# terms

id: PBO:0058165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR4458 host gene","termid":"PBO:0058165"}


id: GO:0047740
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (7R)-7-(5-carboxylato-5-oxopentanamido)deacetylcephalosporanate + D-glutamate = 2-oxoglutarate + cephalosporin C.","definition_xrefs":["EC:2.6.1.74","RHEA:14553"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016769"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016769"],"is_obsolete":false,"name":"cephalosporin-C transaminase activity","secondary_identifiers":["KEGG_REACTION:R03063","MetaCyc:CEPHALOSPORIN-C-TRANSAMINASE-RXN"],"synonyms":[{"name":"L-alanine:cephalosporin-C aminotransferase activity","type":"related"},{"name":"cephalosporin C aminotransferase activity","type":"related"},{"name":"cephalosporin-C:2-oxoglutarate aminotransferase activity","type":"related"}],"termid":"GO:0047740"}


id: MONDO:0025510
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A granulomatous disease caused by the aquatic organism pythium insidiosum and occurring primarily in horses, cattle, dogs, cats, and fishes. It is classified into three forms: ocular, cutaneous, and arterial.","definition_xrefs":["MESH:D058968"],"direct_ancestors":[{"relation_name":"is_a","term_name":"infectious disease, non-human animal","termid":"MONDO:0700049"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pythiosis, non-human animal","termid":"MONDO:0025510","xrefs":{"Monarch":{"xref_id":"0025510"}}}


id: PBO:0110424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TVP23B pseudogene 3","termid":"PBO:0110424"}


id: PBO:0003231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin-8 family","termid":"PBO:0003231"}


id: PBO:0002616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial outer membrane voltage-dependent anion-selective channel (predicted)","termid":"PBO:0002616"}


id: PATO:0001845
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A rhythm quality inhering in a bearer by virtue of the bearer's lacking rhythm lacking pattern.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhythm quality","termid":"PATO:0000078"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"irregular rhythm","termid":"PATO:0001845"}


id: MONDO:0015998
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Isolated ectopia lentis (IEL) is a rare, clinically variable, eye disorder characterized by dislocation of the lens, often causing significant reduction in visual acuity.","definition_xrefs":["Orphanet:1885"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"Marfan and Marfan-related disorder","termid":"MONDO:0017310"},{"relation_name":"is_a","term_name":"lens disorder","termid":"MONDO:0001176"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"isolated ectopia lentis","secondary_identifiers":["DOID:0111148","PMID:20141359","SCTID:74969002","UMLS:C1851286","MedDRA:10014145","MESH:C536184","NCIT:C34566","GARD:12251","MEDGEN:342716"],"synonyms":[{"name":"IEL","type":"exact"},{"name":"congenital ectopic lens","type":"related"},{"name":"ectopia lentis syndrome","type":"exact"},{"name":"familial ectopia lentis","type":"exact"},{"name":"isolated lens position anomaly","type":"exact"},{"name":"nonsyndromic lens position anomaly","type":"exact"}],"termid":"MONDO:0015998","xrefs":{"Monarch":{"xref_id":"0015998"}}}


id: GO:0042337
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The synthesis and deposition of a chitin-based non-cellular, hardened, or membranous secretion from an epithelial sheet, occurring as part of the molting cycle. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:jl","GOC:dph","GOC:mtg_sensu","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chitin-based cuticle development","termid":"GO:0040003"},{"relation_name":"part_of","term_name":"molting cycle, chitin-based cuticle","termid":"GO:0007591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cuticle development involved in chitin-based cuticle molting cycle","synonyms":[{"name":"chitin-based cuticle development during molting","type":"related"},{"name":"cuticle anabolism during molting","type":"broad"},{"name":"cuticle biosynthetic process during molting","type":"broad"},{"name":"cuticle formation during molting","type":"broad"},{"name":"cuticle synthesis during molting","type":"broad"}],"termid":"GO:0042337"}


id: MONDO:0017221
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The connatal form of Pelizaeus-Merzbacher disease (PMD) is the most severe form of PMD.","definition_xrefs":["Orphanet:280210"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Pelizeaus-Merzbacher spectrum disorder","termid":"MONDO:0010714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"Pelizaeus-Merzbacher disease, connatal form","secondary_identifiers":["MEDGEN:1842817","GARD:17291","icd11.foundation:1118374715","UMLS:C5679776"],"synonyms":[{"name":"Pelizaeus-Merzbacher disease type II","type":"exact"},{"name":"connatal PMD","type":"exact"},{"name":"severe PMD","type":"exact"}],"termid":"MONDO:0017221","xrefs":{"Monarch":{"xref_id":"0017221"}}}


id: PBO:0113493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor required for the mating response; subunit of the mRNA m6A methyltransferase (MIS) complex, regulating meiosis at multiple steps, early prior to pre-meiotic S phase and late during the completion of meiosis and sporulation; exists in two forms, a slower-migrating form abundant during vegetative growth and a faster-migrating pheromone-induced form; null mutant exhibits abnormal lipid metabolic phenotype; homologous to human METTL14, a subunit of a m6A methyltransferase complex","termid":"PBO:0113493"}


id: FYPO:0005079
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at the central core of the centromeric regions is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:21151114","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin during vegetative growth","termid":"FYPO:0001509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to chromatin at centromere central core","synonyms":[{"name":"normal protein localisation to chromatin at centromere central core","type":"exact"},{"name":"normal protein localization to chromatin at centromere central core during mitotic cell cycle","type":"related"},{"name":"normal protein localization to chromatin at centromere central core during vegetative growth","type":"exact"},{"name":"normal protein localization to chromatin at centromeric central core","type":"exact"}],"termid":"FYPO:0005079"}


id: PR:G2TRU5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cmc2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRU5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COX assembly mitochondrial protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4B3.20","synonyms":[{"name":"Cx9C motif-containing protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cmc2","type":"exact"}],"termid":"PR:G2TRU5"}


id: MONDO:0001136
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"testicular disorder","termid":"MONDO:0002329"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chylocele of tunica vaginalis","secondary_identifiers":["MEDGEN:510239","SCTID:7864001","UMLS:C0156315","DOID:10835","ICD9:608.84"],"termid":"MONDO:0001136","xrefs":{"Monarch":{"xref_id":"0001136"}}}


id: PBO:0063868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class A pseudogene 1","termid":"PBO:0063868"}


id: GO:2000499
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of induction of apoptosis in response to chemical stimulus.","definition_xrefs":["GOC:obol","GOC:mtg_apoptosis"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of induction of apoptosis in response to chemical stimulus (obsolete GO:2000499)","synonyms":[{"name":"negative regulation of induction of apoptosis in response to chemical stimulus","type":"exact"},{"name":"negative regulation of induction of apoptosis in response to chemical substance","type":"exact"}],"termid":"GO:2000499"}


id: PBO:0053147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactate dehydrogenase A pseudogene 3","termid":"PBO:0053147"}


id: PBO:0057324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 519d","termid":"PBO:0057324"}


id: PBO:0063072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"papilin, proteoglycan like sulfated glycoprotein","termid":"PBO:0063072"}


id: GO:0061889
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of astrocyte activation.","definition_xrefs":["PMID:20005821","GOC:bc","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of astrocyte differentiation","termid":"GO:0048712"},{"relation_name":"is_a","term_name":"negative regulation of cell activation","termid":"GO:0050866"},{"relation_name":"is_a","term_name":"regulation of astrocyte activation","termid":"GO:0061888"},{"relation_name":"is_a","term_name":"negative regulation of neuroinflammatory response","termid":"GO:0150079"},{"relation_name":"negatively_regulates","term_name":"astrocyte activation","termid":"GO:0048143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of astrocyte activation","termid":"GO:0061889"}


id: GO:0090502
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA phosphodiester bond hydrolysis, endonucleolytic (obsolete GO:0090502)","termid":"GO:0090502"}


id: PBO:0054666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2072","termid":"PBO:0054666"}


id: PBO:0005842
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.4.9","termid":"PBO:0005842"}


id: GO:1900202
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of spread of virus in host, cell to cell.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of spread of virus in host, cell to cell (obsolete GO:1900202)","synonyms":[{"name":"down regulation of cell to cell spread of virus within host","type":"exact"},{"name":"down regulation of spread of virus in host, cell to cell","type":"exact"},{"name":"down regulation of spread of virus within host, cell to cell","type":"exact"},{"name":"down regulation of viral spread within host, cell to cell","type":"exact"},{"name":"down-regulation of cell to cell spread of virus within host","type":"exact"},{"name":"down-regulation of spread of virus in host, cell to cell","type":"exact"},{"name":"down-regulation of spread of virus within host, cell to cell","type":"exact"},{"name":"down-regulation of viral spread within host, cell to cell","type":"exact"},{"name":"downregulation of cell to cell spread of virus within host","type":"exact"},{"name":"downregulation of spread of virus in host, cell to cell","type":"exact"},{"name":"downregulation of spread of virus within host, cell to cell","type":"exact"},{"name":"downregulation of viral spread within host, cell to cell","type":"exact"},{"name":"inhibition of cell to cell spread of virus within host","type":"exact"},{"name":"inhibition of spread of virus in host, cell to cell","type":"narrow"},{"name":"inhibition of spread of virus within host, cell to cell","type":"exact"},{"name":"inhibition of viral spread within host, cell to cell","type":"exact"},{"name":"negative regulation of cell to cell spread of virus within host","type":"exact"},{"name":"negative regulation of spread of virus in host, cell to cell","type":"exact"},{"name":"negative regulation of spread of virus within host, cell to cell","type":"exact"},{"name":"negative regulation of viral spread within host, cell to cell","type":"exact"}],"termid":"GO:1900202"}


id: MONDO:0001469
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"stomach disorder","termid":"MONDO:0004298"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"cascade stomach","secondary_identifiers":["DOID:12234","ICD9:537.6","MEDGEN:540460","SCTID:54051005","UMLS:C0267183"],"synonyms":[{"name":"hourglass stricture or stenosis of stomach","type":"exact"}],"termid":"MONDO:0001469","xrefs":{"Monarch":{"xref_id":"0001469"}}}


id: GO:0019607
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of phenylethylamine, an amine with pharmacological properties similar to those of amphetamine, occurs naturally as a neurotransmitter in the brain, and is present in chocolate and oil of bitter almonds.","definition_xrefs":["GOC:jl","ISBN:0395825172"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biogenic amine catabolic process","termid":"GO:0042402"},{"relation_name":"is_a","term_name":"phenylethylamine metabolic process","termid":"GO:0042443"},{"relation_name":"is_a","term_name":"primary amino compound catabolic process","termid":"GO:1901161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phenylethylamine catabolic process","secondary_identifiers":["MetaCyc:2PHENDEG-PWY"],"synonyms":[{"name":"phenylethylamine breakdown","type":"exact"},{"name":"phenylethylamine catabolism","type":"exact"},{"name":"phenylethylamine degradation","type":"exact"}],"termid":"GO:0019607"}


id: PBO:0003411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin Nup131","termid":"PBO:0003411"}


id: MONDO:1012328
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cutaneous and renal vasculopathy, non-human animal","termid":"MONDO:1011744"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cutaneous and renal vasculopathy, dog","secondary_identifiers":["OMIA:001220-9615"],"termid":"MONDO:1012328","xrefs":{"Monarch":{"xref_id":"1012328"}}}


id: GO:0006562
data:
  {"annotated_genes":["SJAG_02235","SJAG_01903"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72012,79913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010133"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proline metabolic process","termid":"GO:0006560"},{"relation_name":"is_a","term_name":"glutamine family amino acid catabolic process","termid":"GO:0009065"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01903":null,"SJAG_02235":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"L-proline catabolic process","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-70688"],"synonyms":[{"name":"proline breakdown","type":"exact"},{"name":"proline catabolism","type":"exact"},{"name":"proline degradation","type":"exact"}],"termid":"GO:0006562","terms_by_termid":{"GO:0010133":null}}


id: PBO:0082873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cortical ER protein involved in ER-plasma membrane tethering; one of 6 proteins (Ist2p, Scs2p, Scs22p, Tcb1p, Tcb2p, Tcb3p) that connect ER to the plasma membrane (PM) and regulate PM phosphatidylinositol-4-phosphate (PI4P) levels by controlling access of Sac1p phosphatase to its substrate PI4P in the PM; localized to the bud via specific mRNA transport; non-tagged protein detected in a phosphorylated state in mitochondria; C-termini of Tcb1p, Tcb2p and Tcb3p interact","termid":"PBO:0082873"}


id: GO:0051378
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to serotonin (5-hydroxytryptamine), a monoamine neurotransmitter occurring in the peripheral and central nervous systems, also having hormonal properties.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cation binding","termid":"GO:0043169"},{"relation_name":"is_a","term_name":"amine binding","termid":"GO:0043176"},{"relation_name":"is_a","term_name":"heterocyclic compound binding","termid":"GO:1901363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"serotonin binding","synonyms":[{"name":"5-hydroxytryptamine binding","type":"exact"}],"termid":"GO:0051378"}


id: PBO:0042141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine ligand 3 like 1","termid":"PBO:0042141"}


id: PBO:0029995
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_septation_index","termid":"PBO:0029995"}


id: GO:0035816
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process where water is taken up from the collecting ducts and proximal and distal loops of the nephron, which acts to decrease the amount of urine that is excreted from the body per unit time.","definition_xrefs":["GOC:mtg_25march11","GOC:yaf"],"gene_count":0,"genotype_count":0,"name":"obsolete renal water absorption involved in negative regulation of urine volume (obsolete GO:0035816)","termid":"GO:0035816"}


id: PBO:0002286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein methyltransferase Mtq2 (predicted)","termid":"PBO:0002286"}


id: PBO:0034453
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_glutamate_dehydrogenase_(NADP+)_activity","termid":"PBO:0034453"}


id: PBO:0061645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUDT19 pseudogene 3","termid":"PBO:0061645"}


id: GO:0140602
data:
  {"annotated_genes":["SJAG_00082","SJAG_04187","SJAG_01805","SJAG_00302","SJAG_03161","SJAG_00178","SJAG_00436","SJAG_01186","SJAG_03300","SJAG_00335","SJAG_03048","SJAG_04140","SJAG_01374","SJAG_03543","SJAG_04601","SJAG_01837","SJAG_03745","SJAG_00471","SJAG_04855","SJAG_04055","SJAG_04768","SJAG_04645","SJAG_01408"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[60640,89351,90873,91869,92832,94128,95687,100962,104217,104300,106154,106248,106959,107345,107710,113193,114050,114605,114606,114607,116912,117512,118689],"is_not":false,"summary":null,"term":"GO:0140602"}]},"cv_name":"cellular_component","definition":"Inclusion bodies located at the nucleolar periphery where several nuclear factors are reversibly aggregated and sequestered during acute heat stress or starvation.","definition_xrefs":["PMID:33176152","PMID:37128864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear inclusion body","termid":"GO:0042405"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00178":null,"SJAG_00302":null,"SJAG_00335":null,"SJAG_00436":null,"SJAG_00471":null,"SJAG_01186":null,"SJAG_01374":null,"SJAG_01408":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_03048":null,"SJAG_03161":null,"SJAG_03300":null,"SJAG_03543":null,"SJAG_03745":null,"SJAG_04055":null,"SJAG_04140":null,"SJAG_04187":null,"SJAG_04601":null,"SJAG_04645":null,"SJAG_04768":null,"SJAG_04855":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634"],"is_obsolete":false,"name":"nucleolar peripheral inclusion body","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"NuRs","type":"exact"},{"name":"nucleolar rings","type":"exact"}],"termid":"GO:0140602","terms_by_termid":{"GO:0140602":null}}


id: GO:0004797
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + thymidine = ADP + thymidine 5'-phosphate.","definition_xrefs":["EC:2.7.1.21"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxynucleoside kinase activity","termid":"GO:0019136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016301","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"thymidine kinase activity","secondary_identifiers":["MetaCyc:THYKI-RXN","RHEA:19129"],"synonyms":[{"name":"2'-deoxythymidine kinase activity","type":"related"},{"name":"ATP:thymidine 5'-phosphotransferase activity","type":"related"},{"name":"deoxythymidine kinase (phosphorylating)","type":"related"},{"name":"thymidine kinase (phosphorylating)","type":"related"}],"termid":"GO:0004797"}


id: _global:causally_upstream_of,_negative_effect
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q.","direct_ancestors":[{"relation_name":"is_a","term_name":"causally_upstream_of","termid":"_global:causally_upstream_of"},{"relation_name":"is_a","term_name":"causally_upstream_of_or_within,_negative_effect","termid":"_global:causally_upstream_of_or_within,_negative_effect"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"causally_upstream_of,_negative_effect","secondary_identifiers":["RO:0002305"],"termid":"_global:causally_upstream_of,_negative_effect"}


id: PBO:0088646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinol-cytochrome-c reductase complex core protein Qcr2","termid":"PBO:0088646"}


id: PBO:0031452
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_nuclear_pore_distribution","termid":"PBO:0031452"}


id: PBO:0067706
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal 4","termid":"PBO:0067706"}


id: PBO:0062261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily D member 17 pseudogene","termid":"PBO:0062261"}


id: MONDO:0001331
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"conjunctival disorder","termid":"MONDO:0006170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"conjunctival deposit","secondary_identifiers":["DOID:11653","ICD9:372.56","SCTID:62660000","MEDGEN:511536","UMLS:C0162280"],"termid":"MONDO:0001331","xrefs":{"Monarch":{"xref_id":"0001331"}}}


id: PBO:0067936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 238","termid":"PBO:0067936"}


id: PBO:0085772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein localized to COPII-coated vesicles; forms a complex with Erv46p; involved in the membrane fusion stage of transport; has homology to human ERGIC2 (PTX1) protein","termid":"PBO:0085772"}


id: GO:0009896
data:
  {"annotated_genes":["SJAG_04818","SJAG_02808","SJAG_01910","SJAG_02433","SJAG_01210","SJAG_04118","SJAG_04153","SJAG_00642","SJAG_00766","SJAG_01625","SJAG_02036","SJAG_00712","SJAG_04990","SJAG_04350","SJAG_04496","SJAG_16457","SJAG_00169","SJAG_01818","SJAG_02765","SJAG_00824","SJAG_04477","SJAG_01544","SJAG_00966","SJAG_03851","SJAG_02540","SJAG_05346","SJAG_00854","SJAG_04407","SJAG_03048","SJAG_01716","SJAG_00391","SJAG_01053","SJAG_00285","SJAG_04682","SJAG_01131","SJAG_05694","SJAG_01191","SJAG_01436","SJAG_03699","SJAG_02370","SJAG_04321","SJAG_03597","SJAG_04006","SJAG_04084","SJAG_05322","SJAG_02622","SJAG_00759","SJAG_01184","SJAG_04824","SJAG_01944","SJAG_03876","SJAG_04502","SJAG_04880","SJAG_01489","SJAG_05010","SJAG_03745","SJAG_01521","SJAG_01696","SJAG_00071","SJAG_05000","SJAG_02723","SJAG_02383","SJAG_04435","SJAG_05289","SJAG_03179","SJAG_00343","SJAG_03157","SJAG_00704","SJAG_03113","SJAG_04825","SJAG_04249","SJAG_00686","SJAG_02213","SJAG_02239","SJAG_03883"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[120362],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061158"},{"annotations":[77577,79351,58789,76176,81411,114007],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000290"},{"annotations":[120149],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061157"},{"annotations":[93565],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0060212"},{"annotations":[94138,97828,108440,117907,94969,107226,117467,99165,104027,106356,109433,120350],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071042"},{"annotations":[101864,100065,60378,72354,78394,99978,117166,81436],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000288"},{"annotations":[91667,94491,80587,71999,77257,81539,79493,96230,118629,92665,75447,94394,97421,117682],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000289"},{"annotations":[93566],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0036450"},{"annotations":[67856,92666,119259],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990074"},{"annotations":[90821],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905786"},{"annotations":[110639,110546],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000786"},{"annotations":[99548],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901098"},{"annotations":[75418,113843,75311,81717,100803,101371,111666,116597],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010508"},{"annotations":[70570],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903599"},{"annotations":[108231,77167],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016239"},{"annotations":[108629],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120272"},{"annotations":[106881,74499,91578],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060213"},{"annotations":[70350,66674,62199,68345,69836,68852],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901800"},{"annotations":[110882,108630,104330,113715,119102],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032436"},{"annotations":[101321],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904352"},{"annotations":[91402],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140501"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of metabolic process","termid":"GO:0009893"},{"relation_name":"is_a","term_name":"regulation of catabolic process","termid":"GO:0009894"},{"relation_name":"positively_regulates","term_name":"catabolic 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regulation of catabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"activation of catabolic process","type":"narrow"},{"name":"positive regulation of breakdown","type":"exact"},{"name":"positive regulation of catabolism","type":"exact"},{"name":"positive regulation of degradation","type":"exact"},{"name":"stimulation of catabolic process","type":"narrow"},{"name":"up regulation of catabolic process","type":"exact"},{"name":"up-regulation of catabolic process","type":"exact"},{"name":"upregulation of catabolic process","type":"exact"}],"termid":"GO:0009896","terms_by_termid":{"GO:0000288":null,"GO:0000289":null,"GO:0000290":null,"GO:0010508":null,"GO:0016239":null,"GO:0032436":null,"GO:0036450":null,"GO:0060212":null,"GO:0060213":null,"GO:0061157":null,"GO:0061158":null,"GO:0071042":null,"GO:0120272":null,"GO:0140501":null,"GO:1901098":null,"GO:1901800":null,"GO:1903599":null,"GO:1904352":null,"GO:1905786":null,"GO:1990074":null,"GO:2000786":null}}


id: PBO:0068852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 90, pseudogene","termid":"PBO:0068852"}


id: GO:0075179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont organism stops, prevents, or reduces the frequency, rate or extent of its symbiont calcium or calmodulin-mediated signal transduction as a result of detecting host molecules in, on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of calcium or calmodulin-mediated signal transduction in response to host (obsolete GO:0075179)","synonyms":[{"name":"negative regulation of symbiont Ca++ or calmodulin-mediated signal transduction in response to host","type":"exact"},{"name":"negative regulation of symbiont calcium or calmodulin-mediated signal transduction in response to host","type":"exact"}],"termid":"GO:0075179"}


id: GO:0120501
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-methionyl-[F-actin] + NADPH + O2 + H+ = L-methionyl-(R)-S-oxide-[F-actin] + NADP+ + H2O.","definition_xrefs":["RHEA:51308"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"F-actin monooxygenase activity","secondary_identifiers":["EC:1.14.13.225"],"termid":"GO:0120501"}


id: PBO:0067089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 125, pseudogene","termid":"PBO:0067089"}


id: PBO:0050752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family E (Hsp10) member 1 pseudogene 14","termid":"PBO:0050752"}


id: GO:2000077
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of pancreatic B cell development.","definition_xrefs":["GOC:obol","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell development","termid":"GO:0010721"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of type B pancreatic cell development","termid":"GO:2000074"},{"relation_name":"negatively_regulates","term_name":"type B pancreatic cell development","termid":"GO:0003323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of type B pancreatic cell development","synonyms":[{"name":"negative regulation of pancreatic B cell development","type":"exact"},{"name":"negative regulation of pancreatic beta cell development","type":"exact"}],"termid":"GO:2000077"}


id: PBO:0087535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of PPCDC and CoA-SPC complexes involved in CoA biosynthesis; subunits of the phosphopantothenoylcysteine decarboxylase (PPCDC) complex are: Cab3p, Sis2p, Vhs3p, while the subunits of the CoA-synthesizing protein complex (CoA-SPC) are: Cab2p, Cab3p, Cab4p, and Cab5p as well as Sis2p and Vhs3p; null mutant lethality is complemented by E. coli coaBC","termid":"PBO:0087535"}


id: PBO:0017902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trifunctional dihydropteroatesynthase/2-amino-4-hydroxy-6-hydro xymethyldihydropteridinediphosphokinase/dihydroneopterin aldolase Fol1 (predicted)","termid":"PBO:0017902"}


id: GO:0047546
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-hydroxypyridine + AH(2) + O2 = 2,5-dihydroxypyridine + A + H2O.","definition_xrefs":["RHEA:16973","EC:1.14.99.26"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"2-hydroxypyridine 5-monooxygenase activity","secondary_identifiers":["MetaCyc:2-HYDROXYPYRIDINE-5-MONOOXYGENASE-RXN","KEGG_REACTION:R03206"],"synonyms":[{"name":"2-hydroxypyridine oxygenase activity","type":"related"},{"name":"2-hydroxypyridine,hydrogen-donor:oxygen oxidoreductase (5-hydroxylating)","type":"related"}],"termid":"GO:0047546"}


id: FYPO:0004955
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of phosphatidylinositol-3-phosphate binding by a gene product (usually a protein) in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased phosphatidylinositol binding","termid":"FYPO:0008328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"decreased phosphatidylinositol-3-phosphate binding","synonyms":[{"name":"decreased PtdIns-3-P binding","type":"exact"},{"name":"decreased phosphatidylinositol 3-phosphate binding","type":"exact"},{"name":"reduced phosphatidylinositol-3-phosphate binding","type":"exact"}],"termid":"FYPO:0004955"}


id: PBO:0036154
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_replication_fork_pausing_at_tRNA_genes","termid":"PBO:0036154"}


id: SO:0001869
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A candidate gene whose function has something in common biologically with the trait under investigation.","definition_xrefs":["GMOD:ea"],"direct_ancestors":[{"relation_name":"is_a","term_name":"candidate_gene","termid":"SO:0001867"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functional_candidate_gene","synonyms":[{"name":"functional candidate gene","type":"exact"},{"name":"functional target gene","type":"exact"}],"termid":"SO:0001869"}


id: GO:0033262
data:
  {"annotated_genes":["SJAG_03048","SJAG_01068","SJAG_03720","SJAG_01210","SJAG_03438","SJAG_02074","SJAG_02162","SJAG_03695","SJAG_03160","SJAG_00364"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[118874],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903464"},{"annotations":[99698,104316,110881],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903467"},{"annotations":[105271,119307,114042],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903468"},{"annotations":[108593,118255,90938,104322],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904514"},{"annotations":[104326],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903465"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of The DNA-dependent DNA replication that occurs in the nucleus of eukaryotic organisms as part of the cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"is_a","term_name":"regulation of DNA-templated DNA replication","termid":"GO:0090329"},{"relation_name":"regulates","term_name":"nuclear DNA replication","termid":"GO:0033260"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_01068":null,"SJAG_01210":null,"SJAG_02074":null,"SJAG_02162":null,"SJAG_03048":null,"SJAG_03160":null,"SJAG_03438":null,"SJAG_03695":null,"SJAG_03720":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0007049","GO:0006260"],"is_obsolete":false,"name":"regulation of nuclear cell cycle DNA replication","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of DNA replication during S phase","type":"related"},{"name":"regulation of DNA replication involved in S phase","type":"exact"},{"name":"regulation of DNA replication involved in S-phase","type":"exact"}],"termid":"GO:0033262","terms_by_termid":{"GO:1903464":null,"GO:1903465":null,"GO:1903467":null,"GO:1903468":null,"GO:1904514":null}}


id: PBO:0028488
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_mitotic_index","termid":"PBO:0028488"}


id: GO:0000439
data:
  {"annotated_genes":["SJAG_04368","SJAG_01207","SJAG_00901","SJAG_00995","SJAG_00758","SJAG_00512","SJAG_03206"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[57398,63119,71893,77939,80506,92135,94062],"is_not":false,"summary":null,"term":"GO:0000439"}]},"cv_name":"cellular_component","definition":"The 7 subunit core of TFIIH that is a part of either the general transcription factor holo-TFIIH or the nucleotide-excision repair factor 3 complex. In S. cerevisiae/humans the complex is composed of: Ssl2/XPB, Tfb1/p62, Tfb2/p52, Ssl1/p44, Tfb4/p34, Tfb5/p8 and Rad3/XPD.","definition_xrefs":["PMID:14500720","PMID:17215295","PMID:22572993","GOC:krc","PMID:23028141","PMID:22308316","GOC:ew","PMID:7813015"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulator complex","termid":"GO:0090575"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00512":null,"SJAG_00758":null,"SJAG_00901":null,"SJAG_00995":null,"SJAG_01207":null,"SJAG_03206":null,"SJAG_04368":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"transcription factor TFIIH core complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0000441"],"synonyms":[{"name":"SSL2-core TFIIH complex","type":"exact"},{"name":"core TFIIH complex","type":"exact"}],"termid":"GO:0000439","terms_by_termid":{"GO:0000439":null}}


id: MONDO:0030067
data:
  {"annotated_genes":["SJAG_03578"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87190],"is_not":false,"summary":null,"term":"MONDO:0030067"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Treacher-Collins syndrome","termid":"MONDO:0002457"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03578":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"Treacher Collins syndrome 4","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0080792","MEDGEN:1712280","GARD:16396","UMLS:C5394546","OMIM:618939"],"synonyms":[{"name":"TCS4","type":"exact"},{"name":"TREACHER COLLINS SYNDROME 4","type":"exact"},{"name":"Treacher-Collins syndrome 4","type":"exact"},{"name":"treacher collins syndrome 4","type":"exact"}],"termid":"MONDO:0030067","terms_by_termid":{"MONDO:0030067":null},"xrefs":{"Monarch":{"xref_id":"0030067"}}}


id: GO:0098630
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The clustering together of unicellular organisms in suspension form aggregates.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell aggregation","termid":"GO:0098743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aggregation of unicellular organisms","synonyms":[{"name":"aggregation of single cell organisms","type":"exact"}],"termid":"GO:0098630"}


id: PBO:0109039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IFT57 pseudogene 1","termid":"PBO:0109039"}


id: GO:0018101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The hydrolysis of peptidyl-arginine to form peptidyl-citrulline.","definition_xrefs":["PMID:23175390","RESID:AA0214"],"gene_count":0,"genotype_count":0,"name":"obsolete protein citrullination (obsolete GO:0018101)","synonyms":[{"name":"deimination","type":"exact"},{"name":"peptidyl-citrulline anabolism from peptidyl-arginine","type":"exact"},{"name":"peptidyl-citrulline biosynthetic process from peptidyl-arginine","type":"exact"},{"name":"peptidyl-citrulline formation from peptidyl-arginine","type":"exact"},{"name":"peptidyl-citrulline synthesis from peptidyl-arginine","type":"exact"}],"termid":"GO:0018101"}


id: PBO:0074220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 44 member 4","termid":"PBO:0074220"}


id: GO:0102358
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 7,8-dihydroxycoumarin + S-adenosyl-L-methionine = 7-hydroxy-8-methoxycoumarin + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:68960"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"daphnetin-8-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13448"],"termid":"GO:0102358"}


id: PBO:0063819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology like domain family B member 1","termid":"PBO:0063819"}


id: GO:0033235
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the addition of SUMO groups to a protein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein sumoylation","termid":"GO:0033233"},{"relation_name":"is_a","term_name":"positive regulation of protein modification by small protein conjugation or removal","termid":"GO:1903322"},{"relation_name":"positively_regulates","term_name":"protein sumoylation","termid":"GO:0016925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0070647"},{"rel_name":"positively_regulates","termid":"GO:0070647"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0070647"],"is_obsolete":false,"name":"positive regulation of protein sumoylation","synonyms":[{"name":"positive regulation of sumoylation","type":"exact"}],"termid":"GO:0033235"}


id: GO:0052240
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of a specific chemical within a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete positive chemotaxis in other organism involved in symbiotic interaction (obsolete GO:0052240)","synonyms":[{"name":"positive chemotaxis in other organism during symbiotic interaction","type":"related"},{"name":"positive chemotaxis within other organism during symbiotic interaction","type":"related"}],"termid":"GO:0052240"}


id: PBO:0034681
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_nucleus_during_vegetative_growth","termid":"PBO:0034681"}


id: GO:1905636
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of RNA polymerase II regulatory region sequence-specific DNA binding.","definition_xrefs":["GOC:TermGenie","GO_REF:0000059","GOC:PARL","PMID:23675531","GOC:bc"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of RNA polymerase II regulatory region sequence-specific DNA binding (obsolete GO:1905636)","synonyms":[{"name":"activation of RNA polymerase II regulatory region sequence-specific DNA binding","type":"narrow"},{"name":"up regulation of RNA polymerase II regulatory region sequence-specific DNA binding","type":"exact"},{"name":"up-regulation of RNA polymerase II regulatory region sequence-specific DNA binding","type":"exact"},{"name":"upregulation of RNA polymerase II regulatory region sequence-specific DNA binding","type":"exact"}],"termid":"GO:1905636"}


id: FYPO:0004533
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of beta-D-glucan measured in the cell wall is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal beta-glucan level","termid":"FYPO:0001078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal cell wall beta-glucan level","synonyms":[{"name":"normal cell wall beta-D-glucan level","type":"exact"},{"name":"normal cell wall beta-glucan accumulation","type":"related"},{"name":"normal cell wall beta-glucan level during mitotic cell cycle","type":"related"},{"name":"normal cell wall beta-glucan level during vegetative growth","type":"exact"}],"termid":"FYPO:0004533"}


id: PBO:0089726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unknown with similarity to bacterial carboxy-cis,cis-muconate cyclase","termid":"PBO:0089726"}


id: GO:0043424
data:
  {"annotated_genes":["SJAG_06592"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70241],"is_not":false,"summary":null,"term":"GO:0043424"}]},"cv_name":"molecular_function","definition":"Binding to a protein histidine kinase.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein kinase binding","termid":"GO:0019901"}],"gene_count":1,"genes_by_uniquename":{"SJAG_06592":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"protein histidine kinase binding","references_by_uniquename":{"GO_REF:0000002":null},"synonyms":[{"name":"histidine kinase binding","type":"exact"},{"name":"histidine-protein kinase binding","type":"exact"},{"name":"protein-histidine kinase binding","type":"exact"}],"termid":"GO:0043424","terms_by_termid":{"GO:0043424":null}}


id: PBO:0025534
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypophosphatasia","termid":"PBO:0025534"}


id: PBO:0047555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor 12","termid":"PBO:0047555"}


id: GO:0051284
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the binding or confining calcium ions such that they are separated from other components of a biological system.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"regulation of sequestering of calcium ion","termid":"GO:0051282"},{"relation_name":"positively_regulates","term_name":"sequestering of calcium ion","termid":"GO:0051208"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of sequestering of calcium ion","synonyms":[{"name":"activation of sequestering of calcium ion","type":"narrow"},{"name":"positive regulation of calcium ion (Ca2+) retention","type":"exact"},{"name":"positive regulation of calcium ion (Ca2+) sequestering","type":"exact"},{"name":"positive regulation of calcium ion (Ca2+) sequestration","type":"exact"},{"name":"positive regulation of calcium ion (Ca2+) storage","type":"exact"},{"name":"positive regulation of retention of calcium ion (Ca2+)","type":"exact"},{"name":"positive regulation of sequestering of calcium ion (Ca2+)","type":"exact"},{"name":"positive regulation of sequestration of calcium ion (Ca2+)","type":"exact"},{"name":"positive regulation of storage of calcium ion (Ca2+)","type":"exact"},{"name":"stimulation of sequestering of calcium ion","type":"narrow"},{"name":"up regulation of sequestering of calcium ion","type":"exact"},{"name":"up-regulation of sequestering of calcium ion","type":"exact"},{"name":"upregulation of sequestering of calcium ion","type":"exact"}],"termid":"GO:0051284"}


id: PR:O42998
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A HEAT repeat-containing protein 5B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02822","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pof6 interactor protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC27B12.08","secondary_identifiers":["UniProtKB:O42998"],"synonyms":[{"name":"Spom972h-HEATR5B","type":"exact"}],"termid":"PR:O42998"}


id: MONDO:0017486
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"radial hemimelia","termid":"MONDO:0019671"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"radial hemimelia, unilateral","secondary_identifiers":["icd11.foundation:1956537587","Orphanet:295069"],"synonyms":[{"name":"radial longitidinal meromelia, unilateral","type":"exact"}],"termid":"MONDO:0017486","xrefs":{"Monarch":{"xref_id":"0017486"}}}


id: PBO:0051450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable 5-37","termid":"PBO:0051450"}


id: FYPO:0004333
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal during a cellular response to hydrogen peroxide.","definition_xrefs":["PomBase:mah","PMID:22139357"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein phosphorylation during cellular response to oxidative stress","termid":"FYPO:0003692"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0002494","FYPO:0005447","FYPO:0001985","FYPO:0002274"],"is_obsolete":false,"name":"increased protein phosphorylation during cellular response to hydrogen peroxide","synonyms":[{"name":"increased protein phosphorylation during cellular response to H2O2","type":"exact"},{"name":"increased protein phosphorylation during cellular response to hydrogen peroxide during mitotic cell cycle","type":"related"},{"name":"increased protein phosphorylation during cellular response to hydrogen peroxide during vegetative growth","type":"exact"}],"termid":"FYPO:0004333"}


id: FYPO:0002896
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a normal (i.e. indistinguishable from wild type) extent during a cellular response to calcium ions. All genes, or a specific subset of genes, may be measured.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal transcription during vegetative growth","termid":"FYPO:0001855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000294"],"is_obsolete":false,"name":"normal transcription during cellular response to calcium ion","synonyms":[{"name":"normal transcription during cellular response to calcium","type":"exact"},{"name":"normal transcription during cellular response to calcium ion during mitotic cell cycle","type":"related"},{"name":"normal transcription during cellular response to calcium ion during vegetative growth","type":"exact"},{"name":"normal transcription in response to calcium","type":"exact"}],"termid":"FYPO:0002896"}


id: PBO:0005406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiosulfate sulfurtransferase, involved in tRNA wobble position thiolation Tum1 (predicted)","termid":"PBO:0005406"}


id: PBO:0116687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARF like GTPase 16","termid":"PBO:0116687"}


id: GO:0052135
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of environmental oxygen within its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative aerotaxis in host (obsolete GO:0052135)","synonyms":[{"name":"negative aerotaxis within host","type":"exact"}],"termid":"GO:0052135"}


id: PBO:0053946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1249","termid":"PBO:0053946"}


id: GO:0140126
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A histone reader that recognizes a histone H2A acetylated at lysine 15.","definition_xrefs":["PMID:27153538"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2A reader activity","termid":"GO:0140054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140566"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0140566","GO:0003674","GO:0060090","GO:0030674"],"is_obsolete":false,"name":"histone H2AK15ac reader activity","termid":"GO:0140126"}


id: PBO:0068402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 220","termid":"PBO:0068402"}


id: PBO:0050430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein K pseudogene 1","termid":"PBO:0050430"}


id: PBO:0039568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD62P1-PARP4P3 readthrough, transcribed pseudogene","termid":"PBO:0039568"}


id: MONDO:0044253
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete dermatoglyphics--palmar triradius d, absence of (obsolete MONDO:0044253)","secondary_identifiers":["OMIM:221760"],"synonyms":[{"name":"dermatoglyphics--palmar triradius d, absence of","type":"related"}],"termid":"MONDO:0044253","xrefs":{"Monarch":{"xref_id":"0044253"}}}


id: GO:1902125
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of (+)-pinoresinol.","definition_xrefs":["PMID:8910615","PMID:9872995","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound catabolic process","termid":"GO:0019336"},{"relation_name":"is_a","term_name":"lignan catabolic process","termid":"GO:0046273"},{"relation_name":"is_a","term_name":"ether catabolic process","termid":"GO:1901502"},{"relation_name":"is_a","term_name":"(+)-pinoresinol metabolic process","termid":"GO:1902124"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0019748"],"is_obsolete":false,"name":"(+)-pinoresinol catabolic process","synonyms":[{"name":"(+)-pinoresinol breakdown","type":"exact"},{"name":"(+)-pinoresinol catabolism","type":"exact"},{"name":"(+)-pinoresinol degradation","type":"exact"}],"termid":"GO:1902125"}


id: GO:0034265
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of the cytokinin 6-isopentenyladenine.","definition_xrefs":["GOC:mah","PMID:18216168"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokinin biosynthetic process","termid":"GO:0009691"},{"relation_name":"is_a","term_name":"isopentenyl adenine metabolic process","termid":"GO:0034264"},{"relation_name":"is_a","term_name":"purine-containing compound biosynthetic process","termid":"GO:0072522"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"isopentenyl adenine biosynthetic process","synonyms":[{"name":"isopentenyl adenine anabolism","type":"exact"},{"name":"isopentenyl adenine biosynthesis","type":"exact"},{"name":"isopentenyl adenine formation","type":"exact"},{"name":"isopentenyl adenine synthesis","type":"exact"},{"name":"isopentenyladenine biosynthetic process","type":"exact"}],"termid":"GO:0034265"}


id: PBO:0030307
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mislocalized_septum,_near_new_end","termid":"PBO:0030307"}


id: MONDO:0004095
data:
  {"annotated_genes":["SJAG_02527"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89195],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009693"}]},"cv_name":"mondo","definition":"A group of heterogeneous lymphoid tumors generally expressing one or more B-cell antigens or representing malignant transformations of B-lymphocytes.","definition_xrefs":["MESH:D016393"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte disorder","termid":"MONDO:0004805"},{"relation_name":"is_a","term_name":"lymphoma","termid":"MONDO:0005062"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02527":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"B-cell neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:5877","NCIT:C27907","DOID:707","MEDGEN:86953","UMLS:C0079731"],"synonyms":[{"name":"B-cell lymphocytic neoplasm","type":"exact"},{"name":"B-cell lymphoma","type":"related"},{"name":"B-cell neoplasm","type":"exact"},{"name":"lymphoma, B-cell","type":"related"}],"termid":"MONDO:0004095","terms_by_termid":{"MONDO:0009693":null},"xrefs":{"Monarch":{"xref_id":"0004095"}}}


id: PBO:0002970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein, CCR4-NOT complex subunit Rcd1","termid":"PBO:0002970"}


id: PBO:0030165
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_alpha,alpha-trehalase_activity_during_sporulation","termid":"PBO:0030165"}


id: PBO:0085542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; interacts with Kti11p; deletion causes hypersensitivity to zymocin; homologous to mammalian ribosomal protein S7, no bacterial homolog; RPS7B has a paralog, RPS7A, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress","termid":"PBO:0085542"}


id: PBO:0029615
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_vegetative_cell_with_normal_cell_shape","termid":"PBO:0029615"}


id: MONDO:0004609
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of acute infections caused by herpes simplex virus type 1 or type 2 that is characterized by the development of one or more small fluid-filled vesicles with a raised erythematous base on the skin or mucous membrane. It occurs as a primary infection or recurs due to a reactivation of a latent infection. (Dorland, 27th ed.)","definition_xrefs":["MESH:D006561"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Herpesviridae infectious disease","termid":"MONDO:0005794"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"herpes simplex infectious disease","secondary_identifiers":["ICD9:054","MEDGEN:9234","SCTID:88594005","DOID:8566","EFO:1002022","UMLS:C0019348","ICD10CM:B00","ICD9:058.89"],"synonyms":[{"name":"Herpesvirus hominis disease","type":"exact"},{"name":"Simplexvirus caused disease or disorder","type":"exact"},{"name":"Simplexvirus disease or disorder","type":"exact"},{"name":"Simplexvirus infectious disease","type":"exact"},{"name":"herpes simplex","type":"related"},{"name":"herpes simplex complex","type":"related"},{"name":"herpes simplex infection","type":"related"},{"name":"herpes simplex viral infection","type":"related"}],"termid":"MONDO:0004609","xrefs":{"Monarch":{"xref_id":"0004609"}}}


id: PBO:0080356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 2 receptor 11 pseudogene","termid":"PBO:0080356"}


id: GO:0015762
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which rhamnose is transported across a lipid bilayer, from one side of a membrane to the other. Rhamnose occurs commonly as a compound of plant glycosides, in polysaccharides of gums and mucilages, and in bacterial polysaccharides. It is also a component of some plant cell wall polysaccharides and frequently acts as the sugar components of flavonoids.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose transmembrane transport","termid":"GO:0008645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"rhamnose transmembrane transport","synonyms":[{"name":"rhamnose transport","type":"related"}],"termid":"GO:0015762"}


id: PBO:0055931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 37B pseudogene 1","termid":"PBO:0055931"}


id: GO:0043251
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed, sodium-dependent, movement of organic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"sodium-dependent organic anion transport","termid":"GO:0043251"}


id: GO:0047026
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: NAD(P)+ + androsterone = NAD(P)H + H+ + 5-alpha-androstane-3,17-dione. The reaction is A-specific (i.e. the pro-R hydrogen is transferred from the 4-position of reduced nicotinamide cofactor) with respect to NAD(P)+.","definition_xrefs":["EC:1.1.1.213"],"gene_count":0,"genotype_count":0,"name":"obsolete androsterone dehydrogenase (A-specific) activity (obsolete GO:0047026)","secondary_identifiers":["Wikipedia:3alpha-hydroxysteroid_dehydrogenase_(A-specific)"],"termid":"GO:0047026"}


id: PBO:0069509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 777, pseudogene","termid":"PBO:0069509"}


id: PBO:0080510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WARS2 intronic transcript 1","termid":"PBO:0080510"}


id: GO:0008566
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O = ADP + phosphate; drives the transport of proteins into the mitochondrion via the mitochondrial inner membrane translocase complex.","definition_xrefs":["EC:7.4.2.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-transporting ATPase activity","termid":"GO:0015450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0140318"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0140318","GO:0005215"],"is_obsolete":false,"name":"mitochondrial protein-transporting ATPase activity","secondary_identifiers":["MetaCyc:3.6.3.51-RXN"],"synonyms":[{"name":"ATPase-coupled mitochondrial protein transporter activity","type":"exact"}],"termid":"GO:0008566"}


id: PR:O36017
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- lip2 gene.","definition_xrefs":["UniProtKB:O36017","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"octanoyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F10.05c","synonyms":[{"name":"Spom972h-lip2","type":"exact"},{"name":"lipoate biosynthesis protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"lipoate-protein ligase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"lipoyl ligase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"lipoyl/octanoyl transferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O36017"}


id: PBO:0090933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lsm1-7 complex subunit Lsm1","termid":"PBO:0090933"}


id: PBO:0051824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IRF2 divergent transcript","termid":"PBO:0051824"}


id: PBO:0083061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dihydrolipoamide dehydrogenase; the lipoamide dehydrogenase component (E3) of the pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase multi-enzyme complexes; PDH complex is concentrated in spots within the mitochondrial matrix, often near the ERMES complex and near peroxisomes; LPD1 has a paralog, IRC15, that arose from the whole genome duplication","termid":"PBO:0083061"}


id: GO:0071232
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histidine stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to amino acid stimulus","termid":"GO:0071230"},{"relation_name":"is_a","term_name":"response to histidine","termid":"GO:0080052"},{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to histidine","termid":"GO:0071232"}


id: MONDO:0010718
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Absent radius-anogenital anomalies syndrome is a rare, genetic limb reduction defects syndrome characterized by bilateral radial aplasia/hypoplasia manifesting with absent/short forearms in association with anogenital abnormalities (e.g. hypospadias or imperforate anus). Additional features reported include hydrocephalus and absent preaxial digits. There have been no further descriptions in the literature since 1993.","definition_xrefs":["Orphanet:3016"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"absent radius-anogenital anomalies syndrome","secondary_identifiers":["MEDGEN:333312","MESH:C535281","OMIM:312190","UMLS:C1839410","GARD:4633"],"synonyms":[{"name":"radial aplasia and anogenital anomalies","type":"related"},{"name":"radial aplasia, X-linked","type":"related"},{"name":"radius absent anogenital anomalies","type":"related"}],"termid":"MONDO:0010718","xrefs":{"Monarch":{"xref_id":"0010718"}}}


id: PBO:0004860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribokinase (predicted)","termid":"PBO:0004860"}


id: PBO:0052474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF transcription factor 18","termid":"PBO:0052474"}


id: MONDO:0000716
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acquired writing disorder causing a loss in the ability to communicate through writing, either due to some motor dysfunction or the inability to spell.","definition_xrefs":["PMID:21507544","DOID:0060223"],"direct_ancestors":[{"relation_name":"is_a","term_name":"writing disorder","termid":"MONDO:0000599"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"agraphia","secondary_identifiers":["MEDGEN:1790","UMLS:C0001825","MESH:D000381","icd11.foundation:1372096058"],"termid":"MONDO:0000716","xrefs":{"Monarch":{"xref_id":"0000716"}}}


id: PBO:0082987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytosolic asparaginyl-tRNA synthetase; required for protein synthesis, catalyzes the specific attachment of asparagine to its cognate tRNA","termid":"PBO:0082987"}


id: MONDO:1011782
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"digestive system disorder, non-human animal","termid":"MONDO:1011311"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hepatocellular fibrinogen storage disease, non-human animal","secondary_identifiers":["OMIA:002582"],"termid":"MONDO:1011782","xrefs":{"Monarch":{"xref_id":"1011782"}}}


id: PBO:0029340
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_zinc","termid":"PBO:0029340"}


id: FYPO:0003951
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of tyrosine residues in one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal during a cellular response to heat.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete increased protein tyrosine phosphorylation during cellular response to heat (obsolete FYPO:0003951)","synonyms":[{"name":"increased peptidyl-tyrosine phosphorylation during cellular response to heat","type":"exact"},{"name":"increased protein tyrosine phosphorylation during cellular response to heat during mitotic cell cycle","type":"related"},{"name":"increased protein tyrosine phosphorylation during cellular response to heat during vegetative growth","type":"exact"},{"name":"increased tyrosine phosphorylation during cellular response to heat","type":"exact"}],"termid":"FYPO:0003951"}


id: SO:1001281
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Four base pair sequence immediately downstream of the redefined region. The redefined region is a frameshift site. The quadruplet is 2 overlapping codons.","definition_xrefs":["SO:ke","PMID:12519954"],"direct_ancestors":[{"relation_name":"is_a","term_name":"three_prime_recoding_site","termid":"SO:1001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flanking_three_prime_quadruplet_recoding_signal","synonyms":[{"name":"flanking three prime quadruplet recoding signal","type":"exact"}],"termid":"SO:1001281"}


id: GO:0032037
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a heavy chain of a myosin I complex.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myosin I binding","termid":"GO:0017024"},{"relation_name":"is_a","term_name":"myosin heavy chain binding","termid":"GO:0032036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0008092","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"myosin I heavy chain binding","termid":"GO:0032037"}


id: PBO:0079370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin alpha pseudogene 4","termid":"PBO:0079370"}


id: MONDO:0016296
data:
  {"annotated_genes":["SJAG_00321","SJAG_03418","SJAG_03597","SJAG_03698"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88805],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032787"},{"annotations":[87726,87727],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0026763"},{"annotations":[88854],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030886"}]},"cv_name":"mondo","definition":"Holoprosencephaly (HPE) is a complex brain malformation resulting from incomplete cleavage of the prosencephalon, occurring between the 18th and 28th day of gestation, and affecting both the forebrain and face, which results in neurological manifestations and facial anomalies of variable severity.","definition_xrefs":["Orphanet:2162"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"non-acquired combined pituitary hormone deficiency","termid":"MONDO:0018762"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00321":null,"SJAG_03418":null,"SJAG_03597":null,"SJAG_03698":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"holoprosencephaly","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0079541","DOID:4621","ICD10CM:Q04.2","icd11.foundation:1712699129","NORD:1247","MESH:D016142","MedDRA:10056304","SCTID:30915001","NANDO:2200819","GARD:6665","NCIT:C74988","MEDGEN:38214","OMIMPS:236100"],"synonyms":[{"name":"HPE","type":"exact"},{"name":"holoprosencephaly sequence","type":"exact"}],"termid":"MONDO:0016296","terms_by_termid":{"MONDO:0026763":null,"MONDO:0030886":null,"MONDO:0032787":null},"xrefs":{"Monarch":{"xref_id":"0016296"}}}


id: GO:0000425
data:
  {"annotated_genes":["SJAG_01783","SJAG_04963","SJAG_05017","SJAG_04552","SJAG_00114","SJAG_04502","SJAG_00115","SJAG_03851"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73326,73591,74046,74872,75166,79071,81515,81664],"is_not":false,"summary":null,"term":"GO:0000425"}]},"cv_name":"biological_process","definition":"The selective autophagy process in which a peroxisome is degraded by macroautophagy.","definition_xrefs":["PMID:12914914","PMID:16973210","GOC:autophagy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macroautophagy","termid":"GO:0016236"},{"relation_name":"is_a","term_name":"autophagy of peroxisome","termid":"GO:0030242"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00114":null,"SJAG_00115":null,"SJAG_01783":null,"SJAG_03851":null,"SJAG_04502":null,"SJAG_04552":null,"SJAG_04963":null,"SJAG_05017":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006914"],"is_obsolete":false,"name":"pexophagy","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-9664873"],"synonyms":[{"name":"macropexophagy","type":"exact"}],"termid":"GO:0000425","terms_by_termid":{"GO:0000425":null}}


id: PBO:0053859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1132","termid":"PBO:0053859"}


id: GO:0016465
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Multisubunit protein complex with 2x7 (Type I, in most cells) or 2x8 (Type II, in Archaea) ATP-binding sites involved in maintaining an unfolded polypeptide structure before folding or to entry into mitochondria and chloroplasts.","definition_xrefs":["PMID:24816391"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein folding chaperone complex","termid":"GO:0101031"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0032991","GO:0005829","GO:0005575"],"is_obsolete":false,"name":"chaperonin ATPase complex","termid":"GO:0016465"}


id: GO:0016587
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains an Isw1 subunit from the ISWI-family of ATPases and acts to modify chromatin structure.","definition_xrefs":["PMID:16568949","PMID:21810179","GOC:mah","GOC:krc","PMID:15020051","PMID:15284901"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ISWI-type complex","termid":"GO:0031010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005694","GO:0005575"],"is_obsolete":false,"name":"Isw1 complex","termid":"GO:0016587"}


id: GO:0002541
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process activating plasma proteins by proteolysis as part of an acute inflammatory response.","definition_xrefs":["GOC:jal","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein processing","termid":"GO:0016485"},{"relation_name":"part_of","term_name":"acute inflammatory response","termid":"GO:0002526"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0051604","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"activation of plasma proteins involved in acute inflammatory response","termid":"GO:0002541"}


id: GO:0019203
data:
  {"annotated_genes":["SJAG_00039","SJAG_05314","SJAG_01862","SJAG_02713","SJAG_00685","SJAG_01646"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77915,76783,80603,74847],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004331"},{"annotations":[81694,75713],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004805"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: carbohydrate phosphate + H2O = carbohydrate + phosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00039":null,"SJAG_00685":null,"SJAG_01646":null,"SJAG_01862":null,"SJAG_02713":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003674","GO:0016788","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"carbohydrate phosphatase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-3781011","Reactome:R-HSA-3781018","Reactome:R-HSA-3791349"],"termid":"GO:0019203","terms_by_termid":{"GO:0004331":null,"GO:0004805":null}}


id: PBO:0027848
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_mononucleate_vegetative_cell","termid":"PBO:0027848"}


id: GO:0030342
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydroxylation of C-24 of 1-alpha,25-hydroxycholecalciferol (25-hydroxyvitamin D3; calcitriol).","definition_xrefs":["PMID:8506296"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin D 24-hydroxylase activity","termid":"GO:0070576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"1-alpha,25-dihydroxyvitamin D3 24-hydroxylase activity","secondary_identifiers":["RHEA:24964","Reactome:R-HSA-5602004","Reactome:R-HSA-211950","Reactome:R-HSA-209765"],"synonyms":[{"name":"1,25-(OH)2D3 24-hydroxylase activity","type":"exact"},{"name":"calcitriol 24-hydroxylase activity","type":"exact"}],"termid":"GO:0030342"}


id: GO:0043399
data:
  {"annotated_genes":["SJAG_05228"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[58932],"is_not":false,"summary":null,"term":"GO:0043399"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a phosphoribosyl group from 5'-phosphoribosyl-1'-pyrophosphate to position 64 of initiator tRNA.","definition_xrefs":["PMID:22030622","PMID:7954819","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05228":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0140101","GO:0003824","GO:0003674","GO:0140098","GO:0016757"],"is_obsolete":false,"name":"tRNA adenosine(64)-2'-O-ribosylphosphate transferase activity","references_by_uniquename":{"GO_REF:0000002":null},"synonyms":[{"name":"initiator tRNA phosphoribosyl-transferase activity","type":"exact"},{"name":"tRNA A64-2'-O-ribosylphosphate transferase activity","type":"exact"}],"termid":"GO:0043399","terms_by_termid":{"GO:0043399":null}}


id: PBO:0046340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ectonucleotide pyrophosphatase/phosphodiesterase family member 5","termid":"PBO:0046340"}


id: MONDO:0013543
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trypsinogen deficiency","secondary_identifiers":["SCTID:190953007","OMIM:614044","UMLS:C0268417","ICD9:277.89","MEDGEN:450540"],"synonyms":[{"name":"trypsinogen deficiency","type":"exact"}],"termid":"MONDO:0013543","xrefs":{"Monarch":{"xref_id":"0013543"}}}


id: MONDO:0017645
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare choreic movement disorder (obsolete MONDO:0017645)","secondary_identifiers":["Orphanet:306715"],"termid":"MONDO:0017645","xrefs":{"Monarch":{"xref_id":"0017645"}}}


id: GO:1901396
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of transforming growth factor beta2 activation.","definition_xrefs":["GOC:TermGenie","GOC:sl"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transforming growth factor beta2 activation (obsolete GO:1901396)","synonyms":[{"name":"down regulation of TGF-beta 2 activation","type":"exact"},{"name":"down regulation of TGFB2 activation","type":"exact"},{"name":"down regulation of TGFbeta 2 activation","type":"exact"},{"name":"down regulation of transforming growth factor beta2 activation","type":"exact"},{"name":"down-regulation of TGF-beta 2 activation","type":"exact"},{"name":"down-regulation of TGFB2 activation","type":"exact"},{"name":"down-regulation of TGFbeta 2 activation","type":"exact"},{"name":"down-regulation of transforming growth factor beta2 activation","type":"exact"},{"name":"downregulation of TGF-beta 2 activation","type":"exact"},{"name":"downregulation of TGFB2 activation","type":"exact"},{"name":"downregulation of TGFbeta 2 activation","type":"exact"},{"name":"downregulation of transforming growth factor beta2 activation","type":"exact"},{"name":"inhibition of TGF-beta 2 activation","type":"exact"},{"name":"inhibition of TGFB2 activation","type":"exact"},{"name":"inhibition of TGFbeta 2 activation","type":"exact"},{"name":"inhibition of transforming growth factor beta2 activation","type":"narrow"},{"name":"negative regulation of TGF-beta 2 activation","type":"exact"},{"name":"negative regulation of TGFB2 activation","type":"exact"},{"name":"negative regulation of TGFbeta 2 activation","type":"exact"}],"termid":"GO:1901396"}


id: PBO:0088422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII-coated vesicle component Erv25","termid":"PBO:0088422"}


id: GO:0032479
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of interferon type I production. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families.","definition_xrefs":["GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"type I interferon production","termid":"GO:0032606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of type I interferon production","secondary_identifiers":["Reactome:R-HSA-3134975"],"synonyms":[{"name":"regulation of type I IFN production","type":"exact"}],"termid":"GO:0032479"}


id: PBO:0049302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase mu 3 pseudogene 2","termid":"PBO:0049302"}


id: MONDO:1012082
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"tetragametic chimerism, non-human animal","termid":"MONDO:1011918"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetragametic chimerism, water buffalo","secondary_identifiers":["OMIA:000393-89462"],"termid":"MONDO:1012082","xrefs":{"Monarch":{"xref_id":"1012082"}}}


id: FYPO:0007793
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which an increase in RNA level that occurs as part of a cellular response to oxidative stress begins later than normal. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PMID:10428959","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular response to oxidative stress during vegetative growth","termid":"FYPO:0001340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000298","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of increase in RNA level during cellular response to oxidative stress","synonyms":[{"name":"delayed increase in RNA level during cellular response to oxidative stress","type":"exact"},{"name":"delayed onset of increase in RNA level during cellular response to oxidative stress during mitotic cell cycle","type":"related"},{"name":"delayed onset of increase in RNA level during cellular response to oxidative stress during vegetative growth","type":"exact"},{"name":"delayed onset of increase in RNA level in response to oxidative stress","type":"exact"},{"name":"delayed onset of increase in transcript level during cellular response to oxidative stress","type":"exact"}],"termid":"FYPO:0007793"}


id: GO:1900522
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of response to amylopectin.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"is_a","term_name":"regulation of response to amylopectin","termid":"GO:1900521"},{"relation_name":"negatively_regulates","term_name":"response to amylopectin","termid":"GO:0044591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of response to amylopectin","synonyms":[{"name":"down regulation of response to amylopectin","type":"exact"},{"name":"down-regulation of response to amylopectin","type":"exact"},{"name":"downregulation of response to amylopectin","type":"exact"},{"name":"inhibition of response to amylopectin","type":"narrow"}],"termid":"GO:1900522"}


id: PBO:0058663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6791","termid":"PBO:0058663"}


id: PR:Q10252
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 4-hydroxybenzoate polyprenyltransferase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR11048:SF2","OMA:SCHPO00452"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-hydroxybenzoate polyprenyltransferase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC56F8.04c","secondary_identifiers":["UniProtKB:Q10252"],"synonyms":[{"name":"4-HB polyprenyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"4-hydroxybenzoate decaprenyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PHB:PPT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PHB:polyprenyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-COQ2","type":"exact"},{"name":"p-hydroxybenzoate polyprenyl diphosphate transferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"para-hydroxybenzoate--polyprenyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10252"}


id: PBO:0079976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 14","termid":"PBO:0079976"}


id: GO:0035318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Extrusion of a cellular projection from the apical membrane of an epithelial cell in an imaginal disc-derived wing. Outgrowth initiates approximately 35 hours after puparium formation from the distal side of the cell, and at this stage the cellular extension is termed a prehair.","definition_xrefs":["GOC:mtg_sensu","PMID:11064425","PMID:8947551"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-embryonic animal morphogenesis","termid":"GO:0009886"},{"relation_name":"is_a","term_name":"cell projection morphogenesis","termid":"GO:0048858"},{"relation_name":"part_of","term_name":"imaginal disc-derived wing hair organization","termid":"GO:0035317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"imaginal disc-derived wing hair outgrowth","synonyms":[{"name":"wing hair outgrowth","type":"exact"},{"name":"wing prehair outgrowth","type":"related"}],"termid":"GO:0035318"}


id: PATO:0001112
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001112 energy value (obsolete PATO:0001112)","termid":"PATO:0001112"}


id: PBO:0049120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPR107 adjacent cis regulating lncRNA","termid":"PBO:0049120"}


id: GO:0097363
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + [protein]-L-serine = UDP + [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-serine, or UDP-N-acetyl-D-glucosamine + [protein]-L-threonine = UDP + [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-threonine.","definition_xrefs":["GOC:jsg","PMID:22158438","GOC:sart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016757","GO:0140096","GO:0003674"],"is_obsolete":false,"name":"protein O-acetylglucosaminyltransferase activity","secondary_identifiers":["Reactome:R-HSA-9687828","EC:2.4.1.255"],"synonyms":[{"name":"O-GlcNAc transferase","type":"exact"},{"name":"O-linked N-acetylglucosaminyltransferase","type":"exact"},{"name":"OGTase","type":"exact"},{"name":"UDP-N-acetyl-D-glucosamine:protein-O-beta-N-acetyl-D-glucosaminyl transferase","type":"exact"},{"name":"protein O-GlcNAc transferase activity","type":"exact"}],"termid":"GO:0097363"}


id: PBO:0076335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptotagmin 3","termid":"PBO:0076335"}


id: GO:0048346
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of paraxial mesoderm cell fate determination.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mesodermal cell fate determination","termid":"GO:0048336"},{"relation_name":"is_a","term_name":"regulation of paraxial mesodermal cell fate determination","termid":"GO:0048345"},{"relation_name":"positively_regulates","term_name":"paraxial mesodermal cell fate determination","termid":"GO:0048344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of paraxial mesodermal cell fate determination","synonyms":[{"name":"activation of paraxial mesodermal cell fate determination","type":"narrow"},{"name":"stimulation of paraxial mesodermal cell fate determination","type":"narrow"},{"name":"up regulation of paraxial mesodermal cell fate determination","type":"exact"},{"name":"up-regulation of paraxial mesodermal cell fate determination","type":"exact"},{"name":"upregulation of paraxial mesodermal cell fate determination","type":"exact"}],"termid":"GO:0048346"}


id: GO:1900958
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of 17-methylnonadec-1-ene biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of olefin biosynthetic process","termid":"GO:1900913"},{"relation_name":"is_a","term_name":"regulation of 17-methylnonadec-1-ene biosynthetic process","termid":"GO:1900956"},{"relation_name":"is_a","term_name":"positive regulation of 17-methylnonadec-1-ene metabolic process","termid":"GO:1900961"},{"relation_name":"positively_regulates","term_name":"17-methylnonadec-1-ene biosynthetic process","termid":"GO:1900883"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of 17-methylnonadec-1-ene biosynthetic process","synonyms":[{"name":"activation of 17-methylnonadec-1-ene anabolism","type":"exact"},{"name":"activation of 17-methylnonadec-1-ene biosynthesis","type":"exact"},{"name":"activation of 17-methylnonadec-1-ene biosynthetic process","type":"narrow"},{"name":"activation of 17-methylnonadec-1-ene formation","type":"exact"},{"name":"activation of 17-methylnonadec-1-ene synthesis","type":"exact"},{"name":"positive regulation of 17-methylnonadec-1-ene anabolism","type":"exact"},{"name":"positive regulation of 17-methylnonadec-1-ene biosynthesis","type":"exact"},{"name":"positive regulation of 17-methylnonadec-1-ene formation","type":"exact"},{"name":"positive regulation of 17-methylnonadec-1-ene synthesis","type":"exact"},{"name":"up regulation of 17-methylnonadec-1-ene anabolism","type":"exact"},{"name":"up regulation of 17-methylnonadec-1-ene biosynthesis","type":"exact"},{"name":"up regulation of 17-methylnonadec-1-ene biosynthetic process","type":"exact"},{"name":"up regulation of 17-methylnonadec-1-ene formation","type":"exact"},{"name":"up regulation of 17-methylnonadec-1-ene synthesis","type":"exact"},{"name":"up-regulation of 17-methylnonadec-1-ene anabolism","type":"exact"},{"name":"up-regulation of 17-methylnonadec-1-ene biosynthesis","type":"exact"},{"name":"up-regulation of 17-methylnonadec-1-ene biosynthetic process","type":"exact"},{"name":"up-regulation of 17-methylnonadec-1-ene formation","type":"exact"},{"name":"up-regulation of 17-methylnonadec-1-ene synthesis","type":"exact"},{"name":"upregulation of 17-methylnonadec-1-ene anabolism","type":"exact"},{"name":"upregulation of 17-methylnonadec-1-ene biosynthesis","type":"exact"},{"name":"upregulation of 17-methylnonadec-1-ene biosynthetic process","type":"exact"},{"name":"upregulation of 17-methylnonadec-1-ene formation","type":"exact"},{"name":"upregulation of 17-methylnonadec-1-ene synthesis","type":"exact"}],"termid":"GO:1900958"}


id: PBO:0069294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 550, pseudogene","termid":"PBO:0069294"}


id: FYPO:0004927
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which prospore formation assembly is normal (i.e. indistinguishable from wild type). In prospore formation, the nascent membrane forms at the meiotic outer plaque and grows until closure occurs and forespores, or prospores, are formed.","definition_xrefs":["GO:0032120","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"},{"relation_name":"is_a","term_name":"normal meiotic cell cycle process","termid":"FYPO:0007078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal prospore membrane formation","synonyms":[{"name":"normal ascospore-type prospore membrane assembly","type":"exact"},{"name":"normal forespore membrane formation","type":"exact"}],"termid":"FYPO:0004927"}


id: PBO:0075080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 130","termid":"PBO:0075080"}


id: PBO:0004174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER oxidoreductin Ero1a","termid":"PBO:0004174"}


id: GO:0004105
data:
  {"annotated_genes":["SJAG_00946"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71620],"is_not":false,"summary":null,"term":"GO:0004105"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: CTP + choline phosphate = diphosphate + CDP-choline.","definition_xrefs":["EC:2.7.7.15"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytidylyltransferase activity","termid":"GO:0070567"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00946":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016779","GO:0016740"],"is_obsolete":false,"name":"choline-phosphate cytidylyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-1483081","RHEA:18997","MetaCyc:2.7.7.15-RXN"],"synonyms":[{"name":"CDP-choline pyrophosphorylase activity","type":"related"},{"name":"CDP-choline synthetase activity","type":"related"},{"name":"CTP-phosphocholine cytidylyltransferase activity","type":"related"},{"name":"CTP:choline-phosphate cytidylyltransferase activity","type":"exact"},{"name":"CTP:phosphocholine cytidylyltransferase activity","type":"related"},{"name":"CTP:phosphorylcholine cytidylyltransferase activity","type":"related"},{"name":"choline phosphate cytidylyltransferase activity","type":"related"},{"name":"cytidine diphosphocholine pyrophosphorylase activity","type":"related"},{"name":"phosphocholine cytidylyltransferase activity","type":"related"},{"name":"phosphorylcholine cytidylyltransferase activity","type":"related"},{"name":"phosphorylcholine transferase activity","type":"related"},{"name":"phosphorylcholine:CTP cytidylyltransferase activity","type":"related"}],"termid":"GO:0004105","terms_by_termid":{"GO:0004105":null}}


id: PBO:0084683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial cardiolipin-specific phospholipase; functions upstream of Taz1p to generate monolyso-cardiolipin; transcription increases upon genotoxic stress; involved in restricting Ty1 transposition; has homology to mammalian CGI-58","termid":"PBO:0084683"}


id: PATO:0001655
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A concentration quality inhering in a bearer by virtue of the bearer's amount of osmoles of solute per liter of solution.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Osmolarity"],"direct_ancestors":[{"relation_name":"is_a","term_name":"concentration of","termid":"PATO:0000033"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osmolarity","termid":"PATO:0001655"}


id: GO:1904749
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein localization to nucleolus.","definition_xrefs":["PMID:24415760","GOC:TermGenie","GO_REF:0000058","GOC:BHF_telomere","GOC:nc","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to nucleus","termid":"GO:1900180"},{"relation_name":"regulates","term_name":"protein localization to nucleolus","termid":"GO:1902570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of protein localization to nucleolus","synonyms":[{"name":"regulation of protein localisation in nucleolus","type":"exact"},{"name":"regulation of protein localisation to nucleolus","type":"exact"},{"name":"regulation of protein localization in nucleolus","type":"exact"}],"termid":"GO:1904749"}


id: MONDO:0018475
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary dementia","termid":"MONDO:0015547"},{"relation_name":"is_a","term_name":"inherited neurodegenerative disorder","termid":"MONDO:0024237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0005559"],"is_obsolete":false,"name":"PRKAR1B-related neurodegenerative dementia with intermediate filaments","secondary_identifiers":["MEDGEN:1654800","UMLS:C4751505","GARD:21738","Orphanet:412066"],"termid":"MONDO:0018475","xrefs":{"Monarch":{"xref_id":"0018475"}}}


id: PBO:0082830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Conserved protein of the mitochondrial matrix; performs a scaffolding function during assembly of iron-sulfur clusters, interacts physically and functionally with yeast frataxin (Yfh1p); ISU1 has a paralog, ISU2, that arose from the whole genome duplication; isu1 isu2 double mutant is inviable; human homolog ISCU implicated in mitochondrial myopathy, can complement isu1 isu2 double mutant","termid":"PBO:0082830"}


id: PBO:0039517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 33","termid":"PBO:0039517"}


id: GO:1902839
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of nuclear migration along microtubule.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:23087209"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intracellular transport","termid":"GO:0032387"},{"relation_name":"is_a","term_name":"regulation of nuclear migration along microtubule","termid":"GO:1902838"},{"relation_name":"negatively_regulates","term_name":"nuclear migration along microtubule","termid":"GO:0030473"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of nuclear migration along microtubule","synonyms":[{"name":"down regulation of microtubule cytoskeleton-dependent nuclear positioning","type":"exact"},{"name":"down regulation of microtubule cytoskeleton-dependent nucleus positioning","type":"exact"},{"name":"down regulation of microtubule-dependent nuclear positioning","type":"exact"},{"name":"down regulation of microtubule-dependent nucleus positioning","type":"exact"},{"name":"down regulation of microtubule-mediated nuclear migration","type":"exact"},{"name":"down regulation of nuclear migration along microtubule","type":"exact"},{"name":"down regulation of nuclear migration, microtubule-mediated","type":"exact"},{"name":"down regulation of transport of nucleus by microtubules","type":"exact"},{"name":"down regulation of transport of nucleus, microtubule-mediated","type":"exact"},{"name":"down-regulation of microtubule cytoskeleton-dependent nuclear positioning","type":"exact"},{"name":"down-regulation of microtubule cytoskeleton-dependent nucleus positioning","type":"exact"},{"name":"down-regulation of microtubule-dependent nuclear positioning","type":"exact"},{"name":"down-regulation of microtubule-dependent nucleus positioning","type":"exact"},{"name":"down-regulation of microtubule-mediated nuclear migration","type":"exact"},{"name":"down-regulation of nuclear migration along microtubule","type":"exact"},{"name":"down-regulation of nuclear migration, microtubule-mediated","type":"exact"},{"name":"down-regulation of transport of nucleus by microtubules","type":"exact"},{"name":"down-regulation of transport of nucleus, microtubule-mediated","type":"exact"},{"name":"downregulation of microtubule cytoskeleton-dependent nuclear positioning","type":"exact"},{"name":"downregulation of microtubule cytoskeleton-dependent nucleus positioning","type":"exact"},{"name":"downregulation of microtubule-dependent nuclear positioning","type":"exact"},{"name":"downregulation of microtubule-dependent nucleus positioning","type":"exact"},{"name":"downregulation of microtubule-mediated nuclear migration","type":"exact"},{"name":"downregulation of nuclear migration along microtubule","type":"exact"},{"name":"downregulation of nuclear migration, microtubule-mediated","type":"exact"},{"name":"downregulation of transport of nucleus by microtubules","type":"exact"},{"name":"downregulation of transport of nucleus, microtubule-mediated","type":"exact"},{"name":"inhibition of microtubule cytoskeleton-dependent nuclear positioning","type":"narrow"},{"name":"inhibition of microtubule cytoskeleton-dependent nucleus positioning","type":"narrow"},{"name":"inhibition of microtubule-dependent nuclear positioning","type":"narrow"},{"name":"inhibition of microtubule-dependent nucleus positioning","type":"narrow"},{"name":"inhibition of microtubule-mediated nuclear migration","type":"narrow"},{"name":"inhibition of nuclear migration along microtubule","type":"narrow"},{"name":"inhibition of nuclear migration, microtubule-mediated","type":"narrow"},{"name":"inhibition of transport of nucleus by microtubules","type":"narrow"},{"name":"inhibition of transport of nucleus, microtubule-mediated","type":"narrow"},{"name":"negative regulation of microtubule cytoskeleton-dependent nuclear positioning","type":"exact"},{"name":"negative regulation of microtubule cytoskeleton-dependent nucleus positioning","type":"exact"},{"name":"negative regulation of microtubule-dependent nuclear positioning","type":"exact"},{"name":"negative regulation of microtubule-dependent nucleus positioning","type":"exact"},{"name":"negative regulation of microtubule-mediated nuclear migration","type":"exact"},{"name":"negative regulation of nuclear migration, microtubule-mediated","type":"exact"},{"name":"negative regulation of transport of nucleus by microtubules","type":"exact"},{"name":"negative regulation of transport of nucleus, microtubule-mediated","type":"exact"}],"termid":"GO:1902839"}


id: FYPO:0001713
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of malate into the cell is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transport during vegetative growth","termid":"FYPO:0005973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal malate import","synonyms":[{"name":"abnormal malate import across plasma membrane","type":"exact"},{"name":"abnormal malate import during mitotic cell cycle","type":"related"},{"name":"abnormal malate import during vegetative growth","type":"exact"},{"name":"abnormal malate import into cell","type":"exact"},{"name":"abnormal malate uptake","type":"exact"},{"name":"abnormal malic acid import","type":"related"}],"termid":"FYPO:0001713"}


id: PBO:0000131
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.1.1.1","termid":"PBO:0000131"}


id: PBO:0072600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RSF1 intronic transcript 1","termid":"PBO:0072600"}


id: PBO:0024860
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MCM4/6/7 helicase complex binds a 3' single-stranded DNA overhang and translocates along an DNA/RNA duplex in the 3' to 5' direction","termid":"PBO:0024860"}


id: MOD:00478
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to L-glutamyl semialdehyde.","definition_xrefs":["PubMed:9252331","Unimod:35#P","PubMed:11120890","PubMed:2563380","DeltaMass:354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon oxygenated residue","termid":"MOD:00679"},{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"},{"relation_name":"is_a","term_name":"glutamyl semialdehyde","termid":"MOD:01440"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamyl semialdehyde (Pro)","synonyms":[{"name":"Oxidation","type":"related"},{"name":"Oxidation of proline to gamma-glutamyl semialdehyde","type":"exact"},{"name":"Oxidation or Hydroxylation","type":"related"},{"name":"gamma-glutamyl semialdehyde","type":"exact"},{"name":"glutamyl 5-semialdehyde","type":"exact"},{"name":"glutamyl aldehyde","type":"exact"}],"termid":"MOD:00478"}


id: GO:0050467
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = diphosphate + pentalenene.","definition_xrefs":["EC:4.2.3.7","RHEA:18081"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpene synthase activity","termid":"GO:0010334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"pentalenene synthase activity","secondary_identifiers":["MetaCyc:PENTALENENE-SYNTHASE-RXN","KEGG_REACTION:R02305"],"synonyms":[{"name":"2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase (cyclizing, pentalenene-forming)","type":"related"},{"name":"2-trans,6-trans-farnesyldiphosphate diphosphate-lyase (cyclizing, pentalenene-forming)","type":"related"},{"name":"pentalenene synthetase activity","type":"related"}],"termid":"GO:0050467"}


id: GO:0043025
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell body","termid":"GO:0044297"},{"relation_name":"part_of","term_name":"somatodendritic compartment","termid":"GO:0036477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"neuronal cell body","secondary_identifiers":["Wikipedia:Soma_(biology)","NIF_Subcellular:sao1044911821"],"synonyms":[{"name":"neuron cell body","type":"exact"},{"name":"neuronal cell soma","type":"exact"}],"termid":"GO:0043025"}


id: PBO:0072442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 6","termid":"PBO:0072442"}


id: GO:1904465
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of matrix metallopeptidase secretion.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:8679543"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein secretion","termid":"GO:0050709"},{"relation_name":"is_a","term_name":"regulation of matrix metallopeptidase secretion","termid":"GO:1904464"},{"relation_name":"negatively_regulates","term_name":"matrix metallopeptidase secretion","termid":"GO:1990773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of matrix metallopeptidase secretion","synonyms":[{"name":"down regulation of MMP secretion","type":"exact"},{"name":"down regulation of matrix metallopeptidase secretion","type":"exact"},{"name":"down regulation of matrix metalloproteinase secretion","type":"narrow"},{"name":"down-regulation of MMP secretion","type":"exact"},{"name":"down-regulation of matrix metallopeptidase secretion","type":"exact"},{"name":"down-regulation of matrix metalloproteinase secretion","type":"narrow"},{"name":"downregulation of MMP secretion","type":"exact"},{"name":"downregulation of matrix metallopeptidase secretion","type":"exact"},{"name":"downregulation of matrix metalloproteinase secretion","type":"narrow"},{"name":"inhibition of MMP secretion","type":"narrow"},{"name":"inhibition of matrix metallopeptidase secretion","type":"narrow"},{"name":"inhibition of matrix metalloproteinase secretion","type":"narrow"},{"name":"negative regulation of MMP secretion","type":"exact"},{"name":"negative regulation of matrix metalloproteinase secretion","type":"narrow"}],"termid":"GO:1904465"}


id: PBO:0072807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterile alpha motif domain containing 4A","termid":"PBO:0072807"}


id: PBO:0065268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRR29 antisense RNA 1","termid":"PBO:0065268"}


id: PBO:0068454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 30, pseudogene","termid":"PBO:0068454"}


id: PBO:0081699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 621","termid":"PBO:0081699"}


id: GO:0044433
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of cytoplasmic vesicle, a vesicle formed of membrane or protein, found in the cytoplasm of a cell.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cytoplasmic vesicle part (obsolete GO:0044433)","termid":"GO:0044433"}


id: PBO:0072013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S7 pseudogene 15","termid":"PBO:0072013"}


id: PBO:0030476
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_vacuolar_cysteine_level","termid":"PBO:0030476"}


id: GO:0060330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of a response to type II interferon (interferon-gamma). Response to interferon gamma is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-gamma stimulus.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of innate immune response","termid":"GO:0045088"},{"relation_name":"is_a","term_name":"regulation of response to cytokine stimulus","termid":"GO:0060759"},{"relation_name":"regulates","term_name":"response to type II interferon","termid":"GO:0034341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of response to type II interferon","synonyms":[{"name":"regulation of response to gamma-interferon","type":"related"},{"name":"regulation of response to immune interferon","type":"exact"},{"name":"regulation of response to interferon-gamma","type":"broad"},{"name":"regulation of response to type II IFN","type":"exact"}],"termid":"GO:0060330"}


id: MONDO:1010201
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital pseudomyotonia that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myopathy, non-human animal","termid":"MONDO:1010195"},{"relation_name":"is_a","term_name":"hereditary neurological disease, non-human animal","termid":"MONDO:1012972"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital pseudomyotonia, non-human animal","secondary_identifiers":["OMIA:001464"],"termid":"MONDO:1010201","xrefs":{"Monarch":{"xref_id":"1010201"}}}


id: MONDO:0016028
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare neurovascular peripheral pain disorder due to the intermittent blockage of the blood vessels, usually in the lower extremities or hands. This causes hyperemia and inflammation at the origin of burning pain and skin redness. The attacks are periodic and are commonly triggered by heat, pressure, mild activity, exertion, insomnia or stress. Erythromelalgia may occur either as a primary or secondary disorder. Primary erythromelalgia is caused by gene mutations. Secondary erythromelalgia can result from small fiber peripheral neuropathy of any cause, essential thrombocytemia, hypercholesterolemia, mushroom or mercury poisoning, and some autoimmune disorders.","definition_xrefs":["Orphanet:1956"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"peripheral vascular disease","termid":"MONDO:0005294"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"erythromelalgia","secondary_identifiers":["MedDRA:10015284","UMLS:C0014804","DOID:9240","ICD10CM:I73.81","MEDGEN:8687","icd11.foundation:838760425","NCIT:C34593","SCTID:37151006","ICD9:443.82","MESH:D004916"],"termid":"MONDO:0016028","xrefs":{"Monarch":{"xref_id":"0016028"}}}


id: PBO:0059629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTCH2 pseudogene 1","termid":"PBO:0059629"}


id: MONDO:0024528
data:
  {"annotated_genes":["SJAG_02658"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88374],"is_not":false,"summary":null,"term":"MONDO:0024528"}]},"cv_name":"mondo","definition":"Any autosomal dominant progressive external ophthalmoplegia in which the cause of the disease is a mutation in the POLG gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant progressive external ophthalmoplegia","termid":"MONDO:0008003"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02658":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005336","MONDO:0002320","MONDO:0000426","MONDO:0004069"],"is_obsolete":false,"name":"progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:13174","OMIM:157640","UMLS:C1834846","DOID:0111521","MEDGEN:371919"],"synonyms":[{"name":"PEOA1","type":"exact"},{"name":"POLG autosomal dominant progressive external ophthalmoplegia","type":"exact"},{"name":"autosomal dominant progressive external ophthalmoplegia caused by mutation in POLG","type":"exact"},{"name":"progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1","type":"exact"},{"name":"progressive external ophthalmoplegia, autosomal dominant 1","type":"exact"}],"termid":"MONDO:0024528","terms_by_termid":{"MONDO:0024528":null},"xrefs":{"Monarch":{"xref_id":"0024528"}}}


id: GO:0098525
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A neuromuscular junction that functions in the excitation of somatic muscle myotubes, such as an arthropod somatic muscle cells.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"excitatory neuromuscular junction","termid":"GO:0098520"},{"relation_name":"is_a","term_name":"neuromuscular junction of somatic muscle myotube","termid":"GO:0098524"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"excitatory neuromuscular junction of somatic myotube","termid":"GO:0098525"}


id: GO:0032380
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of sterols within cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sterol transport","termid":"GO:0032371"},{"relation_name":"is_a","term_name":"regulation of intracellular lipid transport","termid":"GO:0032377"},{"relation_name":"regulates","term_name":"intracellular sterol transport","termid":"GO:0032366"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of intracellular sterol transport","termid":"GO:0032380"}


id: PBO:0057700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1288","termid":"PBO:0057700"}


id: GO:0051746
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the cyclization of 3(S)-oxidosqualene to (3S,13S,14R)-malabarica-8,17,21-trien-3-ol (thalianol).","definition_xrefs":["PMID:15125655","RHEA:26160"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidosqualene cyclase activity","termid":"GO:0031559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"thalianol synthase activity","secondary_identifiers":["EC:5.4.99.31"],"termid":"GO:0051746"}


id: GO:0052838
data:
  {"annotated_genes":["SJAG_00827"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75444],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052837"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving thiazole, a five-membered heterocyclic ring structure containing a sulfur in the 1-position and a nitrogen in the 3-position.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"oxazole or thiazole metabolic process","termid":"GO:0046484"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00827":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"thiazole metabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"thiazole metabolism","type":"exact"}],"termid":"GO:0052838","terms_by_termid":{"GO:0052837":null}}


id: MONDO:0012386
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trichoscyphodysplasia","secondary_identifiers":["UMLS:C1864943","MEDGEN:355876","MESH:C536557","OMIM:609990"],"synonyms":[{"name":"Trichoscyphodysplasia","type":"exact"},{"name":"cupped metaphyses and cone-Shaped epiphyses with alopecia","type":"related"},{"name":"metaphyseal chondrodysplasia with cone-Shaped epiphyses and alopecia","type":"related"},{"name":"metaphyseal chondrodysplasia with ectodermal dysplasia","type":"related"}],"termid":"MONDO:0012386","xrefs":{"Monarch":{"xref_id":"0012386"}}}


id: MONDO:1012313
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital erythropoietic porphyria, non-human animal","termid":"MONDO:1011742"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital erythropoietic porphyria, pig","secondary_identifiers":["OMIA:001175-9823"],"termid":"MONDO:1012313","xrefs":{"Monarch":{"xref_id":"1012313"}}}


id: PBO:0054087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1440","termid":"PBO:0054087"}


id: GO:0048372
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes committed to become a lateral mesoderm cell.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesodermal cell fate commitment","termid":"GO:0001710"},{"relation_name":"part_of","term_name":"lateral mesodermal cell differentiation","termid":"GO:0048371"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lateral mesodermal cell fate commitment","synonyms":[{"name":"lateral mesoderm cell fate commitment","type":"exact"},{"name":"lateral plate mesoderm cell fate commitment","type":"exact"},{"name":"lateral plate mesodermal cell fate commitment","type":"exact"}],"termid":"GO:0048372"}


id: GO:0000203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Upregulation of MAPKKK activity in the context of sporulation. As in, but not restricted to, the taxon Saccharomyces (Saccharomyces, ncbi_taxonomy_id:4930).","definition_xrefs":["PMID:9561267"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of MAPKKK during sporulation (sensu Saccharomyces) (obsolete GO:0000203)","synonyms":[{"name":"activation of MAPKKK during sporulation (sensu Saccharomyces)","type":"exact"}],"termid":"GO:0000203"}


id: GO:0045192
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of low-density lipoproteins, also known as beta lipoproteins, one of the classes of lipoproteins found in the bloodstream of animals, acting as a carrier for cholesterol and fats.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete low-density lipoprotein catabolic process (obsolete GO:0045192)","synonyms":[{"name":"LDL catabolic process","type":"exact"},{"name":"LDL catabolism","type":"exact"},{"name":"low-density lipoprotein breakdown","type":"exact"},{"name":"low-density lipoprotein catabolic process","type":"exact"},{"name":"low-density lipoprotein catabolism","type":"exact"},{"name":"low-density lipoprotein degradation","type":"exact"}],"termid":"GO:0045192"}


id: SO:0001210
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The region of mRNA (not divisible by 3 bases) that is skipped or added during the process of translational frameshifting (GO:0006452), causing the reading frame to be different.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA_region","termid":"SO:0000836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translational_frameshift","secondary_identifiers":["http://en.wikipedia.org/wiki/Translational_frameshift"],"synonyms":[{"name":"INSDC_qualifier:ribosomal_slippage","type":"exact"},{"name":"ribosomal frameshift","type":"exact"},{"name":"ribosomal slippage","type":"exact"},{"name":"translational frameshift","type":"exact"}],"termid":"SO:0001210"}


id: PBO:0088394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNase P subunit Rpr2","termid":"PBO:0088394"}


id: PBO:0058619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6751","termid":"PBO:0058619"}


id: PBO:0048346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 57","termid":"PBO:0048346"}


id: PBO:0053369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 290","termid":"PBO:0053369"}


id: PBO:0087578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the alpha-1,6 mannosyltransferase complex; type II membrane protein; has a role in retention of glycosyltransferases in the Golgi; involved in osmotic sensitivity and resistance to aminonitrophenyl propanediol","termid":"PBO:0087578"}


id: PATO:0001670
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A susceptibility toward an external stimulus which is lower than normal/average.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"susceptible toward","termid":"PATO:0001152"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased susceptibility toward","synonyms":[{"name":"decreased susceptibility","type":"exact"},{"name":"low susceptibility toward","type":"exact"}],"termid":"PATO:0001670"}


id: GO:0035803
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Construction of an egg coat, a specialized extracellular matrix that surrounds the ovum of animals. The egg coat provides structural support and can play an essential role in oogenesis, fertilization and early development.","definition_xrefs":["GOC:bf","GOC:sart","GOC:yaf","PMID:17163408","PMID:16944418"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process involved in reproduction in multicellular organism","termid":"GO:0022412"},{"relation_name":"part_of","term_name":"oogenesis","termid":"GO:0048477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"egg coat formation","synonyms":[{"name":"VE formation","type":"narrow"},{"name":"ZP assembly","type":"narrow"},{"name":"vitelline envelope formation","type":"narrow"},{"name":"zona pellucida assembly","type":"narrow"}],"termid":"GO:0035803"}


id: GO:0060629
data:
  {"annotated_genes":["SJAG_03048","SJAG_02104","SJAG_04457"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112177,95781],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090006"},{"annotations":[104337],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062123"}]},"cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of homologous chromosome segregation, the cell cycle process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the first division of the meiotic cell cycle. Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner; this pairing off, referred to as synapsis, permits genetic recombination. One homolog (both sister chromatids) of each morphologic type goes into each of the resulting chromosome sets.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chromosome segregation","termid":"GO:0051983"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"homologous chromosome segregation","termid":"GO:0045143"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02104":null,"SJAG_03048":null,"SJAG_04457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"regulation of homologous chromosome segregation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0060629","terms_by_termid":{"GO:0062123":null,"GO:0090006":null}}


id: PBO:0006175
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_input","termid":"PBO:0006175"}


id: PBO:0045926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EGF containing fibulin extracellular matrix protein 2","termid":"PBO:0045926"}


id: PBO:0056071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphocyte antigen 6 family member G5B","termid":"PBO:0056071"}


id: PBO:0063658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase 3, pseudogene","termid":"PBO:0063658"}


id: PBO:0081388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 227","termid":"PBO:0081388"}


id: SO:0000734
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An exemplar is a representative cDNA sequence for each gene. The exemplar approach is a method that usually involves some initial clustering into gene groups and the subsequent selection of a representative from each gene group.","direct_ancestors":[{"relation_name":"has_quality","term_name":"exemplar","termid":"SO:0000864"},{"relation_name":"is_a","term_name":"mRNA","termid":"SO:0000234"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exemplar_mRNA","synonyms":[{"name":"exemplar mRNA","type":"exact"}],"termid":"SO:0000734"}


id: PBO:0065373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pregnancy specific beta-1-glycoprotein 1","termid":"PBO:0065373"}


id: GO:0039548
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont interferes with, inhibits or disrupts a cytoplasmic pattern recognition receptor signaling pathway in a host organism by reducing the activity of host IRF3 (interferon regulatory factor-3). IRF3 is a transcription factor in the RIG-I/MDA-5 signaling pathway. Viral infection triggers phosphorylation of cytoplasmic IRF3, which allows IRF3 to form a homodimer, migrate to the nucleus, and activate transcription of IFN-alpha and IFN-beta genes.","definition_xrefs":["PMID:21632562"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF3 activity","secondary_identifiers":["VZ:757"],"synonyms":[{"name":"inhibition of IRF3-dependent antiviral response","type":"related"},{"name":"inhibition of host IRF3 by virus","type":"related"},{"name":"suppression by virus of host IRF3 activity","type":"related"},{"name":"suppression by virus of host interferon regulatory factor 3","type":"related"},{"name":"suppression by virus of host viral-induced cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF3 activity","type":"narrow"}],"termid":"GO:0039548"}


id: GO:1900279
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of CD4-positive, alpha-beta T cell costimulation.","definition_xrefs":["GOC:BHF","GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of CD4-positive, alpha-beta T cell activation","termid":"GO:2000514"},{"relation_name":"is_a","term_name":"regulation of T cell costimulation","termid":"GO:2000523"},{"relation_name":"regulates","term_name":"CD4-positive, alpha-beta T cell costimulation","termid":"GO:0035783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"regulation of CD4-positive, alpha-beta T cell costimulation","synonyms":[{"name":"regulation of CD4-positive, alpha beta T cell costimulation","type":"exact"}],"termid":"GO:1900279"}


id: GO:0097559
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cilium (also called flagellum) found in Giardia species (trophozoite stage). It is nucleated by the right ventral basal body and exits the cell body proximally and dorsal to the ventral disc.","definition_xrefs":["ISBN:9780124260207","GOC:giardia","PMID:16607022","PMID:5961344"],"direct_ancestors":[{"relation_name":"is_a","term_name":"9+2 motile cilium","termid":"GO:0097729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"right ventral flagellum","synonyms":[{"name":"right ventral cilium","type":"exact"}],"termid":"GO:0097559"}


id: GO:0044313
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A protein deubiquitination process in which a K6-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 6 of the ubiquitin monomers, is removed from a protein.","definition_xrefs":["GOC:sp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein deubiquitination","termid":"GO:0016579"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0070647"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"protein K6-linked deubiquitination","termid":"GO:0044313"}


id: SO:1000132
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The effect of a change in nucleotide sequence.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000132 sequence_variant_effect (obsolete SO:1000132)","synonyms":[{"name":"sequence variant effect","type":"related"}],"termid":"SO:1000132"}


id: PBO:0039287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALG2 alpha-1,3/1,6-mannosyltransferase","termid":"PBO:0039287"}


id: GO:0052147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism within its host organism towards a higher level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete positive energy taxis in host (obsolete GO:0052147)","synonyms":[{"name":"positive energy taxis within host","type":"exact"}],"termid":"GO:0052147"}


id: FYPO:0007801
data:
  {"alleles_by_uniquename":{"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121663],"is_not":false,"summary":null,"term":"FYPO:0007801"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which a dividing cell at the growith end of a hypha has a septum in an abnormal location. Normally, the septum forms in the cytosol-enriched portion of the cell, displaced slightly off-center toward the portion of the cell occupied by the vacuole.","definition_xrefs":["PMID:30726171","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized septum","termid":"FYPO:0004293"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02392":null},"genotype_count":1,"genotypes_by_uniquename":{"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mislocalized hyphal septum","references_by_uniquename":{"PMID:30726171":null},"single_locus_annotated_genes":["SJAG_02392"],"single_locus_genotype_uniquenames":["pom1delta"],"synonyms":[{"name":"abnormal hyphal septum localization","type":"related"},{"name":"abnormal hyphal septum location","type":"exact"},{"name":"abnormal hyphal septum position","type":"exact"},{"name":"abnormal hyphal septum positioning","type":"related"},{"name":"mislocalised hyphal septum","type":"exact"},{"name":"mislocalized septum during hyphal growth","type":"exact"},{"name":"mislocalized septum in hypha","type":"exact"},{"name":"mislocalized septum in hyphal growth","type":"exact"},{"name":"misplaced hyphal septum","type":"exact"}],"termid":"FYPO:0007801","terms_by_termid":{"FYPO:0007801":null}}


id: PBO:0083622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3-binding protein of the mitochondrial pyruvate dehydrogenase complex; plays a structural role in the complex by binding and positioning dihydrolipoamide dehydrogenase (E3) to the dihydrolipoamide acetyltransferase (E2) core","termid":"PBO:0083622"}


id: PBO:0078608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 62","termid":"PBO:0078608"}


id: PBO:0075733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRP14 pseudogene 1","termid":"PBO:0075733"}


id: GO:0061028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The establishment of a barrier between endothelial cell layers, such as those in the brain, lung or intestine, to exert specific and selective control over the passage of water and solutes, thus allowing formation and maintenance of compartments that differ in fluid and solute composition.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endothelial cell development","termid":"GO:0001885"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of endothelial barrier","termid":"GO:0061028"}


id: PBO:0065897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB40C, member RAS oncogene family","termid":"PBO:0065897"}


id: PBO:0082546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cell wall protein with similarity to glucanases; may play a role in conjugation during mating based on mutant phenotype and its regulation by Ste12p; SWC10 has a paralog, SCW4, that arose from the whole genome duplication","termid":"PBO:0082546"}


id: GO:0089703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-aspartate out of the vacuole, across the vacuolar membrane.","definition_xrefs":["PMID:21307582"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuolar transmembrane transport","termid":"GO:0034486"},{"relation_name":"is_a","term_name":"vacuolar amino acid transmembrane transport","termid":"GO:0034487"},{"relation_name":"is_a","term_name":"L-aspartate transmembrane transport","termid":"GO:0070778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"L-aspartate transmembrane export from vacuole","termid":"GO:0089703"}


id: PBO:0052997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"laminin subunit beta 2","termid":"PBO:0052997"}


id: PBO:0024471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces pombe specific","termid":"PBO:0024471"}


id: PBO:0004839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylosuccinate lyase Ade8","termid":"PBO:0004839"}


id: PBO:0001951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor Ace2","termid":"PBO:0001951"}


id: PR:Q1K9C4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hul5 gene.","definition_xrefs":["UniProtKB:Q1K9C4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 ubiquitin protein ligase C167.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC167.07c","synonyms":[{"name":"Spom972h-hul5","type":"exact"}],"termid":"PR:Q1K9C4"}


id: GO:0003824
data:
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id: MONDO:0011900
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"disseminated superficial actinic porokeratosis","termid":"MONDO:0019212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"porokeratosis 4, disseminated superficial actinic type","secondary_identifiers":["OMIM:607728","MEDGEN:335900","GARD:9504","UMLS:C1843180"],"synonyms":[{"name":"POROK4","type":"exact"},{"name":"porokeratosis 4, disseminated superficial actinic","type":"exact"},{"name":"porokeratosis 4, disseminated superficial actinic type","type":"exact"},{"name":"porokeratosis, disseminated superficial actinic, 2","type":"related"}],"termid":"MONDO:0011900","xrefs":{"Monarch":{"xref_id":"0011900"}}}


id: GO:0018730
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + (E)-glutaconate = acetate + glutaconyl-1-CoA.","definition_xrefs":["EC:2.8.3.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-transferase activity","termid":"GO:0008410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016782"}],"interesting_parent_ids":["GO:0016782","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"glutaconate CoA-transferase activity","secondary_identifiers":["UM-BBD_reactionID:r0085","RHEA:23208","MetaCyc:GLUTACONATE-COA-TRANSFERASE-RXN"],"synonyms":[{"name":"acetyl-CoA:(E)-glutaconate CoA-transferase activity","type":"related"}],"termid":"GO:0018730"}


id: PR:Q9P6S5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ask1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P6S5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DASH complex subunit ask1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC27.02c","synonyms":[{"name":"Spom972h-ask1","type":"exact"},{"name":"associated with spindles and kinetochores protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"meiotically up-regulated gene 181 protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"outer kinetochore protein ask1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P6S5"}


id: GO:0050884
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism voluntarily modulates its posture, the alignment of its anatomical parts.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuromuscular process","termid":"GO:0050905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuromuscular process controlling posture","synonyms":[{"name":"regulation of posture","type":"exact"}],"termid":"GO:0050884"}


id: MONDO:0023388
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pityriasis rotunda is a rare skindisease characterized by round, scaly, pigmented patches that mainly occur on the trunk, arms and legs. There are two types of pityriasis rotunda.","definition_xrefs":["GARD:0010904"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin disorder","termid":"MONDO:0005093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"pityriasis rotunda","secondary_identifiers":["GARD:10904","SCTID:238639005","icd11.foundation:873448556","MEDGEN:575364","UMLS:C0343060"],"synonyms":[{"name":"Pityriasis rotunda","type":"related"}],"termid":"MONDO:0023388","xrefs":{"Monarch":{"xref_id":"0023388"}}}


id: MONDO:0006694
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Atherosclerosis of the cerebral vasculature.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atherosclerosis","termid":"MONDO:0005311"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebral atherosclerosis","secondary_identifiers":["ICD10CM:I67.2","MedDRA:1008095","MEDGEN:40189","SCTID:55382008","NCIT:C34459","MESH:D002537","DOID:12720","icd11.foundation:1710003414","UMLS:C0007775","ICD9:437.0","EFO:1000860"],"synonyms":[{"name":"cerebral atherosclerosis","type":"exact"}],"termid":"MONDO:0006694","xrefs":{"Monarch":{"xref_id":"0006694"}}}


id: MONDO:0020523
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An instance of parathyroid gland adenoma that is caused by an inherited modification of the individual's genome.","definition_xrefs":["MONDO:patterns/hereditary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"parathyroid gland adenoma","termid":"MONDO:0006890"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial parathyroid adenoma","secondary_identifiers":["icd11.foundation:55934726","UMLS:C1840403","MEDGEN:374460","Orphanet:99877"],"synonyms":[{"name":"hereditary parathyroid gland adenoma","type":"exact"}],"termid":"MONDO:0020523","xrefs":{"Monarch":{"xref_id":"0020523"}}}


id: PBO:0041716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calneuron 1","termid":"PBO:0041716"}


id: PBO:0028727
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_cytoskeleton_organization_at_cell_tip","termid":"PBO:0028727"}


id: PBO:0084146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High affinity iron permease; involved in the transport of iron across the plasma membrane; forms complex with Fet3p; expression is regulated by iron; protein abundance increases in response to DNA replication stress","termid":"PBO:0084146"}


id: PBO:0046021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 2A pseudogene 2","termid":"PBO:0046021"}


id: PBO:0056094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ly6/neurotoxin 1","termid":"PBO:0056094"}


id: PBO:0056918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MINDY lysine 48 deubiquitinase 3","termid":"PBO:0056918"}


id: MONDO:0054588
data:
  {"annotated_genes":["SJAG_03126","SJAG_02536"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87346,87347],"is_not":false,"summary":null,"term":"MONDO:0054588"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Noonan syndrome-like disorder with loose anagen hair","termid":"MONDO:0011899"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02536":null,"SJAG_03126":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"Noonan syndrome-like disorder with loose anagen hair 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:617506","UMLS:C4479577","DOID:0080693","NCIT:C176940","MEDGEN:1376945"],"synonyms":[{"name":"NSLH2","type":"related"},{"name":"Noonan syndrome-like disorder with loose anagen hair 2","type":"exact"}],"termid":"MONDO:0054588","terms_by_termid":{"MONDO:0054588":null},"xrefs":{"Monarch":{"xref_id":"0054588"}}}


id: GO:1902920
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving poly(hydroxyvalerate).","definition_xrefs":["GOC:TermGenie","PMID:21705209","GO_REF:0000068","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"poly(hydroxyalkanoate) metabolic process","termid":"GO:1901440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"poly(hydroxyvalerate) metabolic process","synonyms":[{"name":"poly(hydroxyvalerate) metabolism","type":"exact"}],"termid":"GO:1902920"}


id: PBO:0059924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 10","termid":"PBO:0059924"}


id: PBO:0060062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 9","termid":"PBO:0060062"}


id: PBO:0077313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 51","termid":"PBO:0077313"}


id: FYPO:0007800
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the endoplasmic reticulum is abolished, and some of the protein is present at the cell surface instead.","definition_xrefs":["PomBase:mah","PMID:33536395"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to endoplasmic reticulum during vegetative growth","termid":"FYPO:0003777"},{"relation_name":"is_a","term_name":"protein mislocalized to cell surface during vegetative growth","termid":"FYPO:0007799"},{"relation_name":"is_a","term_name":"abolished protein localization to endoplasmic reticulum","termid":"FYPO:0008405"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to endoplasmic reticulum, with protein mislocalized to cell surface","synonyms":[{"name":"abolished luminal ER protein retention","type":"exact"},{"name":"abolished protein localization to ER, with protein mislocalized to cell surface","type":"exact"},{"name":"abolished protein localization to endoplasmic reticulum, with protein mislocalized to cell surface during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to endoplasmic reticulum, with protein mislocalized to cell surface during vegetative growth","type":"exact"}],"termid":"FYPO:0007800"}


id: PBO:0065558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostaglandin E synthase 3","termid":"PBO:0065558"}


id: PBO:0018084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Tam13","termid":"PBO:0018084"}


id: GO:0060829
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that decreases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin in the anterior end of the neural plate. This regulation sets up a Wnt signaling gradient along the anterior/posterior axis.","definition_xrefs":["GOC:sdb_2009","GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation (obsolete GO:0060829)","synonyms":[{"name":"negative regulation of Wnt receptor signaling pathway through beta-catenin involved in neural plate anterior/posterior pattern formation","type":"exact"},{"name":"negative regulation of canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern","type":"exact"},{"name":"negative regulation of canonical Wnt receptor signalling pathway involved in neural plate anterior/posterior pattern formation","type":"exact"},{"name":"negative regulation of canonical Wnt-activated signaling pathway involved in neural plate anterior/posterior pattern","type":"exact"}],"termid":"GO:0060829"}


id: PBO:0047709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formin like 3","termid":"PBO:0047709"}


id: PATO:0001210
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001210 plane_angle_quantity (obsolete PATO:0001210)","termid":"PATO:0001210"}


id: PBO:0116755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMARCE1 pseudogene 1","termid":"PBO:0116755"}


id: GO:0035697
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of a CD8-positive, alpha-beta T cell from the blood vessels into the surrounding tissue.","definition_xrefs":["GOC:BHF","CL:0000625"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell extravasation","termid":"GO:0072683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD8-positive, alpha-beta T cell extravasation","termid":"GO:0035697"}


id: PBO:0073492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingosine-1-phosphate phosphatase 1","termid":"PBO:0073492"}


id: MONDO:0009435
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hypospasdias B intellectual deficit, Goldblatt type is a very rare multiple congenital anomalies syndrome described in three brothers of one South-African family, and characterized by hypospadias and intellectual deficit, in association with mirocephaly, craniofacial dysmorphism, joint laxity and beaked nails.","definition_xrefs":["Orphanet:2261"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypospadias-intellectual disability, Goldblatt type syndrome","secondary_identifiers":["SCTID:716096005","MESH:C563067","MEDGEN:162896","GARD:2928","OMIM:241760","UMLS:C0795989"],"synonyms":[{"name":"Goldblatt Wallis syndrome","type":"related"},{"name":"Goldblatt-Wallis syndrome","type":"exact"},{"name":"hypospadias intellectual deficit Goldblatt type","type":"related"},{"name":"hypospadias intellectual disability Goldblatt type","type":"related"},{"name":"hypospadias intellectual disability syndrome","type":"related"},{"name":"hypospadias mental retardation Goldblatt type","type":"related"},{"name":"hypospadias mental retardation syndrome","type":"related"},{"name":"hypospadias-intellectual disability syndrome","type":"related"},{"name":"hypospadias-mental retardation syndrome","type":"related"}],"termid":"MONDO:0009435","xrefs":{"Monarch":{"xref_id":"0009435"}}}


id: GO:0010785
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of clathrin and adaptor proteins to Golgi membranes during the formation of transport vesicles that will move from the plasma membrane to the endosome, forming a vesicle coat.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clathrin coating of Golgi vesicle","termid":"GO:0048202"},{"relation_name":"part_of","term_name":"vesicle targeting, plasma membrane to endosome","termid":"GO:0048201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0016192","GO:0044085","GO:0006810","GO:0065003","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"clathrin coating of Golgi vesicle, plasma membrane to endosome targeting","termid":"GO:0010785"}


id: MONDO:0000080
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Oto-palato-digital syndrome (obsolete MONDO:0000080)","termid":"MONDO:0000080","xrefs":{"Monarch":{"xref_id":"0000080"}}}


id: PBO:0001315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type ATPase V0 proteolipid subunit (predicted)","termid":"PBO:0001315"}


id: PR:Q9USQ6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- syj2 gene.","definition_xrefs":["UniProtKB:Q9USQ6","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol-1,4,5-trisphosphate 5-phosphatase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC577.13","synonyms":[{"name":"Spom972h-syj2","type":"exact"},{"name":"synaptojanin-like protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USQ6"}


id: GO:1902687
data:
  {"annotated_genes":["SJAG_03535","SJAG_03280"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[78526,80206],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017177"}]},"cv_name":"cellular_component","definition":"A protein complex which is capable of glucosidase activity.","definition_xrefs":["GO_REF:0000088","GOC:TermGenie","GOC:bhm","PMID:23826932"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03280":null,"SJAG_03535":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"glucosidase complex","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:1902687","terms_by_termid":{"GO:0017177":null}}


id: PBO:0071055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 57","termid":"PBO:0071055"}


id: PBO:0038538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase domain containing 13","termid":"PBO:0038538"}


id: GO:0032611
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of interleukin-1 beta due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interleukin-1 production","termid":"GO:0032612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"interleukin-1 beta production","secondary_identifiers":["GO:0050702","GO:0050720"],"synonyms":[{"name":"IL-1 beta production","type":"exact"},{"name":"interleukin-1 beta biosynthetic process","type":"narrow"},{"name":"interleukin-1 beta secretion","type":"narrow"}],"termid":"GO:0032611"}


id: MONDO:0009753
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete neurovisceral storage disease with Curvilinear bodies (obsolete MONDO:0009753)","secondary_identifiers":["OMIM:257000","MESH:C564944"],"synonyms":[{"name":"neurovisceral storage disease with Curvilinear bodies","type":"exact"}],"termid":"MONDO:0009753","xrefs":{"Monarch":{"xref_id":"0009753"}}}


id: PBO:0052729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 21","termid":"PBO:0052729"}


id: PBO:0044058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystatin S","termid":"PBO:0044058"}


id: PBO:0027648
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_swollen_spheroid_vegetative_cell","termid":"PBO:0027648"}


id: GO:0043760
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-acetyl-L-2,6-diaminoheptanedioate + 2-oxoglutarate = N-acetyl-2-L-amino-6-oxoheptanedioate + L-glutamate.","definition_xrefs":["PMID:1906065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016769","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"acetyldiaminopimelate aminotransferase activity","synonyms":[{"name":"N-acetyl-L,L-diaminopimelate aminotransferase activity","type":"exact"},{"name":"N-acetyl-diaminopimelate aminotransferase activity","type":"exact"}],"termid":"GO:0043760"}


id: PBO:0090265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER ubiquitin-protein ligase E3 Doa10","termid":"PBO:0090265"}


id: PBO:0062565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily AE member 1 pseudogene","termid":"PBO:0062565"}


id: PBO:0047391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 31","termid":"PBO:0047391"}


id: MONDO:1011975
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"vision disorder, non-human animal","termid":"MONDO:1011367"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital blindness, non-human animal","secondary_identifiers":["OMIA:000115"],"termid":"MONDO:1011975","xrefs":{"Monarch":{"xref_id":"1011975"}}}


id: GO:1905580
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ERBB3 signaling pathway.","definition_xrefs":["GOC:TermGenie","GOC:als","GO_REF:0000058","PMID:27353365"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of ERBB signaling pathway","termid":"GO:1901186"},{"relation_name":"is_a","term_name":"regulation of ERBB3 signaling pathway","termid":"GO:1905578"},{"relation_name":"positively_regulates","term_name":"ERBB3 signaling pathway","termid":"GO:0038129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of ERBB3 signaling pathway","synonyms":[{"name":"activation of ERBB3 signaling pathway","type":"narrow"},{"name":"activation of ERBB3 signalling pathway","type":"narrow"},{"name":"activation of HER3 signaling pathway","type":"narrow"},{"name":"activation of receptor tyrosine-protein kinase erbB-3 signaling pathway","type":"narrow"},{"name":"positive regulation of ERBB3 signalling pathway","type":"exact"},{"name":"positive regulation of HER3 signaling pathway","type":"exact"},{"name":"positive regulation of receptor tyrosine-protein kinase erbB-3 signaling pathway","type":"exact"},{"name":"up regulation of ERBB3 signaling pathway","type":"exact"},{"name":"up regulation of ERBB3 signalling pathway","type":"exact"},{"name":"up regulation of HER3 signaling pathway","type":"exact"},{"name":"up regulation of receptor tyrosine-protein kinase erbB-3 signaling pathway","type":"exact"},{"name":"up-regulation of ERBB3 signaling pathway","type":"exact"},{"name":"up-regulation of ERBB3 signalling pathway","type":"exact"},{"name":"up-regulation of HER3 signaling pathway","type":"exact"},{"name":"up-regulation of receptor tyrosine-protein kinase erbB-3 signaling pathway","type":"exact"},{"name":"upregulation of ERBB3 signaling pathway","type":"exact"},{"name":"upregulation of ERBB3 signalling pathway","type":"exact"},{"name":"upregulation of HER3 signaling pathway","type":"exact"},{"name":"upregulation of receptor tyrosine-protein kinase erbB-3 signaling pathway","type":"exact"}],"termid":"GO:1905580"}


id: GO:0060346
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of creating a trabecula in the bone. A trabecula is a tissue element in the form of a small beam, strut or rod.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trabecula formation","termid":"GO:0060343"},{"relation_name":"part_of","term_name":"skeletal system morphogenesis","termid":"GO:0048705"},{"relation_name":"part_of","term_name":"bone trabecula morphogenesis","termid":"GO:0061430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bone trabecula formation","synonyms":[{"name":"bone trabecula biogenesis","type":"related"},{"name":"bone trabeculation","type":"exact"},{"name":"skeletal trabecula biogenesis","type":"related"},{"name":"skeletal trabecula formation","type":"exact"},{"name":"skeletal trabeculation","type":"exact"}],"termid":"GO:0060346"}


id: PBO:0034122
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-surrounds","termid":"PBO:0034122"}


id: PBO:0062151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily G member 1 pseudogene","termid":"PBO:0062151"}


id: PR:Q9Y7J6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ppk21 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7J6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase ppk21 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1778.10c","synonyms":[{"name":"Spom972h-ppk21","type":"exact"}],"termid":"PR:Q9Y7J6"}


id: GO:0033421
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes a CCU codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003723","GO:0060090","GO:0003674"],"is_obsolete":false,"name":"CCU codon-amino acid adaptor activity","synonyms":[{"name":"CCT codon-amino acid adaptor activity","type":"exact"},{"name":"proline tRNA","type":"related"}],"termid":"GO:0033421"}


id: GO:0060474
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the controlled movement of a flagellated sperm cell is initiated as part of the process required for flagellated sperm to reach fertilization competence.","definition_xrefs":["GOC:krc","GOC:dph","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive process","termid":"GO:0022414"},{"relation_name":"is_a","term_name":"positive regulation of flagellated sperm motility","termid":"GO:1902093"},{"relation_name":"part_of","term_name":"sperm capacitation","termid":"GO:0048240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of flagellated sperm motility involved in capacitation","synonyms":[{"name":"positive regulation of sperm motility involved in capacitation","type":"related"}],"termid":"GO:0060474"}


