39039","Orphanet:1902","icd11.foundation:1116297863","SCTID:240626005","UMLS:C0085399","ICD9:082.40","MESH:D016873"],"synonyms":[{"name":"human ehrlichiosis","type":"exact"}],"termid":"MONDO:0016003","xrefs":{"Monarch":{"xref_id":"0016003"}}}


id: PBO:0057103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 195","termid":"PBO:0057103"}


id: PBO:0065641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase non-receptor type 20","termid":"PBO:0065641"}


id: GO:0051912
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: coenzyme B + coenzyme M + methanophenazine = N-{7-[(2-sulfoethyl)dithio]heptanoyl}-3-O-phospho-L-threonine + dihydromethanophenazine.","definition_xrefs":["RHEA:18085"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors","termid":"GO:0016667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"CoB--CoM heterodisulfide reductase activity","secondary_identifiers":["MetaCyc:1.8.98.1-RXN","EC:1.8.98.1"],"synonyms":[{"name":"CoB-CoM heterodisulfide reductase activity","type":"exact"},{"name":"coenzyme B--coenzyme M heterodisulfide reductase activity","type":"exact"},{"name":"coenzyme B:coenzyme M:methanophenazine oxidoreductase activity","type":"related"},{"name":"coenzyme-M-7-mercaptoheptanoylthreonine-phosphate-heterodisulfide hydrogenase activity","type":"related"},{"name":"heterodisulfide reductase activity","type":"broad"},{"name":"soluble heterodisulfide reductase activity","type":"related"}],"termid":"GO:0051912"}


id: GO:0140855
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: histone H3-serine (position 57) + ATP = histone H3-phosphoserine (position 57) + ADP. This reaction is the addition of a phosphate group to the serine residue at position 57 of histone H3.","definition_xrefs":["PMID:24820035"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"},{"relation_name":"is_a","term_name":"histone H3 kinase activity","termid":"GO:0140996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0140096","GO:0004672","GO:0016740","GO:0003674","GO:0016301","GO:0003824"],"is_obsolete":false,"name":"histone H3S57 kinase activity","synonyms":[{"name":"histone kinase activity (H3-S57 specific)","type":"exact"},{"name":"histone serine kinase activity (H3-S57 specific)","type":"exact"},{"name":"histone-serine kinase activity (H3-S57 specific)","type":"exact"}],"termid":"GO:0140855"}


id: GO:0000727
data:
  {"annotated_genes":["SJAG_00884","SJAG_01044","SJAG_00696","SJAG_03160","SJAG_05180","SJAG_02348","SJAG_01762","SJAG_04995","SJAG_00327","SJAG_04210","SJAG_01624","SJAG_01354","SJAG_00857"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71678,72719,73749,75167,75206,76103,76499,79166,80056,81764,82046,101208,114037],"is_not":false,"summary":null,"term":"GO:0000727"}]},"cv_name":"biological_process","definition":"The error-free repair of a double-strand break in DNA in which the centromere-proximal end of a broken chromosome searches for a homologous region in an intact chromosome. DNA synthesis initiates from the 3' end of the invading DNA strand, using the intact chromosome as the template, and progresses to the end of the chromosome.","definition_xrefs":["PMID:10357855","GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"double-strand break repair via homologous recombination","termid":"GO:0000724"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00327":null,"SJAG_00696":null,"SJAG_00857":null,"SJAG_00884":null,"SJAG_01044":null,"SJAG_01354":null,"SJAG_01624":null,"SJAG_01762":null,"SJAG_02348":null,"SJAG_03160":null,"SJAG_04210":null,"SJAG_04995":null,"SJAG_05180":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006281"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0006281","GO:0006310"],"is_obsolete":false,"name":"double-strand break repair via break-induced replication","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0000727","terms_by_termid":{"GO:0000727":null}}


id: GO:0150021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of an apical dendrite are generated and organized.","definition_xrefs":["GOC:bc","PMID:22683681","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dendrite morphogenesis","termid":"GO:0048813"},{"relation_name":"part_of","term_name":"apical dendrite development","termid":"GO:0150022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"apical dendrite morphogenesis","termid":"GO:0150021"}


id: PBO:0067763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 63","termid":"PBO:0067763"}


id: PR:P07799
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- top1 gene.","definition_xrefs":["UniProtKB:P07799","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA topoisomerase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1703.14c","synonyms":[{"name":"DNA topoisomerase I (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-top1","type":"exact"}],"termid":"PR:P07799"}


id: PBO:0015702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair ligase Lig4","termid":"PBO:0015702"}


id: PBO:0066389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecQ like helicase 5","termid":"PBO:0066389"}


id: MONDO:1011919
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive system disorder, non-human animal","termid":"MONDO:1011354"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"androgen insensitivity syndrome, non-human animal","secondary_identifiers":["OMIA:000991"],"synonyms":[{"name":"AIS","type":"exact"}],"termid":"MONDO:1011919","xrefs":{"Monarch":{"xref_id":"1011919"}}}


id: PBO:0055068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2484","termid":"PBO:0055068"}


id: PBO:0085939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; mtc6 is synthetically sick with cdc13-1; SWAT-GFP and mCherry fusion proteins localize to the vacuole while SWAT-GFP fusion also localizes to the endoplasmic reticulum","termid":"PBO:0085939"}


id: GO:0018357
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The linkage of the chromophore phycourobilin to phycoerythrins via phycourobilin-bis-L-cysteine.","definition_xrefs":["RESID:AA0260"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-phycourobilin linkage via phycourobilin-bis-L-cysteine (obsolete GO:0018357)","termid":"GO:0018357"}


id: GO:0008209
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving androgens, C19 steroid hormones that can stimulate the development of male sexual characteristics.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid metabolic process","termid":"GO:0008202"},{"relation_name":"is_a","term_name":"hormone metabolic process","termid":"GO:0042445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"androgen metabolic process","synonyms":[{"name":"androgen metabolism","type":"exact"}],"termid":"GO:0008209"}


id: PBO:0048073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin heavy chain 1 pseudogene 24","termid":"PBO:0048073"}


id: MOD:01617
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-(6-phosphomannosyl)-L-threonine.","definition_xrefs":["RESID:AA0514","PubMed:20044576"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosyl-L-threonine","termid":"MOD:00005"},{"relation_name":"is_a","term_name":"mannosylated residue","termid":"MOD:00595"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O-(6-phosphomannosyl)-L-threonine","synonyms":[{"name":"(2S,3R)-2-amino-3-[6-phosphonooxy-alpha-D-mannopyranosyloxy]butanoic acid","type":"exact"},{"name":"CARBOHYD O-linked (Man6P) threonine","type":"exact"},{"name":"O-(6-phosphomannosyl)-L-threonine","type":"exact"},{"name":"O3-(6-phosphomannosyl)threonine","type":"exact"}],"termid":"MOD:01617"}


id: MONDO:0020350
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Miller-Fisher syndrome (obsolete MONDO:0020350)","termid":"MONDO:0020350","xrefs":{"Monarch":{"xref_id":"0020350"}}}


id: GO:0032806
data:
  {"annotated_genes":["SJAG_01207","SJAG_03061","SJAG_01213","SJAG_01149","SJAG_03967","SJAG_04368","SJAG_00901","SJAG_02057","SJAG_04420","SJAG_03618","SJAG_00995","SJAG_00150","SJAG_00758","SJAG_00512","SJAG_04614","SJAG_03206"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[81270,112909,97711],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070692"},{"annotations":[111019,110862],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070691"},{"annotations":[110967,77940,116846,72120,80507,76152,71894,94063],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005675"},{"annotations":[67348,77996,61406],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070985"}]},"cv_name":"cellular_component","definition":"A protein complex that phosphorylates amino acid residues of RNA polymerase II C-terminal domain repeats; phosphorylation occurs mainly on Ser2 and Ser5.","definition_xrefs":["PMID:15047695","PMID:16721054","PMID:17079683"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"is_a","term_name":"serine/threonine protein kinase complex","termid":"GO:1902554"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00150":null,"SJAG_00512":null,"SJAG_00758":null,"SJAG_00901":null,"SJAG_00995":null,"SJAG_01149":null,"SJAG_01207":null,"SJAG_01213":null,"SJAG_02057":null,"SJAG_03061":null,"SJAG_03206":null,"SJAG_03618":null,"SJAG_03967":null,"SJAG_04368":null,"SJAG_04420":null,"SJAG_04614":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"carboxy-terminal domain protein kinase complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"CTDK complex","type":"exact"}],"termid":"GO:0032806","terms_by_termid":{"GO:0005675":null,"GO:0070691":null,"GO:0070692":null,"GO:0070985":null}}


id: PATO:0000932
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000932 far red light sensitivity (obsolete PATO:0000932)","termid":"PATO:0000932"}


id: PBO:0089626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger, CCCH-type","termid":"PBO:0089626"}


id: PBO:0002595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucan glucosidase Exg2, unknown specificity","termid":"PBO:0002595"}


id: PBO:0050243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 21","termid":"PBO:0050243"}


id: SO:0002092
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A UTR variant of exonic sequence of the 5' UTR.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5_prime_UTR_variant","termid":"SO:0001623"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5_prime_UTR_exon_variant","synonyms":[{"name":"5 prime UTR exon variant","type":"exact"}],"termid":"SO:0002092"}


id: GO:0046597
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a host inhibits or disrupts the entry of a symbiont into a host cell.","definition_xrefs":["PMID:23544079"],"direct_ancestors":[{"relation_name":"is_a","term_name":"innate immune response","termid":"GO:0045087"},{"relation_name":"is_a","term_name":"host-mediated perturbation of symbiont process","termid":"GO:0051851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"host-mediated suppression of symbiont invasion","synonyms":[{"name":"blocking of symbiont entry into host cell","type":"exact"},{"name":"negative regulation of symbiont entry into host cell","type":"related"},{"name":"negative regulation of viral entry into host cell","type":"narrow"},{"name":"negative regulation of viral penetration into host cell","type":"exact"},{"name":"prevention of symbiont entry into host cell","type":"exact"}],"termid":"GO:0046597"}


id: PBO:0083014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAH-box RNA helicase; involved in the second catalytic step of splicing and in exon ligation; exhibits ATP-dependent RNA unwinding activity; mediates the release of Yju2p and Cwc25p in the second step; in the absence of ATP, stabilizes the binding of Cwc25p to the spliceosome in the first catalytic step; missense mutation in human ortholog DHX38 associated with early-onset retinitis pigmentosa","termid":"PBO:0083014"}


id: PBO:0045920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EF-hand calcium binding domain 14","termid":"PBO:0045920"}


id: GO:0021961
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the midbrain towards target cells in the diencephalon.","definition_xrefs":["GO_REF:0000021","GOC:dgh","GOC:dph","GOC:cls","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system projection neuron axonogenesis","termid":"GO:0021952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"posterior commissure morphogenesis","termid":"GO:0021961"}


id: MONDO:0019285
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A nail anomaly that is part of a larger syndrome.","definition_xrefs":["MONDO:patterns/syndromic"],"gene_count":0,"genotype_count":0,"name":"obsolete syndromic nail anomaly (obsolete MONDO:0019285)","secondary_identifiers":["Orphanet:79370"],"synonyms":[{"name":"syndrome associated with nail anomaly","type":"exact"},{"name":"syndromic nail anomaly","type":"exact"}],"termid":"MONDO:0019285","xrefs":{"Monarch":{"xref_id":"0019285"}}}


id: PBO:0057847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3159","termid":"PBO:0057847"}


id: GO:0034217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of ascospore wall chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues, found in the walls of ascospores.","definition_xrefs":["GOC:mah","GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete ascospore wall chitin biosynthetic process (obsolete GO:0034217)","synonyms":[{"name":"ascospore wall chitin anabolism","type":"exact"},{"name":"ascospore wall chitin biosynthesis","type":"exact"},{"name":"ascospore wall chitin formation","type":"exact"},{"name":"ascospore wall chitin synthesis","type":"exact"}],"termid":"GO:0034217"}


id: GO:0008614
data:
  {"annotated_genes":["SJAG_00691","SJAG_00283","SJAG_01881"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80166],"is_not":false,"summary":null,"term":"GO:0008614"},{"annotations":[77369,65180],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008615"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin B6 metabolic process","termid":"GO:0042816"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00283":null,"SJAG_00691":null,"SJAG_01881":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006766","GO:0044281"],"is_obsolete":false,"name":"pyridoxine metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"secondary_identifiers":["GO:0006773"],"synonyms":[{"name":"pyridoxine metabolism","type":"exact"}],"termid":"GO:0008614","terms_by_termid":{"GO:0008614":null,"GO:0008615":null}}


id: GO:0102491
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: dGTP + 2 H2O = dGMP + 2 hydrogenphosphate + 2 H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete dGTP phosphohydrolase activity (obsolete GO:0102491)","termid":"GO:0102491"}


id: PBO:0081507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 414","termid":"PBO:0081507"}


id: MONDO:0007260
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Car factor deficiency","secondary_identifiers":["MESH:C566176","OMIM:114650","UMLS:C1861898","MEDGEN:354615"],"synonyms":[{"name":"Car factor deficiency","type":"exact"}],"termid":"MONDO:0007260","xrefs":{"Monarch":{"xref_id":"0007260"}}}


id: MONDO:0000521
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from the major or minor salivary glands. Representative examples include carcinoma ex pleomorphic adenoma, adenocarcinoma, adenoid cystic carcinoma, and mucoepidermoid carcinoma.","definition_xrefs":["NCIT:C9272"],"direct_ancestors":[{"relation_name":"is_a","term_name":"salivary gland cancer","termid":"MONDO:0004669"},{"relation_name":"is_a","term_name":"oral cavity carcinoma","termid":"MONDO:0044925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"salivary gland carcinoma","secondary_identifiers":["ONCOTREE:SACA","MEDGEN:215302","UMLS:C0948750","DOID:0050904","NANDO:2200076"],"synonyms":[{"name":"carcinoma of saliva-secreting gland","type":"exact"},{"name":"carcinoma of salivary gland","type":"exact"},{"name":"carcinoma of the salivary gland","type":"exact"},{"name":"saliva-secreting gland carcinoma","type":"exact"},{"name":"salivary carcinoma","type":"related"},{"name":"salivary gland cancer","type":"broad"},{"name":"salivary gland carcinoma","type":"exact"}],"termid":"MONDO:0000521","xrefs":{"Monarch":{"xref_id":"0000521"}}}


id: PBO:0044293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CXXC finger protein 1 pseudogene 1","termid":"PBO:0044293"}


id: PBO:0074916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 87","termid":"PBO:0074916"}


id: MONDO:0958334
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"heritable pulmonary arterial hypertension","termid":"MONDO:0017148"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pulmonary hypertension, primary, 6","secondary_identifiers":["OMIM:620777","UMLS:C5935600","MEDGEN:1863339"],"termid":"MONDO:0958334","xrefs":{"Monarch":{"xref_id":"0958334"}}}


id: MONDO:0009273
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any complete hydatidiform mole in which the cause of the disease is a mutation in the NLRP7 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complete hydatidiform mole","termid":"MONDO:0016785"},{"relation_name":"is_a","term_name":"gestational trophoblastic neoplasm","termid":"MONDO:0018944"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydatidiform mole, recurrent, 1","secondary_identifiers":["OMIM:231090","UMLS:C3463897","GARD:18365","MEDGEN:483038"],"synonyms":[{"name":"HYDM1","type":"related"},{"name":"NLRP7 complete hydatidiform mole","type":"exact"},{"name":"complete hydatidiform mole caused by mutation in NLRP7","type":"exact"},{"name":"gestational trophoblastic disease","type":"related"},{"name":"hydatidiform MOLE, recurrent, 1","type":"related"},{"name":"hydatidiform Mole, complete","type":"related"},{"name":"hydatidiform Mole, recurrent, type 1","type":"exact"},{"name":"hydatidiform mole","type":"related"},{"name":"hydatidiform mole, recurrent, 1","type":"exact"}],"termid":"MONDO:0009273","xrefs":{"Monarch":{"xref_id":"0009273"}}}


id: GO:0009252
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls and consisting of long glycan strands of alternating residues of beta-(1,4) linked N-acetylglucosamine and N-acetylmuramic acid, cross-linked by short peptides.","definition_xrefs":["PMID:18266853"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidoglycan metabolic process","termid":"GO:0000270"},{"relation_name":"is_a","term_name":"glycosaminoglycan biosynthetic process","termid":"GO:0006024"},{"relation_name":"is_a","term_name":"cell wall macromolecule biosynthetic process","termid":"GO:0044038"},{"relation_name":"part_of","term_name":"peptidoglycan-based cell wall biogenesis","termid":"GO:0009273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0044085","GO:0071554","GO:0008150"],"is_obsolete":false,"name":"peptidoglycan biosynthetic process","secondary_identifiers":["GO:0009285"],"synonyms":[{"name":"murein biosynthesis","type":"exact"},{"name":"murein biosynthetic process","type":"exact"},{"name":"peptidoglycan anabolism","type":"exact"},{"name":"peptidoglycan biosynthesis","type":"exact"},{"name":"peptidoglycan formation","type":"exact"},{"name":"peptidoglycan synthesis","type":"exact"}],"termid":"GO:0009252"}


id: PBO:0027981
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cut_during_cellular_response_to_thiabendazole","termid":"PBO:0027981"}


id: PBO:0080406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting 36 homolog","termid":"PBO:0080406"}


id: PBO:0063540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"platelet endothelial aggregation receptor 1","termid":"PBO:0063540"}


id: PBO:0067149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 199, pseudogene","termid":"PBO:0067149"}


id: GO:1903494
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dehydroepiandrosterone stimulus.","definition_xrefs":["GOC:TermGenie","PMID:3585228","GO_REF:0000071","GOC:mr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to lipid","termid":"GO:0033993"},{"relation_name":"is_a","term_name":"response to alcohol","termid":"GO:0097305"},{"relation_name":"is_a","term_name":"response to ketone","termid":"GO:1901654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to dehydroepiandrosterone","termid":"GO:1903494"}


id: MONDO:0007623
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flushing of ears and somnolence","secondary_identifiers":["UMLS:C1851055","OMIM:136200","MEDGEN:340685"],"synonyms":[{"name":"flushing of ears and somnolence","type":"exact"}],"termid":"MONDO:0007623","xrefs":{"Monarch":{"xref_id":"0007623"}}}


id: GO:0038109
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of stem cell factor to the tyrosine kinase receptor KIT on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription. Stem cell factor (KIT ligand) binding to the receptor Kit mediates receptor dimerization, activation of its intrinsic tyrosine kinase activity and autophosphorylation. The activated receptor then phosphorylates various substrates, thereby activating distinct signaling cascades within the cell that trigger a change in state or activity of the cell.","definition_xrefs":["GOC:signaling","GOC:nhn","PMID:16129412"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor protein tyrosine kinase signaling pathway","termid":"GO:0007169"},{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"},{"relation_name":"part_of","term_name":"cellular response to stem cell factor stimulus","termid":"GO:0036216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"Kit signaling pathway","synonyms":[{"name":"Kit signalling pathway","type":"exact"},{"name":"SCF signaling pathway","type":"exact"},{"name":"stem cell factor receptor signaling pathway","type":"exact"},{"name":"stem cell factor signaling pathway","type":"exact"}],"termid":"GO:0038109"}


id: PBO:0073423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor 1","termid":"PBO:0073423"}


id: MONDO:0000933
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant neoplasm that affects the subglottic area of the larynx.","definition_xrefs":["NCIT:C4426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laryngeal neoplasm","termid":"MONDO:0021071"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"subglottis neoplasm","secondary_identifiers":["DOID:10069","MEDGEN:87513","UMLS:C0345746","SCTID:126696001"],"synonyms":[{"name":"neoplasm of subglottis","type":"exact"},{"name":"neoplasm of the subglottis","type":"exact"},{"name":"subglottic neoplasm","type":"exact"},{"name":"subglottic tumor","type":"exact"},{"name":"subglottic tumour","type":"exact"},{"name":"subglottis neoplasm","type":"exact"},{"name":"subglottis neoplasm (disease)","type":"exact"},{"name":"subglottis tumor","type":"exact"},{"name":"subglottis tumour","type":"exact"},{"name":"tumor of subglottis","type":"exact"},{"name":"tumor of the subglottis","type":"exact"},{"name":"tumour of subglottis","type":"exact"},{"name":"tumour of the subglottis","type":"exact"}],"termid":"MONDO:0000933","xrefs":{"Monarch":{"xref_id":"0000933"}}}


id: PBO:0075266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 18 pseudogene 19","termid":"PBO:0075266"}


id: PBO:0110363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epithelial membrane protein 3 (MAM blood group)","termid":"PBO:0110363"}


id: PBO:0004117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase III complex subunit Rpc25","termid":"PBO:0004117"}


id: PBO:0052867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 5-10","termid":"PBO:0052867"}


id: PBO:0018033
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear PassenGer=","termid":"PBO:0018033"}


id: GO:0006182
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide biosynthetic process","termid":"GO:0009152"},{"relation_name":"is_a","term_name":"cyclic nucleotide biosynthetic process","termid":"GO:0009190"},{"relation_name":"is_a","term_name":"cGMP metabolic process","termid":"GO:0046068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"cGMP biosynthetic process","synonyms":[{"name":"cGMP anabolism","type":"exact"},{"name":"cGMP biosynthesis","type":"exact"},{"name":"cGMP formation","type":"exact"},{"name":"cGMP synthesis","type":"exact"}],"termid":"GO:0006182"}


id: PATO:0000235
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000235 odor_acuity (obsolete PATO:0000235)","termid":"PATO:0000235"}


id: PBO:0043438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondromodulin","termid":"PBO:0043438"}


id: PBO:0117090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PREP antisense RNA 1","termid":"PBO:0117090"}


id: MONDO:0002326
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"substance-induced psychosis","termid":"MONDO:0004630"},{"relation_name":"is_a","term_name":"mental disorder","termid":"MONDO:0005084"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alcohol-induced mental disorder","secondary_identifiers":["UMLS:C5200920","DOID:251","MEDGEN:1705315","ICD9:291.8","ICD9:291.89"],"termid":"MONDO:0002326","xrefs":{"Monarch":{"xref_id":"0002326"}}}


id: PBO:0077122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIMP metallopeptidase inhibitor 1","termid":"PBO:0077122"}


id: PBO:0017505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stretch-activated calcium ion channel Yam8","termid":"PBO:0017505"}


id: PBO:0028256
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_ornithine_carbamoyltransferase_activity","termid":"PBO:0028256"}


id: PBO:0052876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 8-1","termid":"PBO:0052876"}


id: GO:0001778
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The resealing of a cell plasma membrane after cellular wounding due to, for instance, mechanical stress.","definition_xrefs":["GOC:add","PMID:12925704"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane organization","termid":"GO:0007009"},{"relation_name":"part_of","term_name":"wound healing","termid":"GO:0042060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"plasma membrane repair","termid":"GO:0001778"}


id: GO:0047653
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-(+)-allantoin = (R)-(-)-allantoin.","definition_xrefs":["EC:5.1.99.3","RHEA:10804"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity","termid":"GO:0016854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824"],"is_obsolete":false,"name":"allantoin racemase activity","secondary_identifiers":["MetaCyc:ALLANTOIN-RACEMASE-RXN","KEGG_REACTION:R03925"],"termid":"GO:0047653"}


id: PBO:0041462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 10 open reading frame 95","termid":"PBO:0041462"}


id: PBO:0045579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxyuridine triphosphatase pseudogene 1","termid":"PBO:0045579"}


id: PBO:0046534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group 3 member 1, envelope","termid":"PBO:0046534"}


id: PBO:0057455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 574","termid":"PBO:0057455"}


id: PBO:0084439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Maltase (alpha-D-glucosidase); encoded within the complex locus MAL4","termid":"PBO:0084439"}


id: SO:0001889
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A feature amplification of a region containing a transcript.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_amplification","termid":"SO:0001880"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcript_amplification","secondary_identifiers":["http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"VEP:transcript_amplification","type":"exact"},{"name":"transcript amplification","type":"exact"}],"termid":"SO:0001889"}


id: PBO:0079844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unc-13 homolog C","termid":"PBO:0079844"}


id: PBO:0091863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-B homolog Cbh2, domesticated transposable element","termid":"PBO:0091863"}


id: PBO:0065286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich transmembrane protein 1B","termid":"PBO:0065286"}


id: PBO:0027323
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_mtDNA_level","termid":"PBO:0027323"}


id: PBO:0061507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurexin 2","termid":"PBO:0061507"}


id: PBO:0042938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondroadherin like","termid":"PBO:0042938"}


id: GO:0071981
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The dormancy process that results in exit from diapause. Diapause is a neurohormonally mediated, dynamic state of low metabolic activity. Associated characteristics of this form of dormancy include reduced morphogenesis, increased resistance to environmental extremes, and altered or reduced behavioral activity. Full expression develops in a species-specific manner, usually in response to a number of environmental stimuli that precede unfavorable conditions. Once diapause has begun, metabolic activity is suppressed even if conditions favorable for development prevail. Once initiated, only certain stimuli are capable of releasing the organism from this state, and this characteristic is essential in distinguishing diapause from hibernation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dormancy process","termid":"GO:0022611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"exit from diapause","termid":"GO:0071981"}


id: PBO:0058977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mutL homolog 1","termid":"PBO:0058977"}


id: MONDO:0018140
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete burning mouth syndrome (obsolete MONDO:0018140)","termid":"MONDO:0018140","xrefs":{"Monarch":{"xref_id":"0018140"}}}


id: PATO:0002030
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A molecular quality that inheres in a molecular entity by virtue of whether the bearer exhibits the ability of a probe to react precisely with a specific target molecule.","definition_xrefs":["PATOC:mc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular quality","termid":"PATO:0002182"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"specificity to","termid":"PATO:0002030"}


id: GO:0035294
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Allocation of embryonic cells to the wing disc founder populations, groups of cells that are committed to contribute to the formation of a wing imaginal disc.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"determination of imaginal disc primordium","termid":"GO:0007445"},{"relation_name":"is_a","term_name":"wing disc development","termid":"GO:0035220"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"determination of wing disc primordium","termid":"GO:0035294"}


id: PBO:0083445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene ALA1/YOR335C","termid":"PBO:0083445"}


id: PBO:0076954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TGFB2 overlapping transcript 1","termid":"PBO:0076954"}


id: _global:has_ratio_quality
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_ratio_quality","termid":"_global:has_ratio_quality"}


id: GO:0043703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a photoreceptor cell regardless of its environment; upon determination, the cell fate cannot be reversed.","definition_xrefs":["GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron fate determination","termid":"GO:0048664"},{"relation_name":"part_of","term_name":"photoreceptor cell fate commitment","termid":"GO:0046552"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"photoreceptor cell fate determination","termid":"GO:0043703"}


id: PBO:0039803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor 1 pseudogene 1","termid":"PBO:0039803"}


id: PBO:0045546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 1","termid":"PBO:0045546"}


id: MONDO:1012132
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin G deficiency, non-human animal","termid":"MONDO:1011727"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin G deficiency, dog","secondary_identifiers":["OMIA:000554-9615"],"termid":"MONDO:1012132","xrefs":{"Monarch":{"xref_id":"1012132"}}}


id: PBO:0088336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER zinc exporter, ZIP family Zip3","termid":"PBO:0088336"}


id: MONDO:0700230
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any foveal hypoplasia with or without albinism caused by a variant in the GPR143 gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"foveal hypoplasia","termid":"MONDO:0044203"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPR143-related foveal hypoplasia","synonyms":[{"name":"GPR143-related foveal hypoplasia with or without albinism","type":"exact"}],"termid":"MONDO:0700230","xrefs":{"Monarch":{"xref_id":"0700230"}}}


id: PBO:0066488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ret finger protein like 4A","termid":"PBO:0066488"}


id: PBO:0059495
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myostatin","termid":"PBO:0059495"}


id: PBO:0046820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FA core complex associated protein 24","termid":"PBO:0046820"}


id: MONDO:0014267
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Severe combined immunodeficiency due to IKK2 deficiency is a rare, genetic form of primary immunodeficiency characterized by life-threatening bacterial, fungal and viral infections with the onset in infancy, and failure to thrive. Typically, hypogammaglobulinemia or agammaglobulinemia and normal levels of T and B cells are present.","definition_xrefs":["Orphanet:397787"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T+ B+ severe combined immunodeficiency","termid":"MONDO:0044201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"severe combined immunodeficiency due to IKK2 deficiency","secondary_identifiers":["MEDGEN:1648569","OMIM:615592","UMLS:C4747743","GARD:17641","DOID:0111959"],"synonyms":[{"name":"IMD15","type":"related"},{"name":"SCID due to IKK2 deficiency","type":"exact"},{"name":"immunodeficiency 15","type":"related"},{"name":"immunodeficiency 15B","type":"exact"},{"name":"immunodeficiency type 15","type":"exact"}],"termid":"MONDO:0014267","xrefs":{"Monarch":{"xref_id":"0014267"}}}


id: GO:0071903
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process of protein N-linked glycosylation via asparagine in which N-acetylglucosamine is added to the N4 of asparagine, forming an (S)-2-amino-4-(2-acetamido-2-deoxy-beta-D-glucopyranosyl)amino-4-oxobutanoic acid residue.","definition_xrefs":["GOC:pr","RESID:AA0151"],"gene_count":0,"genotype_count":0,"name":"obsolete protein N-linked N-acetylglucosaminylation via asparagine (obsolete GO:0071903)","synonyms":[{"name":"protein amino acid N-linked N-acetylglucosaminylation via asparagine","type":"exact"}],"termid":"GO:0071903"}


id: PR:Q10170
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC26A3.17c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10170"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein arginine N-methyltransferase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC26A3.17c","synonyms":[{"name":"Spom972h-SPAC26A3.17c","type":"exact"},{"name":"protein-arginine N5-methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"type IV PRMT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"type IV protein arginine N-methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10170"}


id: PBO:0005584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing associated factor Saf1","termid":"PBO:0005584"}


id: GO:0061319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a nephrocyte. A nephrocyte is an insect renal cell that filters hemolymph. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.","definition_xrefs":["CL:0002520","GOC:dph","PMID:19783135","GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal filtration cell differentiation","termid":"GO:0061318"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nephrocyte differentiation","termid":"GO:0061319"}


id: GO:0110046
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A signal transduction process that contributes to cell cycle switching, mitotic to meiotic cell cycle.","definition_xrefs":["PMID:17674143","GOC:al"],"gene_count":0,"genotype_count":0,"name":"obsolete signal transduction involved in cell cycle switching, mitotic to meiotic cell cycle (obsolete GO:0110046)","termid":"GO:0110046"}


id: PBO:0059807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 33","termid":"PBO:0059807"}


id: MONDO:0024664
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hypertensive disorder that develops during pregnancy.","definition_xrefs":["NCIT:C9243"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypertensive disorder","termid":"MONDO:0005044"},{"relation_name":"is_a","term_name":"pregnancy disorder","termid":"MONDO:0024575"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypertension, pregnancy-induced","secondary_identifiers":["MEDGEN:852894","SCTID:48194001","MESH:D046110","UMLS:C0852036"],"synonyms":[{"name":"gestational hypertension","type":"related"},{"name":"hypertension associated disorders of pregnancy","type":"exact"},{"name":"hypertension complicating pregnancy","type":"related"},{"name":"hypertension induced by pregnancy","type":"related"},{"name":"hypertension, gestational","type":"related"},{"name":"hypertension, pregnancy induced","type":"related"},{"name":"hypertension, pregnancy transient","type":"related"},{"name":"hypertension-associated pregnancy disorder","type":"exact"},{"name":"hypertensions, pregnancy induced","type":"related"},{"name":"induced Hypertensions, pregnancy","type":"related"},{"name":"induced hypertension, pregnancy","type":"related"},{"name":"pregnancy induced hypertension","type":"related"},{"name":"pregnancy transient hypertension","type":"related"},{"name":"pregnancy-induced hypertension","type":"exact"},{"name":"transient hypertension, pregnancy","type":"related"}],"termid":"MONDO:0024664","xrefs":{"Monarch":{"xref_id":"0024664"}}}


id: GO:1903105
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of insulin receptor signaling pathway involved in determination of adult lifespan.","definition_xrefs":["PMID:19853560","GOC:kmv","GO_REF:0000058","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of insulin receptor signaling pathway involved in determination of adult lifespan (obsolete GO:1903105)","synonyms":[{"name":"down regulation of daf-2 receptor signaling pathway of determination of adult lifespan","type":"narrow"},{"name":"down regulation of insulin receptor signaling pathway involved in determination of adult lifespan","type":"exact"},{"name":"down regulation of insulin receptor signaling pathway of determination of adult lifespan","type":"exact"},{"name":"down regulation of insulin receptor signalling pathway of determination of adult lifespan","type":"exact"},{"name":"down-regulation of daf-2 receptor signaling pathway of determination of adult lifespan","type":"narrow"},{"name":"down-regulation of insulin receptor signaling pathway involved in determination of adult lifespan","type":"exact"},{"name":"down-regulation of insulin receptor signaling pathway of determination of adult lifespan","type":"exact"},{"name":"down-regulation of insulin receptor signalling pathway of determination of adult lifespan","type":"exact"},{"name":"downregulation of daf-2 receptor signaling pathway of determination of adult lifespan","type":"narrow"},{"name":"downregulation of insulin receptor signaling pathway involved in determination of adult lifespan","type":"exact"},{"name":"downregulation of insulin receptor signaling pathway of determination of adult lifespan","type":"exact"},{"name":"downregulation of insulin receptor signalling pathway of determination of adult lifespan","type":"exact"},{"name":"inhibition of daf-2 receptor signaling pathway of determination of adult lifespan","type":"narrow"},{"name":"inhibition of insulin receptor signaling pathway involved in determination of adult lifespan","type":"narrow"},{"name":"inhibition of insulin receptor signaling pathway of determination of adult lifespan","type":"narrow"},{"name":"inhibition of insulin receptor signalling pathway of determination of adult lifespan","type":"narrow"},{"name":"negative regulation of daf-2 receptor signaling pathway of determination of adult lifespan","type":"narrow"},{"name":"negative regulation of insulin receptor signaling pathway of determination of adult lifespan","type":"exact"},{"name":"negative regulation of insulin receptor signalling pathway of determination of adult lifespan","type":"exact"}],"termid":"GO:1903105"}


id: GO:0031052
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Regulated cleavage of the developing macronuclear genome at a limited number of chromosome breakage sites (CBS). The macronuclear destined segment (MDS) sequence adjacent to the CBS (or separated from it by a BES) receives a macronuclear telomere following chromosome breakage.","definition_xrefs":["GOC:ns","PMID:15956677","PMID:25303953","PMID:32165395"],"direct_ancestors":[{"relation_name":"is_a","term_name":"programmed DNA elimination","termid":"GO:0031049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"programmed DNA elimination by chromosome breakage","synonyms":[{"name":"chromosome breakage","type":"related"}],"termid":"GO:0031052"}


id: PBO:0067843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 145","termid":"PBO:0067843"}


id: MONDO:0957253
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital diarrhea","termid":"MONDO:0000824"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"diarrhea 13","secondary_identifiers":["MEDGEN:1841113","OMIM:620357","UMLS:C5830477"],"termid":"MONDO:0957253","xrefs":{"Monarch":{"xref_id":"0957253"}}}


id: GO:0140505
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of microlipophagy, the microautophagy-mediated direct internalization of lipid droplets into a lysosome-like vacuole during nutrient depletion.","definition_xrefs":["PMID:28394250","PMID:29601311"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of autophagy","termid":"GO:0010506"},{"relation_name":"regulates","term_name":"microlipophagy","termid":"GO:0140504"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006914","GO:0008150"],"is_obsolete":false,"name":"regulation of microlipophagy","termid":"GO:0140505"}


id: GO:0072302
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of metanephric glomerular mesangial cell proliferation.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of glomerular mesangial cell proliferation","termid":"GO:0072125"},{"relation_name":"is_a","term_name":"regulation of metanephric glomerular mesangial cell proliferation","termid":"GO:0072301"},{"relation_name":"negatively_regulates","term_name":"metanephric glomerular mesangial cell proliferation involved in metanephros development","termid":"GO:0072262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of metanephric glomerular mesangial cell proliferation","termid":"GO:0072302"}


id: FYPO:0007041
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of alkaline phosphatase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased phosphatase activity","termid":"FYPO:0004415"},{"relation_name":"is_a","term_name":"abnormal alkaline phosphatase activity","termid":"FYPO:0007040"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0001985","FYPO:0000661","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"increased alkaline phosphatase activity","termid":"FYPO:0007041"}


id: PR:Q09116
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- spn2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09116"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin homolog spn2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC821.06","synonyms":[{"name":"Spom972h-spn2","type":"exact"}],"termid":"PR:Q09116"}


id: GO:0010009
data:
  {"annotated_genes":["SJAG_02587"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[92456],"is_not":false,"summary":null,"term":"GO:0010009"}]},"cv_name":"cellular_component","definition":"The side (leaflet) of the endosome membrane that faces the cytoplasm.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic side of membrane","termid":"GO:0098562"},{"relation_name":"part_of","term_name":"endosome membrane","termid":"GO:0010008"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02587":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005768","GO:0031410","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"cytoplasmic side of endosome membrane","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"external leaflet of endosome membrane","type":"exact"},{"name":"external side of endosome membrane","type":"exact"}],"termid":"GO:0010009","terms_by_termid":{"GO:0010009":null}}


id: PBO:0077166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TLE family member 7","termid":"PBO:0077166"}


id: PBO:0076252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptic vesicle glycoprotein 2A","termid":"PBO:0076252"}


id: PBO:0065379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pregnancy specific beta-1-glycoprotein 7","termid":"PBO:0065379"}


id: PBO:0031259
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_meiotic_telomere_clustering","termid":"PBO:0031259"}


id: MOD:00395
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks two residues by formation of a thioester bond between a cysteine thiol and either an alpha-carbonyl, as in S-(L-methionyl-L-cysteine), or a sidechain carbonyl, as in S-(L-isoglutamyl)-L-cysteine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues","termid":"MOD:00033"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"thioester crosslinked residues","termid":"MOD:00395"}


id: PBO:0058861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 8485","termid":"PBO:0058861"}


id: PBO:0000220
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Septum Initiation Defective","termid":"PBO:0000220"}


id: PBO:0082513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of the Hat1p-Hat2p histone acetyltransferase complex; uses the cofactor acetyl coenzyme A to acetylate free nuclear and cytoplasmic histone H4; involved in telomeric silencing and DNA double-strand break repair","termid":"PBO:0082513"}


id: PBO:0072357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 43","termid":"PBO:0072357"}


id: PBO:0039375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angiomotin","termid":"PBO:0039375"}


id: PBO:0084816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein of unknown function; predicted to have thiol-disulfide oxidoreductase active site","termid":"PBO:0084816"}


id: PBO:0084725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane protein; required for proteolytic processing of Cox2p and its assembly into cytochrome c oxidase","termid":"PBO:0084725"}


id: GO:0000298
data:
  {"annotated_genes":["SJAG_00570","SJAG_04870","SJAG_00132"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72338,81057,117875],"is_not":false,"summary":null,"term":"GO:0000298"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: polyphosphate + n H2O = (n+1) oligophosphate. The product contains 4 or 5 phosphate residues.","definition_xrefs":["EC:3.6.1.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00132":null,"SJAG_00570":null,"SJAG_04870":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"endopolyphosphatase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:ENDOPOLYPHOSPHATASE-RXN","RHEA:22452"],"synonyms":[{"name":"metaphosphatase activity","type":"broad"},{"name":"polymetaphosphatase activity","type":"related"},{"name":"polyphosphatase activity","type":"broad"},{"name":"polyphosphate depolymerase activity","type":"broad"},{"name":"polyphosphate polyphosphohydrolase activity","type":"related"}],"termid":"GO:0000298","terms_by_termid":{"GO:0000298":null}}


id: PBO:0039741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein L3","termid":"PBO:0039741"}


id: PBO:0062173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily K member 16 pseudogene","termid":"PBO:0062173"}


id: MONDO:0011476
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Immunodeficiency by defective expression of HLA class 1 is a very rare, primary, genetic, immunodeficiency disorder characterized by partial or complete absence of human leukocyte antigen class I expression resulting in a non-specific clinical picture of impaired immune response and susceptibility to infections.","definition_xrefs":["Orphanet:34592"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"severe combined immunodeficiency","termid":"MONDO:0015974"},{"relation_name":"excluded_subClassOf","term_name":"non-SCID combined immunodeficiency","termid":"MONDO:0018814"},{"relation_name":"is_a","term_name":"combined immunodeficiency","termid":"MONDO:0015131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"MHC class I deficiency","secondary_identifiers":["UMLS:C1858266","MEDGEN:346868","DOID:0060009","GARD:8427","icd11.foundation:489749747","NANDO:2200701","OMIMPS:604571","SCTID:725136003","NANDO:1200328"],"synonyms":[{"name":"BARE lymphocyte syndrome, type I","type":"related"},{"name":"BLS type 1","type":"related"},{"name":"BLS, type I","type":"exact"},{"name":"BLSI","type":"exact"},{"name":"Bare lymphocyte syndrome type 1","type":"exact"},{"name":"Bare lymphocyte syndrome, type 1","type":"related"},{"name":"Bls, type 1","type":"related"},{"name":"HLA CLASS I deficiency","type":"exact"},{"name":"HLA Class 1 deficiency","type":"related"},{"name":"bare lymphocyte syndrome type I","type":"exact"},{"name":"immunodeficiency by defective expression of HLA class 1","type":"exact"},{"name":"immunodeficiency by defective expression of HLA class type 1","type":"exact"}],"termid":"MONDO:0011476","xrefs":{"Monarch":{"xref_id":"0011476"}}}


id: MONDO:0001285
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"endometriosis","termid":"MONDO:0005133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endometriosis of pelvic peritoneum","secondary_identifiers":["MEDGEN:510249","SCTID:198251001","UMLS:C0156345","icd11.foundation:1015401835","ICD9:617.3","DOID:11429","ICD10CM:N80.3"],"termid":"MONDO:0001285","xrefs":{"Monarch":{"xref_id":"0001285"}}}


id: PBO:0000496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bromodomain","termid":"PBO:0000496"}


id: PBO:0027387
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_in_stationary_phase","termid":"PBO:0027387"}


id: PBO:0063655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase 1 pseudogene 12","termid":"PBO:0063655"}


id: GO:0033905
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the random hydrolysis of (1->3)-beta-D-glycosidic linkages in (1->3)-beta-D-xylans.","definition_xrefs":["EC:3.2.1.32"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xylanase activity","termid":"GO:0097599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003824","GO:0016798","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"xylan endo-1,3-beta-xylosidase activity","secondary_identifiers":["MetaCyc:3.2.1.32-RXN"],"synonyms":[{"name":"1,3-beta-D-xylan xylanohydrolase activity","type":"related"},{"name":"1,3-beta-xylanase activity","type":"related"},{"name":"1,3-xylanase activity","type":"related"},{"name":"beta-1,3-xylanase activity","type":"related"},{"name":"endo-1,3-beta-xylanase activity","type":"related"},{"name":"endo-1,3-xylanase activity","type":"related"},{"name":"endo-beta-1,3-xylanase activity","type":"related"},{"name":"xylanase activity","type":"broad"}],"termid":"GO:0033905"}


id: PR:000050595
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A microtubule protein alp7 (Schizosaccharomyces pombe) that has been phosphorylated at positions equivalent to Ser-50, Ser-51, Thr-100, Thr-116, and Thr-131 of the amino acid sequence represented by UniProtKB:Q9URY2. Example: UniProtKB:Q9URY2, Ser-50/Ser-51, MOD:00046|Thr-100/Thr-116/Thr-131, MOD:00047.","definition_xrefs":["PRO:DAN","PomBase:MLR","PMID:24790093"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule protein alp7 (Schizosaccharomyces pombe)","termid":"PR:000050514"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alp7/Phos:(S50,S51,T100,T116,T131)","pombase_gene_id":"SPAC890.02c","synonyms":[{"name":"PomBase_original_PRO_term_name: microtubule protein alp7 phosphorylated 2 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-alp7/Phos:2","type":"exact"},{"name":"UniProtKB:Q9URY2, Ser-50/Ser-51, MOD:00046|Thr-100/Thr-116/Thr-131, MOD:00047","type":"narrow"},{"name":"alp7/Phos:(S50,S51,T100,T116,T131)","type":"exact"}],"termid":"PR:000050595"}


id: PBO:0084748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial malate dehydrogenase; catalyzes interconversion of malate and oxaloacetate; involved in the tricarboxylic acid (TCA) cycle; phosphorylated; mutation in human homolog MDH2 causes early-onset severe encephalopathy","termid":"PBO:0084748"}


id: GO:0034107
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of erythrocyte clearance.","definition_xrefs":["GOC:add","PMID:12905029","PMID:14754397"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune system process","termid":"GO:0002683"},{"relation_name":"is_a","term_name":"negative regulation of tissue remodeling","termid":"GO:0034104"},{"relation_name":"is_a","term_name":"regulation of erythrocyte clearance","termid":"GO:0034106"},{"relation_name":"negatively_regulates","term_name":"erythrocyte clearance","termid":"GO:0034102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of erythrocyte clearance","synonyms":[{"name":"negative regulation of RBC clearance","type":"exact"},{"name":"negative regulation of neocytolysis","type":"narrow"},{"name":"negative regulation of red blood cell clearance","type":"exact"}],"termid":"GO:0034107"}


id: GO:1902821
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 1-undecene.","definition_xrefs":["PMID:16013377","GOC:mengo_curators","GO_REF:0000068","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkene biosynthetic process","termid":"GO:0043450"},{"relation_name":"is_a","term_name":"1-undecene metabolic process","termid":"GO:1902820"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"1-undecene biosynthetic process","synonyms":[{"name":"1-undecene anabolism","type":"exact"},{"name":"1-undecene biosynthesis","type":"exact"},{"name":"1-undecene formation","type":"exact"},{"name":"1-undecene synthesis","type":"exact"}],"termid":"GO:1902821"}


id: PBO:0085549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; required for ribosome assembly and 20S pre-rRNA processing; mutations confer cryptopleurine resistance; homologous to mammalian ribosomal protein S14 and bacterial S11; RPS14B has a paralog, RPS14A, that arose from the whole genome duplication","termid":"PBO:0085549"}


id: PBO:0001637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PP2A","termid":"PBO:0001637"}


id: GO:0055035
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer membrane of any thylakoid within a plastid.","definition_xrefs":["GOC:rph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid membrane","termid":"GO:0042170"},{"relation_name":"is_a","term_name":"thylakoid membrane","termid":"GO:0042651"},{"relation_name":"part_of","term_name":"plastid thylakoid","termid":"GO:0031976"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"plastid thylakoid membrane","termid":"GO:0055035"}


id: PBO:0080046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 19","termid":"PBO:0080046"}


id: MONDO:1011184
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any vitamin D dependent rickets that occurs in cats due to a mutation in the CYP27B1 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"rickets, non-human animal","termid":"MONDO:1011456"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vitamin D dependent rickets type 1A, CYP27B1-related, domestic cat","secondary_identifiers":["OMIA:000837-9685"],"synonyms":[{"name":"vitamin D-deficiency rickets type IA, domestic cat","type":"related"}],"termid":"MONDO:1011184","xrefs":{"Monarch":{"xref_id":"1011184"}}}


id: FYPO:0006263
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 36 of histone H3 is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K36 methylation during vegetative growth","termid":"FYPO:0002918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0002274","FYPO:0000002","FYPO:0002494","FYPO:0005447"],"is_obsolete":false,"name":"increased histone H3-K36 trimethylation during vegetative growth","synonyms":[{"name":"increased histone H3 K36 trimethylation during vegetative growth","type":"exact"},{"name":"increased histone H3-K36 trimethylation during mitotic cell cycle","type":"related"},{"name":"increased histone H3K36me3 during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K36 trimethylation during vegetative growth","type":"exact"}],"termid":"FYPO:0006263"}


id: GO:0039638
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which a virion attaches to a host cell by binding to a lipopolysaccharide (LPS) on the host cell surface.","definition_xrefs":["PMID:12837775","GOC:bf","GOC:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"virion attachment to host cell","termid":"GO:0019062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lipopolysaccharide-mediated virion attachment to host cell","synonyms":[{"name":"LPS binding involved in viral attachment to host cell","type":"exact"},{"name":"lipopolysaccharide binding involved in viral attachment to host cell","type":"exact"},{"name":"virion attachment, binding to host lipopolysaccharide","type":"exact"}],"termid":"GO:0039638"}


id: PBO:0108955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBA5 pseudogene 1","termid":"PBO:0108955"}


id: MONDO:0009930
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Pulmonary arteriovenous malformation (PAVM) describes an anatomic communication between a pulmonary artery and a pulmonary vein leading to a right to left extracardiac shunt that can be asymptomatic or can lead to varying manifestations such as dyspnea, hemoptysis, and neurological symptoms.","definition_xrefs":["Orphanet:2038"],"gene_count":0,"genotype_count":0,"name":"obsolete pulmonary arteriovenous malformation (obsolete MONDO:0009930)","secondary_identifiers":["NANDO:2200295","OMIM:265140","MedDRA:10037332","NCIT:C99029","MESH:C562404","icd11.foundation:913404991","SCTID:303070000","HP:0006548"],"synonyms":[{"name":"PAVM","type":"exact"},{"name":"arteriovenous fistula of pulmonary vessels","type":"exact"},{"name":"pulmonar arteriovenous aneurysm","type":"related"},{"name":"pulmonary AV fistula","type":"exact"},{"name":"pulmonary arterio-veinous fistula","type":"related"},{"name":"pulmonary arteriovenous fistula","type":"exact"},{"name":"pulmonary arteriovenous fistulas","type":"related"},{"name":"pulmonary arteriovenous malformation","type":"exact"},{"name":"pulmonary arteriovenous malformation (disease)","type":"exact"}],"termid":"MONDO:0009930","xrefs":{"Monarch":{"xref_id":"0009930"}}}


id: PBO:0057216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR378D2 host gene","termid":"PBO:0057216"}


id: PBO:0059497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"misato family member 2, pseudogene","termid":"PBO:0059497"}


id: PBO:0082814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Conserved ER protein translocation channel; essential subunit of Sec61 complex (Sec61p, Sbh1p, and Sss1p); forms channel for SRP-dependent protein import; with Sec63 complex is required for SRP-independent protein translocation into the ER; involved in posttranslational soluble protein import into the ER, ERAD of soluble substrates, and misfolded soluble protein export from the ER","termid":"PBO:0082814"}


id: CHEBI:168396
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mycophenolic acid","termid":"CHEBI:168396"}


id: MONDO:0030998
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0000426"],"is_obsolete":false,"name":"hearing loss, autosomal dominant 80","secondary_identifiers":["MEDGEN:1779667","OMIM:619274","UMLS:C5543289","GARD:18158"],"synonyms":[{"name":"DFNA80","type":"narrow"},{"name":"deafness, autosomal dominant 80","type":"narrow"}],"termid":"MONDO:0030998","xrefs":{"Monarch":{"xref_id":"0030998"}}}


id: PBO:0040920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"base methyltransferase of 25S rRNA 2 homolog","termid":"PBO:0040920"}


id: GO:0060877
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pattern specification process that results in the subdivision of the otic epithelium in space to define an area or volume in which cells will differentiate to give rise to the semicircular canals.","definition_xrefs":["GOC:sdb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"},{"relation_name":"part_of","term_name":"semicircular canal formation","termid":"GO:0060876"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regionalization involved in semicircular canal formation","termid":"GO:0060877"}


id: PBO:0072143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 20","termid":"PBO:0072143"}


id: PBO:0036529
data:
  {"annotation_feature_type":"gene","cv_name":"genome_org","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alternative transcript","termid":"PBO:0036529"}


id: PBO:0087075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L37A; required for processing of 27SB pre-rRNA and formation of stable 66S assembly intermediates; homologous to mammalian ribosomal protein L37, no bacterial homolog; RPL37A has a paralog, RPL37B, that arose from the whole genome duplication","termid":"PBO:0087075"}


id: FYPO:0004792
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the distance between one or more telomeres and the nuclear envelope is smaller than normal during G2 phase of the mitotic cell cycle.","definition_xrefs":["PMID:22959349","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal telomere-nuclear envelope distance during vegetative growth","termid":"FYPO:0004790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased telomere-nuclear envelope distance during mitotic G2 phase","synonyms":[{"name":"decreased distance between telomeres and nuclear envelope during mitotic G2 phase","type":"exact"},{"name":"decreased telomere-nuclear envelope distance during G2 phase during mitotic cell cycle","type":"related"},{"name":"decreased telomere-nuclear envelope distance during mitotic G2 phase during vegetative growth","type":"exact"},{"name":"reduced telomere-nuclear envelope distance during mitotic G2 phase","type":"exact"}],"termid":"FYPO:0004792"}


id: PBO:0069802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1088, pseudogene","termid":"PBO:0069802"}


id: MONDO:1012807
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Primary ciliary dyskinesia that occurs in dogs due to a mutation in the NME5 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary ciliary dyskinesia, dog","termid":"MONDO:1012138"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary ciliary dyskinesia, NME5-related, dog","secondary_identifiers":["OMIA:002206-9615"],"termid":"MONDO:1012807","xrefs":{"Monarch":{"xref_id":"1012807"}}}


id: PBO:0055616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3055","termid":"PBO:0055616"}


id: PBO:0113143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase-activating protein for yeast Rab family members; Ypt1p is the preferred in vitro substrate but also acts on Sec4p, Ypt31p and Ypt32p; involved in the regulation of ER to Golgi vesicle transport; localizes to the ER and peroxisomes","termid":"PBO:0113143"}


id: MOD:00586
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:264"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphorylation to pyridyl thiol","synonyms":[{"name":"PET","type":"related"},{"name":"phosphorylation to pyridyl thiol","type":"related"}],"termid":"MOD:00586"}


id: FYPO:0001719
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to lithium ions. Cells stop growing (and may die) at a concentration of lithium ions that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000003","FYPO:0000139","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to lithium","synonyms":[{"name":"hypersensitive to lithium","type":"exact"},{"name":"sensitive to lithium during mitotic cell cycle","type":"related"},{"name":"sensitive to lithium during vegetative growth","type":"exact"},{"name":"sensitive to lithium ions","type":"exact"}],"termid":"FYPO:0001719"}


id: GO:0060100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of phagocytosis","termid":"GO:0050766"},{"relation_name":"is_a","term_name":"regulation of phagocytosis, engulfment","termid":"GO:0060099"},{"relation_name":"is_a","term_name":"positive regulation of membrane invagination","termid":"GO:1905155"},{"relation_name":"positively_regulates","term_name":"phagocytosis, engulfment","termid":"GO:0006911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0061024","GO:0006810","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"positive regulation of phagocytosis, engulfment","termid":"GO:0060100"}


id: PBO:0091397
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"This gene replaced SPAC823.02 which was previously annotated at this locus in the incorrect frame","termid":"PBO:0091397"}


id: FYECO:0000306
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"A sequential growth condition in which cells are first grown at a standard temperature, transferred to low, and then to high temperature.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping sequential growth conditions","termid":"FYECO:0000094"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"two-step temperature shift, standard to low, low to high","termid":"FYECO:0000306"}


id: GO:0007401
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete pan-neural process (obsolete GO:0007401)","synonyms":[{"name":"pan-neural process","type":"exact"}],"termid":"GO:0007401"}


id: FYPO:0005594
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at a replication fork pausing site within the eukaryotic rDNA repeat spacer is increased.","definition_xrefs":["PomBase:mah","PMID:25965521"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to chromatin at rDNA","termid":"FYPO:0004032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased protein localization to chromatin at rDNA replication fork barrier","synonyms":[{"name":"increased protein localisation to chromatin at rDNA replication fork barrier","type":"exact"},{"name":"increased protein localization to chromatin at rDNA replication fork barrier during mitotic cell cycle","type":"related"},{"name":"increased protein localization to chromatin at rDNA replication fork barrier during vegetative growth","type":"exact"},{"name":"increased protein localization to chromatin at ribosomal DNA replication fork barrier","type":"exact"}],"termid":"FYPO:0005594"}


id: PBO:0052587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine rich nucleolar protein 1 pseudogene 5","termid":"PBO:0052587"}


id: GO:0048856
data:
  {"annotated_genes":["SJAG_04275","SJAG_04236","SJAG_01662","SJAG_01943","SJAG_04853","SJAG_04509","SJAG_00114","SJAG_03581","SJAG_04781","SJAG_04080","SJAG_04901","SJAG_01894","SJAG_03688","SJAG_01531","SJAG_04010","SJAG_02718","SJAG_04470","SJAG_00971","SJAG_00845","SJAG_02864","SJAG_04184","SJAG_00821","SJAG_04922","SJAG_02248","SJAG_00663","SJAG_01993","SJAG_03746","SJAG_01017","SJAG_00405","SJAG_03090","SJAG_03483","SJAG_00514","SJAG_04615","SJAG_02320","SJAG_03915","SJAG_01769","SJAG_02529","SJAG_01483","SJAG_03057","SJAG_03013","SJAG_04238","SJAG_00826","SJAG_04140","SJAG_02241","SJAG_00974","SJAG_00993","SJAG_02712","SJAG_04271","SJAG_05309","SJAG_02169","SJAG_04859","SJAG_02700","SJAG_00486","SJAG_02989","SJAG_03587","SJAG_01321","SJAG_03557","SJAG_03536","SJAG_04483","SJAG_03250","SJAG_04868","SJAG_02392"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96484,97759,91744],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0051519"},{"annotations":[98443,102665,98859,113512,107088,114720],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0030437"},{"annotations":[95913,113317],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071998"},{"annotations":[96363],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034413"},{"annotations":[92127,90081,93665,90575],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030476"},{"annotations":[74763],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034412"},{"annotations":[106120,116098,119819,119811,111059],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070591"},{"annotations":[74765,93391,106941],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031321"},{"annotations":[109360,115945,107253,103655,112107,99477,120884,99514,101837,121067,97285,100754,93180,120583],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032120"},{"annotations":[101766,115946,109691,99478,104867,94183,106078,101767,98793,108805],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031322"},{"annotations":[89756,95914],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0042815"},{"annotations":[90129,100824,116341,94406,100212,100907],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1904600"},{"annotations":[113200],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0075297"},{"annotations":[92607],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0051517"},{"annotations":[104236],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0075296"},{"annotations":[92609],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1903024"},{"annotations":[59452],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0009791"},{"annotations":[94079],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0034307"},{"annotations":[101769,96411,101768,107983,102056,117992],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070583"}]},"cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.","definition_xrefs":["GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process","termid":"GO:0032502"}],"gene_count":62,"genes_by_uniquename":{"SJAG_00114":null,"SJAG_00405":null,"SJAG_00486":null,"SJAG_00514":null,"SJAG_00663":null,"SJAG_00821":null,"SJAG_00826":null,"SJAG_00845":null,"SJAG_00971":null,"SJAG_00974":null,"SJAG_00993":null,"SJAG_01017":null,"SJAG_01321":null,"SJAG_01483":null,"SJAG_01531":null,"SJAG_01662":null,"SJAG_01769":null,"SJAG_01894":null,"SJAG_01943":null,"SJAG_01993":null,"SJAG_02169":null,"SJAG_02241":null,"SJAG_02248":null,"SJAG_02320":null,"SJAG_02392":null,"SJAG_02529":null,"SJAG_02700":null,"SJAG_02712":null,"SJAG_02718":null,"SJAG_02864":null,"SJAG_02989":null,"SJAG_03013":null,"SJAG_03057":null,"SJAG_03090":null,"SJAG_03250":null,"SJAG_03483":null,"SJAG_03536":null,"SJAG_03557":null,"SJAG_03581":null,"SJAG_03587":null,"SJAG_03688":null,"SJAG_03746":null,"SJAG_03915":null,"SJAG_04010":null,"SJAG_04080":null,"SJAG_04140":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04238":null,"SJAG_04271":null,"SJAG_04275":null,"SJAG_04470":null,"SJAG_04483":null,"SJAG_04509":null,"SJAG_04615":null,"SJAG_04781":null,"SJAG_04853":null,"SJAG_04859":null,"SJAG_04868":null,"SJAG_04901":null,"SJAG_04922":null,"SJAG_05309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anatomical structure development","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"development of an anatomical structure","type":"exact"}],"termid":"GO:0048856","terms_by_termid":{"GO:0009791":null,"GO:0030437":null,"GO:0030476":null,"GO:0031321":null,"GO:0031322":null,"GO:0032120":null,"GO:0034307":null,"GO:0034412":null,"GO:0034413":null,"GO:0042815":null,"GO:0051517":null,"GO:0051519":null,"GO:0070583":null,"GO:0070591":null,"GO:0071998":null,"GO:0075296":null,"GO:0075297":null,"GO:1903024":null,"GO:1904600":null}}


id: MONDO:0007389
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any spondylocostal dysostosis in which the cause of the disease is a mutation in the TBX6 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spondylocostal dysostosis","termid":"MONDO:0000359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"spondylocostal dysostosis 5","secondary_identifiers":["UMLS:C4083048","OMIM:122600","DOID:0112363","MEDGEN:901825","NORD:1915"],"synonyms":[{"name":"SCDO5","type":"exact"},{"name":"Spondylothoracic Dysplasia","type":"related"},{"name":"TBX6 spondylocostal dysostosis","type":"exact"},{"name":"costovertebral segmentation anomalies","type":"exact"},{"name":"polydysspondyly","type":"related"},{"name":"scoliosis, congenital, with or without rib anomalies","type":"exact"},{"name":"spondylocostal dysostosis 5","type":"exact"},{"name":"spondylocostal dysostosis caused by mutation in TBX6","type":"exact"},{"name":"spondylocostal dysostosis type 5","type":"exact"},{"name":"spondylocostal dysplasia","type":"related"},{"name":"spondylothoracic dysostosis","type":"exact"}],"termid":"MONDO:0007389","xrefs":{"Monarch":{"xref_id":"0007389"}}}


id: MONDO:0013077
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Santos syndrome","secondary_identifiers":["MESH:C567819","OMIM:613005","UMLS:C2751698","MEDGEN:414444"],"synonyms":[{"name":"Santos syndrome","type":"exact"},{"name":"fibular agenesis/hypoplasia, oligodactylous clubfeet, and anonychia/nail hypoplasia syndrome","type":"related"}],"termid":"MONDO:0013077","xrefs":{"Monarch":{"xref_id":"0013077"}}}


id: GO:0042203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products.","definition_xrefs":["UM-BBD_pathwayID:tol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toluene metabolic process","termid":"GO:0018970"},{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"},{"relation_name":"is_a","term_name":"toluene-containing compound catabolic process","termid":"GO:0072491"},{"relation_name":"is_a","term_name":"hydrocarbon catabolic process","termid":"GO:0120253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"toluene catabolic process","synonyms":[{"name":"toluene breakdown","type":"exact"},{"name":"toluene catabolism","type":"exact"},{"name":"toluene degradation","type":"exact"}],"termid":"GO:0042203"}


id: FYPO:0001589
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the import of glutamate into the cell occurs to a lower extent than normal when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal glutamate import during nitrogen starvation","termid":"FYPO:0001647"},{"relation_name":"is_a","term_name":"decreased glutamate import","termid":"FYPO:0001649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"decreased glutamate import during nitrogen starvation","synonyms":[{"name":"decreased L-glutamate import across plasma membrane during nitrogen starvation","type":"exact"},{"name":"decreased L-glutamate import during nitrogen starvation","type":"exact"},{"name":"decreased glutamate import during nitrogen depletion","type":"exact"},{"name":"decreased glutamate import during nitrogen deprivation","type":"exact"},{"name":"decreased glutamate import into cell during nitrogen starvation","type":"exact"},{"name":"decreased glutamate transport into cell during nitrogen starvation","type":"exact"},{"name":"decreased glutamate uptake during nitrogen starvation","type":"exact"},{"name":"reduced glutamate import during nitrogen starvation","type":"exact"}],"termid":"FYPO:0001589"}


id: PBO:0066706
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 3","termid":"PBO:0066706"}


id: MONDO:0020026
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Rare female infertility.","definition_xrefs":["MONDO:patterns/rare"],"gene_count":0,"genotype_count":0,"name":"obsolete rare female infertility (obsolete MONDO:0020026)","secondary_identifiers":["Orphanet:98049"],"synonyms":[{"name":"rare female infertility","type":"exact"}],"termid":"MONDO:0020026","xrefs":{"Monarch":{"xref_id":"0020026"}}}


id: GO:0034965
data:
  {"annotated_genes":["SJAG_01369","SJAG_06613","SJAG_02553","SJAG_03234"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92974,106735,115501,117327],"is_not":false,"summary":null,"term":"GO:0034965"}]},"cv_name":"biological_process","definition":"Any process involved in the conversion of a primary box C/D type small nucleolar RNA (snoRNA) transcript that resides within, and is processed from, the intron of a pre-mRNA into a mature box C/D snoRNA.","definition_xrefs":["GOC:mah","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intronic snoRNA processing","termid":"GO:0031070"},{"relation_name":"is_a","term_name":"box C/D sno(s)RNA processing","termid":"GO:0034963"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01369":null,"SJAG_02553":null,"SJAG_03234":null,"SJAG_06613":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016074"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0016074","GO:0010467"],"is_obsolete":false,"name":"intronic box C/D snoRNA processing","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0034965","terms_by_termid":{"GO:0034965":null}}


id: PBO:0048760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"germ cell-less 1, spermatogenesis associated","termid":"PBO:0048760"}


id: MONDO:0004694
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hepatopulmonary syndrome (HPS) is a lung disease characterized by widening of arteries and veins (dilatation) in the lungs in people who have chronic liver disease. Because of the dilated vases, the workload of the heart increases and the blood pumped to the body does not have enough oxygen, leading to a decreased level of oxygen in the blood (hypoxemia). The normal diameter of the lung vessels ranges between 8 and 15 μm whereas when in HPS rises to between 15 and 500 μm. While many people with HPS don't have any obvious problems, the main reported symptom is shortness of breath (dyspnea) that is worse when standing or sitting up, and is relieved when lying down (platypnea). Symptoms related to chronic liver disease (generally cirrhosis) include small red spots on the skin (spider angiomas) and abnormal vascular dilatations. Some other symptoms that have been described are infections in the brain (brain abscesses), brain bleeding and an increased number of red blood cells in the blood (polycythemia). There is currently no effective medication for HPS. Oxygen therapy may improve the breathing in some cases. Liver transplant is an efficient treatment which improves the symptoms, even in severe cases.","direct_ancestors":[{"relation_name":"is_a","term_name":"liver disorder","termid":"MONDO:0005154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"hepatopulmonary syndrome","secondary_identifiers":["ICD9:417.8","EFO:1001346","SCTID:371067004","icd11.foundation:866605228","ICD10CM:K76.81","ICD9:573.5","MEDGEN:109071","UMLS:C0600452","DOID:900","MESH:D020065"],"termid":"MONDO:0004694","xrefs":{"Monarch":{"xref_id":"0004694"}}}


id: MONDO:0005681
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete MONDO:0005681 (obsolete MONDO:0005681)","termid":"MONDO:0005681","xrefs":{"Monarch":{"xref_id":"0005681"}}}


id: GO:0016420
data:
  {"annotated_genes":["SJAG_03972","SJAG_04107"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71975,60286],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004314"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a malonyl (HOOC-CH2-CO-) group to an acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03972":null,"SJAG_04107":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016746","GO:0003674"],"is_obsolete":false,"name":"malonyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null},"termid":"GO:0016420","terms_by_termid":{"GO:0004314":null}}


id: MONDO:0005774
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition resulting from infection by Burkholderia mallei, which mainly affects horses.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary bacterial infectious disease","termid":"MONDO:0000314"},{"relation_name":"is_a","term_name":"burkholderia infectious disease","termid":"MONDO:0043953"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glanders","secondary_identifiers":["ICD9:024","MESH:D005896","UMLS:C0017589","MEDGEN:42221","Orphanet:659908","SCTID:4639008","EFO:0007286","ICD10CM:A24.0","icd11.foundation:1563156715","NCIT:C34638","DOID:13444"],"synonyms":[{"name":"Burkholderia mallei","type":"related"},{"name":"Burkholderia mallei caused disease or disorder","type":"exact"},{"name":"Burkholderia mallei disease or disorder","type":"exact"},{"name":"Burkholderia mallei infection","type":"related"},{"name":"Burkholderia mallei infectious disease","type":"exact"},{"name":"farcy pipes","type":"exact"},{"name":"infection due to Pseudomonas mallei","type":"exact"}],"termid":"MONDO:0005774","xrefs":{"Monarch":{"xref_id":"0005774"}}}


id: MONDO:0003878
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A uveal melanoma that arises from the choroid. It is the most common primary malignant intraocular tumor. It usually affects Caucasians of northern European descent. It usually remains asymptomatic for a long period. When signs and symptoms occur, they include blurred vision, visual field loss, floaters, and ocular pain. Tumor size is the most important factor that relates to prognosis.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uveal melanoma","termid":"MONDO:0006486"},{"relation_name":"is_a","term_name":"choroid cancer","termid":"MONDO:0006700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005328"],"is_obsolete":false,"name":"malignant choroid melanoma","secondary_identifiers":["UMLS:C0346388","NCIT:C4561","MONDO:0021436","MEDGEN:138064","DOID:6438","SCTID:255021005"],"synonyms":[{"name":"choroid malignant melanoma","type":"exact"},{"name":"choroid melanoma","type":"exact"},{"name":"choroidal melanoma","type":"exact"},{"name":"malignant melanoma of choroid","type":"exact"},{"name":"malignant melanoma of the choroid","type":"exact"},{"name":"melanoma (disease) of optic choroid","type":"exact"},{"name":"melanoma of choroid","type":"exact"},{"name":"melanoma of the choroid","type":"exact"},{"name":"optic choroid melanoma","type":"exact"},{"name":"optic choroid melanoma (disease)","type":"exact"}],"termid":"MONDO:0003878","xrefs":{"Monarch":{"xref_id":"0003878"}}}


id: FYPO:0004433
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to viridicatumtoxin. Cells stop growing (and may die) at a concentration of viridicatumtoxin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah","PMID:18204818"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0005447","FYPO:0002683","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to viridicatumtoxin","synonyms":[{"name":"hypersensitive to viridicatumtoxin","type":"exact"},{"name":"sensitive to viridicatumtoxin during mitotic cell cycle","type":"related"},{"name":"sensitive to viridicatumtoxin during vegetative growth","type":"exact"}],"termid":"FYPO:0004433"}


id: PBO:0082360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Autophagy-related protein and dual specificity member of the E1 family; mediates the attachment of Atg12p to Atg5p and Atg8p to phosphatidylethanolamine which are required steps in autophagosome formation; E1 enzymes are also known as ubiquitin-activating enzymes; involved in methionine restriction extension of chronological lifespan in an autophagy-dependent manner","termid":"PBO:0082360"}


id: PBO:0088286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF1774 family multi-spanning conserved fungal membrane protein","termid":"PBO:0088286"}


id: GO:0004100
data:
  {"annotated_genes":["SJAG_04868","SJAG_00442"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76004,76214],"is_not":false,"summary":null,"term":"GO:0004100"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + [->4)-N-acetyl-beta-D-glucosaminyl-(1-](n) = UDP + [->4)-N-acetyl-beta-D-glucosaminyl-(1-](n+1).","definition_xrefs":["EC:2.4.1.16"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00442":null,"SJAG_04868":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"chitin synthase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["RHEA:16637","MetaCyc:CHITIN-SYNTHASE-RXN"],"synonyms":[{"name":"UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyl-transferase activity","type":"related"},{"name":"chitin synthetase activity","type":"related"},{"name":"chitin-UDP N-acetylglucosaminyltransferase activity","type":"related"},{"name":"chitin-UDP acetyl-glucosaminyl transferase activity","type":"related"},{"name":"chitin-uridine diphosphate acetylglucosaminyltransferase activity","type":"related"},{"name":"trans-N-acetylglucosaminosylase activity","type":"related"}],"termid":"GO:0004100","terms_by_termid":{"GO:0004100":null}}


id: PBO:0012046
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"processive helicase activity of Mcm4/6/7 complex requires 3' and 5' overhangs","termid":"PBO:0012046"}


id: PBO:0087846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Topoisomerase I; nuclear enzyme that relieves torsional strain in DNA by cleaving and re-sealing the phosphodiester backbone; relaxes both positively and negatively supercoiled DNA; functions in replication, transcription, and recombination; role in processing ribonucleoside monophosphates in genomic DNA into irreversible single-strand breaks; enzymatic activity and interaction with Nsr1p are negatively regulated by polyphosphorylation","termid":"PBO:0087846"}


id: GO:2000697
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of epithelial cell differentiation involved in kidney development.","definition_xrefs":["GOC:mtg_kidney_jan10","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of epithelial cell differentiation","termid":"GO:0030857"},{"relation_name":"is_a","term_name":"regulation of epithelial cell differentiation involved in kidney development","termid":"GO:2000696"},{"relation_name":"negatively_regulates","term_name":"epithelial cell differentiation involved in kidney development","termid":"GO:0035850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of epithelial cell differentiation involved in kidney development","termid":"GO:2000697"}


id: PR:O74350
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- bdc1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74350"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bromodomain-containing protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21D10.10","synonyms":[{"name":"Spom972h-bdc1","type":"exact"}],"termid":"PR:O74350"}


id: MONDO:0012289
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Muscle filaminopathy is a rare myofibrillar myopathy characterized by slowly progressive, proximal skeletal muscle weakness, which is initially more prominent in lower extremities and involves upper extremities with disease progression. Patients present with difficulty climbing stairs, a waddling gait, marked winging of scapula, lower back pain, paresis of limb girdle musculature, hypo-/areflexia and/or mild facial muscle weakness in rare cases. Respiratory muscle weakness is common and cardiac anomalies (conduction blocks, tachycardia, diastolic dysfunction, left ventricular hypertrophy) have been reported in some cases.","definition_xrefs":["Orphanet:171445"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"qualitative or quantitative defects of filamin C","termid":"MONDO:0016189"},{"relation_name":"is_a","term_name":"myofibrillar myopathy","termid":"MONDO:0018943"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005336"],"is_obsolete":false,"name":"myofibrillar myopathy 5","secondary_identifiers":["DOID:0080096","MEDGEN:372186","OMIM:609524","GARD:17062","UMLS:C1836050","MESH:C537932"],"synonyms":[{"name":"FLNC myofibrillar myopathy (disease)","type":"exact"},{"name":"MFM5","type":"related"},{"name":"filaminopathy","type":"exact"},{"name":"filaminopathy, autosomal dominant","type":"related"},{"name":"muscle filaminopathy","type":"related"},{"name":"myofibrillar myopathy (disease) caused by mutation in FLNC","type":"exact"},{"name":"myofibrillar myopathy 5","type":"exact"},{"name":"myofibrillar myopathy type 5","type":"exact"},{"name":"myopathy, myofibrillar, 5","type":"related"},{"name":"myopathy, myofibrillar, filamin C-related","type":"related"},{"name":"myopathy, myofibrillar, type 5","type":"exact"}],"termid":"MONDO:0012289","xrefs":{"Monarch":{"xref_id":"0012289"}}}


id: PBO:0044510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytokine like 1","termid":"PBO:0044510"}


id: MONDO:0013229
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hot water reflex epilepsy is a rare neurologic disease characterized by the onset of generalized or focal seizures following immersion of the head in hot water, or with hot water being poured over the head. Primary generalized tonic-clonic seizures have been reported in rare cases.","definition_xrefs":["Orphanet:166412"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited reflex epilepsy","termid":"MONDO:0023224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"hot water reflex epilepsy","secondary_identifiers":["MEDGEN:1631373","OMIMPS:613339","SCTID:230454005","DOID:0081104","UMLS:C4706506","GARD:17028","ICD9:345.10"],"synonyms":[{"name":"bathing epilepsy","type":"related"},{"name":"epilepsy, hot water","type":"exact"},{"name":"hot water epilepsy","type":"exact"},{"name":"water immersion epilepsy","type":"related"}],"termid":"MONDO:0013229","xrefs":{"Monarch":{"xref_id":"0013229"}}}


id: PBO:0005531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfite reductase NADPH flavoprotein subunit (predicted)","termid":"PBO:0005531"}


id: FYPO:0004902
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is elongated, has more than one septum and more than one nucleus, and is curved along the long axis.","definition_xrefs":["PomBase:mah","PMID:25530312"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated multinucleate vegetative cell","termid":"FYPO:0000133"},{"relation_name":"is_a","term_name":"elongated multiseptate vegetative cell","termid":"FYPO:0000223"},{"relation_name":"is_a","term_name":"multinucleate multiseptate vegetative cell","termid":"FYPO:0001252"},{"relation_name":"is_a","term_name":"curved elongated vegetative cell","termid":"FYPO:0005103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000032","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"curved, elongated, multinucleate multiseptate vegetative cell","synonyms":[{"name":"curved, elongated, multinucleate multiseptate cell during vegetative growth","type":"exact"},{"name":"curved, elongated, multinucleate multiseptate vegetative cell during mitotic cell cycle","type":"related"},{"name":"curved, long, multinucleate multiseptate cell","type":"exact"}],"termid":"FYPO:0004902"}


id: MOD:01354
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an N4 hydrogen atom of an asparagine residue with a carbohydrate-like group composed of Hex1HexNAc1NeuAc1 linked through a glycosidic bond.","definition_xrefs":["PubMed:11698400","Unimod:149#N"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"},{"relation_name":"is_a","term_name":"Hex1HexNAc1NeuAc1 glycosylated residue","termid":"MOD:00517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"Hex1HexNAc1NeuAc1 N4-glycosylated asparagine","synonyms":[{"name":"Hex(1)HexNAc(1)NeuAc(1)","type":"related"},{"name":"Hex1HexNAc1NeuAc1","type":"related"}],"termid":"MOD:01354"}


id: SO:0000505
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene and one DJ-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"D_gene_segment","termid":"SO:0000458"},{"relation_name":"has_part","term_name":"DJ_gene_segment","termid":"SO:0000572"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D_DJ_cluster","synonyms":[{"name":"D DJ cluster","type":"exact"},{"name":"D-(DJ)-CLUSTER","type":"exact"}],"termid":"SO:0000505"}


id: PBO:0057209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 376c","termid":"PBO:0057209"}


id: PBO:0074402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small integral membrane protein 10 like 1","termid":"PBO:0074402"}


id: MONDO:0006094
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primitive neuroectodermal tumor (small round blue cell tumor) of the thorax which can involve the periosteum, thoracic wall and/or pleura though it spares the lung parenchyma.","definition_xrefs":["NCIT:C7542"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thoracic cancer","termid":"MONDO:0003274"},{"relation_name":"is_a","term_name":"peripheral primitive neuroectodermal tumor","termid":"MONDO:0018271"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"Askin tumor","secondary_identifiers":["MEDGEN:209112","DOID:0050608","MESH:C563168","UMLS:C0877849","ICDO:9365/3","EFO:1000095"],"synonyms":[{"name":"Askin tumor","type":"exact"},{"name":"Askin's tumor","type":"exact"},{"name":"Askin's tumour","type":"exact"},{"name":"PNET of thoracopulmonary region","type":"exact"},{"name":"peripheral neuroectodermal tumor of thoracopulmonary region","type":"exact"},{"name":"peripheral neuroectodermal tumour of thoracopulmonary region","type":"exact"},{"name":"small cell tumor of thoracopulmonary region","type":"exact"},{"name":"small cell tumour of thoracopulmonary region","type":"exact"}],"termid":"MONDO:0006094","xrefs":{"Monarch":{"xref_id":"0006094"}}}


id: GO:0009853
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic compound salvage","termid":"GO:0043094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"photorespiration","secondary_identifiers":["Wikipedia:Photorespiration","MetaCyc:PWY-181"],"synonyms":[{"name":"photorespiratory pathway","type":"exact"}],"termid":"GO:0009853"}


id: MONDO:0008536
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"temperature-sensitive lethal mutation","secondary_identifiers":["MEDGEN:396088","UMLS:C1861242","OMIM:187340"],"synonyms":[{"name":"temperature-sensitive lethal mutation","type":"exact"}],"termid":"MONDO:0008536","xrefs":{"Monarch":{"xref_id":"0008536"}}}


id: GO:0050629
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: trichloroethene + chloride + acceptor = tetrachloroethene + reduced acceptor. The reaction occurs in the reverse direction.","definition_xrefs":["RHEA:20353"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond","termid":"GO:0046992"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"tetrachloroethene reductive dehalogenase activity","secondary_identifiers":["MetaCyc:1.97.1.8-RXN","EC:1.21.99.5"],"synonyms":[{"name":"acceptor:trichloroethene oxidoreductase (chlorinating)","type":"related"},{"name":"tetrachloroethene reductase activity","type":"related"}],"termid":"GO:0050629"}


id: PBO:0017732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ABC family iron transmembrane transporter Atm1","termid":"PBO:0017732"}


id: MONDO:0012135
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"restless legs syndrome, susceptibility to","termid":"MONDO:0100170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"restless legs syndrome, susceptibility to, 2","secondary_identifiers":["UMLS:C1837285","MEDGEN:324722","OMIM:608831"],"synonyms":[{"name":"RLS2","type":"exact"},{"name":"restless legs syndrome 2","type":"exact"},{"name":"restless legs syndrome, susceptibility to, 2","type":"exact"}],"termid":"MONDO:0012135","xrefs":{"Monarch":{"xref_id":"0012135"}}}


id: SO:0000045
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"To remove a subsection of sequence.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000045 delete (obsolete SO:0000045)","termid":"SO:0000045"}


id: MONDO:0011164
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"malignant hyperthermia, susceptibility to","termid":"MONDO:0800188"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malignant hyperthermia, susceptibility to, 6","secondary_identifiers":["MEDGEN:356150","UMLS:C1866076","OMIM:601888","MESH:C535699"],"synonyms":[{"name":"MHS6","type":"related"},{"name":"Mhs6","type":"related"},{"name":"malignant hyperpyrexia susceptibility type 6","type":"related"},{"name":"malignant hyperthermia susceptibility 6","type":"exact"},{"name":"malignant hyperthermia susceptibility type 6","type":"related"},{"name":"malignant hyperthermia, susceptibility to, 6","type":"exact"},{"name":"malignant hyperthermia, susceptibility to, type 6","type":"exact"}],"termid":"MONDO:0011164","xrefs":{"Monarch":{"xref_id":"0011164"}}}


id: GO:0072341
data:
  {"annotated_genes":["SJAG_01351","SJAG_03170","SJAG_04031","SJAG_02572","SJAG_04077","SJAG_00053","SJAG_05181","SJAG_00869"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101202,72218],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043295"},{"annotations":[92297,89860,104373,106336],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001786"},{"annotations":[59553,65966],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031177"}]},"cv_name":"molecular_function","definition":"Binding to a modified amino acid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding","termid":"GO:0005488"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00053":null,"SJAG_00869":null,"SJAG_01351":null,"SJAG_02572":null,"SJAG_03170":null,"SJAG_04031":null,"SJAG_04077":null,"SJAG_05181":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"modified amino acid binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"amino acid derivative binding","type":"exact"}],"termid":"GO:0072341","terms_by_termid":{"GO:0001786":null,"GO:0031177":null,"GO:0043295":null}}


id: GO:0045642
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of basophil differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of granulocyte differentiation","termid":"GO:0030854"},{"relation_name":"is_a","term_name":"regulation of basophil differentiation","termid":"GO:0045640"},{"relation_name":"positively_regulates","term_name":"basophil differentiation","termid":"GO:0030221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of basophil differentiation","synonyms":[{"name":"activation of basophil differentiation","type":"narrow"},{"name":"stimulation of basophil differentiation","type":"narrow"},{"name":"up regulation of basophil differentiation","type":"exact"},{"name":"up-regulation of basophil differentiation","type":"exact"},{"name":"upregulation of basophil differentiation","type":"exact"}],"termid":"GO:0045642"}


id: GO:0015010
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving tetrahydrocorphins, tetrapyrroles that combine the structural elements of both porphyrins and corrins.","definition_xrefs":["Wikipedia:Morphine"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nickel-tetrapyrrole coenzyme metabolic process","termid":"GO:0015011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"tetrahydrocorphin metabolic process","synonyms":[{"name":"tetrahydrocorphin metabolism","type":"exact"}],"termid":"GO:0015010"}


id: GO:0035295
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a tube over time, from its initial formation to a mature structure. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts.","definition_xrefs":["PMID:12526790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"multicellular organism development","termid":"GO:0007275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tube development","termid":"GO:0035295"}


id: PBO:0039401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANAPC1 pseudogene 6","termid":"PBO:0039401"}


id: MONDO:0018200
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete acute encephalopathy with inflammation-mediated status epilepticus (obsolete MONDO:0018200)","secondary_identifiers":["Orphanet:363567"],"termid":"MONDO:0018200","xrefs":{"Monarch":{"xref_id":"0018200"}}}


id: GO:0098669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which a preexisting viral infection prevents a secondary infection with the same or a closely related virus. Typically some aspect of viral entry is inhibited, but post entry mechanisms have also been documented.","definition_xrefs":["VZ:3971","PMID:11985726","PMID:24089557","PMID:8012757","PMID:23692331"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"superinfection exclusion","termid":"GO:0098669"}


id: GO:1902320
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any DNA duplex unwinding that is involved in nuclear cell cycle DNA replication.","definition_xrefs":["GOC:TermGenie","GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete nuclear DNA replication DNA duplex unwinding (obsolete GO:1902320)","synonyms":[{"name":"DNA duplex unwinding involved in DNA replication during S phase","type":"related"},{"name":"DNA duplex unwinding involved in DNA replication involved in S phase","type":"exact"},{"name":"DNA duplex unwinding involved in DNA replication involved in S-phase","type":"exact"},{"name":"DNA duplex unwinding involved in nuclear cell cycle DNA replication","type":"exact"},{"name":"DNA unwinding involved in DNA replication during S phase","type":"related"},{"name":"DNA unwinding involved in DNA replication involved in S phase","type":"exact"},{"name":"DNA unwinding involved in DNA replication involved in S-phase","type":"exact"},{"name":"DNA unwinding involved in nuclear cell cycle DNA replication","type":"exact"},{"name":"duplex DNA melting involved in DNA replication during S phase","type":"related"},{"name":"duplex DNA melting involved in DNA replication involved in S phase","type":"exact"},{"name":"duplex DNA melting involved in DNA replication involved in S-phase","type":"exact"}],"termid":"GO:1902320"}


id: GO:0030449
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of complement activation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immune effector process","termid":"GO:0002697"},{"relation_name":"is_a","term_name":"regulation of humoral immune response","termid":"GO:0002920"},{"relation_name":"regulates","term_name":"complement activation","termid":"GO:0006956"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of complement activation","secondary_identifiers":["Reactome:R-HSA-977606"],"synonyms":[{"name":"regulation of complement cascade","type":"exact"}],"termid":"GO:0030449"}


id: PBO:0058607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6739","termid":"PBO:0058607"}


id: GO:0097615
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism effects a change in the type IV pilus-dependent motility of a symbiont organism (i.e. the controlled movement of a bacterial cell which is dependent on the presence of type IV pili, and which includes social gliding motility and twitching motility). The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:als","PMID:12037568"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by host of symbiont type IV pilus-dependent motility (obsolete GO:0097615)","synonyms":[{"name":"modulation by host of bacterial type IV pilus-dependent motility","type":"exact"}],"termid":"GO:0097615"}


id: MONDO:0700179
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Osteosarcoma that occurs in a cat.","definition_xrefs":["NCIT:C132825"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feline neoplasm","termid":"MONDO:0700175"},{"relation_name":"is_a","term_name":"osteosarcoma, non-human animal","termid":"MONDO:1010212"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"feline osteosarcoma","termid":"MONDO:0700179","xrefs":{"Monarch":{"xref_id":"0700179"}}}


id: PBO:0080536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASH and IL9R antisense RNA 1","termid":"PBO:0080536"}


id: PBO:0005044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Set3 complex subunit Hif2","termid":"PBO:0005044"}


id: GO:1990038
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The periphery of a Lewy body. In Parkinson's disease, it contains spherical accumulations of filaments arranged in a loose, radiating array.","definition_xrefs":["NIF_Subcellular:sao5764355747"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"Lewy body","termid":"GO:0097413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"Lewy body corona","synonyms":[{"name":"halo","type":"broad"}],"termid":"GO:1990038"}


id: PBO:0031767
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_antimycin_A","termid":"PBO:0031767"}


id: GO:0045631
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mechanoreceptor differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neuron differentiation","termid":"GO:0045664"},{"relation_name":"regulates","term_name":"mechanoreceptor differentiation","termid":"GO:0042490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mechanoreceptor differentiation","termid":"GO:0045631"}


id: PBO:0064939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyglutamine binding protein 1","termid":"PBO:0064939"}


id: MONDO:0013920
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A Mendelian susceptibility or predisposition to herpes simplex infection induced encephalitis in which the cause of the diseas is a mutation in the TRAF3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"encephalopathy, acute, infection-induced","termid":"MONDO:0000166"},{"relation_name":"excluded_subClassOf","term_name":"herpes simplex encephalitis","termid":"MONDO:0012521"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"herpes simplex encephalitis, susceptibility to, 3","secondary_identifiers":["MEDGEN:766782","OMIM:614849","UMLS:C3553868"],"synonyms":[{"name":"Herpes simplex encephalitis, susceptibility to, type 3","type":"exact"},{"name":"IIAE5","type":"related"},{"name":"TRAF3 herpes simplex encephalitis","type":"exact"},{"name":"encephalopathy, acute, infection-induced (HERPES-specific), susceptibility to, 5","type":"related"},{"name":"encephalopathy, acute, infection-induced (Herpes-specific), susceptibility to, 5","type":"related"},{"name":"encephalopathy, acute, infection-induced, susceptibility to, 5","type":"related"},{"name":"herpes simplex encephalitis caused by mutation in TRAF3","type":"exact"},{"name":"herpes simplex encephalitis, susceptibility to, 3","type":"exact"}],"termid":"MONDO:0013920","xrefs":{"Monarch":{"xref_id":"0013920"}}}


id: MONDO:0003154
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hemangioma arising from the peripheral nerves.","definition_xrefs":["NCIT:C27507"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system hemangioma","termid":"MONDO:0003241"},{"relation_name":"is_a","term_name":"benign neoplasm of peripheral nervous system","termid":"MONDO:0056804"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemangioma of peripheral nerve","secondary_identifiers":["UMLS:C1333956","DOID:482","MEDGEN:232595"],"synonyms":[{"name":"hemangioma of nerve","type":"exact"},{"name":"hemangioma of peripheral nerve","type":"exact"},{"name":"nerve hemangioma","type":"exact"}],"termid":"MONDO:0003154","xrefs":{"Monarch":{"xref_id":"0003154"}}}


id: MONDO:0012993
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"dyschromatosis universalis hereditaria","termid":"MONDO:0000736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"dyschromatosis universalis hereditaria 2","secondary_identifiers":["GARD:15581","MEDGEN:382542","UMLS:C2675183","MESH:C567194","OMIM:612715"],"synonyms":[{"name":"DUH2","type":"related"},{"name":"dyschromatosis universalis hereditaria 2","type":"exact"}],"termid":"MONDO:0012993","xrefs":{"Monarch":{"xref_id":"0012993"}}}


id: GO:0009865
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the pollen tube adheres to cells of the stigma and style.","definition_xrefs":["GOC:tair_curators","PMID:12602877"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological process involved in intraspecies interaction between organisms","termid":"GO:0051703"},{"relation_name":"is_a","term_name":"cell-cell adhesion","termid":"GO:0098609"},{"relation_name":"part_of","term_name":"pollen-pistil interaction","termid":"GO:0009875"},{"relation_name":"part_of","term_name":"pollen tube development","termid":"GO:0048868"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"pollen tube adhesion","termid":"GO:0009865"}


id: GO:0015786
data:
  {"annotated_genes":["SJAG_04406","SJAG_04162"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76826],"is_not":false,"summary":null,"term":"GO:0015786"},{"annotations":[114381],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120112"}]},"cv_name":"biological_process","definition":"The process in which UDP-glucose is transported across a membrane.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"},{"relation_name":"is_a","term_name":"pyrimidine nucleotide-sugar transmembrane transport","termid":"GO:0090481"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04162":null,"SJAG_04406":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"UDP-glucose transmembrane transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0015786","terms_by_termid":{"GO:0015786":null,"GO:0120112":null}}


id: GO:0001910
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of leukocyte mediated cytotoxicity.","definition_xrefs":["GOC:add","PMID:11911826","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte mediated immunity","termid":"GO:0002703"},{"relation_name":"is_a","term_name":"regulation of cell killing","termid":"GO:0031341"},{"relation_name":"regulates","term_name":"leukocyte mediated cytotoxicity","termid":"GO:0001909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of leukocyte mediated cytotoxicity","synonyms":[{"name":"regulation of immune cell mediated cell death","type":"exact"},{"name":"regulation of immune cell mediated cell killing","type":"exact"},{"name":"regulation of immune cell mediated cytotoxicity","type":"exact"},{"name":"regulation of leucocyte mediated cytotoxicity","type":"exact"}],"termid":"GO:0001910"}


id: SO:0001492
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A regulatory region that is part of an intron.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcriptional_cis_regulatory_region","termid":"SO:0001055"},{"relation_name":"part_of","term_name":"intron","termid":"SO:0000188"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intronic_regulatory_region","synonyms":[{"name":"intronic regulatory region","type":"exact"}],"termid":"SO:0001492"}


id: MONDO:0005963
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition resulting from infection with the second stage larvae of the parasite Spirometra.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Cestode infectious disease","termid":"MONDO:0042488"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sparganosis","secondary_identifiers":["DOID:10080","ICD9:123.5","SCTID:31659000","EFO:0007488","MESH:D013031","NCIT:C35030","UMLS:C0037753","ICD10CM:B70.1","icd11.foundation:22873958","MEDGEN:52426"],"synonyms":[{"name":"Spirometra caused disease or disorder","type":"exact"},{"name":"Spirometra disease or disorder","type":"exact"},{"name":"Spirometra infectious disease","type":"exact"},{"name":"infection by sparganum","type":"exact"},{"name":"sparganosis [larval diphyllobothriasis]","type":"exact"}],"termid":"MONDO:0005963","xrefs":{"Monarch":{"xref_id":"0005963"}}}


id: SO:0000056
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of chromosome variation where the chromosome complement is not an exact multiple of the haploid number as some chromosomes are missing.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aneuploid","termid":"SO:0000054"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypoploid","secondary_identifiers":["http://en.wikipedia.org/wiki/Hypoploid"],"termid":"SO:0000056"}


id: PBO:0034097
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-is_preventative_for_condition","termid":"PBO:0034097"}


id: PBO:0031071
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_stress_during_vegetative_growth","termid":"PBO:0031071"}


id: PBO:0071509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L34 pseudogene 12","termid":"PBO:0071509"}


id: GO:0000324
data:
  {"annotated_genes":["SJAG_04867","SJAG_04725","SJAG_02231","SJAG_02103","SJAG_04616","SJAG_01571","SJAG_04698","SJAG_01619","SJAG_05342","SJAG_02132","SJAG_03656","SJAG_01183","SJAG_04232","SJAG_02694","SJAG_03725","SJAG_02356","SJAG_00209","SJAG_03072","SJAG_03606","SJAG_04714","SJAG_05184","SJAG_01027","SJAG_04910","SJAG_03406","SJAG_01471","SJAG_05213","SJAG_00638","SJAG_04643","SJAG_03895","SJAG_00877","SJAG_03442","SJAG_00018","SJAG_03652","SJAG_03316","SJAG_02432","SJAG_03586","SJAG_05245","SJAG_02957","SJAG_01095","SJAG_02581","SJAG_01612","SJAG_00181","SJAG_02330","SJAG_03400","SJAG_04717","SJAG_04502","SJAG_00771","SJAG_01036","SJAG_01299","SJAG_02196","SJAG_00821","SJAG_05294","SJAG_03022","SJAG_02665","SJAG_02656","SJAG_03250","SJAG_04966","SJAG_02603","SJAG_00457","SJAG_02962","SJAG_03363","SJAG_02716","SJAG_03909","SJAG_01493","SJAG_00589","SJAG_02495","SJAG_00299","SJAG_01088","SJAG_07012","SJAG_00212","SJAG_00732","SJAG_00587","SJAG_01344","SJAG_04975","SJAG_01507","SJAG_03976","SJAG_00516","SJAG_04819","SJAG_02433","SJAG_00132","SJAG_01407","SJAG_04015","SJAG_03403","SJAG_00051","SJAG_01868","SJAG_02289","SJAG_01505","SJAG_03100","SJAG_02440","SJAG_05194","SJAG_02344","SJAG_02029","SJAG_02114","SJAG_03928","SJAG_01319","SJAG_01032","SJAG_01941","SJAG_03447","SJAG_03508","SJAG_02902","SJAG_04955","SJAG_04790","SJAG_03450","SJAG_02565","SJAG_03089","SJAG_01795","SJAG_05210","SJAG_00570","SJAG_03951","SJAG_03256","SJAG_03137","SJAG_02023","SJAG_01817","SJAG_04167","SJAG_02414","SJAG_01990","SJAG_04471","SJAG_00620","SJAG_00402","SJAG_01219","SJAG_00824","SJAG_01983","SJAG_01145","SJAG_03371","SJAG_01803","SJAG_04963","SJAG_02782","SJAG_03009","SJAG_03405","SJAG_01978","SJAG_02100","SJAG_04506","SJAG_03848","SJAG_00534","SJAG_01072","SJAG_04023","SJAG_04785","SJAG_00115","SJAG_03785","SJAG_01080","SJAG_04312","SJAG_01236","SJAG_03511","SJAG_04426","SJAG_00688","SJAG_00029","SJAG_01400","SJAG_03987","SJAG_02060","SJAG_03497","SJAG_03667","SJAG_04637","SJAG_01913","SJAG_03138","SJAG_02578","SJAG_02943","SJAG_02117","SJAG_01112","SJAG_01783","SJAG_03960","SJAG_01078","SJAG_01991","SJAG_01373","SJAG_02699","SJAG_03355","SJAG_03899","SJAG_01324","SJAG_01509","SJAG_01033","SJAG_01320","SJAG_02853","SJAG_02076","SJAG_03608"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[62363,62552,71987,72326,72333,72647,73720,74191,74604,75523,75675,76777,77040,77629,77953,78459,80215,80354,81733,82167,89804,90004,90312,92014,92015,96727,96990,98414,98883,99525,100453,100458,103458,103789,105711,105945,106345,109511,109599,110804,111327,111425,111442,111790,114348,114736,114869,116185,118850,119983],"is_not":false,"summary":null,"term":"GO:0000324"},{"annotations":[95810,117872,116463,115314,70298,72597,89334,99766,116189,99556,103607,107719],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000328"},{"annotations":[82068,72277,91026,111365,98012,75846,111860,98050,101876,89596,99545,111279,112249,80921,91012,116360,74806,96528,106937,99274,110664,81903,101909,118572,105856,80249,108652,95420,105534,95923,101499,77079,103912,105741,96497,73686,119049,78287,90964,102164,119283,119635,100748,74402,76750,71872,74626,95661,99965,109822,110259,112387,81656,109120,97936,115567,90943,119576,109371,113787,95787,118216,89882,100619,80389,104957,106866,115243,93388,118644,119409,81554,103572,71034,119838,116895,108645,116353,72650,94786,97894,97810,95947,107677,78215,107094,109164,75158,76624,76255,74292,120239,92273,94870,97560,100474,115427,74508,74587,97675,72453,98331,73927,81503,95602,81842,100788,72150,89900,95660,93944],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000329"}]},"cv_name":"cellular_component","definition":"A vacuole that has both lytic and storage functions. The fungal vacuole is a large, membrane-bounded organelle that functions as a reservoir for the storage of small molecules (including polyphosphate, amino acids, several divalent cations (e.g. calcium), other ions, and other small molecules) as well as being the primary compartment for degradation. It is an acidic compartment, containing an ensemble of acid hydrolases. 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id: GO:0005625
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. That fraction of cells, prepared by disruptive biochemical methods, that is soluble in water.","definition_xrefs":["GOC:ma"],"gene_count":0,"genotype_count":0,"name":"obsolete soluble fraction (obsolete GO:0005625)","synonyms":[{"name":"soluble","type":"broad"},{"name":"soluble fraction","type":"exact"}],"termid":"GO:0005625"}


id: PBO:0030078
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_lysine_import_during_vegetative_growth","termid":"PBO:0030078"}


id: FYPO:0001179
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  {"alleles_by_uniquename":{"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"},"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[121596],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001132"},{"annotations":[121283],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"}],"single_locus_phenotype":[{"annotations":[121273,121280,121272,121284],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a protein does not localize to, and is therefore absent from, a place where it is normally found in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during vegetative growth","termid":"FYPO:0000443"},{"relation_name":"is_a","term_name":"abolished protein localization","termid":"FYPO:0001375"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01050":null,"SJAG_01143":null,"SJAG_01665":null,"SJAG_01745":null,"SJAG_02392":null,"SJAG_03596":null,"SJAG_03703":null,"SJAG_03892":null,"SJAG_04498":null},"genotype_count":3,"genotypes_by_uniquename":{"mid1delta":{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},"mid1delta__pom1delta":{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"nur1delta__vps4delta":{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_03892","SJAG_01143","SJAG_02392","SJAG_01050"],"name":"abolished protein localization during vegetative growth","references_by_uniquename":{"PMID:25866389":null,"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_01143"],"single_locus_genotype_uniquenames":["mid1delta"],"synonyms":[{"name":"abolished protein localisation during vegetative growth","type":"exact"},{"name":"abolished protein localization during mitotic cell cycle","type":"related"},{"name":"protein absent from specific location in cell during vegetative growth","type":"related"},{"name":"protein localization abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0001179","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0001132":null,"FYPO:0007177":null,"FYPO_EXT:0000001":null}}


id: PBO:0028048
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-long_cytoplasmic_interphase_microtubules","termid":"PBO:0028048"}


id: PBO:0086783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; SWAT-GFP fusion protein localizes to the cell periphery while mCherry fusion protein localizes to both the cell periphery and vacuole; YFL051C is not an essential gene","termid":"PBO:0086783"}


id: PBO:0048902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A6 family like 26","termid":"PBO:0048902"}


id: PBO:0058460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5189","termid":"PBO:0058460"}


id: MONDO:0014214
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An asphyxiating thoracic dystrophy that has material basis in compound heterozygous mutation in the WDR60 gene on chromosome 7q36.","definition_xrefs":["DOID:0110094","PMID:23910462"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"asphyxiating thoracic dystrophy 3","termid":"MONDO:0013127"},{"relation_name":"is_a","term_name":"Jeune syndrome","termid":"MONDO:0018770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"short-rib thoracic dysplasia 8 with or without polydactyly","secondary_identifiers":["GARD:15975","OMIM:615503","UMLS:C3809691","MEDGEN:816021"],"synonyms":[{"name":"SRPS6","type":"exact"},{"name":"SRTD8","type":"exact"},{"name":"short rib-polydactyly syndrome type VI","type":"exact"},{"name":"short rib-polydactyly syndrome, type 6","type":"related"},{"name":"short-rib thoracic dysplasia 8 with or without polydactyly","type":"exact"}],"termid":"MONDO:0014214","xrefs":{"Monarch":{"xref_id":"0014214"}}}


id: PBO:0041959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colon cancer associated transcript 1","termid":"PBO:0041959"}


id: PBO:0089198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial protein phosphatase Azr1","termid":"PBO:0089198"}


id: PBO:0087239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine hydrolase; exhibits active esterase plus weak triacylglycerol lipase activities; proposed role in lipid homeostasis, regulating phospholipid and non-polar lipid levels and required for mobilization of LD-stored lipids; localizes to the lipid droplet (LD) surface; contains a classical serine containing catalytic triad (GxSxG motif)","termid":"PBO:0087239"}


id: FYPO:0004820
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of DNA replication pause sites in ribosomal DNA at which the protein Rad52 (also called Rad22) accumulates is greater than normal.","definition_xrefs":["PomBase:mah","PMID:25417108"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased number of Rad52 foci during vegetative growth","termid":"FYPO:0000972"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased number of Rad52 foci at rDNA replication pause sites","synonyms":[{"name":"increased number of Rad22 foci at rDNA replication fork barrier","type":"exact"},{"name":"increased number of Rad22 foci at rDNA replication pause sites","type":"exact"},{"name":"increased number of Rad52 foci at rDNA replication pause sites during mitotic cell cycle","type":"related"},{"name":"increased number of Rad52 foci at rDNA replication pause sites during vegetative growth","type":"exact"}],"termid":"FYPO:0004820"}


id: FYPO:0005244
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing arabinose as the carbon source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0005447","FYPO:0001985","FYPO:0002057","FYPO:0000139","FYPO:0000003","FYPO:0002058"],"is_obsolete":false,"name":"decreased cell population growth on arabinose carbon source","synonyms":[{"name":"decreased growth on arabinose carbon source","type":"broad"},{"name":"decreased vegetative cell growth on arabinose carbon source","type":"exact"},{"name":"reduced cell growth on arabinose carbon source","type":"related"},{"name":"slow cell growth on arabinose carbon source","type":"narrow"}],"termid":"FYPO:0005244"}


id: MONDO:1012871
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hearing loss that occurs in dogs due to a mutation in the LOXHD1 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss disorder, non-human animal","termid":"MONDO:1012969"},{"relation_name":"is_a","term_name":"inherited auditory system disease, non-human animal","termid":"MONDO:1012970"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deafness, LOXHD1-related, dog","secondary_identifiers":["OMIA:002336-9615"],"synonyms":[{"name":"nonsyndromic hearing loss, dog","type":"related"}],"termid":"MONDO:1012871","xrefs":{"Monarch":{"xref_id":"1012871"}}}


id: PR:Q9UUE0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC17G9.12c gene.","definition_xrefs":["UniProtKB:Q9UUE0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0655 protein C17G9.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17G9.12c","synonyms":[{"name":"Spom972h-SPBC17G9.12c","type":"exact"}],"termid":"PR:Q9UUE0"}


id: GO:0042682
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that mediates the specification of a cell into a compound eye cone cell.","definition_xrefs":["GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell fate specification","termid":"GO:0042659"},{"relation_name":"regulates","term_name":"compound eye cone cell fate specification","termid":"GO:0042679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of compound eye cone cell fate specification","secondary_identifiers":["GO:0042681"],"termid":"GO:0042682"}


id: PBO:0045997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 1","termid":"PBO:0045997"}


id: PBO:0069983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1278, pseudogene","termid":"PBO:0069983"}


id: PBO:0078242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 22-1 (pseudogene)","termid":"PBO:0078242"}


id: MONDO:0016659
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"8p23.1 duplication syndrome is a rare chromosomal anomaly syndrome, resulting from the partial duplication of the short arm of chromosome 8, with a highly variable phenotype, principally characterized by mild to moderate developmental delay, intellectual disability, mild facial dysmorphism (incl. prominent forehead, arched eyebrows, broad nasal bridge, upturned nares, cleft lip and/or palate) and congenital cardiac anomalies (e.g., atrioventricular septal defect). Other reported features include macrocephaly, behavioral abnormalities (e.g., attention deficit disorder), seizures, hypotonia and ocular and digital anomalies (poly/syndactyly).","definition_xrefs":["Orphanet:251076"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial duplication of the short arm of chromosome 8","termid":"MONDO:0016945"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"8p23.1 duplication syndrome","secondary_identifiers":["GARD:10304","DECIPHER:85","SCTID:765140006","MEDGEN:1645138","UMLS:C4707330"],"synonyms":[{"name":"dup(8)(p23.1p23.1)","type":"exact"},{"name":"trisomy 8p23.1","type":"exact"}],"termid":"MONDO:0016659","xrefs":{"Monarch":{"xref_id":"0016659"}}}


id: PBO:0005593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT organizer Mto1","termid":"PBO:0005593"}


id: PBO:0001665
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Shwachman-Bodian-Diamond syndrome","termid":"PBO:0001665"}


id: GO:0021679
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the cerebellar molecular layer nerve over time, from its formation to the mature structure. The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells.","definition_xrefs":["ISBN:0838580343","GOC:cls","GOC:dgh","GO_REF:0000021","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"cerebellar cortex development","termid":"GO:0021695"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar molecular layer development","termid":"GO:0021679"}


id: MONDO:0000973
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign adipose tissue neoplasm of the external ear.","definition_xrefs":["NCIT:C4618"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipoma","termid":"MONDO:0005106"},{"relation_name":"is_a","term_name":"external ear neoplasm","termid":"MONDO:0021235"},{"relation_name":"is_a","term_name":"benign neoplasm of ear","termid":"MONDO:0021474"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"external ear lipoma","secondary_identifiers":["ICD9:215.0","DOID:10203","SCTID:188988008","UMLS:C0347423","MEDGEN:91130"],"synonyms":[{"name":"external Ear lipoma","type":"exact"},{"name":"external auditory meatus lipoma","type":"exact"},{"name":"external ear lipoma","type":"exact"},{"name":"lipoma of external Ear","type":"exact"},{"name":"lipoma of external auditory meatus","type":"exact"},{"name":"lipoma of external ear","type":"exact"},{"name":"lipoma of the external Ear","type":"exact"},{"name":"lipoma of the external auditory meatus","type":"exact"},{"name":"lipoma of the external ear","type":"exact"}],"termid":"MONDO:0000973","xrefs":{"Monarch":{"xref_id":"0000973"}}}


id: GO:0061431
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methionine stimulus.","definition_xrefs":["PMID:7891681","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to nutrient","termid":"GO:0031670"},{"relation_name":"is_a","term_name":"cellular response to amino acid stimulus","termid":"GO:0071230"},{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"},{"relation_name":"is_a","term_name":"response to methionine","termid":"GO:1904640"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to methionine","termid":"GO:0061431"}


id: GO:0102670
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,4',7-trihydroxyisoflavanone + S-adenosyl-L-methionine = H+ + 2,7-dihydroxy-4'-methoxyisoflavanone + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.212","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016741","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"2,7,4'-trihydroxyisoflavanone-4'-O-methyltransferase activity","secondary_identifiers":["RHEA:31371","MetaCyc:RXN-3624"],"termid":"GO:0102670"}


id: PBO:0046667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epithelial splicing regulatory protein 2","termid":"PBO:0046667"}


id: MONDO:0001763
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm involving the ethmoid sinus.","direct_ancestors":[{"relation_name":"is_a","term_name":"paranasal sinus carcinoma","termid":"MONDO:0000380"},{"relation_name":"is_a","term_name":"ethmoidal sinus neoplasm","termid":"MONDO:0001764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"ethmoid sinus cancer","secondary_identifiers":["SCTID:363426009","MEDGEN:102272","ICD9:160.3","DOID:1363","ICD10CM:C31.1","NCIT:C3541","UMLS:C0153477"],"synonyms":[{"name":"cancer of ethmoid sinus","type":"exact"},{"name":"ethmoid sinus cancer","type":"exact"},{"name":"malignant ethmoid sinus neoplasm","type":"exact"},{"name":"malignant ethmoid sinus tumor","type":"exact"},{"name":"malignant ethmoid sinus tumour","type":"exact"},{"name":"malignant ethmoidal sinus neoplasm","type":"exact"},{"name":"malignant ethmoidal sinus tumor","type":"exact"},{"name":"malignant ethmoidal sinus tumour","type":"exact"},{"name":"malignant neoplasm of ethmoid sinus","type":"exact"},{"name":"malignant neoplasm of ethmoidal sinus","type":"exact"},{"name":"malignant neoplasm of the ethmoid sinus","type":"exact"},{"name":"malignant neoplasm of the ethmoidal sinus","type":"exact"},{"name":"malignant tumor of ethmoid sinus","type":"exact"},{"name":"malignant tumor of ethmoidal sinus","type":"exact"},{"name":"malignant tumor of the ethmoid sinus","type":"exact"},{"name":"malignant tumor of the ethmoidal sinus","type":"exact"},{"name":"malignant tumour of ethmoid sinus","type":"exact"},{"name":"malignant tumour of ethmoidal sinus","type":"exact"},{"name":"malignant tumour of the ethmoid sinus","type":"exact"},{"name":"malignant tumour of the ethmoidal sinus","type":"exact"}],"termid":"MONDO:0001763","xrefs":{"Monarch":{"xref_id":"0001763"}}}


id: PBO:0041898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caveolae associated protein 3","termid":"PBO:0041898"}


id: SO:0000793
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000793 engineered_DNA (obsolete SO:0000793)","termid":"SO:0000793"}


id: FYPO:0004192
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to ionizing radiation is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"decreased RNA level during cellular response to ionizing radiation","synonyms":[{"name":"decreased RNA accumulation during cellular response to ionizing radiation","type":"related"},{"name":"decreased RNA level during cellular response to ionizing radiation during mitotic cell cycle","type":"related"},{"name":"decreased RNA level during cellular response to ionizing radiation during vegetative growth","type":"exact"},{"name":"decreased transcript level during cellular response to ionizing radiation","type":"exact"},{"name":"reduced RNA level during cellular response to ionizing radiation","type":"exact"}],"termid":"FYPO:0004192"}


id: PBO:0070564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 30","termid":"PBO:0070564"}


id: GO:0018702
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1,1-dichloro-2,2-bis(4-chlorophenyl)ethene + H+ + 2 e- = Cl- + 1-chloro-2,2-bis(4-chlorophenyl)ethene. 1,1-dichloro-2,2-bis(4-chlorophenyl)ethene is also known as DDE; 1-chloro-2,2-bis(4-chlorophenyl)ethene is also known as DDMU.","definition_xrefs":["UM-BBD_reactionID:r0440"],"gene_count":0,"genotype_count":0,"name":"obsolete 1,1-dichloro-2,2-bis(4-chlorophenyl)ethene dehalogenase activity (obsolete GO:0018702)","synonyms":[{"name":"1,1-dichloro-2,2-bis(4-chlorophenyl)ethylene dehalogenase activity","type":"exact"},{"name":"DDE dehalogenase activity","type":"exact"}],"termid":"GO:0018702"}


id: SO:0001782
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant located within a transcription factor binding site.","definition_xrefs":["EBI:fc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory_region_variant","termid":"SO:0001566"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TF_binding_site_variant","secondary_identifiers":["http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"Jannovar:tf_binding_site_variant","type":"exact"},{"name":"TF binding site variant","type":"exact"},{"name":"VEP:TF_binding_site_variant","type":"exact"}],"termid":"SO:0001782"}


id: PBO:0076230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUPT20H like 1","termid":"PBO:0076230"}


id: PBO:0062292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily M member 3","termid":"PBO:0062292"}


id: GO:0015977
data:
  {"annotated_genes":["SJAG_03920"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[118781],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019643"}]},"cv_name":"biological_process","definition":"A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).","definition_xrefs":["GOC:jl","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03920":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"carbon fixation","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Carbon_fixation"],"synonyms":[{"name":"autotrophic CO2 fixation","type":"exact"},{"name":"autotrophic CO2 fixation pathway","type":"exact"},{"name":"autotrophy","type":"exact"},{"name":"carbon dioxide fixation","type":"narrow"}],"termid":"GO:0015977","terms_by_termid":{"GO:0019643":null}}


id: PBO:0078058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 48","termid":"PBO:0078058"}


id: MONDO:0012011
data:
  {"annotated_genes":["SJAG_02218","SJAG_00210"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89169,89170],"is_not":false,"summary":null,"term":"MONDO:0012011"}]},"cv_name":"mondo","definition":"Any coronary artery disease in which the cause of the disease is a mutation in the MEF2A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coronary artery disorder","termid":"MONDO:0005010"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00210":null,"SJAG_02218":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"coronary artery disease, autosomal dominant, 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:608320","MEDGEN:330802","UMLS:C1842247","MESH:C564258"],"synonyms":[{"name":"ADCAD1","type":"related"},{"name":"MEF2A coronary artery disease","type":"exact"},{"name":"coronary artery disease caused by mutation in MEF2A","type":"exact"},{"name":"coronary artery disease with myocardial infarction","type":"related"},{"name":"coronary artery disease, autosomal dominant, 1","type":"exact"},{"name":"coronary artery disease, autosomal dominant, type 1","type":"exact"}],"termid":"MONDO:0012011","terms_by_termid":{"MONDO:0012011":null},"xrefs":{"Monarch":{"xref_id":"0012011"}}}


id: SO:0001225
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is silenced by histone modification.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"silenced_by_histone_modification","termid":"SO:0001221"},{"relation_name":"is_a","term_name":"silenced_gene","termid":"SO:0000127"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_silenced_by_histone_modification","synonyms":[{"name":"gene silenced by histone modification","type":"exact"}],"termid":"SO:0001225"}


id: MONDO:0002274
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease characterized by the presence of excessive amounts of paraprotein or single monoclonal gammaglobulin in the blood. It is usually due to an underlying immunoproliferative disorder or hematologic neoplasms, especially multiple myeloma.","definition_xrefs":["Wikipedia:Paraproteinemia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma protein metabolism disease","termid":"MONDO:0002273"},{"relation_name":"is_a","term_name":"monoclonal gammopathy","termid":"MONDO:0004960"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005570"],"is_obsolete":false,"name":"monoclonal paraproteinemia disease","secondary_identifiers":["SCTID:267440005","UMLS:C0026471","NCIT:C35878","DOID:2346","MEDGEN:10088","ICD9:273.1","HP:0031047"],"synonyms":[{"name":"monoclonal paraproteinaemia","type":"exact"},{"name":"monoclonal paraproteinemia","type":"exact"},{"name":"paraproteinaemia","type":"exact"}],"termid":"MONDO:0002274","xrefs":{"Monarch":{"xref_id":"0002274"}}}


id: FYPO:0004741
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount of filamentous actin (F-actin) in the actomyosin contractile ring is normal (i.e. indistinguishable from wild type) during mitotic anaphase B.","definition_xrefs":["PMID:25688133","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal actomyosin contractile ring","termid":"FYPO:0004740"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal F-actin level in actomyosin contractile ring during anaphase B","synonyms":[{"name":"normal F-actin level in actomyosin contractile ring during anaphase B during mitotic cell cycle","type":"related"},{"name":"normal F-actin level in actomyosin contractile ring during anaphase B during vegetative growth","type":"exact"},{"name":"normal F-actin level in contractile ring during anaphase B","type":"exact"},{"name":"normal F-actin level in cytokinetic contractile ring during anaphase B","type":"exact"},{"name":"normal abundance of actin in actomyosin contractile ring in anaphase B","type":"exact"},{"name":"normal actomyosin contractile ring F-actin level during anaphase B","type":"exact"},{"name":"normal filamentous actin level in actomyosin contractile ring during anaphase B","type":"exact"}],"termid":"FYPO:0004741"}


id: PBO:0085784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p); may participate in DNA replication; promoter contains SCB regulation box at -300 bp indicating that expression may be cell cycle-regulated; SIM1 has a paralog, SUN4, that arose from the whole genome duplication","termid":"PBO:0085784"}


id: GO:0010544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue.","definition_xrefs":["GOC:tb","GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of platelet activation","termid":"GO:0010543"},{"relation_name":"is_a","term_name":"negative regulation of blood coagulation","termid":"GO:0030195"},{"relation_name":"is_a","term_name":"negative regulation of cell activation","termid":"GO:0050866"},{"relation_name":"negatively_regulates","term_name":"platelet activation","termid":"GO:0030168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of platelet activation","termid":"GO:0010544"}


id: GO:0140113
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly and secretion of a set of components to form an extracellular microvesicule, a membrane-bounded vesicle that ranges in size 100 nm to 1 micron in size) and exits the cell by budding.","definition_xrefs":["PMID:28736435"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular vesicle biogenesis","termid":"GO:0140112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"extracellular microvesicle biogenesis","synonyms":[{"name":"extracellular microvesicle assembly","type":"related"}],"termid":"GO:0140113"}


id: PBO:0113443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase; K48-specific Ub chain binding receptor that assists Cdc48p in the dislocation of misfolded, polyubiquitinated ERAD substrates destined for proteasomal degradation; role in regulated destruction of ER membrane proteins, like HMG-CoA reductase (Hmg1/2p), cytosolic proteins (Fbp1p) and mislocalized proteins (Cse4p); mobilizes membrane-bound transcription factors by regulated Ub/proteasome-dependent processing; contains a UBX domain","termid":"PBO:0113443"}


id: SO:0001961
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A modified DNA cytosine base feature, modified by a formyl group at the 5 carbon.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_cytosine","termid":"SO:0001963"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5_formylcytosine","secondary_identifiers":["http:http\\://www.pacificbiosciences.com/pdf/WP_Detecting_DNA_Base_Modifications_Using_SMRT_Sequencing.pdf"],"synonyms":[{"name":"5-fC","type":"exact"},{"name":"5-formylcytosine","type":"exact"}],"termid":"SO:0001961"}


id: PBO:0108712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RabGEF, implicated in endosomal transport","termid":"PBO:0108712"}


id: GO:0080109
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: indole-3-acetonitrile + H2O = indole-3-acetamide.","definition_xrefs":["PMID:11607511","MetaCyc:RXN-7567","PMID:12430025"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrile hydratase activity","termid":"GO:0018822"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"indole-3-acetonitrile nitrile hydratase activity","secondary_identifiers":["KEGG_REACTION:R04020"],"termid":"GO:0080109"}


id: GO:0102525
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-argininium(1+) + 2-oxoglutarate + O2 = (3S)-3-hydroxy-L-arginine(1+) + succinate + carbon dioxide.","definition_xrefs":["GOC:pz","RHEA:36607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"2-oxoglutarate, L-arginine oxygenase (succinate-forming) activity","secondary_identifiers":["MetaCyc:RXN-14542","EC:1.14.11.41"],"termid":"GO:0102525"}


id: GO:0031451
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of slow-twitch skeletal muscle contraction.","definition_xrefs":["GOC:ef","GOC:mah","GOC:mtg_muscle","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of slow-twitch skeletal muscle fiber contraction","termid":"GO:0031449"},{"relation_name":"is_a","term_name":"positive regulation of striated muscle contraction","termid":"GO:0045989"},{"relation_name":"positively_regulates","term_name":"slow-twitch skeletal muscle fiber contraction","termid":"GO:0031444"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of slow-twitch skeletal muscle fiber contraction","synonyms":[{"name":"activation of slow-twitch skeletal muscle contraction","type":"narrow"},{"name":"positive regulation of slow-twitch skeletal muscle contraction","type":"exact"},{"name":"stimulation of slow-twitch skeletal muscle contraction","type":"narrow"},{"name":"up regulation of slow-twitch skeletal muscle contraction","type":"exact"},{"name":"up-regulation of slow-twitch skeletal muscle contraction","type":"exact"},{"name":"upregulation of slow-twitch skeletal muscle contraction","type":"exact"}],"termid":"GO:0031451"}


id: FYPO:0006808
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the degradation of messenger RNA (mRNA) molecules via the deadenylation-dependent pathway, which includes poly(A) tail shortening, is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene expression regulation phenotype during vegetative growth","termid":"FYPO:0001333"},{"relation_name":"is_a","term_name":"abnormal RNA catabolic process during vegetative growth","termid":"FYPO:0002136"},{"relation_name":"is_a","term_name":"abnormal gene expression","termid":"FYPO:0006551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0006551","FYPO:0000294","FYPO:0001320"],"is_obsolete":false,"name":"abnormal deadenylation-dependent decay","synonyms":[{"name":"abnormal deadenylation-dependent decay during mitotic cell cycle","type":"related"},{"name":"abnormal deadenylation-dependent decay during vegetative growth","type":"exact"},{"name":"abnormal nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay","type":"exact"}],"termid":"FYPO:0006808"}


id: PBO:0081661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF584 divergent transcript","termid":"PBO:0081661"}


id: GO:0097743
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A de novo centriole assembly process observed in multi-ciliated sperm cells of some primitive land plants, and where centrioles are formed from a blepharoplast, ultimately giving rise to multiple cilia on the sperm surface.","definition_xrefs":["GOC:cilia","PMID:25047614"],"direct_ancestors":[{"relation_name":"is_a","term_name":"de novo centriole assembly","termid":"GO:0097742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0000226"}],"interesting_parent_ids":["GO:0008150","GO:0000226","GO:0044085","GO:0007010"],"is_obsolete":false,"name":"de novo centriole assembly via blepharoplast","synonyms":[{"name":"multiciliation","type":"related"},{"name":"multiciliogenesis","type":"related"}],"termid":"GO:0097743"}


id: FYPO:0006787
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of poly(A)-specific ribonuclease activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal 3'-5'-exoribonuclease activity","termid":"FYPO:0002063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000654","FYPO:0000652","FYPO:0000661","FYPO:0000707"],"is_obsolete":false,"name":"abnormal poly(A)-specific ribonuclease activity","termid":"FYPO:0006787"}


id: GO:0044532
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process in which an organism modulates the frequency, rate or extent of apoptosis in a second organism.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation of apoptotic process in another organism (obsolete GO:0044532)","synonyms":[{"name":"modulation of apoptotic process in other organism","type":"exact"},{"name":"regulation of apoptotic process in other organism","type":"exact"}],"termid":"GO:0044532"}


id: GO:0070207
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a protein homotrimer, a macromolecular structure consisting of three noncovalently associated identical subunits.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein homooligomerization","termid":"GO:0051260"},{"relation_name":"is_a","term_name":"protein trimerization","termid":"GO:0070206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"protein homotrimerization","synonyms":[{"name":"protein homotrimer assembly","type":"exact"},{"name":"protein homotrimer biosynthesis","type":"exact"},{"name":"protein homotrimer biosynthetic process","type":"exact"},{"name":"protein homotrimer formation","type":"exact"}],"termid":"GO:0070207"}


id: GO:0003056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of vascular smooth muscle contraction.","definition_xrefs":["GOC:mtg_cardio","GOC:mtg_sensu","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of smooth muscle contraction","termid":"GO:0006940"},{"relation_name":"is_a","term_name":"regulation of vasoconstriction","termid":"GO:0019229"},{"relation_name":"regulates","term_name":"vascular associated smooth muscle contraction","termid":"GO:0014829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of vascular associated smooth muscle contraction","synonyms":[{"name":"regulation of vascular smooth muscle contraction","type":"exact"}],"termid":"GO:0003056"}


id: PBO:0076982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THADA armadillo repeat containing","termid":"PBO:0076982"}


id: PBO:0041482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 11 open reading frame 91","termid":"PBO:0041482"}


id: GO:0018160
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent binding of a pyrromethane (dipyrrin) cofactor to protein via the sulfur atom of cysteine forming dipyrrolylmethanemethyl-L-cysteine.","definition_xrefs":["RESID:AA0252"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-pyrromethane cofactor linkage","secondary_identifiers":["GO:0033035","GO:0018354"],"synonyms":[{"name":"dipyrromethane cofactor binding","type":"related"},{"name":"peptidyl-pyrromethane cofactor linkage via dipyrrolylmethanemethyl-L-cysteine","type":"exact"}],"termid":"GO:0018160"}


id: PBO:0066764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 62","termid":"PBO:0066764"}


id: PBO:0091883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleotide-sugar 4,6-dehydratase","termid":"PBO:0091883"}


id: PBO:0002245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase Fmp31 (predicted)","termid":"PBO:0002245"}


id: PBO:0050219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 36","termid":"PBO:0050219"}


id: GO:0051263
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of serine to N-[5-(6-O-seryl-beta-glucosyl)-2,3-dihydroxybenzoyl]-O-[N-(2,3-dihydroxybenzoyl)-O-[N-(2,3-dihydroxybenzoyl)seryl]seryl]serine as found in microcin E492 produced from the mceA gene in plasmid pJAM229 of the E. coli VCS257 strain and the K. pneumoniae RYC492 strain.","definition_xrefs":["RESID:AA0374"],"gene_count":0,"genotype_count":0,"name":"obsolete microcin E492 biosynthetic process by siderophore ester modification of peptidyl-serine (obsolete GO:0051263)","synonyms":[{"name":"microcin E492 anabolism by siderophore ester modification of peptidyl-serine","type":"exact"},{"name":"microcin E492 formation by siderophore ester modification of peptidyl-serine","type":"exact"},{"name":"microcin E492 synthesis by siderophore ester modification of peptidyl-serine","type":"exact"}],"termid":"GO:0051263"}


id: PR:O74525
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC70.04c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C70.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC70.04c","synonyms":[{"name":"Spom972h-SPCC70.04c","type":"exact"}],"termid":"PR:O74525"}


id: GO:0140048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of manganese ions from inside of a cell, across the plasma membrane and into the extracellular region.","definition_xrefs":["PMID:25319704"],"direct_ancestors":[{"relation_name":"is_a","term_name":"manganese ion transmembrane transport","termid":"GO:0071421"},{"relation_name":"is_a","term_name":"export across plasma membrane","termid":"GO:0140115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0051179","GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"manganese ion export across plasma membrane","synonyms":[{"name":"manganese ion export from cell","type":"exact"}],"termid":"GO:0140048"}


id: PBO:0108942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL7L1 pseudogene 21","termid":"PBO:0108942"}


id: PBO:0066564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhomboid domain containing 3","termid":"PBO:0066564"}


id: PBO:0058598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6730","termid":"PBO:0058598"}


id: GO:1903921
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein processing in phagocytic vesicle.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:als","PMID:23325791"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein processing","termid":"GO:0070613"},{"relation_name":"regulates","term_name":"protein processing in phagocytic vesicle","termid":"GO:1900756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0051604"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0051604","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of protein processing in phagocytic vesicle","synonyms":[{"name":"regulation of peptidolysis during protein maturation in phagocytic vesicle","type":"related"},{"name":"regulation of peptidolysis during protein maturation in phagosome","type":"related"},{"name":"regulation of protein maturation by peptide bond cleavage in phagocytic vesicle","type":"exact"},{"name":"regulation of protein maturation by peptide bond cleavage in phagosome","type":"exact"},{"name":"regulation of protein maturation by peptide bond hydrolysis in phagocytic vesicle","type":"exact"},{"name":"regulation of protein maturation by peptide bond hydrolysis in phagosome","type":"exact"},{"name":"regulation of protein maturation by proteolysis in phagocytic vesicle","type":"related"},{"name":"regulation of protein maturation by proteolysis in phagosome","type":"related"},{"name":"regulation of protein processing in phagosome","type":"exact"}],"termid":"GO:1903921"}


id: PBO:0046056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 3 subunit G","termid":"PBO:0046056"}


id: PBO:0054017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1347","termid":"PBO:0054017"}


