# terms

id: PR:O13846
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A fatty acid 2-hydroxylase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12863:SF0","OMA:SCHPO01681","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ceramide very long chain fatty acid hydroxylase-like protein C19G12.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19G12.08","secondary_identifiers":["UniProtKB:O13846"],"synonyms":[{"name":"Spom972h-FA2H","type":"exact"}],"termid":"PR:O13846"}


id: PATO:0001651
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A resistance to a stimulus which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"resistant to","termid":"PATO:0001178"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased resistance to","synonyms":[{"name":"decreased resistance","type":"exact"},{"name":"low resistance to","type":"exact"}],"termid":"PATO:0001651"}


id: PBO:0117178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTIF antisense RNA 1","termid":"PBO:0117178"}


id: GO:0032056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of translation as a result of a stimulus indicating the organism is under stress.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translation in response to stress","termid":"GO:0043555"},{"relation_name":"is_a","term_name":"positive regulation of translation","termid":"GO:0045727"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of translation in response to stress","synonyms":[{"name":"activation of translation in response to stress","type":"narrow"},{"name":"stimulation of translation in response to stress","type":"narrow"},{"name":"up regulation of translation in response to stress","type":"exact"},{"name":"up-regulation of translation in response to stress","type":"exact"},{"name":"upregulation of translation in response to stress","type":"exact"}],"termid":"GO:0032056"}


id: PBO:0051843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IRS4 antisense RNA 1","termid":"PBO:0051843"}


id: PBO:0065477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, non-ATPase 14","termid":"PBO:0065477"}


id: SO:0002194
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The pseudogene has arisen from a copy of the parent gene by duplication followed by accumulation of random mutation. The changes, compared to their functional homolog, include insertions, deletions, premature stop codons, frameshifts and a higher proportion of non-synonymous versus synonymous substitutions.","direct_ancestors":[{"relation_name":"is_a","term_name":"pseudogenic_rRNA","termid":"SO:0000777"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unprocessed_pseudogenic_rRNA","synonyms":[{"name":"INSDC_feature:rRNA","type":"broad"},{"name":"INSDC_qualifier:unprocessed","type":"exact"},{"name":"unprocessed pseudogenic rRNA","type":"exact"}],"termid":"SO:0002194"}


id: MONDO:0013326
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Senior-Loken syndrome in which the cause of the disease is a mutation in the SDCCAG8 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Senior-Loken syndrome","termid":"MONDO:0017842"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005240","MONDO:0006025"],"is_obsolete":false,"name":"Senior-Loken syndrome 7","secondary_identifiers":["UMLS:C3150877","GARD:15681","MEDGEN:462227","OMIM:613615"],"synonyms":[{"name":"SDCCAG8 Senior-Loken syndrome","type":"exact"},{"name":"SENIOR-Loken syndrome 7","type":"related"},{"name":"SLSN7","type":"related"},{"name":"Senior-Loken syndrome 7","type":"exact"},{"name":"Senior-Loken syndrome caused by mutation in SDCCAG8","type":"exact"},{"name":"Senior-Loken syndrome type 7","type":"exact"}],"termid":"MONDO:0013326","xrefs":{"Monarch":{"xref_id":"0013326"}}}


id: FYPO:0004284
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of oxanine DNA N-glycosylase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal oxanine DNA N-glycosylase activity","termid":"FYPO:0004283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0001985","FYPO:0000707","FYPO:0000661","FYPO:0000652"],"is_obsolete":false,"name":"decreased oxanine DNA N-glycosylase activity","synonyms":[{"name":"reduced oxanine DNA N-glycosylase activity","type":"exact"}],"termid":"FYPO:0004284"}


id: GO:0019387
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including methanol.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methanol metabolic process","termid":"GO:0015945"},{"relation_name":"is_a","term_name":"methanogenesis","termid":"GO:0015948"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006091","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"methanogenesis, from methanol","secondary_identifiers":["MetaCyc:METHFORM-PWY"],"synonyms":[{"name":"methane biosynthesis from methanol","type":"exact"},{"name":"methane biosynthetic process from methanol","type":"exact"}],"termid":"GO:0019387"}


id: GO:0001181
data:
  {"annotated_genes":["SJAG_00692","SJAG_02813","SJAG_05331","SJAG_02747","SJAG_01712","SJAG_04766","SJAG_01744","SJAG_04083","SJAG_00202","SJAG_00421"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[65017,69831,73293,73854,95068,97493,107242,109662,111141,111731],"is_not":false,"summary":null,"term":"GO:0001181"}]},"cv_name":"molecular_function","definition":"A general transcription initiation factor activity that contributes to transcription start site selection and transcription initiation of genes transcribed by RNA polymerase I. Factors required for RNA polymerase I transcription initiation include upstream activation factor (UAF), core factor (CF), TATA binding protein (TBP) and RRN3. In all species characterized, RNA polymerase I transcribes a large polycistronic transcript that is processed into several mature rRNAs (3 or 4 depending on the species), including the large subunit rRNA (28S in humans), the small subunit rRNA (18S in humans), as well as one or two additional smaller rRNAs (the 5.8S rRNA in humans). In most species, this large rRNA transcript is the sole product of RNA polymerase I. However there are rare exceptions, such as Trypanosoma brucei, where RNA polymerase I also transcribes certain mRNAs.","definition_xrefs":["PMID:25346433","PMID:28340337","PMID:31358304","PMID:28842442","GOC:txnOH-2018","PMID:11500378","PMID:17972917"],"direct_ancestors":[{"relation_name":"is_a","term_name":"general transcription initiation factor activity","termid":"GO:0140223"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00202":null,"SJAG_00421":null,"SJAG_00692":null,"SJAG_01712":null,"SJAG_01744":null,"SJAG_02747":null,"SJAG_02813":null,"SJAG_04083":null,"SJAG_04766":null,"SJAG_05331":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140223"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0140223"],"is_obsolete":false,"name":"RNA polymerase I general transcription initiation factor activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"RNA polymerase I transcription general initiation factor activity","type":"exact"},{"name":"core RNA polymerase I binding transcription factor activity","type":"broad"},{"name":"general RNA polymerase I transcription factor activity","type":"exact"},{"name":"transcription factor activity, core RNA polymerase I binding","type":"broad"}],"termid":"GO:0001181","terms_by_termid":{"GO:0001181":null}}


id: MONDO:0009272
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"German syndrome is an autosomal recessive arthrogryposis syndrome, described in 5 cases. Three of the four known families with affected children were Ashkenazi Jews. German syndrome is characterized by arthrogryposis, hypotonia-hypokinesia sequence, and lymphedema. Patients present distinct craniofacial appearance (tall forehead and ''carp''-shaped mouth, cleft palate), contractures, severe hypotonia manifesting as motor delay, and swallowing difficulties. The disease has a severe morbidity and mortality rate and survivors present a small stature, hypotonia, frequent upper respiratory infections, and psychomotor delay. There have been no further descriptions in the literature since 1987.","definition_xrefs":["Orphanet:2077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"fetal trimethadione syndrome","termid":"MONDO:0016009"},{"relation_name":"is_a","term_name":"primary lymphedema","termid":"MONDO:0019175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"German syndrome","secondary_identifiers":["MEDGEN:854357","MESH:C562543","OMIM:231080","UMLS:C3887495","GARD:2462","SCTID:733037000"],"synonyms":[{"name":"German syndrome","type":"exact"}],"termid":"MONDO:0009272","xrefs":{"Monarch":{"xref_id":"0009272"}}}


id: MONDO:0015864
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant germ cell tumor characterized by the presence of at least two different germ cell components. The different germ cell components include choriocarcinoma, embryonal carcinoma, yolk sac tumor, teratoma, and seminoma. It occurs in the ovary, testis, and extragonadal sites including central nervous system and mediastinum.","definition_xrefs":["NCIT:C4290"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"extragonadal non-dysgerminomatous germ cell tumor","termid":"MONDO:0020539"},{"relation_name":"is_a","term_name":"malignant germ cell tumor","termid":"MONDO:0006290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"mixed germ cell tumor","secondary_identifiers":["ICDO:9085/3","MEDGEN:87257","NANDO:2200071","Orphanet:180234","UMLS:C0334524","GARD:20202","DOID:3306"],"synonyms":[{"name":"combined germ cell neoplasm","type":"exact"},{"name":"combined germ cell tumor","type":"exact"},{"name":"combined germ cell tumour","type":"exact"},{"name":"mixed germ cell cancer","type":"exact"},{"name":"mixed germ cell neoplasm","type":"exact"},{"name":"mixed germ cell tumor","type":"exact"}],"termid":"MONDO:0015864","xrefs":{"Monarch":{"xref_id":"0015864"}}}


id: GO:0050437
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: geranyl diphosphate + H2O = (-)-endo-fenchol + diphosphate.","definition_xrefs":["RHEA:20565","EC:4.2.3.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"(-)-endo-fenchol synthase activity","secondary_identifiers":["KEGG_REACTION:R02004","MetaCyc:4.2.3.10-RXN"],"synonyms":[{"name":"(-)-endo-fenchol cyclase activity","type":"related"},{"name":"geranyl pyrophosphate:(-)-endo-fenchol cyclase activity","type":"related"},{"name":"geranyl-diphosphate diphosphate-lyase [cyclizing, (-)-endo-fenchol-forming]","type":"related"}],"termid":"GO:0050437"}


id: GO:0022842
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transport of a solute across a membrane via a narrow pore channel that may be gated or ungated.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"channel activity","termid":"GO:0015267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"narrow pore channel activity","termid":"GO:0022842"}


id: SOFP:description
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","definition":"Free-text description of feature","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"description","termid":"SOFP:description"}


id: PBO:0072654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retrotransposon Gag like 8A","termid":"PBO:0072654"}


id: PBO:0070614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 82","termid":"PBO:0070614"}


id: PBO:0065218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoribosyl pyrophosphate synthetase associated protein 1","termid":"PBO:0065218"}


id: PBO:0057585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 890","termid":"PBO:0057585"}


id: PBO:0074513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small NF90 (ILF3) associated RNA A5","termid":"PBO:0074513"}


id: GO:0003829
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-galactosyl-(1->3)-N-acetyl-D-galactosaminyl-R = UDP + beta-D-galactosyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-D-galactosaminyl-R. This reaction is the addition of N-acetyl-alpha-D-glucosamine to the core 1 structure of O-glycans forming core 2.","definition_xrefs":["EC:2.4.1.102"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a glycoprotein","termid":"GO:0140103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0003824","GO:0016740","GO:0003674","GO:0140096"],"is_obsolete":false,"name":"beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity","secondary_identifiers":["Reactome:R-HSA-914018","Reactome:R-HSA-914012","RHEA:18705","MetaCyc:2.4.1.102-RXN"],"synonyms":[{"name":"O-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:O-glycosyl-glycoprotein (N-acetyl-D-glucosamine to N-acetyl-D-galactosamine of beta-D-galactosyl-1,3-N-acetyl-D-galactosaminyl-R) beta-1,6-N-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"beta(6)-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"beta6-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"core 2 acetylglucosaminyltransferase activity","type":"related"},{"name":"core 6-beta-GlcNAc-transferase A","type":"related"},{"name":"uridine diphosphoacetylglucosamine-mucin beta-(1,6)-acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-mucin beta-(1->6)-acetylglucosaminyltransferase activity","type":"related"}],"termid":"GO:0003829"}


id: GO:0072101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that results in the establishment of the ureteric bud such that there is a similar arrangement in form and relationship of parts along its anterior/posterior axis.","definition_xrefs":["GOC:mtg_kidney_jan10"],"gene_count":0,"genotype_count":0,"name":"obsolete specification of ureteric bud anterior/posterior symmetry by BMP signaling pathway (obsolete GO:0072101)","synonyms":[{"name":"specification of ureteric bud anterior/posterior asymmetry by BMP signaling pathway","type":"exact"},{"name":"specification of ureteric bud anterior/posterior symmetry by BMP signalling pathway","type":"exact"}],"termid":"GO:0072101"}


id: PR:Q09793
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nucleoporin p58/p45 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin nup45 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22G7.09c","secondary_identifiers":["UniProtKB:Q09793"],"synonyms":[{"name":"Spom972h-NUPL1","type":"exact"},{"name":"nuclear pore protein nup45 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09793"}


id: GO:0052122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of environmental oxygen on, within or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative aerotaxis in host environment (obsolete GO:0052122)","synonyms":[{"name":"negative aerotaxis in response to host environment","type":"exact"}],"termid":"GO:0052122"}


id: GO:0052173
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the defenses of another organism.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete response to defenses of other organism (obsolete GO:0052173)","synonyms":[{"name":"response to defenses of other organism during symbiotic interaction","type":"related"},{"name":"response to defenses of other organism involved in symbiotic interaction","type":"related"}],"termid":"GO:0052173"}


id: PBO:0050956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon gamma receptor 2","termid":"PBO:0050956"}


id: PR:O74330
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 40S ribosomal protein S27-like protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02489","PANTHER:PTHR11594:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S27 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1685.10","secondary_identifiers":["UniProtKB:O74330"],"synonyms":[{"name":"Spom972h-RPS27L","type":"exact"}],"termid":"PR:O74330"}


id: PBO:0080527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WAS protein family homolog 9, pseudogene","termid":"PBO:0080527"}


id: PR:Q9P3W6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC458.02c gene.","definition_xrefs":["UniProtKB:Q9P3W6","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C458.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC458.02c","synonyms":[{"name":"Spom972h-SPAC458.02c","type":"exact"}],"termid":"PR:Q9P3W6"}


id: GO:0008475
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysyl-[collagen] + 2-oxoglutarate + O2 = (5R)-5-hydroxy-L-lysyl-[collagen] + succinate + CO2.","definition_xrefs":["RHEA:16569"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824","GO:0140096"],"is_obsolete":false,"name":"procollagen-lysine 5-dioxygenase activity","secondary_identifiers":["MetaCyc:PROCOLLAGEN-LYSINE-5-DIOXYGENASE-RXN","EC:1.14.11.4","Reactome:R-HSA-1981104"],"synonyms":[{"name":"collagen lysine hydroxylase activity","type":"related"},{"name":"lysine hydroxylase activity","type":"broad"},{"name":"lysine,2-oxoglutarate 5-dioxygenase activity","type":"broad"},{"name":"lysine-2-oxoglutarate dioxygenase activity","type":"broad"},{"name":"lysyl hydroxylase activity","type":"broad"},{"name":"lysylprotocollagen dioxygenase activity","type":"related"},{"name":"procollagen-L-lysine,2-oxoglutarate:oxygen oxidoreductase (5-hydroxylating)","type":"related"},{"name":"procollagen-lysine,2-oxoglutarate 5-dioxygenase activity","type":"related"},{"name":"protocollagen lysine dioxygenase activity","type":"related"},{"name":"protocollagen lysine hydroxylase activity","type":"related"},{"name":"protocollagen lysyl hydroxylase activity","type":"related"}],"termid":"GO:0008475"}


id: GO:0047579
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-4-hydroxymandelate + H+ + O2 = 4-hydroxybenzaldehyde + CO2 + H2O2.","definition_xrefs":["RHEA:15833","EC:1.1.3.19"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor","termid":"GO:0016899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"4-hydroxymandelate oxidase activity","secondary_identifiers":["MetaCyc:4-HYDROXYMANDELATE-OXIDASE-RXN","KEGG_REACTION:R02673"],"synonyms":[{"name":"(S)-2-hydroxy-2-(4-hydroxyphenyl)acetate:oxygen 1-oxidoreductase activity","type":"related"},{"name":"L-4-hydroxymandelate oxidase (decarboxylating)","type":"related"}],"termid":"GO:0047579"}


id: GO:0018029
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The palmitoylation of peptidyl-lysine to form peptidyl-N6-palmitoyl-L-lysine.","definition_xrefs":["RESID:AA0077"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-lysine palmitoylation (obsolete GO:0018029)","termid":"GO:0018029"}


id: PBO:0067916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 218","termid":"PBO:0067916"}


id: PBO:0060091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 38","termid":"PBO:0060091"}


id: MONDO:0024327
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Impairment of the renal function due to chronic kidney damage.","definition_xrefs":["NCIT:C9438"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney failure","termid":"MONDO:0001106"},{"relation_name":"is_a","term_name":"chronic kidney disease","termid":"MONDO:0005300"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"chronic renal failure syndrome","secondary_identifiers":["MEDGEN:9637","MESH:D051436","NANDO:2100023","ICD9:585.9","SCTID:90688005","UMLS:C0022661"],"synonyms":[{"name":"CRF - chronic renal failure","type":"exact"},{"name":"Chronic renal disease","type":"exact"},{"name":"chronic kidney failure","type":"exact"},{"name":"chronic renal failure","type":"exact"},{"name":"chronic renal failure disease","type":"exact"},{"name":"kidney failure, chronic","type":"exact"}],"termid":"MONDO:0024327","xrefs":{"Monarch":{"xref_id":"0024327"}}}


id: GO:1904489
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A negative regulation of transcription from RNA polymerase II promoter that results in regulation of reactive oxygen species metabolic process.","definition_xrefs":["PMID:25961505","GO_REF:0000063","GOC:TermGenie","GOC:kmv"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of reactive oxygen species metabolic process by negative regulation of transcription from RNA polymerase II promoter (obsolete GO:1904489)","synonyms":[{"name":"regulation of ROS metabolic process by down regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of ROS metabolic process by down regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of ROS metabolic process by down-regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of ROS metabolic process by down-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of ROS metabolic process by downregulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of ROS metabolic process by downregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of ROS metabolic process by inhibition of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of ROS metabolic process by inhibition of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of ROS metabolic process by negative regulation of gene-specific transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of ROS metabolic process by negative regulation of global transcription from Pol II promoter","type":"related"},{"name":"regulation of ROS metabolic process by negative regulation of transcription from Pol II promoter","type":"exact"},{"name":"regulation of ROS metabolic process by negative regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of ROS metabolic process by negative regulation of transcription from RNA polymerase II promoter, global","type":"related"},{"name":"regulation of reactive oxygen species metabolic process by down regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolic process by down regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolic process by down-regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolic process by down-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolic process by downregulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolic process by downregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolic process by inhibition of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolic process by inhibition of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolic process by negative regulation of gene-specific transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolic process by negative regulation of global transcription from Pol II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolic process by negative regulation of transcription from Pol II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolic process by negative regulation of transcription from RNA polymerase II promoter, global","type":"related"},{"name":"regulation of reactive oxygen species metabolism by down regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolism by down regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolism by down-regulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolism by down-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolism by downregulation of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolism by downregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolism by inhibition of global transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolism by inhibition of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolism by negative regulation of gene-specific transcription from RNA polymerase II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolism by negative regulation of global transcription from Pol II promoter","type":"related"},{"name":"regulation of reactive oxygen species metabolism by negative regulation of transcription from Pol II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolism by negative regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of reactive oxygen species metabolism by negative regulation of transcription from RNA polymerase II promoter, global","type":"related"}],"termid":"GO:1904489"}


id: PBO:0088573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex cyclin subunit Srb11","termid":"PBO:0088573"}


id: PBO:0051931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inter-alpha-trypsin inhibitor heavy chain 3","termid":"PBO:0051931"}


id: PBO:0086556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YHL005C is not an essential gene","termid":"PBO:0086556"}


id: GO:0098786
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that results in the disassembly of a biofilm matrix.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix disassembly","termid":"GO:0022617"},{"relation_name":"is_a","term_name":"biofilm matrix organization","termid":"GO:0098784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"biofilm matrix disassembly","termid":"GO:0098786"}


id: PBO:0002297
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.3.1.37","termid":"PBO:0002297"}


id: PR:O94707
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rxt3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94707"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional regulatory protein rxt3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1259.07","synonyms":[{"name":"Spom972h-rxt3","type":"exact"}],"termid":"PR:O94707"}


id: PBO:0018211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cholinephosphate cytidylyltransferase Pcy1 (predicted)","termid":"PBO:0018211"}


id: PBO:0003300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coatomer alpha subunit (predicted)","termid":"PBO:0003300"}


id: PATO:0002223
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's having reacted with oxygen, or been modified by oxidation (the reaction in which the atoms of an element lose electrons and the valence of the element increases).","definition_xrefs":["Wikipedia:http://en.wiktionary.org/wiki/oxidized"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular quality","termid":"PATO:0002182"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidized","termid":"PATO:0002223"}


id: PBO:0002438
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence updated","termid":"PBO:0002438"}


id: MONDO:0017975
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital conditions of atypical sexual development associated with abnormal sex chromosome constitutions including monosomy; trisomy; and mosaicism.","definition_xrefs":["MESH:D058533"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of sexual differentiation","termid":"MONDO:0002145"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sex chromosome disorder of sex development","secondary_identifiers":["UMLS:C2936421","Orphanet:325546","MEDGEN:423530"],"synonyms":[{"name":"Sex chromosome DSD","type":"exact"}],"termid":"MONDO:0017975","xrefs":{"Monarch":{"xref_id":"0017975"}}}


id: MONDO:0016809
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, mitochondrial DNA maintenance syndrome characterized by cerebellar ataxia, sensory peripheral neuropathy, myoclonus, epilepsy, progressive cognitive impairment, late-onset ptosis and external ophthalmoplegia. Liver failure may also occur, most often in association with the use of antiepileptic drug sodium valproate.","definition_xrefs":["Orphanet:254881"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory ataxic neuropathy, dysarthria, and ophthalmoparesis","termid":"MONDO:0011835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005066","MONDO:0005244","MONDO:0005336","MONDO:0004069"],"is_obsolete":false,"name":"spinocerebellar ataxia with epilepsy","secondary_identifiers":["icd11.foundation:1238648682","MEDGEN:334510","MESH:C564395","GARD:17229","UMLS:C1843852"],"synonyms":[{"name":"MSCAE","type":"exact"},{"name":"SCAE","type":"exact"},{"name":"mitochondrial spinocerebellar ataxia with epilepsy","type":"exact"}],"termid":"MONDO:0016809","xrefs":{"Monarch":{"xref_id":"0016809"}}}


id: SO:0001275
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A modified cytidine is a cytidine base feature which has been altered.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_RNA_base_feature","termid":"SO:0000250"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified_cytidine","synonyms":[{"name":"modified cytidine","type":"exact"}],"termid":"SO:0001275"}


id: PBO:0081496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 394","termid":"PBO:0081496"}


id: PBO:0056938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7-3","termid":"PBO:0056938"}


id: PBO:0066459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"REXO1 like 12, pseudogene","termid":"PBO:0066459"}


id: GO:0009060
data:
  {"annotated_genes":["SJAG_04048","SJAG_01763","SJAG_01190","SJAG_00080","SJAG_05204","SJAG_04843","SJAG_00755","SJAG_06622","SJAG_02598","SJAG_05629","SJAG_07006","SJAG_02009","SJAG_03828","SJAG_03373","SJAG_03660","SJAG_00605","SJAG_MIT04","SJAG_01355","SJAG_02135","SJAG_00601","SJAG_01490","SJAG_00461","SJAG_01402","SJAG_04495","SJAG_02107","SJAG_00133","SJAG_00027","SJAG_02564","SJAG_02592","SJAG_06382","SJAG_01922","SJAG_04152","SJAG_00985","SJAG_03114","SJAG_04192","SJAG_04122","SJAG_00866","SJAG_MIT15","SJAG_MIT20","SJAG_03588","SJAG_02796","SJAG_03925","SJAG_03290","SJAG_01524","SJAG_MIT09","SJAG_07007","SJAG_02744","SJAG_MIT03","SJAG_02158","SJAG_02504","SJAG_02646","SJAG_00915","SJAG_03064","SJAG_07003","SJAG_00542","SJAG_02369","SJAG_03920","SJAG_01077","SJAG_02398","SJAG_01671","SJAG_00698","SJAG_02464","SJAG_00836","SJAG_04334","SJAG_00438","SJAG_01895","SJAG_03813","SJAG_06621","SJAG_00839","SJAG_01310","SJAG_01630","SJAG_02006","SJAG_MIT37","SJAG_00976","SJAG_02433","SJAG_MIT13","SJAG_03903","SJAG_03163","SJAG_01062","SJAG_02945","SJAG_03490","SJAG_02105","SJAG_01753","SJAG_00260"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[61665,63445,89285,96915,100955,110574],"is_not":false,"summary":null,"term":"GO:0009060"},{"annotations":[96431,107791,111386,79623,111387,74198,111384,118372,99918,105331,111383,111385,107421,105589,111382,100189,107419,111381,107420,107790],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0061621"},{"annotations":[90478],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0061613"},{"annotations":[80671,73602,110266,117480,78225,116246,76018,121080,121131,121102,62493],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0006123"},{"annotations":[114866],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0006120"},{"annotations":[90689,118780,115205,91063],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0006121"},{"annotations":[121107,75528,73941,62459,77460,115412,77542,106026,78224,119714],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0006122"},{"annotations":[104984,121112,91007,95173,121124,95764,105627,94746,121118,117867,110775,103763,106977,96754,109785,109877,105601],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0042776"},{"annotations":[111682,113883,96273,99550],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1903715"},{"annotations":[75871,81080,72500,67755,77607,76178,62137,71986,74918,77106,78591,65444,108709,63469,73521],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006099"}]},"cv_name":"biological_process","definition":"The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.","definition_xrefs":["ISBN:0140513590","GOC:jl","GOC:das"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular 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respiration","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["MetaCyc:PWY-3781","Wikipedia:Cellular_respiration#Aerobic_respiration"],"termid":"GO:0009060","terms_by_termid":{"GO:0006099":null,"GO:0006120":null,"GO:0006121":null,"GO:0006122":null,"GO:0006123":null,"GO:0009060":null,"GO:0042776":null,"GO:0061613":null,"GO:0061621":null,"GO:1903715":null}}


id: MONDO:0012123
data:
  {"annotated_genes":["SJAG_02903"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88268],"is_not":false,"summary":null,"term":"MONDO:0012123"}]},"cv_name":"mondo","definition":"The CDG (Congenital Disorders of Glycosylation) syndromes are a group of autosomal recessive disorders affecting glycoprotein synthesis. CDG syndrome type Ie is characterized by psychomotor delay, seizures, hypotonia, facial dysmorphism and microcephaly. Ocular anomalies are also very common.","definition_xrefs":["Orphanet:79322"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type I","termid":"MONDO:0005500"},{"relation_name":"is_a","term_name":"disorder of multiple glycosylation","termid":"MONDO:0017749"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02903":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"congenital disorder of glycosylation type 1E","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:608799","DOID:0080557","GARD:9831","MEDGEN:324784","MESH:C535743","SCTID:725078006","UMLS:C1837396","NCIT:C126871"],"synonyms":[{"name":"CDG 1E","type":"related"},{"name":"CDG Ie","type":"related"},{"name":"CDG syndrome type Ie","type":"exact"},{"name":"CDG-Ie","type":"exact"},{"name":"CDG1E","type":"exact"},{"name":"CDGIe","type":"exact"},{"name":"DPM1 congenital disorder of glycosylation","type":"exact"},{"name":"DPM1-CDG","type":"related"},{"name":"DPM1-CDG (CDG-Ie)","type":"related"},{"name":"Dol-P-mannosyltransferase deficiency","type":"exact"},{"name":"carbohydrate deficient glycoprotein syndrome type Ie","type":"exact"},{"name":"carbohydrate-deficient glycoprotein syndrome type 1E","type":"related"},{"name":"congenital disorder of glycosylation caused by mutation in DPM1","type":"exact"},{"name":"congenital disorder of glycosylation type 1E","type":"exact"},{"name":"congenital disorder of glycosylation type 1e","type":"exact"},{"name":"congenital disorder of glycosylation type Ie","type":"exact"},{"name":"congenital disorder of glycosylation, type Ie","type":"related"}],"termid":"MONDO:0012123","terms_by_termid":{"MONDO:0012123":null},"xrefs":{"Monarch":{"xref_id":"0012123"}}}


id: MONDO:0010147
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tongue, pigmented fungiform papillae of","secondary_identifiers":["OMIM:275250","MEDGEN:336411","UMLS:C1848756"],"synonyms":[{"name":"tongue, pigmented fungiform papillae of","type":"exact"}],"termid":"MONDO:0010147","xrefs":{"Monarch":{"xref_id":"0010147"}}}


id: FYPO:0007903
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An inviable phenotype in which a cell lyses during mitotic interphase, i.e. the plasma membrane ruptures and cytoplasm is lost. Note that in fission yeast cell lysis, the integrity of the cell wall is also compromised.","definition_xrefs":["PMID:19189958","PomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vegetative cell lysis","termid":"FYPO:0000647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"cell lysis during mitotic interphase","synonyms":[{"name":"cell lysis during NETO","type":"narrow"},{"name":"vegetative cell lysis during interphase","type":"exact"}],"termid":"FYPO:0007903"}


id: GO:0047731
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4 catechol + 3 O2 = 2 dibenzo[1,4]dioxin-2,3-dione + 6 H2O.","definition_xrefs":["MetaCyc:CATECHOL-OXIDASE-DIMERIZING-RXN","EC:1.1.3.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor","termid":"GO:0016899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"catechol oxidase (dimerizing) activity","secondary_identifiers":["RHEA:12809"],"synonyms":[{"name":"catechol:oxygen oxidoreductase (dimerizing)","type":"related"}],"termid":"GO:0047731"}


id: PR:000050569
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A septation initiation network scaffold protein cdc11 (Schizosaccharomyces pombe) that includes at least one phosphorylated residue, and is the predominant phosphorylated form observed during interphase.","definition_xrefs":["PMID:12546793","PRO:DAN","PomBase:VW"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cdc11/HypoPhos","pombase_gene_id":"SPCC1739.11c","synonyms":[{"name":"PomBase_original_PRO_term_name: septation initiation network scaffold protein cdc11 hypophosphorylated form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-cdc11/HypoPhos+","type":"exact"},{"name":"cdc11/HypoPhos","type":"exact"},{"name":"cdc11p hypophosphorylated form (2) (Schizosaccharomyces pombe)","type":"related"},{"name":"cdc11p interphase form (Schizosaccharomyces pombe)","type":"related"}],"termid":"PR:000050569"}


id: PR:C6Y4A8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC23D3.16 gene.","definition_xrefs":["PRO:DNx","UniProtKB:C6Y4A8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C23D3.16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23D3.16","synonyms":[{"name":"Spom972h-SPAC23D3.16","type":"exact"}],"termid":"PR:C6Y4A8"}


id: MONDO:0010373
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary ovarian failure in which the cause of the disease is a mutation in the POF1B gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited primary ovarian failure","termid":"MONDO:0019852"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"premature ovarian failure 2B","secondary_identifiers":["DOID:0080859","OMIM:300604","MEDGEN:337159","UMLS:C1845105","MESH:C564476"],"synonyms":[{"name":"POF1B primary ovarian failure","type":"exact"},{"name":"POF2B","type":"related"},{"name":"premature ovarian failure 2B","type":"exact"},{"name":"premature ovarian failure 2B, X-linked recessive","type":"exact"},{"name":"premature ovarian failure type 2B","type":"exact"},{"name":"primary ovarian failure caused by mutation in POF1B","type":"exact"}],"termid":"MONDO:0010373","xrefs":{"Monarch":{"xref_id":"0010373"}}}


id: GO:1901487
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Positive regulation of transcription factor catabolism in response to increased oxygen levels, which results in negative regulation of the SREBP signaling pathway.","definition_xrefs":["PMID:22833559","GOC:TermGenie","GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of SREBP signaling pathway by positive regulation of transcription factor catabolic process in response to increased oxygen levels (obsolete GO:1901487)","synonyms":[{"name":"negative regulation of SREBP signaling by acceleration of SREBP degradation, in response to increased oxygen levels","type":"narrow"},{"name":"negative regulation of SREBP signaling by positive regulation of transcription factor catabolism in response to increased oxygen levels","type":"exact"},{"name":"negative regulation of SREBP signaling pathway by positive regulation of SREBP degradation, in response to elevated oxygen","type":"narrow"},{"name":"negative regulation of SREBP-mediated signaling pathway in presence of oxygen by positive regulation of transcription factor catabolic process","type":"related"},{"name":"negative regulation of SREBP-mediated signaling pathway in response to increased oxygen levels by positive regulation of transcription factor catabolic process","type":"exact"}],"termid":"GO:1901487"}


id: PBO:0040691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRCA2 and CDKN1A interacting protein","termid":"PBO:0040691"}


id: GO:0060707
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a trophoblast giant cell of the placenta. Trophoblast giant cells are the cell of the placenta that line the maternal decidua.","definition_xrefs":["GOC:dph","PMID:16269175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation involved in embryonic placenta development","termid":"GO:0060706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trophoblast giant cell differentiation","termid":"GO:0060707"}


id: PBO:0056963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 23a","termid":"PBO:0056963"}


id: MONDO:0013053
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Microcephaly-facio-cardio-skeletal syndrome, Hadziselimovic type is a rare syndrome with cardiac malformations, characterized by prenatal-onset growth retardation (low birth weight and short stature), hypotonia, developmental delay and intellectual disability associated with microcephaly and craniofacial (low anterior hairline, hypotelorism, thick lips with carp-shaped mouth, high-arched palate, low-set ears), cardiac (conotruncal heart malformations such as tetralogy of Fallot) and skeletal (hypoplastic thumbs and first metacarpals) abnormalities.","definition_xrefs":["Orphanet:217026"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart disorder","termid":"MONDO:0005267"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"microcephaly-facio-cardio-skeletal syndrome, Hadziselimovic type","secondary_identifiers":["MESH:C567850","SCTID:719395001","OMIM:612946","UMLS:C2751878","MEDGEN:414129","GARD:17116"],"synonyms":[{"name":"Hadziselimovic syndrome","type":"exact"},{"name":"microcephaly-faciocardioskeletal syndrome","type":"exact"}],"termid":"MONDO:0013053","xrefs":{"Monarch":{"xref_id":"0013053"}}}


id: _global:inhibited_by
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"Identifies a chemical substance that decreases the activity of the gene product.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inhibited_by","secondary_identifiers":["GOREL:0000508"],"synonyms":[{"name":"activity_decreased_by","type":"exact"},{"name":"inhibited by","type":"exact"},{"name":"inhibited_by_chemical","type":"exact"},{"name":"inhibited_by_substance","type":"exact"}],"termid":"_global:inhibited_by"}


id: PBO:0068567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 18, pseudogene","termid":"PBO:0068567"}


id: MONDO:0021150
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete genetic characteristic (obsolete MONDO:0021150)","termid":"MONDO:0021150","xrefs":{"Monarch":{"xref_id":"0021150"}}}


id: RO:0000092
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of has disposition","direct_ancestors":[{"relation_name":"is_a","term_name":"inheres_in","termid":"RO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"disposition_of","termid":"RO:0000092"}


id: PBO:0047467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fc receptor like 6 pseudogene 1","termid":"PBO:0047467"}


id: PBO:0087512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of heterohexameric prefoldin; prefoldin binds cytosolic chaperonin and transfers target proteins to it; involved in the biogenesis of actin and of alpha- and gamma-tubulin; prefoldin complex also localizes to chromatin of actively transcribed genes in the nucleus and facilitates transcriptional elongation","termid":"PBO:0087512"}


id: GO:0004448
data:
  {"annotated_genes":["SJAG_04362"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75619],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004450"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: isocitrate + NAD(P)+ = 2-oxoglutarate + CO2 + NAD(P)H.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04362":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"isocitrate dehydrogenase [NAD(P)+] activity","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"IDH activity","type":"related"},{"name":"IDP activity","type":"related"},{"name":"isocitrate dehydrogenase activity","type":"exact"},{"name":"isocitric acid dehydrogenase activity","type":"exact"},{"name":"isocitric dehydrogenase activity","type":"exact"},{"name":"oxalosuccinate carboxylase activity","type":"exact"},{"name":"oxalosuccinate decarboxylase activity","type":"exact"},{"name":"oxalosuccinic decarboxylase activity","type":"exact"}],"termid":"GO:0004448","terms_by_termid":{"GO:0004450":null}}


id: PBO:0040087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arylsulfatase G","termid":"PBO:0040087"}


id: GO:0002770
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by an extracellular ligand binding to a receptor on the surface of a T cell capable of inhibiting an immune effector process contributing to an immune response.","definition_xrefs":["PMID:15258309","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune response-inhibiting cell surface receptor signaling pathway","termid":"GO:0002767"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"T cell inhibitory signaling pathway","synonyms":[{"name":"T cell inhibitory signalling pathway","type":"exact"},{"name":"T lymphocyte inhibitory signaling pathway","type":"exact"},{"name":"T-cell inhibitory signaling pathway","type":"exact"},{"name":"T-lymphocyte inhibitory signaling pathway","type":"exact"}],"termid":"GO:0002770"}


id: PBO:0069917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1209, pseudogene","termid":"PBO:0069917"}


id: GO:0015031
data:
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id: PBO:0087652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the heterohexameric cochaperone prefoldin complex; complex binds specifically to cytosolic chaperonin and transfers target proteins to it","termid":"PBO:0087652"}


id: PBO:0028081
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_specific_nuclear_polyadenylated_mRNA_level_during_vegetative_growth","termid":"PBO:0028081"}


id: GO:0033744
data:
  {"annotated_genes":["SJAG_00419"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97479],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036456"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-methionine + thioredoxin disulfide + H2O = L-methionine (S)-S-oxide + thioredoxin.","definition_xrefs":["EC:1.8.4.13"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor","termid":"GO:0016671"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00419":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"L-methionine:thioredoxin-disulfide S-oxidoreductase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R07606","MetaCyc:1.8.4.13-RXN","RHEA:19993","GO:0000317"],"synonyms":[{"name":"L-methionine-(S)-S-oxide reductase activity","type":"narrow"},{"name":"L-methionine:oxidized-thioredoxin S-oxidoreductase activity","type":"related"},{"name":"acetylmethionine sulfoxide reductase activity","type":"related"},{"name":"fSMsr","type":"related"},{"name":"free-methionine (S)-S-oxide reductase activity","type":"related"},{"name":"methionine sulfoxide reductase activity","type":"broad"},{"name":"methionine-S-oxide reductase activity","type":"exact"},{"name":"methyl sulfoxide reductase I and II activity","type":"related"}],"termid":"GO:0033744","terms_by_termid":{"GO:0036456":null}}


id: GO:0097711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The docking of a cytosolic centriole/basal body to the plasma membrane via the ciliary transition fibers. In some species this may happen via an intermediate step, by first docking to the ciliary vesicle via the ciliary transition fibers. The basal body-ciliary vesicle then relocates to the plasma membrane, followed by the ciliary vesicle fusing with the plasma membrane, effectively attaching the basal body to the plasma membrane.","definition_xrefs":["PMID:26981235","PMID:25686250","PMID:23530209","PMID:23348840","PMID:13978319","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle localization by membrane tethering","termid":"GO:0140056"},{"relation_name":"part_of","term_name":"cilium assembly","termid":"GO:0060271"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0140056"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0051179","GO:0140056"],"is_obsolete":false,"name":"ciliary basal body-plasma membrane docking","secondary_identifiers":["Reactome:R-HSA-5620912"],"synonyms":[{"name":"anchoring of the basal body to the plasma membrane","type":"related"},{"name":"ciliary basal body docking","type":"exact"}],"termid":"GO:0097711"}


id: FYPO:0007417
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which telomere clustering is normal (i.e. indistinguishable from wild type) during G0 phase. Normally, telomeres cluster at the nuclear periphery during vegetative growth or G0, but whereas telomeres form two to three clusters in vegetative cells, a single cluster forms in G0.","definition_xrefs":["PomBase:mah","GO:0120110","PMID:31980821"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal telomere localization","termid":"FYPO:0004973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal telomere clustering during G0","synonyms":[{"name":"normal telomere clustering during cell quiescence","type":"exact"},{"name":"normal telomere clustering during quiescence","type":"exact"}],"termid":"FYPO:0007417"}


id: PBO:0058364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4736","termid":"PBO:0058364"}


id: MONDO:1010016
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mitral valve stenosis that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart disorder, non-human animal","termid":"MONDO:1012982"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitral valve stenosis, non-human animal","secondary_identifiers":["OMIA:000655"],"termid":"MONDO:1010016","xrefs":{"Monarch":{"xref_id":"1010016"}}}


id: PBO:0030622
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_alpha-glucosidase_activity","termid":"PBO:0030622"}


id: FYPO:0007538
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to paromomycin. Cells stop growing (and may die) at a concentration of paromomycin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0005447","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to paromomycin","synonyms":[{"name":"hypersensitive to paromomycin","type":"exact"},{"name":"sensitive to paromomycin during mitotic cell cycle","type":"related"},{"name":"sensitive to paromomycin during vegetative growth","type":"exact"}],"termid":"FYPO:0007538"}


id: GO:0061619
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of mannose into pyruvate, occurring through a fructose-6-phosphate intermediate, with the concomitant production of ATP and NADH.","definition_xrefs":["ISBN:0879010479","ISBN:0201090910","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannose catabolic process","termid":"GO:0019309"},{"relation_name":"is_a","term_name":"glycolytic process through fructose-6-phosphate","termid":"GO:0061615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"part_of","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281","GO:0055086","GO:0006091"],"is_obsolete":false,"name":"glycolytic process from mannose through fructose-6-phosphate","termid":"GO:0061619"}


id: RO:0002025
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A 'has effector activity' B if A and B are GO molecular functions (GO_0003674),  A 'has component activity' B and B is the effector (output function) of B.  Each compound function has only one effector activity.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"has_component_activity","termid":"RO:0002017"},{"relation_name":"is_a","term_name":"regulates","termid":"RO:0002211"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_effector_activity","termid":"RO:0002025"}


id: PBO:0000575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage and polyadenylation specificity factor complex subunit, Fip1 homolog (predicted)","termid":"PBO:0000575"}


id: GO:0043197
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A small, membranous protrusion from a dendrite that forms a postsynaptic compartment, typically receiving input from a single presynapse. They function as partially isolated biochemical and an electrical compartments. Spine morphology is variable:they can be thin, stubby, mushroom, or branched, with a continuum of intermediate morphologies. They typically terminate in a bulb shape, linked to the dendritic shaft by a restriction. Spine remodeling is though to be involved in synaptic plasticity.","definition_xrefs":["GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron spine","termid":"GO:0044309"},{"relation_name":"is_a","term_name":"postsynapse","termid":"GO:0098794"},{"relation_name":"part_of","term_name":"dendrite","termid":"GO:0030425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"dendritic spine","secondary_identifiers":["Wikipedia:Dendritic_spine","NIF_Subcellular:sao1799103720"],"synonyms":[{"name":"branched dendritic spine","type":"narrow"},{"name":"dendrite spine","type":"exact"},{"name":"mushroom dendritic spine","type":"narrow"},{"name":"sessile dendritic spine","type":"narrow"},{"name":"stubby dendritic spine","type":"narrow"},{"name":"thin dendritic spine","type":"narrow"}],"termid":"GO:0043197"}


id: PBO:0086289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a role in determining mitochondrial architecture; inner membrane protein that interacts physically and genetically with the MICOS complex and is required for its integrity","termid":"PBO:0086289"}


id: PBO:0078538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 31","termid":"PBO:0078538"}


id: GO:0000725
data:
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id: PBO:0070379
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho associated coiled-coil containing protein kinase 1","termid":"PBO:0070379"}


id: PBO:0004905
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GET complex subunit Get1 (predicted)","termid":"PBO:0004905"}


id: MONDO:0100342
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A grade III or grade IV glioma arising from the central nervous system. This category includes glioblastoma, anaplastic astrocytoma, anaplastic ependymoma, anaplastic oligodendroglioma, and anaplastic oligoastrocytoma.","definition_xrefs":["NCIT:C4822"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system cancer","termid":"MONDO:0002714"},{"relation_name":"is_a","term_name":"high grade malignant neoplasm","termid":"MONDO:0020665"},{"relation_name":"is_a","term_name":"glioma","termid":"MONDO:0021042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant glioma","secondary_identifiers":["MedDRA:10018338","MEDGEN:107826","UMLS:C0555198","DOID:3070","ICDO:9380/3"],"synonyms":[{"name":"malignant neuroglial tumour","type":"exact"},{"name":"neuroglial tumor","type":"broad"},{"name":"neuroglial tumour","type":"broad"},{"name":"malignant neuroglial neoplasm","type":"exact"},{"name":"malignant neuroglial tumor","type":"exact"},{"name":"glial cell tumor","type":"exact"},{"name":"glial cell tumour","type":"exact"},{"name":"glioma","type":"broad"},{"name":"glioma, malignant","type":"exact"},{"name":"high grade glioma","type":"exact"},{"name":"high-grade glioma","type":"exact"},{"name":"malignant glial neoplasm","type":"exact"},{"name":"malignant glial tumor","type":"exact"},{"name":"malignant glial tumour","type":"exact"},{"name":"malignant glioma","type":"exact"}],"termid":"MONDO:0100342","xrefs":{"Monarch":{"xref_id":"0100342"}}}


id: MONDO:0016170
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Chronic form of polyradiculoneuropathy.","definition_xrefs":["MONDO:patterns/chronic"],"gene_count":0,"genotype_count":0,"name":"obsolete chronic polyradiculoneuropathy (obsolete MONDO:0016170)","secondary_identifiers":["Orphanet:208978"],"synonyms":[{"name":"polyradiculoneuropathy, chronic","type":"exact"}],"termid":"MONDO:0016170","xrefs":{"Monarch":{"xref_id":"0016170"}}}


id: PBO:0001500
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  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hepatoma","termid":"PBO:0001500"}


id: PBO:0049057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 62","termid":"PBO:0049057"}


id: MONDO:0020371
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Essential iris atrophy is a clinical variant of iridocorneal endothelial (ICE) syndrome, characterized by progressive iris atrophy and holes present on the surface of the iris, corneal edema, corectopia, uveal ectropion and anterior synechiae. Secondary glaucoma is also a common complication of the disease.","definition_xrefs":["Orphanet:98981"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iridocorneal endothelial syndrome","termid":"MONDO:0018988"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"essential iris atrophy","secondary_identifiers":["GARD:19611","ICD9:364.51","MEDGEN:543177","NORD:1109","SCTID:25913001","UMLS:C0271111"],"termid":"MONDO:0020371","xrefs":{"Monarch":{"xref_id":"0020371"}}}


id: PBO:0087506
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of HDA1 histone deacetylase complex; tetrameric trichostatin A-sensitive class II histone deacetylase complex contains Hda1p homodimer and an Hda2p-Hda3p heterodimer; involved in telomere maintenance; Hda2p relocalizes to cytosol in response to hypoxia; other members of the HDA1 histone deacetylase complex, which regulates aging through trehalose metabolism, are Hda1p and Hda3p","termid":"PBO:0087506"}


id: GO:1904420
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of telomeric loop formation.","definition_xrefs":["GOC:BHF_telomere","GOC:nc","GOC:BHF","GO_REF:0000058","GOC:TermGenie","PMID:22579284"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of telomere maintenance","termid":"GO:0032206"},{"relation_name":"is_a","term_name":"regulation of telomeric loop formation","termid":"GO:1904418"},{"relation_name":"positively_regulates","term_name":"telomeric loop formation","termid":"GO:0031627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0032200"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0032200"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0032200"],"is_obsolete":false,"name":"positive regulation of telomeric loop formation","synonyms":[{"name":"activation of t-loop biosynthesis","type":"narrow"},{"name":"activation of t-loop formation","type":"narrow"},{"name":"activation of telomeric loop formation","type":"narrow"},{"name":"positive regulation of t-loop biosynthesis","type":"exact"},{"name":"positive regulation of t-loop formation","type":"exact"},{"name":"up regulation of t-loop biosynthesis","type":"exact"},{"name":"up regulation of t-loop formation","type":"exact"},{"name":"up regulation of telomeric loop formation","type":"exact"},{"name":"up-regulation of t-loop biosynthesis","type":"exact"},{"name":"up-regulation of t-loop formation","type":"exact"},{"name":"up-regulation of telomeric loop formation","type":"exact"},{"name":"upregulation of t-loop biosynthesis","type":"exact"},{"name":"upregulation of t-loop formation","type":"exact"},{"name":"upregulation of telomeric loop formation","type":"exact"}],"termid":"GO:1904420"}


id: GO:0098852
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id: PBO:0070551
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id: PBO:0030564
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_tyrosine_level","termid":"PBO:0030564"}


id: PBO:0047002
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A5, pseudogene","termid":"PBO:0047002"}


id: PBO:0087249
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine/threonine MAP kinase; coordinates expression of all 19S regulatory particle assembly-chaperones (RACs) to control proteasome abundance; involved in regulating maintenance of cell wall integrity, cell cycle progression, nuclear mRNA retention in heat shock, septum assembly; required for mitophagy, pexophagy; affects recruitment of mitochondria to phagophore assembly site; plays role in adaptive response of cells to cold; regulated by the PKC1-mediated signaling pathway","termid":"PBO:0087249"}


id: MONDO:0020230
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  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete renal disease with cataract (obsolete MONDO:0020230)","secondary_identifiers":["Orphanet:98646"],"termid":"MONDO:0020230","xrefs":{"Monarch":{"xref_id":"0020230"}}}


id: MONDO:0012542
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"psoriasis, susceptibility to","termid":"MONDO:0100171"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"psoriasis 8, susceptibility to","secondary_identifiers":["DOID:0111288","UMLS:C1853143","MEDGEN:377839","OMIM:610707"],"synonyms":[{"name":"PSORS8","type":"exact"},{"name":"psoriasis 8, susceptibility to","type":"exact"},{"name":"psoriasis susceptibility 8","type":"exact"}],"termid":"MONDO:0012542","xrefs":{"Monarch":{"xref_id":"0012542"}}}


id: GO:0031127
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of an L-fucosyl group from GDP-beta-L-fucose to an acceptor molecule to form an alpha-(1->2) linkage.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fucosyltransferase activity","termid":"GO:0008417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"alpha-(1,2)-fucosyltransferase activity","synonyms":[{"name":"alpha-(1->2)-fucosyltransferase activity","type":"exact"},{"name":"alpha-1,2-fucosyltransferase activity","type":"exact"}],"termid":"GO:0031127"}


id: SO:0000353
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  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"assembly","termid":"SO:0001248"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence_assembly","secondary_identifiers":["http://en.wikipedia.org/wiki/Sequence_assembly"],"synonyms":[{"name":"sequence assembly","type":"exact"}],"termid":"SO:0000353"}


id: PBO:0071949
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S4 Y-linked 2","termid":"PBO:0071949"}


id: PBO:0058682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6810","termid":"PBO:0058682"}


id: FYPO:0001720
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a specific transport process is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport phenotype","termid":"FYPO:0000149"},{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal transport","termid":"FYPO:0001720"}


id: GO:1905824
data:
  {"annotated_genes":["SJAG_01837"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[118702],"is_not":false,"summary":null,"term":"GO:1905824"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mitotic sister chromatid arm separation.","definition_xrefs":["GOC:als","PMID:18765790","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mitotic sister chromatid separation","termid":"GO:1901970"},{"relation_name":"is_a","term_name":"regulation of mitotic sister chromatid arm separation","termid":"GO:1905822"},{"relation_name":"positively_regulates","term_name":"mitotic sister chromatid arm separation","termid":"GO:1990891"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01837":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"positive regulation of mitotic sister chromatid arm separation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of mitotic sister chromatid arm separation","type":"narrow"},{"name":"up regulation of mitotic sister chromatid arm separation","type":"exact"},{"name":"up-regulation of mitotic sister chromatid arm separation","type":"exact"},{"name":"upregulation of mitotic sister chromatid arm separation","type":"exact"}],"termid":"GO:1905824","terms_by_termid":{"GO:1905824":null}}


id: PBO:0002682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"box H/ACA snoRNP complex subunit Nhp2","termid":"PBO:0002682"}


id: GO:0140976
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cellular processes and signaling pathways by which a cell responds to disruption of the integrity of its plasma membrane by another organism. Some toxins produced by other organisms can form pores in membranes, or affect the membrane permeability.","definition_xrefs":["PMID:21518219","PMID:17234446"],"direct_ancestors":[{"relation_name":"is_a","term_name":"defense response to symbiont","termid":"GO:0140546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"host defense response against symbiont-mediated perturbation of plasma membrane integrity","synonyms":[{"name":"defense response against disruption of plasma membrane integrity","type":"exact"},{"name":"defense response against perturbation of plasma membrane integrity","type":"related"}],"termid":"GO:0140976"}


id: GO:0044343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that modulates the rate or frequency of pancreatic B cell proliferation. Pancreatic B cell are cells of the pancreas that secrete insulin.","definition_xrefs":["GOC:yaf","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete canonical Wnt signaling pathway involved in regulation of type B pancreatic cell proliferation (obsolete GO:0044343)","synonyms":[{"name":"canonical Wnt receptor signaling pathway involved in pancreatic beta cell proliferation","type":"related"},{"name":"canonical Wnt receptor signaling pathway involved in regulation of pancreatic B cell proliferation","type":"exact"},{"name":"canonical Wnt receptor signaling pathway involved in regulation of type B pancreatic cell proliferation","type":"exact"},{"name":"canonical Wnt receptor signalling pathway involved in regulation of pancreatic B cell proliferation","type":"exact"},{"name":"canonical Wnt receptor signalling pathway involved in regulation of type B pancreatic cell proliferation","type":"exact"},{"name":"canonical Wnt-activated signaling pathway involved in regulation of type B pancreatic cell proliferation","type":"exact"}],"termid":"GO:0044343"}


id: PBO:0027546
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-branched_mitochondria","termid":"PBO:0027546"}


id: GO:0070585
data:
  {"annotated_genes":["SJAG_04072","SJAG_01004","SJAG_04641","SJAG_05259","SJAG_05302","SJAG_01405","SJAG_02361","SJAG_02016","SJAG_00687","SJAG_04014","SJAG_01780","SJAG_04996","SJAG_00404","SJAG_03502","SJAG_01442","SJAG_02917","SJAG_02397","SJAG_01949","SJAG_00569","SJAG_01951","SJAG_01560","SJAG_01684","SJAG_01647","SJAG_03358","SJAG_03415","SJAG_01640","SJAG_04218","SJAG_01120","SJAG_00373","SJAG_01917","SJAG_02355","SJAG_02077","SJAG_01879","SJAG_02398","SJAG_04336","SJAG_03416","SJAG_03648","SJAG_02809","SJAG_07010","SJAG_04533","SJAG_03560","SJAG_02034","SJAG_00564","SJAG_02524","SJAG_01597","SJAG_03515","SJAG_04432","SJAG_03633","SJAG_01615","SJAG_05300","SJAG_00196","SJAG_02797","SJAG_04208"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99055,100414,96961],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0160203"},{"annotations":[78855,79480],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045041"},{"annotations":[109540,117249,104641,101354,118807,119278,113800,96424,101170,108144,101470,90201,107153,92778,98807,102255,109486,91420,109564,105230,111869],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030150"},{"annotations":[104872,109541,90528,79563,75199,75745,118289,58405,77483,109565,115206],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045039"},{"annotations":[80332,76246,58530,80393,80074],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0032979"},{"annotations":[100155,100506,71702,112392,109542,113794,59047,112039,78383],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045040"},{"annotations":[82146,104152,79976,81761,78611,71594],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006627"},{"annotations":[100316,104406,68631],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006626"}]},"cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within the mitochondrion.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to organelle","termid":"GO:0033365"}],"gene_count":53,"genes_by_uniquename":{"SJAG_00196":null,"SJAG_00373":null,"SJAG_00404":null,"SJAG_00564":null,"SJAG_00569":null,"SJAG_00687":null,"SJAG_01004":null,"SJAG_01120":null,"SJAG_01405":null,"SJAG_01442":null,"SJAG_01560":null,"SJAG_01597":null,"SJAG_01615":null,"SJAG_01640":null,"SJAG_01647":null,"SJAG_01684":null,"SJAG_01780":null,"SJAG_01879":null,"SJAG_01917":null,"SJAG_01949":null,"SJAG_01951":null,"SJAG_02016":null,"SJAG_02034":null,"SJAG_02077":null,"SJAG_02355":null,"SJAG_02361":null,"SJAG_02397":null,"SJAG_02398":null,"SJAG_02524":null,"SJAG_02797":null,"SJAG_02809":null,"SJAG_02917":null,"SJAG_03358":null,"SJAG_03415":null,"SJAG_03416":null,"SJAG_03502":null,"SJAG_03515":null,"SJAG_03560":null,"SJAG_03633":null,"SJAG_03648":null,"SJAG_04014":null,"SJAG_04072":null,"SJAG_04208":null,"SJAG_04218":null,"SJAG_04336":null,"SJAG_04432":null,"SJAG_04533":null,"SJAG_04641":null,"SJAG_04996":null,"SJAG_05259":null,"SJAG_05300":null,"SJAG_05302":null,"SJAG_07010":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to mitochondrion","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"protein localisation in mitochondrion","type":"exact"},{"name":"protein localization in mitochondrion","type":"exact"}],"termid":"GO:0070585","terms_by_termid":{"GO:0006626":null,"GO:0006627":null,"GO:0030150":null,"GO:0032979":null,"GO:0045039":null,"GO:0045040":null,"GO:0045041":null,"GO:0160203":null}}


id: PBO:0117085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPARGC1A antisense RNA 1","termid":"PBO:0117085"}


id: PBO:0054614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2019","termid":"PBO:0054614"}


id: PBO:0005476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme Mms2","termid":"PBO:0005476"}


id: MONDO:0005586
data:
  {"annotated_genes":["SJAG_03677","SJAG_03453","SJAG_03429"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89034],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014937"},{"annotations":[88576],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009050"},{"annotations":[87717],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008097"}]},"cv_name":"mondo","definition":"A benign or malignant neoplasm that affects the anatomic structures of the head and neck region. Representative examples of benign neoplasms include salivary gland pleomorphic adenoma and nasal cavity papilloma. Representative examples of malignant neoplasms include oral cavity squamous cell carcinoma, laryngeal squamous cell carcinoma, and salivary gland carcinoma.","definition_xrefs":["NCIT:C3077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm","termid":"MONDO:0005070"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03429":null,"SJAG_03453":null,"SJAG_03677":null},"genotype_count":0,"is_obsolete":false,"name":"head and neck neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0018671","MEDGEN:6728","EFO:0005950","ONCOTREE:HEADNECK","SCTID:255055008","ICD9:239.89"],"synonyms":[{"name":"craniocervical region neoplasm","type":"exact"},{"name":"craniocervical region neoplasm (disease)","type":"exact"},{"name":"craniocervical region tumor","type":"exact"},{"name":"craniocervical region tumour","type":"exact"},{"name":"head and neck neoplasm","type":"exact"},{"name":"head and neck neoplasm (excluding central nervous system)","type":"exact"},{"name":"head and neck tumor","type":"exact"},{"name":"head and neck tumour","type":"exact"},{"name":"neoplasm of craniocervical region","type":"exact"},{"name":"neoplasm of head and neck","type":"exact"},{"name":"neoplasm of the head and neck","type":"exact"},{"name":"tumor of craniocervical region","type":"exact"},{"name":"tumor of head and neck","type":"exact"},{"name":"tumor of the head and neck","type":"exact"},{"name":"tumour of craniocervical region","type":"exact"},{"name":"tumour of head and neck","type":"exact"},{"name":"tumour of the head and neck","type":"exact"}],"termid":"MONDO:0005586","terms_by_termid":{"MONDO:0008097":null,"MONDO:0009050":null,"MONDO:0014937":null},"xrefs":{"Monarch":{"xref_id":"0005586"}}}


id: GO:0045492
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of xylan, a polymer containing a beta-1,4-linked D-xylose backbone.","definition_xrefs":["PMID:11931668","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xylan metabolic process","termid":"GO:0045491"},{"relation_name":"is_a","term_name":"cell wall polysaccharide biosynthetic process","termid":"GO:0070592"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0071554","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"xylan biosynthetic process","synonyms":[{"name":"xylan anabolism","type":"exact"},{"name":"xylan biosynthesis","type":"exact"},{"name":"xylan formation","type":"exact"},{"name":"xylan synthesis","type":"exact"}],"termid":"GO:0045492"}


id: PBO:0065568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostaglandin I2 receptor","termid":"PBO:0065568"}


id: PBO:0066239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 46","termid":"PBO:0066239"}


id: GO:0090611
data:
  {"annotated_genes":["SJAG_03892"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75232],"is_not":false,"summary":null,"term":"GO:0090611"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a protein or peptide, via the multivesicular body (MVB) sorting pathway; proteins are sorted into MVBs, and delivered to a lysosome/vacuole for degradation. This process is independent of ubiquitination.","definition_xrefs":["PMID:22547407"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteolysis involved in protein catabolic process","termid":"GO:0051603"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03892":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"ubiquitin-independent protein catabolic process via the multivesicular body sorting pathway","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0090611","terms_by_termid":{"GO:0090611":null}}


id: GO:0030790
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + trichlorophenol = S-adenosyl-L-homocysteine + trichloroanisole.","definition_xrefs":["EC:2.1.1.136"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"chlorophenol O-methyltransferase activity","secondary_identifiers":["MetaCyc:2.1.1.136-RXN","RHEA:18909"],"synonyms":[{"name":"S-adenosyl-L-methionine:trichlorophenol O-methyltransferase activity","type":"related"},{"name":"halogenated phenol O-methyltransferase activity","type":"broad"},{"name":"trichlorophenol O-methyltransferase activity","type":"related"}],"termid":"GO:0030790"}


id: MONDO:0017318
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"hyperpigmentation of the skin","termid":"MONDO:0019289"},{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"},{"relation_name":"is_a","term_name":"neurocutaneous syndrome","termid":"MONDO:0042983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005328"],"is_obsolete":false,"name":"phakomatosis pigmentovascularis","secondary_identifiers":["ICD9:709.09","SCTID:403545005","MEDGEN:220888","GARD:4312","MESH:C537894","icd11.foundation:1768130414","Orphanet:2875","UMLS:C1274879"],"synonyms":[{"name":"PPv","type":"related"},{"name":"Phacomatosis pigmentovascularis","type":"related"},{"name":"association of cutaneous vascular malformations and different pigmentary disorders","type":"related"},{"name":"phakomatosis pigmentovascularis","type":"exact"},{"name":"port-wine stain with oculocutaneous melanosis","type":"exact"}],"termid":"MONDO:0017318","xrefs":{"Monarch":{"xref_id":"0017318"}}}


id: FYPO:0001670
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of GDP binding by a gene product (usually a protein) in a mutant is abnormal. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal molecular function","termid":"FYPO:0000707"},{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"abnormal GDP binding","termid":"FYPO:0001670"}


id: PBO:0002367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved gene with no initiator methionine","termid":"PBO:0002367"}


id: GO:0070988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of removing one or more methyl groups from a molecule.","definition_xrefs":["GOC:rl","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"demethylation","termid":"GO:0070988"}


id: GO:0043466
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The anaerobic conversion of pyrimidine nucleobases, yielding energy in the form of ATP.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase catabolic process","termid":"GO:0006208"},{"relation_name":"is_a","term_name":"nitrogenous compound fermentation","termid":"GO:0019666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281","GO:0006091"],"is_obsolete":false,"name":"pyrimidine nucleobase fermentation","synonyms":[{"name":"pyrimidine base fermentation","type":"exact"},{"name":"pyrimidine fermentation","type":"related"}],"termid":"GO:0043466"}


id: GO:0009584
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of light stimulus","termid":"GO:0009583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of visible light","synonyms":[{"name":"perception of visible light","type":"related"}],"termid":"GO:0009584"}


id: MONDO:1010111
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare and debilitating renal pain disorder characterized by chronic, severe loin pain with or without micro- or macroscopic hematuria.","definition_xrefs":["PMID:38106595","PMID:30984919","PMID:33532147"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"chronic pain syndrome","termid":"MONDO:0024317"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"loin pain hematuria syndrome","synonyms":[{"name":"LPHS","type":"exact"}],"termid":"MONDO:1010111","xrefs":{"Monarch":{"xref_id":"1010111"}}}


id: GO:0047871
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(2),6-disulfo-D-glucosamine + H2O = N-sulfo-D-glucosamine + H+ + sulfate.","definition_xrefs":["EC:3.1.6.11","RHEA:15517"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfuric ester hydrolase activity","termid":"GO:0008484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787","GO:0016788"],"is_obsolete":false,"name":"disulfoglucosamine-6-sulfatase activity","secondary_identifiers":["MetaCyc:DISULFOGLUCOSAMINE-6-SULFATASE-RXN","KEGG_REACTION:R03216"],"synonyms":[{"name":"6,N-disulfoglucosamine 6-O-sulfohydrolase activity","type":"related"},{"name":"N,6-O-disulfo-D-glucosamine 6-sulfohydrolase activity","type":"related"},{"name":"N-sulfoglucosamine-6-sulfatase activity","type":"related"},{"name":"disulphoglucosamine-6-sulphatase activity","type":"exact"}],"termid":"GO:0047871"}


id: GO:0001965
data:
  {"annotated_genes":["SJAG_02027"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74123],"is_not":false,"summary":null,"term":"GO:0001965"}]},"cv_name":"molecular_function","definition":"Binding to a G-protein alpha subunit. The alpha subunit binds a guanine nucleotide.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02027":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"G-protein alpha-subunit binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"G-alpha protein subunit binding","type":"exact"}],"termid":"GO:0001965","terms_by_termid":{"GO:0001965":null}}


id: FYPO:0005658
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the frequency of crossover associated with a gene conversion event during meiotic recombination is abnormal.","definition_xrefs":["PomBase:mah","PMID:25414342"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic recombination","termid":"FYPO:0000008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000293","FYPO:0000631","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal frequency of meiotic crossover associated with gene conversion","synonyms":[{"name":"abnormal levels of meiotic crossover associated with a gene conversion event","type":"exact"}],"termid":"FYPO:0005658"}


id: PR:O42918
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- meu7 gene.","definition_xrefs":["UniProtKB:O42918","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-amylase 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16A3.13","synonyms":[{"name":"1,4-alpha-D-glucan glucanohydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-meu7","type":"exact"},{"name":"meiotic expression up-regulated protein 7 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42918"}


id: PBO:0051307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1/OR1-1 (pseudogene)","termid":"PBO:0051307"}


id: PBO:0076910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor A, mitochondrial pseudogene 2","termid":"PBO:0076910"}


id: MONDO:0019525
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tetrasomy X is a sex chromosome anomaly caused by the presence of two extra X chromosomes in females (48,XXXX instead of 46,XX).","definition_xrefs":["Orphanet:9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited primary ovarian failure","termid":"MONDO:0019852"},{"relation_name":"is_a","term_name":"tetrasomy","termid":"MONDO:0030502"},{"relation_name":"is_a","term_name":"chromosome X disorder","termid":"MONDO:0700027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"tetrasomy X","secondary_identifiers":["UMLS:C0265496","ICD9:758.81","GARD:7754","icd11.foundation:1181464236","MEDGEN:120544","MESH:C536502","SCTID:10567003"],"synonyms":[{"name":"48 XXXX","type":"related"},{"name":"48 XXXX syndrome","type":"related"},{"name":"48,XXXX syndrome","type":"exact"},{"name":"quadruple X","type":"exact"},{"name":"tetra X","type":"exact"},{"name":"tetrasomy type X","type":"exact"}],"termid":"MONDO:0019525","xrefs":{"Monarch":{"xref_id":"0019525"}}}


id: PBO:0074763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 1A","termid":"PBO:0074763"}


id: GO:0070995
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A metabolic process that results in the oxidation of reduced nicotinamide adenine dinucleotide, NADPH, to the oxidized form, NADP+.","definition_xrefs":["GOC:mah","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete NADPH oxidation (obsolete GO:0070995)","synonyms":[{"name":"NADP (reduced) dehydrogenation","type":"exact"},{"name":"NADP (reduced) oxidation","type":"exact"},{"name":"NADPH dehydrogenation","type":"exact"},{"name":"reduced NADP dehydrogenation","type":"exact"},{"name":"reduced NADP oxidation","type":"exact"},{"name":"reduced nicotinamide adenine dinucleotide phosphate dehydrogenation","type":"exact"},{"name":"reduced nicotinamide adenine dinucleotide phosphate oxidation","type":"exact"}],"termid":"GO:0070995"}


id: FYPO:0002391
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at ribosomal DNA repeat regions is decreased.","definition_xrefs":["PMID:24945319","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to chromatin at ncRNA genes","termid":"FYPO:0004346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to chromatin at rDNA","secondary_identifiers":["FYPO:0006350"],"synonyms":[{"name":"decreased protein localisation to chromatin at rDNA","type":"exact"},{"name":"decreased protein localization to chromatin at rDNA during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to chromatin at rDNA during vegetative growth","type":"exact"},{"name":"decreased protein localization to chromatin at rRNA genes","type":"exact"},{"name":"decreased protein localization to chromatin at ribosomal DNA","type":"exact"},{"name":"decreased protein localization to rDNA","type":"exact"},{"name":"reduced protein localization to chromatin at rDNA","type":"exact"}],"termid":"FYPO:0002391"}


id: GO:0140329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a lysophospholipid molecule from one leaflet of a membrane bilayer to the opposite leaflet.","definition_xrefs":["PMID:15661733"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid translocation","termid":"GO:0045332"},{"relation_name":"is_a","term_name":"lysophospholipid transport","termid":"GO:0051977"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0061024","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"lysophospholipid translocation","termid":"GO:0140329"}


id: PBO:0113205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial aminopeptidase; cleaves N termini of at least 38 imported proteins after cleavage by the mitochondrial processing peptidase (MPP), thereby increasing their stability; member of aminopeptidase P family; exists in rapid equilibrium between monomer and dimer, with dimer being active species; ortholog of human gene XPNPEP3, which is mutated in rare hereditary kidney disease similar to nephronophthisis","termid":"PBO:0113205"}


id: PBO:0091724
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by D. melanogaster CDC2","termid":"PBO:0091724"}


id: SO:0000378
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"DsrA RNA regulates both transcription, by overcoming transcriptional silencing by the nucleoid-associated H-NS protein, and translation, by promoting efficient translation of the stress sigma factor, RpoS. These two activities of DsrA can be separated by mutation: the first of three stem-loops of the 85 nucleotide RNA is necessary for RpoS translation but not for anti-H-NS action, while the second stem-loop is essential for antisilencing and less critical for RpoS translation. The third stem-loop, which behaves as a transcription terminator, can be substituted by the trp transcription terminator without loss of either DsrA function. The sequence of the first stem-loop of DsrA is complementary with the upstream leader portion of RpoS messenger RNA, suggesting that pairing of DsrA with the RpoS message might be important for translational regulation.","direct_ancestors":[{"relation_name":"is_a","term_name":"small_regulatory_ncRNA","termid":"SO:0000370"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DsrA_RNA","secondary_identifiers":["http://en.wikipedia.org/wiki/DsrA_RNA"],"synonyms":[{"name":"DsrA RNA","type":"exact"}],"termid":"SO:0000378"}


id: GO:0102453
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-coumaryl-CoA + H+ + an anthocyanidin-3-O-beta-D-glucoside = coenzyme A + H+ + an anthocyanidin-3-O-[6-O-(hydroxycinnamoyl)-beta-D-glucoside].","definition_xrefs":["RHEA:35411","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016746","GO:0003674"],"is_obsolete":false,"name":"anthocyanidin 3-O-glucoside 6''-O-acyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13959","EC:2.3.1.215"],"termid":"GO:0102453"}


id: PBO:0041212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C1D nuclear receptor corepressor","termid":"PBO:0041212"}


id: PBO:0067358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 456, pseudogene","termid":"PBO:0067358"}


id: GO:1901073
data:
  {"annotated_genes":["SJAG_02845","SJAG_00978","SJAG_00442","SJAG_03723","SJAG_04728","SJAG_04868"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112041,76005,72755,80133,73694,76215],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006031"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glucosamine-containing compounds (glucosamines).","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino sugar biosynthetic process","termid":"GO:0046349"},{"relation_name":"is_a","term_name":"glucosamine-containing compound metabolic process","termid":"GO:1901071"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00442":null,"SJAG_00978":null,"SJAG_02845":null,"SJAG_03723":null,"SJAG_04728":null,"SJAG_04868":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glucosamine-containing compound biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"glucosamine-containing compound anabolism","type":"exact"},{"name":"glucosamine-containing compound biosynthesis","type":"exact"},{"name":"glucosamine-containing compound formation","type":"exact"},{"name":"glucosamine-containing compound synthesis","type":"exact"},{"name":"glucosamines anabolism","type":"exact"},{"name":"glucosamines biosynthesis","type":"exact"},{"name":"glucosamines biosynthetic process","type":"exact"},{"name":"glucosamines formation","type":"exact"},{"name":"glucosamines synthesis","type":"exact"}],"termid":"GO:1901073","terms_by_termid":{"GO:0006031":null}}


id: FYPO:0002795
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell contains fewer, but larger, vacuoles than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"large vacuoles during vegetative growth","termid":"FYPO:0000123"},{"relation_name":"is_a","term_name":"vacuoles present in decreased numbers during vegetative growth","termid":"FYPO:0002793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"large vacuoles present in decreased numbers during vegetative growth","synonyms":[{"name":"enlarged vacuoles present in decreased numbers during vegetative growth","type":"exact"},{"name":"large vacuoles present in decreased numbers during mitotic cell cycle","type":"related"},{"name":"large vacuoles present in reduced numbers during vegetative growth","type":"exact"}],"termid":"FYPO:0002795"}


id: MONDO:0030797
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any retinitis pigmentosa in which the cause of the disease is a mutation in the CC2D2A gene.","definition_xrefs":["PMID:30267408"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005328","MONDO:0005066"],"is_obsolete":false,"name":"retinitis pigmentosa 93","secondary_identifiers":["UMLS:C5676970","OMIM:619845","MEDGEN:1810905"],"synonyms":[{"name":"CC2D2A retinitis pigmentosa 93","type":"exact"},{"name":"RP93","type":"exact"},{"name":"retinitis pigmentosa 93","type":"exact"}],"termid":"MONDO:0030797","xrefs":{"Monarch":{"xref_id":"0030797"}}}


id: GO:0001179
data:
  {"annotated_genes":["SJAG_00202"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[81668],"is_not":false,"summary":null,"term":"GO:0001179"}]},"cv_name":"molecular_function","definition":"Binding to an RNA polymerase I transcription factor, a protein required to initiate or regulate transcription by RNA polymerase I.","definition_xrefs":["GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"general transcription initiation factor binding","termid":"GO:0140296"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00202":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"RNA polymerase I general transcription initiation factor binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"RNA polymerase I transcription factor binding","type":"broad"}],"termid":"GO:0001179","terms_by_termid":{"GO:0001179":null}}


id: MONDO:0700231
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any exudative vitreoretinopathy caused by variants in the TSPAN12 gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"exudative vitreoretinopathy","termid":"MONDO:0019516"},{"relation_name":"is_a","term_name":"TSPAN12-related vitreoretinopathy","termid":"MONDO:0100484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"TSPAN12-related exudative vitreoretinopathy","synonyms":[{"name":"TSPAN12-related exudative vitreoretinopathy","type":"exact"}],"termid":"MONDO:0700231","xrefs":{"Monarch":{"xref_id":"0700231"}}}


id: GO:1903622
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of RNA polymerase III activity.","definition_xrefs":["GO_REF:0000059","GOC:TermGenie","PMID:25392932"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of RNA polymerase III activity (obsolete GO:1903622)","synonyms":[{"name":"regulation of DNA-directed RNA polymerase activity involved in transcription from RNA polymerase III promoter","type":"exact"}],"termid":"GO:1903622"}


id: GO:1905816
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of dorsal/ventral axon guidance.","definition_xrefs":["PMID:18434533","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of axon guidance","termid":"GO:1902668"},{"relation_name":"is_a","term_name":"regulation of dorsal/ventral axon guidance","termid":"GO:1905815"},{"relation_name":"negatively_regulates","term_name":"dorsal/ventral axon guidance","termid":"GO:0033563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of dorsal/ventral axon guidance","synonyms":[{"name":"down regulation of dorsal-ventral axon guidance","type":"exact"},{"name":"down regulation of dorsal/ventral axon guidance","type":"exact"},{"name":"down regulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"down regulation of dorsoventral axon guidance","type":"exact"},{"name":"down-regulation of dorsal-ventral axon guidance","type":"exact"},{"name":"down-regulation of dorsal/ventral axon guidance","type":"exact"},{"name":"down-regulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"down-regulation of dorsoventral axon guidance","type":"exact"},{"name":"downregulation of dorsal-ventral axon guidance","type":"exact"},{"name":"downregulation of dorsal/ventral axon guidance","type":"exact"},{"name":"downregulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"downregulation of dorsoventral axon guidance","type":"exact"},{"name":"inhibition of dorsal-ventral axon guidance","type":"narrow"},{"name":"inhibition of dorsal/ventral axon guidance","type":"narrow"},{"name":"inhibition of dorsal/ventral axon pathfinding","type":"narrow"},{"name":"inhibition of dorsoventral axon guidance","type":"narrow"},{"name":"negative regulation of dorsal-ventral axon guidance","type":"exact"},{"name":"negative regulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"negative regulation of dorsoventral axon guidance","type":"exact"}],"termid":"GO:1905816"}


id: FYPO:0003433
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of ornithine carbamoyltransferase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"},{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000002","FYPO:0000661","FYPO:0005447","FYPO:0001985","FYPO:0000654","FYPO:0000707"],"is_obsolete":false,"name":"abnormal ornithine carbamoyltransferase activity","termid":"FYPO:0003433"}


id: GO:0009082
data:
  {"annotated_genes":["SJAG_03243","SJAG_03985","SJAG_02841","SJAG_04098","SJAG_06635","SJAG_00107","SJAG_04149","SJAG_00396","SJAG_03562","SJAG_00830"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113098,115263,105242,105725,92566,110299,112428],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901705"},{"annotations":[59634,78930,92567,105243,81616,76569,115264],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009098"},{"annotations":[77837,58873,65024,81617,78813],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009099"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branched-chain amino acid metabolic process","termid":"GO:0009081"},{"relation_name":"is_a","term_name":"carboxylic acid biosynthetic process","termid":"GO:0046394"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00107":null,"SJAG_00396":null,"SJAG_00830":null,"SJAG_02841":null,"SJAG_03243":null,"SJAG_03562":null,"SJAG_03985":null,"SJAG_04098":null,"SJAG_04149":null,"SJAG_06635":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"branched-chain amino acid biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"branched chain family amino acid anabolism","type":"exact"},{"name":"branched chain family amino acid biosynthesis","type":"exact"},{"name":"branched chain family amino acid biosynthetic process","type":"exact"},{"name":"branched chain family amino acid formation","type":"exact"},{"name":"branched chain family amino acid synthesis","type":"exact"}],"termid":"GO:0009082","terms_by_termid":{"GO:0009098":null,"GO:0009099":null,"GO:1901705":null}}


id: PBO:0034529
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_onset_of_premeiotic_DNA_replication","termid":"PBO:0034529"}


id: GO:0016821
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete hydrolase activity, acting on acid anhydrides, involved in cellular and subcellular movement (obsolete GO:0016821)","synonyms":[{"name":"hydrolase activity, acting on acid anhydrides, involved in cellular and subcellular movement","type":"exact"}],"termid":"GO:0016821"}


id: MONDO:0013317
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Torsade-de-pointes (TdP) syndrome with short coupling interval is a very rare variant of Torsade de pointes, a polymorphic ventricular tachycardia, which is characterized by a short coupling interval of the first TdP beat on electrocardiogram in the absence of any structural heart disease. It manifests in early adulthood with syncope, often results in ventricular fibrillation and shows a high risk of sudden cardiac death.","definition_xrefs":["Orphanet:51084"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac rhythm disease","termid":"MONDO:0007263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"torsade-de-pointes syndrome with short coupling interval","secondary_identifiers":["GARD:16651","MEDGEN:462201","SCTID:718104007","UMLS:C3150851","OMIM:613600"],"synonyms":[{"name":"torsade DE pointes, short-coupled variant","type":"related"}],"termid":"MONDO:0013317","xrefs":{"Monarch":{"xref_id":"0013317"}}}


id: MONDO:0100478
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A brain disorder caused by pathogenic variants in NFIA that is characterized by developmental delay, corpus callosum agenesis/hypoplasia and craniofacial dysmorphism, such as macrocephaly (caused by hydrocephalus or ventriculomegaly), low-set ears, anteverted nostrils and micrognathia. Urinary tract defects (e.g. vesicoureteral reflux, urinary incontinence) are also frequently associated. Other reported variable manifestations include hypotonia, tethered spinal cord, Chiari type I malformation and seizures.","direct_ancestors":[{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brain malformations with or without urinary tract defects","secondary_identifiers":["OMIM:613735","MEDGEN:1392440","UMLS:C4478940"],"termid":"MONDO:0100478","xrefs":{"Monarch":{"xref_id":"0100478"}}}


id: PBO:0058992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanophilin","termid":"PBO:0058992"}


id: GO:0035527
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxypropanoate + NADP+ = 3-oxopropanoate + H+ + NADPH.","definition_xrefs":["RHEA:26438"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"3-hydroxypropionate dehydrogenase (NADP+) activity","secondary_identifiers":["KEGG_REACTION:R09289","MetaCyc:RXN-8974","EC:1.1.1.298"],"synonyms":[{"name":"3-hydroxypropanoate dehydrogenase (NADP+) activity","type":"exact"},{"name":"3-hydroxypropanoate:NADP+ oxidoreductase","type":"related"},{"name":"3-hydroxypropionate:NADP+ oxidoreductase","type":"related"}],"termid":"GO:0035527"}


id: PBO:0031760
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_complex_assembly","termid":"PBO:0031760"}


id: PBO:0084084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Guanine nucleotide exchange factor for ADP ribosylation factors (ARFs); involved in vesicular transport between the Golgi and ER, Golgi organization, and actin cytoskeleton organization; GEA1 has a paralog, GEA2, that arose from the whole genome duplication","termid":"PBO:0084084"}


id: PBO:0059448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Myb/SANT DNA binding domain containing 2","termid":"PBO:0059448"}


id: FYPO:0001141
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A conjugation phenotype in which regulation of transcription in response to mating pheromone is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transcriptional response to pheromone","termid":"FYPO:0000984"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000298","FYPO:0001985"],"is_obsolete":false,"name":"abolished transcriptional response to pheromone","synonyms":[{"name":"abolished regulation of transcription from RNA polymerase II promoter by pheromones","type":"exact"},{"name":"transcriptional response to pheromone abolished","type":"exact"}],"termid":"FYPO:0001141"}


id: GO:0030287
data:
  {"annotated_genes":["SJAG_01970","SJAG_04067"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[115341,115342],"is_not":false,"summary":null,"term":"GO:0030287"}]},"cv_name":"cellular_component","definition":"The region between the plasma membrane and the cell wall in organisms lacking an outer cell membrane such as yeast and Gram positive bacteria. The region is thinner than the equivalent in Gram negative bacteria.","definition_xrefs":["GOC:mlg","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"periplasmic space","termid":"GO:0042597"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01970":null,"SJAG_04067":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cell wall-bounded periplasmic space","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"IWZ","type":"narrow"},{"name":"cell wall bounded periplasmic space","type":"exact"},{"name":"cell wall-enclosed periplasmic space","type":"exact"},{"name":"inner wall zone","type":"narrow"}],"termid":"GO:0030287","terms_by_termid":{"GO:0030287":null}}


id: MONDO:1010691
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"AA amyloidosis that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"AA amyloidosis, non-human animal","termid":"MONDO:1010092"},{"relation_name":"is_a","term_name":"cardiomyopathy, cattle","termid":"MONDO:1010443"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AA amyloidosis, cattle","secondary_identifiers":["OMIA:000038-9913"],"termid":"MONDO:1010691","xrefs":{"Monarch":{"xref_id":"1010691"}}}


id: GO:0097591
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Fibrillar repetitive structure surrounding the ventral disc edge in Giardia species (trophozoite stage). The composition of the lateral crest is not fully known yet.","definition_xrefs":["GOC:giardia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"ventral disc","termid":"GO:0097597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"ventral disc lateral crest","synonyms":[{"name":"lateral crest","type":"broad"},{"name":"ventral disk lateral crest","type":"related"}],"termid":"GO:0097591"}


id: GO:1902404
data:
  {"annotated_genes":["SJAG_02700","SJAG_03703","SJAG_04498","SJAG_04776","SJAG_03379","SJAG_01665","SJAG_01894","SJAG_04597","SJAG_03936","SJAG_04887","SJAG_04077","SJAG_03631","SJAG_00268","SJAG_03581","SJAG_00845","SJAG_02431"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[58747,90131,97203,99575,99955,100826,102639,102870,104369,114313],"is_not":false,"summary":null,"term":"GO:1902404"},{"annotations":[105645],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1903472"},{"annotations":[115373,89394,112519,96487,96310],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1903473"}]},"cv_name":"biological_process","definition":"Any actomyosin contractile ring contraction that is involved in mitotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actomyosin contractile ring contraction","termid":"GO:0000916"},{"relation_name":"is_a","term_name":"mitotic cytokinetic process","termid":"GO:1902410"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00268":null,"SJAG_00845":null,"SJAG_01665":null,"SJAG_01894":null,"SJAG_02431":null,"SJAG_02700":null,"SJAG_03379":null,"SJAG_03581":null,"SJAG_03631":null,"SJAG_03703":null,"SJAG_03936":null,"SJAG_04077":null,"SJAG_04498":null,"SJAG_04597":null,"SJAG_04776":null,"SJAG_04887":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0000281"},{"rel_name":"part_of","termid":"GO:0030036"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0007010","GO:0000281","GO:0030036"],"is_obsolete":false,"name":"mitotic actomyosin contractile ring contraction","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle","type":"exact"},{"name":"cytokinesis, actomyosin ring contraction involved in mitotic cell cycle","type":"exact"},{"name":"mitotic actomyosin contractile ring constriction","type":"exact"}],"termid":"GO:1902404","terms_by_termid":{"GO:1902404":null,"GO:1903472":null,"GO:1903473":null}}


id: MONDO:0016317
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete limbic encephalitis with NMDA receptor antibodies (obsolete MONDO:0016317)","termid":"MONDO:0016317","xrefs":{"Monarch":{"xref_id":"0016317"}}}


id: MONDO:0002585
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Breast fibrocystic change characterized by the presence of epithelial cell hyperplasia. Epithelial atypia may be present or absent.","definition_xrefs":["NCIT:C6940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast fibrocystic disease","termid":"MONDO:0005219"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast fibrocystic change, proliferative type","secondary_identifiers":["UMLS:C1332629","DOID:3274","MEDGEN:231967"],"synonyms":[{"name":"benign proliferative breast disease","type":"exact"},{"name":"breast fibrocystic change, proliferative type","type":"exact"},{"name":"fibrocystic change, proliferative type with atypia","type":"exact"},{"name":"fibrocystic disease, proliferative type with atypia","type":"exact"},{"name":"proliferating lesion of breast without atypia","type":"exact"},{"name":"proliferating lesion of the breast without atypia","type":"exact"},{"name":"proliferative breast disease","type":"exact"},{"name":"proliferative breast lesion","type":"exact"},{"name":"proliferative fibrocystic change","type":"broad"},{"name":"proliferative type fibrocystic change of breast","type":"exact"},{"name":"proliferative type fibrocystic change of the breast","type":"exact"}],"termid":"MONDO:0002585","xrefs":{"Monarch":{"xref_id":"0002585"}}}


id: GO:0120515
data:
  {"annotated_genes":["SJAG_00947","SJAG_03471","SJAG_03909"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78674],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031956"},{"annotations":[107562,115435],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090432"},{"annotations":[107563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090434"},{"annotations":[107564],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090433"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a fatty acid + ATP + CoA = a fatty acyl-CoA + AMP + diphosphate.","definition_xrefs":["RHEA:38883"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid ligase activity","termid":"GO:0015645"},{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00947":null,"SJAG_03471":null,"SJAG_03909":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016874","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"fatty acid-CoA ligase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:BUTYRATE--COA-LIGASE-RXN"],"termid":"GO:0120515","terms_by_termid":{"GO:0031956":null,"GO:0090432":null,"GO:0090433":null,"GO:0090434":null}}


id: GO:0110051
data:
  {"annotated_genes":["SJAG_00419","SJAG_00365","SJAG_00493","SJAG_03669","SJAG_04953"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[79295,108752],"is_not":false,"summary":null,"term":"GO:0110051"},{"annotations":[108578,101938,97478],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110052"}]},"cv_name":"biological_process","definition":"A cellular process that, through single- or multi-step enzymatic reactions, repairs useless or toxic endogenous compounds, formed as by-products of primary metabolism, by converting them into useful metabolites.","definition_xrefs":["PMID:28373563","GOC:ka","PMID:23334546"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00365":null,"SJAG_00419":null,"SJAG_00493":null,"SJAG_03669":null,"SJAG_04953":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metabolite repair","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0110051","terms_by_termid":{"GO:0110051":null,"GO:0110052":null}}


id: PBO:0081360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 189","termid":"PBO:0081360"}


id: PR:O14077
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An insulin-degrading enzyme that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11851:SF64","OMA:SCHPO01213","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc protease mug138 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPACUNK4.12c","secondary_identifiers":["UniProtKB:O14077"],"synonyms":[{"name":"Spom972h-IDE","type":"exact"},{"name":"meiotically up-regulated gene 138 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14077"}


id: MONDO:0012400
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal recessive condition caused by mutation(s) in the CNTNAP2 gene, encoding contactin-associated protein-like 2. It is characterized by normal development until the onset of intractable focal seizures at age 1-9. After the onset of seizures, language regression, intellectual disability, hyperactivity, and impulsive behaviors begin to occur. The majority of children eventually fulfill the criteria for autism spectrum disorder.","definition_xrefs":["NCIT:C133743"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"epilepsy syndrome","termid":"MONDO:0015650"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"Pitt-Hopkins-like syndrome","termid":"MONDO:0016377"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cortical dysplasia-focal epilepsy syndrome","secondary_identifiers":["Orphanet:163681","MESH:C567657","MEDGEN:413258","DOID:0090130","OMIM:610042","UMLS:C2750246","GARD:16997"],"synonyms":[{"name":"CDFE syndrome","type":"exact"},{"name":"CDFES","type":"exact"},{"name":"PTHSL1","type":"related"},{"name":"Pitt-Hopkins like syndrome 1","type":"exact"},{"name":"Pitt-Hopkins-like syndrome 1","type":"related"},{"name":"cortical dysplasia-focal epilepsy syndrome","type":"exact"}],"termid":"MONDO:0012400","xrefs":{"Monarch":{"xref_id":"0012400"}}}


id: PBO:0073225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semenogelin 1","termid":"PBO:0073225"}


id: GO:0018212
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of peptidyl-tyrosine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-amino acid modification","termid":"GO:0018193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-tyrosine modification","termid":"GO:0018212"}


id: GO:0033542
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A fatty acid beta-oxidation pathway by which fatty acids having cis-double bonds on even-numbered carbons are degraded. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).","definition_xrefs":["GOC:mah","MetaCyc:PWY-5138"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid beta-oxidation","termid":"GO:0006635"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"fatty acid beta-oxidation, unsaturated, even number","termid":"GO:0033542"}


id: MONDO:0044657
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 2","termid":"MONDO:0018993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"MME-related autosomal dominant Charcot Marie Tooth disease type 2","secondary_identifiers":["Orphanet:497757","UMLS:C5567450","MEDGEN:1798873","GARD:17916"],"synonyms":[{"name":"MME-related autosomal dominant CMT2","type":"exact"},{"name":"MME-related autosomal dominant hereditary motor and sensory neuropathy type 2","type":"exact"}],"termid":"MONDO:0044657","xrefs":{"Monarch":{"xref_id":"0044657"}}}


id: PBO:0087467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of a replication-pausing checkpoint complex; Tof1p-Mrc1p-Csm3p acts at the stalled replication fork to promote sister chromatid cohesion after DNA damage, facilitating gap repair of damaged DNA; interacts with the MCM helicase; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0087467"}


id: PBO:0088232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CIA machinery protein Cia2","termid":"PBO:0088232"}


id: PBO:0064106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"praja ring finger ubiquitin ligase 2","termid":"PBO:0064106"}


id: PBO:0071340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L28 pseudogene 4","termid":"PBO:0071340"}


id: MONDO:0007418
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Darwinian tubercle of pinna","secondary_identifiers":["OMIM:124300","MEDGEN:343772","OMIM:124400","UMLS:C1852294"],"synonyms":[{"name":"Darwinian Notch","type":"related"},{"name":"Darwinian point of Pinna","type":"related"},{"name":"Darwinian tubercle of pinna","type":"exact"}],"termid":"MONDO:0007418","xrefs":{"Monarch":{"xref_id":"0007418"}}}


id: PBO:0070487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L5 pseudogene 22","termid":"PBO:0070487"}


id: GO:0046032
data:
  {"annotated_genes":["SJAG_00605","SJAG_02785","SJAG_02945","SJAG_01310","SJAG_00839","SJAG_02009","SJAG_02135","SJAG_00027","SJAG_05314","SJAG_02369","SJAG_06622","SJAG_03373","SJAG_04192","SJAG_03828","SJAG_04495","SJAG_02107","SJAG_00461","SJAG_03660","SJAG_06621","SJAG_04048","SJAG_00685","SJAG_03903","SJAG_04334","SJAG_02796"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96431,111384,74198,107421,107791,111381,118372,111382,107420,100189,111385,107790,107419,105589,111386,79623,111383,105331,99918,111387],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"},{"annotations":[90478],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061613"},{"annotations":[74850,77918],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0045820"},{"annotations":[71770],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0006110"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ADP, adenosine 5'-diphosphate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide catabolic process","termid":"GO:0009154"},{"relation_name":"is_a","term_name":"purine ribonucleoside diphosphate catabolic process","termid":"GO:0009181"},{"relation_name":"is_a","term_name":"ADP metabolic process","termid":"GO:0046031"}],"gene_count":24,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00685":null,"SJAG_00839":null,"SJAG_01310":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02785":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_04048":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_05314":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"ADP catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"ADP breakdown","type":"exact"},{"name":"ADP catabolism","type":"exact"},{"name":"ADP degradation","type":"exact"}],"termid":"GO:0046032","terms_by_termid":{"GO:0006110":null,"GO:0045820":null,"GO:0061613":null,"GO:0061621":null}}


id: PBO:0063130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(ADP-ribose) polymerase family member 15","termid":"PBO:0063130"}


id: MONDO:0008646
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete long QT syndrome 1 (obsolete MONDO:0008646)","termid":"MONDO:0008646","xrefs":{"Monarch":{"xref_id":"0008646"}}}


id: GO:0090031
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of steroid hormones,compounds with a 1, 2, cyclopentanoperhydrophenanthrene nucleus that act as hormones.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of steroid biosynthetic process","termid":"GO:0010893"},{"relation_name":"is_a","term_name":"positive regulation of hormone biosynthetic process","termid":"GO:0046886"},{"relation_name":"is_a","term_name":"regulation of steroid hormone biosynthetic process","termid":"GO:0090030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"positive regulation of steroid hormone biosynthetic process","termid":"GO:0090031"}


id: GO:0033232
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + D-methionine(out/in) = ADP + phosphate + D-methionine(in/out).","definition_xrefs":["GOC:mlg","PMID:12169620","PMID:12819857","RHEA:29767","PMID:18621668"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ABC-type amino acid transporter activity","termid":"GO:0015424"},{"relation_name":"is_a","term_name":"ATPase-coupled carboxylic acid transmembrane transporter activity","termid":"GO:0033284"},{"relation_name":"is_a","term_name":"D-amino acid transmembrane transporter activity","termid":"GO:0042943"},{"relation_name":"is_a","term_name":"methionine transmembrane transporter activity","termid":"GO:0043865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"ABC-type D-methionine transporter activity","secondary_identifiers":["GO:0048474","GO:0032521","GO:1901243","EC:7.4.2.11","MetaCyc:TRANS-RXN0-202","GO:0032522"],"synonyms":[{"name":"ATP-dependent D-methionine transporter activity","type":"related"},{"name":"ATP-dependent methionine transmembrane transporter activity","type":"related"},{"name":"ATPase-coupled D-methionine transporter activity","type":"related"},{"name":"ATPase-coupled methionine transmembrane transporter activity","type":"related"},{"name":"D-methionine exporter","type":"related"},{"name":"D-methionine importer","type":"related"},{"name":"D-methionine transmembrane transporter activity","type":"related"},{"name":"D-methionine transporter activity","type":"related"},{"name":"D-methionine-exporting ATPase activity","type":"related"},{"name":"D-methionine-importing ATPase activity","type":"related"},{"name":"D-methionine-transporting ATPase activity","type":"related"},{"name":"methionine transmembrane-transporting ATPase activity","type":"related"}],"termid":"GO:0033232"}


id: PBO:0068693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 74, pseudogene","termid":"PBO:0068693"}


id: GO:0034148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 5 signaling pathway.","definition_xrefs":["GOC:add","PMID:16551253","PMID:17328678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune system process","termid":"GO:0002683"},{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of toll-like receptor 5 signaling pathway","termid":"GO:0034147"},{"relation_name":"negatively_regulates","term_name":"toll-like receptor 5 signaling pathway","termid":"GO:0034146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of toll-like receptor 5 signaling pathway","synonyms":[{"name":"negative regulation of TLR5 signaling pathway","type":"exact"},{"name":"negative regulation of toll-like receptor 5 signalling pathway","type":"exact"}],"termid":"GO:0034148"}


id: GO:0090028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of pheromone-dependent signal transduction during conjugation with cellular fusion, a signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion","termid":"GO:0010969"},{"relation_name":"is_a","term_name":"positive regulation of signal transduction involved in conjugation with cellular fusion","termid":"GO:0060239"},{"relation_name":"positively_regulates","term_name":"pheromone-dependent signal transduction involved in conjugation with cellular fusion","termid":"GO:0000750"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0000747"},{"rel_name":"regulates","termid":"GO:0000747"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0000747","GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of pheromone-dependent signal transduction involved in conjugation with cellular fusion","termid":"GO:0090028"}


id: MOD:00603
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because Unimod entry 283 is redundant with Unimod 280. Remap to MOD:00600","definition_xrefs":["Unimod:283"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00603 N-ethylation (obsolete MOD:00603)","termid":"MOD:00603"}


id: MONDO:0005679
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute disease of cattle caused by the bovine viral diarrhea viruses (diarrhea viruses, bovine viral). Often mouth ulcerations are the only sign but fever, diarrhea, drop in milk yield, and loss of appetite are also seen. Severity of clinical disease varies and is strain dependent. Outbreaks are characterized by low morbidity and high mortality.","definition_xrefs":["MESH:D001912"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cattle disease","termid":"MONDO:0024913"},{"relation_name":"is_a","term_name":"pestivirus infectious disease, non-human animal","termid":"MONDO:0700203"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bovine virus diarrhea-mucosal disease","secondary_identifiers":["DOID:5115","MESH:D030243"],"synonyms":[{"name":"bovine hemorrhagic syndrome","type":"exact"},{"name":"hemorrhagic syndrome, bovine","type":"exact"}],"termid":"MONDO:0005679","xrefs":{"Monarch":{"xref_id":"0005679"}}}


id: PBO:0078279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Cys (anticodon GCA) 12-1","termid":"PBO:0078279"}


id: MONDO:0019601
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Autosomal recessive form of axonal hereditary motor and sensory neuropathy.","definition_xrefs":["MONDO:patterns/autosomal_recessive"],"gene_count":0,"genotype_count":0,"name":"obsolete autosomal recessive axonal hereditary motor and sensory neuropathy (obsolete MONDO:0019601)","secondary_identifiers":["Orphanet:91024"],"synonyms":[{"name":"AR-CMT2","type":"exact"},{"name":"autosomal recessive axonal Charcot-Marie-Tooth disease type 2","type":"exact"},{"name":"axonal hereditary motor and sensory neuropathy, autosomal recessive","type":"exact"}],"termid":"MONDO:0019601","xrefs":{"Monarch":{"xref_id":"0019601"}}}


id: MONDO:1012195
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"ocular squamous cell carcinoma, non-human animal","termid":"MONDO:1011812"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ocular squamous cell carcinoma, domestic cat","secondary_identifiers":["OMIA:000735-9685"],"termid":"MONDO:1012195","xrefs":{"Monarch":{"xref_id":"1012195"}}}


id: PR:Q9P805
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dcp1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P805"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA-decapping enzyme subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3B9.21","synonyms":[{"name":"Spom972h-dcp1","type":"exact"}],"termid":"PR:Q9P805"}


id: PBO:0004388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FACT complex component Pob3","termid":"PBO:0004388"}


id: PBO:0108959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase allele types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleotide_deletion_and_mutation","termid":"PBO:0108959"}


id: PBO:0041683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colon adenocarcinoma hypermethylated","termid":"PBO:0041683"}


id: GO:0005935
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The constriction between the mother cell and daughter cell (bud) in an organism that reproduces by budding.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"site of polarized growth","termid":"GO:0030427"},{"relation_name":"part_of","term_name":"cellular bud","termid":"GO:0005933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cellular bud neck","termid":"GO:0005935"}


id: GO:0004961
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with thromboxane A2 (TXA(2)) and transmitting the signal across the membrane to activate an associated G-protein.","definition_xrefs":["ISBN:0198506732","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thromboxane receptor activity","termid":"GO:0004960"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"thromboxane A2 receptor activity","synonyms":[{"name":"TXA(2) receptor activity","type":"exact"},{"name":"TXA2 receptor activity","type":"exact"}],"termid":"GO:0004961"}


id: PBO:0028965
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_alpha,alpha-trehalase_activity_during_cellular_response_to_nutrient","termid":"PBO:0028965"}


id: PBO:0077534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 247","termid":"PBO:0077534"}


id: PBO:0070834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13a pseudogene 13","termid":"PBO:0070834"}


id: PBO:0072331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 17","termid":"PBO:0072331"}


id: GO:0060627
data:
  {"annotated_genes":["SJAG_03631","SJAG_04465","SJAG_03268","SJAG_00661","SJAG_00649","SJAG_04666","SJAG_03763","SJAG_02366","SJAG_00845","SJAG_04509","SJAG_04343","SJAG_01373","SJAG_03581","SJAG_01166","SJAG_02419","SJAG_00514","SJAG_03970","SJAG_04052","SJAG_02684","SJAG_03987","SJAG_00402"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96486],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045806"},{"annotations":[89955],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042997"},{"annotations":[105646],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045807"},{"annotations":[102115],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045921"},{"annotations":[113670,120907,113023],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000369"},{"annotations":[89763],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001135"},{"annotations":[94317,115245,104882,91752,92847,94603,115375,80198,79283],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030100"},{"annotations":[78413],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060628"},{"annotations":[100319,61628,89766],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017157"},{"annotations":[115634],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000156"}]},"cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of vesicle-mediated transport, the directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular process","termid":"GO:0050794"},{"relation_name":"is_a","term_name":"regulation of transport","termid":"GO:0051049"},{"relation_name":"regulates","term_name":"vesicle-mediated transport","termid":"GO:0016192"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00402":null,"SJAG_00514":null,"SJAG_00649":null,"SJAG_00661":null,"SJAG_00845":null,"SJAG_01166":null,"SJAG_01373":null,"SJAG_02366":null,"SJAG_02419":null,"SJAG_02684":null,"SJAG_03268":null,"SJAG_03581":null,"SJAG_03631":null,"SJAG_03763":null,"SJAG_03970":null,"SJAG_03987":null,"SJAG_04052":null,"SJAG_04343":null,"SJAG_04465":null,"SJAG_04509":null,"SJAG_04666":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"regulation of vesicle-mediated transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"termid":"GO:0060627","terms_by_termid":{"GO:0017157":null,"GO:0030100":null,"GO:0042997":null,"GO:0045806":null,"GO:0045807":null,"GO:0045921":null,"GO:0060628":null,"GO:2000156":null,"GO:2000369":null,"GO:2001135":null}}


id: GO:0004973
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete N-methyl-D-aspartate receptor-associated protein activity (obsolete GO:0004973)","synonyms":[{"name":"N-methyl-D-aspartate receptor-associated protein activity","type":"exact"}],"termid":"GO:0004973"}


id: PBO:0029176
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_peptide-serine-N-acetyltransferase_activity","termid":"PBO:0029176"}


id: PBO:0087044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L20B; homologous to mammalian ribosomal protein L18A, no bacterial homolog; RPL20B has a paralog, RPL20A, that arose from the whole genome duplication","termid":"PBO:0087044"}


id: GO:0018388
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The condensation of pyruvate through the 2-oxo group with the N-terminal valine of proteins to form the derivative N-pyruvic acid 2-iminyl-L-valine.","definition_xrefs":["RESID:AA0275"],"gene_count":0,"genotype_count":0,"name":"obsolete N-terminal peptidyl-valine condensation with pyruvate to form N-pyruvic acid 2-iminyl-L-valine (obsolete GO:0018388)","termid":"GO:0018388"}


id: PR:Q9P6J9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An inner membrane metabolite transport protein YgcS that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02334","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inorganic phosphate transporter C1683.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1683.01","secondary_identifiers":["UniProtKB:Q9P6J9"],"synonyms":[{"name":"Spom972h-ygcS","type":"exact"}],"termid":"PR:Q9P6J9"}


id: GO:0044083
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont alters a Rho protein family-mediated signal transduction pathway in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:30201700","PMID:15694861","PMID:17689917"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host small GTPase-mediated signal transduction","termid":"GO:0044082"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host Rho small GTPase signal transduction","synonyms":[{"name":"modulation by symbiont of host Rho protein mediated signal transduction","type":"exact"},{"name":"modulation by symbiont of host Rho protein signal transduction","type":"exact"},{"name":"modulation by symbiont of host Rho protein-mediated signal transduction","type":"exact"},{"name":"modulation of host Rho protein signal transduction by symbiont","type":"exact"},{"name":"modulation of host Rho protein signaling by symbiont","type":"exact"},{"name":"modulation of host Rho protein signalling by symbiont","type":"exact"},{"name":"perturbation of host Rho protein signal transduction","type":"exact"},{"name":"regulation by symbiont of host Rho protein signal transduction","type":"exact"},{"name":"symbiont-mediated perturbation of host Rho protein signal transduction","type":"exact"}],"termid":"GO:0044083"}


id: PBO:0031153
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_myo-inositol_import","termid":"PBO:0031153"}


id: GO:0033311
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways leading to the formation of chlorophyll a, via the intermediate phytyl diphosphate.","definition_xrefs":["GOC:mah","MetaCyc:PWY-5086"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chlorophyll a biosynthetic process","termid":"GO:0033305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"chlorophyll a biosynthetic process via phytyl diphosphate","synonyms":[{"name":"chlorophyll a anabolism via phytyl diphosphate","type":"exact"},{"name":"chlorophyll a biosynthesis via phytyl diphosphate","type":"exact"},{"name":"chlorophyll a biosynthetic process via phytyl-PP","type":"exact"},{"name":"chlorophyll a formation via phytyl chlorophyll a formation via phytyl-PP","type":"exact"},{"name":"chlorophyll a synthesis via phytyl diphosphate","type":"exact"}],"termid":"GO:0033311"}


id: MONDO:0017637
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare parkinsonian syndrome due to intoxication (obsolete MONDO:0017637)","secondary_identifiers":["Orphanet:306679"],"termid":"MONDO:0017637","xrefs":{"Monarch":{"xref_id":"0017637"}}}


id: FYPO:0006901
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which a cell shrinks temporarily, but then recovers its original size.","definition_xrefs":["PMID:31116668","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"cell deflation and reinflation","synonyms":[{"name":"cell deflation and reinflation during mitotic cell cycle","type":"related"},{"name":"cell deflation and reinflation during vegetative growth","type":"exact"},{"name":"vegetative cell deflation and reinflation","type":"exact"}],"termid":"FYPO:0006901"}


id: MONDO:0004094
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Multiple meningiomas that affect the skull base.","definition_xrefs":["NCIT:C5279"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skull base meningioma","termid":"MONDO:0002998"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multiple skull base meningioma","secondary_identifiers":["DOID:7054","MEDGEN:233723","UMLS:C1334829"],"synonyms":[{"name":"multiple skull base meningiomas","type":"related"}],"termid":"MONDO:0004094","xrefs":{"Monarch":{"xref_id":"0004094"}}}


id: MONDO:0957268
data:
  {"annotated_genes":["SJAG_02463","SJAG_01941"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88410,88411],"is_not":false,"summary":null,"term":"MONDO:0957268"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01941":null,"SJAG_02463":null},"genotype_count":0,"is_obsolete":false,"name":"hypersulfaturia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1841147","OMIM:620372","UMLS:C5830511"],"termid":"MONDO:0957268","terms_by_termid":{"MONDO:0957268":null},"xrefs":{"Monarch":{"xref_id":"0957268"}}}


id: PBO:0005767
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5.4.99.-","termid":"PBO:0005767"}


id: GO:0046406
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: Mg-protoporphyrin IX + S-adenosyl-L-methionine = Mg-protoporphyrin IX 13-monomethyl ester + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:17809"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"magnesium protoporphyrin IX methyltransferase activity","secondary_identifiers":["EC:2.1.1.11","MetaCyc:RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN","KEGG_REACTION:R04237"],"synonyms":[{"name":"(-)-S-adenosyl-L-methionine:magnesium-protoporphyrin IX methyltransferase activity","type":"related"},{"name":"Mg-protoporphyrin IX methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:Mg protoporphyrin methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:magnesium-protoporphyrin O-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:magnesium-protoporphyrin-IX O-methyltransferase activity","type":"related"},{"name":"S-adenosylmethionine-magnesium protoporphyrin methyltransferase activity","type":"related"},{"name":"S-adenosylmethioninemagnesium protoporphyrin methyltransferase activity","type":"related"},{"name":"magnesium-protoporphyrin O-methyltransferase activity","type":"exact"}],"termid":"GO:0046406"}


id: GO:0046105
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of thymidine, deoxyribosylthymine thymine 2-deoxyriboside, a deoxynucleoside very widely distributed but occurring almost entirely as phosphoric esters in deoxynucleotides and deoxyribonucleic acid, DNA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thymidine metabolic process","termid":"GO:0046104"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside biosynthetic process","termid":"GO:0046126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"thymidine biosynthetic process","synonyms":[{"name":"deoxyribosylthymine biosynthesis","type":"exact"},{"name":"deoxyribosylthymine biosynthetic process","type":"exact"},{"name":"thymidine anabolism","type":"exact"},{"name":"thymidine biosynthesis","type":"exact"},{"name":"thymidine formation","type":"exact"},{"name":"thymidine synthesis","type":"exact"}],"termid":"GO:0046105"}


id: PBO:0054954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2368","termid":"PBO:0054954"}


id: PBO:0044972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DExH-box helicase 9","termid":"PBO:0044972"}


id: MONDO:0016323
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary pulmonary alveolar proteinosis","termid":"MONDO:0012580"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chronic respiratory distress with surfactant metabolism deficiency","secondary_identifiers":["Orphanet:217566","GARD:17127","MEDGEN:1679491","UMLS:C5190853"],"termid":"MONDO:0016323","xrefs":{"Monarch":{"xref_id":"0016323"}}}


id: PBO:0073712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SKI family transcriptional corepressor 2","termid":"PBO:0073712"}


id: PBO:0045058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"discs large MAGUK scaffold protein 1","termid":"PBO:0045058"}


id: SO:0000634
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An mRNA that encodes multiple proteins from at least two non-overlapping regions.","definition_xrefs":["SO:rd"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"polycistronic","termid":"SO:0000880"},{"relation_name":"is_a","term_name":"polycistronic_transcript","termid":"SO:0000078"},{"relation_name":"is_a","term_name":"mRNA","termid":"SO:0000234"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycistronic_mRNA","secondary_identifiers":["http://en.wikipedia.org/wiki/Polycistronic_mRNA"],"synonyms":[{"name":"polycistronic mRNA","type":"exact"},{"name":"polycistronic processed transcript","type":"related"}],"termid":"SO:0000634"}


id: GO:0002719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of cytokine production contributing to an immune response.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"negative regulation of production of molecular mediator of immune response","termid":"GO:0002701"},{"relation_name":"is_a","term_name":"regulation of cytokine production involved in immune response","termid":"GO:0002718"},{"relation_name":"negatively_regulates","term_name":"cytokine production involved in immune response","termid":"GO:0002367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of cytokine production involved in immune response","secondary_identifiers":["GO:0002740","GO:0002743"],"synonyms":[{"name":"down regulation of cytokine production during immune response","type":"related"},{"name":"down-regulation of cytokine production during immune response","type":"exact"},{"name":"downregulation of cytokine production during immune response","type":"related"},{"name":"inhibition of cytokine production during immune response","type":"related"},{"name":"negative regulation of cytokine biosynthetic process involved in immune response","type":"narrow"},{"name":"negative regulation of cytokine production during immune response","type":"related"},{"name":"negative regulation of cytokine secretion involved in immune response","type":"narrow"}],"termid":"GO:0002719"}


id: GO:0035502
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The development of the portion of the ureteric bud tube that contributes to the morphogenesis of the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube development","termid":"GO:0035295"},{"relation_name":"part_of","term_name":"ureteric bud development","termid":"GO:0001657"},{"relation_name":"part_of","term_name":"metanephros morphogenesis","termid":"GO:0003338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric part of ureteric bud development","termid":"GO:0035502"}


id: PR:Q9C108
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAPB1E7.01c gene.","definition_xrefs":["UniProtKB:Q9C108","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein PB1E7.01c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB1E7.01c","synonyms":[{"name":"Spom972h-SPAPB1E7.01c","type":"exact"}],"termid":"PR:Q9C108"}


id: PBO:0064307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"procollagen-lysine,2-oxoglutarate 5-dioxygenase 2","termid":"PBO:0064307"}


id: MONDO:1011549
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Junctionalis epidermolysis bullosa that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"junctionalis epidermolysis bullosa , non-human animal","termid":"MONDO:1011426"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"junctionalis epidermolysis bullosa, domestic cat","secondary_identifiers":["OMIA:000342-9685"],"termid":"MONDO:1011549","xrefs":{"Monarch":{"xref_id":"1011549"}}}


id: GO:0035979
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: histone H2AX-serine (position 139) + ATP = histone H2AX-phosphoserine (position 139) + ADP. This reaction is the addition of a phosphate group to the serine residue at position 139 of histone variant H2AX.","definition_xrefs":["PMID:11893489","PMID:16061642","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"},{"relation_name":"is_a","term_name":"histone H2AX kinase activity","termid":"GO:0141003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0004672"}],"interesting_parent_ids":["GO:0003824","GO:0004672","GO:0016740","GO:0003674","GO:0016301","GO:0140096"],"is_obsolete":false,"name":"histone H2AXS139 kinase activity","synonyms":[{"name":"histone H2AS139 kinase activity","type":"related"},{"name":"histone kinase activity (H2A-S139 specific)","type":"related"},{"name":"histone kinase activity (H2A.x-S139 specific)","type":"narrow"}],"termid":"GO:0035979"}


id: PR:O60067
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC13G1.05 gene.","definition_xrefs":["UniProtKB:O60067","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum membrane protein 65 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC13G1.05","synonyms":[{"name":"Spom972h-SPBC13G1.05","type":"exact"}],"termid":"PR:O60067"}


id: GO:0005552
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete polyubiquitin (obsolete GO:0005552)","synonyms":[{"name":"polyubiquitin","type":"exact"}],"termid":"GO:0005552"}


id: GO:0043259
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A laminin complex composed of alpha5, beta1 and gamma1 polypeptide chains.","definition_xrefs":["GOC:jl","PMID:10842354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laminin complex","termid":"GO:0043256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"laminin-10 complex","synonyms":[{"name":"laminin-511 complex","type":"exact"}],"termid":"GO:0043259"}


id: GO:0006049
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-N-acetylglucosamine metabolic process","termid":"GO:0006047"},{"relation_name":"is_a","term_name":"nucleotide-sugar catabolic process","termid":"GO:0009227"},{"relation_name":"is_a","term_name":"amino sugar catabolic process","termid":"GO:0046348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"UDP-N-acetylglucosamine catabolic process","synonyms":[{"name":"UDP-N-acetylglucosamine breakdown","type":"exact"},{"name":"UDP-N-acetylglucosamine catabolism","type":"exact"},{"name":"UDP-N-acetylglucosamine degradation","type":"exact"}],"termid":"GO:0006049"}


id: PBO:0048082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin light chain pseudogene 3","termid":"PBO:0048082"}


id: MONDO:0001122
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the maxillary sinus that typically lasts beyond eight weeks. It is caused by infections, allergies, and the presence of sinus polyps or a deviated septum. Signs and symptoms include headache, nasal discharge, swelling in the face, dizziness, and breathing difficulties.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maxillary sinusitis","termid":"MONDO:0005842"},{"relation_name":"is_a","term_name":"chronic rhinosinusitis","termid":"MONDO:0006031"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chronic maxillary sinusitis","secondary_identifiers":["DOID:10792","ICD9:473.0","icd11.foundation:1372580647","MEDGEN:966","SCTID:35923002","NCIT:C34477","UMLS:C0008698","ICD10CM:J32.0"],"synonyms":[{"name":"chronic antritis","type":"exact"},{"name":"maxillary sinusitis, chronic","type":"exact"}],"termid":"MONDO:0001122","xrefs":{"Monarch":{"xref_id":"0001122"}}}


id: GO:1903715
data:
  {"annotated_genes":["SJAG_00698","SJAG_01062","SJAG_02592","SJAG_02433"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96273,99550,111682,113883],"is_not":false,"summary":null,"term":"GO:1903715"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of aerobic respiration.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:19266076"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular respiration","termid":"GO:0043457"},{"relation_name":"regulates","term_name":"aerobic respiration","termid":"GO:0009060"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00698":null,"SJAG_01062":null,"SJAG_02433":null,"SJAG_02592":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"regulation of aerobic respiration","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1903715","terms_by_termid":{"GO:1903715":null}}


id: PBO:0044907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deuterosome assembly protein 1","termid":"PBO:0044907"}


id: SO:0000367
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region within an integron, adjacent to an integrase, at which site specific recombination involving an attC_site takes place.","definition_xrefs":["SO:as"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integration_excision_site","termid":"SO:0000946"},{"relation_name":"part_of","term_name":"integron","termid":"SO:0000365"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"attI_site","synonyms":[{"name":"attI site","type":"exact"}],"termid":"SO:0000367"}


id: PBO:0039415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angiogenin","termid":"PBO:0039415"}


id: PBO:0059703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO2 pseudogene 11","termid":"PBO:0059703"}


id: GO:0042655
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The initiation of the activity of the inactive enzyme JUN kinase kinase kinase (JNKKK) activity.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of JNKKK activity (obsolete GO:0042655)","synonyms":[{"name":"activation of JUN kinase kinase kinase activity","type":"exact"},{"name":"positive regulation of JUNKKK activity","type":"broad"}],"termid":"GO:0042655"}


id: GO:0102660
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: caffeoylshikimate + coenzyme A = caffeoyl-CoA + shikimate.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete caffeoyl-CoA:shikimate O-(hydroxycinnamoyl)transferase activity (obsolete GO:0102660)","termid":"GO:0102660"}


id: PBO:0030371
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_RNA_level_during_cellular_response_to_hydrogen_peroxide","termid":"PBO:0030371"}


id: FYPO:0005315
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of negative regulation of transcription at the central core of the centromeric regions is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin silencing at centromere central core","termid":"FYPO:0000640"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased chromatin silencing at centromere central core","synonyms":[{"name":"increased chromatin silencing at centromere central core during mitotic cell cycle","type":"related"},{"name":"increased chromatin silencing at centromere central core during vegetative growth","type":"exact"},{"name":"increased negative regulation of transcription at centromere central core","type":"related"},{"name":"increased transcriptional repression at centromere central core","type":"related"}],"termid":"FYPO:0005315"}


id: GO:0060621
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of cholesterol import. Cholesterol import is the directed movement of cholesterol into a cell or organelle.","definition_xrefs":["GOC:dph","GOC:BHF","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cholesterol transport","termid":"GO:0032375"},{"relation_name":"is_a","term_name":"regulation of cholesterol import","termid":"GO:0060620"},{"relation_name":"negatively_regulates","term_name":"cholesterol import","termid":"GO:0070508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of cholesterol import","termid":"GO:0060621"}


id: PBO:0049126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor class C group 5 member C","termid":"PBO:0049126"}


id: GO:0009334
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Enzyme complex consisting of four proteins: the two subunits of the hydroxylase component (hcaE and hcaF), a ferredoxin (hcaC) and a ferredoxin reductase (hcaD). Converts 3-phenylpropionic acid (PP) into cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol).","definition_xrefs":["MetaCyc:HCAMULTI-CPLX","PMID:9603882","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"3-phenylpropionate dioxygenase complex","termid":"GO:0009334"}


id: PATO:0002051
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An occurrence which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"occurrence","termid":"PATO:0000057"},{"relation_name":"is_a","term_name":"increased process quality","termid":"PATO:0002304"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased occurrence","synonyms":[{"name":"increased incidence","type":"exact"}],"termid":"PATO:0002051"}


id: GO:1902310
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of peptidyl-serine dephosphorylation.","definition_xrefs":["PMID:11953308","GOC:rl","GOC:BHF","GOC:mtg_cardiac_conduct_nov11","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of peptidyl-serine dephosphorylation (obsolete GO:1902310)","synonyms":[{"name":"activation of peptidyl-serine dephosphorylation","type":"narrow"},{"name":"up regulation of peptidyl-serine dephosphorylation","type":"exact"},{"name":"up-regulation of peptidyl-serine dephosphorylation","type":"exact"},{"name":"upregulation of peptidyl-serine dephosphorylation","type":"exact"}],"termid":"GO:1902310"}


id: PBO:0041943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromobox 4","termid":"PBO:0041943"}


id: PBO:0003592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar sorting protein Vps68 (predicted)","termid":"PBO:0003592"}


id: GO:0075324
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of oomycete sporangium development, a process that leads to the formation of oomycete sporangium, a single-celled or many-celled structure that germinates directly to form an infection hypha or differentiate, through specialized cleavage vesicles, into between 10 and 30 zoospores, which is laterally flagellated.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of sporulation","termid":"GO:0043939"},{"relation_name":"is_a","term_name":"negative regulation of sporangium development","termid":"GO:0075312"},{"relation_name":"is_a","term_name":"regulation of oomycete sporangium development","termid":"GO:0075322"},{"relation_name":"is_a","term_name":"negative regulation of asexual reproduction","termid":"GO:1903665"},{"relation_name":"negatively_regulates","term_name":"oomycete sporangium development","termid":"GO:0075321"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of oomycete sporangium development","termid":"GO:0075324"}


id: MONDO:0800486
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of disorders that affect the bones secondary to increased levels of minerals or deficient levels of minerals such as calcium, magnesium, phosphorus, and vitamin D. Representative examples are osteomalacia, osteoporosis, and Paget disease.","definition_xrefs":["NCIT:C97045"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone disorder","termid":"MONDO:0005381"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metabolic bone disorder","secondary_identifiers":["UMLS:C0005944","MEDGEN:2699"],"termid":"MONDO:0800486","xrefs":{"Monarch":{"xref_id":"0800486"}}}


id: GO:0036430
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + CMP = ADP + CDP.","definition_xrefs":["RHEA:11600"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate kinase activity","termid":"GO:0050145"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016301"],"is_obsolete":false,"name":"CMP kinase activity","secondary_identifiers":["KEGG_REACTION:R00512","MetaCyc:RXN-11832"],"termid":"GO:0036430"}


id: GO:0072326
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a nematode vulval cell regardless of its environment; upon determination, the cell fate cannot be reversed. In nematodes, the vulva is formed from ventral epidermal cells during larval stages to give rise to a fully formed adult vulva, which is the egg-laying organ of female and hermaphrodite nematodes.","definition_xrefs":["GOC:mah","ISBN:087969307X","PMID:11236714","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate determination","termid":"GO:0001709"},{"relation_name":"part_of","term_name":"vulval cell fate commitment","termid":"GO:0072325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vulval cell fate determination","termid":"GO:0072326"}


id: GO:0075141
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that contributes to the maintenance of a physiologic state in which the symbiont immune system does not react destructively against the components of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete symbiont tolerance to host environment (obsolete GO:0075141)","synonyms":[{"name":"maintenance of symbiont tolerance to host environment","type":"related"},{"name":"maintenance of symbiont tolerance to host iron concentration","type":"narrow"},{"name":"maintenance of symbiont tolerance to host osmotic environment","type":"narrow"},{"name":"maintenance of symbiont tolerance to host oxygen tension environment","type":"narrow"},{"name":"maintenance of symbiont tolerance to host pH environment","type":"narrow"},{"name":"maintenance of symbiont tolerance to host redox environment","type":"narrow"}],"termid":"GO:0075141"}


id: MONDO:0013901
data:
  {"annotated_genes":["SJAG_00663"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89078],"is_not":false,"summary":null,"term":"MONDO:0013901"}]},"cv_name":"mondo","definition":"Any azoospermia in which the cause of the disease is a mutation in the SEPT12 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00663":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 10","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:18401","OMIM:614822","UMLS:C3553793","MEDGEN:766707","DOID:0070178"],"synonyms":[{"name":"SEPT12 azoospermia","type":"exact"},{"name":"SPGF10","type":"related"},{"name":"azoospermia caused by mutation in SEPT12","type":"exact"},{"name":"spermatogenic failure 10","type":"exact"},{"name":"spermatogenic failure type 10","type":"exact"},{"name":"spermatogenic failure with defective sperm annulus","type":"related"}],"termid":"MONDO:0013901","terms_by_termid":{"MONDO:0013901":null},"xrefs":{"Monarch":{"xref_id":"0013901"}}}


id: PBO:0052881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 9-3","termid":"PBO:0052881"}


id: MONDO:0019978
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Robinow syndrome (RS) is a rare genetic syndrome characterized by limb shortening and abnormalities of the head, face and external genitalia.","definition_xrefs":["Orphanet:97360"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Robinow syndrome","secondary_identifiers":["DOID:0060254","MEDGEN:78535","UMLS:C0265205","GARD:312","OMIMPS:268310","icd11.foundation:1010745722","NCIT:C85048","NORD:1673"],"synonyms":[{"name":"Covesdem syndrome (formerly)","type":"related"},{"name":"Robinow dwarfism","type":"exact"},{"name":"Robinow-Silverman-Smith syndrome","type":"exact"},{"name":"acral dysostosis with facial and genital abnormalities","type":"exact"},{"name":"costovertebral segmentation defect with mesomelia (formerly)","type":"related"},{"name":"fetal face syndrome","type":"exact"},{"name":"foetal face syndrome","type":"exact"},{"name":"mesomelic dwarfism-small genitalia syndrome","type":"exact"}],"termid":"MONDO:0019978","xrefs":{"Monarch":{"xref_id":"0019978"}}}


id: MONDO:0019954
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pancreatic endocrine tumor, also known as pancreatic neuroendocrine tumor (PNET), describes a group of endocrine tumors originating in the pancreas that are usually indolent and benign, but may have the potential to be malignant. They can be functional, exhibiting a hormonal hypersecretion syndrome, but can be non-functional presenting with non-specific symptoms and include insulinoma, glucagonoma, VIPoma, somatostatinoma (SSoma), PPoma and Zollinger-Ellison syndrome (ZES, or gastrinoma) and other ectopic hormone producing tumors (such as GRFoma).","definition_xrefs":["Orphanet:97253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"digestive system neuroendocrine tumor, grade 1/2","termid":"MONDO:0000386"},{"relation_name":"is_a","term_name":"pancreatic neuroendocrine neoplasm","termid":"MONDO:0005815"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"pancreatic neuroendocrine tumor","secondary_identifiers":["ICDO:8150/1","MEDGEN:277875","ONCOTREE:PANET","UMLS:C1337011","NCIT:C27720","EFO:1000045","GARD:13034"],"synonyms":[{"name":"PANET","type":"related"},{"name":"islet cell tumor","type":"exact"},{"name":"islet cell tumors - pancreas","type":"exact"},{"name":"islet cell tumors of the pancreas","type":"exact"},{"name":"islet cell tumour","type":"exact"},{"name":"islet cell tumours - pancreas","type":"exact"},{"name":"islet cell tumours of the pancreas","type":"exact"},{"name":"neuroendocrine tumor of pancreas","type":"related"},{"name":"neuroendocrine tumour of pancreas","type":"related"},{"name":"pancreatic NET","type":"exact"},{"name":"pancreatic endocrine tumor","type":"related"},{"name":"pancreatic endocrine tumour","type":"related"},{"name":"pancreatic neuroendocrine tumor","type":"exact"},{"name":"well differentiated pancreatic endocrine neoplasm","type":"exact"},{"name":"well differentiated pancreatic endocrine tumor","type":"exact"},{"name":"well differentiated pancreatic endocrine tumour","type":"exact"},{"name":"well-differentiated NEN of pancreas","type":"exact"},{"name":"well-differentiated neuroendocrine neoplasm of pancreas","type":"exact"},{"name":"well-differentiated pancreatic NEN","type":"exact"},{"name":"well-differentiated pancreatic neuroendocrine neoplasm","type":"exact"}],"termid":"MONDO:0019954","xrefs":{"Monarch":{"xref_id":"0019954"}}}


id: PBO:0039762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"APRG1 tumor suppressor candidate","termid":"PBO:0039762"}


id: PBO:0038335
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-activity_directly_regulates_activity_of","termid":"PBO:0038335"}


id: MONDO:0008700
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acheiropodia is an extremely rare developmental disorder characterized by bilateral, congenital and complete amputation of the distal extremities (amputation of distal epiphysis of the humerus, distal portion of the tibial diaphysis, aplasia of the radius, ulna, fibula) and aplasia of hands and feet (aplasia of carpal, metacarpal, tarsal, metatarsal and phalangeal bones). Rarely, an ectopic bone can be found at the distal end of the humerus. No other systemic manifestations have been reported and the disorder follows an autosomal recessive pattern of inheritance.","definition_xrefs":["Orphanet:931"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteochondrodysplasia","termid":"MONDO:0005516"},{"relation_name":"is_a","term_name":"non-syndromic limb reduction defect","termid":"MONDO:0019713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"acheiropody","secondary_identifiers":["MESH:C536014","GARD:376","OMIM:200500","SCTID:177504007","MEDGEN:120547","UMLS:C0265559","DOID:0050603"],"synonyms":[{"name":"ACHP","type":"related"},{"name":"acheiropodia","type":"exact"},{"name":"acheiropody","type":"exact"},{"name":"acheiropody, Brazilian type","type":"related"},{"name":"horn-Kolb syndrome","type":"exact"}],"termid":"MONDO:0008700","xrefs":{"Monarch":{"xref_id":"0008700"}}}


id: PR:O60118
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 39S ribosomal protein L13, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04037","PANTHER:PTHR11545:SF2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L13-like mitochondrial ribosomal protein Mrpl23 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16G5.04","secondary_identifiers":["UniProtKB:O60118"],"synonyms":[{"name":"54S ribosomal protein L23, mitochondrial (Schizosaccharomyces pombe 972h-)","type":"related"},{"name":"SPBC16G5.04","type":"related"},{"name":"Spom972h-MRPL13","type":"exact"}],"termid":"PR:O60118"}


id: PATO:0002301
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality that has a value that is decreased compared to normal or average.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"deviation(from_normal)","termid":"PATO:0000069"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased quality","termid":"PATO:0002301"}


id: GO:0004585
data:
  {"annotated_genes":["SJAG_00635"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[80275],"is_not":false,"summary":null,"term":"GO:0004585"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: carbamoyl phosphate + L-ornithine = phosphate + L-citrulline.","definition_xrefs":["EC:2.1.3.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxyl- or carbamoyltransferase activity","termid":"GO:0016743"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00635":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"ornithine carbamoyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:ORNCARBAMTRANSFER-RXN","RHEA:19513","Reactome:R-HSA-70560"],"synonyms":[{"name":"L-ornithine carbamoyltransferase activity","type":"related"},{"name":"L-ornithine carbamyltransferase activity","type":"related"},{"name":"L-ornithine transcarbamylase activity","type":"related"},{"name":"OTC activity","type":"related"},{"name":"OTCase activity","type":"related"},{"name":"carbamoyl-phosphate:L-ornithine carbamoyltransferase activity","type":"related"},{"name":"carbamylphosphate-ornithine transcarbamylase activity","type":"related"},{"name":"citrulline phosphorylase activity","type":"related"},{"name":"ornithine carbamyltransferase activity","type":"related"},{"name":"ornithine transcarbamylase activity","type":"related"}],"termid":"GO:0004585","terms_by_termid":{"GO:0004585":null}}


id: PR:Q09697
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A SLIT-ROBO Rho GTPase-activating protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00225"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rho-GTPase-activating protein 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13A11.01c","secondary_identifiers":["UniProtKB:Q09697"],"synonyms":[{"name":"Spom972h-SRGAP1","type":"exact"}],"termid":"PR:Q09697"}


id: FYPO:0002606
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H2A phosphorylation occurs to a greater extent than normal at ribosomal DNA during S phase of the mitotic cell cycle. All histone H2A phosphorylation may be affected, or phosphorylation of specific sites on histone H2A may be increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H2A phosphorylation at rDNA during vegetative growth","termid":"FYPO:0002604"},{"relation_name":"is_a","term_name":"increased protein phosphorylation during mitotic S phase","termid":"FYPO:0004353"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002274","FYPO:0005447","FYPO:0000002","FYPO:0002494","FYPO:0001320"],"is_obsolete":false,"name":"increased histone H2A phosphorylation at rDNA during mitotic S phase","synonyms":[{"name":"increased histone H2A phosphorylation at rDNA during mitotic S phase during vegetative growth","type":"exact"},{"name":"increased histone H2A phosphorylation at ribosomal DNA during mitotic S phase","type":"exact"}],"termid":"FYPO:0002606"}


id: GO:0036154
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Remodeling the acyl chains of diacylglycerol, through sequential deacylation and re-acylation reactions, to generate diacylglycerol containing different types of fatty acid acyl chains.","definition_xrefs":["GOC:mw","PMID:15364929"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylglycerol acyl-chain remodeling","termid":"GO:0036155"},{"relation_name":"is_a","term_name":"diacylglycerol metabolic process","termid":"GO:0046339"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"diacylglycerol acyl-chain remodeling","synonyms":[{"name":"diacylglycerol acyl-chain remodelling","type":"exact"},{"name":"diglyceride acyl-chain remodeling","type":"exact"}],"termid":"GO:0036154"}


id: PBO:0039472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 18B","termid":"PBO:0039472"}


id: PBO:0091327
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"not functionally complemented by S. cerevisiae CMD1","termid":"PBO:0091327"}


id: PBO:0039610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANTXR like","termid":"PBO:0039610"}


id: GO:0030901
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles).","definition_xrefs":["PMID:4975589","PMID:4992177"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"brain development","termid":"GO:0007420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"midbrain development","synonyms":[{"name":"mesencephalon development","type":"exact"}],"termid":"GO:0030901"}


id: GO:0060682
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the primary ureteric bud grows along its axis dorsally toward the metanephric blastema.","definition_xrefs":["GOC:dph","PMID:16916378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental growth involved in morphogenesis","termid":"GO:0060560"},{"relation_name":"part_of","term_name":"ureteric bud elongation","termid":"GO:0060677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"primary ureteric bud growth","termid":"GO:0060682"}


id: FYPO:0007114
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the amount, distribution, and morphology of microtubule bundles are normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component","termid":"FYPO:0001233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal microtubule bundle","synonyms":[{"name":"normal MT bundle","type":"exact"},{"name":"normal microtubule array","type":"related"},{"name":"normal microtubule bundle physical object quality","type":"exact"}],"termid":"FYPO:0007114"}


id: POMBASE_GENE_EX_REL:in_absence_of
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"a substance is absent","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_absence_of","termid":"POMBASE_GENE_EX_REL:in_absence_of"}


id: PBO:0038662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA synthetase bubblegum family member 1","termid":"PBO:0038662"}


id: FYECO:0000433
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in rich medium containing mannitol as the carbon source, yeast extract and other components. The concentration of mannitol is typically around 2%.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping rich medium","termid":"FYECO:0000080"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannitol YE","synonyms":[{"name":"mannitol rich medium","type":"broad"}],"termid":"FYECO:0000433"}


id: MONDO:0010444
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital dyserythropoietic anemia","termid":"MONDO:0019403"},{"relation_name":"is_a","term_name":"GATA1-Related X-Linked Cytopenia","termid":"MONDO:0100089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570"],"is_obsolete":false,"name":"X-linked dyserythropoetic anemia with abnormal platelets and neutropenia","secondary_identifiers":["UMLS:C3550856","Orphanet:363727","OMIM:300835","GARD:17574","DOID:0112156","MEDGEN:763770"],"synonyms":[{"name":"XLANP","type":"related"},{"name":"anemia, X-linked, with or without neutropenia and/or platelet abnormalities","type":"related"},{"name":"anemia, X-linked, with/without neutropenia and/or platelet abnormalities, X-linked recessive","type":"exact"}],"termid":"MONDO:0010444","xrefs":{"Monarch":{"xref_id":"0010444"}}}


id: PBO:0051668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inactivation escape 2","termid":"PBO:0051668"}


id: GO:0006714
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving sesquiterpenoid compounds, terpenoids with three isoprene units.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpenoid metabolic process","termid":"GO:0006721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"sesquiterpenoid metabolic process","synonyms":[{"name":"sesquiterpenoid metabolism","type":"exact"}],"termid":"GO:0006714"}


id: GO:0035268
data:
  {"annotated_genes":["SJAG_01264","SJAG_04053","SJAG_04316"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94928,107935,103488],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035269"}]},"cv_name":"biological_process","definition":"The addition of a mannose residue to a protein acceptor molecule.","definition_xrefs":["GOC:bf","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein glycosylation","termid":"GO:0006486"},{"relation_name":"is_a","term_name":"mannosylation","termid":"GO:0097502"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01264":null,"SJAG_04053":null,"SJAG_04316":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006486"}],"interesting_parent_ids":["GO:0006486","GO:0008150"],"is_obsolete":false,"name":"protein mannosylation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"protein amino acid mannosylation","type":"exact"}],"termid":"GO:0035268","terms_by_termid":{"GO:0035269":null}}


id: PATO:0001347
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A bacterial mating type indicating the presence of F plasmid in a bacterial cell.","definition_xrefs":["MGED:MGED"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial mating type","termid":"PATO:0001335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F mating type","termid":"PATO:0001347"}


id: PBO:0074111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 29 member 3","termid":"PBO:0074111"}


id: MONDO:0018082
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Aorto-ventricular tunnel is a congenital, extracardiac channel which connects the ascending aorta above the sinotubular junction to the cavity of the left, or (less commonly) right ventricle.","definition_xrefs":["Orphanet:3400"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital anomaly of the great arteries","termid":"MONDO:0020292"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aorto-ventricular tunnel","secondary_identifiers":["GARD:18798","MEDGEN:868852","HP:0011627","UMLS:C4023262","MESH:D000082903"],"synonyms":[{"name":"aorto-ventricular tunnel","type":"exact"},{"name":"aorto-ventricular tunnel (disease)","type":"exact"}],"termid":"MONDO:0018082","xrefs":{"Monarch":{"xref_id":"0018082"}}}


id: GO:0032160
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Arrays of septin filaments, or bars, found in a series of filamentous structures. Such structures have been observed in the prospore membrane during spore formation in S. cerevisiae and in the chlamydospore membrane during chlamydospore formation in C. albicans.","definition_xrefs":["PMID:16151244","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"septin cytoskeleton","termid":"GO:0032156"},{"relation_name":"part_of","term_name":"cytoskeleton","termid":"GO:0005856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"septin filament array","synonyms":[{"name":"septin bar","type":"related"}],"termid":"GO:0032160"}


id: PBO:0024810
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-causally_influenced_by","termid":"PBO:0024810"}


id: PBO:0080216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VIM antisense RNA 1","termid":"PBO:0080216"}


id: PBO:0063156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paired box 2","termid":"PBO:0063156"}


id: FYPO:0006807
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the glycan moiety of a glycoprotein found at the cell surface contains a lower amount of galactose residues than normal. In wild-type cells, glycoprotein glycans contain mannose and galactose residues in a 1:1.2 ratio, and the galactose residues are connected by alpha-1,2 linkages.","definition_xrefs":["PomBase:mah","PMID:9839953"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased galactose level in glycoprotein glycan","termid":"FYPO:0003354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0003290"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0002274"},{"rel_name":"output_of","termid":"FYPO:0002494"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0003290","FYPO:0001320","FYPO:0005447","FYPO:0002494","FYPO:0002274","FYPO:0001985"],"is_obsolete":false,"name":"decreased galactose level in cell surface glycoprotein glycan","synonyms":[{"name":"decreased cell surface protein glycan galactosylation","type":"related"},{"name":"decreased galactose level in cell surface glycoprotein oligosaccharide","type":"related"},{"name":"decreased galactose level in glycoprotein glycan at cell surface","type":"exact"},{"name":"decreased level of alpha 1,2-linked galactose residues in cell surface glycoprotein glycan","type":"exact"},{"name":"reduced galactose level in cell surface glycoprotein glycan","type":"exact"}],"termid":"FYPO:0006807"}


id: PBO:0089551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S27","termid":"PBO:0089551"}


id: GO:0061960
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, or rate of heme oxygenase activity.","definition_xrefs":["GOC:BHF_miRNA","PMID:24844779","GOC:rph","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of heme oxygenase activity (obsolete GO:0061960)","termid":"GO:0061960"}


id: PBO:0111758
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAK-related kinase family","termid":"PBO:0111758"}


id: GO:0004458
data:
  {"annotated_genes":["SJAG_03804"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[82199],"is_not":false,"summary":null,"term":"GO:0004458"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-lactate + 2 [Fe(III)cytochrome c] = 2 [Fe(II)cytochrome c] + 2 H+ + pyruvate.","definition_xrefs":["RHEA:13521"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor","termid":"GO:0016898"},{"relation_name":"is_a","term_name":"D-lactate dehydrogenase activity","termid":"GO:0047809"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03804":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"D-lactate dehydrogenase (cytochrome) activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["EC:1.1.2.4","MetaCyc:D-LACTATE-DEHYDROGENASE-CYTOCHROME-RXN"],"synonyms":[{"name":"(R)-lactate:ferricytochrome-c 2-oxidoreductase activity","type":"exact"},{"name":"D-(-)-lactic cytochrome c reductase activity","type":"related"},{"name":"D-lactate (cytochrome) dehydrogenase activity","type":"related"},{"name":"D-lactate dehydrogenase activity","type":"broad"},{"name":"D-lactate ferricytochrome c oxidoreductase activity","type":"related"},{"name":"D-lactate-cytochrome c reductase activity","type":"related"},{"name":"cytochrome-dependent D-(-)-lactate dehydrogenase activity","type":"related"},{"name":"lactic acid dehydrogenase activity","type":"broad"}],"termid":"GO:0004458","terms_by_termid":{"GO:0004458":null}}


id: MONDO:0019307
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Generalized non-Herlitz-type junctional epidermolysis bullosa is a form of non-Herlitz-type junctional epidermolysis bullosa (JEB-nH) characterized by generalized skin blistering, atrophic scarring, nail dystrophy or nail absence, and enamel hypoplasia, with extracutaneous involvement.","definition_xrefs":["Orphanet:79402"],"direct_ancestors":[{"relation_name":"is_a","term_name":"junctional epidermolysis bullosa, non-Herlitz type","termid":"MONDO:0009180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"generalized junctional epidermolysis bullosa non-Herlitz type","secondary_identifiers":["DOID:0060738","SCTID:724225008","GARD:12922","UMLS:C0432326","MEDGEN:609458"],"synonyms":[{"name":"GABEB","type":"exact"},{"name":"JEB, generalised intermediate","type":"exact"},{"name":"JEB, generalized intermediate","type":"exact"},{"name":"JEB-nH gen","type":"exact"},{"name":"generalised atrophic benign epidermolysis bullosa","type":"exact"},{"name":"generalised junctional epidermolysis bullosa, non-Herlitz type","type":"exact"},{"name":"generalized atrophic benign epidermolysis bullosa","type":"exact"},{"name":"generalized junctional epidermolysis bullosa, non-Herlitz type","type":"exact"},{"name":"junctional epidermolysis bullosa generalisata mitis","type":"exact"},{"name":"junctional epidermolysis bullosa non-Herlitz type","type":"related"},{"name":"junctional epidermolysis bullosa, Disentis type","type":"exact"},{"name":"junctional epidermolysis bullosa, generalised intermediate","type":"related"},{"name":"junctional epidermolysis bullosa, generalized intermediate","type":"related"}],"termid":"MONDO:0019307","xrefs":{"Monarch":{"xref_id":"0019307"}}}


id: PBO:0038811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase domain 18","termid":"PBO:0038811"}


id: FYPO:0002148
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell of abnormal morphology (i.e. size, shape, or structure) that undergoes two or more rounds of cell division, and then dies.","definition_xrefs":["PomBase:mah","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable vegetative cell with abnormal cell morphology","termid":"FYPO:0002273"},{"relation_name":"is_a","term_name":"inviable after spore germination, multiple cell divisions","termid":"FYPO:0002430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000005"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions, abnormal morphology","synonyms":[{"name":"inviable following spore germination, multiple cell divisions, abnormal morphology","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions, abnormal morphology","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions, abnormal morphology","type":"exact"}],"termid":"FYPO:0002148"}


id: MONDO:0012101
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"juvenile open angle glaucoma","termid":"MONDO:0020367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"glaucoma 1, open angle, J","secondary_identifiers":["UMLS:C1837528","GARD:18228","MESH:C563874","OMIM:608695","MEDGEN:324818"],"synonyms":[{"name":"GLC1J","type":"exact"},{"name":"JOAG1J","type":"exact"},{"name":"JOAG2","type":"exact"},{"name":"glaucoma 1, open angle, J","type":"exact"},{"name":"glaucoma, primary open angle, juvenile-onset, 2","type":"related"}],"termid":"MONDO:0012101","xrefs":{"Monarch":{"xref_id":"0012101"}}}


id: PATO:0000834
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000834 relative visual threshold value (obsolete PATO:0000834)","termid":"PATO:0000834"}


id: GO:0098523
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A neuromuscular junction in which the target muscle cell is a myotube.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuromuscular junction","termid":"GO:0031594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"neuromuscular junction of myotube","termid":"GO:0098523"}


id: PBO:0087370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Spt4p/5p (DSIF) transcription elongation factor complex subunit; the Spt4/5 complex binds to ssRNA in a sequence-specific manner, and along with RNAP I and II has multiple roles regulating transcriptional elongation, RNA processing, quality control, and transcription-coupled repair; localizes to kinetochores and heterochromatin, influencing chromosomal dynamics and silencing; required for transcription through long trinucleotide repeats in ORFs and non-protein coding regions","termid":"PBO:0087370"}


id: PBO:0045438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dpy-19 like C-mannosyltransferase 3","termid":"PBO:0045438"}


id: PBO:0078834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Pro (GGG) 1-1","termid":"PBO:0078834"}


id: GO:0075081
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the host organism modulates the frequency, rate or extent of transmembrane receptor-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by host of symbiont transmembrane receptor-mediated signal transduction (obsolete GO:0075081)","termid":"GO:0075081"}


id: MONDO:1012508
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Guillain-Barr-like polyradiculoneuropathy, non-human animal","termid":"MONDO:1011895"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Guillain-Barr-like polyradiculoneuropathy, domestic cat","secondary_identifiers":["OMIA:002062-9685"],"termid":"MONDO:1012508","xrefs":{"Monarch":{"xref_id":"1012508"}}}


id: GO:0001092
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a general RNA polymerase II transcription factor belonging to the TFIIA complex, one of the complexes involved in formation of the preinitiation complex (PIC) by RNA polymerase II and defined as a basal or general transcription factor.","definition_xrefs":["GOC:krc","PMID:16858867"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II general transcription initiation factor binding","termid":"GO:0001091"},{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"TFIIA-class transcription factor complex binding","synonyms":[{"name":"TFIIA-class transcription factor binding","type":"exact"}],"termid":"GO:0001092"}


id: GO:0061515
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a myeloid cell over time, from its formation to the mature structure.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemopoiesis","termid":"GO:0030097"},{"relation_name":"part_of","term_name":"myeloid cell differentiation","termid":"GO:0030099"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myeloid cell development","termid":"GO:0061515"}


id: GO:0141141
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process by which a symbiont avoids recognition by host's innate immune response by altering or concealing a conserved molecule recognized by the host's cell surface and intracellular pattern recognition receptors, including Toll-like and NOD-like receptors. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:26502908","PMID:29101229","PMID:17215377"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated evasion of host innate immune response","termid":"GO:0141043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated evasion of recognition by host pattern recognition receptor","synonyms":[{"name":"evasion of symbiont recognition by host pattern recognition receptor","type":"exact"}],"termid":"GO:0141141"}


id: MONDO:0016712
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Classic medulloblastoma is a histological variant of medulloblastoma, an embryonic malignancy, having a midline location, occurring most often in children and manifesting with variable symptoms such as headaches, nausea, vomiting and ataxia.","definition_xrefs":["Orphanet:251867"],"direct_ancestors":[{"relation_name":"is_a","term_name":"medulloblastoma","termid":"MONDO:0007959"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"classic medulloblastoma","secondary_identifiers":["NCIT:C54039","icd11.foundation:1548011794","SCTID:699704002","MEDGEN:353541","UMLS:C1707400","GARD:17216"],"synonyms":[{"name":"classic medulloblastoma","type":"exact"}],"termid":"MONDO:0016712","xrefs":{"Monarch":{"xref_id":"0016712"}}}


id: PATO:0001829
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of female and external sexual characteristics of male.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudohermaphrodite","termid":"PATO:0001827"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"female pseudohermaphrodite","termid":"PATO:0001829"}


id: GO:0044403
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process carried out by gene products in an organism that enable the organism to engage in a symbiotic relationship, a more or less intimate association, with another organism. The various forms of symbiosis include parasitism, in which the association is disadvantageous or destructive to one of the organisms; mutualism, in which the association is advantageous, or often necessary to one or both and not harmful to either; and commensalism, in which one member of the association benefits while the other is not affected. However, mutualism, parasitism, and commensalism are often not discrete categories of interactions and should rather be perceived as a continuum of interaction ranging from parasitism to mutualism. In fact, the direction of a symbiotic interaction can change during the lifetime of the symbionts due to developmental changes as well as changes in the biotic/abiotic environment in which the interaction occurs. Microscopic symbionts are often referred to as endosymbionts.","definition_xrefs":["PMID:31257129","GOC:cc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological process involved in interspecies interaction between organisms","termid":"GO:0044419"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"biological process involved in symbiotic interaction","secondary_identifiers":["GO:0044404","GO:0072519","GO:0085031","GO:0043298"],"synonyms":[{"name":"commensalism","type":"narrow"},{"name":"host-pathogen interaction","type":"narrow"},{"name":"parasitism","type":"narrow"},{"name":"symbiosis","type":"related"},{"name":"symbiosis, encompassing mutualism through parasitism","type":"related"},{"name":"symbiotic interaction","type":"related"},{"name":"symbiotic interaction between host and organism","type":"related"},{"name":"symbiotic interaction between organisms","type":"related"},{"name":"symbiotic interaction between species","type":"related"},{"name":"symbiotic process","type":"related"}],"termid":"GO:0044403"}


id: PBO:0036200
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-microtubule_bundles_present_in_decreased_numbers_during_mitotic_interphase","termid":"PBO:0036200"}


id: PBO:0090395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein, G-patch type, splicing factor 45 ortholog","termid":"PBO:0090395"}


id: GO:0047504
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (-)-menthol + NADP+ = (2S,5R)-menthone + H+ + NADPH.","definition_xrefs":["EC:1.1.1.207","RHEA:13917"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"(-)-menthol dehydrogenase activity","secondary_identifiers":["MetaCyc:--MENTHOL-DEHYDROGENASE-RXN","UM-BBD_reactionID:r1182","KEGG_REACTION:R02177"],"synonyms":[{"name":"(-)-menthol:NADP+ oxidoreductase activity","type":"related"},{"name":"monoterpenoid dehydrogenase activity","type":"broad"}],"termid":"GO:0047504"}


id: PBO:0043624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"catechol-O-methyltransferase domain containing 1","termid":"PBO:0043624"}


id: GO:0034734
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A transcription factor complex that forms part of the TFIIIC complex, observed in human. The complex is poorly characterized, but contains the 250-kDa form of HsBdp1, and is thought to include nuclear factor 1 (NF1). It stimulates binding by human TFIIIC2 and is required for transcription activity.","definition_xrefs":["PMID:11433012","PMID:15096501","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase III transcription regulator complex","termid":"GO:0090576"},{"relation_name":"part_of","term_name":"transcription factor TFIIIC complex","termid":"GO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"transcription factor TFIIIC1 complex","termid":"GO:0034734"}


id: PBO:0031495
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_oxidative_stress","termid":"PBO:0031495"}


id: GO:0017197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The acetylation of the N-terminal proline of proteins to form the derivative N-acetyl-L-proline.","definition_xrefs":["RESID:AA0050"],"gene_count":0,"genotype_count":0,"name":"obsolete N-terminal peptidyl-proline acetylation (obsolete GO:0017197)","termid":"GO:0017197"}


id: MONDO:0859577
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"LADD syndrome","termid":"MONDO:0007872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"lacrimoauriculodentodigital syndrome 2","secondary_identifiers":["MEDGEN:1824059","DOID:0081371","OMIM:620192","UMLS:C5774286"],"termid":"MONDO:0859577","xrefs":{"Monarch":{"xref_id":"0859577"}}}


id: FYPO:0008293
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a protein that is not normally found in the cell division site is observed there.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized protein","termid":"FYPO:0003452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"protein mislocalized to cell division site","termid":"FYPO:0008293"}


id: GO:0102866
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an (8Z,11Z,14Z)-icosatrienoyl-containing glycerolipid + 2 Fe(II)-[cytochrome b5] + 2 H+ + O2 = (5Z,8Z,11Z,14Z)-eicosatetraenoyl-containing glycerolipid + 2 Fe(III)-[cytochrome b5] + 2 H2O. Also converts an (8Z,11Z,14Z,17Z)-eicosatetraenoyl-containing glycerolipid into a (5Z,8Z,11Z,14Z,17Z)-eicosapentaenoyl-containing glycerolipid.","definition_xrefs":["EC:1.14.19.30"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"acyl-lipid (8-3)-desaturase activity","synonyms":[{"name":"Delta(5)-fatty-acid desaturase activity","type":"exact"},{"name":"acyl-lipid 5-desaturase activity","type":"related"},{"name":"di-homo-gamma-linolenate delta5 desaturase activity","type":"related"}],"termid":"GO:0102866"}


id: MONDO:0014459
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Adams-Oliver syndrome in which the cause of the disease is a mutation in the NOTCH1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Adams-Oliver syndrome","termid":"MONDO:0007034"},{"relation_name":"is_a","term_name":"non-syndromic limb reduction defect","termid":"MONDO:0019713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Adams-Oliver syndrome 5","secondary_identifiers":["MEDGEN:863407","UMLS:C4014970","OMIM:616028","GARD:16049"],"synonyms":[{"name":"AOS5","type":"related"},{"name":"Adams-Oliver syndrome 5","type":"exact"},{"name":"Adams-Oliver syndrome caused by mutation in NOTCH1","type":"exact"},{"name":"Adams-Oliver syndrome caused by mutation in Notch1","type":"exact"},{"name":"Adams-Oliver syndrome type 5","type":"exact"},{"name":"NOTCH1 Adams-Oliver syndrome","type":"exact"},{"name":"Notch1 Adams-Oliver syndrome","type":"exact"}],"termid":"MONDO:0014459","xrefs":{"Monarch":{"xref_id":"0014459"}}}


id: PBO:0113009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase involved in protein folding and NLS-directed nuclear transport; HSP70 family member; required for ubiquitin-dependent degradation of short-lived proteins; forms a chaperone complex with Ydj1p; localizes to the nucleus, cytoplasm and cell wall; unique functional specificity in the propagation of yeast [URE3] prions and vacuolar-mediated degradation of gluconeogenic enzymes; general targeting factor of Hsp104p to prion fibrils; 98% identity with paralog Ssa2p","termid":"PBO:0113009"}


id: RO:0002162
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed.","direct_ancestors":[{"relation_name":"is_a","term_name":"evolutionarily_related_to","termid":"RO:0002320"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_taxon","termid":"RO:0002162"}


id: PBO:0071189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 30","termid":"PBO:0071189"}


id: MONDO:1011668
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of development or morphogenesis, non-human animal","termid":"MONDO:1011313"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"perosomus elumbis, non-human animal","secondary_identifiers":["OMIA:000789"],"termid":"MONDO:1011668","xrefs":{"Monarch":{"xref_id":"1011668"}}}


id: MONDO:0004253
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign breast neoplasm characterized by the proliferation of multiple papillomas within the lumen of the ducts.","definition_xrefs":["NCIT:C5201"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intraductal papillomatosis","termid":"MONDO:0021099"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intraductal breast papillomatosis","secondary_identifiers":["DOID:7511","MEDGEN:235224","UMLS:C1334247"],"synonyms":[{"name":"breast intraductal papillomatosis","type":"related"},{"name":"intraductal breast papillomatosis","type":"exact"},{"name":"intraductal papillomatosis of breast","type":"exact"},{"name":"intraductal papillomatosis of the breast","type":"exact"}],"termid":"MONDO:0004253","xrefs":{"Monarch":{"xref_id":"0004253"}}}


id: RO:0002084
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"temporally_related_to","termid":"RO:0002222"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"during_which_ends","termid":"RO:0002084"}


id: PBO:0047574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor binding protein 2","termid":"PBO:0047574"}


id: PBO:0042236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centriolar coiled-coil protein 110","termid":"PBO:0042236"}


id: MOD:01530
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces the N6'-hydrogen atom of a lysine residue with the Applied Biosystems iTRAQ8plex-113 reporter+balance group.","definition_xrefs":["Unimod:730#K"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ8plex-113 reporter+balance reagent acylated residue","termid":"MOD:01528"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent N-acylated residue","termid":"MOD:01710"},{"relation_name":"is_a","term_name":"N6-acylated L-lysine","termid":"MOD:01875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01875"}],"interesting_parent_ids":["MOD:01875"],"is_obsolete":false,"name":"iTRAQ8plex-113 reporter+balance reagent N6-acylated lysine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"Representative mass and accurate mass for 113, 114, 116 & 117","type":"related"},{"name":"iTRAQ8plex","type":"related"},{"name":"iTRAQ8plex:13C(7)15N(1)","type":"related"}],"termid":"MOD:01530"}


id: GO:0004929
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Combining with to a member of the Wnt-family of signaling molecules to initiate a change in cell activity.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete frizzled-2 receptor activity (obsolete GO:0004929)","synonyms":[{"name":"frizzled-2 receptor activity","type":"exact"}],"termid":"GO:0004929"}


id: GO:0061718
data:
  {"annotated_genes":["SJAG_03828","SJAG_00027","SJAG_06622","SJAG_02945","SJAG_01310","SJAG_03373","SJAG_00605","SJAG_03660","SJAG_02009","SJAG_04334","SJAG_02107","SJAG_02369","SJAG_04192","SJAG_00461","SJAG_02796","SJAG_06621","SJAG_00839","SJAG_02135","SJAG_03903","SJAG_04495"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107419,111384,111386,118372,100189,111387,74198,79623,107790,111385,107420,111381,105589,111383,107791,111382,96431,105331,107421,99918],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glucose, with the production of pyruvate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucose catabolic process","termid":"GO:0006007"},{"relation_name":"is_a","term_name":"pyruvate metabolic process","termid":"GO:0006090"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00839":null,"SJAG_01310":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"glucose catabolic process to pyruvate","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"glucose catabolism to pyruvate","type":"exact"}],"termid":"GO:0061718","terms_by_termid":{"GO:0061621":null}}


id: MONDO:0010112
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thalamic degeneration, symmetric infantile","secondary_identifiers":["MEDGEN:419748","MESH:C536504","OMIM:273490","Orphanet:3311","GARD:5160","UMLS:C2931220"],"synonyms":[{"name":"symmetric infantile thalamic degeneration","type":"related"},{"name":"symmetrical thalamic degeneration in infants","type":"related"},{"name":"thalamic degeneration, symmetric infantile","type":"exact"}],"termid":"MONDO:0010112","xrefs":{"Monarch":{"xref_id":"0010112"}}}


id: PATO:0002250
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A degree of pigmentation quality that is relative high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"pigmented","termid":"PATO:0002248"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased pigmentation","synonyms":[{"name":"hyperpigmented","type":"exact"}],"termid":"PATO:0002250"}


id: PBO:0084558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Membrane-associated mitochondrial ribosome receptor; forms a complex with Mba1p to facilitate recruitment of mRNA-specific translational activators to ribosomes; ribosome-associated protein involved in the insertion of newly synthesized proteins into the mitochondrial inner membrane; role in protein export and K+/H+ exchange; localizes to the inner mitochondrial membrane; human ortholog Letm1 implicated in Wolf-Hirschhorn syndrome","termid":"PBO:0084558"}


id: MONDO:0010065
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spinocerebellar ataxia type 2","termid":"MONDO:0008458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0002039","MONDO:0005559"],"is_obsolete":false,"name":"spinocerebellar degeneration with slow eye movements","secondary_identifiers":["OMIM:271322"],"synonyms":[{"name":"SDSEM","type":"related"},{"name":"spinocerebellar degeneration with slow eye movements","type":"exact"}],"termid":"MONDO:0010065","xrefs":{"Monarch":{"xref_id":"0010065"}}}


id: PBO:0087027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L13A; not essential for viability; homologous to mammalian ribosomal protein L13, no bacterial homolog; RPL13A has a paralog, RPL13B, that arose from the whole genome duplication","termid":"PBO:0087027"}


id: PBO:0087438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit f of the F0 sector of mitochondrial F1F0 ATP synthase; F1F0 ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis","termid":"PBO:0087438"}


id: MONDO:0000616
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"breast carcinoma by gene expression profile","termid":"MONDO:0006116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"progesterone-receptor negative breast cancer","secondary_identifiers":["DOID:0060078"],"termid":"MONDO:0000616","xrefs":{"Monarch":{"xref_id":"0000616"}}}


id: PBO:0057083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 181b-2","termid":"PBO:0057083"}


id: GO:0043722
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (4-hydroxyphenyl)acetate + H+ = 4-cresol + CO2.","definition_xrefs":["EC:4.1.1.83","RHEA:22732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"4-hydroxyphenylacetate decarboxylase activity","secondary_identifiers":["MetaCyc:4.1.1.83-RXN","KEGG_REACTION:R07312"],"synonyms":[{"name":"4-(hydroxyphenyl)acetate carboxy-lyase (4-methylphenol-forming)","type":"related"},{"name":"4-Hpd activity","type":"related"},{"name":"4-hydroxyphenylacetate carboxy-lyase activity","type":"related"},{"name":"p-Hpd activity","type":"related"},{"name":"p-hydroxyphenylacetate decarboxylase activity","type":"related"}],"termid":"GO:0043722"}


id: PBO:0080459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-set and transmembrane domain containing 2 like","termid":"PBO:0080459"}


id: MONDO:0014941
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"distal arthrogryposis","termid":"MONDO:0019942"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arthrogryposis, distal, with impaired proprioception and touch","secondary_identifiers":["MEDGEN:934659","OMIM:617146","UMLS:C4310692"],"synonyms":[{"name":"DAIPT","type":"exact"},{"name":"arthrogryposis, distal, with impaired proprioception and touch","type":"exact"},{"name":"arthrogryposis, distal, with impaired proprioception and touch; DAIPT","type":"exact"}],"termid":"MONDO:0014941","xrefs":{"Monarch":{"xref_id":"0014941"}}}


id: GO:1900786
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of naphtho-gamma-pyrone.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"},{"relation_name":"is_a","term_name":"naphtho-gamma-pyrone metabolic process","termid":"GO:1900785"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"naphtho-gamma-pyrone catabolic process","synonyms":[{"name":"naphtho-gamma-pyrone breakdown","type":"exact"},{"name":"naphtho-gamma-pyrone catabolism","type":"exact"},{"name":"naphtho-gamma-pyrone degradation","type":"exact"},{"name":"naphtho-gamma-pyrones breakdown","type":"related"},{"name":"naphtho-gamma-pyrones catabolic process","type":"related"},{"name":"naphtho-gamma-pyrones catabolism","type":"related"},{"name":"naphtho-gamma-pyrones degradation","type":"related"}],"termid":"GO:1900786"}


id: PBO:0077504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 221","termid":"PBO:0077504"}


id: PBO:0044581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DBI pseudogene 3","termid":"PBO:0044581"}


id: MONDO:0970961
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare non-saccular limited dorsal myeloschisis, in which the stalk histology is characterized by skin tissue with dermo-epidermal epithelium in continuity with a subcutaneous fibrocollagenous tract containing various ectopic tissues.","definition_xrefs":["Orphanet:645310"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-saccular limited dorsal myeloschisis","termid":"MONDO:0968989"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"fibroneural non-saccular limited dorsal myeloschisis","secondary_identifiers":["UMLS:C5816724","MEDGEN:1853149"],"termid":"MONDO:0970961","xrefs":{"Monarch":{"xref_id":"0970961"}}}


id: PBO:0083252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; identified by homology to related yeast","termid":"PBO:0083252"}


id: MONDO:0100121
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any congenital myopathy in which the cause of the disease is a mutation in the SCN4A gene. It include is a spectrum of autosomal recessive disorders including congenital myasthenic syndrome, fetal hypokinesia, and congenital myopathy.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"congenital myopathy","termid":"MONDO:0019952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0006025"],"is_obsolete":false,"name":"SCN4A-related myopathy, autosomal recessive","synonyms":[{"name":"SCN4A-related myopathy, autosomal recessive","type":"exact"},{"name":"congenital myopathy with \"corona\" fibers, selective muscle atrophy, and craniosynostosis","type":"exact"},{"name":"congenital myopathy with severe fetal hypokinesia","type":"exact"},{"name":"congenital myopathy with severe foetal hypokinesia","type":"exact"},{"name":"myopathy with ptosis and mild dystrophic pattern","type":"exact"}],"termid":"MONDO:0100121","xrefs":{"Monarch":{"xref_id":"0100121"}}}


id: PBO:0034326
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-existence_ends_at_point","termid":"PBO:0034326"}


id: PBO:0081184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc fingers and homeoboxes 1","termid":"PBO:0081184"}


id: SO:0002045
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A PRE is a (yeast) TFBS with consensus site [TGAAAC(A/G)].","definition_xrefs":["PMID:1489142","SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TF_binding_site","termid":"SO:0000235"},{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pheromone_response_element","synonyms":[{"name":"PRE","type":"exact"},{"name":"pheromone response element","type":"exact"}],"termid":"SO:0002045"}


id: GO:0005762
data:
  {"annotated_genes":["SJAG_01727","SJAG_02836","SJAG_04490","SJAG_03040","SJAG_03176","SJAG_04244","SJAG_05573","SJAG_01045","SJAG_06253","SJAG_03636","SJAG_01473","SJAG_01719","SJAG_05270","SJAG_00315","SJAG_01413","SJAG_01463","SJAG_01303","SJAG_04493","SJAG_01478","SJAG_04019","SJAG_04689","SJAG_00497","SJAG_04216","SJAG_02762","SJAG_03284","SJAG_07009","SJAG_02071","SJAG_01829","SJAG_00844","SJAG_03402","SJAG_01630","SJAG_05218","SJAG_03192","SJAG_05244","SJAG_00086","SJAG_00799","SJAG_04207","SJAG_04889","SJAG_03649","SJAG_06110","SJAG_03297","SJAG_03459","SJAG_01591","SJAG_04893"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[68355,71379,72522,72964,73579,73909,74232,74566,74827,76588,77160,77390,78395,78424,79075,79671,79907,79935,80218,81039,81199,81517,81653,82230,98519,99884,99905,105631,107671,108728,110058,110157,110207,111832,112770,113102,114229,114732,115459,116611,116729,118175,118284,119949],"is_not":false,"summary":null,"term":"GO:0005762"}]},"cv_name":"cellular_component","definition":"The larger of the two subunits of a mitochondrial ribosome. Two sites on the ribosomal large subunit are involved in translation: the aminoacyl site (A site) and peptidyl site (P site).","definition_xrefs":["GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organellar large ribosomal subunit","termid":"GO:0000315"},{"relation_name":"is_a","term_name":"mitochondrial protein-containing complex","termid":"GO:0098798"},{"relation_name":"part_of","term_name":"mitochondrial ribosome","termid":"GO:0005761"}],"gene_count":44,"genes_by_uniquename":{"SJAG_00086":null,"SJAG_00315":null,"SJAG_00497":null,"SJAG_00799":null,"SJAG_00844":null,"SJAG_01045":null,"SJAG_01303":null,"SJAG_01413":null,"SJAG_01463":null,"SJAG_01473":null,"SJAG_01478":null,"SJAG_01591":null,"SJAG_01630":null,"SJAG_01719":null,"SJAG_01727":null,"SJAG_01829":null,"SJAG_02071":null,"SJAG_02762":null,"SJAG_02836":null,"SJAG_03040":null,"SJAG_03176":null,"SJAG_03192":null,"SJAG_03284":null,"SJAG_03297":null,"SJAG_03402":null,"SJAG_03459":null,"SJAG_03636":null,"SJAG_03649":null,"SJAG_04019":null,"SJAG_04207":null,"SJAG_04216":null,"SJAG_04244":null,"SJAG_04490":null,"SJAG_04493":null,"SJAG_04689":null,"SJAG_04889":null,"SJAG_04893":null,"SJAG_05218":null,"SJAG_05244":null,"SJAG_05270":null,"SJAG_05573":null,"SJAG_06110":null,"SJAG_06253":null,"SJAG_07009":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737","GO:0005739"],"is_obsolete":false,"name":"mitochondrial large ribosomal subunit","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"39S ribosomal subunit, mitochondrial","type":"narrow"}],"termid":"GO:0005762","terms_by_termid":{"GO:0005762":null}}


id: PBO:0057238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 425","termid":"PBO:0057238"}


id: FYECO:0000282
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which aminolevulinic acid was added to the medium or assay buffers in a limiting quantity compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping limited","termid":"FYECO:0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ limited aminolevulinic acid","secondary_identifiers":["PMID:7565608"],"synonyms":[{"name":"+ limited ALA","type":"exact"}],"termid":"FYECO:0000282"}


id: PBO:0036471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial aminoacyl-tRNA hydrolase Pth3 (predicted)","termid":"PBO:0036471"}


id: PBO:0003334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF3074 family protein","termid":"PBO:0003334"}


id: PBO:0054720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2129","termid":"PBO:0054720"}


id: GO:2001188
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immune effector process","termid":"GO:0002697"},{"relation_name":"is_a","term_name":"regulation of immune response","termid":"GO:0050776"},{"relation_name":"is_a","term_name":"regulation of T cell activation","termid":"GO:0050863"},{"relation_name":"regulates","term_name":"T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell","termid":"GO:0002291"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell","synonyms":[{"name":"regulation of T lymphocyte activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell","type":"exact"},{"name":"regulation of T-cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell","type":"exact"},{"name":"regulation of T-lymphocyte activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell","type":"exact"}],"termid":"GO:2001188"}


id: GO:1901054
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of sarcosine.","definition_xrefs":["PMID:31402327","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified amino acid biosynthetic process","termid":"GO:0042398"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid biosynthetic process","termid":"GO:0170043"},{"relation_name":"is_a","term_name":"sarcosine metabolic process","termid":"GO:1901052"},{"relation_name":"is_a","term_name":"alpha-amino acid biosynthetic process","termid":"GO:1901607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"sarcosine biosynthetic process","synonyms":[{"name":"sarcosine anabolism","type":"exact"},{"name":"sarcosine biosynthesis","type":"exact"},{"name":"sarcosine formation","type":"exact"},{"name":"sarcosine synthesis","type":"exact"}],"termid":"GO:1901054"}


id: GO:0047287
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: beta-D-galactoside + CMP-N-acetyl-beta-neuraminate = an N-acetyl-alpha-neuraminyl-(2->6)-beta-D-galactosyl derivative + CMP + H+.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete lactosylceramide alpha-2,6-N-sialyltransferase activity (obsolete GO:0047287)","termid":"GO:0047287"}


id: MONDO:0100046
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing exfoliation syndrome.","definition_xrefs":["MONDO:patterns/inherited_susceptibility"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exfoliation syndrome, susceptibility to","secondary_identifiers":["UMLS:C4016255","MEDGEN:864692","OMIM:177650"],"synonyms":[{"name":"pseudoexfoliation glaucoma","type":"related"},{"name":"pseudoexfoliation of the lens","type":"related"},{"name":"pseudoexfoliation syndrome","type":"related"}],"termid":"MONDO:0100046","xrefs":{"Monarch":{"xref_id":"0100046"}}}


id: PBO:0043778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxypeptidase A4","termid":"PBO:0043778"}


id: MONDO:0009563
data:
  {"annotated_genes":["SJAG_02433","SJAG_03290"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86956],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014057"},{"annotations":[87045],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009529"}]},"cv_name":"mondo","definition":"An autosomal recessive inherited disorder caused by mutations in the BCKDHA, BCKDHB, DBT, and DLD genes. It is characterized by a deficiency of branched-chain alpha-keto acid dehydrogenase complex, leading to accumulation of metabolites in the body fluids. The name of the disease derives from the sweet odor of the urine in infants, reminiscent of maple syrup. Signs and symptoms usually appear in infancy and include lethargy and developmental delays. If untreated, it may lead to seizures, coma, and death.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn organic aciduria","termid":"MONDO:0000688"},{"relation_name":"is_a","term_name":"inborn disorder of branched-chain amino acid metabolism","termid":"MONDO:0019242"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02433":null,"SJAG_03290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"maple syrup urine disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:27718001","MedDRA:10026817","MESH:D008375","MEDGEN:6217","OMIMPS:248600","NCIT:C34806","icd11.foundation:1623706568","NANDO:2200473","NANDO:1200791","UMLS:C0024776","GARD:3228","DOID:9269","Orphanet:511","ICD10CM:E71.0","NORD:1400"],"synonyms":[{"name":"BCKD deficiency","type":"exact"},{"name":"BCKDH deficiency","type":"exact"},{"name":"Keto acid decarboxylase deficiency","type":"related"},{"name":"Ketoacidaemia","type":"exact"},{"name":"MSUD","type":"exact"},{"name":"branched chain ketoaciduria","type":"exact"},{"name":"branched-chain 2-ketoacid dehydrogenase deficiency","type":"exact"},{"name":"branched-chain Alpha-Keto acid dehydrogenase deficiency","type":"related"},{"name":"branched-chain ketoaciduria","type":"exact"},{"name":"dihydrolipoamide dehydrogenase deficiency","type":"related"},{"name":"maple syrup urine disease","type":"exact"},{"name":"maple syrup urine disease, Intermediate","type":"related"},{"name":"maple syrup urine disease, classic","type":"related"},{"name":"maple syrup urine disease, intermittent","type":"related"},{"name":"maple syrup urine disease, thiamine-responsive","type":"related"},{"name":"maple syrup urine disease, type 1A","type":"narrow"},{"name":"maple syrup urine disease, type 1B","type":"narrow"},{"name":"maple syrup urine disease, type 2","type":"narrow"}],"termid":"MONDO:0009563","terms_by_termid":{"MONDO:0009529":null,"MONDO:0014057":null},"xrefs":{"Monarch":{"xref_id":"0009563"}}}


id: PBO:0066272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein Y-linked family 1 member F","termid":"PBO:0066272"}


id: PBO:0075031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 115-42","termid":"PBO:0075031"}


id: MONDO:0037829
data:
  {"annotated_genes":["SJAG_01859","SJAG_04882","SJAG_03811","SJAG_03797","SJAG_06634","SJAG_04681","SJAG_01359","SJAG_02850"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87992],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013869"},{"annotations":[87298],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007068"},{"annotations":[88444],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012099"},{"annotations":[88024,88025],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010699"},{"annotations":[87848],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014719"},{"annotations":[88006],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010299"},{"annotations":[88005],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010298"},{"annotations":[89109,89110],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010395"},{"annotations":[88325],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013171"}]},"cv_name":"mondo","definition":"A disease that has its basis in the disruption of purine nucleobase metabolic process.","definition_xrefs":["MONDO:patterns/basis_in_disruption_of_process"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic disease","termid":"MONDO:0005066"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01359":null,"SJAG_01859":null,"SJAG_02850":null,"SJAG_03797":null,"SJAG_03811":null,"SJAG_04681":null,"SJAG_04882":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"purine metabolism disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:32612005","UMLS:C0268104","MEDGEN:541199"],"synonyms":[{"name":"disorder of purine metabolism","type":"exact"},{"name":"disorder of purine nucleobase metabolic process","type":"exact"},{"name":"purine nucleobase metabolic process disease","type":"exact"}],"termid":"MONDO:0037829","terms_by_termid":{"MONDO:0007068":null,"MONDO:0010298":null,"MONDO:0010299":null,"MONDO:0010395":null,"MONDO:0010699":null,"MONDO:0012099":null,"MONDO:0013171":null,"MONDO:0013869":null,"MONDO:0014719":null},"xrefs":{"Monarch":{"xref_id":"0037829"}}}


id: GO:0006912
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete phagosome formation (obsolete GO:0006912)","synonyms":[{"name":"phagosome formation","type":"exact"}],"termid":"GO:0006912"}


id: PBO:0070853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13 pseudogene 6","termid":"PBO:0070853"}


id: MONDO:0043786
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of a serous membrane.","definition_xrefs":["NCIT:C70428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serositis","secondary_identifiers":["UMLS:C0036749","MESH:D012700","SCTID:370469003","MEDGEN:20711"],"synonyms":[{"name":"Serositides","type":"related"},{"name":"inflammation of serous membrane","type":"exact"},{"name":"serositis","type":"exact"},{"name":"serous membrane inflammation","type":"exact"}],"termid":"MONDO:0043786","xrefs":{"Monarch":{"xref_id":"0043786"}}}


id: PBO:0087657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the HIR complex; HIR is a nucleosome assembly complex involved in regulation of histone gene transcription; mutants display synthetic defects with subunits of FACT, a complex that allows passage of RNA Pol II through nucleosomes","termid":"PBO:0087657"}


id: FYPO:0000757
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to nigericin. Cells stop growing (and may die) at a concentration of nigericin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to nigericin","synonyms":[{"name":"hypersensitive to nigericin","type":"exact"},{"name":"sensitive to nigericin during mitotic cell cycle","type":"related"},{"name":"sensitive to nigericin during vegetative growth","type":"exact"}],"termid":"FYPO:0000757"}


id: MOD:00598
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-(2-hydroxyethyl)cysteine","definition_xrefs":["PubMed:15351294","Unimod:278"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"S-(2-hydroxyethyl)cysteine","synonyms":[{"name":"Ethanolation of Cys","type":"related"},{"name":"Ethanolyl","type":"related"}],"termid":"MOD:00598"}


id: PBO:0090826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase","termid":"PBO:0090826"}


id: PBO:0000731
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-hydroxybutyricaciduria","termid":"PBO:0000731"}


id: GO:0060335
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of an interferon-gamma-mediated signaling pathway.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine-mediated signaling pathway","termid":"GO:0001961"},{"relation_name":"is_a","term_name":"positive regulation of response to type II interferon","termid":"GO:0060332"},{"relation_name":"is_a","term_name":"regulation of type II interferon-mediated signaling pathway","termid":"GO:0060334"},{"relation_name":"positively_regulates","term_name":"type II interferon-mediated signaling pathway","termid":"GO:0060333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of type II interferon-mediated signaling pathway","synonyms":[{"name":"positive regulation of gamma-interferon-mediated signaling pathway","type":"related"},{"name":"positive regulation of immune interferon-mediated signaling pathway","type":"exact"},{"name":"positive regulation of interferon-gamma-mediated signaling pathway","type":"broad"},{"name":"positive regulation of interferon-gamma-mediated signalling pathway","type":"exact"},{"name":"positive regulation of type II IFN-mediated pathway","type":"broad"}],"termid":"GO:0060335"}


id: MONDO:0100001
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An IgE antibody response to a mammalian oligosaccharide epitope, galactose-alpha-1,3-galactose (alpha-gal).","definition_xrefs":["PMID:25747720"],"direct_ancestors":[{"relation_name":"is_a","term_name":"allergic disease","termid":"MONDO:0005271"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"alpha-gal syndrome","secondary_identifiers":["MEDGEN:1778444","UMLS:C5442181"],"synonyms":[{"name":"AGS","type":"exact"},{"name":"allergic galactose-alpha-1,3-galactose disease","type":"exact"},{"name":"alpha-gal allergy","type":"exact"},{"name":"red meat allergy","type":"exact"},{"name":"tick bite meat allergy","type":"exact"}],"termid":"MONDO:0100001","xrefs":{"Monarch":{"xref_id":"0100001"}}}


id: SO:0000070
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute to describe a gene when it is located within the intron of another gene and on the opposite strand.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inside_intron","termid":"SO:0000069"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inside_intron_antiparallel","synonyms":[{"name":"inside intron antiparallel","type":"exact"}],"termid":"SO:0000070"}


id: MONDO:1011501
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Epidermolysis bullosa simplex that occurs in water buffalo.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermolysis bullosa simplex, non-human animal","termid":"MONDO:1011428"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epidermolysis bullosa simplex, water buffalo","secondary_identifiers":["OMIA:002082-89462"],"termid":"MONDO:1011501","xrefs":{"Monarch":{"xref_id":"1011501"}}}


id: FYPO:0006142
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the transition from G0 phase (quiescence) to G1 is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell cycle process","termid":"FYPO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal G0 to G1 transition","synonyms":[{"name":"normal exit from cell quiescence","type":"exact"}],"termid":"FYPO:0006142"}


id: PR:P87055
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC57A10.07 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C57A10.07 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC57A10.07","synonyms":[{"name":"Spom972h-SPAC57A10.07","type":"exact"}],"termid":"PR:P87055"}


id: GO:0044351
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An endocytosis process that results in the uptake of liquid material by cells from their external environment by the 'ruffling' of the cell membrane to form heterogeneously sized intracellular vesicles called macropinosomes, which can be up to 5 micrometers in size.","definition_xrefs":["PMID:14732047"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pinocytosis","termid":"GO:0006907"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192","GO:0051179"],"is_obsolete":false,"name":"macropinocytosis","secondary_identifiers":["GO:1902538"],"synonyms":[{"name":"clathrin-independent pinocytosis","type":"broad"},{"name":"single-organism macropinocytosis","type":"related"}],"termid":"GO:0044351"}


id: GO:0043139
data:
  {"annotated_genes":["SJAG_03495","SJAG_03780","SJAG_00995"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[59128,78755,94068],"is_not":false,"summary":null,"term":"GO:0043139"}]},"cv_name":"molecular_function","definition":"Unwinding a DNA helix in the 5' to 3' direction, driven by ATP hydrolysis.","definition_xrefs":["EC:5.6.2.3","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA helicase activity","termid":"GO:0003678"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00995":null,"SJAG_03495":null,"SJAG_03780":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0140097","GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"5'-3' DNA helicase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0008722","Reactome:R-HSA-6782131","GO:0043141"],"synonyms":[{"name":"5' to 3' DNA helicase activity","type":"exact"},{"name":"ATP-dependent 5' to 3' DNA helicase activity","type":"exact"},{"name":"ATP-dependent 5'-3' DNA helicase activity","type":"exact"},{"name":"DNA helicase IV activity","type":"narrow"}],"termid":"GO:0043139","terms_by_termid":{"GO:0043139":null}}


id: GO:0060380
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of binding to single-stranded telomeric DNA.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of single-stranded telomeric DNA binding (obsolete GO:0060380)","synonyms":[{"name":"regulation of telomeric ssDNA binding","type":"exact"}],"termid":"GO:0060380"}


id: PBO:0077784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA topoisomerase I pseudogene 2","termid":"PBO:0077784"}


id: MONDO:0001306
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete recurrent corneal erosion (obsolete MONDO:0001306)","secondary_identifiers":["DOID:11541","HP:0000495","SCTID:2055003","ICD9:371.42"],"synonyms":[{"name":"recurrent erosion of cornea","type":"exact"},{"name":"recurrent erosion syndrome","type":"exact"}],"termid":"MONDO:0001306","xrefs":{"Monarch":{"xref_id":"0001306"}}}


id: FYPO:0000591
data:
  {"alleles_by_uniquename":{"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121484],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000595"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transposition is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03689":null},"genotype_count":1,"genotypes_by_uniquename":{"dcr1delta":{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal transposition","references_by_uniquename":{"PMID:35226668":null},"single_locus_annotated_genes":["SJAG_03689"],"single_locus_genotype_uniquenames":["dcr1delta"],"synonyms":[{"name":"abnormal transposable element transposition","type":"exact"},{"name":"abnormal transposition during mitotic cell cycle","type":"related"},{"name":"abnormal transposition during vegetative growth","type":"exact"},{"name":"transposable element transposition: abnormal","type":"related"}],"termid":"FYPO:0000591","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000162":null,"FYPO:0000595":null,"FYPO_EXT:0000001":null}}


id: PBO:0088019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Type V myosin motor involved in actin-based transport of cargos; required for the polarized delivery of secretory vesicles, the vacuole, late Golgi elements, peroxisomes, lipid droplets, and the mitotic spindle; MYO2 has a paralog, MYO4, that arose from the whole genome duplication","termid":"PBO:0088019"}


id: GO:0007245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Upregulation of MAPKKK activity in the context of transduction of mating pheromone signal, as described for Saccharomyces.","definition_xrefs":["PMID:9561267"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of MAPKKK (mating sensu Saccharomyces) (obsolete GO:0007245)","synonyms":[{"name":"activation of MAPKKK (mating sensu Saccharomyces)","type":"exact"}],"termid":"GO:0007245"}


id: FYPO:0008381
data:
  {"alleles_by_uniquename":{"SJAG_01834:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01834","name":"pom152delta","uniquename":"SJAG_01834:allele-1"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121569],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007770"},{"annotations":[121389,121387,121388,121391],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0004890"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype that affects the localization of a  specific region of a chromosome in a cell in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization phenotype during vegetative growth","termid":"FYPO:0001337"},{"relation_name":"is_a","term_name":"chromosome region localization phenotype","termid":"FYPO:0008383"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01834":null,"SJAG_03449":null,"SJAG_03892":null},"genotype_count":5,"genotypes_by_uniquename":{"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]},"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type":{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]},"pom152delta":{"display_name":"pom152delta","display_uniquename":"pom152delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01834:allele-1","expression":"Null"}]}]},"vps4delta":{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"chromosome region localization phenotype during vegetative growth","references_by_uniquename":{"PMID:24184107":null,"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_01834","SJAG_03449","SJAG_03892"],"single_locus_genotype_uniquenames":["man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","man1delta","pom152delta","vps4delta"],"termid":"FYPO:0008381","terms_by_termid":{"FYPO:0004890":null,"FYPO:0007770":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: GO:0016597
data:
  {"annotated_genes":["SJAG_00964","SJAG_00635","SJAG_03861"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[59769,68926],"is_not":false,"summary":null,"term":"GO:0016597"},{"annotations":[75938],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016594"}]},"cv_name":"molecular_function","definition":"Binding to an amino acid, organic acids containing one or more amino substituents.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding","termid":"GO:0005488"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00635":null,"SJAG_00964":null,"SJAG_03861":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"amino acid binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"termid":"GO:0016597","terms_by_termid":{"GO:0016594":null,"GO:0016597":null}}


id: GO:0033762
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucagon stimulus.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to peptide hormone","termid":"GO:0043434"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to glucagon","synonyms":[{"name":"response to glucagon stimulus","type":"exact"}],"termid":"GO:0033762"}


id: MONDO:1012596
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Oculocutaneous albinism that occurs in humpback whales due to a mutation in the TYR gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oculocutaneous albinism, non-human animal","termid":"MONDO:1012579"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oculocutaneous albinism, TYR-related, humpback whale","secondary_identifiers":["OMIA:000202-9773"],"synonyms":[{"name":"coat/skin colour, oculocutaneous albinism type I (OCA1), TYR-related in Megaptera novaeangliae (humpback whale)","type":"exact"}],"termid":"MONDO:1012596","xrefs":{"Monarch":{"xref_id":"1012596"}}}


id: MONDO:1010084
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A dermatomyositis characterized by the presence of anti-NXP2 autoantibodies.","definition_xrefs":["PMID:31279808"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dermatomyositis","termid":"MONDO:0016367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0005093"],"is_obsolete":false,"name":"anti-NXP2 dermatomyositis","synonyms":[{"name":"anti-nuclear matrix protein 2 dermatomyositis","type":"exact"}],"termid":"MONDO:1010084","xrefs":{"Monarch":{"xref_id":"1010084"}}}


id: PBO:0087605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC); subunits of this complex are: Cab2p, Cab3p, Cab4p, Cab5p, Sis2p and Vhs3p; involved in histone acylation; probable pantetheine-phosphate adenylyltransferase (PPAT); PPAT catalyzes the fourth step in the biosynthesis of coenzyme A from pantothenate; null mutant lethality is complemented by E. coli coaD (encoding PPAT) and by human COASY","termid":"PBO:0087605"}


id: GO:0005137
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interleukin-5 receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"},{"relation_name":"is_a","term_name":"growth factor receptor binding","termid":"GO:0070851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"interleukin-5 receptor binding","synonyms":[{"name":"IL-5","type":"narrow"},{"name":"interleukin-5 receptor ligand","type":"narrow"}],"termid":"GO:0005137"}


id: PBO:0005184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"asteroid homolog, XP-G family protein","termid":"PBO:0005184"}


id: GO:0060168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of G protein-coupled receptor signaling pathway","termid":"GO:0045745"},{"relation_name":"is_a","term_name":"regulation of adenosine receptor signaling pathway","termid":"GO:0060167"},{"relation_name":"positively_regulates","term_name":"G protein-coupled adenosine receptor signaling pathway","termid":"GO:0001973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of adenosine receptor signaling pathway","synonyms":[{"name":"positive regulation of adenosine receptor signalling pathway","type":"exact"}],"termid":"GO:0060168"}


id: PBO:0039336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha kinase 3","termid":"PBO:0039336"}


id: PBO:0061771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"odorant binding protein 2A","termid":"PBO:0061771"}


id: GO:0051482
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the concentration of calcium ions in the cytosol that occurs as part of a PLC-activating G protein-coupled receptor signaling pathway. G-protein-activated PLC hydrolyses phosphatidylinositol-bisphosphate (PIP2) to release diacylglycerol (DAG) and inositol trisphosphate (IP3). IP3 then binds to calcium release channels in the endoplasmic reticulum (ER) to trigger calcium ion release into the cytosol.","definition_xrefs":["GOC:signaling","GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway (obsolete GO:0051482)","synonyms":[{"name":"elevation of calcium ion concentration in cytoplasm during G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"broad"},{"name":"elevation of calcium ion concentration in cytosol during G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"related"},{"name":"elevation of cytoplasmic calcium ion concentration during G-protein signaling, coupled to IP3 second messenger (phospholipase C activating)","type":"broad"},{"name":"elevation of cytoplasmic calcium ion concentration during G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"broad"},{"name":"elevation of cytosolic calcium ion concentration during G-protein signalling, coupled to IP3 second messenger (phospholipase C activating)","type":"related"},{"name":"elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger","type":"exact"},{"name":"elevation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway","type":"exact"},{"name":"positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway","type":"exact"}],"termid":"GO:0051482"}


id: PBO:0045933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongation factor like GTPase 1","termid":"PBO:0045933"}


id: PBO:0078506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tribbles pseudokinase 3","termid":"PBO:0078506"}


id: PBO:0083790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein involved in the TOR signaling pathway; physically associates with the protein phosphatase 2A and the SIT4 protein phosphatase catalytic subunits","termid":"PBO:0083790"}


id: GO:0099085
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-[(3,5-dichloro-2,6-dihydroxy-4-methoxy)phenyl]hexan-1-one => 1-[(3-chloro-2,6-dihydroxy-4-methoxy)phenyl]hexan-1-one + Cl-.","definition_xrefs":["PMID:1521542","PMID:22035794"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-halide lyase activity","termid":"GO:0016848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"DIF dechlorinase activity","synonyms":[{"name":"1-(3,5-dichloro-2,6-dihydroxy-4-methoxyphenyl)hexan-1-one 3(5)-dechlorinase activity","type":"exact"},{"name":"1-[(3,5-dichloro-2,6-dihydroxy-4-methoxy)phenyl]hexan-1-one 3(5)-dechlorinase activity","type":"exact"},{"name":"DIF-1 3(5)-dechlorinase activity","type":"exact"},{"name":"DIF-1 dechlorinase activity","type":"exact"},{"name":"differentiation-inducing factor 1 dechlorinase activity","type":"exact"},{"name":"differentiation-inducing factor dechlorinase activity","type":"exact"}],"termid":"GO:0099085"}


id: MONDO:0015948
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare genetic skin vascular disorder (obsolete MONDO:0015948)","secondary_identifiers":["Orphanet:183478"],"synonyms":[{"name":"genetic skin vascular disorder","type":"related"}],"termid":"MONDO:0015948","xrefs":{"Monarch":{"xref_id":"0015948"}}}


id: MONDO:0000672
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An agnosia that is a loss of the ability to perceive a whole object while perceiving only parts of details.","definition_xrefs":["DOID:0060142"],"direct_ancestors":[{"relation_name":"is_a","term_name":"visual agnosia","termid":"MONDO:0000685"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"form agnosia","secondary_identifiers":["UMLS:C0563621","MEDGEN:107878"],"termid":"MONDO:0000672","xrefs":{"Monarch":{"xref_id":"0000672"}}}


id: PBO:0083789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein involved in rRNA processing and ribosome biogenesis; forms a complex with Utp22p; protein abundance increases in response to DNA replication stress","termid":"PBO:0083789"}


id: PBO:0027183
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_chromatin_silencing_at_centromere_outer_repeat","termid":"PBO:0027183"}


id: PR:O14112
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps1001 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14112"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S10-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31G5.17c","synonyms":[{"name":"Spom972h-rps1001","type":"exact"}],"termid":"PR:O14112"}


id: PBO:0029854
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_and_H3-K14_acetylation_at_centromere_outer_repeat","termid":"PBO:0029854"}


id: GO:2000291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of myoblast proliferation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell population proliferation","termid":"GO:0042127"},{"relation_name":"regulates","term_name":"myoblast proliferation","termid":"GO:0051450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of myoblast proliferation","termid":"GO:2000291"}


id: PBO:0084192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Histone H2B; core histone protein required for chromatin assembly and chromosome function; nearly identical to HTB2; Rad6p-Bre1p-Lge1p mediated ubiquitination regulates reassembly after DNA replication, transcriptional activation, meiotic DSB formation and H3 methylation","termid":"PBO:0084192"}


id: PBO:0051047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 1-26","termid":"PBO:0051047"}


id: GO:0052217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The movement of a motile cell or organism in response to environmental oxygen on, within or near a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete aerotaxis in environment of other organism involved in symbiotic interaction (obsolete GO:0052217)","synonyms":[{"name":"aerotaxis in environment of other organism during symbiotic interaction","type":"related"},{"name":"aerotaxis in response to environment of other organism","type":"exact"}],"termid":"GO:0052217"}


id: GO:0044256
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The whole of the physical, chemical, and biochemical processes carried out by living organisms to break down ingested proteins into components that may be easily absorbed and directed into metabolism.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"digestion","termid":"GO:0007586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein digestion","termid":"GO:0044256"}


id: PBO:0064339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDX1 associated lncRNA, upregulator of transcription","termid":"PBO:0064339"}


id: MONDO:0017209
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"choroiditis","termid":"MONDO:0001280"},{"relation_name":"is_a","term_name":"endophthalmitis","termid":"MONDO:0016047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"infectious posterior uveitis","secondary_identifiers":["Orphanet:279919","UMLS:C5230265","MEDGEN:1701702","GARD:21066","icd11.foundation:1722408748"],"termid":"MONDO:0017209","xrefs":{"Monarch":{"xref_id":"0017209"}}}


id: PATO:0002346
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes.","definition_xrefs":["PATOC:MH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"concave 3-D shape","termid":"PATO:0002008"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snowman-shaped","termid":"PATO:0002346"}


id: PBO:0076787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trans-2,3-enoyl-CoA reductase pseudogene 1","termid":"PBO:0076787"}


id: PBO:0060794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit S5","termid":"PBO:0060794"}


id: SO:0000741
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kinetoplast is an interlocked network of thousands of minicircles and tens of maxicircles, located near the base of the flagellum of some protozoan species.","definition_xrefs":["PMID:8395055"],"direct_ancestors":[{"relation_name":"has_part","term_name":"maxicircle","termid":"SO:0000742"},{"relation_name":"has_part","term_name":"minicircle","termid":"SO:0000980"},{"relation_name":"is_a","term_name":"genome","termid":"SO:0001026"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetoplast","secondary_identifiers":["http://en.wikipedia.org/wiki/Kinetoplast","SO:0000826"],"synonyms":[{"name":"kinetoplast_chromosome","type":"exact"}],"termid":"SO:0000741"}


id: PBO:0040745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brain cytoplasmic RNA 1","termid":"PBO:0040745"}


id: MONDO:0005205
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete systemic lupus erythematosus (obsolete MONDO:0005205)","termid":"MONDO:0005205","xrefs":{"Monarch":{"xref_id":"0005205"}}}


id: GO:0046239
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of phthalate, the anion of phthalic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phthalate metabolic process","termid":"GO:0018963"},{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"},{"relation_name":"is_a","term_name":"carboxylic acid catabolic process","termid":"GO:0046395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"phthalate catabolic process","synonyms":[{"name":"phthalate breakdown","type":"exact"},{"name":"phthalate catabolism","type":"exact"},{"name":"phthalate degradation","type":"exact"}],"termid":"GO:0046239"}


id: PBO:0055695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIX1L antisense RNA 1","termid":"PBO:0055695"}


id: MONDO:0018548
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute poisoning with a membrane-stabilizing effect is potentially life-threatening. The principle drugs involved are tricyclic antidepressants, chloroquine, some types of beta blockers, class IA antiarrhythmics, carbamazepin and cocaine.","definition_xrefs":["Orphanet:43119"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"},{"relation_name":"is_a","term_name":"poisoning","termid":"MONDO:0029000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute poisoning by drugs with membrane-stabilizing effect","termid":"MONDO:0018548","xrefs":{"Monarch":{"xref_id":"0018548"}}}


id: GO:0106012
data:
  {"annotated_genes":["SJAG_03602"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100354],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120047"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein localization to the medial cortex.","definition_xrefs":["GOC:hjd","PMID:19474789"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to medial cortex","termid":"GO:0106011"},{"relation_name":"is_a","term_name":"positive regulation of protein localization to cell cortex","termid":"GO:1904778"},{"relation_name":"positively_regulates","term_name":"protein localization to medial cortex","termid":"GO:0071574"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03602":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein localization to medial cortex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106012","terms_by_termid":{"GO:0120047":null}}


id: MONDO:0021130
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited metabolic disease that is has its basis in the disruption of sphingolipid biosynthetic process.","definition_xrefs":["MONDO:patterns/inborn_metabolic"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited lipid metabolism disorder","termid":"MONDO:0002525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"disorder of sphingolipid biosynthesis","synonyms":[{"name":"inborn error of sphingolipid biosynthetic process","type":"exact"},{"name":"inborn sphingolipid biosynthetic process disorder","type":"exact"},{"name":"rare inborn error of sphingolipid biosynthetic process","type":"exact"}],"termid":"MONDO:0021130","xrefs":{"Monarch":{"xref_id":"0021130"}}}


id: GO:0047655
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: allyl alcohol + NADP+ = acrolein + H+ + NADPH.","definition_xrefs":["EC:1.1.1.54","RHEA:12168"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"allyl-alcohol dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R03572","MetaCyc:ALLYL-ALCOHOL-DEHYDROGENASE-RXN"],"synonyms":[{"name":"allyl-alcohol:NADP+ oxidoreductase activity","type":"related"}],"termid":"GO:0047655"}


id: FYPO:0005025
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic chromosome condensation does not occur in centromeric regions (i.e. adjacent to the kinetochores).","definition_xrefs":["PMID:21633354","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished mitotic chromosome condensation","termid":"FYPO:0003844"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0000641","FYPO:0005447","FYPO:0001320","FYPO:0000631","FYPO:0000002","FYPO:0000337","FYPO:0001985"],"is_obsolete":false,"name":"abolished mitotic chromosome centromere condensation","synonyms":[{"name":"abolished chromosome centromere condensation during mitotic cell cycle","type":"related"},{"name":"abolished mitotic chromosome centromere condensation during vegetative growth","type":"exact"},{"name":"abolished mitotic chromosome condensation at centromere","type":"exact"},{"name":"mitotic chromosome condensation abolished at centromere","type":"exact"},{"name":"mitotic chromosome kinetochore condensation","type":"exact"}],"termid":"FYPO:0005025"}


id: PBO:0048189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-aminobutyric acid type B receptor subunit 1","termid":"PBO:0048189"}


id: GO:0061208
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the mesonephros as it progresses from its formation to the mature state.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation involved in kidney development","termid":"GO:0061005"},{"relation_name":"part_of","term_name":"mesonephros development","termid":"GO:0001823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell differentiation involved in mesonephros development","termid":"GO:0061208"}


id: PBO:0057769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 2115","termid":"PBO:0057769"}


id: GO:0090100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of transmembrane receptor protein serine/threonine kinase signaling pathway","termid":"GO:0090092"},{"relation_name":"positively_regulates","term_name":"cell surface receptor protein serine/threonine kinase signaling pathway","termid":"GO:0007178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway","synonyms":[{"name":"positive regulation of transmembrane receptor protein serine/threonine kinase signalling pathway","type":"exact"}],"termid":"GO:0090100"}


id: PBO:0001516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone acetyltransferase Mst2","termid":"PBO:0001516"}


id: PBO:0068228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 535","termid":"PBO:0068228"}


id: GO:0051703
data:
  {"annotated_genes":["SJAG_01253","SJAG_00239","SJAG_02380","SJAG_04720","SJAG_00910","SJAG_04723","SJAG_01975","SJAG_03484","SJAG_03473","SJAG_04191","SJAG_00926","SJAG_03802"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78954,80373,78370,71704],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000128"},{"annotations":[105502],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036349"},{"annotations":[108221,105503],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0060257"},{"annotations":[116101,118165,113376,110618,107865,110744],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1900735"}]},"cv_name":"biological_process","definition":"Any process in which an organism has an effect on an organism of the same species.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological_process","termid":"GO:0008150"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00239":null,"SJAG_00910":null,"SJAG_00926":null,"SJAG_01253":null,"SJAG_01975":null,"SJAG_02380":null,"SJAG_03473":null,"SJAG_03484":null,"SJAG_03802":null,"SJAG_04191":null,"SJAG_04720":null,"SJAG_04723":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"biological process involved in intraspecies interaction between organisms","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"intraspecies interaction between organisms","type":"exact"},{"name":"intraspecies interaction with other organisms","type":"exact"}],"termid":"GO:0051703","terms_by_termid":{"GO:0000128":null,"GO:0036349":null,"GO:0060257":null,"GO:1900735":null}}


id: GO:0018338
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of a protein amino acid by cinnamylation.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete protein amino acid cinnamylation (obsolete GO:0018338)","synonyms":[{"name":"protein amino acid cinnamylation","type":"exact"}],"termid":"GO:0018338"}


id: PATO:0001114
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001114 relative energy value (obsolete PATO:0001114)","termid":"PATO:0001114"}


id: GO:0031529
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a ruffle, a projection at the leading edge of a crawling cell.","definition_xrefs":["GOC:mah","PMID:10036235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection organization","termid":"GO:0120036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ruffle organization","synonyms":[{"name":"ruffle organisation","type":"exact"},{"name":"ruffle organization and biogenesis","type":"related"}],"termid":"GO:0031529"}


id: PBO:0074088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC26A4 antisense RNA 1","termid":"PBO:0074088"}


id: FYPO:0006540
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which actin cytoskeleton organization is abnormal during a cellular response to pheromone.","definition_xrefs":["PomBase:mah","GO:0030036"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton organization","termid":"FYPO:0004803"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0004803"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0004803"],"is_obsolete":false,"name":"abnormal actin cytoskeleton organization during cellular response to pheromone","synonyms":[{"name":"abnormal actin cytoskeleton organisation during cellular response to pheromone","type":"exact"}],"termid":"FYPO:0006540"}


id: PBO:0088798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane Nramp family manganese ion transmembrane transporter","termid":"PBO:0088798"}


id: PBO:0028009
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_during_meiotic_cell_cycle","termid":"PBO:0028009"}


id: PBO:0049387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTF3C6 pseudogene 3","termid":"PBO:0049387"}


id: GO:0051396
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the activity of the nerve growth factor (NGF) receptor.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of nerve growth factor receptor activity (obsolete GO:0051396)","synonyms":[{"name":"activation of nerve growth factor receptor activity","type":"narrow"},{"name":"positive regulation of NGF receptor activity","type":"exact"},{"name":"stimulation of nerve growth factor receptor activity","type":"narrow"},{"name":"up regulation of nerve growth factor receptor activity","type":"exact"},{"name":"up-regulation of nerve growth factor receptor activity","type":"exact"},{"name":"upregulation of nerve growth factor receptor activity","type":"exact"}],"termid":"GO:0051396"}


id: PBO:0003054
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.1.3.1","termid":"PBO:0003054"}


id: PATO:0001974
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's terminating in a round end, the centre of which is depressed.","definition_xrefs":["ISBN:0881923214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"blunt","termid":"PATO:0001950"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retuse","termid":"PATO:0001974"}


id: PBO:0081056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCHC-type containing 13","termid":"PBO:0081056"}


id: PBO:0049935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HHIP like 1","termid":"PBO:0049935"}


id: PBO:0077885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein adipocyte associated 1","termid":"PBO:0077885"}


id: SO:0000682
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000682 splicing_feature (obsolete SO:0000682)","termid":"SO:0000682"}


id: GO:0042865
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of the siderochrome pyochelin (2-(2-o-hydroxyphenyl-2-thiazolin-4-yl)-3-methylthiazolidine-4-carboxylic acid).","definition_xrefs":["PMID:6794030","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound catabolic process","termid":"GO:0019336"},{"relation_name":"is_a","term_name":"pyochelin metabolic process","termid":"GO:0042863"},{"relation_name":"is_a","term_name":"sulfur compound catabolic process","termid":"GO:0044273"},{"relation_name":"is_a","term_name":"siderophore catabolic process","termid":"GO:0046215"},{"relation_name":"is_a","term_name":"carboxylic acid catabolic process","termid":"GO:0046395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006790","GO:0008150","GO:0044281","GO:0019748"],"is_obsolete":false,"name":"pyochelin catabolic process","synonyms":[{"name":"pyochelin breakdown","type":"exact"},{"name":"pyochelin catabolism","type":"exact"},{"name":"pyochelin degradation","type":"exact"}],"termid":"GO:0042865"}


id: PBO:0045019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"divergent protein kinase domain 2A","termid":"PBO:0045019"}


id: GO:0042633
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cyclical phases of growth (anagen), regression (catagen), quiescence (telogen), and shedding (exogen) in the life of a hair; one of the collection or mass of filaments growing from the skin of an animal, and forming a covering for a part of the head or for any part or the whole of the body.","definition_xrefs":["PMID:12230507","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molting cycle","termid":"GO:0042303"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hair cycle","termid":"GO:0042633"}


id: GO:0009426
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the central rod of the bacterial-type flagellar basal body that is distal to the cell membrane; spans most of the distance between the inner and outer membranes.","definition_xrefs":["PMID:10572114","PMID:12624192","GOC:cilia","GOC:mtg_sensu","PMID:11133968"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"bacterial-type flagellum basal body, rod","termid":"GO:0030694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"bacterial-type flagellum basal body, distal rod","synonyms":[{"name":"flagellar basal body, distal rod","type":"exact"},{"name":"flagellin-based flagellum basal body, distal rod","type":"exact"}],"termid":"GO:0009426"}


id: PATO:0002449
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's being located toward the rear and mid-line surface of an organism relative to another entity.","definition_xrefs":["PATOC:WC"],"direct_ancestors":[{"relation_name":"is_a","term_name":"posterior to","termid":"PATO:0001633"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"posteromedial to","termid":"PATO:0002449"}


id: MONDO:0032903
data:
  {"annotated_genes":["SJAG_00875"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88539],"is_not":false,"summary":null,"term":"MONDO:0032903"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"arthrogryposis multiplex congenita","termid":"MONDO:0015168"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00875":null},"genotype_count":0,"is_obsolete":false,"name":"arthrogryposis multiplex congenita 4, neurogenic, with agenesis of the corpus callosum","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5231494","DOID:0080980","MEDGEN:1684706","OMIM:618766"],"synonyms":[{"name":"AMCNACC","type":"exact"},{"name":"Zain Syndrome","type":"related"},{"name":"arthrogryposis multiplex congenita, neurogenic, with agenesis of the corpus callosum","type":"exact"}],"termid":"MONDO:0032903","terms_by_termid":{"MONDO:0032903":null},"xrefs":{"Monarch":{"xref_id":"0032903"}}}


id: PBO:0031231
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_deacetylation","termid":"PBO:0031231"}


id: MONDO:0018746
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mucous membrane pemphigoid is a bullous dermatosis characterized clinically by blistering of the mucous membranes followed by scarring, and immunologically by IgG, IgA and/or C3 deposits on the epidermal basement membrane.","definition_xrefs":["Orphanet:46486"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune bullous skin disease","termid":"MONDO:0019337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005046"],"is_obsolete":false,"name":"mucous membrane pemphigoid","secondary_identifiers":["SCTID:34250006","NANDO:1200634","NCIT:C34907","SCTID:76092003","EFO:1000680","UMLS:C0030804","icd11.foundation:1456138933","MedDRA:10057052","MEDGEN:10619","ICD9:694.61","GARD:5913","DOID:11656","ICD9:694.6"],"synonyms":[{"name":"Mucosynechial pemphigoid","type":"exact"},{"name":"benign mucosal pemphigoid","type":"related"},{"name":"benign mucous Membrane pemphigoid","type":"exact"},{"name":"benign mucous membrane pemphigoid","type":"related"},{"name":"benign mucous membrane pemphigoid with ocular involvement","type":"related"},{"name":"cicatricial pemphigoid","type":"exact"},{"name":"cicatricial pemphigoid with ocular involvement","type":"related"},{"name":"mucosal pemphigoid","type":"exact"},{"name":"ocular pemphigoid","type":"related"},{"name":"ocular pemphigus","type":"related"}],"termid":"MONDO:0018746","xrefs":{"Monarch":{"xref_id":"0018746"}}}


id: MONDO:0007614
data:
  {"annotated_genes":["SJAG_04003"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88613],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010912"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"ocular motility disease","termid":"MONDO:0001584"},{"relation_name":"is_a","term_name":"myopathy of extraocular muscle","termid":"MONDO:0004746"},{"relation_name":"is_a","term_name":"progressive muscular dystrophy","termid":"MONDO:0016106"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04003":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"congenital fibrosis of extraocular muscles","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["icd11.foundation:887449084","SCTID:400946004","NORD:997","DOID:0080143","Orphanet:45358","UMLS:C1302995","GARD:12590","ICD9:728.2","MEDGEN:724506","OMIMPS:135700"],"synonyms":[{"name":"CFEOM1","type":"related"},{"name":"Congenital Fibrosis of the Extraocular Muscles","type":"exact"},{"name":"FEOM","type":"exact"},{"name":"Feom1 locus","type":"related"},{"name":"Tukel syndrome","type":"narrow"},{"name":"blepharoptosis with absent eye movements","type":"related"},{"name":"congenital fibrosis of the extraocular muscles","type":"exact"},{"name":"fibrosis of extraocular muscles, congenital","type":"exact"},{"name":"fibrosis of extraocular muscles, congenital, 1","type":"related"},{"name":"fibrosis of extraocular muscles, congenital, 3B","type":"related"},{"name":"fibrosis of extraocular muscles, congenital, type 1","type":"exact"},{"name":"ophthalmoplegia, congenital","type":"related"}],"termid":"MONDO:0007614","terms_by_termid":{"MONDO:0010912":null},"xrefs":{"Monarch":{"xref_id":"0007614"}}}


id: PBO:0065074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRICKLE2 antisense RNA 3","termid":"PBO:0065074"}


id: PR:000028936
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peroxiredoxin tpx1 hyperoxidized form in Schizosaccharomyces pombe. The oxidation occurs in under oxidative stress.","definition_xrefs":["PMID:22245228","PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxiredoxin tpx1","termid":"PR:000028932"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tpx1/HyperOx(C48)","pombase_gene_id":"SPCC576.03c","synonyms":[{"name":"PomBase_original_PRO_term_name: peroxiredoxin tpx1 hyperoxidized form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-tpx1/HyperOx+","type":"exact"},{"name":"tpx1/HyperOx(C48)","type":"exact"}],"termid":"PR:000028936"}


id: PBO:0070571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 37","termid":"PBO:0070571"}


id: GO:0061764
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of substances from late endosomes to lysosomes by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the lysosome.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endosome to lysosome transport via multivesicular body sorting pathway","termid":"GO:0032510"},{"relation_name":"is_a","term_name":"late endosome to vacuole transport","termid":"GO:0045324"},{"relation_name":"is_a","term_name":"late endosome to lysosome transport","termid":"GO:1902774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"late endosome to lysosome transport via multivesicular body sorting pathway","termid":"GO:0061764"}


id: GO:0005665
data:
  {"annotated_genes":["SJAG_00119","SJAG_00458","SJAG_01436","SJAG_04894","SJAG_02506","SJAG_02101","SJAG_04030","SJAG_02070","SJAG_04261","SJAG_01765","SJAG_01313","SJAG_01713","SJAG_04559"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72420,72822,74493,75057,76250,76955,77149,77311,78317,78740,79877,80732,114857],"is_not":false,"summary":null,"term":"GO:0005665"}]},"cv_name":"cellular_component","definition":"RNA polymerase II, one of three nuclear DNA-directed RNA polymerases found in all eukaryotes, is a multisubunit complex; typically it produces mRNAs, snoRNAs, and some of the snRNAs. Two large subunits comprise the most conserved portion including the catalytic site and share similarity with other eukaryotic and bacterial multisubunit RNA polymerases. The largest subunit of RNA polymerase II contains an essential carboxyl-terminal domain (CTD) composed of a variable number of heptapeptide repeats (YSPTSPS). The remainder of the complex is composed of smaller subunits (generally ten or more), some of which are also found in RNA polymerases I and III. Although the core is competent to mediate ribonucleic acid synthesis, it requires additional factors to select the appropriate template.","definition_xrefs":["GOC:mtg_sensu","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear DNA-directed RNA polymerase complex","termid":"GO:0055029"},{"relation_name":"part_of","term_name":"RNA polymerase II, holoenzyme","termid":"GO:0016591"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00119":null,"SJAG_00458":null,"SJAG_01313":null,"SJAG_01436":null,"SJAG_01713":null,"SJAG_01765":null,"SJAG_02070":null,"SJAG_02101":null,"SJAG_02506":null,"SJAG_04030":null,"SJAG_04261":null,"SJAG_04559":null,"SJAG_04894":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0005654","GO:0032991"],"is_obsolete":false,"name":"RNA polymerase II, core complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"DNA-directed RNA polymerase II, core complex","type":"exact"},{"name":"RNA polymerase II complex","type":"broad"},{"name":"RNAP II complex","type":"broad"}],"termid":"GO:0005665","terms_by_termid":{"GO:0005665":null}}


id: PBO:0076353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptotagmin 17","termid":"PBO:0076353"}


id: GO:0048799
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for an animal organ to attain its fully functional state. An organ is a tissue or set of tissues that work together to perform a specific function or functions.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"animal organ maturation","termid":"GO:0048799"}


id: PBO:0066333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RCC1 and BTB domain containing protein 2","termid":"PBO:0066333"}


id: MONDO:1011841
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"faded shaker, non-human animal","secondary_identifiers":["OMIA:000365"],"termid":"MONDO:1011841","xrefs":{"Monarch":{"xref_id":"1011841"}}}


id: PBO:0034636
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_kinetochore_during_vegetative_growth","termid":"PBO:0034636"}


id: PBO:0075591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine peptidase inhibitor, Kunitz type 3","termid":"PBO:0075591"}


id: MONDO:0007230
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Brachymorphism-onychodysplasia-dysphalangism (BOD) is a very rare malformation syndrome that is characterized by short stature, hypoplastic fifth digits with tiny dysplastic nails, facial dysmorphism with coarse features including a wide mouth and broad nose, and mild intellectual disability. It has been suggested that Coffin-Siris syndrome and BOD syndrome are perhaps allelic variants.","definition_xrefs":["Orphanet:1292"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"skeletal system disorder","termid":"MONDO:0005172"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Brachymorphism-onychodysplasia-dysphalangism syndrome","secondary_identifiers":["UMLS:C1862082","OMIM:113477","SCTID:720573009","GARD:918","MESH:C536242","MEDGEN:350585"],"synonyms":[{"name":"Brachymorphism onychodysplasia dysphalangism syndrome","type":"related"},{"name":"Brachymorphism-onychodysplasia-dysphalangism syndrome","type":"exact"},{"name":"Senior syndrome","type":"exact"},{"name":"bod syndrome","type":"exact"}],"termid":"MONDO:0007230","xrefs":{"Monarch":{"xref_id":"0007230"}}}


id: MONDO:0016283
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Leiomyosarcoma of the cervix uteri is a rare, malignant mesenchymal tumor of smooth muscle origin, macroscopically appearing as a large, poorly circumscribed mass, often protruding from the cervical canal or expanding it circumferentially. The most common presenting symptoms are vaginal discharge or bleeding, pain in the lower abdomen and a bulky cervical mass. There is a reported tendency to metastatsize hematogenously, especially to the lungs, peritoneum, bones and the liver.","definition_xrefs":["Orphanet:213807"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leiomyosarcoma","termid":"MONDO:0005058"},{"relation_name":"is_a","term_name":"sarcoma of cervix uteri","termid":"MONDO:0016280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"leiomyosarcoma of the cervix uteri","secondary_identifiers":["GARD:20495","MEDGEN:927349","NCIT:C128047","SCTID:763771009","ICD10CM:C53.0","ONCOTREE:CELI","UMLS:C4289817"],"synonyms":[{"name":"CELI","type":"related"},{"name":"cervical leiomyosarcoma","type":"exact"},{"name":"leiomyosarcoma of uterine cervix","type":"exact"},{"name":"uterine cervix leiomyosarcoma","type":"exact"}],"termid":"MONDO:0016283","xrefs":{"Monarch":{"xref_id":"0016283"}}}


id: PBO:0071688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37 pseudogene 20","termid":"PBO:0071688"}


id: PBO:0012241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial pyrimidine nucleotide transporter (predicted)","termid":"PBO:0012241"}


id: GO:0051286
data:
  {"annotated_genes":["SJAG_00993","SJAG_02838","SJAG_03536","SJAG_04828","SJAG_02104","SJAG_00140","SJAG_01268","SJAG_02716","SJAG_01171","SJAG_01697","SJAG_03246","SJAG_02760","SJAG_00521","SJAG_05001","SJAG_01071","SJAG_02695","SJAG_03655","SJAG_04666","SJAG_01660","SJAG_02380","SJAG_00101","SJAG_04167","SJAG_00773","SJAG_02338","SJAG_02228","SJAG_03753","SJAG_00445","SJAG_01993","SJAG_02320","SJAG_05285","SJAG_03915","SJAG_04509","SJAG_01448","SJAG_04901","SJAG_00851","SJAG_04522","SJAG_01384","SJAG_02412","SJAG_04771","SJAG_03126","SJAG_04358","SJAG_01017","SJAG_00677","SJAG_03380","SJAG_03606","SJAG_00216","SJAG_03705","SJAG_02087","SJAG_04905","SJAG_02943","SJAG_02004","SJAG_01353","SJAG_01388","SJAG_01718","SJAG_03625","SJAG_03746","SJAG_01118","SJAG_05264","SJAG_00805","SJAG_04668","SJAG_04787","SJAG_04609","SJAG_02729","SJAG_02657","SJAG_01770","SJAG_04706","SJAG_04980","SJAG_02222","SJAG_02169","SJAG_04960","SJAG_02241","SJAG_01898","SJAG_00514","SJAG_00152","SJAG_02957","SJAG_02968","SJAG_00063","SJAG_01345","SJAG_04315","SJAG_03011","SJAG_00596","SJAG_04258","SJAG_00700","SJAG_00661","SJAG_00845","SJAG_02045","SJAG_04690","SJAG_00333","SJAG_03119","SJAG_02258","SJAG_04765","SJAG_04829","SJAG_01631","SJAG_01288","SJAG_03145","SJAG_01290","SJAG_02202","SJAG_02062","SJAG_04479","SJAG_04931","SJAG_04724","SJAG_00610","SJAG_00236","SJAG_02916","SJAG_01794","SJAG_01456","SJAG_02152","SJAG_02333","SJAG_04058","SJAG_04776","SJAG_01738","SJAG_02132","SJAG_01003","SJAG_04723","SJAG_00424","SJAG_04462","SJAG_03453","SJAG_02989","SJAG_00268","SJAG_04637","SJAG_02602","SJAG_04566","SJAG_02753","SJAG_03172","SJAG_03643","SJAG_00279","SJAG_01215","SJAG_01894","SJAG_02486","SJAG_00030","SJAG_02379","SJAG_00185","SJAG_02700","SJAG_03486","SJAG_00368","SJAG_01732","SJAG_05290","SJAG_01373","SJAG_03444","SJAG_02277","SJAG_02166","SJAG_04673","SJAG_01114","SJAG_03086","SJAG_00280","SJAG_04591","SJAG_01835","SJAG_00162","SJAG_01855","SJAG_03608","SJAG_03637","SJAG_01189","SJAG_03229","SJAG_00434","SJAG_00575","SJAG_00587","SJAG_04878","SJAG_02368","SJAG_02718","SJAG_03760","SJAG_00397","SJAG_01885","SJAG_00331","SJAG_03353","SJAG_02572","SJAG_01925","SJAG_01095","SJAG_00938","SJAG_00589","SJAG_03646","SJAG_02924","SJAG_01437","SJAG_04050","SJAG_00870","SJAG_00724","SJAG_04595","SJAG_04100","SJAG_04012","SJAG_00667","SJAG_00104","SJAG_02797","SJAG_03379","SJAG_03938","SJAG_02566","SJAG_03375","SJAG_00028","SJAG_02351","SJAG_02684","SJAG_00317","SJAG_01167","SJAG_02075","SJAG_01799","SJAG_02392","SJAG_00137","SJAG_00652","SJAG_02114","SJAG_04703","SJAG_01964","SJAG_01754","SJAG_02581","SJAG_02278","SJAG_04051","SJAG_00546","SJAG_02331","SJAG_01978","SJAG_02576","SJAG_01888","SJAG_04044","SJAG_04624","SJAG_03748","SJAG_03754","SJAG_04982","SJAG_04001","SJAG_03331","SJAG_04935","SJAG_04455","SJAG_01983","SJAG_03025","SJAG_01453","SJAG_00018","SJAG_03432","SJAG_02511","SJAG_05198","SJAG_00264","SJAG_02322","SJAG_04620","SJAG_03581","SJAG_01350","SJAG_04322","SJAG_00800","SJAG_04268","SJAG_03596","SJAG_03357","SJAG_01943","SJAG_01196","SJAG_05179","SJAG_01787","SJAG_04781","SJAG_01360","SJAG_04887"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[58677,65810,89316,89854,90106,90124,90165,90489,90825,91487,91583,91702,92088,92353,92354,92355,92356,92357,92358,92359,92360,92361,92842,93043,93363,93484,93999,94150,94159,94221,94428,94922,95542,95624,96280,96294,96855,96903,97161,97608,98945,99474,100152,100744,100834,101213,101516,101609,102135,102325,102857,102889,103294,103416,103693,104168,104686,104788,105256,105472,106482,106574,106685,106945,107124,107139,107306,107581,108242,108454,108660,109154,109195,110036,110273,110346,111320,111360,111506,111514,112157,113370,113428,113471,113495,113675,114476,115006,115219,115455,115671,115674,115783,115841,116184,117663,118100,118755,118856,119531,119754,120374,120375,120572,120794,120834,120912,120921,121023,121293,121294,121661],"is_not":false,"summary":null,"term":"GO:0051286"},{"annotations":[116050,97274,89387,104602,90332,92642,89371,95751,105192,101827,93262,108981,114304,115081,92951,100757,106602,113653,98220,92717,101667,110314,89919,105432,90016,98889,105636,109005,93794,98780,99643,104582,98182,91208,97113,97752,100902,101241,97320,104911,105688,108821,112091,95449,102105,112853,113359,113864],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051285"},{"annotations":[118499,108065,96475,92621,112746,113947,92592,89742,118189,119928,117827,71815,120678,91732,116167,115050,94300,120876],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902716"},{"annotations":[102864,113948,119929,112747],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140472"},{"annotations":[108559],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0106186"},{"annotations":[77233,114167,121649,90336,102108,95769,121651,121645,121647,118586,96846,101689,121643,97325,105821,121653],"is_not":false,"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