# terms

id: PBO:0004064
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.4.1.5","termid":"PBO:0004064"}


id: PBO:0076103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntaxin 8","termid":"PBO:0076103"}


id: PBO:0052577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine methyltransferase 5C","termid":"PBO:0052577"}


id: GO:0042974
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a nuclear retinoic acid receptor, a ligand-regulated transcription factor belonging to the nuclear receptor superfamily.","definition_xrefs":["GOC:jl","PMID:12476796"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear receptor binding","termid":"GO:0016922"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"nuclear retinoic acid receptor binding","synonyms":[{"name":"RAR binding","type":"exact"},{"name":"retinoic acid receptor binding","type":"broad"}],"termid":"GO:0042974"}


id: MONDO:0958345
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare dysraphic abnormality characterized by a persistent connection between the neural tissue and overlying skin. The stalk-like connection consists of a fibroneural tract (mainly composed of fibrous attenuated mesenchymal tissue and neural elements without an epithelial lining) connecting the skin lesion to the underlying dorsal surface of the spinal cord. Fibroneural stalk varies in thickness and complexity and they pass through the deep fascia, a bifid lamina/ the interspinous ligament, and the dura. It can be associated with filum anomaly. Chiari II malformation is not present.","definition_xrefs":["Orphanet:645196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dysraphism with stalk","termid":"MONDO:0958259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"limited dorsal myeloschisis","secondary_identifiers":["UMLS:C5781237","MEDGEN:1853137"],"termid":"MONDO:0958345","xrefs":{"Monarch":{"xref_id":"0958345"}}}


id: PBO:0055879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 4B","termid":"PBO:0055879"}


id: PBO:0001495
data:
  {"annotation_feature_type":"gene","cv_name":"ex_tools","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"substrate for chaperone activity assay","termid":"PBO:0001495"}


id: PBO:0054513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1913","termid":"PBO:0054513"}


id: PBO:0076828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis, prostate and placenta expressed","termid":"PBO:0076828"}


id: PBO:0047114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 162 member A","termid":"PBO:0047114"}


id: GO:0045764
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving amino acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of amino acid metabolic process","termid":"GO:0006521"},{"relation_name":"is_a","term_name":"positive regulation of metabolic process","termid":"GO:0009893"},{"relation_name":"positively_regulates","term_name":"amino acid metabolic process","termid":"GO:0006520"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"positively_regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006520"],"is_obsolete":false,"name":"positive regulation of amino acid metabolic process","synonyms":[{"name":"activation of amino acid metabolic process","type":"narrow"},{"name":"positive regulation of amino acid metabolism","type":"exact"},{"name":"positive regulation of cellular amino acid metabolic process","type":"exact"},{"name":"stimulation of amino acid metabolic process","type":"narrow"},{"name":"up regulation of amino acid metabolic process","type":"exact"},{"name":"up-regulation of amino acid metabolic process","type":"exact"},{"name":"upregulation of amino acid metabolic process","type":"exact"}],"termid":"GO:0045764"}


id: SO:0002018
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcript variant occurring within a conserved region of an intron.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intron_variant","termid":"SO:0001627"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved_intron_variant","secondary_identifiers":["http://snpeff.sourceforge.net/SnpEff_manual.html"],"synonyms":[{"name":"Jannovar:conserved_intron_variant","type":"exact"},{"name":"conserved intron variant","type":"exact"},{"name":"snpEff:INTRON_CONSERVED","type":"exact"}],"termid":"SO:0002018"}


id: GO:0045272
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A subcomplex of the respiratory chain located in the plasma membrane. It contains about 25 different polypeptide subunits, including NADH dehydrogenase (ubiquinone), flavin mononucleotide and several different iron-sulfur clusters containing non-heme iron. The iron undergoes oxidation-reduction between Fe(II) and Fe(III), and catalyzes proton translocation linked to the oxidation of NADH by ubiquinone. Examples of this component are found in bacterial species.","definition_xrefs":["GOC:mtg_sensu","ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete plasma membrane respiratory chain complex I (obsolete GO:0045272)","synonyms":[{"name":"NADH dehydrogenase (ubiquinone) complex","type":"broad"},{"name":"respiratory chain complex I","type":"broad"}],"termid":"GO:0045272"}


id: MONDO:1010244
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"L-2-hydroxyglutaricacidemia that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neurological disease, non-human animal","termid":"MONDO:1012972"},{"relation_name":"is_a","term_name":"inborn errors of metabolism, non-human animal","termid":"MONDO:1012979"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-2-hydroxyglutaricacidemia, non-human animal","secondary_identifiers":["OMIA:001371"],"termid":"MONDO:1010244","xrefs":{"Monarch":{"xref_id":"1010244"}}}


id: PBO:0004703
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gcp Four Homolog","termid":"PBO:0004703"}


id: PBO:0048877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A6 family member C","termid":"PBO:0048877"}


id: PBO:0062919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyrimidinergic receptor P2Y4","termid":"PBO:0062919"}


id: PBO:0091063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-V, S-(hydroxymethyl)glutathione synthase activity","termid":"PBO:0091063"}


id: GO:0051612
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of serotonin into a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of neurotransmitter uptake","termid":"GO:0051581"},{"relation_name":"is_a","term_name":"regulation of serotonin uptake","termid":"GO:0051611"},{"relation_name":"negatively_regulates","term_name":"serotonin uptake","termid":"GO:0051610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of serotonin uptake","synonyms":[{"name":"down regulation of serotonin uptake","type":"exact"},{"name":"down-regulation of serotonin uptake","type":"exact"},{"name":"downregulation of serotonin uptake","type":"exact"},{"name":"negative regulation of 5-HT uptake","type":"exact"},{"name":"negative regulation of 5-hydroxytryptamine uptake","type":"exact"},{"name":"negative regulation of 5HT uptake","type":"exact"},{"name":"negative regulation of serotonin import","type":"exact"}],"termid":"GO:0051612"}


id: GO:0006760
data:
  {"annotated_genes":["SJAG_04156","SJAG_03275","SJAG_03914","SJAG_01466","SJAG_00815","SJAG_03712","SJAG_02225","SJAG_01198","SJAG_00529","SJAG_00106","SJAG_02408","SJAG_01126","SJAG_01616","SJAG_03224","SJAG_01766"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110328,114420],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009257"},{"annotations":[70010],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006761"},{"annotations":[72829],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046452"},{"annotations":[61212,110329,57126,114421,70640,106751,108053],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046656"},{"annotations":[72831],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046655"},{"annotations":[74326],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009396"},{"annotations":[81583,61214,57125,72830,108054],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046654"},{"annotations":[60013,72671,77476,73614,74325,106752,78363,61657],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035999"},{"annotations":[70011,73979],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046901"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a folic acid-containing compound, i.e. any of a group of heterocyclic compounds based on the pteroic acid skeleton conjugated with one or more L-glutamic acid or L-glutamate units.","definition_xrefs":["GOC:ai","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified amino acid metabolic process","termid":"GO:0006575"},{"relation_name":"is_a","term_name":"pteridine-containing compound metabolic process","termid":"GO:0042558"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00106":null,"SJAG_00529":null,"SJAG_00815":null,"SJAG_01126":null,"SJAG_01198":null,"SJAG_01466":null,"SJAG_01616":null,"SJAG_01766":null,"SJAG_02225":null,"SJAG_02408":null,"SJAG_03224":null,"SJAG_03275":null,"SJAG_03712":null,"SJAG_03914":null,"SJAG_04156":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"folic acid-containing compound metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000043":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"folate and derivative metabolic process","type":"exact"},{"name":"folate and derivative metabolism","type":"exact"},{"name":"folate-containing compound metabolic process","type":"exact"},{"name":"folate-containing compound metabolism","type":"exact"},{"name":"folic acid and derivative metabolic process","type":"exact"},{"name":"folic acid and derivative metabolism","type":"exact"},{"name":"folic acid-containing compound metabolism","type":"exact"},{"name":"vitamin B9 and derivative metabolic process","type":"exact"},{"name":"vitamin B9 and derivative metabolism","type":"exact"},{"name":"vitamin M and derivative metabolic process","type":"exact"},{"name":"vitamin M and derivative metabolism","type":"exact"}],"termid":"GO:0006760","terms_by_termid":{"GO:0006761":null,"GO:0009257":null,"GO:0009396":null,"GO:0035999":null,"GO:0046452":null,"GO:0046654":null,"GO:0046655":null,"GO:0046656":null,"GO:0046901":null}}


id: PBO:0116908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein, UPF0643 family","termid":"PBO:0116908"}


id: GO:0042302
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The action of a molecule that contributes to the structural integrity of a cuticle.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structural molecule activity","termid":"GO:0005198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005198"}],"interesting_parent_ids":["GO:0003674","GO:0005198"],"is_obsolete":false,"name":"structural constituent of cuticle","termid":"GO:0042302"}


id: MONDO:0021108
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by acute inflammation of the meninges of the brain and/or spinal cord.","definition_xrefs":["NCIT:C26828"],"direct_ancestors":[{"relation_name":"is_a","term_name":"encephalomyelitis","termid":"MONDO:0005156"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meningitis","secondary_identifiers":["MEDGEN:6298","MESH:D008581","UMLS:C0025289","SCTID:7180009","ICD9:322.9"],"synonyms":[{"name":"inflammation of meninx","type":"exact"},{"name":"meningitis","type":"exact"},{"name":"meningitis (disease)","type":"exact"},{"name":"meninx inflammation","type":"exact"}],"termid":"MONDO:0021108","xrefs":{"Monarch":{"xref_id":"0021108"}}}


id: PBO:0048776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanosine monophosphate reductase","termid":"PBO:0048776"}


id: FYPO:0005494
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transport phenotype observed in the vegetative growth phase of the life cycle in which the transport of proteins along microtubules is decreased. Transport of all proteins or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein transport during vegetative growth","termid":"FYPO:0000541"},{"relation_name":"is_a","term_name":"decreased transport along microtubule during vegetative growth","termid":"FYPO:0005526"},{"relation_name":"is_a","term_name":"abnormal protein transport along microtubule during vegetative growth","termid":"FYPO:0005830"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein transport along microtubule during vegetative growth","synonyms":[{"name":"decreased protein movement along microtubule during vegetative growth","type":"exact"},{"name":"decreased protein transport along microtubule during mitotic cell cycle","type":"related"},{"name":"reduced protein transport along microtubule during vegetative growth","type":"exact"}],"termid":"FYPO:0005494"}


id: MONDO:0009772
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete neuro-ophthalmological disease (obsolete MONDO:0015368)","termid":"MONDO:0015368"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oculorenocerebellar syndrome","secondary_identifiers":["UMLS:C1850331","GARD:4050","MEDGEN:340516","MESH:C537739","Orphanet:2715","OMIM:257970"],"synonyms":[{"name":"ORC syndrome","type":"related"},{"name":"absence of the cerebellar granular layer, intellectual disability, tapetoretinal degeneration and progressive glomerulopathy","type":"related"},{"name":"absence of the cerebellar granular layer, mental retardation, tapetoretinal degeneration and progressive glomerulopathy","type":"related"},{"name":"oculorenocerebellar syndrome","type":"exact"}],"termid":"MONDO:0009772","xrefs":{"Monarch":{"xref_id":"0009772"}}}


id: PBO:0075585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine peptidase inhibitor Kazal type 9","termid":"PBO:0075585"}


id: PBO:0001636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"minor serine/threonine protein phosphatase Ppa1","termid":"PBO:0001636"}


id: FYPO:0006802
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which filamentous actin (F-actin) is present in a dispersed form in the cell. Normal F-actin structures (cables and cortical patches) may or may not also be present.","definition_xrefs":["PomBase:mah","PMID:9786952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton morphology during vegetative growth","termid":"FYPO:0000350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0004803"],"is_obsolete":false,"name":"dispersed filamentous actin","synonyms":[{"name":"delocalised F-actin","type":"exact"},{"name":"delocalised actin","type":"related"},{"name":"delocalized F-actin","type":"exact"},{"name":"dispersed F-actin","type":"exact"},{"name":"dispersed actin localization during vegetative growth","type":"exact"},{"name":"dispersed filamentous actin during mitotic cell cycle","type":"related"},{"name":"dispersed filamentous actin during vegetative growth","type":"exact"},{"name":"dispersed filamentous actin in cell","type":"exact"}],"termid":"FYPO:0006802"}


id: PATO:0000497
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000497 relative rhythym value (obsolete PATO:0000497)","termid":"PATO:0000497"}


id: MOD:01100
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HMP (hydroxymethylphenyl)/TFA adduct","termid":"MOD:01100"}


id: PBO:0000079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S. pombe specific DUF999 family protein 2","termid":"PBO:0000079"}


id: PBO:0068395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 214","termid":"PBO:0068395"}


id: PBO:0109042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane palmitoyltransferase Pfa5","termid":"PBO:0109042"}


id: PBO:0066319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rabenosyn, RAB effector","termid":"PBO:0066319"}


id: PBO:0018030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"magnesium ion transmembrane transporter Mrs2 (predicted)","termid":"PBO:0018030"}


id: GO:1900177
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of aflatoxin biosynthetic process.","definition_xrefs":["GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"is_a","term_name":"regulation of secondary metabolite biosynthetic process","termid":"GO:1900376"},{"relation_name":"regulates","term_name":"aflatoxin biosynthetic process","termid":"GO:0045122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"regulation of aflatoxin biosynthetic process","synonyms":[{"name":"regulation of aflatoxin anabolism","type":"exact"},{"name":"regulation of aflatoxin biosynthesis","type":"exact"},{"name":"regulation of aflatoxin formation","type":"exact"},{"name":"regulation of aflatoxin synthesis","type":"exact"}],"termid":"GO:1900177"}


id: GO:0032072
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of a restriction endodeoxyribonuclease activity, the catalysis of endonucleolytic cleavage of DNA in a site-specific manner, resulting in double-strand breaks.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endodeoxyribonuclease activity","termid":"GO:0032071"},{"relation_name":"is_a","term_name":"regulation of hydrolase activity","termid":"GO:0051336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of restriction endodeoxyribonuclease activity","termid":"GO:0032072"}


id: PBO:0116953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TORC1 inhibitor, Ecl1","termid":"PBO:0116953"}


id: FYPO:0008041
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-4,5-bisphosphate measured in a cell is lower than normal.","direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular phosphoinositide level","termid":"FYPO:0005588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased cellular phosphatidylinositol-4,5-bisphosphate level","synonyms":[{"name":"decreased phosphatidylinositol-4,5-bisphosphate level in cell","type":"exact"}],"termid":"FYPO:0008041"}


id: FYPO:0003478
data:
  {"alleles_by_uniquename":{"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121573,121370],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004318"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype that affects signal transduction. Signal transduction is the process in which a signal is conveyed to trigger a change in the activity or state of a cell. It begins with reception of a signal and ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. A phenotype may affect one or more steps in one or more signal transduction pathways.","definition_xrefs":["GO:0007165","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype","termid":"FYPO:0000145"},{"relation_name":"is_a","term_name":"cellular response phenotype","termid":"FYPO:0000298"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01330":null},"genotype_count":1,"genotypes_by_uniquename":{"mad2delta":{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0000002"],"is_obsolete":false,"name":"signal transduction phenotype","references_by_uniquename":{"PMID:21802294":null,"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_01330"],"single_locus_genotype_uniquenames":["mad2delta"],"synonyms":[{"name":"fission yeast signal transduction phenotype","type":"exact"}],"termid":"FYPO:0003478","terms_by_termid":{"FYECO:0000162":null,"FYPO:0004318":null}}


id: PBO:0054307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1699","termid":"PBO:0054307"}


id: PBO:0044313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b561 family member D1","termid":"PBO:0044313"}


id: GO:0016163
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 16 ATP + 16 H2O + N2 + 8 reduced [2Fe-2S]-[ferredoxin] = 16 ADP + 6 H+ + H2 + 2 NH4+ + 8 oxidized [2Fe-2S]-[ferredoxin] + 16 phosphate.","definition_xrefs":["RHEA:21448","PMID:15382920"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on iron-sulfur proteins as donors, dinitrogen as acceptor","termid":"GO:0016732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"nitrogenase activity","secondary_identifiers":["EC:1.18.6.1","MetaCyc:NITROGENASE-RXN","UM-BBD_reactionID:r1810"],"synonyms":[{"name":"iron-iron nitrogenase activity","type":"narrow"},{"name":"molybdenum-iron nitrogenase activity","type":"narrow"},{"name":"reduced ferredoxin:dinitrogen oxidoreductase (ATP-hydrolysing) activity","type":"related"},{"name":"vanadium-iron nitrogenase activity","type":"narrow"}],"termid":"GO:0016163"}


id: GO:0009146
data:
  {"annotated_genes":["SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100916],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035863"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside triphosphate catabolic process","termid":"GO:0009143"},{"relation_name":"is_a","term_name":"purine nucleoside triphosphate metabolic process","termid":"GO:0009144"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04487":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"purine nucleoside triphosphate catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"purine nucleoside triphosphate breakdown","type":"exact"},{"name":"purine nucleoside triphosphate catabolism","type":"exact"},{"name":"purine nucleoside triphosphate degradation","type":"exact"}],"termid":"GO:0009146","terms_by_termid":{"GO:0035863":null}}


id: GO:1905703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of inhibitory synapse assembly.","definition_xrefs":["GOC:TermGenie","PMID:27779093","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of synapse assembly","termid":"GO:0051964"},{"relation_name":"is_a","term_name":"regulation of inhibitory synapse assembly","termid":"GO:1905702"},{"relation_name":"negatively_regulates","term_name":"inhibitory synapse assembly","termid":"GO:1904862"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of inhibitory synapse assembly","synonyms":[{"name":"down regulation of inhibitory synapse assembly","type":"exact"},{"name":"down regulation of inhibitory synapse formation","type":"exact"},{"name":"down-regulation of inhibitory synapse assembly","type":"exact"},{"name":"down-regulation of inhibitory synapse formation","type":"exact"},{"name":"downregulation of inhibitory synapse assembly","type":"exact"},{"name":"downregulation of inhibitory synapse formation","type":"exact"},{"name":"inhibition of inhibitory synapse assembly","type":"narrow"},{"name":"inhibition of inhibitory synapse formation","type":"narrow"},{"name":"negative regulation of inhibitory synapse formation","type":"exact"}],"termid":"GO:1905703"}


id: PR:Q9HDY0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ypt71 gene.","definition_xrefs":["UniProtKB:Q9HDY0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP-binding protein ypt71 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB1A10.10c","synonyms":[{"name":"Spom972h-ypt71","type":"exact"}],"termid":"PR:Q9HDY0"}


id: MONDO:0850058
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Niemann-Pick disease","termid":"MONDO:0001982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002525","MONDO:0005046","MONDO:0002561"],"is_obsolete":false,"name":"chronic neurovisceral acid sphingomyelinase deficiency","secondary_identifiers":["GARD:22456","Orphanet:618891","UMLS:C5539139","MEDGEN:1842316"],"termid":"MONDO:0850058","xrefs":{"Monarch":{"xref_id":"0850058"}}}


id: PBO:0060660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"natural killer cell cytotoxicity receptor 3 ligand 1","termid":"PBO:0060660"}


id: MONDO:0034733
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A rare otorhinolaryngological malformation characterized by a hypoplastic or absent cochlear nerve, resulting in variable hearing loss or total deafness, depending on the quantity of nerve fibers present. The condition can be unilateral or bilateral, occur as an isolated malformation or in the context of a complex syndrome, and may be associated with a hypoplastic internal auditory or cochlear nerve canal. [Orphanet:502318]","definition_xrefs":["Orphanet:502318"],"gene_count":0,"genotype_count":0,"name":"obsolete cochlear nerve deficiency (obsolete MONDO:0034733)","secondary_identifiers":["ICD10CM:H93.3"],"termid":"MONDO:0034733","xrefs":{"Monarch":{"xref_id":"0034733"}}}


id: MONDO:0003124
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A sex cord-stromal tumor that arises from the testis and is characterized by the presence of cells that resemble the successive stages of development of Leydig cells. It usually presents as a painless testicular mass. Gynecomastia is present in approximately thirty percent of the cases. Libido may be decreased. In children, precocious puberty may be present. A minority of cases exhibit malignant characteristics.","definition_xrefs":["NCIT:C6356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"testicular sex cord-stromal neoplasm","termid":"MONDO:0003125"},{"relation_name":"is_a","term_name":"Leydig cell tumor","termid":"MONDO:0006266"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testicular Leydig cell tumor","secondary_identifiers":["UMLS:C0863027","DOID:4756","MEDGEN:163584","SCTID:67871000119105"],"synonyms":[{"name":"Leydig cell neoplasm of testis","type":"exact"},{"name":"Leydig cell neoplasm of the testis","type":"exact"},{"name":"Leydig cell tumor of testis","type":"exact"},{"name":"Leydig cell tumor of the testis","type":"related"},{"name":"Leydig cell tumour of testis","type":"exact"},{"name":"Leydig cell tumour of the testis","type":"related"},{"name":"testicular Leydig cell neoplasm","type":"exact"},{"name":"testicular Leydig cell tumor","type":"exact"},{"name":"testis Leydig cell tumor","type":"exact"},{"name":"testis Leydig cell tumour","type":"exact"}],"termid":"MONDO:0003124","xrefs":{"Monarch":{"xref_id":"0003124"}}}


id: PBO:0003874
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.6.1.31","termid":"PBO:0003874"}


id: GO:0042611
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A transmembrane protein complex composed of an MHC alpha chain and, in most cases, either an MHC class II beta chain or an invariant beta2-microglobin chain, and with or without a bound peptide, lipid, or polysaccharide antigen.","definition_xrefs":["GOC:jl","GOC:add","PMID:15928678","ISBN:0781735149","PMID:16153240"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"MHC protein complex","termid":"GO:0042611"}


id: PBO:0088610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pumilio family RNA-binding protein Puf3","termid":"PBO:0088610"}


id: GO:0099611
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that regulates the potential at which an axon potential is triggered.","definition_xrefs":["ISBN:978-0071390118"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of action potential","termid":"GO:0098900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of action potential firing threshold","termid":"GO:0099611"}


id: FYPO:0004076
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that is elongated, has more than one septum, and undergoes one or two rounds of cell division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated multiseptate vegetative cell","termid":"FYPO:0000223"},{"relation_name":"is_a","term_name":"inviable after spore germination, single or double cell division, elongated cell","termid":"FYPO:0002724"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0000032","FYPO:0001320","FYPO:0001985","FYPO:0000005","FYPO:0000004"],"is_obsolete":false,"name":"inviable after spore germination, single or double cell division, elongated multiseptate cell","synonyms":[{"name":"inviable following spore germination, single or double cell division, elongated multiseptate cell","type":"exact"},{"name":"inviable germinated spore, single or double cell division, elongated multiseptate cell","type":"exact"},{"name":"lethal after spore germination, single or double cell division, elongated multiseptate cell","type":"exact"}],"termid":"FYPO:0004076"}


id: PBO:0050900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon alpha inducible protein 27","termid":"PBO:0050900"}


id: PBO:0070355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 28","termid":"PBO:0070355"}


id: FYPO:0005320
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during metaphase of mitosis is normal (i.e. indistinguishable from wild type). Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein level during vegetative growth","termid":"FYPO:0000833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal protein level during mitotic metaphase","synonyms":[{"name":"normal protein accumulation during mitotic metaphase","type":"related"},{"name":"normal protein level during metaphase of mitotic cell cycle","type":"exact"},{"name":"normal protein level during mitotic metaphase during vegetative growth","type":"exact"}],"termid":"FYPO:0005320"}


id: PBO:0052524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 38","termid":"PBO:0052524"}


id: MONDO:0019129
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"This syndrome is characterized by the association of global developmental delay, osteopenia and skin anomalies.","definition_xrefs":["Orphanet:73223"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"global developmental delay-osteopenia-ectodermal defect syndrome","secondary_identifiers":["SCTID:717813005","MEDGEN:929239","UMLS:C4303570","GARD:18919"],"termid":"MONDO:0019129","xrefs":{"Monarch":{"xref_id":"0019129"}}}


id: MONDO:0044987
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A disease or disorder that involves the face.","definition_xrefs":["MONDO:patterns/location"],"gene_count":0,"genotype_count":0,"name":"obsolete face disorder (obsolete MONDO:0044987)","secondary_identifiers":["SCTID:118930001"],"synonyms":[{"name":"disease of face","type":"exact"},{"name":"disease or disorder of face","type":"exact"},{"name":"disorder of face","type":"exact"},{"name":"face disease","type":"exact"},{"name":"face disease or disorder","type":"exact"}],"termid":"MONDO:0044987","xrefs":{"Monarch":{"xref_id":"0044987"}}}


id: PBO:0086297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a role in snRNA and snoRNA cap trimethylation; interacts with Tgs1p and shows similar phenotypes; required for trimethylation of the caps of spliceosomal snRNAs and the U3 snoRNA, and for efficient 3' end processing of U3 snoRNA; may act as a specificity factor for Tgs1p","termid":"PBO:0086297"}


id: GO:0070059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced in response to a stimulus indicating endoplasmic reticulum (ER) stress, and ends when the execution phase of apoptosis is triggered. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen.","definition_xrefs":["GOC:mah","PMID:18701708","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to endoplasmic reticulum stress","termid":"GO:0034976"},{"relation_name":"is_a","term_name":"intrinsic apoptotic signaling pathway","termid":"GO:0097193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress","synonyms":[{"name":"ER stress-induced apoptosis","type":"exact"},{"name":"apoptosis in response to ER stress","type":"exact"},{"name":"apoptosis in response to endoplasmic reticulum stress","type":"broad"},{"name":"apoptosis triggered by ER stress","type":"exact"},{"name":"endoplasmic reticulum stress-induced apoptosis","type":"exact"},{"name":"intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress","type":"exact"}],"termid":"GO:0070059"}


id: GO:0008170
data:
  {"annotated_genes":["SJAG_04181","SJAG_03487","SJAG_03008","SJAG_02281","SJAG_02692","SJAG_04159","SJAG_01079","SJAG_02756","SJAG_00886","SJAG_02350","SJAG_00769","SJAG_00596","SJAG_03949","SJAG_01958","SJAG_04574","SJAG_04034","SJAG_03289","SJAG_00286","SJAG_01536","SJAG_02821","SJAG_01482","SJAG_01425","SJAG_01146","SJAG_00943","SJAG_03228","SJAG_01193","SJAG_03548","SJAG_03630","SJAG_02873","SJAG_02868","SJAG_00812","SJAG_00825","SJAG_03869","SJAG_02271"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70126],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052909"},{"annotations":[80453],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052907"},{"annotations":[77271],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008469"},{"annotations":[112192,75054],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990259"},{"annotations":[97396],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140954"},{"annotations":[80386],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046975"},{"annotations":[65287],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140955"},{"annotations":[58245],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062122"},{"annotations":[80385],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042800"},{"annotations":[58964],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140999"},{"annotations":[112488],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140948"},{"annotations":[63706],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140949"},{"annotations":[112490],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140947"},{"annotations":[119047],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140943"},{"annotations":[74108],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004482"},{"annotations":[97414,98407],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0102559"},{"annotations":[57603],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000773"},{"annotations":[80003],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004608"},{"annotations":[82035],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019702"},{"annotations":[102358,114675],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035242"},{"annotations":[102359,114676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035241"},{"annotations":[89519],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0018064"},{"annotations":[78143,80209,118848,75323,76806,73788,64929,71785,79436],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016279"},{"annotations":[59891],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000179"},{"annotations":[96813],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070043"},{"annotations":[81390],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070042"},{"annotations":[63917],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0160102"},{"annotations":[61601],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0160104"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a methyl group to the nitrogen atom of an acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase 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id: PR:O14253
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nuclear cap-binding protein subunit 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01348","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear cap-binding protein subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6G10.07","secondary_identifiers":["UniProtKB:O14253"],"synonyms":[{"name":"80 kDa nuclear cap-binding protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"CBP80 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"NCBP 80 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-NCBP1","type":"exact"}],"termid":"PR:O14253"}


id: MONDO:0006778
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign melanocytic nevus with a halo appearance.","definition_xrefs":["NCIT:C7602"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"melanocytic nevus","termid":"MONDO:0005073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"halo nevus","secondary_identifiers":["EFO:1000958","MedDRA:10062794","ICD9:709.09","MEDGEN:141636","ICDO:8723/0","MESH:D055882","SCTID:398028009","UMLS:C0474824"],"synonyms":[{"name":"halo nevi","type":"exact"},{"name":"leukoderma acquisitum Centrifugum of Sutton","type":"related"}],"termid":"MONDO:0006778","xrefs":{"Monarch":{"xref_id":"0006778"}}}


id: GO:0042406
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of the endoplasmic reticulum membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:curators","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of organelle membrane","termid":"GO:0031312"},{"relation_name":"part_of","term_name":"endoplasmic reticulum membrane","termid":"GO:0005789"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"part_of","termid":"GO:0005789"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005783","GO:0005789","GO:0005575"],"is_obsolete":false,"name":"extrinsic component of endoplasmic reticulum membrane","synonyms":[{"name":"extrinsic to ER membrane","type":"exact"},{"name":"extrinsic to endoplasmic reticulum membrane","type":"narrow"}],"termid":"GO:0042406"}


id: GO:0098598
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Vocalisation behavior that is the result of learning, or the process by which new vocalizations are learned.","definition_xrefs":["GOC:BHF","GOC:dos","GOC:rl","PMID:17035521","PMID:16418265"],"direct_ancestors":[{"relation_name":"is_a","term_name":"learning or memory","termid":"GO:0007611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"learned vocalization behavior or vocal learning","termid":"GO:0098598"}


id: MONDO:0018748
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autoimmune disease characterized by subepidermal blisters and linear deposition of autoantibodies at the dermoepidermal junction. The accumulated autoantibodies are of immunoglobulin A and occasionally immunoglobulin G classes against epidermal basement membrane proteins. The dermatosis is sometimes associated with malignancies and use of certain drugs (e.g., vancomycin).","definition_xrefs":["MESH:D062027"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune bullous skin disease","termid":"MONDO:0019337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005093"],"is_obsolete":false,"name":"linear IgA Dermatosis","secondary_identifiers":["MEDGEN:473106","Orphanet:46488","EFO:0009313","GARD:18834","UMLS:C0406650","MedDRA:10024515","SCTID:95330001","icd11.foundation:1802341051"],"termid":"MONDO:0018748","xrefs":{"Monarch":{"xref_id":"0018748"}}}


id: PBO:0000934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved protein (fungal and protazoan)","termid":"PBO:0000934"}


id: GO:0062104
data:
  {"annotated_genes":["SJAG_04682"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[106887],"is_not":false,"summary":null,"term":"GO:0062104"}]},"cv_name":"molecular_function","definition":"Binding to a region of RNA containing a Pumilio-response element element. The consensus sequence for the element is UGUAAAUA.","definition_xrefs":["PMID:30601114"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA binding","termid":"GO:0003723"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04682":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003723","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"pumilio-response element binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"PRE binding","type":"exact"}],"termid":"GO:0062104","terms_by_termid":{"GO:0062104":null}}


id: PBO:0035755
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_rate_of_medial_membrane_band_assembly","termid":"PBO:0035755"}


id: GO:0033708
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH, and (1R,2S)-1-hydroxybutane-1,2,4-tricarboxylate + NAD+ = 2-oxoadipate + CO2 + NADH + H+.","definition_xrefs":["EC:1.1.1.286"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"isocitrate-homoisocitrate dehydrogenase activity","synonyms":[{"name":"PH1722","type":"related"},{"name":"homoisocitrate-isocitrate dehydrogenase activity","type":"related"},{"name":"isocitrate(homoisocitrate):NAD+ oxidoreductase (decarboxylating) activity","type":"related"}],"termid":"GO:0033708"}


id: PBO:0055198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2623","termid":"PBO:0055198"}


id: GO:0002103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Endonucleolytic cleavage of a pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 4.5S rRNA, and the 5S rRNA in that order from 5' to 3' along the primary transcript. Primary ribosomal RNA transcripts with four genes, in this order, are produced in the chloroplasts of vascular plants. Note that the use of the word tetracistronic refers only to the number of mature rRNA molecules which will be produced from the primary transcript and ignores tRNAs that may also be present within the primary transcript.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA processing","termid":"GO:0006364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0042254","GO:0044085","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)","termid":"GO:0002103"}


id: GO:0016037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The reception of a photon by a cell.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"},{"relation_name":"part_of","term_name":"detection of light stimulus","termid":"GO:0009583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"light absorption","synonyms":[{"name":"absorption of light","type":"exact"}],"termid":"GO:0016037"}


id: GO:0099535
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The extracellular matrix of the perisynaptic space (the extracellular space adjacent to the synapse) and the synaptic cleft.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specialized extracellular matrix","termid":"GO:0140047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"synapse-associated extracellular matrix","synonyms":[{"name":"extra-synaptic extracellular matrix","type":"exact"},{"name":"synapse-associated ECM","type":"exact"}],"termid":"GO:0099535"}


id: MONDO:0016186
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"qualitative or quantitative protein defects in neuromuscular diseases","termid":"MONDO:0016139"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"qualitative or quantitative defects of myofibrillar proteins","secondary_identifiers":["GARD:20425","UMLS:C5680851","Orphanet:209038","MEDGEN:1842566"],"termid":"MONDO:0016186","xrefs":{"Monarch":{"xref_id":"0016186"}}}


id: PBO:0055169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2593","termid":"PBO:0055169"}


id: MONDO:0025030
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Highly contagious infectious dermatitis with lesions near the interdigital spaces usually in cattle. It causes discomfort and often severe lameness (lameness, animal). Lesions can be either erosive or proliferative and wart-like with papillary growths and hypertrophied hairs. dichelobacter nodosus and treponema are the most commonly associated causative agents for this mixed bacterial infection disease.","definition_xrefs":["MESH:D058066"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cattle disease","termid":"MONDO:0024913"},{"relation_name":"is_a","term_name":"skin disease caused by bacterial infection, non-human animal","termid":"MONDO:0700109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"digital dermatitis in cattle","synonyms":[{"name":"Dermatitides, bovine digital","type":"related"},{"name":"Dermatitides, digital","type":"related"},{"name":"Ovine digital Dermatitides","type":"related"},{"name":"Ovine digital dermatitis","type":"related"},{"name":"Papillomatoses, digital","type":"related"},{"name":"Warts, bovine foot","type":"related"},{"name":"bovine digital Dermatitides","type":"related"},{"name":"bovine digital dermatitis","type":"related"},{"name":"bovine foot Warts","type":"related"},{"name":"bovine foot wart","type":"related"},{"name":"bovine hairy footwart","type":"related"},{"name":"bovine hairy footwarts","type":"related"},{"name":"dermatitis, bovine digital","type":"related"},{"name":"dermatitis, digital","type":"related"},{"name":"digital Dermatitides","type":"related"},{"name":"digital Dermatitides, Ovine","type":"related"},{"name":"digital Dermatitides, bovine","type":"related"},{"name":"digital Dermatitides, papillomatous","type":"related"},{"name":"digital Papillomatoses","type":"related"},{"name":"digital dermatitis, Ovine","type":"related"},{"name":"digital dermatitis, bovine","type":"related"},{"name":"digital dermatitis, papillomatous","type":"related"},{"name":"digital papillomatosis","type":"related"},{"name":"foot Warts, bovine","type":"related"},{"name":"foot wart, bovine","type":"related"},{"name":"footwart, bovine hairy","type":"related"},{"name":"footwarts, bovine hairy","type":"related"},{"name":"hairy footwart, bovine","type":"related"},{"name":"hairy footwarts, bovine","type":"related"},{"name":"papillomatosis, digital","type":"related"},{"name":"papillomatous digital Dermatitides","type":"related"},{"name":"papillomatous digital dermatitis","type":"related"},{"name":"wart, bovine foot","type":"related"}],"termid":"MONDO:0025030","xrefs":{"Monarch":{"xref_id":"0025030"}}}


id: PR:O94616
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpc40 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94616"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerases I and III subunit RPAC1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1289.07c","synonyms":[{"name":"AC40 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"DNA-directed RNA polymerases I and III 40 kDa polypeptide (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNA polymerases I and III subunit AC1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RPC39 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rpc40","type":"exact"}],"termid":"PR:O94616"}


id: FYECO:0000154
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ethanolamine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ ethanolamine","synonyms":[{"name":"2-aminoethanol added","type":"exact"},{"name":"ETA added","type":"exact"},{"name":"MEA added","type":"exact"},{"name":"monoethanolamine added","type":"exact"}],"termid":"FYECO:0000154"}


id: MONDO:0003684
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, usually low grade chondrosarcoma characterized by the presence of tumor cells with clear cytoplasm. It usually arises in the epiphyseal ends of long bones.","definition_xrefs":["NCIT:C6475"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone chondrosarcoma","termid":"MONDO:0000515"},{"relation_name":"is_a","term_name":"bone sarcoma","termid":"MONDO:0021054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"clear cell chondrosarcoma","secondary_identifiers":["ICDO:9242/3","DOID:5867","UMLS:C1266167","MEDGEN:226848"],"synonyms":[{"name":"clear cell chondrosarcoma","type":"exact"},{"name":"clear cell chondrosarcoma (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0003684","xrefs":{"Monarch":{"xref_id":"0003684"}}}


id: GO:0035654
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of a macromolecular complex between proteins of the AP-3 adaptor complex and proteins and/or lipoproteins that are going to be transported by a clathrin-coated vesicle. In some cases, the AP-3 complex is a heterotetrameric AP-type membrane coat adaptor complex that, in some organisms, links clathrin to the membrane surface of a vesicle.","definition_xrefs":["PMID:16162817","GOC:lb","PMID:12802059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clathrin-coated vesicle cargo loading","termid":"GO:0035652"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"clathrin-coated vesicle cargo loading, AP-3-mediated","synonyms":[{"name":"cargo loading into clathrin-coated vesicle, AP-3-mediated","type":"exact"}],"termid":"GO:0035654"}


id: PBO:0076341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptotagmin 9","termid":"PBO:0076341"}


id: PBO:0031629
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_rate_of_spore_germination","termid":"PBO:0031629"}


id: GO:1905018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of methionine-tRNA ligase activity.","definition_xrefs":["GOC:TermGenie","PMID:1665486","GO_REF:0000059"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of methionine-tRNA ligase activity (obsolete GO:1905018)","synonyms":[{"name":"regulation of L-methionine:tRNAMet ligase (AMP-forming)","type":"exact"},{"name":"regulation of MetRS activity","type":"exact"},{"name":"regulation of methionine translase activity","type":"exact"},{"name":"regulation of methionyl-tRNA synthetase activity","type":"exact"},{"name":"regulation of methionyl-transfer RNA synthetase activity","type":"exact"},{"name":"regulation of methionyl-transfer ribonucleate synthetase activity","type":"exact"},{"name":"regulation of methionyl-transfer ribonucleic acid synthetase activity","type":"exact"}],"termid":"GO:1905018"}


id: MONDO:0022513
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Atrophoderma of Pierini and Pasini is thought to possibly represent a late stage of morphea a type of localized scleroderma. Signs and symptoms ofatrophoderma of Pierini and Pasini include multiple oval, darkened (hyperpigmented) plaques in which tissue under the skin breaks downso that there is a depression (dent) within the skin. Some findings suggest that atrophoderma of Pierini and Pasini may be associated with B burgdorferi, a bacteria that causesLyme disease, in some cases.","definition_xrefs":["GARD:0005866"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"dermis disorder","termid":"MONDO:0021154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"atrophoderma of Pierini and Pasini","secondary_identifiers":["SCTID:711524008","GARD:5866","MEDGEN:854615","ICD10CM:L90.3","Orphanet:658810","UMLS:C3887897"],"synonyms":[{"name":"congenital atrophoderma of Pasini and Pierini","type":"related"},{"name":"idiopathic atrophoderma of Pasini and Pierini","type":"related"}],"termid":"MONDO:0022513","xrefs":{"Monarch":{"xref_id":"0022513"}}}


id: PBO:0079631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBE2Q2 pseudogene 1","termid":"PBO:0079631"}


id: SO:0002011
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variant that occurs within a gene but falls outside of all transcript features. This occurs when alternate transcripts of a gene do not share overlapping sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcript_variant","termid":"SO:0001576"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intragenic_variant","secondary_identifiers":["http://snpeff.sourceforge.net/SnpEff_manual.html"],"synonyms":[{"name":"Jannovar:intragenic_variant","type":"exact"},{"name":"intragenic variant","type":"exact"},{"name":"snpEff:INTRAGENIC","type":"exact"}],"termid":"SO:0002011"}


id: GO:0106193
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of inorganic cations and their chelates linked to the hydrolysis of a diphosphate.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activity acting on inorganic cations and their chelates linked to the hydrolysis of a diphosphate (obsolete GO:0106193)","termid":"GO:0106193"}


id: GO:1900818
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ochratoxin A.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified amino acid biosynthetic process","termid":"GO:0042398"},{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"},{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"},{"relation_name":"is_a","term_name":"ochratoxin A metabolic process","termid":"GO:1900816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"ochratoxin A biosynthetic process","synonyms":[{"name":"Ochratoxin A anabolism","type":"exact"},{"name":"Ochratoxin A biosynthesis","type":"exact"},{"name":"Ochratoxin A formation","type":"exact"},{"name":"Ochratoxin A synthesis","type":"exact"}],"termid":"GO:1900818"}


id: PBO:0111937
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulator of Heat Sensitivity","termid":"PBO:0111937"}


id: GO:0007224
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of activation of the transmembrane protein Smoothened.","definition_xrefs":["PMID:15205520","GOC:mah","PMID:15057936"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway","termid":"GO:0007166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"smoothened signaling pathway","secondary_identifiers":["Wikipedia:Hedgehog_signaling_pathway"],"synonyms":[{"name":"Shh signaling pathway","type":"related"},{"name":"Sonic hedgehog signaling pathway","type":"narrow"},{"name":"hedgehog signaling pathway","type":"exact"},{"name":"hh signaling pathway","type":"narrow"},{"name":"hh signalling pathway","type":"narrow"},{"name":"smoothened signalling pathway","type":"exact"}],"termid":"GO:0007224"}


id: PBO:0091524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidoreductase involved in NADPH regeneration","termid":"PBO:0091524"}


id: GO:0001321
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process of general metabolic decline that arises in dividing cells as they age, and alters cellular metabolism to cause a decline in cell function.","definition_xrefs":["GOC:mah","GOC:jh"],"gene_count":0,"genotype_count":0,"name":"obsolete age-dependent general metabolic decline involved in replicative cell aging (obsolete GO:0001321)","synonyms":[{"name":"age-dependent general metabolic decline during replicative cell ageing","type":"related"},{"name":"age-dependent general metabolic decline involved in replicative cell aging","type":"related"}],"termid":"GO:0001321"}


id: MONDO:0044310
data:
  {"annotated_genes":["SJAG_02340"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88668],"is_not":false,"summary":null,"term":"MONDO:0044310"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Diamond-Blackfan anemia","termid":"MONDO:0015253"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02340":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0002280"],"is_obsolete":false,"name":"Diamond-Blackfan anemia 17","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0111880","OMIM:617409","GARD:16228","UMLS:C4479428","MEDGEN:1373199"],"synonyms":[{"name":"DBA17","type":"related"},{"name":"Diamond-Blackfan anemia 17","type":"exact"}],"termid":"MONDO:0044310","terms_by_termid":{"MONDO:0044310":null},"xrefs":{"Monarch":{"xref_id":"0044310"}}}


id: FYPO:0008214
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of pre-mRNA measured in a cell during a cellular response to heat is lower than normal. Total pre-mRNA or a specific pre-mRNA may be affected.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during cellular response to heat","termid":"FYPO:0002287"},{"relation_name":"is_a","term_name":"decreased pre-mRNA level","termid":"FYPO:0002937"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0006551"],"is_obsolete":false,"name":"decreased pre-mRNA level during cellular response to heat","termid":"FYPO:0008214"}


id: _global:results_in_determination_of
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"p 'results in determination of' c if and only if p is a developmental process and c is a cell and p results in the state of c changing to be determined. Once a cell becomes determined, it becomes committed to differentiate down a particular pathway regardless of its environment.","direct_ancestors":[{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"},{"relation_name":"is_a","term_name":"results_in_developmental_progression_of","termid":"_global:results_in_developmental_progression_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"results_in_determination_of","secondary_identifiers":["GOREL:0001018","RO:0002349"],"termid":"_global:results_in_determination_of"}


id: GO:0052635
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: a C-20 gibberellin + 2-oxoglutarate + O2 = a C-20 2-beta-hydroxygibberellin + succinate + CO2. C-20 gibberellin refers to a gibberellin with twenty carbons.","definition_xrefs":["GOC:kad","PMID:12509528"],"gene_count":0,"genotype_count":0,"name":"obsolete C-20 gibberellin 2-beta-dioxygenase activity (obsolete GO:0052635)","synonyms":[{"name":"(C-20 gibberellin-1),2-oxoglutarate:oxygen oxidoreductase (2beta-hydroxylating)","type":"exact"},{"name":"C(20) gibberellin 2-oxidase activity","type":"exact"},{"name":"C-20 GA 2-oxidase activity","type":"exact"},{"name":"C-20 gibberellin 2-beta-hydroxylase activity","type":"exact"},{"name":"C-20 gibberellin 2-oxidase activity","type":"exact"},{"name":"C-20 gibberellin 2beta-dioxygenase activity","type":"exact"},{"name":"C-20 gibberellin 2beta-hydroxylase activity","type":"exact"}],"termid":"GO:0052635"}


id: PBO:0036101
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_binucleate_aseptate_cell_with_mitotic_cell_cycle_arrest_before_cell_separation","termid":"PBO:0036101"}


id: PBO:0053926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1224","termid":"PBO:0053926"}


id: PBO:0088994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lsm2-8 complex subunit Lsm5","termid":"PBO:0088994"}


id: PBO:0061696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin 214","termid":"PBO:0061696"}


id: MONDO:0006077
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hyperplasia that involves the adrenal medulla.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperplasia","termid":"MONDO:0005043"},{"relation_name":"is_a","term_name":"adrenal gland disorder","termid":"MONDO:0005495"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adrenal medullary hyperplasia","secondary_identifiers":["MEDGEN:231356","EFO:1000076","UMLS:C1332177","NCIT:C35838"],"synonyms":[{"name":"adrenal medulla hyperplasia","type":"exact"}],"termid":"MONDO:0006077","xrefs":{"Monarch":{"xref_id":"0006077"}}}


id: GO:0046078
data:
  {"annotated_genes":["SJAG_03771","SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71663,81284],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006226"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving dUMP, deoxyuridine (5'-)monophosphate (2'-deoxyuridine 5'-phosphate).","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside monophosphate metabolic process","termid":"GO:0009176"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleotide metabolic process","termid":"GO:0009219"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03771":null,"SJAG_04487":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"dUMP metabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"dUMP metabolism","type":"exact"}],"termid":"GO:0046078","terms_by_termid":{"GO:0006226":null}}


id: GO:1990486
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a fatty acid in the absence of oxygen. A fatty acid is any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.","definition_xrefs":["PMID:17329794","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid catabolic process","termid":"GO:0009062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"anaerobic fatty acid catabolic process","synonyms":[{"name":"anaerobic fatty acid degradation","type":"exact"}],"termid":"GO:1990486"}


id: GO:0072286
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephric connecting tubule over time, from its formation to the mature structure. The metanephric connecting tubule is a tubular segment of the metanephric nephron; it connects the distal convoluted tubule to the collecting duct in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"connecting tubule development","termid":"GO:0072027"},{"relation_name":"is_a","term_name":"metanephric nephron tubule development","termid":"GO:0072234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric connecting tubule development","synonyms":[{"name":"metanephric connecting duct development","type":"exact"}],"termid":"GO:0072286"}


id: GO:0050252
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acyl-CoA + retinol = CoA + retinyl ester.","definition_xrefs":["EC:2.3.1.76","MetaCyc:RETINOL-O-FATTY-ACYLTRANSFERASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"retinol O-fatty-acyltransferase activity","secondary_identifiers":["Reactome:R-HSA-2465919","Reactome:R-HSA-8848585","RHEA:11488"],"synonyms":[{"name":"acyl-CoA:retinol O-acyltransferase activity","type":"related"},{"name":"retinol acyltransferase activity","type":"related"},{"name":"retinol fatty-acyltransferase activity","type":"related"}],"termid":"GO:0050252"}


id: MONDO:0004165
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare dysgammaglobulinemia characterized by low or undetectable serum levels of immunoglobulin class D (IgD). It is an uncommon primary antibody deficiency. It is most likely an inherited immunodeficiency. It may be caused by decreased or inefficient production of IgD from progenitor B cells without any corresponding decreases in the other isotypes. Most affected persons are asymptomatic and do not appear to be at increased risk for infection.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"selective immunoglobulin deficiency disease","termid":"MONDO:0003739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"selective IgD deficiency disease","secondary_identifiers":["UMLS:C0398695","MEDGEN:96021","NCIT:C27144","DOID:7263","ICD9:279.03","SCTID:234541006"],"synonyms":[{"name":"selective IgD immunodeficiency","type":"exact"},{"name":"selective immunoglobulin D deficiency","type":"exact"}],"termid":"MONDO:0004165","xrefs":{"Monarch":{"xref_id":"0004165"}}}


id: GO:0003216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of a left cardiac atrium from unspecified parts.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac atrium formation","termid":"GO:0003210"},{"relation_name":"part_of","term_name":"cardiac left atrium morphogenesis","termid":"GO:0003212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac left atrium formation","termid":"GO:0003216"}


id: PBO:0073975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 22 member 31","termid":"PBO:0073975"}


id: GO:0034846
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: naphthyl-2-methylene-succinyl-CoA + H2O = naphthyl-2-hydroxymethyl-succinyl-CoA.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete naphthyl-2-methylene-succinyl-CoA lyase activity (obsolete GO:0034846)","termid":"GO:0034846"}


id: PBO:0077835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TP73 antisense RNA 3","termid":"PBO:0077835"}


id: PBO:0055605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3043","termid":"PBO:0055605"}


id: PBO:0026815
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_protein_binding_specificity","termid":"PBO:0026815"}


id: PR:Q9P7V6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A vacuolar protein sorting-associated protein 33A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03486","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting-associated protein 33 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1703.15c","secondary_identifiers":["UniProtKB:Q9P7V6"],"synonyms":[{"name":"Spom972h-VPS33A","type":"exact"}],"termid":"PR:Q9P7V6"}


id: PBO:0069790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1076, pseudogene","termid":"PBO:0069790"}


id: PBO:0038589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA dehydrogenase family member 8","termid":"PBO:0038589"}


id: MOD:00827
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-tyrosine residue and an L-cysteine residue by a thioester bond to form S-(L-tyrosyl)-L-cysteine.","definition_xrefs":["PubMed:11807079","RESID:AA0416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thioester crosslinked residues","termid":"MOD:00395"},{"relation_name":"is_a","term_name":"crosslinked residues with loss of water","termid":"MOD:00954"},{"relation_name":"is_a","term_name":"crosslinked L-tyrosine residue","termid":"MOD:02058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"S-(L-tyrosyl)-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-([(2S)-2-amino-3-(4-hydroxyphenyl)propanoyl]sulfanyl)propanoic acid","type":"exact"},{"name":"CROSSLNK Tyrosyl cysteine thioester (Cys-Tyr)","type":"exact"},{"name":"S-(L-tyrosyl)-L-cysteine","type":"exact"},{"name":"S-[2-amino-3-(4-hydoxyphenyl)propanoyl]cysteine","type":"exact"},{"name":"XLNK1TyrSCys","type":"exact"},{"name":"tyrosine cysteine thioester","type":"exact"}],"termid":"MOD:00827"}


id: GO:0002787
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of antibacterial peptide production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of antimicrobial peptide production","termid":"GO:0002785"},{"relation_name":"is_a","term_name":"regulation of antibacterial peptide production","termid":"GO:0002786"},{"relation_name":"is_a","term_name":"negative regulation of defense response to bacterium","termid":"GO:1900425"},{"relation_name":"negatively_regulates","term_name":"antibacterial peptide production","termid":"GO:0002778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of antibacterial peptide production","synonyms":[{"name":"down regulation of antibacterial peptide production","type":"exact"},{"name":"down-regulation of antibacterial peptide production","type":"exact"},{"name":"downregulation of antibacterial peptide production","type":"exact"},{"name":"inhibition of antibacterial peptide production","type":"narrow"}],"termid":"GO:0002787"}


id: MONDO:0001343
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any disease in which the causes of the disease is a perturbation of the kidney leading to its dysfunction.","definition_xrefs":["MONDO:patterns/disease_by_dysfunctional_structure"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney disorder","termid":"MONDO:0005240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"impaired renal function disease","secondary_identifiers":["ICD9:588.8","DOID:11705","ICD10CM:N25","UMLS:C0341677","ICD9:588.9","MEDGEN:574572","SCTID:197663003","ICD9:588.89"],"synonyms":[{"name":"disease of kidney","type":"broad"},{"name":"kidney disease","type":"broad"}],"termid":"MONDO:0001343","xrefs":{"Monarch":{"xref_id":"0001343"}}}


id: PBO:0000500
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.4.24.59","termid":"PBO:0000500"}


id: PBO:0045050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DLEC1 cilia and flagella associated protein","termid":"PBO:0045050"}


id: GO:0031445
data:
  {"annotated_genes":["SJAG_02723","SJAG_03255","SJAG_03664","SJAG_01511","SJAG_04369","SJAG_03624","SJAG_02342","SJAG_01599","SJAG_02622","SJAG_02990","SJAG_02381","SJAG_02592","SJAG_01867","SJAG_00142"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92695,100491],"is_not":false,"summary":null,"term":"GO:0031445"},{"annotations":[108625,79125],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061188"},{"annotations":[110471],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060906"},{"annotations":[100891],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031453"},{"annotations":[93072],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090053"},{"annotations":[96271,93073,112337],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090055"},{"annotations":[99108,102239],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090052"},{"annotations":[119784],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010964"},{"annotations":[120156,102240,93760,119785,99109],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902801"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, extent or location of heterochromatin formation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gene expression","termid":"GO:0010468"},{"relation_name":"is_a","term_name":"regulation of chromatin organization","termid":"GO:1902275"},{"relation_name":"regulates","term_name":"heterochromatin formation","termid":"GO:0031507"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00142":null,"SJAG_01511":null,"SJAG_01599":null,"SJAG_01867":null,"SJAG_02342":null,"SJAG_02381":null,"SJAG_02592":null,"SJAG_02622":null,"SJAG_02723":null,"SJAG_02990":null,"SJAG_03255":null,"SJAG_03624":null,"SJAG_03664":null,"SJAG_04369":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006325"],"is_obsolete":false,"name":"regulation of heterochromatin formation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"regulation of heterochromatin assembly","type":"exact"}],"termid":"GO:0031445","terms_by_termid":{"GO:0010964":null,"GO:0031445":null,"GO:0031453":null,"GO:0060906":null,"GO:0061188":null,"GO:0090052":null,"GO:0090053":null,"GO:0090055":null,"GO:1902801":null}}


id: MONDO:0957545
data:
  {"annotated_genes":["SJAG_01754"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88210],"is_not":false,"summary":null,"term":"MONDO:0957545"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial dilated cardiomyopathy","termid":"MONDO:0016333"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01754":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"cardiomyopathy, dilated, 2I","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1841321","UMLS:C5830685","OMIM:620462"],"termid":"MONDO:0957545","terms_by_termid":{"MONDO:0957545":null},"xrefs":{"Monarch":{"xref_id":"0957545"}}}


id: PBO:0017616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit Med6","termid":"PBO:0017616"}


id: PBO:0038939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADH5 pseudogene 3","termid":"PBO:0038939"}


id: FYPO:0006678
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sites at which the protein Rad52 (also called Rad22) accumulates is greater than normal during a cellular response to chromium ions.","definition_xrefs":["PMID:30148840","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased number of Rad52 foci during vegetative growth","termid":"FYPO:0000972"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased number of Rad52 foci during cellular response to chromium","synonyms":[{"name":"increased number of Rad22 foci during cellular response to chromium","type":"exact"},{"name":"increased number of Rad52 foci during cellular response to chromium during mitotic cell cycle","type":"related"},{"name":"increased number of Rad52 foci during cellular response to chromium during vegetative growth","type":"exact"},{"name":"increased number of Rad52 foci during cellular response to chromium ions","type":"exact"}],"termid":"FYPO:0006678"}


id: PBO:0080195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VENT homeobox pseudogene 3","termid":"PBO:0080195"}


id: GO:0072386
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of an organelle towards the plus end of a microtubule, mediated by motor proteins. This process begins with the attachment of an organelle to a microtubule, and ends when the organelle reaches its final destination.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle transport along microtubule","termid":"GO:0072384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"plus-end-directed organelle transport along microtubule","synonyms":[{"name":"microtubule plus-end-directed organelle distribution","type":"narrow"},{"name":"microtubule plus-end-directed organelle localization","type":"exact"}],"termid":"GO:0072386"}


id: FYPO:0006770
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which kinetochore disassembly is abnormal during prophase of meiosis I. Normally, outer kinetochore components delocalize from the centromere during bouquet formation in meiotic prophase I.","definition_xrefs":["PMID:27611693","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiosis I","termid":"FYPO:0003603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal kinetochore disassembly during meiotic prophase I","synonyms":[{"name":"abnormal kinetochore disassembly during prophase I","type":"exact"},{"name":"abnormal kinetochore disassembly during prophase of meiosis I","type":"exact"},{"name":"defective kinetochore disassembly during meiotic prophase I","type":"exact"}],"termid":"FYPO:0006770"}


id: PBO:0080562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WBP11 pseudogene 2","termid":"PBO:0080562"}


id: PBO:0065905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rabaptin, RAB GTPase binding effector protein 1","termid":"PBO:0065905"}


id: GO:0061194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the taste bud are generated and organized. The taste bud is a specialized area of the tongue that contains taste receptors.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory organ morphogenesis","termid":"GO:0090596"},{"relation_name":"part_of","term_name":"tongue morphogenesis","termid":"GO:0043587"},{"relation_name":"part_of","term_name":"taste bud development","termid":"GO:0061193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"taste bud morphogenesis","termid":"GO:0061194"}


id: PR:Q1MTQ0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- brl1 gene.","definition_xrefs":["UniProtKB:Q1MTQ0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 ubiquitin-protein ligase brl1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1919.15","synonyms":[{"name":"BRE1-like protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RING finger protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-brl1","type":"exact"}],"termid":"PR:Q1MTQ0"}


id: PBO:0074741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 101A","termid":"PBO:0074741"}


id: PBO:0071587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 4","termid":"PBO:0071587"}


id: FYPO:0000528
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which pexophagy begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal metabolic process","termid":"FYPO:0000860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"delayed onset of peroxisome degradation","synonyms":[{"name":"delayed onset of pexophagy","type":"exact"},{"name":"delayed peroxisome degradation","type":"exact"},{"name":"pexophagy: delayed","type":"related"}],"termid":"FYPO:0000528"}


id: GO:0043804
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-formimidoylglycine => H2O + imidazol-4-one.","definition_xrefs":["RHEA:24935","PMID:27286964"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides","termid":"GO:0016812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787","GO:0016810"],"is_obsolete":false,"name":"imidazolone hydrolase activity","termid":"GO:0043804"}


id: PBO:0074386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMG7 antisense RNA 1","termid":"PBO:0074386"}


id: GO:0002716
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of natural killer cell mediated immunity.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lymphocyte mediated immunity","termid":"GO:0002707"},{"relation_name":"is_a","term_name":"regulation of natural killer cell mediated immunity","termid":"GO:0002715"},{"relation_name":"is_a","term_name":"negative regulation of innate immune response","termid":"GO:0045824"},{"relation_name":"negatively_regulates","term_name":"natural killer cell mediated immunity","termid":"GO:0002228"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of natural killer cell mediated immunity","secondary_identifiers":["GO:0030102"],"synonyms":[{"name":"down regulation of natural killer cell mediated immunity","type":"exact"},{"name":"down-regulation of natural killer cell mediated immunity","type":"exact"},{"name":"downregulation of natural killer cell mediated immunity","type":"exact"},{"name":"inhibition of natural killer cell mediated immunity","type":"narrow"},{"name":"negative regulation of NK cell activity","type":"related"},{"name":"negative regulation of NK cell mediated immunity","type":"exact"},{"name":"negative regulation of natural killer cell activity","type":"related"}],"termid":"GO:0002716"}


id: GO:0102755
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: gibberellin A15 (closed lactone form) + O2 + 2-oxoglutarate = gibberellin A37 (closed lactone form) + succinate + carbon dioxide.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete gibberellin-15(closed lactone form),2-oxoglutarate:oxygen oxidoreductase (3beta-hydroxylating) activity (obsolete GO:0102755)","termid":"GO:0102755"}


id: PBO:0110391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTMR9 pseudogene 1","termid":"PBO:0110391"}


id: PBO:0001324
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.3.2.8","termid":"PBO:0001324"}


id: PBO:0040355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase membrane subunit g pseudogene 4","termid":"PBO:0040355"}


id: GO:0045300
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 H+ + O2 + octadecanoyl-[ACP] + 2 reduced [2Fe-2S]-[ferredoxin] = (9Z)-octadecenoyl-[ACP] + 2 H2O + 2 oxidized [2Fe-2S]-[ferredoxin].","definition_xrefs":["RHEA:11776"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"stearoyl-[ACP] desaturase activity","secondary_identifiers":["EC:1.14.19.2","MetaCyc:RXN-7903","KEGG_REACTION:R03370"],"synonyms":[{"name":"acyl-[acyl-carrier-protein] desaturase activity","type":"related"},{"name":"acyl-acyl-carrier-protein desaturase activity","type":"related"},{"name":"acyl-acyl-carrier-protein, hydrogen-donor:oxygen oxidoreductase activity","type":"related"},{"name":"stearyl acyl carrier protein desaturase activity","type":"related"},{"name":"stearyl-ACP desaturase activity","type":"related"}],"termid":"GO:0045300"}


id: SO:0001557
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant which causes gain of polypeptide function with respect to a reference sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_function_variant","termid":"SO:0001554"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polypeptide_gain_of_function_variant","synonyms":[{"name":"polypeptide gain of function variant","type":"exact"}],"termid":"SO:0001557"}


id: PBO:0064963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 15","termid":"PBO:0064963"}


id: PR:O42951
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- abz2 gene.","definition_xrefs":["UniProtKB:O42951","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminodeoxychorismate lyase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19G7.02","synonyms":[{"name":"4-amino-4-deoxychorismate lyase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ADC lyase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ADCL (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-abz2","type":"exact"}],"termid":"PR:O42951"}


id: FYPO:0003589
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the increase in small deletions or duplications (\\\"replication slippage\\\") that normally results from processing arrested replication forks is diminished or abolished.","definition_xrefs":["PomBase:mah","PMID:23093942"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal replication fork processing","termid":"FYPO:0003586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0000293","FYPO:0001985"],"is_obsolete":false,"name":"decreased replication slippage during replication fork processing","synonyms":[{"name":"decreased replication slippage during replication fork processing during mitotic cell cycle","type":"related"},{"name":"decreased replication slippage during replication fork processing during vegetative growth","type":"exact"},{"name":"reduced replication slippage during replication fork processing","type":"exact"}],"termid":"FYPO:0003589"}


id: PBO:0065190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein Z, vitamin K dependent plasma glycoprotein","termid":"PBO:0065190"}


id: MONDO:0005149
data:
  {"annotated_genes":["SJAG_02977"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88765],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013458"}]},"cv_name":"mondo","definition":"Increased pressure within the pulmonary circulation due to lung or heart disorder.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypertensive disorder","termid":"MONDO:0005044"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02977":null},"genotype_count":0,"is_obsolete":false,"name":"pulmonary hypertension","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0020542","MEDGEN:9376","SCTID:70995007","DOID:6432","icd11.foundation:1496633964","MedDRA:10037400","MESH:D006976"],"termid":"MONDO:0005149","terms_by_termid":{"MONDO:0013458":null},"xrefs":{"Monarch":{"xref_id":"0005149"}}}


id: PBO:0087730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the SF3a splicing factor complex; required for spliceosome assembly; acts after the formation of the U1 snRNP-pre-mRNA complex","termid":"PBO:0087730"}


id: GO:0003817
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage of component factor B (Arg-Lys) when in complex with C3b or with cobra venom factor (CVF).","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete complement factor D activity (obsolete GO:0003817)","synonyms":[{"name":"C3 convertase activator activity","type":"related"},{"name":"C3 proactivator convertase activity","type":"related"},{"name":"adipsin","type":"exact"},{"name":"complement factor D activity","type":"exact"},{"name":"factor D","type":"related"},{"name":"factor D (complement)","type":"related"},{"name":"properdin factor D esterase activity","type":"related"}],"termid":"GO:0003817"}


id: MONDO:0019279
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete alopecia (obsolete MONDO:0019279)","termid":"MONDO:0019279","xrefs":{"Monarch":{"xref_id":"0019279"}}}


id: GO:0102739
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: gibberellin A36 + O2 + 2-oxoglutarate = H+ + gibberellin A4 + succinate + 2 carbon dioxide.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete (gibberellin-36), 2-oxoglutarate:oxygen oxidoreductase activity (obsolete GO:0102739)","termid":"GO:0102739"}


id: PBO:0080728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WW and C2 domain containing 2","termid":"PBO:0080728"}


id: GO:0000459
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Exonucleolytic digestion of a pre-rRNA molecule in the process to generate a mature rRNA molecule.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete exonucleolytic trimming involved in rRNA processing (obsolete GO:0000459)","synonyms":[{"name":"exonucleolytic trimming during rRNA processing","type":"related"}],"termid":"GO:0000459"}


id: FYPO:0007587
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the endosome(s) is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during vegetative growth","termid":"FYPO:0000443"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal protein localization to endosome","synonyms":[{"name":"abnormal protein localisation to endosome","type":"exact"},{"name":"abnormal protein localization to endosome during mitotic cell cycle","type":"related"},{"name":"abnormal protein localization to endosome during vegetative growth","type":"exact"},{"name":"abnormal protein targeting to endosome","type":"related"}],"termid":"FYPO:0007587"}


id: PBO:0087527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of MRX complex with Mre11p and Xrs2p; complex is involved in processing double-strand DNA breaks in vegetative cells, initiation of meiotic DSBs, telomere maintenance, and nonhomologous end joining; forms nuclear foci upon DNA replication stress","termid":"PBO:0087527"}


id: GO:1990440
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of an endoplasmic reticulum stress.","definition_xrefs":["GOC:bf","PMID:21113145","GOC:PARL"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress (obsolete GO:1990440)","synonyms":[{"name":"ER stress-induced upregulation of transcription","type":"broad"},{"name":"activation of transcription from RNA polymerase II promoter in response to ER stress","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter in response to ER stress","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress","type":"exact"},{"name":"up-regulation of transcription induced by ER stress","type":"broad"},{"name":"upregulation of Pol II transcription induced by ER stress","type":"exact"},{"name":"upregulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress","type":"exact"}],"termid":"GO:1990440"}


id: PBO:0041563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 19 open reading frame 84","termid":"PBO:0041563"}


id: PBO:0040640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic leucine zipper ATF-like transcription factor","termid":"PBO:0040640"}


id: PBO:0108581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo repeat protein, human ATXN10 ortholog","termid":"PBO:0108581"}


id: PBO:0075736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRP14 pseudogene 4","termid":"PBO:0075736"}


id: _global:promoter_of
data:
  {"annotation_feature_type":"gene","cv_name":"SO_feature_relations","definition":"Relation between a promoter and a gene.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"promoter_of","termid":"_global:promoter_of"}


id: PBO:0018079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron-sulfur cluster assembly protein Isa2","termid":"PBO:0018079"}


id: PBO:0082900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cyclin-like protein that interacts with Pho85p; has sequence similarity to G1 cyclins PCL1 and PCL2","termid":"PBO:0082900"}


id: PATO:0002299
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A cylindrical shape that is hollow.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cylindrical","termid":"PATO:0001873"},{"relation_name":"is_a","term_name":"hollow","termid":"PATO:0002078"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubular","synonyms":[{"name":"tube like","type":"exact"},{"name":"tube-shaped","type":"exact"},{"name":"tubulate","type":"exact"}],"termid":"PATO:0002299"}


id: PBO:0053351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 242","termid":"PBO:0053351"}


id: MONDO:0007284
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cataract (disease) in which the cause of the disease is a mutation in the CRYGS gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"early-onset non-syndromic cataract","termid":"MONDO:0011060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cataract 20 multiple types","secondary_identifiers":["MEDGEN:101117","DOID:0110240","OMIM:116100","UMLS:C0524524"],"synonyms":[{"name":"CRYGS cataract (disease)","type":"exact"},{"name":"CTRCT20","type":"exact"},{"name":"cataract (disease) caused by mutation in CRYGS","type":"exact"},{"name":"cataract 20, multiple types","type":"related"}],"termid":"MONDO:0007284","xrefs":{"Monarch":{"xref_id":"0007284"}}}


id: GO:0035342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of inosine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of purine nucleoside transport","termid":"GO:0032248"},{"relation_name":"is_a","term_name":"regulation of inosine transport","termid":"GO:0035341"},{"relation_name":"positively_regulates","term_name":"inosine transport","termid":"GO:0035340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of inosine transport","synonyms":[{"name":"positive regulation of hypoxanthine riboside transport","type":"exact"}],"termid":"GO:0035342"}


id: GO:0008991
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage of a signal peptide from a protein precursor by a serine endopeptidase mechanism.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete serine-type signal peptidase activity (obsolete GO:0008991)","synonyms":[{"name":"serine-type signal peptidase activity","type":"exact"}],"termid":"GO:0008991"}


id: GO:0150147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of a cell-cell junction into its constituent components.","definition_xrefs":["PMID:25490267","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell junction organization","termid":"GO:0045216"},{"relation_name":"is_a","term_name":"cell junction disassembly","termid":"GO:0150146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell-cell junction disassembly","termid":"GO:0150147"}


id: PBO:0071301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 24","termid":"PBO:0071301"}


id: PBO:0069254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 509, pseudogene","termid":"PBO:0069254"}


id: PBO:0030740
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-pear-shaped_cell_during_nitrogen_starvation","termid":"PBO:0030740"}


id: GO:0047743
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: chlordecone alcohol + NADP+ = chlordecone + H+ + NADPH.","definition_xrefs":["EC:1.1.1.225","RHEA:14401"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"chlordecone reductase activity","secondary_identifiers":["KEGG_REACTION:R03716","MetaCyc:CHLORDECONE-REDUCTASE-RXN"],"synonyms":[{"name":"CDR activity","type":"related"},{"name":"chlordecone-alcohol:NADP+ 2-oxidoreductase activity","type":"related"}],"termid":"GO:0047743"}


id: MONDO:0008917
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Heart defects limb shortening is an association disorder combining congenital heart malformation and skeletal dysplasia (including coronal clefting of the vertebral bodies and short limbs). It has been described only once in the literature, in two male sibs from Kuwaiti first-cousins. The clinical and radiological features of these patients were reported as a distinct cardioskeletal syndrome.","definition_xrefs":["Orphanet:1354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital heart disease","termid":"MONDO:0005453"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005267"],"is_obsolete":false,"name":"heart defects-limb shortening syndrome","secondary_identifiers":["OMIM:212135","GARD:2613","MEDGEN:349142","MESH:C535850","SCTID:721009008","UMLS:C1859327"],"synonyms":[{"name":"cardioskeletal syndrome kuwaiti type","type":"related"},{"name":"cardioskeletal syndrome, KUWAITI type","type":"related"},{"name":"heart defect and limb shortening syndrome","type":"exact"},{"name":"heart defects and limb shortening","type":"related"}],"termid":"MONDO:0008917","xrefs":{"Monarch":{"xref_id":"0008917"}}}


id: GO:0140955
data:
  {"annotated_genes":["SJAG_02873"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[65287],"is_not":false,"summary":null,"term":"GO:0140955"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysyl36-[histone H3] + 3 S-adenosyl-L-methionine = 3 H+ + N6,N6,N6-trimethyl-L-lysyl36-[histone H3] + 3 S-adenosyl-L-homocysteine. This reaction is the successive addition of three methyl groups to the lysine residue at position 36 of histone H3, producing histone H3K36me3.","definition_xrefs":["RHEA:60324"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3K36 methyltransferase activity","termid":"GO:0046975"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02873":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0140096","GO:0003674","GO:0008276","GO:0016741","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"histone H3K36 trimethyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["EC:2.1.1.359"],"synonyms":[{"name":"histone H3-K36 trimethylation","type":"broad"},{"name":"histone H3K36 mono/di/trimethylase activity","type":"exact"},{"name":"histone H3K36 trimethylase activity","type":"exact"},{"name":"histone H3K36 trimethylation","type":"broad"},{"name":"histone lysine N-trimethyltransferase activity (H3-K36 specific)","type":"exact"}],"termid":"GO:0140955","terms_by_termid":{"GO:0140955":null}}


id: PBO:0072757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S100A11 pseudogene 7","termid":"PBO:0072757"}


id: PATO:0000760
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A behavioral quality of a process inhering in a bearer by virtue of the bearer's exhibiting increased activity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"behavioural active","termid":"PATO:0001707"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased behavioural activity","synonyms":[{"name":"hyperactive","type":"exact"}],"termid":"PATO:0000760"}


id: MONDO:0700147
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm that affects dogs, characterized by the presence of malignant cells with morphologic and immunophenotypic characteristics similar to those seen in mature histiocytes.","definition_xrefs":["NCIT:C128125"],"direct_ancestors":[{"relation_name":"is_a","term_name":"canine neoplasm","termid":"MONDO:0700139"},{"relation_name":"is_a","term_name":"hematologic disorder, non-human animal","termid":"MONDO:1011319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canine histiocytic sarcoma","termid":"MONDO:0700147","xrefs":{"Monarch":{"xref_id":"0700147"}}}


id: PBO:0049498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A clustered histone 5, pseudogene","termid":"PBO:0049498"}


id: PBO:0030792
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_spore_with_normal_morphology","termid":"PBO:0030792"}


id: MONDO:0006406
data:
  {"annotated_genes":["SJAG_03689"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88189],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011014"}]},"cv_name":"mondo","definition":"A malignant epithelial neoplasm characterized by the presence of spindle cells and anaplastic morphologic features. Giant cells and a sarcomatous component may also be present.","definition_xrefs":["NCIT:C27004"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"squamous cell carcinoma","termid":"MONDO:0005096"},{"relation_name":"is_a","term_name":"carcinoma","termid":"MONDO:0004993"},{"relation_name":"is_a","term_name":"anaplastic cancer","termid":"MONDO:0020633"},{"relation_name":"is_a","term_name":"malignant spindle cell neoplasm","termid":"MONDO:0020663"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03689":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"sarcomatoid carcinoma","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICDO:8033/3","MEDGEN:60009","UMLS:C0205697","EFO:1000520","ICDO:8032/3","DOID:4015"],"synonyms":[{"name":"carcinoma, spindle cell, malignant","type":"exact"},{"name":"pseudosarcomatous carcinoma","type":"exact"},{"name":"sarcomatoid carcinoma","type":"exact"},{"name":"spindle cell carcinoma","type":"exact"},{"name":"spindle cell carcinoma (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0006406","terms_by_termid":{"MONDO:0011014":null},"xrefs":{"Monarch":{"xref_id":"0006406"}}}


id: PR:Q10303
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tubulin-specific chaperone cofactor E-like protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00995","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell polarity protein alp21 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22H10.10","secondary_identifiers":["UniProtKB:Q10303"],"synonyms":[{"name":"Spom972h-TBCEL","type":"exact"},{"name":"altered polarity protein 21 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"suppressor of tsm one protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10303"}


id: PR:O74761
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA primase large subunit that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10537:SF0","OMA:SCHPO03657","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA primase large subunit (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17D11.06","secondary_identifiers":["UniProtKB:O74761"],"synonyms":[{"name":"Spom972h-PRIM2","type":"exact"}],"termid":"PR:O74761"}


id: GO:0046640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of alpha-beta T cell proliferation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell proliferation","termid":"GO:0042129"},{"relation_name":"is_a","term_name":"regulation of alpha-beta T cell activation","termid":"GO:0046634"},{"relation_name":"regulates","term_name":"alpha-beta T cell proliferation","termid":"GO:0046633"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of alpha-beta T cell proliferation","synonyms":[{"name":"regulation of alpha-beta T lymphocyte proliferation","type":"exact"},{"name":"regulation of alpha-beta T-cell proliferation","type":"exact"},{"name":"regulation of alpha-beta T-lymphocyte proliferation","type":"exact"}],"termid":"GO:0046640"}


id: PBO:0090143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor","termid":"PBO:0090143"}


id: PBO:0116418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein, human WDR7 ortholog, implicated vacuolar acidification, autophagy, or vacuole localization","termid":"PBO:0116418"}


id: GO:0045343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class I.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of macromolecule biosynthetic process","termid":"GO:0010556"},{"relation_name":"regulates","term_name":"MHC class I biosynthetic process","termid":"GO:0045341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of MHC class I biosynthetic process","synonyms":[{"name":"regulation of MHC class I anabolism","type":"exact"},{"name":"regulation of MHC class I biosynthesis","type":"exact"},{"name":"regulation of MHC class I formation","type":"exact"},{"name":"regulation of MHC class I synthesis","type":"exact"},{"name":"regulation of major histocompatibility complex class I biosynthesis","type":"exact"},{"name":"regulation of major histocompatibility complex class I biosynthetic process","type":"exact"}],"termid":"GO:0045343"}


id: MOD:00852
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a carboxamido group with a carboxyl group labeled with one (18)O.","definition_xrefs":["Unimod:366","PubMed:8382902"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(18)O labeled deamidated residue","termid":"MOD:00851"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1x(18)O labeled deamidated residue","termid":"MOD:00852"}


id: MONDO:0019150
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Familial restrictive cardiomyopathy is a genetic form of heart disease, in which the heart muscle is stiff and cannot fully relax after each contraction. Impaired muscle relaxation causes blood to back up in the atria and lungs, which reduces the amount of blood in the ventricles.","gene_count":0,"genotype_count":0,"name":"obsolete familial isolated restrictive cardiomyopathy (obsolete MONDO:0019150)","secondary_identifiers":["Orphanet:75249"],"synonyms":[{"name":"familial or idiopathic restrictive cardiomyopathy","type":"exact"}],"termid":"MONDO:0019150","xrefs":{"Monarch":{"xref_id":"0019150"}}}


id: MONDO:0958115
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"combined immunodeficiency","termid":"MONDO:0015131"},{"relation_name":"is_a","term_name":"hyper-IgE syndrome","termid":"MONDO:0018037"},{"relation_name":"is_a","term_name":"bent bone dysplasia","termid":"MONDO:0019698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"autosomal recessive combined immunodeficiency due to complete IL6ST deficiency","secondary_identifiers":["MEDGEN:1864006","Orphanet:656283","UMLS:C5925103"],"termid":"MONDO:0958115","xrefs":{"Monarch":{"xref_id":"0958115"}}}


id: GO:0110160
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of the cell cycle process in which the distance is lengthened between poles of the mitotic spindle during mitotic prophase (spindle phase one).","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitotic spindle formation (spindle phase one)","termid":"GO:0110159"},{"relation_name":"is_a","term_name":"negative regulation of spindle assembly","termid":"GO:1905831"},{"relation_name":"negatively_regulates","term_name":"mitotic spindle formation (spindle phase one)","termid":"GO:0061804"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"negatively_regulates","termid":"GO:0000226"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0007010","GO:0000226","GO:0008150","GO:0007049","GO:0044085"],"is_obsolete":false,"name":"negative regulation of mitotic spindle formation (spindle phase one)","termid":"GO:0110160"}


id: PBO:0056548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanin concentrating hormone receptor 2","termid":"PBO:0056548"}


id: PBO:0070826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13a pseudogene 5","termid":"PBO:0070826"}


id: MOD:01075
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a mercury atom or a cluster containing mercury for hydrogen atoms, or that coordinates a mercury ion.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal or metal cluster containing modified residue","termid":"MOD:00698"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mercury containing modified residue","synonyms":[{"name":"HgRes","type":"exact"}],"termid":"MOD:01075"}


id: GO:0000115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A cell cycle process that regulates transcription such that the target genes are transcribed as part of the S phase of the mitotic cell cycle.","definition_xrefs":["GOC:tb","GOC:dph","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription involved in S phase of mitotic cell cycle (obsolete GO:0000115)","synonyms":[{"name":"S-phase-specific transcription in mitotic cell cycle","type":"related"},{"name":"S-specific transcription in mitotic cell cycle","type":"exact"},{"name":"regulation of transcription from RNA polymerase II promoter during S-phase of mitotic cell cycle","type":"related"},{"name":"regulation of transcription involved in S phase of mitotic cell cycle","type":"exact"},{"name":"regulation of transcription involved in S-phase of mitotic cell cycle","type":"exact"}],"termid":"GO:0000115"}


id: PR:Q9UR06
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mmf2 gene.","definition_xrefs":["UniProtKB:Q9UR06","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein mmf2, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1039.10","synonyms":[{"name":"Spom972h-mmf2","type":"exact"},{"name":"maintenance of mitochondrial function 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UR06"}


id: GO:1905211
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of fibroblast chemotaxis.","definition_xrefs":["PMID:8760137","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell migration","termid":"GO:0030336"},{"relation_name":"is_a","term_name":"negative regulation of chemotaxis","termid":"GO:0050922"},{"relation_name":"is_a","term_name":"regulation of fibroblast chemotaxis","termid":"GO:1905210"},{"relation_name":"negatively_regulates","term_name":"fibroblast chemotaxis","termid":"GO:1990956"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of fibroblast chemotaxis","synonyms":[{"name":"down regulation of fibroblast chemotaxis","type":"exact"},{"name":"down-regulation of fibroblast chemotaxis","type":"exact"},{"name":"downregulation of fibroblast chemotaxis","type":"exact"},{"name":"inhibition of fibroblast chemotaxis","type":"narrow"}],"termid":"GO:1905211"}


id: PBO:0087453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of a complex with Ctf8p; shares some subunits with Replication Factor C and is required for sister chromatid cohesion; may have overlapping functions with Rad24p in the DNA damage replication checkpoint","termid":"PBO:0087453"}


id: MONDO:0008697
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete acetophenetidin sensitivity (obsolete MONDO:0008697)","secondary_identifiers":["OMIM:200300"],"synonyms":[{"name":"Acetophenetidin sensitivity","type":"exact"}],"termid":"MONDO:0008697","xrefs":{"Monarch":{"xref_id":"0008697"}}}


id: PBO:0085177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"One of four subunits of the ESCRT-III complex; forms an endosomal sorting complex required for transport III (ESCRT-III) subcomplex with Did4p; involved in the sorting of transmembrane proteins into the multivesicular body (MVB) pathway","termid":"PBO:0085177"}


id: PBO:0028104
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cell_population_growth_on_galactose_carbon_source","termid":"PBO:0028104"}


id: PBO:0063394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDCD6IP pseudogene 1","termid":"PBO:0063394"}


id: PBO:0068842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 80, pseudogene","termid":"PBO:0068842"}


id: PBO:0064877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory subunit 36","termid":"PBO:0064877"}


id: PBO:0054617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2022","termid":"PBO:0054617"}


id: PBO:0112563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EST1 family protein, implicated in NMD","termid":"PBO:0112563"}


id: PBO:0002905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cofilin/tropomyosin family, drebrin ortholog Abp1","termid":"PBO:0002905"}


id: GO:0042356
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-6-deoxy-D-mannose + NAD(P)+ = GDP-4-dehydro-6-deoxy-D-mannose + NAD(P)H + H+. In the reverse reaction, a mixture of GDP-D-rhamnose and its C-4 epimer is formed.","definition_xrefs":["EC:1.1.1.187"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"GDP-4-dehydro-D-rhamnose reductase activity","synonyms":[{"name":"GDP-4-keto-6-deoxy-D-mannose reductase activity","type":"related"},{"name":"GDP-4-keto-D-rhamnose reductase activity","type":"related"},{"name":"GDP-6-deoxy-D-mannose:NAD(P)+ 4-oxidoreductase activity","type":"related"},{"name":"guanosine diphosphate-4-keto-D-rhamnose reductase activity","type":"related"}],"termid":"GO:0042356"}


id: GO:2001197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any basement membrane assembly that is involved in embryonic body morphogenesis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly involved in morphogenesis","termid":"GO:0010927"},{"relation_name":"is_a","term_name":"basement membrane assembly","termid":"GO:0070831"},{"relation_name":"part_of","term_name":"embryonic body morphogenesis","termid":"GO:0010172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"basement membrane assembly involved in embryonic body morphogenesis","termid":"GO:2001197"}


id: PBO:0081957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZP3 pseudogene 1","termid":"PBO:0081957"}


id: MONDO:1012045
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cerebellar cortical atrophy, non-human animal","termid":"MONDO:1011836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebellar cortical atrophy, dog","secondary_identifiers":["OMIA:000177-9615"],"termid":"MONDO:1012045","xrefs":{"Monarch":{"xref_id":"1012045"}}}


id: SO:0001595
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant which causes a disruption of the translational reading frame, by shifting two bases backward.","direct_ancestors":[{"relation_name":"is_a","term_name":"frameshift_variant","termid":"SO:0001589"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plus_2_frameshift_variant","synonyms":[{"name":"+2 frameshift variant","type":"exact"},{"name":"plus 2 frameshift variant","type":"exact"}],"termid":"SO:0001595"}


id: MOD:01585
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-serine residue and a glycine residue by an ester bond to form O-glycyl-L-serine.","definition_xrefs":["RESID:AA0495","PubMed:17502423"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ester crosslinked residues","termid":"MOD:00885"},{"relation_name":"is_a","term_name":"crosslinked residues with loss of water","termid":"MOD:00954"},{"relation_name":"is_a","term_name":"crosslinked glycine residue","termid":"MOD:02047"},{"relation_name":"is_a","term_name":"crosslinked L-serine residue","termid":"MOD:02055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-glycyl-L-serine","synonyms":[{"name":"(2S)-2-amino-3-[(aminoacetyl)oxy]propanoic acid","type":"exact"},{"name":"CROSSLNK Glycyl serine ester (Gly-Ser) (interchain with S-...)","type":"exact"},{"name":"CROSSLNK Glycyl serine ester (Ser-Gly) (interchain with G-...)","type":"exact"},{"name":"O-(glycyl)-L-serine","type":"exact"},{"name":"O3-(aminoacetyl)serine","type":"exact"},{"name":"serine glycinate ester","type":"exact"}],"termid":"MOD:01585"}


id: GO:0048174
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that decreases short-term neuronal synaptic plasticity, the ability of neuronal synapses to change in the short-term as circumstances require. Short-term neuronal synaptic plasticity generally involves increasing or decreasing synaptic sensitivity.","definition_xrefs":["GOC:jid","PMID:11891290"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of short-term neuronal synaptic plasticity","termid":"GO:0048172"},{"relation_name":"is_a","term_name":"negative regulation of neurogenesis","termid":"GO:0050768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of short-term neuronal synaptic plasticity","synonyms":[{"name":"down regulation of short-term neuronal synaptic plasticity","type":"exact"},{"name":"down-regulation of short-term neuronal synaptic plasticity","type":"exact"},{"name":"downregulation of short-term neuronal synaptic plasticity","type":"exact"},{"name":"inhibition of short-term neuronal synaptic plasticity","type":"narrow"}],"termid":"GO:0048174"}


id: MONDO:0054733
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 29","secondary_identifiers":["OMIM:618091","UMLS:C4748142","MEDGEN:1648499","DOID:0111930"],"synonyms":[{"name":"SPGF29","type":"related"},{"name":"spermatogenic failure 29","type":"exact"}],"termid":"MONDO:0054733","xrefs":{"Monarch":{"xref_id":"0054733"}}}


id: MONDO:0005859
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The most common form of leishmaniasis that is transmitted through the bite of female phlebotomine sand flies or after exposure to leishmania parasites. It is characterized by skin lesions at the site of insect bite which typically develop within weeks or months after exposure. The lesions typically progress from small papules to open sores with raised borders and central ulcers which can be covered with scales or crust.","definition_xrefs":["NCIT:C34769"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leishmaniasis","termid":"MONDO:0011989"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucocutaneous leishmaniasis","secondary_identifiers":["UMLS:C1328252","icd11.foundation:1942095878","MEDGEN:233065","ICD9:085.5","ICD10CM:B55.2","DOID:9155","MESH:D007897","EFO:0007379"],"synonyms":[{"name":"American cutaneous leishmaniasis","type":"exact"},{"name":"American mucocutaneous leishmaniasis","type":"exact"},{"name":"New World cutaneous leishmaniasis","type":"exact"},{"name":"cutaneous leishmaniasis, American","type":"exact"},{"name":"mucocutaneous leishmaniasis, (American)","type":"exact"},{"name":"mucocutaneous leishmaniasis, American","type":"exact"}],"termid":"MONDO:0005859","xrefs":{"Monarch":{"xref_id":"0005859"}}}


id: RO:0002517
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of has start sequence","direct_ancestors":[{"relation_name":"is_a","term_name":"is_subsequence_of","termid":"RO:0002525"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_start_sequence_of","termid":"RO:0002517"}


id: GO:0043840
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-keto-4-methylthiobutyrate + L-phenylalanine = phenylpyruvate + L-methionine.","definition_xrefs":["PMID:12670965"],"gene_count":0,"genotype_count":0,"name":"obsolete branched-chain amino acid:2-keto-4-methylthiobutyrate aminotransferase activity (obsolete GO:0043840)","synonyms":[{"name":"BCAT","type":"related"},{"name":"branched chain amino acid:2-keto-4-methylthiobutyrate aminotransferase activity","type":"exact"},{"name":"branched-chain amino acid aminotransferase","type":"broad"},{"name":"branched-chain-amino-acid:2-keto-4-methylthiobutyrate aminotransferase activity","type":"exact"}],"termid":"GO:0043840"}


id: PBO:0001257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor Hsr1","termid":"PBO:0001257"}


id: PBO:0068499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 84, pseudogene","termid":"PBO:0068499"}


id: PBO:0000851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy associated protein kinase activator Atg17","termid":"PBO:0000851"}


id: PBO:0089821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase I general transcription initiation factor subunit Rrn7","termid":"PBO:0089821"}


id: MONDO:0003537
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm of lymphoblasts committed to the T-cell lineage, typically composed of small to medium-sized blast cells. When the neoplasm involves predominantly the bone marrow and the peripheral blood, it is called T acute lymphoblastic leukemia. When it involves nodal or extranodal sites it is called T lymphoblastic lymphoma. (WHO, 2001)","definition_xrefs":["NCIT:C8694"],"direct_ancestors":[{"relation_name":"is_a","term_name":"precursor lymphoblastic lymphoma/leukemia","termid":"MONDO:0003538"},{"relation_name":"is_a","term_name":"T-cell and NK-cell neoplasm","termid":"MONDO:0024615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"precursor T-lymphoblastic lymphoma/leukemia","secondary_identifiers":["MEDGEN:224897","ICDO:9837/3","UMLS:C1301359","DOID:5599"],"synonyms":[{"name":"T lymphoblastic leukemia/lymphoma","type":"exact"},{"name":"precursor T lymphoblastic leukemia/lymphoma","type":"exact"},{"name":"precursor T lymphoblastic lymphoma/leukemia","type":"exact"},{"name":"precursor T-lymphoblastic lymphoma/leukemia","type":"exact"}],"termid":"MONDO:0003537","xrefs":{"Monarch":{"xref_id":"0003537"}}}


id: PBO:0076636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transducin beta like 3","termid":"PBO:0076636"}


id: PR:O59779
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC1235.01 gene.","definition_xrefs":["UniProtKB:O59779","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1235.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1235.01","synonyms":[{"name":"Spom972h-SPCC1235.01","type":"exact"}],"termid":"PR:O59779"}


id: PBO:0072421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S27 pseudogene 26","termid":"PBO:0072421"}


id: PR:O74560
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- raf2 gene.","definition_xrefs":["UniProtKB:O74560","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rik1-associated factor 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC970.07c","synonyms":[{"name":"De-localization of swi6 protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-raf2","type":"exact"},{"name":"cryptic loci regulator 7 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74560"}


id: MONDO:0021195
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete disease by cellular process disrupted (obsolete MONDO:0021195)","termid":"MONDO:0021195","xrefs":{"Monarch":{"xref_id":"0021195"}}}


id: PBO:0045589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4","termid":"PBO:0045589"}


id: GO:1903713
data:
  {"annotated_genes":["SJAG_04725","SJAG_02029"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104748,112017],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990591"}]},"cv_name":"biological_process","definition":"The directed movement of asparagine across a membrane.","definition_xrefs":["PMID:18503766","GOC:TermGenie","GO_REF:0000069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transport","termid":"GO:0003333"},{"relation_name":"is_a","term_name":"amide transport","termid":"GO:0042886"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02029":null,"SJAG_04725":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"asparagine transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1903713","terms_by_termid":{"GO:1990591":null}}


id: MONDO:0008027
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"muscular atrophy, malignant neurogenic","secondary_identifiers":["MEDGEN:322469","UMLS:C1834689","OMIM:158650","MESH:C563559"],"synonyms":[{"name":"muscular atrophy, malignant neurogenic","type":"exact"}],"termid":"MONDO:0008027","xrefs":{"Monarch":{"xref_id":"0008027"}}}


id: PBO:0053694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 892","termid":"PBO:0053694"}


id: GO:0032469
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the maintenance of an internal steady state of calcium ions within the endoplasmic reticulum of a cell or between the endoplasmic reticulum and its surroundings.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular calcium ion homeostasis","termid":"GO:0006874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098771"}],"interesting_parent_ids":["GO:0008150","GO:0098771"],"is_obsolete":false,"name":"endoplasmic reticulum calcium ion homeostasis","synonyms":[{"name":"ER calcium ion concentration regulation","type":"exact"},{"name":"ER calcium ion homeostasis","type":"exact"},{"name":"calcium ion homeostasis in ER","type":"exact"},{"name":"calcium ion homeostasis in endoplasmic reticulum","type":"exact"},{"name":"endoplasmic reticulum calcium ion concentration regulation","type":"exact"},{"name":"regulation of ER calcium ion concentration","type":"exact"},{"name":"regulation of calcium ion concentration in ER","type":"exact"},{"name":"regulation of calcium ion concentration in endoplasmic reticulum","type":"exact"},{"name":"regulation of endoplasmic reticulum calcium ion concentration","type":"exact"}],"termid":"GO:0032469"}


id: PBO:0052113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel subfamily C member 1","termid":"PBO:0052113"}


id: PBO:0112999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha arrestin, Ub-ligase adaptor for Rsp5p; controls nutrient limitation-mediated endosomal recycling of the Gap1p amino acid permease; PY motif-containing adaptor involved in substrate-induced, Rsp5p-mediated ubiquitination and endocytosis of select plasma membrane localized amino acid transporters, such as Dip5p and Put4p; regulates intracellular pH; phosphorylated by Npr1p and by the Pcl7p-Pho85p cyclin-CDK complex; interacts with AP-1 subunit Apl4p","termid":"PBO:0112999"}


id: GO:0098552
data:
  {"annotated_genes":["SJAG_01242","SJAG_00254","SJAG_00368","SJAG_00218","SJAG_04509","SJAG_01940","SJAG_04850","SJAG_01738","SJAG_02435","SJAG_04952","SJAG_03345","SJAG_02916","SJAG_03656","SJAG_03282","SJAG_00784","SJAG_03596","SJAG_04851","SJAG_05204","SJAG_MIT37","SJAG_04732","SJAG_04018","SJAG_03328","SJAG_01312","SJAG_01086","SJAG_04026","SJAG_00334","SJAG_00133","SJAG_02163","SJAG_03925","SJAG_00915","SJAG_02598","SJAG_03311","SJAG_02093","SJAG_00754","SJAG_00836","SJAG_04209","SJAG_00077","SJAG_01835","SJAG_04583","SJAG_00542","SJAG_04483","SJAG_00415","SJAG_MIT09","SJAG_01806","SJAG_03056","SJAG_01774","SJAG_05272","SJAG_03081","SJAG_04077","SJAG_02102","SJAG_02233","SJAG_00605","SJAG_02605","SJAG_01249","SJAG_04821","SJAG_05207","SJAG_01290","SJAG_01178","SJAG_00948","SJAG_04789","SJAG_02444","SJAG_03640","SJAG_00852","SJAG_04122","SJAG_02260","SJAG_02105","SJAG_01260","SJAG_00554","SJAG_01134","SJAG_01950","SJAG_02173","SJAG_00437","SJAG_00797","SJAG_02587","SJAG_00109","SJAG_MIT15","SJAG_02196","SJAG_00438","SJAG_04685","SJAG_01307","SJAG_00340","SJAG_04363","SJAG_03764","SJAG_00310","SJAG_01029","SJAG_03114","SJAG_03464","SJAG_00985","SJAG_07003","SJAG_00096","SJAG_02989","SJAG_05268","SJAG_02564","SJAG_04238","SJAG_04875","SJAG_04666","SJAG_00747","SJAG_03204"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[61211,63313],"is_not":false,"summary":null,"term":"GO:0098552"},{"annotations":[116142,118760,100601,77813,109992,99701,113002,95792,111838,96989,104244,100261,107802],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098554"},{"annotations":[92456],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010009"},{"annotations":[102463,106776,119706,104450,103286,107765,108557,117791,91132,107895,106420,101183],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032473"},{"annotations":[89747,78004,94302,80014,81562,91607,100903,72462,112856],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009898"},{"annotations":[108559],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106186"},{"annotations":[65207,120821,104186,105948,96760,91998,115038,95943,116772,119808,120384,115751,119368,96762,116493,97191,117624,104194,116394,108528,96748,58679,104193,91801,96761,118292],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009897"},{"annotations":[112533],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031234"},{"annotations":[102391,105709],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0099616"},{"annotations":[82192,108467,75975,77071],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005834"},{"annotations":[92253,101926,101714,77812,100311,106970,93014,111281],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098553"},{"annotations":[96752,103761,121121,98166,91372,95761,105624,121116,104981,117865,91834,95709,91005,109782,109874,95170,110772,121110,94743,106974,105598],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099617"}]},"cv_name":"cellular_component","definition":"A cellular component consisting of one leaflet of a membrane bilayer and any proteins embedded or anchored in it or attached to its surface.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"membrane","termid":"GO:0016020"}],"gene_count":98,"genes_by_uniquename":{"SJAG_00077":null,"SJAG_00096":null,"SJAG_00109":null,"SJAG_00133":null,"SJAG_00218":null,"SJAG_00254":null,"SJAG_00310":null,"SJAG_00334":null,"SJAG_00340":null,"SJAG_00368":null,"SJAG_00415":null,"SJAG_00437":null,"SJAG_00438":null,"SJAG_00542":null,"SJAG_00554":null,"SJAG_00605":null,"SJAG_00747":null,"SJAG_00754":null,"SJAG_00784":null,"SJAG_00797":null,"SJAG_00836":null,"SJAG_00852":null,"SJAG_00915":null,"SJAG_00948":null,"SJAG_00985":null,"SJAG_01029":null,"SJAG_01086":null,"SJAG_01134":null,"SJAG_01178":null,"SJAG_01242":null,"SJAG_01249":null,"SJAG_01260":null,"SJAG_01290":null,"SJAG_01307":null,"SJAG_01312":null,"SJAG_01738":null,"SJAG_01774":null,"SJAG_01806":null,"SJAG_01835":null,"SJAG_01940":null,"SJAG_01950":null,"SJAG_02093":null,"SJAG_02102":null,"SJAG_02105":null,"SJAG_02163":null,"SJAG_02173":null,"SJAG_02196":null,"SJAG_02233":null,"SJAG_02260":null,"SJAG_02435":null,"SJAG_02444":null,"SJAG_02564":null,"SJAG_02587":null,"SJAG_02598":null,"SJAG_02605":null,"SJAG_02916":null,"SJAG_02989":null,"SJAG_03056":null,"SJAG_03081":null,"SJAG_03114":null,"SJAG_03204":null,"SJAG_03282":null,"SJAG_03311":null,"SJAG_03328":null,"SJAG_03345":null,"SJAG_03464":null,"SJAG_03596":null,"SJAG_03640":null,"SJAG_03656":null,"SJAG_03764":null,"SJAG_03925":null,"SJAG_04018":null,"SJAG_04026":null,"SJAG_04077":null,"SJAG_04122":null,"SJAG_04209":null,"SJAG_04238":null,"SJAG_04363":null,"SJAG_04483":null,"SJAG_04509":null,"SJAG_04583":null,"SJAG_04666":null,"SJAG_04685":null,"SJAG_04732":null,"SJAG_04789":null,"SJAG_04821":null,"SJAG_04850":null,"SJAG_04851":null,"SJAG_04875":null,"SJAG_04952":null,"SJAG_05204":null,"SJAG_05207":null,"SJAG_05268":null,"SJAG_05272":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"side of membrane","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"termid":"GO:0098552","terms_by_termid":{"GO:0005834":null,"GO:0009897":null,"GO:0009898":null,"GO:0010009":null,"GO:0031234":null,"GO:0032473":null,"GO:0098552":null,"GO:0098553":null,"GO:0098554":null,"GO:0099616":null,"GO:0099617":null,"GO:0106186":null}}


id: PBO:0085629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in Fe-S cluster transfer to mitochondrial clients; protects [4Fe-4S] clusters from damage due to oxidative stress by acting along with Nfu1p at a late step in the transfer of [4Fe-4S] clusters from the ISA complex to mitochondrial client proteins like lipoate synthase and succinate dehydrogenase; sequence similarity to human BOLA family member, BOLA3, mutations of which are associated with Multiple Mitochondria Dysfunctions Syndrome (MMDS2)","termid":"PBO:0085629"}


id: PBO:0090789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII vesicle coat component Erp5/Erp6/Erp1","termid":"PBO:0090789"}


id: PBO:0000193
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alkali-sensitive linkage","termid":"PBO:0000193"}


id: PBO:0068461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 38, pseudogene","termid":"PBO:0068461"}


id: PBO:0078208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 7-1 (non-functional)","termid":"PBO:0078208"}


id: GO:0140633
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a CARD8 inflammasome complex.","definition_xrefs":["PMID:33542150","PMID:33420028","PMID:33420033"],"direct_ancestors":[{"relation_name":"is_a","term_name":"canonical inflammasome complex assembly","termid":"GO:0140632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"CARD8 inflammasome complex assembly","termid":"GO:0140633"}


id: MONDO:0015632
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial oxidative phosphorylation disorder","termid":"MONDO:0016387"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"FASTKD2-related infantile mitochondrial encephalomyopathy","secondary_identifiers":["Orphanet:166105","icd11.foundation:356231901","UMLS:C4755278","GARD:17026","MEDGEN:1665220"],"termid":"MONDO:0015632","xrefs":{"Monarch":{"xref_id":"0015632"}}}


id: MONDO:0021437
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lipoma that involves the stomach.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipoma","termid":"MONDO:0005106"},{"relation_name":"is_a","term_name":"benign neoplasm of stomach","termid":"MONDO:0021449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"lipoma of stomach","secondary_identifiers":["NCIT:C5258","MEDGEN:234299","SCTID:695751021000132104","UMLS:C1333777"],"synonyms":[{"name":"gastric lipoma","type":"exact"},{"name":"lipoma of the stomach","type":"exact"},{"name":"stomach lipoma","type":"exact"}],"termid":"MONDO:0021437","xrefs":{"Monarch":{"xref_id":"0021437"}}}


id: PBO:0066185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 8A","termid":"PBO:0066185"}


id: GO:0060698
data:
  {"annotated_genes":["SJAG_02594"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90708],"is_not":false,"summary":null,"term":"GO:0060698"}]},"cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of endoribonuclease.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonuclease inhibitor activity","termid":"GO:0008428"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02594":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"}],"interesting_parent_ids":["GO:0140678","GO:0004857","GO:0098772","GO:0030234","GO:0003674"],"is_obsolete":false,"name":"endoribonuclease inhibitor activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0060698","terms_by_termid":{"GO:0060698":null}}


id: PBO:0053932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1231","termid":"PBO:0053932"}


id: GO:1901548
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of synaptic vesicle lumen acidification.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synaptic vesicle lumen acidification","termid":"GO:1901546"},{"relation_name":"is_a","term_name":"positive regulation of cation transmembrane transport","termid":"GO:1904064"},{"relation_name":"positively_regulates","term_name":"synaptic vesicle lumen acidification","termid":"GO:0097401"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of synaptic vesicle lumen acidification","synonyms":[{"name":"activation of synaptic vesicle lumen acidification","type":"narrow"},{"name":"activation of synaptic vesicle lumen pH reduction","type":"narrow"},{"name":"positive regulation of proton loading","type":"exact"},{"name":"positive regulation of synaptic vesicle lumen pH reduction","type":"exact"},{"name":"up regulation of synaptic vesicle lumen acidification","type":"exact"},{"name":"up regulation of synaptic vesicle lumen pH reduction","type":"exact"},{"name":"up-regulation of synaptic vesicle lumen acidification","type":"exact"},{"name":"up-regulation of synaptic vesicle lumen pH reduction","type":"exact"},{"name":"upregulation of synaptic vesicle lumen acidification","type":"exact"},{"name":"upregulation of synaptic vesicle lumen pH reduction","type":"exact"}],"termid":"GO:1901548"}


id: PBO:0065839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB9A, member RAS oncogene family pseudogene 4","termid":"PBO:0065839"}


id: GO:0042245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in the repair of damaged RNA.","definition_xrefs":["UniProtKB-KW:KW-0692","PMID:11000254","PMID:11070075"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA metabolic process","termid":"GO:0016070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"RNA repair","termid":"GO:0042245"}


id: MOD:00796
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-arginine residue to L-ornithine.","definition_xrefs":["DeltaMass:129","OMSSA:163","Unimod:372","PubMed:15489230"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-arginine residue","termid":"MOD:00902"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-ornithine (Arg)","synonyms":[{"name":"Arg->Orn","type":"related"},{"name":"Ornithine (from Arginine)","type":"exact"},{"name":"Ornithine from Arginine","type":"related"},{"name":"Ornithyl","type":"exact"},{"name":"arg2orn","type":"exact"}],"termid":"MOD:00796"}


id: FYPO:0007738
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the distribution of a protein localized to chromatin at the 3' ends of genes that can be transcribed by RNA polymerase II is normal (i.e. indistinguishable from wild type) during metaphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah","PMID:33771877"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin at 3' end of genes","termid":"FYPO:0007731"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0001312","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to chromatin at 3' end of RNA polymerase II-transcribed genes during mitotic metaphase","synonyms":[{"name":"normal condensin localization to chromatin at 3' end of RNA polymerase II-transcribed genes during mitotic metaphase","type":"broad"},{"name":"normal protein localisation to chromatin at 3' end of RNA polymerase II-transcribed genes during mitotic metaphase","type":"exact"},{"name":"normal protein localization to chromatin at 3' end of RNA polymerase II-transcribed genes during metaphase during vegetative growth","type":"exact"},{"name":"normal protein localization to chromatin at 3' end of RNA polymerase II-transcribed genes during metaphase of mitotic cell cycle","type":"exact"},{"name":"normal protein localization to chromatin downstream of RNA polymerase II-transcribed genes during mitotic metaphase","type":"exact"}],"termid":"FYPO:0007738"}


id: MONDO:1011739
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"integumentary system disorder, non-human animal","termid":"MONDO:1011328"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital hypotrichosis with thymic aplasia, non-human animal","secondary_identifiers":["OMIA:000544"],"termid":"MONDO:1011739","xrefs":{"Monarch":{"xref_id":"1011739"}}}


id: MONDO:0009768
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive form of oculodentodigital dysplasia.","definition_xrefs":["MONDO:patterns/autosomal_recessive"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"oculodentodigital dysplasia","termid":"MONDO:0008111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0006025","MONDO:0005093"],"is_obsolete":false,"name":"oculodentodigital dysplasia, autosomal recessive","secondary_identifiers":["OMIM:257850","GARD:15213","MESH:C567605","MEDGEN:412708","UMLS:C2749477"],"synonyms":[{"name":"ODDD, autosomal recessive","type":"related"},{"name":"ODOD recessive","type":"related"},{"name":"ODOD, autosomal recessive","type":"related"},{"name":"autosomal recessive oculodentodigital dysplasia","type":"exact"},{"name":"oculodentodigital dysplasia, autosomal recessive","type":"exact"},{"name":"oculodentoosseous dysplasia recessive","type":"related"},{"name":"oculodentoosseous dysplasia, autosomal recessive","type":"related"}],"termid":"MONDO:0009768","xrefs":{"Monarch":{"xref_id":"0009768"}}}


id: PR:O14148
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA helicase INO80 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02246","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA helicase ino80 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29B12.01","secondary_identifiers":["UniProtKB:O14148"],"synonyms":[{"name":"Spom972h-INO80","type":"exact"}],"termid":"PR:O14148"}


id: PR:O42917
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- eso1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42917"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetyltransferase eso1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16A3.11","synonyms":[{"name":"ECO1 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-eso1","type":"exact"},{"name":"sister chromatid cohesion protein eso1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42917"}


id: GO:0030268
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5,10-methylenetetrahydromethanopterin + coenzyme F420 + 2 H+ = 5,10-methenyl-5,6,7,8-tetrahydromethanopterin + reduced coenzyme F420.","definition_xrefs":["EC:1.5.98.1","RHEA:16721"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors","termid":"GO:0016645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"methylenetetrahydromethanopterin dehydrogenase activity","secondary_identifiers":["MetaCyc:1.5.99.9-RXN","UM-BBD_reactionID:r0348","GO:0018536","KEGG_REACTION:R04456"],"synonyms":[{"name":"5,10-methylenetetrahydromethanopterin dehydrogenase activity","type":"related"},{"name":"5,10-methylenetetrahydromethanopterin:coenzyme-F420 oxidoreductase activity","type":"related"},{"name":"N(5),N(10)-methylenetetrahydromethanopterin dehydrogenase activity","type":"related"}],"termid":"GO:0030268"}


id: PBO:0039793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1","termid":"PBO:0039793"}


id: MONDO:0000468
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by an electrocardiographic finding of complete failure of atrial electrical impulse conduction to the ventricles. This is manifested on the ECG by disassociation of atrial and ventricular rhythms. The atrial rate must be faster than the ventricular rate. (CDISC)","definition_xrefs":["NCIT:C50501"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrioventricular block","termid":"MONDO:0000465"},{"relation_name":"is_a","term_name":"cardiac rhythm disease","termid":"MONDO:0007263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"third-degree atrioventricular block","secondary_identifiers":["NANDO:2200214","ICD9:426.0","MEDGEN:56230","SCTID:27885002","UMLS:C0151517","DOID:0050823"],"synonyms":[{"name":"AV block third degree","type":"exact"},{"name":"atrioventricular block complete","type":"exact"},{"name":"atrioventricular block, third degree","type":"exact"},{"name":"complete AV block","type":"exact"},{"name":"complete atrioventricular block","type":"exact"},{"name":"complete heart block","type":"exact"},{"name":"non-congenital complete atrioventricular block","type":"exact"},{"name":"third degree AV block","type":"exact"},{"name":"third degree atrioventricular block","type":"exact"}],"termid":"MONDO:0000468","xrefs":{"Monarch":{"xref_id":"0000468"}}}


id: GO:0046059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of dAMP, deoxyadenosine monophosphate (2'-deoxyadenosine 5'-phosphate).","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine deoxyribonucleotide catabolic process","termid":"GO:0009155"},{"relation_name":"is_a","term_name":"purine deoxyribonucleoside monophosphate catabolic process","termid":"GO:0009172"},{"relation_name":"is_a","term_name":"dAMP metabolic process","termid":"GO:0046053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"dAMP catabolic process","synonyms":[{"name":"dAMP breakdown","type":"exact"},{"name":"dAMP catabolism","type":"exact"},{"name":"dAMP degradation","type":"exact"}],"termid":"GO:0046059"}


id: MONDO:0017100
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Neutropenia-monocytopenia-deafness syndrome is characterized by neutropenia with myeloid marrow hypoplasia, monocytopenia, and congenital deafness. It has been described in three siblings who suffered recurrent bacterial infections.","definition_xrefs":["Orphanet:2690"],"direct_ancestors":[{"relation_name":"is_a","term_name":"constitutional neutropenia","termid":"MONDO:0015134"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"neutropenia-monocytopenia-deafness syndrome","secondary_identifiers":["GARD:3982","MEDGEN:1383523","UMLS:C4518430"],"termid":"MONDO:0017100","xrefs":{"Monarch":{"xref_id":"0017100"}}}


id: MONDO:1012503
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hydrallantois, non-human animal","termid":"MONDO:1011672"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrallantois, cattle","secondary_identifiers":["OMIA:002053-9913"],"termid":"MONDO:1012503","xrefs":{"Monarch":{"xref_id":"1012503"}}}


id: PBO:0080130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vesicle associated membrane protein 9, pseudogene","termid":"PBO:0080130"}


id: MONDO:0016336
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete fatty acid oxidation and ketogenesis disorder with dilated cardiomyopathy (obsolete MONDO:0016336)","secondary_identifiers":["Orphanet:217616"],"termid":"MONDO:0016336","xrefs":{"Monarch":{"xref_id":"0016336"}}}


id: MONDO:0007422
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"integumentary system disorder","termid":"MONDO:0002051"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratoderma hereditarium mutilans","secondary_identifiers":["UMLS:C0265964","OMIM:124500","DOID:0111339","Orphanet:494","MESH:C536457","SCTID:24559001","GARD:3092","MEDGEN:78579","ICD9:757.39"],"synonyms":[{"name":"KHM","type":"related"},{"name":"PPK mutilans and deafness","type":"exact"},{"name":"VOWNKL","type":"related"},{"name":"Vohwinkel syndrome","type":"exact"},{"name":"deafness, congenital, with KERATOPACHYDERMIA and constrictions of fingers and toes","type":"related"},{"name":"keratoderma hereditarium mutilans","type":"exact"},{"name":"mutilating keratoderma","type":"related"},{"name":"mutilating keratoderma of Vohwinkel","type":"exact"},{"name":"mutilating keratoderma plus deafness","type":"exact"}],"termid":"MONDO:0007422","xrefs":{"Monarch":{"xref_id":"0007422"}}}


id: PBO:0081220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZMPSTE24 divergent transcript","termid":"PBO:0081220"}


id: FYPO:0001928
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype in which regulation of the mitotic cell cycle is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic cell cycle","termid":"FYPO:0000411"},{"relation_name":"is_a","term_name":"regulation phenotype during vegetative growth","termid":"FYPO:0001334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal regulation of mitotic cell cycle","synonyms":[{"name":"normal cell cycle regulation during vegetative growth","type":"exact"},{"name":"normal regulation of mitotic cell cycle during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001928"}


id: PBO:0004390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA snR93","termid":"PBO:0004390"}


id: PBO:0054200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1580","termid":"PBO:0054200"}


id: PBO:0072032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 2","termid":"PBO:0072032"}


id: GO:0046625
data:
  {"annotated_genes":["SJAG_01848","SJAG_03690"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110629],"is_not":false,"summary":null,"term":"GO:0046625"},{"annotations":[119544],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097001"}]},"cv_name":"molecular_function","definition":"Binding to a sphingolipid, a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid).","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid binding","termid":"GO:0008289"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01848":null,"SJAG_03690":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0008289"],"is_obsolete":false,"name":"sphingolipid binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0046625","terms_by_termid":{"GO:0046625":null,"GO:0097001":null}}


id: GO:1904301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of maternal process involved in parturition.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:1849751"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"maternal process involved in parturition","termid":"GO:0060137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of maternal process involved in parturition","termid":"GO:1904301"}


id: MONDO:0009492
data:
  {"annotated_genes":["SJAG_02769"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88389],"is_not":false,"summary":null,"term":"MONDO:0009492"}]},"cv_name":"mondo","definition":"Succinyl-CoA:3-ketoacid CoA transferase deficiency (SCOTD) is a defect in ketone body utilization characterized by severe, potentially fatal intermittent episodes of ketoacidosis.","definition_xrefs":["Orphanet:832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of ketolysis","termid":"MONDO:0019229"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02769":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"succinyl-CoA:3-ketoacid CoA transferase deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:245050","SCTID:238004006","ICD9:270.8","MESH:C537527","NANDO:2200499","GARD:4774","MEDGEN:137979","UMLS:C0342792"],"synonyms":[{"name":"3-oxoacid CoA transferase deficiency","type":"related"},{"name":"OXCT1 deficiency","type":"exact"},{"name":"SCOT deficiency","type":"exact"},{"name":"SCOTD","type":"related"},{"name":"Scot deficiency","type":"related"},{"name":"Succinyl CoA:3-oxoacid CoA transferase deficiency","type":"exact"},{"name":"ketoacidosis due to Scot deficiency","type":"related"},{"name":"succinyl-CoA acetoacetate transferase deficiency","type":"exact"},{"name":"succinyl-CoA:3-ketoacid CoA transferase deficiency","type":"exact"},{"name":"succinyl-CoA:3-oxoacid CoA transferase deficiency","type":"exact"},{"name":"succinyl-CoA:3-oxoacid-CoA transferase deficiency","type":"related"},{"name":"succinyl-Coa:3-ketoacid Coa-transferase deficiency","type":"related"},{"name":"succinyl-Coa:acetoacetate transferase deficiency","type":"related"}],"termid":"MONDO:0009492","terms_by_termid":{"MONDO:0009492":null},"xrefs":{"Monarch":{"xref_id":"0009492"}}}


id: GO:0035446
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-(2-amino-2-deoxy-alpha-D-glucopyranoside)-1D-myo-inositol + L-cysteine + ATP = 1-D-myo-inosityl-2-L-cysteinylamido-2-deoxy-alpha-D-glucopyranoside + AMP + diphosphate + 2 H+. 1-(2-amino-2-deoxy-alpha-D-glucopyranoside)-1D-myo-inositol is also known as glucosaminyl-inositol or GlcN-Ins, and 1-D-myo-inosityl-2-L-cysteinylamido-2-deoxy-alpha-D-glucopyranoside as desacetylmycothiol or Cys-GlcN-Ins.","definition_xrefs":["EC:6.3.1.13","PMID:12033919"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-ammonia (or amide) ligase activity","termid":"GO:0016880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016874","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"cysteine-glucosaminylinositol ligase activity","secondary_identifiers":["RHEA:26176","MetaCyc:RXN1G-121"],"synonyms":[{"name":"L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase","type":"related"},{"name":"MshC ligase","type":"related"},{"name":"desacetylmycothiol synthase","type":"related"}],"termid":"GO:0035446"}


id: GO:0032556
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a pyrimidine deoxyribonucleotide, any compound consisting of a pyrimidine deoxyribonucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the deoxyribose moiety.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleotide binding","termid":"GO:0019103"},{"relation_name":"is_a","term_name":"deoxyribonucleotide binding","termid":"GO:0032552"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"pyrimidine deoxyribonucleotide binding","termid":"GO:0032556"}


id: MONDO:0004230
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm arising from mesothelial cells. It is characterized by the formation of glandular and tubular patterns. It can occur in several anatomic sites including the pleura, peritoneum, and epididymis.","definition_xrefs":["NCIT:C3762"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesothelioma","termid":"MONDO:0005065"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenomatoid tumor","secondary_identifiers":["ICDO:9052/0","ICDO:9054/0","MEDGEN:60207","UMLS:C0206675","DOID:746","MESH:D018254","ICDO:9050/0"],"synonyms":[{"name":"adenomatoid tumor","type":"exact"},{"name":"adenomatoid tumor (morphologic abnormality)","type":"exact"},{"name":"adenomatoid tumor NOS (morphologic abnormality)","type":"exact"},{"name":"adenomatoid tumor, benign","type":"exact"},{"name":"adenomatoid tumour (morphologic abnormality)","type":"exact"},{"name":"adenomatoid tumour NOS (morphologic abnormality)","type":"exact"},{"name":"benign localised epithelial mesothelioma","type":"exact"},{"name":"benign localized epithelial mesothelioma","type":"exact"},{"name":"benign mesothelial neoplasm","type":"related"},{"name":"benign mesothelial tumor","type":"related"},{"name":"benign mesothelial tumour","type":"related"},{"name":"benign mesothelioma","type":"related"},{"name":"benign neoplasm of mesothelium","type":"related"},{"name":"benign neoplasm of the mesothelium","type":"related"},{"name":"benign tumor of mesothelium","type":"related"},{"name":"benign tumor of the mesothelium","type":"related"},{"name":"benign tumour of mesothelium","type":"related"},{"name":"benign tumour of the mesothelium","type":"related"},{"name":"mesothelioma, benign","type":"related"}],"termid":"MONDO:0004230","xrefs":{"Monarch":{"xref_id":"0004230"}}}


id: PBO:0064183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group XJ, pseudogene","termid":"PBO:0064183"}


id: GO:0016532
data:
  {"annotated_genes":["SJAG_04403"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95032],"is_not":false,"summary":null,"term":"GO:0016532"}]},"cv_name":"molecular_function","definition":"A copper chaperone activity that specifically delivers copper to the Cu-Zn superoxide dismutase, to activate superoxide dismutase activity.","definition_xrefs":["GOC:vw","PMID:15064408","PMID:9295278"],"direct_ancestors":[{"relation_name":"is_a","term_name":"copper chaperone activity","termid":"GO:0016531"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04403":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140104"}],"interesting_parent_ids":["GO:0003674","GO:0140104"],"is_obsolete":false,"name":"superoxide dismutase copper chaperone activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"superoxide dismutase copper carrier activity","type":"exact"}],"termid":"GO:0016532","terms_by_termid":{"GO:0016532":null}}


id: PBO:0086066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function that interacts with Sec72p and Hrr25p","termid":"PBO:0086066"}


id: PBO:0045307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA methyltransferase 3 alpha","termid":"PBO:0045307"}


id: PBO:0004502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U1 snRNP-associated protein Usp102","termid":"PBO:0004502"}


id: FYPO:0000216
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of the initiation of mitotic DNA replication is abnormal. May result in re-replication of all or part of the genome.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of mitotic DNA replication initiation","termid":"FYPO:0001248"},{"relation_name":"is_a","term_name":"abnormal negative regulation of DNA replication initiation","termid":"FYPO:0004757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"abnormal negative regulation of mitotic DNA replication initiation","synonyms":[{"name":"abnormal negative regulation of DNA replication initiation during mitotic cell cycle","type":"related"},{"name":"abnormal negative regulation of mitotic DNA replication initiation during vegetative growth","type":"exact"},{"name":"mitotic DNA re-replication","type":"related"},{"name":"mitotic DNA rereplication","type":"related"}],"termid":"FYPO:0000216"}


id: PBO:0086011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; SWAT-GFP and mCherry fusion proteins localize to the endoplasmic reticulum and vacuole respectively; orthologs are present in S. bayanus, S. paradoxus and Ashbya gossypii; YCL012C is not an essential gene","termid":"PBO:0086011"}


id: GO:0034320
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: hexanoyl-CoA + an alcohol = CoA + a hexyl ester.","definition_xrefs":["GOC:mah","PMID:16361250"],"gene_count":0,"genotype_count":0,"name":"obsolete alcohol O-hexanoyltransferase activity (obsolete GO:0034320)","termid":"GO:0034320"}


id: GO:0060275
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The homeostatic process in which a population of cells changes its metabolic activity resulting in the rate of death in the population equaling the rate of reproduction in response to limited nutrients in the environment.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete maintenance of stationary phase in response to starvation (obsolete GO:0060275)","termid":"GO:0060275"}


id: MONDO:0000019
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete ectodermal dysplasia (obsolete MONDO:0000019)","termid":"MONDO:0000019","xrefs":{"Monarch":{"xref_id":"0000019"}}}


id: GO:0102399
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: S-adenosyl-L-methionine + dTDP-3-N-methylamino-4-oxo-2,3,6-trideoxy-alpha-D-glucose = S-adenosyl-L-homocysteine + dTDP-3-N,N-dimethylamino-4-oxo-2,3,6-trideoxy-alpha-D-glucose + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete dTDP-3-N-methylamino-4-oxo-2,3,6-trideoxy-alpha-D-glucose N-methyltransferase activity (obsolete GO:0102399)","termid":"GO:0102399"}


id: GO:2001142
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a nicotinateacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transport","termid":"GO:0015718"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"nicotinate transport","termid":"GO:2001142"}


id: MONDO:0007688
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Myhre syndrome is characterized by striking muscular build, short stature, reduced joint mobility, brachydactyly, mixed hearing loss and mental retardation of variable severity. Facial dysmorphism with short palpebral fissures, short philtrum, thin lips, maxillary hypoplasia and prognathism is present. Thick skin has been observed in six patients.","definition_xrefs":["Orphanet:2588"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"acromelic dysplasia","termid":"MONDO:0019695"},{"relation_name":"is_a","term_name":"autosomal dominant syndromic intellectual disability","termid":"MONDO:0100601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0000426"],"is_obsolete":false,"name":"Myhre syndrome","secondary_identifiers":["GARD:2572","ICD9:759.89","NORD:1481","OMIM:139210","SCTID:699316006","UMLS:C0796081","NCIT:C123815","MEDGEN:167103","MESH:C537620"],"synonyms":[{"name":"Growth mental deficiency syndrome of Myhre","type":"related"},{"name":"Growth-mental deficiency syndrome of Myhre","type":"related"},{"name":"LAPS syndrome","type":"related"},{"name":"MYHRE syndrome","type":"related"},{"name":"MYHRS","type":"related"},{"name":"Myhre syndrome","type":"exact"},{"name":"facial dysmorphism - intellectual deficit - short stature - hearing loss","type":"related"},{"name":"facial dysmorphism-intellectual disability-short stature-hearing loss syndrome","type":"exact"},{"name":"laryngotracheal stenosis, arthropathy, prognathism, and short stature","type":"related"}],"termid":"MONDO:0007688","xrefs":{"Monarch":{"xref_id":"0007688"}}}


id: MONDO:0002403
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cancer that involves the layer of synovial tissue.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system cancer","termid":"MONDO:0000637"},{"relation_name":"is_a","term_name":"synovium neoplasm","termid":"MONDO:0002528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"synovium cancer","secondary_identifiers":["MEDGEN:277340","NCIT:C6531","DOID:2706","UMLS:C1334624"],"synonyms":[{"name":"cancer of layer of synovial tissue","type":"exact"},{"name":"cancer of synovial membrane of synovial joint","type":"exact"},{"name":"layer of synovial tissue cancer","type":"exact"},{"name":"malignant layer of synovial tissue neoplasm","type":"exact"},{"name":"malignant neoplasm of layer of synovial tissue","type":"exact"},{"name":"malignant neoplasm of synovial membrane of synovial joint","type":"exact"},{"name":"malignant neoplasm of synovium","type":"exact"},{"name":"malignant neoplasm of the synovium","type":"exact"},{"name":"malignant synovial membrane of synovial joint neoplasm","type":"exact"},{"name":"malignant synovial neoplasm","type":"exact"},{"name":"malignant synovial tumor","type":"exact"},{"name":"malignant synovial tumour","type":"exact"},{"name":"malignant tumor of synovium","type":"exact"},{"name":"malignant tumor of the synovium","type":"exact"},{"name":"malignant tumour of synovium","type":"exact"},{"name":"malignant tumour of the synovium","type":"exact"},{"name":"synovial membrane of synovial joint cancer","type":"exact"}],"termid":"MONDO:0002403","xrefs":{"Monarch":{"xref_id":"0002403"}}}


id: MONDO:0009358
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hutterite cerebroosteonephrodysplasia syndrome","secondary_identifiers":["UMLS:C1856054","MEDGEN:343466","MESH:C536074","OMIM:236450"],"synonyms":[{"name":"Hutterite cerebroosteonephrodysplasia syndrome","type":"exact"},{"name":"cerebroosteonephosis syndrome","type":"related"},{"name":"cond","type":"related"}],"termid":"MONDO:0009358","xrefs":{"Monarch":{"xref_id":"0009358"}}}


id: PBO:0029226
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_homologous_chromosome_pairing","termid":"PBO:0029226"}


id: MOD:00329
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively results from forming an adduct between a glutamic acid residue and the porphyrin compound heme b, (7,12-diethenyl-3,8,13,17-tetramethylporphyrin-2,18-dipropanoato)iron.","definition_xrefs":["PubMed:11139583","PubMed:11980497","PubMed:11821421","Unimod:436#E","RESID:AA0324"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porphyrin modified residue","termid":"MOD:00699"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-glutamic acid residue","termid":"MOD:02068"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxyheme-L-glutamate ester","synonyms":[{"name":"5-hydroxymethyl protoporphyrin IX 5-glutamate ester","type":"exact"},{"name":"BINDING Heme (covalent; via 1 link)","type":"exact"},{"name":"Hydroxyheme","type":"related"},{"name":"[3-[(S)-(4-amino-4-carboxy)butanoyloxymethyl]-7,12-diethenyl-8,13,17-trimethyl-21H,23H-porphine-2,18-bis(2-carboxyethyl)-N21,N22,N23,N24]-ferrate","type":"exact"},{"name":"cytochrome P450 CYP4A family heme cofactor","type":"exact"},{"name":"hydroxyheme","type":"related"},{"name":"hydroxyheme-L-glutamate ester","type":"exact"}],"termid":"MOD:00329"}


id: PBO:0043520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly factor 1","termid":"PBO:0043520"}


id: PBO:0016952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antisense RNA Meu16","termid":"PBO:0016952"}


id: PBO:0113468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of TORC1 and TORC2 involved in TOR signaling; TORC1 regulates nutrient responsive growth and TORC2 regulates plasma membrane (PM) homeostasis and cell-cycle dependent actin cytoskeleton polarization; negative regulator of Rtg1p/3p and Gln3p transcription factors and amino acid biosynthesis; binds to both Tor1p and Tor2p, regulating the integrity and kinase activity of TORC2; PM retention is dependent on Avo3p; WD-repeat protein","termid":"PBO:0113468"}


id: FYPO:0003611
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell during one or both meiotic nuclear divisions is higher than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level","termid":"FYPO:0000836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"increased protein level during meiosis","synonyms":[{"name":"increased protein accumulation during meiosis","type":"related"},{"name":"increased protein level during meiotic nuclear division","type":"exact"}],"termid":"FYPO:0003611"}


id: GO:0085012
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An interaction with the host organism mediated by a substance secreted by the symbiont organism by a Tat complex. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete interaction with host via protein secreted by Tat complex (obsolete GO:0085012)","synonyms":[{"name":"interaction with host via protein secreted by Tat secretion system","type":"exact"}],"termid":"GO:0085012"}


id: GO:0008013
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a catenin beta subunit.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"beta-catenin binding","termid":"GO:0008013"}


id: GO:0048478
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that prevents the collapse of stalled replication forks.","definition_xrefs":["GOC:vw","PMID:14560029"],"gene_count":0,"genotype_count":0,"name":"obsolete replication fork protection (obsolete GO:0048478)","synonyms":[{"name":"replication fork maintenance","type":"broad"},{"name":"replication fork stabilization","type":"broad"}],"termid":"GO:0048478"}


id: GO:0031605
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The subunits forming the outer ring of the core complex of a proteasome located in the endoplasmic reticulum of a cell.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete ER proteasome core complex, alpha-subunit complex (obsolete GO:0031605)","termid":"GO:0031605"}


id: PBO:0076679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor A1 pseudogene 4","termid":"PBO:0076679"}


id: PBO:0051815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 1 receptor associated kinase 1","termid":"PBO:0051815"}


id: PBO:0055284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2711","termid":"PBO:0055284"}


id: SO:0001938
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2A histone protein is acetylated.","definition_xrefs":["EBI:nj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_2A_acetylation_site","termid":"SO:0002142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H2AK5_acetylation_site","synonyms":[{"name":"H2AK5 acetylation site","type":"exact"},{"name":"H2AK5ac","type":"exact"}],"termid":"SO:0001938"}


id: PBO:0056704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meis homeobox 3 pseudogene 2","termid":"PBO:0056704"}


id: PBO:0030069
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_asparagine_import","termid":"PBO:0030069"}


id: MONDO:0021159
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An salpingitis caused by infection with Neisseria gonorrhoeae.","definition_xrefs":["MONDO:patterns/specific_infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"salpingitis","termid":"MONDO:0003619"},{"relation_name":"is_a","term_name":"gonorrhea","termid":"MONDO:0004277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gonococcal salpingitis","secondary_identifiers":["MEDGEN:574651","SCTID:237038001","UMLS:C0341811"],"synonyms":[{"name":"Neisseria gonorrhoeae caused salpingitis","type":"exact"},{"name":"Neisseria gonorrhoeae salpingitis","type":"exact"}],"termid":"MONDO:0021159","xrefs":{"Monarch":{"xref_id":"0021159"}}}


id: MONDO:0033631
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"combined oxidative phosphorylation deficiency","termid":"MONDO:0000732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"combined oxidative phosphorylation deficiency 51","secondary_identifiers":["DOID:0112137","UMLS:C5436703","OMIM:619057","MEDGEN:1757992"],"synonyms":[{"name":"COXPD51","type":"exact"}],"termid":"MONDO:0033631","xrefs":{"Monarch":{"xref_id":"0033631"}}}


id: PBO:0116785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YAP1 divergent transcript","termid":"PBO:0116785"}


id: MONDO:0003011
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A low grade carcinoma of the kidney characterized by the presence of tubules which are separated by mucinous stroma. Often the tubular structures have a spindle cell appearance. Patients are usually asymptomatic and occasionally they may present with hematuria or flank pain.","definition_xrefs":["NCIT:C39807"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal cell carcinoma","termid":"MONDO:0005086"},{"relation_name":"is_a","term_name":"renal tubule disorder","termid":"MONDO:0021568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240","MONDO:0004992"],"is_obsolete":false,"name":"mucinous tubular and spindle renal cell carcinoma","secondary_identifiers":["MEDGEN:1640204","ICDO:0000/0","GARD:21418","ONCOTREE:MTSCC","DOID:4472","SCTID:764990003","Orphanet:319322","UMLS:C4707257"],"synonyms":[{"name":"carcinoma, renal, tubular, malignant","type":"exact"},{"name":"mucinous tubular and spindle cell carcinoma of the kidney","type":"exact"},{"name":"mucinous tubular and spindle cell renal carcinoma","type":"exact"},{"name":"renal mucinous tubular spindle cell carcinoma","type":"related"}],"termid":"MONDO:0003011","xrefs":{"Monarch":{"xref_id":"0003011"}}}


id: PBO:0071247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 88","termid":"PBO:0071247"}


id: MONDO:0016027
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare genetic epilepsy syndrome characterized by the occurrence of afebrile seizures in otherwise healthy newborns with onset in the first few days of life.","definition_xrefs":["Orphanet:1949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neonatal epilepsy syndrome","termid":"MONDO:0020070"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"benign neonatal seizures","secondary_identifiers":["SCTID:279953009","OMIMPS:121200","SCTID:38281008","GARD:1519","DOID:14777","MEDGEN:65082","DOID:14264","SCTID:230410004","UMLS:C0220669","NCIT:C117307","MedDRA:10067866"],"synonyms":[{"name":"BFNS","type":"exact"},{"name":"benign familal neonatal seizures","type":"exact"},{"name":"benign familial convulsion","type":"exact"},{"name":"benign familial convulsions","type":"exact"},{"name":"benign familial neonatal convulsions","type":"exact"},{"name":"benign familial neonatal epilepsy","type":"exact"},{"name":"benign familial neonatal seizures","type":"exact"},{"name":"benign neonatal convulsions","type":"exact"},{"name":"familial neonatal seizures","type":"exact"},{"name":"seizures, benign familial neonatal","type":"exact"}],"termid":"MONDO:0016027","xrefs":{"Monarch":{"xref_id":"0016027"}}}


id: PBO:0046272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endomucin","termid":"PBO:0046272"}


id: GO:0044094
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any constituent part of a host cell's nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. The host is the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host intracellular part","termid":"GO:0033646"},{"relation_name":"part_of","term_name":"host cell nucleus","termid":"GO:0042025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell nuclear part","termid":"GO:0044094"}


id: GO:1904138
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of convergent extension involved in notochord morphogenesis.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:dph","PMID:24892953"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of convergent extension involved in gastrulation","termid":"GO:1904105"},{"relation_name":"is_a","term_name":"regulation of convergent extension involved in notochord morphogenesis","termid":"GO:1904136"},{"relation_name":"positively_regulates","term_name":"convergent extension involved in notochord morphogenesis","termid":"GO:1904126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of convergent extension involved in notochord morphogenesis","synonyms":[{"name":"activation of convergent extension involved in notochord morphogenesis","type":"narrow"},{"name":"up regulation of convergent extension involved in notochord morphogenesis","type":"exact"},{"name":"up-regulation of convergent extension involved in notochord morphogenesis","type":"exact"},{"name":"upregulation of convergent extension involved in notochord morphogenesis","type":"exact"}],"termid":"GO:1904138"}


id: PBO:0084728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane protein required for complex IV assembly; associates with complex IV assembly intermediates and complex III/complex IV supercomplexes; similar to human SURF1 involved in Leigh Syndrome; complex IV is also known as cytochrome c oxidase","termid":"PBO:0084728"}


id: MONDO:0030484
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency 89 and autoimmunity","secondary_identifiers":["UMLS:C5562027","MEDGEN:1794237","OMIM:619632"],"synonyms":[{"name":"IMD89","type":"exact"}],"termid":"MONDO:0030484","xrefs":{"Monarch":{"xref_id":"0030484"}}}


id: SO:0001017
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that does not affect protein function. Silent mutations may occur in genic ( CDS, UTR, intron etc) and intergenic regions. Silent mutations may have affects on processes such as splicing and regulation.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_variant","termid":"SO:0001878"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"silent_mutation","secondary_identifiers":["http://en.wikipedia.org/wiki/Silent_mutation","loinc:LA6700-4"],"synonyms":[{"name":"silent mutation","type":"exact"}],"termid":"SO:0001017"}


id: PBO:0090906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S3","termid":"PBO:0090906"}


id: PBO:0044579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DBI pseudogene 1","termid":"PBO:0044579"}


id: GO:0030200
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of heparan sulfate proteoglycans, which consist of a core protein linked to a heparan sulfate glycosaminoglycan. The heparan sulfate chain is composed of the repeating disaccharide unit beta-(1,4)-N-acetyl-D-glucosamine-alpha-(1,4)-hexuronic acid, the former being either sulfated or deacetylated on its amino group as well as sulfated on one of its hydroxyl groups, and the latter being a mixture of sulfated and nonsulfated D-glucuronic and L-iduronic acids.","definition_xrefs":["PMID:35536982"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteoglycan catabolic process","termid":"GO:0030167"},{"relation_name":"is_a","term_name":"heparan sulfate proteoglycan metabolic process","termid":"GO:0030201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"heparan sulfate proteoglycan catabolic process","secondary_identifiers":["Reactome:R-HSA-2024096"],"synonyms":[{"name":"heparan sulfate proteoglycan breakdown","type":"exact"},{"name":"heparan sulfate proteoglycan catabolism","type":"exact"},{"name":"heparan sulfate proteoglycan degradation","type":"exact"},{"name":"heparan sulphate proteoglycan catabolic process","type":"exact"},{"name":"heparan sulphate proteoglycan catabolism","type":"exact"},{"name":"heparin proteoglycan catabolic process","type":"related"}],"termid":"GO:0030200"}


id: PBO:0072709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RWD domain containing 3","termid":"PBO:0072709"}


id: PBO:0048078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin heavy chain like 18, pseudogene","termid":"PBO:0048078"}


id: MONDO:0021725
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Abderhalden-Kaufmann-Lignac syndrome (obsolete MONDO:0021725)","termid":"MONDO:0021725","xrefs":{"Monarch":{"xref_id":"0021725"}}}


id: PR:O13970
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 30S ribosomal protein S2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01278"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"37S ribosomal protein mrp4, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC24C9.10c","secondary_identifiers":["UniProtKB:O13970"],"synonyms":[{"name":"Spom972h-rpsB","type":"exact"}],"termid":"PR:O13970"}


id: GO:0019759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete glycosinolate catabolic process (obsolete GO:0019759)","synonyms":[{"name":"glycosinolate breakdown","type":"exact"},{"name":"glycosinolate catabolism","type":"exact"},{"name":"glycosinolate degradation","type":"exact"}],"termid":"GO:0019759"}


id: FYPO:0003682
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce an inviable cell that does not divide, is elongated, does not contain a septum, and contains more than one nucleus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable elongated multinucleate aseptate vegetative cell","termid":"FYPO:0002024"},{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division, elongated multinucleate cell","termid":"FYPO:0002912"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000032","FYPO:0000631","FYPO:0001320","FYPO:0000005","FYPO:0000004","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, elongated multinucleate aseptate cell","synonyms":[{"name":"inviable after spore germination, multinucleate aseptate elongated cell","type":"exact"},{"name":"inviable after spore germination, undivided elongated multinucleate aseptate cell","type":"exact"},{"name":"inviable following spore germination, without cell division, elongated multinucleate aseptate cell","type":"exact"},{"name":"inviable germinated spore, without cell division, elongated multinucleate aseptate cell","type":"exact"},{"name":"lethal after spore germination, without cell division, elongated multinucleate aseptate cell","type":"exact"}],"termid":"FYPO:0003682"}


id: MONDO:0000870
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute lymphoblastic leukemia occurring during childhood. The majority of cases are B-acute lymphoblastic leukemias. Approximately 15% of the cases are T-acute lymphoblastic leukemias.","definition_xrefs":["NCIT:C3168"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pediatric lymphoma","termid":"MONDO:0003659"},{"relation_name":"is_a","term_name":"childhood leukemia","termid":"MONDO:0004355"},{"relation_name":"is_a","term_name":"acute lymphoblastic leukemia","termid":"MONDO:0004967"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005570"],"is_obsolete":false,"name":"childhood acute lymphoblastic leukemia","secondary_identifiers":["DOID:0080144","UMLS:C0023452","GARD:9240","MEDGEN:44122"],"synonyms":[{"name":"acute lymphoblastic leukaemia (ALL)","type":"broad"},{"name":"acute lymphoblastic leukemia (ALL)","type":"broad"},{"name":"childhood ALL","type":"exact"},{"name":"childhood acute lymphoblastic leukemia","type":"exact"},{"name":"childhood acute lymphocytic leukaemia","type":"exact"},{"name":"childhood acute lymphocytic leukemia","type":"exact"},{"name":"childhood acute lymphogenous leukaemia","type":"exact"},{"name":"childhood acute lymphogenous leukemia","type":"exact"},{"name":"childhood acute lymphoid leukaemia","type":"exact"},{"name":"childhood acute lymphoid leukemia","type":"exact"},{"name":"childhood precursor lymphoblastic leukaemia","type":"exact"},{"name":"childhood precursor lymphoblastic leukemia","type":"exact"},{"name":"paediatric ALL","type":"exact"},{"name":"paediatric acute lymphoblastic leukaemia","type":"exact"},{"name":"paediatric acute lymphocytic leukaemia","type":"exact"},{"name":"paediatric acute lymphocytic leukaemia (ALL)","type":"exact"},{"name":"paediatric acute lymphogenous leukaemia","type":"exact"},{"name":"paediatric acute lymphoid leukaemia","type":"exact"},{"name":"pediatric ALL","type":"exact"},{"name":"pediatric acute lymphoblastic leukemia","type":"exact"},{"name":"pediatric acute lymphocytic leukemia","type":"exact"},{"name":"pediatric acute lymphocytic leukemia (ALL)","type":"exact"},{"name":"pediatric acute lymphogenous leukemia","type":"exact"},{"name":"pediatric acute lymphoid leukemia","type":"exact"}],"termid":"MONDO:0000870","xrefs":{"Monarch":{"xref_id":"0000870"}}}


id: MONDO:0009325
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete deafness-enamel hypoplasia-nail defects syndrome (obsolete MONDO:0009325)","termid":"MONDO:0009325","xrefs":{"Monarch":{"xref_id":"0009325"}}}


id: PBO:0039971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 4A pseudogene 2","termid":"PBO:0039971"}


id: PBO:0085866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; has similarity to Torpedo californica tCTL1p, which is postulated to be a choline transporter, neither null mutation nor overexpression affects choline transport","termid":"PBO:0085866"}


id: PBO:0029895
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-septated_vegetative_cell","termid":"PBO:0029895"}


id: PBO:0075387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SP2 antisense RNA 1","termid":"PBO:0075387"}


id: MONDO:0010577
data:
  {"annotated_genes":["SJAG_04882","SJAG_03811"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87218,87219],"is_not":false,"summary":null,"term":"MONDO:0010577"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked nonsyndromic hearing loss","termid":"MONDO:0019586"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03811":null,"SJAG_04882":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0019497"],"is_obsolete":false,"name":"hearing loss, X-linked 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:304500","DOID:0111739","MEDGEN:336749","MESH:C564433","UMLS:C1844677","GARD:18098"],"synonyms":[{"name":"DFNX1","type":"narrow"},{"name":"deafness, X-linked 1","type":"narrow"},{"name":"deafness, X-linked 2, sensorineural congenital","type":"narrow"},{"name":"deafness, X-linked type 1","type":"narrow"}],"termid":"MONDO:0010577","terms_by_termid":{"MONDO:0010577":null},"xrefs":{"Monarch":{"xref_id":"0010577"}}}


id: PBO:0003242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane-tethered transcription factor (predicted)","termid":"PBO:0003242"}


id: FYPO:0005666
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the amount, distribution, or morphology of all or part of the actin cytoskeleton is abnormal during one or both meiotic nuclear divisions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton","termid":"FYPO:0005665"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0004803"],"is_obsolete":false,"name":"abnormal actin cytoskeleton during meiosis","synonyms":[{"name":"abnormal actin cytoskeleton during meiotic nuclear division","type":"exact"},{"name":"abnormal actin cytoskeleton physical object quality during meiosis","type":"exact"}],"termid":"FYPO:0005666"}


id: PBO:0062901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidoreductase NAD binding domain containing 1","termid":"PBO:0062901"}


id: SO:0001148
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Site which has been experimentally altered.","definition_xrefs":["UniProt:curation_manual","EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_variation_site","termid":"SO:0001146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"mutated_variant_site","secondary_identifiers":["BS:00036"],"synonyms":[{"name":"mutagen","type":"exact"},{"name":"mutagenesis","type":"exact"},{"name":"mutated_site","type":"exact"}],"termid":"SO:0001148"}


id: PBO:0047542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor 7 pseudogene 1","termid":"PBO:0047542"}


id: PBO:0053593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 620","termid":"PBO:0053593"}


id: PBO:0086719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; non-essential gene identified in a screen for mutants affected in mannosylphophorylation of cell wall components","termid":"PBO:0086719"}


id: GO:0043637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving puromycin, 3'-deoxy-N,N-dimethyl-3'-(O-methyl-L-tyrosinamido)adenosine, an aminonucleoside antibiotic that is a potent inhibitor of translation; produced by the bacterium Streptomyces alboniger.","definition_xrefs":["Wikipedia:Puromycin","GOC:jl","PMID:8226694"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antibiotic metabolic process","termid":"GO:0016999"},{"relation_name":"is_a","term_name":"purine ribonucleoside metabolic process","termid":"GO:0046128"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"puromycin metabolic process","synonyms":[{"name":"puromycin metabolism","type":"exact"}],"termid":"GO:0043637"}


id: PBO:0004543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit Pmc4","termid":"PBO:0004543"}


id: PBO:0035818
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_gene_conversion_during_vegetative_growth","termid":"PBO:0035818"}


id: PBO:0091770
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"The Bioneer strain does not appear contain a deletion","termid":"PBO:0091770"}


id: PBO:0000165
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.3.2.1","termid":"PBO:0000165"}


id: GO:0034025
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + D-aspartate + [beta-GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)]n = [beta-GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-6-N-(beta-D-Asp)-L-Lys-D-Ala-D-Ala)]n + ADP + phosphate.","definition_xrefs":["EC:6.3.1.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-ammonia (or amide) ligase activity","termid":"GO:0016880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"D-aspartate ligase activity","secondary_identifiers":["RHEA:10752","MetaCyc:6.3.1.12-RXN"],"synonyms":[{"name":"D-aspartate:[beta-GlcNAc-(1->4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)]n ligase (ADP-forming) activity","type":"related"},{"name":"D-aspartic acid-activating enzyme","type":"related"},{"name":"UDP-MurNAc-pentapeptide:D-aspartate ligase activity","type":"related"},{"name":"aslfm","type":"related"}],"termid":"GO:0034025"}


id: MONDO:0100320
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A SARS-CoV-2-related disease that is caused by infection by SARS-CoV-2, and manifests after the original primary infection.","definition_xrefs":["PMID:32201335"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-viral disorder","termid":"MONDO:0021674"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"post-COVID-19 disorder","termid":"MONDO:0100320","xrefs":{"Monarch":{"xref_id":"0100320"}}}


id: GO:0102224
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-N,N'-diacetylbacillosamine + H2O = 2,4-diacetamido-2,4,6-trideoxy-alpha-D-mannopyranose + GDP + H+.","definition_xrefs":["RHEA:46316"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016798","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"GDP-2,4-diacetamido-2,4,6-trideoxy-alpha-D-glucopyranose hydrolase/2-epimerase activity","secondary_identifiers":["MetaCyc:RXN-12236"],"termid":"GO:0102224"}


id: PBO:0083920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Forms the dehydrodolichyl diphosphate synthase (DDS) complex with NUS1; major enzyme of polyprenol synthesis in both the endoplasmic reticulum (ER) and in lipid droplets; participates in ER protein sorting; human ortholog DHDDS functionally complements the heat sensitive growth defect of a ts allele, and is associated with retinitis pigmentosa","termid":"PBO:0083920"}


id: MONDO:0004242
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"peptic ulcer disease","termid":"MONDO:0004247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"active peptic ulcer disease","secondary_identifiers":["DOID:749","ICD9:578.9","MESH:D010438","SCTID:64121000","SCTID:74474003"],"synonyms":[{"name":"GI bleeding","type":"related"}],"termid":"MONDO:0004242","xrefs":{"Monarch":{"xref_id":"0004242"}}}


id: GO:0000122
data:
  {"annotated_genes":["SJAG_04613","SJAG_01199","SJAG_02730","SJAG_03319","SJAG_01000","SJAG_02858","SJAG_01254","SJAG_04268","SJAG_03473","SJAG_00861","SJAG_00926","SJAG_03081","SJAG_01157","SJAG_00441","SJAG_00142","SJAG_02255","SJAG_00124","SJAG_00163","SJAG_02981","SJAG_04026","SJAG_04584","SJAG_00266","SJAG_04607","SJAG_03067","SJAG_01804","SJAG_04539","SJAG_00792","SJAG_01799","SJAG_04249","SJAG_02048","SJAG_00410","SJAG_02752","SJAG_00996","SJAG_00802","SJAG_00969","SJAG_05343","SJAG_02846","SJAG_04921","SJAG_04312","SJAG_03845","SJAG_04039","SJAG_01680","SJAG_01728","SJAG_02104","SJAG_01311","SJAG_01230","SJAG_00987","SJAG_02385","SJAG_03143","SJAG_04381","SJAG_00290","SJAG_02444"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[58281,61721,71854,72288,73644,74180,74988,75437,75568,75795,76068,77115,78533,78916,81383,82255,89459,93071,93145,94029,94051,95187,95286,95635,95778,96125,96547,96631,98200,100812,102937,103795,105504,105905,106210,107779,107875,108222,108470,108702,108722,109950,110213,110555,111002,112718,113147,114096,114983,115843,116282,119399],"is_not":false,"summary":null,"term":"GO:0000122"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.","definition_xrefs":["GOC:go_curators","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transcription by RNA polymerase II","termid":"GO:0006357"},{"relation_name":"is_a","term_name":"negative regulation of DNA-templated transcription","termid":"GO:0045892"},{"relation_name":"negatively_regulates","term_name":"transcription by RNA polymerase II","termid":"GO:0006366"}],"gene_count":52,"genes_by_uniquename":{"SJAG_00124":null,"SJAG_00142":null,"SJAG_00163":null,"SJAG_00266":null,"SJAG_00290":null,"SJAG_00410":null,"SJAG_00441":null,"SJAG_00792":null,"SJAG_00802":null,"SJAG_00861":null,"SJAG_00926":null,"SJAG_00969":null,"SJAG_00987":null,"SJAG_00996":null,"SJAG_01000":null,"SJAG_01157":null,"SJAG_01199":null,"SJAG_01230":null,"SJAG_01254":null,"SJAG_01311":null,"SJAG_01680":null,"SJAG_01728":null,"SJAG_01799":null,"SJAG_01804":null,"SJAG_02048":null,"SJAG_02104":null,"SJAG_02255":null,"SJAG_02385":null,"SJAG_02444":null,"SJAG_02730":null,"SJAG_02752":null,"SJAG_02846":null,"SJAG_02858":null,"SJAG_02981":null,"SJAG_03067":null,"SJAG_03081":null,"SJAG_03143":null,"SJAG_03319":null,"SJAG_03473":null,"SJAG_03845":null,"SJAG_04026":null,"SJAG_04039":null,"SJAG_04249":null,"SJAG_04268":null,"SJAG_04312":null,"SJAG_04381":null,"SJAG_04539":null,"SJAG_04584":null,"SJAG_04607":null,"SJAG_04613":null,"SJAG_04921":null,"SJAG_05343":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006351","GO:0006355","GO:0010467"],"is_obsolete":false,"name":"negative regulation of transcription by RNA polymerase II","references_by_uniquename":{"GO_REF:0000024":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["Reactome:R-HSA-2173795","GO:0010553","GO:0045816","Reactome:R-HSA-8866904"],"synonyms":[{"name":"down regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"down regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"down-regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"down-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"downregulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"downregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"inhibition of global transcription from RNA polymerase II promoter","type":"related"},{"name":"inhibition of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of gene-specific transcription from RNA polymerase II promoter","type":"related"},{"name":"negative regulation of global transcription from Pol II promoter","type":"related"},{"name":"negative regulation of transcription from Pol II promoter","type":"exact"},{"name":"negative regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"negative regulation of transcription from RNA polymerase II promoter, global","type":"related"}],"termid":"GO:0000122","terms_by_termid":{"GO:0000122":null}}


id: PBO:0090147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall glucan endo-1,3-alpha-glucosidase Agn1","termid":"PBO:0090147"}


id: PBO:0075747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal recognition particle 72 pseudogene 2","termid":"PBO:0075747"}


id: MONDO:0008996
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A very rare subtype of Joubert syndrome and related disorders (JSRD) characterized by the neurological features of JS associated with congenital hepatic fibrosis (CHF).","definition_xrefs":["Orphanet:1454"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"disease","termid":"MONDO:0000001"},{"relation_name":"excluded_subClassOf","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"},{"relation_name":"excluded_subClassOf","term_name":"obsolete syndrome with a cerebellar malformation as major feature (obsolete MONDO:0017118)","termid":"MONDO:0017118"},{"relation_name":"excluded_subClassOf","term_name":"obsolete genetic multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome (obsolete MONDO:0043007)","termid":"MONDO:0043007"}],"gene_count":0,"genotype_count":0,"name":"obsolete COACH syndrome 1 (obsolete MONDO:0008996)","secondary_identifiers":["NANDO:1201050"],"termid":"MONDO:0008996","xrefs":{"Monarch":{"xref_id":"0008996"}}}


id: PBO:0083965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GID Complex regulatory subunit; binds GID Complex in response to glucose through interactions with complex member Vid28p; regulates fructose-1,6-bisphosphatase (FBPase) targeting to the vacuole; promotes proteasome-dependent catabolite degradation of FBPase; peripheral membrane protein located at Vid (vacuole import and degradation) vesicles","termid":"PBO:0083965"}


id: FYPO:0005583
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the cell contains higher levels of saturated fatty acids, and lower levels of unsaturated fatty acids, than normal.","definition_xrefs":["PomBase:mah","PMID:27053105"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vegetative cell phenotype","termid":"FYPO:0003755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased fatty acid saturation","synonyms":[{"name":"increased fatty acid saturation during mitotic cell cycle","type":"related"},{"name":"increased fatty acid saturation during vegetative growth","type":"exact"},{"name":"increased level of saturated fatty acids and decreased level of unsaturated fatty acids","type":"exact"},{"name":"increased saturated:unsaturated fatty acid ratio","type":"exact"}],"termid":"FYPO:0005583"}


id: PBO:0073045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small cysteine and glycine repeat containing 3","termid":"PBO:0073045"}


id: MONDO:0032854
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Zimmermann-Laband syndrome","termid":"MONDO:0000200"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zimmermann-laband syndrome 3","secondary_identifiers":["MEDGEN:1684740","OMIM:618658","GARD:16371","UMLS:C5231447"],"synonyms":[{"name":"ZIMMERMANN-LABAND SYNDROME 3","type":"related"},{"name":"ZLS3","type":"related"}],"termid":"MONDO:0032854","xrefs":{"Monarch":{"xref_id":"0032854"}}}


id: PBO:0026817
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_transcription_during_nitrogen_starvation","termid":"PBO:0026817"}


id: PBO:0051855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron-sulfur cluster assembly 1 pseudogene 1","termid":"PBO:0051855"}


id: PBO:0069615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 892, pseudogene","termid":"PBO:0069615"}


id: PBO:0090160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA turnover and ribosome assembly protein Mrt4","termid":"PBO:0090160"}


id: PBO:0060684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NDRG family member 4","termid":"PBO:0060684"}


id: PBO:0112467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase feature property types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gocam_id","termid":"PBO:0112467"}


id: PBO:0116807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMP1 and DSPP antisense RNA 1","termid":"PBO:0116807"}


id: PBO:0058956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAP kinase interacting serine/threonine kinase 2 pseudogene 1","termid":"PBO:0058956"}


id: PBO:0070938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 46","termid":"PBO:0070938"}


id: GO:0006779
data:
  {"annotated_genes":["SJAG_01841","SJAG_04944","SJAG_02876","SJAG_03961","SJAG_04515","SJAG_00626","SJAG_03173","SJAG_04109","SJAG_01192","SJAG_04397","SJAG_04984","SJAG_00699","SJAG_01786","SJAG_02896","SJAG_01155","SJAG_03862","SJAG_01372","SJAG_05283","SJAG_00097"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80180,81837],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006784"},{"annotations":[76082,100149,102178,107157,103033,113877,115889],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006783"},{"annotations":[81834,63905,65884,59470,60622,57225,63892,68920],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0006782"},{"annotations":[73119,78707],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019354"},{"annotations":[76697],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006780"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.","definition_xrefs":["Wikipedia:Porphyrin#Natural_formation","GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porphyrin-containing compound metabolic process","termid":"GO:0006778"},{"relation_name":"is_a","term_name":"tetrapyrrole biosynthetic process","termid":"GO:0033014"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00097":null,"SJAG_00626":null,"SJAG_00699":null,"SJAG_01155":null,"SJAG_01192":null,"SJAG_01372":null,"SJAG_01786":null,"SJAG_01841":null,"SJAG_02876":null,"SJAG_02896":null,"SJAG_03173":null,"SJAG_03862":null,"SJAG_03961":null,"SJAG_04109":null,"SJAG_04397":null,"SJAG_04515":null,"SJAG_04944":null,"SJAG_04984":null,"SJAG_05283":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"porphyrin-containing compound biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"porphyrin anabolism","type":"related"},{"name":"porphyrin biosynthesis","type":"related"},{"name":"porphyrin biosynthetic process","type":"related"},{"name":"porphyrin formation","type":"related"},{"name":"porphyrin synthesis","type":"related"}],"termid":"GO:0006779","terms_by_termid":{"GO:0006780":null,"GO:0006782":null,"GO:0006783":null,"GO:0006784":null,"GO:0019354":null}}


id: GO:0035461
data:
  {"annotated_genes":["SJAG_02780","SJAG_00835","SJAG_02152","SJAG_05175","SJAG_02779","SJAG_02962","SJAG_03808","SJAG_03652","SJAG_04673"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[81015,73551],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905135"},{"annotations":[105586],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990545"},{"annotations":[74231],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098717"},{"annotations":[92018,119497,120799,92019],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903090"},{"annotations":[120800,92020,92021,119498],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903091"},{"annotations":[119499,92023,92022,120801],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903092"},{"annotations":[102616],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140125"},{"annotations":[92024,92025],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071934"}]},"cv_name":"biological_process","definition":"The process in which a vitamin is transported across a membrane. A vitamin is one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin transport","termid":"GO:0051180"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00835":null,"SJAG_02152":null,"SJAG_02779":null,"SJAG_02780":null,"SJAG_02962":null,"SJAG_03652":null,"SJAG_03808":null,"SJAG_04673":null,"SJAG_05175":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"vitamin transmembrane transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"vitamin membrane transport","type":"exact"}],"termid":"GO:0035461","terms_by_termid":{"GO:0071934":null,"GO:0098717":null,"GO:0140125":null,"GO:1903090":null,"GO:1903091":null,"GO:1903092":null,"GO:1905135":null,"GO:1990545":null}}


id: GO:2001130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a methane from a trimethylamine.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amine metabolic process","termid":"GO:0009308"},{"relation_name":"is_a","term_name":"methanogenesis","termid":"GO:0015948"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"methane biosynthetic process from trimethylamine","termid":"GO:2001130"}


id: GO:0061862
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)pentan-1-one stimulus.","definition_xrefs":["PMID:19684855"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to stimulus","termid":"GO:0051716"},{"relation_name":"is_a","term_name":"response to differentiation-inducing factor 2","termid":"GO:1905960"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to differentiation-inducing factor 2","synonyms":[{"name":"cellular response to 1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)pentan-1-one","type":"exact"},{"name":"cellular response to DIF-2","type":"related"},{"name":"cellular response to DIF2","type":"related"}],"termid":"GO:0061862"}


id: PBO:0003032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine transporter (predicted)","termid":"PBO:0003032"}


id: PBO:0051512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IKAROS family zinc finger 2","termid":"PBO:0051512"}


id: PBO:0081434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 285D, pseudogene","termid":"PBO:0081434"}


id: GO:0031994
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to insulin-like growth factor I.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"insulin-like growth factor binding","termid":"GO:0005520"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"insulin-like growth factor I binding","synonyms":[{"name":"IGF-I binding","type":"exact"}],"termid":"GO:0031994"}


id: PBO:0052300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ketohexokinase","termid":"PBO:0052300"}


id: PBO:0000521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIH complex subunit Rad15","termid":"PBO:0000521"}


id: PBO:0053692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 887","termid":"PBO:0053692"}


id: PBO:0063879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class H","termid":"PBO:0063879"}


id: PBO:0077163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TLE family member 4, transcriptional corepressor","termid":"PBO:0077163"}


id: PBO:0045873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 beta 2 pseudogene 6","termid":"PBO:0045873"}


id: MONDO:0022851
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A severe form of Hallermann-Streiff syndrome, observed in one family. This is an n-of-1 use case where only one patient or family has been described with this disorder.","definition_xrefs":["PMID:8585575"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dennis-Fairhurst-Moore syndrome","secondary_identifiers":["Orphanet:2109","MEDGEN:419158","MESH:C538210","UMLS:C2931775","GARD:290"],"synonyms":[{"name":"Dennis Fairhurst Moore syndrome","type":"related"},{"name":"Hallermam Streiff like syndrome","type":"related"}],"termid":"MONDO:0022851","xrefs":{"Monarch":{"xref_id":"0022851"}}}


id: PBO:0040152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ASH2L pseudogene 1","termid":"PBO:0040152"}


id: GO:0061286
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the mesonephric capsule are generated and organized. The mesonephric capsule is the tough fibrous layer surrounding the mesonephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal capsule morphogenesis","termid":"GO:0072128"},{"relation_name":"part_of","term_name":"mesonephric capsule development","termid":"GO:0061285"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric capsule morphogenesis","termid":"GO:0061286"}


id: PBO:0002260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S15 (predicted)","termid":"PBO:0002260"}


id: FYPO:0006170
data:
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id: PBO:0041948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromobox 8","termid":"PBO:0041948"}


id: MONDO:0001064
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id: PBO:0036319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human NEDD4 family-interacting protein ortholog (predicted)","termid":"PBO:0036319"}


id: PBO:0040080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arylsulfatase B","termid":"PBO:0040080"}


id: GO:0003389
data:
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id: PR:Q09741
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A spermidine synthase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11558:SF11","PRO:DNx","OMA:SCHPO03285"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermidine synthase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC12C2.07c","secondary_identifiers":["UniProtKB:Q09741"],"synonyms":[{"name":"SPDSY (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SRM","type":"exact"},{"name":"putrescine aminopropyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09741"}


id: PBO:0053735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 957","termid":"PBO:0053735"}


id: PBO:0048730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate dehydrogenase 1","termid":"PBO:0048730"}


id: GO:0048523
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id: GO:1990612
data:
  {"annotated_genes":["SJAG_05196","SJAG_01538"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[98638,104764],"is_not":false,"summary":null,"term":"GO:1990612"}]},"cv_name":"cellular_component","definition":"A LINC complex implicated in the connection of DNA double strand breaks to the cytoskeleton during DNA double-strand break repair.","definition_xrefs":["PMID:24947240","GOC:vw","PMID:24943839"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic nuclear membrane microtubule tethering complex","termid":"GO:0034993"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01538":null,"SJAG_05196":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"Sad1-Kms1 LINC complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990612","terms_by_termid":{"GO:1990612":null}}


id: PBO:0072028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S9 pseudogene 4","termid":"PBO:0072028"}


id: FYPO:0008167
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to trolox. Cells stop growing (and may die) at a concentration of trolox that allows wild type cells to grow.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000003","FYPO:0002683","FYPO:0000139"],"is_obsolete":false,"name":"sensitivite to trolox","termid":"FYPO:0008167"}


id: PBO:0070575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 41","termid":"PBO:0070575"}


id: MONDO:0020475
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"dermotrichic syndrome","secondary_identifiers":["GARD:19683","UMLS:C0795919","MEDGEN:1672480","Orphanet:99688"],"termid":"MONDO:0020475","xrefs":{"Monarch":{"xref_id":"0020475"}}}


id: PBO:0017667
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"new inducer of mitosis","termid":"PBO:0017667"}


id: GO:0018988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The periodic shedding of part or all of a protein-based cuticle, which is then replaced by a new protein-based cuticle. A cuticle is the outer layer of an animal which acts to prevent water loss.","definition_xrefs":["GOC:mtg_sensu","GOC:ems"],"gene_count":0,"genotype_count":0,"name":"obsolete molting cycle, protein-based cuticle (obsolete GO:0018988)","synonyms":[{"name":"protein-based cuticle molting cycle","type":"exact"}],"termid":"GO:0018988"}


id: PBO:0005673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uricase (predicted)","termid":"PBO:0005673"}


id: GO:0005029
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete CD27 receptor activity (obsolete GO:0005029)","synonyms":[{"name":"CD27 receptor activity","type":"exact"}],"termid":"GO:0005029"}


id: PBO:0063878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class G","termid":"PBO:0063878"}


id: RO:0002570
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x is a conduit for y iff y overlaps through the lumen_of of x, and y has parts on either side of the lumen of x.","direct_ancestors":[{"relation_name":"is_a","term_name":"overlaps","termid":"RO:0002131"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conduit_for","termid":"RO:0002570"}


id: PBO:0063927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PIK3R5 divergent transcript","termid":"PBO:0063927"}


id: PR:Q9C1W6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC713.09 gene.","definition_xrefs":["UniProtKB:Q9C1W6","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C713.09 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC713.09","synonyms":[{"name":"Spom972h-SPBC713.09","type":"exact"}],"termid":"PR:Q9C1W6"}


id: MONDO:1011108
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cryptorchidism that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cryptorchidism, non-human animal","termid":"MONDO:1010275"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cryptorchidism, dog","secondary_identifiers":["OMIA:000243-9615"],"termid":"MONDO:1011108","xrefs":{"Monarch":{"xref_id":"1011108"}}}


id: GO:0008727
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-alpha-D-mannose + H2O = GDP + D-mannose + H+.","definition_xrefs":["MetaCyc:GDPMANMANHYDRO-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannosidase activity","termid":"GO:0015923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0016798","GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"GDP-mannose mannosyl hydrolase activity","secondary_identifiers":["RHEA:28102"],"termid":"GO:0008727"}


id: MONDO:1011631
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stringhalt, non-human animal","secondary_identifiers":["OMIA:000950"],"termid":"MONDO:1011631","xrefs":{"Monarch":{"xref_id":"1011631"}}}


id: PBO:0073898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 13 member 4","termid":"PBO:0073898"}


id: PBO:0035926
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-bent_cell","termid":"PBO:0035926"}


id: GO:0047390
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sn-glycero-3-phosphocholine + H2O = choline phosphate + glycerol + H+.","definition_xrefs":["RHEA:19545","EC:3.1.4.38"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoric diester hydrolase activity","termid":"GO:0008081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0016788","GO:0003824"],"is_obsolete":false,"name":"glycerophosphocholine cholinephosphodiesterase activity","secondary_identifiers":["MetaCyc:3.1.4.38-RXN","KEGG_REACTION:R02591","Reactome:R-HSA-6814797"],"synonyms":[{"name":"L-3-glycerylphosphinicocholine cholinephosphohydrolase activity","type":"related"},{"name":"sn-glycero-3-phosphocholine cholinephosphohydrolase activity","type":"related"}],"termid":"GO:0047390"}


id: PBO:0079151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSPAN11 antisense RNA 1","termid":"PBO:0079151"}


id: MONDO:0000030
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"frontal lobe epilepsy","termid":"MONDO:0002612"},{"relation_name":"is_a","term_name":"familial partial epilepsy","termid":"MONDO:0017704"},{"relation_name":"is_a","term_name":"variable-age onset focal epilepsy syndrome","termid":"MONDO:0800492"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"sleep-related hypermotor epilepsy","secondary_identifiers":["UMLS:C4313718","MEDGEN:937685","OMIMPS:600513"],"synonyms":[{"name":"SHE","type":"exact"},{"name":"epilepsy, nocturnal frontal lobe","type":"exact"},{"name":"sleep-related hyperkinetic epilepsy","type":"exact"},{"name":"sleep-related hypermotor epilepsy","type":"exact"}],"termid":"MONDO:0000030","xrefs":{"Monarch":{"xref_id":"0000030"}}}


id: GO:1900661
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of emericellamide A biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of emericellamide biosynthetic process","termid":"GO:1900658"},{"relation_name":"regulates","term_name":"emericellamide A biosynthetic process","termid":"GO:1900617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"regulation of emericellamide A biosynthetic process","synonyms":[{"name":"regulation of emericellamide A anabolism","type":"exact"},{"name":"regulation of emericellamide A biosynthesis","type":"exact"},{"name":"regulation of emericellamide A formation","type":"exact"},{"name":"regulation of emericellamide A synthesis","type":"exact"}],"termid":"GO:1900661"}


id: GO:0045807
data:
  {"annotated_genes":["SJAG_00845"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105646],"is_not":false,"summary":null,"term":"GO:0045807"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of endocytosis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endocytosis","termid":"GO:0030100"},{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"positively_regulates","term_name":"endocytosis","termid":"GO:0006897"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00845":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of endocytosis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of endocytosis","type":"narrow"},{"name":"stimulation of endocytosis","type":"narrow"},{"name":"up regulation of endocytosis","type":"exact"},{"name":"up-regulation of endocytosis","type":"exact"},{"name":"upregulation of endocytosis","type":"exact"}],"termid":"GO:0045807","terms_by_termid":{"GO:0045807":null}}


id: PBO:0029918
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_lanosterol_level","termid":"PBO:0029918"}


id: GO:0042122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of alginic acid, a hydrophilic polysaccharide occurring in, for example, the cell walls of brown algae (brown seaweeds).","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide catabolic process","termid":"GO:0000272"},{"relation_name":"is_a","term_name":"alginic acid metabolic process","termid":"GO:0042120"},{"relation_name":"is_a","term_name":"carboxylic acid catabolic process","termid":"GO:0046395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"alginic acid catabolic process","synonyms":[{"name":"alginate catabolic process","type":"exact"},{"name":"alginate catabolism","type":"exact"},{"name":"alginic acid breakdown","type":"exact"},{"name":"alginic acid catabolism","type":"exact"},{"name":"alginic acid degradation","type":"exact"}],"termid":"GO:0042122"}


id: GO:0018968
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of tetrahydrofuran, a cyclic 4 carbon ether. It is one of the most polar ethers and is a widely used solvent for polar reagents. Since THF is very soluble in water and has a relatively low boiling point, significant amounts are often released into the environment, causing contamination problems.","definition_xrefs":["PMID:12632259","PMID:33362743","PMID:35108100"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic metabolic process","termid":"GO:0006805"},{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"epoxide metabolic process","termid":"GO:0097176"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"tetrahydrofuran catabolic process","secondary_identifiers":["UM-BBD_pathwayID:thf"],"synonyms":[{"name":"THF metabolic process","type":"broad"},{"name":"THF metabolism","type":"broad"},{"name":"tetrahydrofuran metabolic process","type":"broad"},{"name":"tetrahydrofuran metabolism","type":"broad"}],"termid":"GO:0018968"}


id: PBO:0109455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1341, pseudogene","termid":"PBO:0109455"}


id: GO:0071055
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha9-beta1 integrin complex bound to the transmembrane metallopeptidase ADAM9.","definition_xrefs":["PMID:11882657"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"alpha9-beta1 integrin-ADAM9 complex","synonyms":[{"name":"ITGA9-ITGB1-ADAM9 complex","type":"narrow"}],"termid":"GO:0071055"}


id: GO:1903548
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of growth hormone activity.","definition_xrefs":["PMID:3068266","GOC:mr","GOC:TermGenie","GO_REF:0000059"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of growth hormone activity (obsolete GO:1903548)","synonyms":[{"name":"down regulation of GH activity","type":"exact"},{"name":"down regulation of growth hormone activity","type":"exact"},{"name":"down regulation of pituitary growth hormone activity","type":"narrow"},{"name":"down regulation of placental growth hormone activity","type":"narrow"},{"name":"down-regulation of GH activity","type":"exact"},{"name":"down-regulation of growth hormone activity","type":"exact"},{"name":"down-regulation of pituitary growth hormone activity","type":"narrow"},{"name":"down-regulation of placental growth hormone activity","type":"narrow"},{"name":"downregulation of GH activity","type":"exact"},{"name":"downregulation of growth hormone activity","type":"exact"},{"name":"downregulation of pituitary growth hormone activity","type":"narrow"},{"name":"downregulation of placental growth hormone activity","type":"narrow"},{"name":"inhibition of GH activity","type":"narrow"},{"name":"inhibition of growth hormone activity","type":"narrow"},{"name":"inhibition of pituitary growth hormone activity","type":"narrow"},{"name":"inhibition of placental growth hormone activity","type":"narrow"},{"name":"negative regulation of GH activity","type":"exact"},{"name":"negative regulation of pituitary growth hormone activity","type":"narrow"},{"name":"negative regulation of placental growth hormone activity","type":"narrow"}],"termid":"GO:1903548"}


id: GO:0060912
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process involved in the specification of cardiac cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate specification","termid":"GO:0001708"},{"relation_name":"part_of","term_name":"cardiac cell fate commitment","termid":"GO:0060911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac cell fate specification","synonyms":[{"name":"cardiocyte cell fate specification","type":"exact"}],"termid":"GO:0060912"}


id: PBO:0083166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps verified ORF MAK3/YPR051W","termid":"PBO:0083166"}


id: GO:0001656
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine.","definition_xrefs":["ISBN:0192800752","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney development","termid":"GO:0001822"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephros development","termid":"GO:0001656"}


id: GO:0034301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell gives rise to an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. Endospores are produced by some low G+C Gram-positive bacteria in response to harsh conditions.","definition_xrefs":["GOC:mah","GOC:ds","ISBN:0470090278"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asexual sporulation resulting in formation of a cellular spore","termid":"GO:0043936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endospore formation","termid":"GO:0034301"}


id: PBO:0079576
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin D pseudogene 1","termid":"PBO:0079576"}


id: PBO:0076588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 10A","termid":"PBO:0076588"}


id: PBO:0042193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin D3","termid":"PBO:0042193"}


id: PBO:0046170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ELFN1 antisense RNA 1","termid":"PBO:0046170"}


id: PBO:0028879
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_histone_H2B-K119_ubiquitination","termid":"PBO:0028879"}


id: GO:0046318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucosylceramide.","definition_xrefs":["GOC:ascb_2009","GOC:ai","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glucosylceramide biosynthetic process","termid":"GO:0046317"},{"relation_name":"is_a","term_name":"negative regulation of ceramide biosynthetic process","termid":"GO:1900060"},{"relation_name":"negatively_regulates","term_name":"glucosylceramide biosynthetic process","termid":"GO:0006679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0006629"],"is_obsolete":false,"name":"negative regulation of glucosylceramide biosynthetic process","synonyms":[{"name":"down regulation of glucosylceramide biosynthetic process","type":"exact"},{"name":"down-regulation of glucosylceramide biosynthetic process","type":"exact"},{"name":"downregulation of glucosylceramide biosynthetic process","type":"exact"},{"name":"inhibition of glucosylceramide biosynthetic process","type":"narrow"},{"name":"negative regulation of glucosylceramide anabolism","type":"exact"},{"name":"negative regulation of glucosylceramide biosynthesis","type":"exact"},{"name":"negative regulation of glucosylceramide formation","type":"exact"},{"name":"negative regulation of glucosylceramide synthesis","type":"exact"}],"termid":"GO:0046318"}


id: PBO:0049582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3.7 histone (putative)","termid":"PBO:0049582"}


id: PBO:0041921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbonyl reductase 4","termid":"PBO:0041921"}


id: GO:0008519
data:
  {"annotated_genes":["SJAG_04731","SJAG_04136"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71583,77133],"is_not":false,"summary":null,"term":"GO:0008519"}]},"cv_name":"molecular_function","definition":"Enables the energy-independent facilitated diffusion of ammonium through a transmembrane aqueous pore or channel.","definition_xrefs":["PMID:17710640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"channel activity","termid":"GO:0015267"},{"relation_name":"is_a","term_name":"inorganic cation transmembrane transporter activity","termid":"GO:0022890"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04136":null,"SJAG_04731":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"ammonium channel activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-444416","GO:0015251","TC:1.A.11","Reactome:R-HSA-444393","GO:0051739","Reactome:R-HSA-446277","Reactome:R-HSA-446278","MetaCyc:RXN-9615","Reactome:R-HSA-444419","Reactome:R-HSA-5623051"],"synonyms":[{"name":"ammonia transmembrane transporter activity","type":"broad"},{"name":"ammonium transmembrane transporter activity","type":"broad"}],"termid":"GO:0008519","terms_by_termid":{"GO:0008519":null}}


id: GO:1902204
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hepatocyte growth factor receptor signaling pathway.","definition_xrefs":["PMID:18819921","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of hepatocyte growth factor receptor signaling pathway","termid":"GO:1902202"},{"relation_name":"positively_regulates","term_name":"hepatocyte growth factor receptor signaling pathway","termid":"GO:0048012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of hepatocyte growth factor receptor signaling pathway","synonyms":[{"name":"activation of HGF receptor signaling pathway","type":"exact"},{"name":"activation of HGF receptor signalling pathway","type":"exact"},{"name":"activation of Met signaling pathway","type":"narrow"},{"name":"activation of hepatocyte growth factor receptor signaling pathway","type":"narrow"},{"name":"positive regulation of HGF receptor signaling pathway","type":"exact"},{"name":"positive regulation of HGF receptor signalling pathway","type":"exact"},{"name":"positive regulation of Met signaling pathway","type":"narrow"},{"name":"up regulation of HGF receptor signaling pathway","type":"exact"},{"name":"up regulation of HGF receptor signalling pathway","type":"exact"},{"name":"up regulation of Met signaling pathway","type":"narrow"},{"name":"up regulation of hepatocyte growth factor receptor signaling pathway","type":"exact"},{"name":"up-regulation of HGF receptor signaling pathway","type":"exact"},{"name":"up-regulation of HGF receptor signalling pathway","type":"exact"},{"name":"up-regulation of Met signaling pathway","type":"narrow"},{"name":"up-regulation of hepatocyte growth factor receptor signaling pathway","type":"exact"},{"name":"upregulation of HGF receptor signaling pathway","type":"exact"},{"name":"upregulation of HGF receptor signalling pathway","type":"exact"},{"name":"upregulation of Met signaling pathway","type":"narrow"},{"name":"upregulation of hepatocyte growth factor receptor signaling pathway","type":"exact"}],"termid":"GO:1902204"}


id: MONDO:0009853
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Imerslund-Grasbeck syndrome (IGS) or selective vitamin B12 (cobalamin) malabsorption with proteinuria is a rare autosomal recessive disorder characterized by vitamin B12 deficiency commonly resulting in megaloblastic anemia, which is responsive to parenteral vitamin B12 therapy and appears in childhood.","definition_xrefs":["Orphanet:35858"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"is_a","term_name":"megaloblastic anemia","termid":"MONDO:0001700"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary anemia","termid":"MONDO:0016624"},{"relation_name":"is_a","term_name":"inborn disorder of cobalamin metabolism and transport","termid":"MONDO:0019220"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005570","MONDO:0002280"],"is_obsolete":false,"name":"Imerslund-Grasbeck syndrome","secondary_identifiers":["ICD9:281.3","icd11.foundation:375969525","UMLS:C4551825","SCTID:360495000","MESH:C538556","OMIMPS:261100","GARD:7006","MEDGEN:1640347"],"synonyms":[{"name":"Gräsbeck-Imerslund disease","type":"related"},{"name":"Imerslund-Grasbeck syndrome","type":"exact"},{"name":"Imerslund-Gräsbeck syndrome","type":"exact"},{"name":"defect of enterocyte intrinsic factor receptor","type":"related"},{"name":"enterocyte cobalamin malabsorption","type":"related"},{"name":"familial megaloblastic anaemia","type":"exact"},{"name":"familial megaloblastic anemia","type":"exact"},{"name":"juvenile megaloblastic Anaemia","type":"exact"},{"name":"juvenile megaloblastic Anemia","type":"exact"},{"name":"selective cobalamin malabsorption with proteinuria","type":"exact"}],"termid":"MONDO:0009853","xrefs":{"Monarch":{"xref_id":"0009853"}}}


id: PBO:0116704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily T member 7 (gene/pseudogene)","termid":"PBO:0116704"}


id: MONDO:0005529
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete methylmalonic aciduria and homocystinuria type cblG (obsolete MONDO:0005529)","termid":"MONDO:0005529","xrefs":{"Monarch":{"xref_id":"0005529"}}}


id: PBO:0063643
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase 1","termid":"PBO:0063643"}


id: MONDO:0001798
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"arthropathy","termid":"MONDO:0006816"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypermobility syndrome","secondary_identifiers":["UMLS:C0152093","DOID:13781","MEDGEN:508885","ICD10CM:M35.7","ICD9:728.5","SCTID:85551004"],"synonyms":[{"name":"benign joint hypermobility","type":"exact"}],"termid":"MONDO:0001798","xrefs":{"Monarch":{"xref_id":"0001798"}}}


id: PBO:0087623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the CSN and 26S proteasome lid complexes; similar to mammalian p55 subunit and to another S. cerevisiae regulatory subunit, Rpn7p; Rpn5p is an essential protein; the COP9 signalosome is also known as the CSN","termid":"PBO:0087623"}


id: PBO:0063615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prefoldin subunit 6","termid":"PBO:0063615"}


id: PBO:0079157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetraspanin 16","termid":"PBO:0079157"}


id: PBO:0034221
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_muscle_insertion","termid":"PBO:0034221"}


id: PBO:0108894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL7L1 pseudogene 7","termid":"PBO:0108894"}


id: GO:0019230
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events by which an organism senses the position, location, orientation, and movement of the body and its parts. Proprioception is mediated by proprioceptors, sensory nerve terminals found in muscles, tendons, and joint capsules, which give information concerning movements and position of the body. The receptors in the labyrinth are sometimes also considered proprioceptors.","definition_xrefs":["ISBN:072168677X"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception","termid":"GO:0007600"},{"relation_name":"part_of","term_name":"neuromuscular process controlling posture","termid":"GO:0050884"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"proprioception","secondary_identifiers":["Wikipedia:Proprioception"],"termid":"GO:0019230"}


id: PBO:0075903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4","termid":"PBO:0075903"}


id: GO:0030104
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involved in the maintenance of an internal steady state of water within an organism or cell.","definition_xrefs":["GOC:dph","GOC:mah","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete water homeostasis (obsolete GO:0030104)","secondary_identifiers":["Wikipedia:Osmoregulation"],"synonyms":[{"name":"osmoregulation","type":"related"},{"name":"regulation of osmotic pressure","type":"exact"}],"termid":"GO:0030104"}


id: FYPO:0000559
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the rate, or speed, of re-entry into the mitotic cell cycle after pheromone arrest is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal re-entry into mitotic cell cycle after pheromone arrest","termid":"FYPO:0000555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000631","FYPO:0000298","FYPO:0005447"],"is_obsolete":false,"name":"increased rate of re-entry into mitotic cell cycle after pheromone arrest","synonyms":[{"name":"increased rate of recovery from pheromone-induced cell cycle arrest","type":"exact"},{"name":"recovery from pheromone-induced cell cycle arrest: increased rate","type":"related"}],"termid":"FYPO:0000559"}


id: GO:0045887
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of synaptic assembly at neuromuscular junction.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synaptic assembly at neuromuscular junction","termid":"GO:0008582"},{"relation_name":"is_a","term_name":"positive regulation of developmental growth","termid":"GO:0048639"},{"relation_name":"is_a","term_name":"positive regulation of synapse assembly","termid":"GO:0051965"},{"relation_name":"is_a","term_name":"positive regulation of neuromuscular junction development","termid":"GO:1904398"},{"relation_name":"positively_regulates","term_name":"synaptic assembly at neuromuscular junction","termid":"GO:0051124"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of synaptic assembly at neuromuscular junction","synonyms":[{"name":"activation of synaptic growth at neuromuscular junction","type":"narrow"},{"name":"positive regulation of synaptic growth at neuromuscular junction","type":"related"},{"name":"stimulation of synaptic growth at neuromuscular junction","type":"narrow"},{"name":"up regulation of synaptic growth at neuromuscular junction","type":"exact"},{"name":"up-regulation of synaptic growth at neuromuscular junction","type":"exact"},{"name":"upregulation of synaptic growth at neuromuscular junction","type":"exact"}],"termid":"GO:0045887"}


id: MONDO:0024429
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorienting neuropsychological condition that affects perception. People experience size distortion such as micropsia, macropsia, pelopsia, or teleopsia. Size distortion may occur of other sensory modalities.","definition_xrefs":["Wikipedia:Alice_in_Wonderland_syndrome"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"vision disorder","termid":"MONDO:0021084"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alice in Wonderland syndrome","secondary_identifiers":["MEDGEN:473310","NCIT:C116362","MESH:D062026","UMLS:C0854348"],"termid":"MONDO:0024429","xrefs":{"Monarch":{"xref_id":"0024429"}}}


id: PBO:0003133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argininosuccinate lyase","termid":"PBO:0003133"}


id: PBO:0088691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CBF/Mak21 family Noc4","termid":"PBO:0088691"}


id: MONDO:0019905
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ring chromosome 9 syndrome is an autosomal anomaly characterized by variable clinical features, most commonly including developmental delay, some degree of intellectual disability, facial dysmorphism, microcephaly, congenital heart anomalies, and variable genital, limb and skeletal anomalies.","definition_xrefs":["Orphanet:96173"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 9 disorder","termid":"MONDO:0700016"},{"relation_name":"is_a","term_name":"ring chromosome disorder","termid":"MONDO:0700091"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring chromosome 9","secondary_identifiers":["MEDGEN:539244","MESH:C538022","NORD:962","SCTID:60650002","GARD:1348","UMLS:C0265430"],"synonyms":[{"name":"Chromosome 9 Ring","type":"exact"},{"name":"Ring 9","type":"exact"},{"name":"Ring chromosome 9 syndrome","type":"related"},{"name":"Ring chromosome type 9","type":"exact"},{"name":"chromosome 9 ring","type":"related"},{"name":"r9","type":"related"}],"termid":"MONDO:0019905","xrefs":{"Monarch":{"xref_id":"0019905"}}}


id: PBO:0045390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPP10 antisense RNA 1","termid":"PBO:0045390"}


id: GO:1901904
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of tyrocidine.","definition_xrefs":["GOC:TermGenie","UniPathway:UPA00180","GOC:yaf","PMID:9352938"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"tyrocidine metabolic process","termid":"GO:1901902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tyrocidine biosynthetic process","synonyms":[{"name":"tyrocidine anabolism","type":"exact"},{"name":"tyrocidine biosynthesis","type":"exact"},{"name":"tyrocidine formation","type":"exact"},{"name":"tyrocidine synthesis","type":"exact"}],"termid":"GO:1901904"}


id: FYPO:0006867
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[121283],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"}],"single_locus_phenotype":[{"annotations":[121302,121301],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000731"},{"annotations":[121280,121272,121273,121284],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the cell cortex is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell periphery","termid":"FYPO:0006533"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01143":null,"SJAG_01665":null,"SJAG_02392":null,"SJAG_03596":null,"SJAG_03703":null,"SJAG_04498":null},"genotype_count":3,"genotypes_by_uniquename":{"mid1delta":{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},"mid1delta__pom1delta":{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_01143","SJAG_02392"],"name":"abnormal protein localization to cell cortex","references_by_uniquename":{"PMID:25866389":null},"single_locus_annotated_genes":["SJAG_02392","SJAG_01143"],"single_locus_genotype_uniquenames":["pom1delta","mid1delta"],"synonyms":[{"name":"abnormal protein localisation to cell cortex","type":"exact"}],"termid":"FYPO:0006867","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0000731":null,"FYPO:0007177":null,"FYPO_EXT:0000001":null}}


id: PBO:0059284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L41","termid":"PBO:0059284"}


id: PBO:0072678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rubicon like autophagy enhancer","termid":"PBO:0072678"}


id: MONDO:0008876
data:
  {"annotated_genes":["SJAG_03898"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88851],"is_not":false,"summary":null,"term":"MONDO:0008876"}]},"cv_name":"mondo","definition":"Bloom syndrome (BSyn) is a rare chromosomal breakage syndrome characterized by a marked genetic instability associated with pre- and postnatal growth retardation, facial sun-sensitive telangiectatic erythema, increased susceptibility to infections, and predisposition to cancer.","definition_xrefs":["Orphanet:125"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hematologic disorder","termid":"MONDO:0005570"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"hereditary photodermatosis","termid":"MONDO:0015951"},{"relation_name":"is_a","term_name":"chromosomal disorder","termid":"MONDO:0019040"},{"relation_name":"is_a","term_name":"microcephaly, growth restriction and increased sister chromatid exchange","termid":"MONDO:0020629"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03898":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005570","MONDO:0006025"],"is_obsolete":false,"name":"Bloom syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICD9:757.39","MEDGEN:2685","GARD:915","NANDO:2200707","UMLS:C0005859","icd11.foundation:1838213890","ICD10CM:Q82.2","NORD:863","DOID:2717","NANDO:1200333","NCIT:C2903","OMIM:210900","SCTID:4434006","MESH:D001816"],"synonyms":[{"name":"BLM","type":"related"},{"name":"BLS","type":"related"},{"name":"BS","type":"related"},{"name":"BSyn","type":"exact"},{"name":"Bloom syndrome","type":"exact"},{"name":"Bloom-Torre-Machacek syndrome","type":"exact"},{"name":"MGRISCE1","type":"related"},{"name":"congenital telangiectatic erythema","type":"related"},{"name":"congenital telangiectatic erythema syndrome","type":"exact"},{"name":"growth deficiency, sun-sensitive, telangiectatic, hypo and hyperpigmented skin, predisposition to malignancy and chromosomal instability","type":"related"},{"name":"microcephaly, growth restriction, and increased sister chromatid exchange 1","type":"related"}],"termid":"MONDO:0008876","terms_by_termid":{"MONDO:0008876":null},"xrefs":{"Monarch":{"xref_id":"0008876"}}}


id: MONDO:0003947
data:
  {"annotated_genes":["SJAG_02528"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86892],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011971"}]},"cv_name":"mondo","definition":"A primary immune deficiency disorder characterized by defective CD40 signaling; via B cells affecting class switch recombination (CSR) and somatic hypermutation.","definition_xrefs":["Wikipedia:Hyper_IgM_syndrome"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperimmunoglobulin syndrome","termid":"MONDO:0002468"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02528":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"hyper-IgM syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:82286005","MESH:D053306","NANDO:1200345","NCIT:C84783","UMLS:C0272236","ICD9:279.05","OMIMPS:308230","DOID:0080544","MEDGEN:124420","NCIT:C3990","NANDO:2200718"],"synonyms":[{"name":"hyperimmunoglobulin M syndrome","type":"related"},{"name":"immunodeficiency with hyper-IgM","type":"exact"}],"termid":"MONDO:0003947","terms_by_termid":{"MONDO:0011971":null},"xrefs":{"Monarch":{"xref_id":"0003947"}}}


id: GO:0036290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The phosphorylation by a protein of a residue on an identical protein. For example, phosphorylation by the other kinase within a homodimer.","definition_xrefs":["PMID:20516151","GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein autophosphorylation","termid":"GO:0046777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein trans-autophosphorylation","synonyms":[{"name":"trans-autophosphorylation","type":"exact"}],"termid":"GO:0036290"}


id: MONDO:0015394
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Nasal encephalocele is an extracranial herniation of intracranial contents (that maintain a connection to the subarachnoid space) into the fonticulus frontalis, presenting with nasal broadening and/or as a compressible, blue, pulsatile mass near the nasal bridge (that enlarges on crying or with jugular vein compression) or as an intranasal mass originating in the cribiform plate and that can cause nasal obstruction or respiratory distress. Hydrocephalus and increased intracranial pressure are also reported in some cases.","definition_xrefs":["Orphanet:141118"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isolated encephalocele","termid":"MONDO:0016057"},{"relation_name":"is_a","term_name":"otorhinolaryngologic disease","termid":"MONDO:0024623"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"nasal encephalocele","secondary_identifiers":["GARD:19951","MEDGEN:507680","icd11.foundation:884932601","SCTID:65455002","UMLS:C0014066"],"termid":"MONDO:0015394","xrefs":{"Monarch":{"xref_id":"0015394"}}}


id: PBO:0067090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 126, pseudogene","termid":"PBO:0067090"}


id: PBO:0044029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CS pseudogene 3","termid":"PBO:0044029"}


id: MONDO:0017677
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"punctate palmoplantar keratoderma","termid":"MONDO:0017675"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"focal acral hyperkeratosis","secondary_identifiers":["Orphanet:308013","GARD:21299","SCTID:400115004","UMLS:C1302839","MEDGEN:724380"],"synonyms":[{"name":"PPKP3 without elastoidosis","type":"exact"},{"name":"PPPK3 without elastoidosis","type":"exact"},{"name":"punctate palmoplantar hyperkeratosis type 3 without elastoidosis","type":"exact"},{"name":"punctate palmoplantar keratoderma type 3 without elastoidosis","type":"exact"}],"termid":"MONDO:0017677","xrefs":{"Monarch":{"xref_id":"0017677"}}}


id: FYPO:0000043
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which glucan biosynthesis is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process phenotype during vegetative growth","termid":"FYPO:0001331"},{"relation_name":"is_a","term_name":"abnormal glucan synthesis","termid":"FYPO:0007904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal glucan synthesis during vegetative growth","synonyms":[{"name":"abnormal glucan synthesis during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000043"}


id: MONDO:1012615
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of glomerulonephritis that occurs in sheep and is characterized by thickening of glomerular capillary basement membranes, proliferation of mesangial cells, and peri-glomerular fibrosis and associated with C3 deficiency.","definition_xrefs":["PMID:21252520","PMID:6372972"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerulonephritis, non-human animal","termid":"MONDO:1010258"},{"relation_name":"is_a","term_name":"complement component 3 deficiency, non-human animal","termid":"MONDO:1011421"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mesangiocapillary glomerulonephritis, type I, sheep","secondary_identifiers":["OMIA:000642-9940"],"termid":"MONDO:1012615","xrefs":{"Monarch":{"xref_id":"1012615"}}}


id: GO:0046980
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to tapasin, a member of the MHC class I loading complex which bridges the TAP peptide transporter to class I molecules.","definition_xrefs":["PMID:12594855"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"tapasin binding","synonyms":[{"name":"TAP binding protein binding","type":"exact"},{"name":"TAPBP binding","type":"related"}],"termid":"GO:0046980"}


id: PBO:0047763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fos proto-oncogene, AP-1 transcription factor subunit","termid":"PBO:0047763"}


id: MONDO:0859615
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A diffuse astrocytoma that is a diffusely infiltrative astroglial neoplasm composed of monomorphic cells with genetic alterations in MYB or MYBL1.","definition_xrefs":["DOID:0081279"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diffuse astrocytoma","termid":"MONDO:0016686"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diffuse astrocytoma, MYB- or MYBL1-altered","termid":"MONDO:0859615","xrefs":{"Monarch":{"xref_id":"0859615"}}}


id: GO:0030352
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: inositol-1,4,5,6-tetrakisphosphate + H2O = inositol-1,4,5-trisphosphate + phosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol tetrakisphosphate phosphatase activity","termid":"GO:0052743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016788","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"inositol-1,4,5,6-tetrakisphosphate 6-phosphatase activity","termid":"GO:0030352"}


id: PBO:0054572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1974","termid":"PBO:0054572"}


id: GO:0048934
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the peripheral nervous system.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron differentiation","termid":"GO:0030182"},{"relation_name":"part_of","term_name":"peripheral nervous system development","termid":"GO:0007422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peripheral nervous system neuron differentiation","termid":"GO:0048934"}


id: FYPO:0008331
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a specific substance measured in the plasma membrane is higher than normal.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"altered level of substance in plasma membrane","termid":"FYPO:0008331"}


id: GO:1900973
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of sarcinapterin biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"positive regulation of sarcinapterin metabolic process","termid":"GO:1900970"},{"relation_name":"is_a","term_name":"regulation of sarcinapterin biosynthetic process","termid":"GO:1900971"},{"relation_name":"positively_regulates","term_name":"sarcinapterin biosynthetic process","termid":"GO:1900868"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0042559"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0042559"}],"interesting_parent_ids":["GO:0044281","GO:0042559","GO:0008150"],"is_obsolete":false,"name":"positive regulation of sarcinapterin biosynthetic process","synonyms":[{"name":"activation of sarcinapterin anabolism","type":"exact"},{"name":"activation of sarcinapterin biosynthesis","type":"exact"},{"name":"activation of sarcinapterin biosynthetic process","type":"narrow"},{"name":"activation of sarcinapterin formation","type":"exact"},{"name":"activation of sarcinapterin synthesis","type":"exact"},{"name":"positive regulation of sarcinapterin anabolism","type":"exact"},{"name":"positive regulation of sarcinapterin biosynthesis","type":"exact"},{"name":"positive regulation of sarcinapterin formation","type":"exact"},{"name":"positive regulation of sarcinapterin synthesis","type":"exact"},{"name":"up regulation of sarcinapterin anabolism","type":"exact"},{"name":"up regulation of sarcinapterin biosynthesis","type":"exact"},{"name":"up regulation of sarcinapterin biosynthetic process","type":"exact"},{"name":"up regulation of sarcinapterin formation","type":"exact"},{"name":"up regulation of sarcinapterin synthesis","type":"exact"},{"name":"up-regulation of sarcinapterin anabolism","type":"exact"},{"name":"up-regulation of sarcinapterin biosynthesis","type":"exact"},{"name":"up-regulation of sarcinapterin biosynthetic process","type":"exact"},{"name":"up-regulation of sarcinapterin formation","type":"exact"},{"name":"up-regulation of sarcinapterin synthesis","type":"exact"},{"name":"upregulation of sarcinapterin anabolism","type":"exact"},{"name":"upregulation of sarcinapterin biosynthesis","type":"exact"},{"name":"upregulation of sarcinapterin biosynthetic process","type":"exact"},{"name":"upregulation of sarcinapterin formation","type":"exact"},{"name":"upregulation of sarcinapterin synthesis","type":"exact"}],"termid":"GO:1900973"}


id: GO:2001261
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of semaphorin-plexin signaling pathway.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of semaphorin-plexin signaling pathway","termid":"GO:2001260"},{"relation_name":"negatively_regulates","term_name":"semaphorin-plexin signaling pathway","termid":"GO:0071526"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of semaphorin-plexin signaling pathway","synonyms":[{"name":"negative regulation of semaphorin-plexin signalling pathway","type":"exact"}],"termid":"GO:2001261"}


id: PBO:0072717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"relaxin family peptide/INSL5 receptor 4","termid":"PBO:0072717"}


id: GO:0016765
data:
  {"annotated_genes":["SJAG_00381","SJAG_00337","SJAG_03173","SJAG_04481","SJAG_04923","SJAG_02972","SJAG_00224","SJAG_03352","SJAG_00179","SJAG_02719","SJAG_02360","SJAG_00815","SJAG_03755","SJAG_04568","SJAG_02163","SJAG_03102","SJAG_04735","SJAG_03659","SJAG_03863","SJAG_03029","SJAG_03580","SJAG_02583","SJAG_00580","SJAG_06603","SJAG_00238","SJAG_02896","SJAG_02491","SJAG_04130","SJAG_03810","SJAG_01575","SJAG_04434","SJAG_05181","SJAG_04085","SJAG_01058","SJAG_00582","SJAG_00554","SJAG_01865"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[58331,69262],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004337"},{"annotations":[67981,69743],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090560"},{"annotations":[78700,80005],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003849"},{"annotations":[74087],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003866"},{"annotations":[79160],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008412"},{"annotations":[80496],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000906"},{"annotations":[121638,121639],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097269"},{"annotations":[75711,73029],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004662"},{"annotations":[77063],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003962"},{"annotations":[112503,111451],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004124"},{"annotations":[111452],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0141223"},{"annotations":[72595],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034038"},{"annotations":[81581],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004156"},{"annotations":[73822,76201],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045547"},{"annotations":[111476,101528],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004311"},{"annotations":[115884,78869,80408,76456],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004364"},{"annotations":[78139],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004418"},{"annotations":[76774],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004478"},{"annotations":[112504],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051009"},{"annotations":[73028,75296],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004660"},{"annotations":[80178],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008495"},{"annotations":[75596,80746,103352],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004663"},{"annotations":[112375,78208],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004746"},{"annotations":[57300],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106388"},{"annotations":[76764],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004766"},{"annotations":[104706],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016768"},{"annotations":[78273],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051996"},{"annotations":[78792],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004789"},{"annotations":[99994],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0102522"},{"annotations":[72748],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052381"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).","definition_xrefs":["EC:2.5.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase 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activity, transferring alkyl or aryl (other than methyl) groups","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:29191091":null},"secondary_identifiers":["Reactome:R-HSA-4419978","Reactome:R-HSA-6782893","Reactome:R-HSA-3095889","GO:0016766","Reactome:R-HSA-4755545"],"synonyms":[{"name":"transferase activity, transferring alkyl or aryl groups, other than methyl groups","type":"exact"}],"termid":"GO:0016765","terms_by_termid":{"GO:0000906":null,"GO:0003849":null,"GO:0003866":null,"GO:0003962":null,"GO:0004124":null,"GO:0004156":null,"GO:0004311":null,"GO:0004337":null,"GO:0004364":null,"GO:0004418":null,"GO:0004478":null,"GO:0004660":null,"GO:0004662":null,"GO:0004663":null,"GO:0004746":null,"GO:0004766":null,"GO:0004789":null,"GO:0006743":null,"GO:0006744":null,"GO:0008412":null,"GO:0008495":null,"GO:0016768":null,"GO:0034038":null,"GO:0045547":null,"GO:0051009":null,"GO:0051996":null,"GO:0052381":null,"GO:0090560":null,"GO:0097269":null,"GO:0102522":null,"GO:0106388":null,"GO:0141223":null}}


id: PATO:0001700
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A sleep pattern which has irregular start and/or end times.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sleep pattern","termid":"PATO:0000062"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"irregular sleep pattern","termid":"PATO:0001700"}


id: SO:0001969
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcript variant occurring within an intron of a coding transcript.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intron_variant","termid":"SO:0001627"},{"relation_name":"is_a","term_name":"coding_transcript_variant","termid":"SO:0001968"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coding_transcript_intron_variant","synonyms":[{"name":"Jannovar:coding_transcript_intron_variant","type":"exact"},{"name":"coding sequence intron variant","type":"exact"}],"termid":"SO:0001969"}


id: FYPO:0006594
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which localization of the gamma-tubulin complex to the spindle pole body is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal gamma-tubulin complex localization to mitotic spindle pole body","synonyms":[{"name":"normal gamma-tubulin complex localisation to mitotic spindle pole body","type":"exact"},{"name":"normal gamma-tubulin complex localization to mitotic SPB","type":"exact"},{"name":"normal gamma-tubulin complex localization to mitotic spindle pole body during vegetative growth","type":"exact"},{"name":"normal gamma-tubulin complex localization to spindle pole body during mitotic cell cycle","type":"related"}],"termid":"FYPO:0006594"}


id: MONDO:0001589
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete vaginal enterocele (obsolete MONDO:0001589)","secondary_identifiers":["DOID:1283","MESH:D006547","ICD9:618.6","SCTID:398061002"],"synonyms":[{"name":"enterocele","type":"broad"},{"name":"vaginal hernia","type":"related"}],"termid":"MONDO:0001589","xrefs":{"Monarch":{"xref_id":"0001589"}}}


id: GO:0009452
data:
  {"annotated_genes":["SJAG_01713","SJAG_01724","SJAG_04488","SJAG_04034"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70225,77264,109667,74109],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006370"},{"annotations":[60386],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0106005"}]},"cv_name":"biological_process","definition":"The sequence of enzymatic reactions by which the RNA 5' cap structure, an inverted 7-methylguanosine linked via a 5'-5' triphosphate bridge (m7G(5')ppp(5')X) to the first transcribed residue, is added to a nascent transcript. Additional methylation can occur on the ribose sugars of the first and second nucleotides adjacent to the m7G nRNA cap. These methylations are often referred to as N6,2'-O-dimethyladenosine (m6,2A) and N6,2'-O-dimethylguanosine (m6,2G), respectively.","definition_xrefs":["PMID:9266685","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA capping","termid":"GO:0036260"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01713":null,"SJAG_01724":null,"SJAG_04034":null,"SJAG_04488":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"7-methylguanosine RNA capping","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"RNA capping","type":"broad"},{"name":"m(7)G RNA capping","type":"exact"}],"termid":"GO:0009452","terms_by_termid":{"GO:0006370":null,"GO:0106005":null}}


id: MONDO:0009383
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary hyperbilirubinemia","termid":"MONDO:0002408"},{"relation_name":"is_a","term_name":"liver disorder","termid":"MONDO:0005154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0005066","MONDO:0002515"],"is_obsolete":false,"name":"transient familial neonatal hyperbilirubinemia","secondary_identifiers":["Orphanet:2312","GARD:2791","UMLS:C0270210","MESH:C562692","MEDGEN:75718","OMIM:237900"],"synonyms":[{"name":"HBLRTFN","type":"related"},{"name":"Lucey-Driscoll syndrome","type":"exact"},{"name":"breast milk jaundice","type":"related"},{"name":"hyperbilirubinemia transient familial neonatal","type":"related"},{"name":"hyperbilirubinemia, familial transient neonatal","type":"exact"},{"name":"hyperbilirubinemia, transient familial neonatal","type":"related"},{"name":"transient familial hyperbilirubinemia","type":"related"}],"termid":"MONDO:0009383","xrefs":{"Monarch":{"xref_id":"0009383"}}}


id: PBO:0061903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"opioid receptor mu 1","termid":"PBO:0061903"}


id: GO:0099032
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic early endosome membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete anchored component of postsynaptic early endosome membrane (obsolete GO:0099032)","termid":"GO:0099032"}


