# terms

id: GO:1902318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any synthesis of RNA primer that is involved in nuclear cell cycle DNA replication.","definition_xrefs":["GOC:TermGenie","GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete synthesis of RNA primer involved in nuclear cell cycle DNA replication (obsolete GO:1902318)","synonyms":[{"name":"DNA replication, synthesis of RNA primer involved in DNA replication during S phase","type":"related"},{"name":"DNA replication, synthesis of RNA primer involved in DNA replication involved in S phase","type":"exact"},{"name":"DNA replication, synthesis of RNA primer involved in DNA replication involved in S-phase","type":"exact"},{"name":"replication priming involved in DNA replication during S phase","type":"related"},{"name":"replication priming involved in DNA replication involved in S phase","type":"related"},{"name":"replication priming involved in DNA replication involved in S-phase","type":"related"},{"name":"replication priming involved in nuclear cell cycle DNA replication","type":"related"}],"termid":"GO:1902318"}


id: PBO:0002154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT III complex subunit Vps32","termid":"PBO:0002154"}


id: MONDO:0043179
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piepkorn karp hickok syndrome","secondary_identifiers":["UMLS:C2931016","MESH:C535774","MEDGEN:418962"],"synonyms":[{"name":"short ribs, polysyndactyly, cranial synostosis, cleft palate cardiovascular and urogenital anomalies and severe ossification defect","type":"related"}],"termid":"MONDO:0043179","xrefs":{"Monarch":{"xref_id":"0043179"}}}


id: PBO:0047597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FHAD1 antisense RNA 1","termid":"PBO:0047597"}


id: PBO:0040312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase F1 subunit alpha pseudogene 4","termid":"PBO:0040312"}


id: PBO:0053158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LDLR antisense RNA 1","termid":"PBO:0053158"}


id: MONDO:0019390
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Susac syndrome (SS) is a rare disorder characterized by the triad of central nervous system (CNS) dysfunction, branch retinal artery occlusions (BRAOs) and sensorineural hearing loss (SNHL). It is presumably due to autoimmune-mediated occlusions of microvessels in the CNS, the retina, and the inner ear.","definition_xrefs":["Orphanet:838"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"autoimmune disease","termid":"MONDO:0007179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"Susac syndrome","secondary_identifiers":["SCTID:702575003","MESH:D055955","GARD:7713","MedDRA:10071573","EFO:1001856","NORD:1747","icd11.foundation:1292480458","ICD9:348.39","MEDGEN:439270","UMLS:C2717757","NCIT:C116363"],"synonyms":[{"name":"RED-M","type":"exact"},{"name":"Retinocochleocerebral vasculopathy","type":"exact"},{"name":"SICRET (small infarction of cochlear, retinal, and encephalic tissue) syndrome","type":"related"},{"name":"SICRET syndrome","type":"exact"},{"name":"retinopathy-encephalopathy-deafness associated with microangiopathy","type":"exact"},{"name":"small infarctions of cochlear, retinal and encephalic tissue","type":"exact"}],"termid":"MONDO:0019390","xrefs":{"Monarch":{"xref_id":"0019390"}}}


id: PBO:0030130
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_potassium_level","termid":"PBO:0030130"}


id: MOD:00970
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:37"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"delta-hydroxy-allysine (Lys)","termid":"MOD:00970"}


id: GO:0000016
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: lactose + H2O = D-glucose + D-galactose.","definition_xrefs":["PMID:12023280"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0016787","GO:0016798","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"lactase activity","secondary_identifiers":["EC:3.2.1.108","Reactome:R-HSA-5658001","RHEA:10076","MetaCyc:BETAGALACTOSID-RXN","Reactome:R-HSA-189062"],"synonyms":[{"name":"lactose galactohydrolase activity","type":"exact"}],"termid":"GO:0000016"}


id: PBO:0082858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factors for the GTPase Ypt1, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); hydrophilic homodimeric protein that acts in conjunction with SNARE proteins in targeting and fusion of ER to Golgi transport vesicles","termid":"PBO:0082858"}


id: GO:1902391
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of N-terminal peptidyl-serine acetylation.","definition_xrefs":["PMID:23912279","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of N-terminal peptidyl-serine acetylation (obsolete GO:1902391)","synonyms":[{"name":"activation of N-terminal peptidyl-serine acetylation","type":"narrow"},{"name":"up regulation of N-terminal peptidyl-serine acetylation","type":"exact"},{"name":"up-regulation of N-terminal peptidyl-serine acetylation","type":"exact"},{"name":"upregulation of N-terminal peptidyl-serine acetylation","type":"exact"}],"termid":"GO:1902391"}


id: PBO:0029166
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_phosphorylation","termid":"PBO:0029166"}


id: MONDO:0001257
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"retinal vascular disorder","termid":"MONDO:0002311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"retinal microaneurysm","secondary_identifiers":["SCTID:34037000","ICD9:362.14","DOID:11295","UMLS:C0154834","MEDGEN:472899"],"termid":"MONDO:0001257","xrefs":{"Monarch":{"xref_id":"0001257"}}}


id: PBO:0112489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane protein, palmitoylated, Uvi15","termid":"PBO:0112489"}


id: MONDO:1011740
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"integumentary system disorder, non-human animal","termid":"MONDO:1011328"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary seborrhea-oleosa, non-human animal","secondary_identifiers":["OMIA:000822"],"termid":"MONDO:1011740","xrefs":{"Monarch":{"xref_id":"1011740"}}}


id: PBO:0036299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial TOM complex subunit Tom6 (predicted)","termid":"PBO:0036299"}


id: GO:0014896
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The muscle system process that results in enlargement or overgrowth of all or part of a muscle organ due to an increase in the size of its muscle cells. Physiological hypertrophy is a normal process during development (it stops in cardiac muscle after adolescence) and can also be brought on in response to demand. In athletes cardiac and skeletal muscles undergo hypertrophy stimulated by increasing muscle activity on exercise. Smooth muscle cells in the uterus undergo hypertrophy during pregnancy.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscle system process","termid":"GO:0003012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"muscle hypertrophy","secondary_identifiers":["Wikipedia:Muscle_hypertrophy"],"termid":"GO:0014896"}


id: PBO:0005691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate-cysteine ligase regulatory subunit (predicted)","termid":"PBO:0005691"}


id: GO:0034607
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The sharp ventral turn performed by the male as he approaches either the hermaphrodite head or tail, whilst trying to locate his partner's vulva. Turning occurs via a sharp ventral coil of the male's tail.","definition_xrefs":["WB_REF:WBPaper00002109","PMID:18050467"],"direct_ancestors":[{"relation_name":"is_a","term_name":"male mating behavior","termid":"GO:0060179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"turning behavior involved in mating","synonyms":[{"name":"turning behavior during mating","type":"exact"}],"termid":"GO:0034607"}


id: MONDO:0007153
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arteries, anomalies of","secondary_identifiers":["UMLS:C1876179","OMIM:108000","MEDGEN:360295"],"synonyms":[{"name":"arteries, anomalies of","type":"exact"}],"termid":"MONDO:0007153","xrefs":{"Monarch":{"xref_id":"0007153"}}}


id: GO:0018674
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (4S)-limonene + O2 + reduced [NADPH--hemoprotein reductase] = (1S,6R)-isopiperitenol + H+ + H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["RHEA:15129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"},{"relation_name":"is_a","term_name":"limonene monooxygenase activity","termid":"GO:0019113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"(S)-limonene 3-monooxygenase activity","secondary_identifiers":["MetaCyc:--LIMONENE-3-MONOOXYGENASE-RXN","EC:1.14.14.99","KEGG_REACTION:R02469","UM-BBD_reactionID:r0739"],"synonyms":[{"name":"(-)-limonene 3-hydroxylase activity","type":"related"},{"name":"(-)-limonene 3-monooxygenase activity","type":"exact"},{"name":"(-)-limonene,NADPH:oxygen oxidoreductase (3-hydroxylating) activity","type":"related"},{"name":"(S)-limonene,NADPH:oxygen oxidoreductase (3-hydroxylating)","type":"related"},{"name":"limonene 3-hydroxylase activity","type":"exact"}],"termid":"GO:0018674"}


id: MONDO:0017685
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin B12-responsive methylmalonic acidemia","termid":"MONDO:0017214"},{"relation_name":"is_a","term_name":"methylmalonic aciduria and/or homocystinuria, cblD type","termid":"MONDO:0100463"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"vitamin B12-responsive methylmalonic acidemia, type cblDv2","secondary_identifiers":["GARD:17391","MEDGEN:376388","Orphanet:308442","UMLS:C1848554"],"synonyms":[{"name":"vitamin B12-responsive methylmalonic aciduria, type cblDv2","type":"exact"}],"termid":"MONDO:0017685","xrefs":{"Monarch":{"xref_id":"0017685"}}}


id: PBO:0075392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sp5 transcription factor","termid":"PBO:0075392"}


id: MONDO:0043247
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by upper gastrointestinal tract bleeding caused by longitudinal mucosal tears in the gastroesophageal junction. The tears result from retching or forceful coughing. It was initially described in alcoholics.","definition_xrefs":["NCIT:C84881"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hemorrhagic disease","termid":"MONDO:0002243"},{"relation_name":"excluded_subClassOf","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mallory-Weiss syndrome","secondary_identifiers":["UMLS:C0024633","MESH:D008309","MEDGEN:44265","SCTID:35265002"],"synonyms":[{"name":"Lacerations-gastroesophageal junction, mucosal","type":"related"},{"name":"Lacerations-gastroesophageal junctions, mucosal","type":"related"},{"name":"Mallory Weiss laceration","type":"related"},{"name":"Mallory Weiss syndrome","type":"related"},{"name":"Mallory Weiss tear","type":"related"},{"name":"Mallory-Weiss laceration","type":"related"},{"name":"Mallory-Weiss syndrome","type":"exact"},{"name":"Mallory-Weiss tear","type":"related"},{"name":"gastro-esophageal laceration-hemorrhage syndrome","type":"related"},{"name":"gastroesophageal laceration haemorrhage","type":"related"},{"name":"gastroesophageal laceration hemorrhage","type":"related"},{"name":"gastroesophageal laceration-hemorrhage","type":"related"},{"name":"gastroesophageal laceration-hemorrhage syndrome","type":"related"},{"name":"gastroesophageal laceration-hemorrhages","type":"related"},{"name":"junction, mucosal Lacerations-gastroesophageal","type":"related"},{"name":"junctions, mucosal Lacerations-gastroesophageal","type":"related"},{"name":"laceration, Mallory-Weiss","type":"related"},{"name":"laceration-hemorrhage, gastroesophageal","type":"related"},{"name":"laceration-hemorrhages, gastroesophageal","type":"related"},{"name":"mucosal Lacerations gastroesophageal junction","type":"related"},{"name":"mucosal Lacerations-gastroesophageal junction","type":"related"},{"name":"mucosal Lacerations-gastroesophageal junctions","type":"related"},{"name":"mucosal lacerations - gastroesophageal junction","type":"related"},{"name":"syndrome, Mallory-Weiss","type":"related"}],"termid":"MONDO:0043247","xrefs":{"Monarch":{"xref_id":"0043247"}}}


id: GO:0009415
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to acid chemical","termid":"GO:0001101"},{"relation_name":"is_a","term_name":"response to abiotic stimulus","termid":"GO:0009628"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to water","synonyms":[{"name":"response to water stimulus","type":"exact"}],"termid":"GO:0009415"}


id: PBO:0059228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maestro heat like repeat family member 9","termid":"PBO:0059228"}


id: FYPO:0000556
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which re-entry into the mitotic cell cycle after pheromone arrest does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal re-entry into mitotic cell cycle after pheromone arrest","termid":"FYPO:0000555"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000002","FYPO:0000298","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished re-entry into mitotic cell cycle after pheromone arrest","synonyms":[{"name":"absent recovery from pheromone-induced cell cycle arrest","type":"exact"},{"name":"re-entry into mitotic cell cycle after pheromone arrest abolished","type":"exact"},{"name":"recovery from pheromone-induced cell cycle arrest abolished","type":"exact"},{"name":"recovery from pheromone-induced cell cycle arrest: absent","type":"related"}],"termid":"FYPO:0000556"}


id: PATO:0001336
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A biological sex quality inhering in an individual whose sex is unknown.","definition_xrefs":["MGED:MGED"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001336 unknown sex (obsolete PATO:0001336)","termid":"PATO:0001336"}


id: PBO:0027069
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_transport","termid":"PBO:0027069"}


id: GO:0044672
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multifunctional enzyme complex composed of five different polypeptides that catalyzes the decarbonylation of acetyl-CoA, cleaves the C-C and C-S bonds in the acetyl moiety of acetyl-CoA, oxidizes the carbonyl group to CO2 and transfers the methyl group to tetrahydrosarcinapterin. These reactions are important for methanogenesis.","definition_xrefs":["PMID:8955306","PMID:11607176","PMID:7693685","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"acetyl-CoA decarbonylase/synthase-carbon monoxide dehydrogenase complex","synonyms":[{"name":"CO dehydrogenase complex","type":"broad"},{"name":"CO dehydrogenase/acetyl-CoA synthase complex","type":"exact"},{"name":"CODH","type":"broad"},{"name":"CODH/ACS complex","type":"exact"},{"name":"carbon monoxide dehydrogenase","type":"broad"},{"name":"carbon-monoxide:(acceptor) oxidoreductase complex","type":"broad"}],"termid":"GO:0044672"}


id: GO:0097175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 1,6-anhydro-N-acetylmuramic acid, the 1,6-anhydro-derivative of N-acetyl-beta-muramic acid.","definition_xrefs":["PMID:15901686","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"},{"relation_name":"is_a","term_name":"1,6-anhydro-N-acetyl-beta-muramic acid metabolic process","termid":"GO:0097174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"1,6-anhydro-N-acetyl-beta-muramic acid catabolic process","synonyms":[{"name":"1,6-anhydro-N-acetyl-beta-muramate breakdown","type":"exact"},{"name":"1,6-anhydro-N-acetyl-beta-muramate catabolic process","type":"exact"},{"name":"1,6-anhydro-N-acetyl-beta-muramate catabolism","type":"exact"},{"name":"1,6-anhydro-N-acetyl-beta-muramate degradation","type":"exact"},{"name":"1,6-anhydro-N-acetyl-beta-muramic acid breakdown","type":"exact"},{"name":"1,6-anhydro-N-acetyl-beta-muramic acid catabolism","type":"exact"},{"name":"1,6-anhydro-N-acetyl-beta-muramic acid degradation","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramate breakdown","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramate catabolic process","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramate catabolism","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramate degradation","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramic acid breakdown","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramic acid catabolic process","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramic acid catabolism","type":"exact"},{"name":"1,6-anhydro-N-acetylmuramic acid degradation","type":"exact"}],"termid":"GO:0097175"}


id: GO:1902057
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving (25S)-Delta(4)-dafachronate.","definition_xrefs":["PMID:20178781","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid metabolic process","termid":"GO:0008202"},{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"},{"relation_name":"is_a","term_name":"ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"(25S)-Delta(4)-dafachronate metabolic process","synonyms":[{"name":"(25S)-Delta(4)-dafachronate metabolism","type":"exact"}],"termid":"GO:1902057"}


id: PBO:0043921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliary rootlet coiled-coil, rootletin family member 2","termid":"PBO:0043921"}


id: FYPO:0004465
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is normal (i.e. indistinguishable from wild type) during a cellular response to camptothecin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during vegetative growth","termid":"FYPO:0000776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal protein phosphorylation during cellular response to camptothecin","synonyms":[{"name":"normal protein phosphorylation during cellular response to CPT","type":"exact"},{"name":"normal protein phosphorylation during cellular response to camptothecin during mitotic cell cycle","type":"related"},{"name":"normal protein phosphorylation during cellular response to camptothecin during vegetative growth","type":"exact"}],"termid":"FYPO:0004465"}


id: MONDO:0017018
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Isolated pauciimmune pulmonary capillaritis is a small vessel vasculitis restricted to the lungs that may induce diffuse alveolar hemorrhage with dyspnea, anemia, chest pain, hemoptysis, bilateral and diffuse alveolar infiltrates at chest X-rays, without any underlying systemic disease. ANCA are frequently positive but could be negative.","definition_xrefs":["Orphanet:264691"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interstitial lung disease","termid":"MONDO:0015925"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isolated pulmonary capillaritis","secondary_identifiers":["ICD9:448.9","icd11.foundation:1610022220","icd11.foundation:1607123556","SCTID:707436001","MEDGEN:842738","GARD:20924","UMLS:C3873357"],"termid":"MONDO:0017018","xrefs":{"Monarch":{"xref_id":"0017018"}}}


id: GO:0019795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of any amino acid that does not normally occur as a constituent residue of proteins.","definition_xrefs":["GOC:ma"],"gene_count":0,"genotype_count":0,"name":"obsolete nonprotein amino acid biosynthetic process (obsolete GO:0019795)","synonyms":[{"name":"nonprotein amino acid anabolism","type":"exact"},{"name":"nonprotein amino acid biosynthesis","type":"exact"},{"name":"nonprotein amino acid biosynthetic process","type":"exact"},{"name":"nonprotein amino acid formation","type":"exact"},{"name":"nonprotein amino acid synthesis","type":"exact"}],"termid":"GO:0019795"}


id: PBO:0057013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 103a-2","termid":"PBO:0057013"}


id: PBO:0030239
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_basal_transcription_from_CDRE_promoter_(obsolete_FYPO:0001459)","termid":"PBO:0030239"}


id: FYPO:0002577
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene, and may normally bind DNA, protein, or both in chromatin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin binding","termid":"FYPO:0002576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"decreased chromatin binding","synonyms":[{"name":"reduced chromatin binding","type":"exact"}],"termid":"FYPO:0002577"}


id: PBO:0004267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin C-terminal hydrolase Ubp9","termid":"PBO:0004267"}


id: FYPO:0006151
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of SUMO-specific protease activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal peptidase activity","termid":"FYPO:0000666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000661","FYPO:0000654","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"abnormal SUMO-specific protease activity","termid":"FYPO:0006151"}


id: GO:0039718
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cytoplasmic viral factory that consists of a double-membrane bound vesicle. Has a diameter of 200-300nm and is derived from the endoplasmic reticulum or Golgi apparatus. Produced by Picornaviridae, Nidovirales, Arteriviridae and Coronaviridae.","definition_xrefs":["VZ:1951","PMID:22440839"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic viral factory","termid":"GO:0039714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"double membrane vesicle viral factory","synonyms":[{"name":"DMV viral factory","type":"exact"}],"termid":"GO:0039718"}


id: GO:0033053
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving D-glutamine, the D-enantiomer of the amino acid glutamine, i.e. (2R)-2,5-diamino-5-oxopentanoic acid.","definition_xrefs":["GOC:jsg","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamine metabolic process","termid":"GO:0006541"},{"relation_name":"is_a","term_name":"D-amino acid metabolic process","termid":"GO:0046416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"D-glutamine metabolic process","synonyms":[{"name":"D-glutamine metabolism","type":"exact"}],"termid":"GO:0033053"}


id: PBO:0082796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the U5 snRNP complex; required for splicing of U3 precursors; originally described as a splicing factor specifically required for splicing pre-mRNA of the MATa1 cistron","termid":"PBO:0082796"}


id: GO:0043744
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + N-acetyl-L-2-aminoadipate = ADP + N-acetyl-L-2-aminoadipate 6-phosphate.","definition_xrefs":["RHEA:41944","PMID:25392000","PMID:26966182"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, carboxyl group as acceptor","termid":"GO:0016774"},{"relation_name":"is_a","term_name":"amino acid kinase activity","termid":"GO:0019202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016301"],"is_obsolete":false,"name":"N2-acetyl-L-aminoadipate kinase activity","secondary_identifiers":["GO:0043868","MetaCyc:RXN-5182"],"synonyms":[{"name":"N-acetyl-L-aminoadipate 5-phosphotransferase activity","type":"exact"},{"name":"N-acetylaminoadipate kinase activity","type":"exact"},{"name":"[LysW]-aminoadipate kinase","type":"related"},{"name":"acetylaminoadipate kinase activity","type":"exact"}],"termid":"GO:0043744"}


id: MONDO:0013136
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary hypotrichosis with recurrent skin vesicles is a very rare inherited hair loss disorder described in a family and characterized by sparse, fragile or absent hair on the scalp, eyebrows, eyelashes, axillae and rest of the body, associated with vesicle formation on various parts of the scalp and body which regularly burst and release watery fluid.","definition_xrefs":["Orphanet:217407"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"alopecia","termid":"MONDO:0004907"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hereditary hypotrichosis with recurrent skin vesicles","secondary_identifiers":["GARD:17124","UMLS:C2751292","MESH:C567751","MEDGEN:442697","SCTID:724350009","OMIM:613102"],"synonyms":[{"name":"hereditary hypotrichosis with recurrent skin vesicles","type":"exact"},{"name":"hypotrichosis and recurrent skin vesicles","type":"related"}],"termid":"MONDO:0013136","xrefs":{"Monarch":{"xref_id":"0013136"}}}


id: GO:0002019
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which angiotensin directly modulates the rate of urine output by the kidney.","definition_xrefs":["GOC:tb","GOC:mtg_cardio","ISBN:0721643949","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of blood volume by renin-angiotensin","termid":"GO:0002016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of renal output by angiotensin","synonyms":[{"name":"angiotensin mediated control of renal output","type":"related"},{"name":"angiotensin mediated regulation of renal output","type":"exact"},{"name":"angiotensin-mediated regulation of renal output","type":"exact"}],"termid":"GO:0002019"}


id: MONDO:0056803
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease that has its basis in the disruption of sulfur compound metabolic process.","definition_xrefs":["MONDO:patterns/disrupts_process"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mineral metabolism disease","termid":"MONDO:0000226"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"sulfur metabolism disease","secondary_identifiers":["SCTID:123809005","MEDGEN:688004","UMLS:C1263724"],"synonyms":[{"name":"disorder of sulfur compound metabolic process","type":"exact"},{"name":"disorder of sulfur metabolic process","type":"exact"},{"name":"disorder of sulfur metabolism","type":"exact"},{"name":"disorder of sulphur compound metabolic process","type":"exact"},{"name":"disorder of sulphur metabolic process","type":"exact"},{"name":"disorder of sulphur metabolism","type":"exact"},{"name":"sulfur compound metabolic process disease","type":"exact"},{"name":"sulphur compound metabolic process disease","type":"exact"}],"termid":"MONDO:0056803","xrefs":{"Monarch":{"xref_id":"0056803"}}}


id: PBO:0002641
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.1.71","termid":"PBO:0002641"}


id: GO:0060379
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a cardiac myoblast. A cardiac myoblast is a precursor cell that has been committed to a cardiac muscle cell fate but retains the ability to divide and proliferate throughout life.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardioblast differentiation","termid":"GO:0010002"},{"relation_name":"is_a","term_name":"myoblast differentiation","termid":"GO:0045445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac muscle cell myoblast differentiation","synonyms":[{"name":"cardiac myoblast differentiation","type":"related"},{"name":"myocardial precursor cell differentiation","type":"exact"}],"termid":"GO:0060379"}


id: PBO:0070877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L15 pseudogene 8","termid":"PBO:0070877"}


id: MONDO:0001024
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A plague in which the bacteria have infected the lungs.","direct_ancestors":[{"relation_name":"is_a","term_name":"lung disorder","termid":"MONDO:0005275"},{"relation_name":"is_a","term_name":"plague","termid":"MONDO:0019095"},{"relation_name":"is_a","term_name":"respiratory tract infectious disorder","termid":"MONDO:0024355"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pneumonic plague","secondary_identifiers":["DOID:10398","icd11.foundation:1983098110","ICD9:020.3","ICD9:020.4","ICD9:020.5","MEDGEN:105580","SCTID:35339003","UMLS:C0524688","ICD10CM:A20.2"],"synonyms":[{"name":"primary pneumonic plague","type":"narrow"},{"name":"secondary pneumonic plague","type":"narrow"}],"termid":"MONDO:0001024","xrefs":{"Monarch":{"xref_id":"0001024"}}}


id: PBO:0067029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 42, pseudogene","termid":"PBO:0067029"}


id: PBO:0111351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small subunit processome, U3 snoRNP-associated protein Utp21","termid":"PBO:0111351"}


id: PBO:0084644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Microtubule effector required for tubulin heterodimer formation; binds alpha-tubulin, required for normal microtubule function, null mutant exhibits cold-sensitive microtubules and sensitivity to benomyl","termid":"PBO:0084644"}


id: GO:0033937
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endohydrolysis of the beta-ketopyranosidic linkages of 3-deoxy-D-manno-2-octulosonate in capsular polysaccharides.","definition_xrefs":["EC:3.2.1.124"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0016798","GO:0003674"],"is_obsolete":false,"name":"3-deoxy-2-octulosonidase activity","secondary_identifiers":["MetaCyc:3.2.1.124-RXN"],"synonyms":[{"name":"2-keto-3-deoxyoctonate hydrolase activity","type":"related"},{"name":"capsular-polysaccharide 3-deoxy-D-manno-2-octulosonohydrolase activity","type":"related"},{"name":"octulofuranosylono hydrolase activity","type":"related"},{"name":"octulopyranosylonohydrolase activity","type":"related"},{"name":"octulosylono hydrolase activity","type":"related"}],"termid":"GO:0033937"}


id: PBO:0080992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 24","termid":"PBO:0080992"}


id: PBO:0047022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A25, pseudogene","termid":"PBO:0047022"}


id: MONDO:0012768
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"prostate cancer, hereditary","termid":"MONDO:0700275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"prostate cancer, hereditary, 11","secondary_identifiers":["OMIM:611955","UMLS:C2677773","GARD:15536","MESH:C567449","MEDGEN:394363"],"synonyms":[{"name":"HPC11","type":"exact"},{"name":"prostate cancer, hereditary, 11","type":"exact"}],"termid":"MONDO:0012768","xrefs":{"Monarch":{"xref_id":"0012768"}}}


id: FYPO:0006290
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is normal (i.e. indistinguishable from wild type) during S phase of the mitotic cell cycle and during a cellular response to hydroxyurea.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during cellular response to hydroxyurea","termid":"FYPO:0002099"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal protein phosphorylation during mitotic S phase during cellular response to hydroxyurea","synonyms":[{"name":"normal protein phosphorylation during S phase during cellular response to hydroxyurea during vegetative growth","type":"exact"},{"name":"normal protein phosphorylation during cellular response to hydroxyurea during S phase of mitotic cell cycle","type":"exact"}],"termid":"FYPO:0006290"}


id: MONDO:0006404
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, highly aggressive carcinoma that arises from the salivary gland, predominantly the parotid gland. It is characterized by the presence of large pleomorphic malignant cells with abundant cytoplasm. Patients usually present with a rapidly growing mass.","definition_xrefs":["NCIT:C35735"],"direct_ancestors":[{"relation_name":"is_a","term_name":"salivary gland carcinoma","termid":"MONDO:0000521"},{"relation_name":"is_a","term_name":"large cell carcinoma","termid":"MONDO:0005232"},{"relation_name":"is_a","term_name":"undifferentiated carcinoma","termid":"MONDO:0005617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"salivary gland large cell carcinoma","secondary_identifiers":["UMLS:C2111671","EFO:1000517","MEDGEN:810975"],"synonyms":[{"name":"large cell salivary gland carcinoma","type":"exact"},{"name":"large cell undifferentiated salivary gland carcinoma","type":"exact"},{"name":"saliva-secreting gland large cell carcinoma","type":"exact"},{"name":"salivary gland large cell carcinoma","type":"exact"}],"termid":"MONDO:0006404","xrefs":{"Monarch":{"xref_id":"0006404"}}}


id: MONDO:0005836
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary or metastatic malignant neoplasm involving the male reproductive system. Representative examples include prostate carcinoma, penile carcinoma, testicular seminoma, and testicular embryonal carcinoma.","definition_xrefs":["NCIT:C8561"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive system cancer","termid":"MONDO:0002149"},{"relation_name":"is_a","term_name":"male reproductive system neoplasm","termid":"MONDO:0024582"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"male reproductive organ cancer","secondary_identifiers":["MESH:D005834","MEDGEN:102279","UMLS:C0153606","ICD9:187.9","SCTID:363515000","ICD9:187.8","EFO:0007355","DOID:3856"],"synonyms":[{"name":"cancer of male reproductive organ","type":"exact"},{"name":"male genital cancer","type":"exact"},{"name":"male genital neoplasm","type":"broad"},{"name":"male reproductive organ cancer","type":"exact"},{"name":"male reproductive system neoplasm","type":"broad"},{"name":"malignant Male reproductive system neoplasm","type":"exact"},{"name":"malignant Male reproductive system tumor","type":"exact"},{"name":"malignant Male reproductive system tumour","type":"exact"},{"name":"malignant male reproductive organ neoplasm","type":"exact"},{"name":"malignant neoplasm of Male reproductive system","type":"exact"},{"name":"malignant neoplasm of male genital organ","type":"exact"},{"name":"malignant neoplasm of male genital organ or tract","type":"exact"},{"name":"malignant neoplasm of male genital organ, site unspecified","type":"exact"},{"name":"malignant neoplasm of male genital organs","type":"exact"},{"name":"malignant neoplasm of male reproductive organ","type":"exact"},{"name":"malignant neoplasm of the Male reproductive system","type":"exact"},{"name":"malignant tumor of Male reproductive system","type":"exact"},{"name":"malignant tumor of male genital organ","type":"exact"},{"name":"malignant tumor of male reproductive system","type":"exact"},{"name":"malignant tumor of the Male reproductive system","type":"exact"},{"name":"malignant tumour of Male reproductive system","type":"exact"},{"name":"malignant tumour of male genital organ","type":"exact"},{"name":"malignant tumour of male reproductive system","type":"exact"},{"name":"malignant tumour of the Male reproductive system","type":"exact"},{"name":"neoplasm of male genital organ","type":"broad"},{"name":"tumor of male reproductive system","type":"broad"},{"name":"tumour of male reproductive system","type":"broad"}],"termid":"MONDO:0005836","xrefs":{"Monarch":{"xref_id":"0005836"}}}


id: PBO:0087962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transport adaptor or symportin; assembly chaperone that co-translationally associates with nascent Rpl5p, preventing aggregation; facilitates synchronized nuclear coimport of two 5S-rRNA binding proteins, Rpl5p and Rpl11p, mediated by import receptor Kap104p; required for biogenesis of the large ribosomal subunit; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus","termid":"PBO:0087962"}


id: PBO:0064072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 106","termid":"PBO:0064072"}


id: GO:1901796
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of signal transduction by p53 class mediator.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular signal transduction","termid":"GO:1902531"},{"relation_name":"regulates","term_name":"signal transduction by p53 class mediator","termid":"GO:0072331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of signal transduction by p53 class mediator","secondary_identifiers":["Reactome:R-HSA-5633007"],"termid":"GO:1901796"}


id: PBO:0084234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hypothetical protein; deletion of locus affects telomere length","termid":"PBO:0084234"}


id: MONDO:0022899
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crawfurd syndrome","termid":"MONDO:0022899","xrefs":{"Monarch":{"xref_id":"0022899"}}}


id: MONDO:0012356
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete glomerulocystic kidney disease with hyperuricemia and isosthenuria (obsolete MONDO:0012356)","termid":"MONDO:0012356","xrefs":{"Monarch":{"xref_id":"0012356"}}}


id: PBO:0064080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 114","termid":"PBO:0064080"}


id: PBO:0088509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol phosphorylceramide synthase Aur1","termid":"PBO:0088509"}


id: PBO:0042239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine receptor 2","termid":"PBO:0042239"}


id: PBO:0031672
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_secretion","termid":"PBO:0031672"}


id: GO:1905437
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of histone H3-K4 trimethylation.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:27541139"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of histone H3-K4 trimethylation (obsolete GO:1905437)","synonyms":[{"name":"activation of histone H3-K4 trimethylation","type":"narrow"},{"name":"up regulation of histone H3-K4 trimethylation","type":"exact"},{"name":"up-regulation of histone H3-K4 trimethylation","type":"exact"},{"name":"upregulation of histone H3-K4 trimethylation","type":"exact"}],"termid":"GO:1905437"}


id: PBO:0075165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein D1 polypeptide","termid":"PBO:0075165"}


id: PR:O00084
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ure2 gene.","definition_xrefs":["UniProtKB:O00084","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urease (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1952.11c","synonyms":[{"name":"Spom972h-ure2","type":"exact"},{"name":"urea amidohydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O00084"}


id: PBO:0059364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S18A pseudogene 1","termid":"PBO:0059364"}


id: GO:0005352
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: alpha-glucoside(out) + H+(out) = alpha-glucoside(in) + H+(in). Alpha-glucosides include trehalose, maltose, turanose, isomaltose, alpha-methylglucoside, maltotriose, palatinose, trehalose and melezitose.","definition_xrefs":["TC:2.A.1.1.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-glucoside transmembrane transporter activity","termid":"GO:0015151"},{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"alpha-glucoside:proton symporter activity","synonyms":[{"name":"alpha-glucoside:hydrogen symporter activity","type":"exact"},{"name":"general alpha-glucoside transporter activity","type":"broad"},{"name":"general alpha-glucoside:hydrogen symporter activity","type":"exact"},{"name":"general alpha-glucoside:proton symporter activity","type":"exact"}],"termid":"GO:0005352"}


id: MONDO:0004588
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inability to see clearly in dim light.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"blindness (disorder)","termid":"MONDO:0001941"},{"relation_name":"is_a","term_name":"retinal disorder","termid":"MONDO:0005283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"night blindness","secondary_identifiers":["ICD9:368.6","icd11.foundation:205882698","MESH:D009755","MEDGEN:10349","NCIT:C34850","ICD9:368.69","ICD10CM:H53.6","ICD9:368.60","SCTID:65194006","UMLS:C0028077","DOID:8499"],"synonyms":[{"name":"nyctalopia","type":"exact"}],"termid":"MONDO:0004588","xrefs":{"Monarch":{"xref_id":"0004588"}}}


id: PBO:0062284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily K member 1","termid":"PBO:0062284"}


id: PBO:0119639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase phospholipid transporting 11C (ATP11C blood group)","termid":"PBO:0119639"}


id: FYPO:0007083
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a short meiotic spindle assembles, and may begin elongation, but does not elongate normally or completely, and eventually collapses. Upon collapse the spindle may break or shrink.","definition_xrefs":["PomBase:mah","PMID:31532702"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiosis I","termid":"FYPO:0003603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"meiotic spindle collapse","synonyms":[{"name":"broken meiotic spindle","type":"related"},{"name":"meiotic spindle breakage","type":"exact"},{"name":"spindle collapse during meiosis","type":"exact"},{"name":"spindle collapse during meiotic cell cycle","type":"related"}],"termid":"FYPO:0007083"}


id: GO:0032342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of aldosterone, a corticosteroid hormone that is produced by the zona glomerulosa of the adrenal cortex and regulates salt (sodium and potassium) and water balance.","definition_xrefs":["PMID:16527843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C21-steroid hormone biosynthetic process","termid":"GO:0006700"},{"relation_name":"is_a","term_name":"mineralocorticoid biosynthetic process","termid":"GO:0006705"},{"relation_name":"is_a","term_name":"aldosterone metabolic process","termid":"GO:0032341"},{"relation_name":"is_a","term_name":"primary alcohol biosynthetic process","termid":"GO:0034309"},{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"aldehyde biosynthetic process","termid":"GO:0046184"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"aldosterone biosynthetic process","termid":"GO:0032342"}


id: PBO:0064852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 3","termid":"PBO:0064852"}


id: PBO:0057962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3683","termid":"PBO:0057962"}


id: GO:0102898
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: H+ + levopimaradienol + NADPH + O2 = levopiramadiene-diol + NADP + H2O.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete levopimaradienol hydroxylase activity (obsolete GO:0102898)","termid":"GO:0102898"}


id: PBO:0002308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HECT-type ubiquitin-protein ligase E3 Pub1","termid":"PBO:0002308"}


id: MONDO:0019600
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Xeroderma pigmentosum (XP) is a rare genodermatosis characterized by extreme sensitivity to ultraviolet (UV)-induced changes in the skin and eyes, and multiple skin cancers. It is subdivided into 8 complementation groups, according to the affected gene: classical XP (XPA to XPG) and XP variant (XPV).","definition_xrefs":["Orphanet:910"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"progeroid syndrome","termid":"MONDO:0015333"},{"relation_name":"is_a","term_name":"hereditary photodermatosis","termid":"MONDO:0015951"},{"relation_name":"is_a","term_name":"DNA repair disease","termid":"MONDO:0021190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0021190"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0021190","MONDO:0005066"],"is_obsolete":false,"name":"xeroderma pigmentosum","secondary_identifiers":["MESH:D014983","NANDO:2201002","ICD10CM:Q82.1","DOID:0050427","icd11.foundation:1243068849","MedDRA:10048220","NORD:1870","GARD:7910","UMLS:C0043346","SCTID:44600005","NANDO:2100286","NCIT:C3452","MEDGEN:21943","NANDO:1200608"],"synonyms":[{"name":"Kaposi dermatosis","type":"exact"},{"name":"Kaposi disease","type":"exact"},{"name":"XP","type":"exact"},{"name":"angioma pigmentosum atrophicum","type":"exact"},{"name":"atrophoderma pigmentosum","type":"exact"},{"name":"melanosis lenticularis progressiva","type":"exact"},{"name":"pigmented epitheliomatosis","type":"exact"},{"name":"xeroderma of Kaposi","type":"exact"},{"name":"xeroderma pigmentosa","type":"related"},{"name":"xeroderma pigmentosum syndrome","type":"exact"}],"termid":"MONDO:0019600","xrefs":{"Monarch":{"xref_id":"0019600"}}}


id: MONDO:1040042
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any ciliopathy caused by variants in the BBS7 gene.","definition_xrefs":["PMID:19797195"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ciliopathy","termid":"MONDO:0005308"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BBS7-related ciliopathy","synonyms":[{"name":"BBS7-related ciliopathy","type":"exact"}],"termid":"MONDO:1040042","xrefs":{"Monarch":{"xref_id":"1040042"}}}


id: GO:0033891
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endonucleolytic cleavage to give 5'-phosphooligonucleotide end-products, with a preference for cleavage within the sequence CC.","definition_xrefs":["EC:3.1.21.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA endonuclease activity, producing 5'-phosphomonoesters","termid":"GO:0016888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0140097","GO:0003824","GO:0016787","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"CC-preferring endodeoxyribonuclease activity","secondary_identifiers":["MetaCyc:3.1.21.6-RXN"],"synonyms":[{"name":"5'-CC-3'-preferring endodeoxyribonuclease activity","type":"related"},{"name":"Streptomyces glaucescens exocytoplasmic dodeoxyribonuclease activity","type":"related"},{"name":"Streptomyces glaucescens exocytoplasmic endodeoxyribonuclease activity","type":"related"},{"name":"Streptomyces glaucescens exocytoplasmic endonuclease activity","type":"related"}],"termid":"GO:0033891"}


id: PBO:0072387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 13","termid":"PBO:0072387"}


id: PBO:0080370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VOPP1 WW domain binding protein","termid":"PBO:0080370"}


id: GO:0044738
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism negatively regulates the activity of a voltage-gated sodium channel in another organism.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of acid-sensing ion channel in another organism (obsolete GO:0044738)","synonyms":[{"name":"negative regulation of ASIC channel in other organism","type":"exact"},{"name":"negative regulation of acid-sensing ion channel in other organism","type":"exact"}],"termid":"GO:0044738"}


id: PBO:0083542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF YRF1-4/YLR466W","termid":"PBO:0083542"}


id: MONDO:0017588
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm involving a nail.","definition_xrefs":["MONDO:patterns/neoplasm"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete rare skin tumor or hamartoma (obsolete MONDO:0019300)","termid":"MONDO:0019300"},{"relation_name":"is_a","term_name":"nail disorder","termid":"MONDO:0002884"},{"relation_name":"is_a","term_name":"neoplasm","termid":"MONDO:0005070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nail tumor","secondary_identifiers":["Orphanet:300515","UMLS:C4021961","GARD:21235","MEDGEN:867576"],"synonyms":[{"name":"nail neoplasm","type":"exact"},{"name":"nail neoplasm (disease)","type":"exact"},{"name":"nail tumor","type":"exact"},{"name":"neoplasm of nail","type":"exact"},{"name":"rare nail tumor","type":"related"},{"name":"rare nail tumour","type":"related"},{"name":"tumor of nail","type":"exact"},{"name":"tumour of nail","type":"exact"}],"termid":"MONDO:0017588","xrefs":{"Monarch":{"xref_id":"0017588"}}}


id: PBO:0090579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Utp13","termid":"PBO:0090579"}


id: PBO:0068364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 146","termid":"PBO:0068364"}


id: PBO:0000876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fusion cytochrome c oxidase assembly protein Cox1101, mitochondrial ribosomal protein Rsm22 (predicted)","termid":"PBO:0000876"}


id: GO:0002600
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of antigen processing and presentation of lipid antigen via MHC class Ib.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of antigen processing and presentation via MHC class Ib","termid":"GO:0002594"},{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation of lipid antigen via MHC class Ib","termid":"GO:0002598"},{"relation_name":"positively_regulates","term_name":"antigen processing and presentation of lipid antigen via MHC class Ib","termid":"GO:0048003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of antigen processing and presentation of lipid antigen via MHC class Ib","synonyms":[{"name":"activation of antigen processing and presentation of lipid antigen via MHC class Ib","type":"narrow"},{"name":"positive regulation of lipid antigen processing and presentation via MHC class Ib","type":"exact"},{"name":"stimulation of antigen processing and presentation of lipid antigen via MHC class Ib","type":"narrow"},{"name":"up regulation of antigen processing and presentation of lipid antigen via MHC class Ib","type":"exact"},{"name":"up-regulation of antigen processing and presentation of lipid antigen via MHC class Ib","type":"exact"},{"name":"upregulation of antigen processing and presentation of lipid antigen via MHC class Ib","type":"exact"}],"termid":"GO:0002600"}


id: PBO:0036549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOPS/CORVET complex subunit, ubiquitin-protein ligase E3 Pep3/Vps18 (predicted)","termid":"PBO:0036549"}


id: PR:O74553
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tRNA-dihydrouridine synthase 4-like that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04755","PRO:DNx","PANTHER:PTHR11082:SF6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC777.15","secondary_identifiers":["UniProtKB:O74553"],"synonyms":[{"name":"Spom972h-DUS4L","type":"exact"},{"name":"tRNA-dihydrouridine synthase 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74553"}


id: MOD:01811
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-methionine residue to 5x(13)C,1x(15)N labeled L-methionine.","definition_xrefs":["Unimod:268#M","PubMed:12771378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-methionine residue","termid":"MOD:00913"},{"relation_name":"is_a","term_name":"5x(13)C,1x(15)N labeled residue","termid":"MOD:01809"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5x(13)C,1x(15)N labeled L-methionine","synonyms":[{"name":"13C(5) 15N(1) Silac label","type":"related"},{"name":"Label:13C(5)15N(1)","type":"related"}],"termid":"MOD:01811"}


id: FYPO:0003366
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of pyridoxine into the cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal pyridoxine import","termid":"FYPO:0003365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased pyridoxine import","synonyms":[{"name":"decreased pyridoxine import across plasma membrane","type":"exact"},{"name":"decreased pyridoxine import during mitotic cell cycle","type":"related"},{"name":"decreased pyridoxine import during vegetative growth","type":"exact"},{"name":"decreased pyridoxine import into cell","type":"exact"},{"name":"decreased pyridoxine uptake","type":"exact"},{"name":"reduced pyridoxine import","type":"exact"}],"termid":"FYPO:0003366"}


id: MONDO:0000088
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Unusually early sexual maturity.","definition_xrefs":["NCIT:C79704"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete rare endocrine growth disease (obsolete MONDO:0019590)","termid":"MONDO:0019590"},{"relation_name":"is_a","term_name":"gonadal disorder","termid":"MONDO:0002259"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"precocious puberty","secondary_identifiers":["MEDGEN:18752","MedDRA:10044701","Orphanet:95708","SCTID:400179000","UMLS:C0034013","HP:0000826","MESH:D011629","ICD10CM:E30.1","NANDO:2100135","MedDRA:10058084","ICD9:259.1"],"synonyms":[{"name":"familial precocious puberty","type":"narrow"},{"name":"idiopathic sexual precocity","type":"narrow"},{"name":"pubertas praecox","type":"exact"},{"name":"sexual precocity","type":"exact"}],"termid":"MONDO:0000088","xrefs":{"Monarch":{"xref_id":"0000088"}}}


id: PBO:0049051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 50","termid":"PBO:0049051"}


id: MONDO:0014540
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any amelogenesis imperfecta in which the cause of the disease is a mutation in the ITGB6 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amelogenesis imperfecta type 1","termid":"MONDO:0015047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amelogenesis imperfecta type 1H","secondary_identifiers":["UMLS:C4015557","MEDGEN:863994","OMIM:616221","DOID:0110064","GARD:16071"],"synonyms":[{"name":"AI1H","type":"exact"},{"name":"ITGB6 amelogenesis imperfecta","type":"exact"},{"name":"amelogenesis imperfecta caused by mutation in ITGB6","type":"exact"},{"name":"amelogenesis imperfecta type IH","type":"exact"},{"name":"amelogenesis imperfecta, type 1H","type":"related"},{"name":"amelogenesis imperfecta, type IH","type":"related"}],"termid":"MONDO:0014540","xrefs":{"Monarch":{"xref_id":"0014540"}}}


id: PBO:0029353
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_chromatin_binding","termid":"PBO:0029353"}


id: PBO:0061830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxoglutarate dehydrogenase","termid":"PBO:0061830"}


id: MONDO:0009738
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare lysosomal storage disease, and the severe, early onset form of sialidosis characterized by a progressively severe mucopolysaccharidosis-like phenotype (coarse facies, dysostosis multiplex, hepatosplenomegaly), macular cherry-red spots as well as psychomotor and developmental delay. ST-2 displays a broad spectrum of clinical severity with antenatal/congenital, infantile and juvenile presentations.","definition_xrefs":["Orphanet:87876"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"excluded_subClassOf","term_name":"bone disorder","termid":"MONDO:0005381"},{"relation_name":"excluded_subClassOf","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"is_a","term_name":"sialidosis","termid":"MONDO:0017734"},{"relation_name":"is_a","term_name":"familial mucolipidosis","termid":"MONDO:0031422"},{"relation_name":"is_a","term_name":"lysosomal storage disease with skeletal involvement","termid":"MONDO:0800088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0002561"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005066","MONDO:0002561"],"is_obsolete":false,"name":"sialidosis type 2","secondary_identifiers":["UMLS:C4282398","NANDO:1200118","NANDO:2201193","OMIM:256150","MEDGEN:924303","icd11.foundation:1855856697","NCIT:C61267","DOID:3343","SCTID:52186006","NANDO:1200120","NCIT:C125596","SCTID:81896006","OMIM:256550","MESH:C562606","NANDO:2201192","GARD:7183","SCTID:70528007"],"synonyms":[{"name":"ML 1","type":"related"},{"name":"ML1","type":"related"},{"name":"NEU 1 deficiency","type":"related"},{"name":"NEU1 sialidosis","type":"exact"},{"name":"Neu deficiency","type":"related"},{"name":"Neu1 deficiency","type":"related"},{"name":"Neug deficiency","type":"related"},{"name":"cherry Red spot--myoclonus syndrome","type":"related"},{"name":"dysmorphic sialidosis","type":"exact"},{"name":"dysmorphic sialidosis with renal involvement","type":"exact"},{"name":"glycoprotein neuraminidase deficiency","type":"related"},{"name":"glycoproteinosis","type":"related"},{"name":"infantile dysmorphic sialidosis","type":"exact"},{"name":"lipomucopolysaccharidosis","type":"related"},{"name":"mucolipidosis 1","type":"related"},{"name":"mucolipidosis I","type":"exact"},{"name":"mucolipidosis type 1","type":"related"},{"name":"mucolipidosis type I","type":"exact"},{"name":"myoclonus--cherry Red spot syndrome","type":"related"},{"name":"nephrosialidosis","type":"exact"},{"name":"neuraminidase 1 deficiency","type":"related"},{"name":"neuraminidase deficiency","type":"related"},{"name":"sialidase deficiency","type":"related"},{"name":"sialidosis","type":"broad"},{"name":"sialidosis caused by mutation in NEU1","type":"exact"},{"name":"sialidosis type II","type":"exact"},{"name":"sialidosis, type 1","type":"related"},{"name":"sialidosis, type 2","type":"exact"},{"name":"sialidosis, type I","type":"exact"},{"name":"sialidosis, type II","type":"related"}],"termid":"MONDO:0009738","xrefs":{"Monarch":{"xref_id":"0009738"}}}


id: PR:P36612
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 26S protease regulatory subunit 4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02762","PANTHER:PTHR23073:SF9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S protease regulatory subunit 4 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4.07c","secondary_identifiers":["UniProtKB:P36612"],"synonyms":[{"name":"Spom972h-PSMC1","type":"exact"},{"name":"protein mts2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P36612"}


id: PBO:0070342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 15","termid":"PBO:0070342"}


id: GO:1902537
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A pinocytosis which involves another organism.","definition_xrefs":["GOC:TermGenie","GOC:jl","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism pinocytosis (obsolete GO:1902537)","termid":"GO:1902537"}


id: MONDO:1011275
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any glaucoma that occurs in cats due to a mutation in the LTBP2 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"glaucoma, domestic cat","termid":"MONDO:1011511"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glaucoma, LTBP2-related, domestic cat","secondary_identifiers":["OMIA:002017-9685"],"synonyms":[{"name":"glaucoma 3, primary congenital, domestic cat","type":"related"}],"termid":"MONDO:1011275","xrefs":{"Monarch":{"xref_id":"1011275"}}}


id: GO:0051619
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that prevents the activation of the directed movement of histamine into a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inhibition of neurotransmitter uptake","termid":"GO:0051609"},{"relation_name":"is_a","term_name":"negative regulation of histamine uptake","termid":"GO:0051617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"inhibition of histamine uptake","synonyms":[{"name":"inhibition of histamine import","type":"exact"}],"termid":"GO:0051619"}


id: PBO:0029702
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_nucleoside_diphosphate_kinase_activity","termid":"PBO:0029702"}


id: PBO:0036356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-Not complex NOT box subunit Not3/5","termid":"PBO:0036356"}


id: MONDO:0007968
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanoma tumor antigen Gp90","secondary_identifiers":["OMIM:155770","MEDGEN:322558","UMLS:C1835040"],"synonyms":[{"name":"Class 1 unique tumor antigen of melanoma","type":"related"},{"name":"Class 1 unique tumour antigen of melanoma","type":"related"},{"name":"melanoma tumor antigen Gp90","type":"exact"}],"termid":"MONDO:0007968","xrefs":{"Monarch":{"xref_id":"0007968"}}}


id: MONDO:0019410
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete nodulosis-arthropathy-osteolysis syndrome (obsolete MONDO:0019410)","secondary_identifiers":["Orphanet:85196"],"termid":"MONDO:0019410","xrefs":{"Monarch":{"xref_id":"0019410"}}}


id: MONDO:0007927
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"macroglossia","termid":"MONDO:0015496"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital macroglossia","secondary_identifiers":["icd11.foundation:423141418","MESH:C531735","Orphanet:2430","ICD9:750.15","SCTID:270516002","UMLS:C0009677","GARD:16599","MEDGEN:3588","OMIM:153630"],"synonyms":[{"name":"macroglossia","type":"related"}],"termid":"MONDO:0007927","xrefs":{"Monarch":{"xref_id":"0007927"}}}


id: PBO:0002090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RhoGEF Scd1","termid":"PBO:0002090"}


id: PBO:0063932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pim-1 proto-oncogene, serine/threonine kinase","termid":"PBO:0063932"}


id: PBO:0073886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 12 member 3","termid":"PBO:0073886"}


id: GO:0030311
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of poly-N-acetyllactosamine, a carbohydrate composed of N-acetyllactosamine repeats (Gal-beta-1,4-GlcNAc-beta-1,3)n.","definition_xrefs":["GOC:mah","PMID:9405606"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoglycan biosynthetic process","termid":"GO:0006023"},{"relation_name":"is_a","term_name":"poly-N-acetyllactosamine metabolic process","termid":"GO:0030309"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"poly-N-acetyllactosamine biosynthetic process","synonyms":[{"name":"poly-N-acetyllactosamine anabolism","type":"exact"},{"name":"poly-N-acetyllactosamine biosynthesis","type":"exact"},{"name":"poly-N-acetyllactosamine formation","type":"exact"},{"name":"poly-N-acetyllactosamine synthesis","type":"exact"}],"termid":"GO:0030311"}


id: PBO:0070795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 25","termid":"PBO:0070795"}


id: PBO:0065543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pancreas associated transcription factor 1a","termid":"PBO:0065543"}


id: GO:0044782
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cilium, a specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole.","definition_xrefs":["GOC:jl","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle organization","termid":"GO:0006996"},{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection organization","termid":"GO:0120036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cilium organization","synonyms":[{"name":"microtubule-based flagellum organization","type":"exact"}],"termid":"GO:0044782"}


id: PBO:0046278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EMI domain containing 1","termid":"PBO:0046278"}


id: PBO:0052881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 9-3","termid":"PBO:0052881"}


id: MONDO:0016485
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome characterized by postlingual progressive hearing loss, abnormalities in the vestibular system, and onset of retinitis pigmentosa symptoms usually by the second decade of life.","definition_xrefs":["NCIT:C126329"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Usher syndrome","termid":"MONDO:0019501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Usher syndrome type 3","secondary_identifiers":["DOID:0110828","icd11.foundation:1734357568","ICD10CM:H35.5","NANDO:1200944","MEDGEN:339336","Orphanet:231183","UMLS:C1568248","GARD:5442"],"synonyms":[{"name":"USH3","type":"exact"},{"name":"Usher syndrome type 3","type":"exact"}],"termid":"MONDO:0016485","xrefs":{"Monarch":{"xref_id":"0016485"}}}


id: PBO:0060939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NFE2 like bZIP transcription factor 2","termid":"PBO:0060939"}


id: PR:O13788
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ssr1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13788"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF and RSC complexes subunit ssr1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17G6.10","synonyms":[{"name":"Spom972h-ssr1","type":"exact"}],"termid":"PR:O13788"}


id: PR:Q11004
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A eukaryotic-type peptidyl-prolyl cis-trans isomerase D that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02048"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40 kDa peptidyl-prolyl cis-trans isomerase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1B3.03c","secondary_identifiers":["UniProtKB:Q11004"],"synonyms":[{"name":"CYP-40 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PPIase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Rotamase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PPID","type":"exact"},{"name":"cyclophilin-40 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q11004"}


id: GO:0035014
data:
  {"annotated_genes":["SJAG_02699"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94119],"is_not":false,"summary":null,"term":"GO:0035014"}]},"cv_name":"molecular_function","definition":"Modulates the activity of a phosphatidylinositol 3-kinase (PI3K). Regulatory subunits can link a PI3K catalytic subunit to upstream signaling events and help position the catalytic subunits close to their lipid substrates.","definition_xrefs":["GOC:bf","PMID:9255069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase regulator activity","termid":"GO:0019207"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02699":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0003674","GO:0030234","GO:0098772"],"is_obsolete":false,"name":"phosphatidylinositol 3-kinase regulator activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"PI3K regulator activity","type":"exact"},{"name":"phosphoinositide 3-kinase regulator activity","type":"exact"}],"termid":"GO:0035014","terms_by_termid":{"GO:0035014":null}}


id: MONDO:0019608
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete 46,XX disorder of sex development induced by maternal-derived androgen (obsolete MONDO:0019608)","secondary_identifiers":["Orphanet:91144","icd11.foundation:293874628"],"synonyms":[{"name":"46,XX DSD induced by maternal-derived androgen","type":"exact"}],"termid":"MONDO:0019608","xrefs":{"Monarch":{"xref_id":"0019608"}}}


id: PBO:0049167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRB2 related adaptor protein","termid":"PBO:0049167"}


id: GO:0070945
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed killing of a gram-negative bacterium by a neutrophil.","definition_xrefs":["ISBN:0781765196","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neutrophil-mediated killing of bacterium","termid":"GO:0070944"},{"relation_name":"part_of","term_name":"defense response to Gram-negative bacterium","termid":"GO:0050829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neutrophil-mediated killing of gram-negative bacterium","synonyms":[{"name":"neutrophil mediated killing of gram-negative bacterium","type":"exact"}],"termid":"GO:0070945"}


id: GO:0015665
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of an alcohol from one side of a membrane to the other. An alcohol is any carbon compound that contains a hydroxyl group.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter activity","termid":"GO:0022857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"alcohol transmembrane transporter activity","termid":"GO:0015665"}


id: GO:0016169
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to bacteriochlorophyll c, a chlorophyll of photosynthetic bacteria, for example green sulfur bacteria.","definition_xrefs":["ISBN:0192800981"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacteriochlorophyll binding","termid":"GO:0042314"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"bacteriochlorophyll c binding","termid":"GO:0016169"}


id: MONDO:1010750
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Epidermolysis bullosa that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermolysis bullosa, non-human animal","termid":"MONDO:1010129"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epidermolysis bullosa, dog","secondary_identifiers":["OMIA:000340-9615"],"termid":"MONDO:1010750","xrefs":{"Monarch":{"xref_id":"1010750"}}}


id: PBO:0086554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YGL149W is not an essential gene","termid":"PBO:0086554"}


id: MONDO:0013677
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal dominant Emery-Dreifuss muscular dystrophy in which the cause of the disease is a mutation in the TMEM43 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant Emery-Dreifuss muscular dystrophy","termid":"MONDO:0020336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267","MONDO:0000426","MONDO:0005336"],"is_obsolete":false,"name":"Emery-Dreifuss muscular dystrophy 7, autosomal dominant","secondary_identifiers":["UMLS:C3553060","GARD:18208","OMIM:614302","DOID:0070252","MEDGEN:765974"],"synonyms":[{"name":"EDMD7","type":"related"},{"name":"EMERY-Dreifuss muscular dystrophy 7, autosomal dominant","type":"related"},{"name":"Ehlers-Danlos syndrome, classic-like, 1","type":"related"},{"name":"Emery-Dreifuss muscular dystrophy 7, autosomal dominant","type":"exact"},{"name":"TMEM43 autosomal dominant Emery-Dreifuss muscular dystrophy","type":"exact"},{"name":"autosomal dominant Emery-Dreifuss muscular dystrophy caused by mutation in TMEM43","type":"exact"}],"termid":"MONDO:0013677","xrefs":{"Monarch":{"xref_id":"0013677"}}}


id: PBO:0065525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patched 2","termid":"PBO:0065525"}


id: MOD:00678
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to an hydroxylated L-proline.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydroxylated residue","termid":"MOD:00677"},{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxylated proline","synonyms":[{"name":"HyPro","type":"exact"}],"termid":"MOD:00678"}


id: PBO:0077976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon CGC) 4-1","termid":"PBO:0077976"}


id: GO:1990941
data:
  {"annotated_genes":["SJAG_00918"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[107055],"is_not":false,"summary":null,"term":"GO:1990941"}]},"cv_name":"cellular_component","definition":"Any of the mitotic spindle microtubules that attach to the kinetochores of chromosomes by their plus ends, and maneuver the chromosomes during mitotic chromosome segregation.","definition_xrefs":["PMID:18256284"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinetochore microtubule","termid":"GO:0005828"},{"relation_name":"is_a","term_name":"mitotic spindle microtubule","termid":"GO:1990498"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00918":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0072686"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0005575","GO:0072686","GO:0015630"],"is_obsolete":false,"name":"mitotic spindle kinetochore microtubule","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990941","terms_by_termid":{"GO:1990941":null}}


id: GO:0048683
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of collateral sprouting of an intact axon as a result of injury to an axon.","definition_xrefs":["GOC:dph","GOC:jid","GOC:dgh","GOC:lm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of collateral sprouting","termid":"GO:0048670"},{"relation_name":"is_a","term_name":"regulation of axon regeneration","termid":"GO:0048679"},{"relation_name":"regulates","term_name":"collateral sprouting of intact axon in response to injury","termid":"GO:0048673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of collateral sprouting of intact axon in response to injury","termid":"GO:0048683"}


id: PBO:0000613
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"motor neurone disease","termid":"PBO:0000613"}


id: MONDO:1012350
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"polioencephalomyelopathy, non-human animal","termid":"MONDO:1011870"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polioencephalomyelopathy, dog","secondary_identifiers":["OMIA:001280-9615"],"termid":"MONDO:1012350","xrefs":{"Monarch":{"xref_id":"1012350"}}}


id: PBO:0082924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytochrome c oxidase subunit; required for assembly of the Complex III-Complex IV supercomplex, and for assembly of Cox13p and Rcf2p into cytochrome c oxidase; similar to Rcf2p, and either Rcf1p or Rcf2p is required for late-stage assembly of the Cox12p and Cox13p subunits and for cytochrome c oxidase activity; required for growth under hypoxic conditions; member of the hypoxia induced gene family; C. elegans and human orthologs are functional in yeast","termid":"PBO:0082924"}


id: GO:0002485
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP-dependent ER pathway. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell and becomes associated with the MHC class I molecule in the ER following TAP-dependent transport from the cytosol. Class I here refers to classical class I molecules.","definition_xrefs":["ISBN:0781735149","GOC:add","PMID:14647477","PMID:15771591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway","termid":"GO:0002484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent","synonyms":[{"name":"TAP-dependent antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway","type":"exact"},{"name":"TAP-dependent endogenous peptide antigen processing and presentation via MHC class I via ER pathway","type":"exact"},{"name":"endogenous peptide antigen processing and presentation via MHC class I via ER pathway, TAP-dependent","type":"exact"}],"termid":"GO:0002485"}


id: PBO:0086233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that interacts with Rab GTPases; localized to late Golgi vesicles; computational analysis of large-scale protein-protein interaction data suggests a possible role in vesicle-mediated transport","termid":"PBO:0086233"}


id: PBO:0070257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U11 small nuclear 2, pseudogene","termid":"PBO:0070257"}


id: PBO:0055956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 70","termid":"PBO:0055956"}


id: FYPO:0000593
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of transposition is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transposition","termid":"FYPO:0000591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased transposition","synonyms":[{"name":"decreased transposable element transposition","type":"exact"},{"name":"decreased transposition during mitotic cell cycle","type":"related"},{"name":"decreased transposition during vegetative growth","type":"exact"},{"name":"reduced transposition","type":"exact"},{"name":"transposable element transposition: decreased","type":"related"}],"termid":"FYPO:0000593"}


id: PBO:0041371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C4orf46 pseudogene 3","termid":"PBO:0041371"}


id: PBO:0076408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor 5","termid":"PBO:0076408"}


id: GO:1905916
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cell differentiation involved in phenotypic switching.","definition_xrefs":["PMID:25089138","GOC:BHF_miRNA","GOC:TermGenie","GOC:BHF","GOC:rph","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell differentiation","termid":"GO:0045596"},{"relation_name":"is_a","term_name":"negative regulation of phenotypic switching","termid":"GO:1900240"},{"relation_name":"is_a","term_name":"regulation of cell differentiation involved in phenotypic switching","termid":"GO:1905915"},{"relation_name":"negatively_regulates","term_name":"cell differentiation involved in phenotypic switching","termid":"GO:0090679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell differentiation involved in phenotypic switching","synonyms":[{"name":"down regulation of cell differentiation involved in phenotypic switching","type":"exact"},{"name":"down-regulation of cell differentiation involved in phenotypic switching","type":"exact"},{"name":"downregulation of cell differentiation involved in phenotypic switching","type":"exact"},{"name":"inhibition of cell differentiation involved in phenotypic switching","type":"narrow"}],"termid":"GO:1905916"}


id: PBO:0109810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTCL family member 3","termid":"PBO:0109810"}


id: PBO:0049938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HERV-H LTR-associating 2","termid":"PBO:0049938"}


id: MONDO:0015277
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neuroendocrine carcinoma arising from the C-cells of the thyroid gland. It is closely associated with multiple endocrine neoplasia syndromes. Approximately 10% to 20% of medullary thyroid carcinomas are familial. Patients usually present with a thyroid nodule that is painless and firm. In the majority of cases nodal involvement is present at diagnosis. Surgery is the preferred treatment for both primary lesions and recurrences. This carcinoma is generally not very sensitive to radiation and almost unresponsive to chemotherapy.","definition_xrefs":["NCIT:C3879"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuroendocrine carcinoma","termid":"MONDO:0002120"},{"relation_name":"is_a","term_name":"thyroid gland follicular carcinoma","termid":"MONDO:0005034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"medullary thyroid gland carcinoma","secondary_identifiers":["UMLS:C0238462","GARD:7004","icd11.foundation:578519098","ONCOTREE:THME","HP:0002865","NANDO:2201054","DOID:3973","Orphanet:1332","SCTID:255032005","MEDGEN:66772","MedDRA:10027101"],"synonyms":[{"name":"C cell carcinoma","type":"exact"},{"name":"MTC","type":"exact"},{"name":"THME","type":"related"},{"name":"carcinoma of parafollicular cell","type":"exact"},{"name":"carcinoma, C-cell, malignant","type":"exact"},{"name":"medullary carcinoma","type":"exact"},{"name":"medullary carcinoma of the thyroid","type":"exact"},{"name":"medullary carcinoma of the thyroid gland","type":"exact"},{"name":"medullary carcinoma of thyroid","type":"exact"},{"name":"medullary carcinoma of thyroid gland","type":"exact"},{"name":"medullary thyroid cancer","type":"exact"},{"name":"medullary thyroid cancer (MTC)","type":"related"},{"name":"medullary thyroid carcinoma","type":"exact"},{"name":"medullary thyroid gland carcinoma","type":"exact"},{"name":"parafollicular cell carcinoma","type":"exact"},{"name":"thyroid cancer, medullary","type":"related"},{"name":"thyroid carcinoma, medullary","type":"related"},{"name":"thyroid gland medullary cancer","type":"exact"},{"name":"thyroid gland medullary carcinoma","type":"exact"},{"name":"thyroid gland neuroendocrine carcinoma","type":"exact"},{"name":"thyroid medullary carcinoma","type":"exact"},{"name":"ultimobranchial thyroid tumor","type":"exact"},{"name":"ultimobranchial thyroid tumour","type":"exact"}],"termid":"MONDO:0015277","xrefs":{"Monarch":{"xref_id":"0015277"}}}


id: PBO:0057129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 212","termid":"PBO:0057129"}


id: GO:0004458
data:
  {"annotated_genes":["SJAG_03804"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[82189],"is_not":false,"summary":null,"term":"GO:0004458"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-lactate + 2 [Fe(III)cytochrome c] = 2 [Fe(II)cytochrome c] + 2 H+ + pyruvate.","definition_xrefs":["RHEA:13521"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor","termid":"GO:0016898"},{"relation_name":"is_a","term_name":"D-lactate dehydrogenase activity","termid":"GO:0047809"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03804":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"D-lactate dehydrogenase (cytochrome) activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["EC:1.1.2.4","MetaCyc:D-LACTATE-DEHYDROGENASE-CYTOCHROME-RXN"],"synonyms":[{"name":"(R)-lactate:ferricytochrome-c 2-oxidoreductase activity","type":"exact"},{"name":"D-(-)-lactic cytochrome c reductase activity","type":"related"},{"name":"D-lactate (cytochrome) dehydrogenase activity","type":"related"},{"name":"D-lactate dehydrogenase activity","type":"broad"},{"name":"D-lactate ferricytochrome c oxidoreductase activity","type":"related"},{"name":"D-lactate-cytochrome c reductase activity","type":"related"},{"name":"cytochrome-dependent D-(-)-lactate dehydrogenase activity","type":"related"},{"name":"lactic acid dehydrogenase activity","type":"broad"}],"termid":"GO:0004458","terms_by_termid":{"GO:0004458":null}}


id: GO:0006402
data:
  {"annotated_genes":["SJAG_01625","SJAG_03883","SJAG_01944","SJAG_01867","SJAG_03466","SJAG_01521","SJAG_05322","SJAG_03283","SJAG_00797","SJAG_05014","SJAG_04084","SJAG_02036","SJAG_04283","SJAG_01252","SJAG_03876","SJAG_03179","SJAG_03984","SJAG_03454","SJAG_01191","SJAG_04824","SJAG_03805","SJAG_04768","SJAG_04640","SJAG_16457","SJAG_04427","SJAG_04825","SJAG_03745","SJAG_00966","SJAG_04153","SJAG_02723","SJAG_03070","SJAG_02808","SJAG_05243","SJAG_03696","SJAG_01818","SJAG_04025","SJAG_04500","SJAG_00226","SJAG_03223","SJAG_05276","SJAG_01436","SJAG_04407","SJAG_02879","SJAG_01936","SJAG_05240","SJAG_01830","SJAG_00961","SJAG_02213","SJAG_04818","SJAG_02622","SJAG_02382","SJAG_01331","SJAG_03886","SJAG_01696","SJAG_00686","SJAG_01529","SJAG_03276","SJAG_00759","SJAG_04360","SJAG_00507","SJAG_04350","SJAG_03597","SJAG_04682","SJAG_00425","SJAG_01431","SJAG_04527","SJAG_04056","SJAG_02573","SJAG_04946","SJAG_02720","SJAG_04118","SJAG_03448","SJAG_02540","SJAG_00343","SJAG_04006","SJAG_04198","SJAG_02526","SJAG_01540","SJAG_05694","SJAG_03952","SJAG_02275","SJAG_04880","SJAG_00854","SJAG_03706","SJAG_05010","SJAG_04321","SJAG_04601","SJAG_00391","SJAG_02383","SJAG_02374","SJAG_03023","SJAG_01053","SJAG_03157","SJAG_03132","SJAG_01822","SJAG_01218","SJAG_02239","SJAG_02601","SJAG_02370","SJAG_00456","SJAG_02005","SJAG_00452","SJAG_00285","SJAG_03113","SJAG_01910","SJAG_00670","SJAG_03234","SJAG_01720","SJAG_01843","SJAG_01412","SJAG_04291"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78051,114451],"is_not":false,"summary":null,"term":"GO:0006402"},{"annotations":[117942],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0061158"},{"annotations":[99612,80499,89655,80539],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0070935"},{"annotations":[76172,58789,77571,79345,81403,111587],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0000290"},{"annotations":[77804,80575],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031087"},{"annotations":[72379],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071044"},{"annotations":[113476],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000958"},{"annotations":[117729],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0061157"},{"annotations":[72386,88950],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0048255"},{"annotations":[89250],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0120271"},{"annotations":[91148],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0060212"},{"annotations":[115486,73080,74968,76087,88544,94453,74202,88909,92550,96038,73375,100557,64135,115046],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071028"},{"annotations":[90258,90334,98600,91717,91341,108828,86938,110882,96234,103832,108809,117731,107011],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033621"},{"annotations":[117732,72027,96746,76354,92918],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071031"},{"annotations":[115932],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071032"},{"annotations":[109358,117733,90259,86939,115152,105859,108829,94494,91840,88296],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071030"},{"annotations":[103936,115487,115047,101607,104806,107013,117930,106020,91720,95410,92551,96747],"is_not":false,"rel_names":["is_a","positively_regulates","regulates"],"summary":null,"term":"GO:0071042"},{"annotations":[101693,110833,79679,59536,114927,81666,74831,67853,69446],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000956"},{"annotations":[108395,107016,115751,100759,115489,88211,104808,89263,96750,95412,106022,77173,90997,103938,117932,92553,101609],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070478"},{"annotations":[60378,81428,97647,97560,78388,72354,114746,99445],"is_not":false,"rel_names":["is_a","positively_regulates","regulates"],"summary":null,"term":"GO:0000288"},{"annotations":[106729,113704,76311],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070966"},{"annotations":[117933,115490,95413,108396,101610,103939,106023,96751,92554,116838,107017,63358,115752,100760,104809],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070481"},{"annotations":[105439,114976,104300,75075,71660,113172,89366],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000184"},{"annotations":[104316,75357],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000294"},{"annotations":[75443,115262,90249,77253,91976,116209,80581,92073,89251,95003,81530,71999,79487,93812],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0000289"},{"annotations":[91149],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0036450"},{"annotations":[67856,116839,90250],"is_not":false,"rel_names":["regulates","is_a","positively_regulates"],"summary":null,"term":"GO:1990074"},{"annotations":[106209],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0120272"},{"annotations":[74495,89162,104461],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0060213"},{"annotations":[116231],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0061013"},{"annotations":[87862],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0043488"},{"annotations":[89658,90999,89265],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:2000815"},{"annotations":[98017],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0060211"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA catabolic process","termid":"GO:0006401"},{"relation_name":"is_a","term_name":"negative regulation of gene expression","termid":"GO:0010629"},{"relation_name":"is_a","term_name":"mRNA metabolic process","termid":"GO:0016071"}],"gene_count":111,"genes_by_uniquename":{"SJAG_00226":null,"SJAG_00285":null,"SJAG_00343":null,"SJAG_00391":null,"SJAG_00425":null,"SJAG_00452":null,"SJAG_00456":null,"SJAG_00507":null,"SJAG_00670":null,"SJAG_00686":null,"SJAG_00759":null,"SJAG_00797":null,"SJAG_00854":null,"SJAG_00961":null,"SJAG_00966":null,"SJAG_01053":null,"SJAG_01191":null,"SJAG_01218":null,"SJAG_01252":null,"SJAG_01331":null,"SJAG_01412":null,"SJAG_01431":null,"SJAG_01436":null,"SJAG_01521":null,"SJAG_01529":null,"SJAG_01540":null,"SJAG_01625":null,"SJAG_01696":null,"SJAG_01720":null,"SJAG_01818":null,"SJAG_01822":null,"SJAG_01830":null,"SJAG_01843":null,"SJAG_01867":null,"SJAG_01910":null,"SJAG_01936":null,"SJAG_01944":null,"SJAG_02005":null,"SJAG_02036":null,"SJAG_02213":null,"SJAG_02239":null,"SJAG_02275":null,"SJAG_02370":null,"SJAG_02374":null,"SJAG_02382":null,"SJAG_02383":null,"SJAG_02526":null,"SJAG_02540":null,"SJAG_02573":null,"SJAG_02601":null,"SJAG_02622":null,"SJAG_02720":null,"SJAG_02723":null,"SJAG_02808":null,"SJAG_02879":null,"SJAG_03023":null,"SJAG_03070":null,"SJAG_03113":null,"SJAG_03132":null,"SJAG_03157":null,"SJAG_03179":null,"SJAG_03223":null,"SJAG_03234":null,"SJAG_03276":null,"SJAG_03283":null,"SJAG_03448":null,"SJAG_03454":null,"SJAG_03466":null,"SJAG_03597":null,"SJAG_03696":null,"SJAG_03706":null,"SJAG_03745":null,"SJAG_03805":null,"SJAG_03876":null,"SJAG_03883":null,"SJAG_03886":null,"SJAG_03952":null,"SJAG_03984":null,"SJAG_04006":null,"SJAG_04025":null,"SJAG_04056":null,"SJAG_04084":null,"SJAG_04118":null,"SJAG_04153":null,"SJAG_04198":null,"SJAG_04283":null,"SJAG_04291":null,"SJAG_04321":null,"SJAG_04350":null,"SJAG_04360":null,"SJAG_04407":null,"SJAG_04427":null,"SJAG_04500":null,"SJAG_04527":null,"SJAG_04601":null,"SJAG_04640":null,"SJAG_04682":null,"SJAG_04768":null,"SJAG_04818":null,"SJAG_04824":null,"SJAG_04825":null,"SJAG_04880":null,"SJAG_04946":null,"SJAG_05010":null,"SJAG_05014":null,"SJAG_05240":null,"SJAG_05243":null,"SJAG_05276":null,"SJAG_05322":null,"SJAG_05694":null,"SJAG_16457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0016071"],"is_obsolete":false,"name":"mRNA catabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"mRNA breakdown","type":"exact"},{"name":"mRNA catabolism","type":"exact"},{"name":"mRNA decay","type":"related"},{"name":"mRNA degradation","type":"exact"}],"termid":"GO:0006402","terms_by_termid":{"GO:0000184":null,"GO:0000288":null,"GO:0000289":null,"GO:0000290":null,"GO:0000294":null,"GO:0000956":null,"GO:0000958":null,"GO:0006402":null,"GO:0031087":null,"GO:0033621":null,"GO:0036450":null,"GO:0043488":null,"GO:0048255":null,"GO:0060211":null,"GO:0060212":null,"GO:0060213":null,"GO:0061013":null,"GO:0061157":null,"GO:0061158":null,"GO:0070478":null,"GO:0070481":null,"GO:0070935":null,"GO:0070966":null,"GO:0071028":null,"GO:0071030":null,"GO:0071031":null,"GO:0071032":null,"GO:0071042":null,"GO:0071044":null,"GO:0120271":null,"GO:0120272":null,"GO:1990074":null,"GO:2000815":null}}


id: GO:1990076
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any cell wall polysaccharide catabolic process that is involved in abscission.","definition_xrefs":["GOC:TermGenie","PMID:23479623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall polysaccharide catabolic process","termid":"GO:0044347"},{"relation_name":"part_of","term_name":"abscission","termid":"GO:0009838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0071554"],"is_obsolete":false,"name":"cell wall polysaccharide catabolic process involved in abscission","termid":"GO:1990076"}


id: GO:0022804
data:
  {"annotated_genes":["SJAG_04277","SJAG_03497","SJAG_00136","SJAG_02077","SJAG_00233","SJAG_02646","SJAG_01471","SJAG_MIT13","SJAG_03606","SJAG_00057","SJAG_04506","SJAG_01400","SJAG_01129","SJAG_03401","SJAG_03406","SJAG_04167","SJAG_02780","SJAG_02399","SJAG_01447","SJAG_00275","SJAG_07007","SJAG_03337","SJAG_04258","SJAG_00339","SJAG_04152","SJAG_01033","SJAG_00212","SJAG_02023","SJAG_00755","SJAG_01183","SJAG_04673","SJAG_01435","SJAG_03960","SJAG_03595","SJAG_03560","SJAG_03363","SJAG_04015","SJAG_MIT03","SJAG_02463","SJAG_03785","SJAG_02602","SJAG_03951","SJAG_MIT20","SJAG_03502","SJAG_01913","SJAG_01397","SJAG_02457","SJAG_00516","SJAG_01669","SJAG_02779","SJAG_04714","SJAG_04241","SJAG_00373","SJAG_00276","SJAG_01541","SJAG_03866","SJAG_03850","SJAG_01190","SJAG_05629","SJAG_04616","SJAG_04068","SJAG_02782","SJAG_03490","SJAG_01406","SJAG_01059","SJAG_02958","SJAG_00522","SJAG_MIT04","SJAG_01355","SJAG_04757","SJAG_03608","SJAG_04905","SJAG_01872","SJAG_04028","SJAG_01145","SJAG_07006","SJAG_00601","SJAG_03515","SJAG_01960","SJAG_01490","SJAG_05294","SJAG_04406","SJAG_02050","SJAG_01344","SJAG_00612","SJAG_00976","SJAG_04698","SJAG_03820","SJAG_02504","SJAG_01077","SJAG_04955","SJAG_00547","SJAG_01817","SJAG_05213","SJAG_04096"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88738],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140481"},{"annotations":[108233],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015410"},{"annotations":[77393],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015421"},{"annotations":[117825,96558],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044604"},{"annotations":[57938,72644],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140359"},{"annotations":[117566,95570],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008559"},{"annotations":[110545],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046715"},{"annotations":[78384,76821,58769,73552,92814,64775],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015297"},{"annotations":[96070],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000515"},{"annotations":[59110],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005471"},{"annotations":[102385],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140987"},{"annotations":[76930,81971,72840],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019829"},{"annotations":[80194,71873,90673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015369"},{"annotations":[74945,74956,74840,78045,76559,72640],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005351"},{"annotations":[74305],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071913"},{"annotations":[115061,118662,88687,87652,75678,118684,107847,116425,118714,113827,91429],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004129"},{"annotations":[116821],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005358"},{"annotations":[100197],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034216"},{"annotations":[101183],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015366"},{"annotations":[95262],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005364"},{"annotations":[90674],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010486"},{"annotations":[73785,74784],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005366"},{"annotations":[112448],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008137"},{"annotations":[73191,82017],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005388"},{"annotations":[79607],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043682"},{"annotations":[72841,71194],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015662"},{"annotations":[107413],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140581"},{"annotations":[111938],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008900"},{"annotations":[72553,79695,74971],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008553"},{"annotations":[75348],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008554"},{"annotations":[64240],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140358"},{"annotations":[80651,112319,73992,116111,72635],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005315"},{"annotations":[75174],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015379"},{"annotations":[81836],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015386"},{"annotations":[111382,102813,104735,107147,107124],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015450"},{"annotations":[66542,61803,80297,61018,63353,81421,58435,69229,72971,62669,61979,61264,65838,80244],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046961"},{"annotations":[117784,112993,118689,107521,64962,117296,103607],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008121"},{"annotations":[67079],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008271"},{"annotations":[79879,81835],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015385"},{"annotations":[57596],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005452"},{"annotations":[73546,81006],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015295"},{"annotations":[101186],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097434"},{"annotations":[77429],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008506"},{"annotations":[111854],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005371"},{"annotations":[95033],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015505"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a specific substance or related group of substances from one side of a membrane to the other, up the solute's concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter activity","termid":"GO:0022857"}],"gene_count":95,"genes_by_uniquename":{"SJAG_00057":null,"SJAG_00136":null,"SJAG_00212":null,"SJAG_00233":null,"SJAG_00275":null,"SJAG_00276":null,"SJAG_00339":null,"SJAG_00373":null,"SJAG_00516":null,"SJAG_00522":null,"SJAG_00547":null,"SJAG_00601":null,"SJAG_00612":null,"SJAG_00755":null,"SJAG_00976":null,"SJAG_01033":null,"SJAG_01059":null,"SJAG_01077":null,"SJAG_01129":null,"SJAG_01145":null,"SJAG_01183":null,"SJAG_01190":null,"SJAG_01344":null,"SJAG_01355":null,"SJAG_01397":null,"SJAG_01400":null,"SJAG_01406":null,"SJAG_01435":null,"SJAG_01447":null,"SJAG_01471":null,"SJAG_01490":null,"SJAG_01541":null,"SJAG_01669":null,"SJAG_01817":null,"SJAG_01872":null,"SJAG_01913":null,"SJAG_01960":null,"SJAG_02023":null,"SJAG_02050":null,"SJAG_02077":null,"SJAG_02399":null,"SJAG_02457":null,"SJAG_02463":null,"SJAG_02504":null,"SJAG_02602":null,"SJAG_02646":null,"SJAG_02779":null,"SJAG_02780":null,"SJAG_02782":null,"SJAG_02958":null,"SJAG_03337":null,"SJAG_03363":null,"SJAG_03401":null,"SJAG_03406":null,"SJAG_03490":null,"SJAG_03497":null,"SJAG_03502":null,"SJAG_03515":null,"SJAG_03560":null,"SJAG_03595":null,"SJAG_03606":null,"SJAG_03608":null,"SJAG_03785":null,"SJAG_03820":null,"SJAG_03850":null,"SJAG_03866":null,"SJAG_03951":null,"SJAG_03960":null,"SJAG_04015":null,"SJAG_04028":null,"SJAG_04068":null,"SJAG_04096":null,"SJAG_04152":null,"SJAG_04167":null,"SJAG_04241":null,"SJAG_04258":null,"SJAG_04277":null,"SJAG_04406":null,"SJAG_04506":null,"SJAG_04616":null,"SJAG_04673":null,"SJAG_04698":null,"SJAG_04714":null,"SJAG_04757":null,"SJAG_04905":null,"SJAG_04955":null,"SJAG_05213":null,"SJAG_05294":null,"SJAG_05629":null,"SJAG_07006":null,"SJAG_07007":null,"SJAG_MIT03":null,"SJAG_MIT04":null,"SJAG_MIT13":null,"SJAG_MIT20":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"active transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"active carrier activity","type":"exact"},{"name":"carrier activity","type":"exact"},{"name":"permease activity","type":"exact"},{"name":"pump activity","type":"exact"}],"termid":"GO:0022804","terms_by_termid":{"GO:0000515":null,"GO:0004129":null,"GO:0005315":null,"GO:0005351":null,"GO:0005358":null,"GO:0005364":null,"GO:0005366":null,"GO:0005371":null,"GO:0005388":null,"GO:0005452":null,"GO:0005471":null,"GO:0008121":null,"GO:0008137":null,"GO:0008271":null,"GO:0008506":null,"GO:0008553":null,"GO:0008554":null,"GO:0008559":null,"GO:0008900":null,"GO:0010486":null,"GO:0015295":null,"GO:0015297":null,"GO:0015366":null,"GO:0015369":null,"GO:0015379":null,"GO:0015385":null,"GO:0015386":null,"GO:0015410":null,"GO:0015421":null,"GO:0015450":null,"GO:0015505":null,"GO:0015662":null,"GO:0019829":null,"GO:0034216":null,"GO:0043682":null,"GO:0044604":null,"GO:0046715":null,"GO:0046961":null,"GO:0071913":null,"GO:0097434":null,"GO:0140358":null,"GO:0140359":null,"GO:0140481":null,"GO:0140581":null,"GO:0140987":null}}


id: PBO:0050284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H6 family homeobox 1","termid":"PBO:0050284"}


id: PBO:0087069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L34A; homologous to mammalian ribosomal protein L34, no bacterial homolog; RPL34A has a paralog, RPL34B, that arose from the whole genome duplication","termid":"PBO:0087069"}


id: MONDO:0060662
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Diamond-Blackfan anemia-like","secondary_identifiers":["UMLS:C4693556","MEDGEN:1633207","OMIM:617911"],"synonyms":[{"name":"DBAL","type":"related"},{"name":"Diamond-Blackfan anemia-like","type":"exact"}],"termid":"MONDO:0060662","xrefs":{"Monarch":{"xref_id":"0060662"}}}


id: PBO:0080210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vestigial like family member 4","termid":"PBO:0080210"}


id: FYPO:0004083
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell is normal (i.e. indistinguishable from wild type). Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in cell","termid":"FYPO:0001076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal protein level","synonyms":[{"name":"protein/peptide accumulation: normal","type":"related"}],"termid":"FYPO:0004083"}


id: PBO:0024869
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not bind rpb1 CTD peptides in vitro","termid":"PBO:0024869"}


id: GO:0048535
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes.","definition_xrefs":["GOC:add","ISBN:068340007X","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hematopoietic or lymphoid organ development","termid":"GO:0048534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lymph node development","synonyms":[{"name":"lymph gland development","type":"broad"}],"termid":"GO:0048535"}


id: FYPO:0000920
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of aconitate hydratase (also known as aconitase) activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000707","FYPO:0000661","FYPO:0001985"],"is_obsolete":false,"name":"abnormal aconitate hydratase activity","synonyms":[{"name":"abnormal aconitase activity","type":"exact"}],"termid":"FYPO:0000920"}


id: PBO:0064536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase mitochondrial pseudogene 1","termid":"PBO:0064536"}


id: PBO:0049204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate ionotropic receptor kainate type subunit 4","termid":"PBO:0049204"}


id: PBO:0047213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAM222A antisense RNA 1","termid":"PBO:0047213"}


id: PBO:0047122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAM167A antisense RNA 1","termid":"PBO:0047122"}


id: PBO:0075380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRY-box transcription factor 18","termid":"PBO:0075380"}


id: MONDO:0033948
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"acquired angioedema","termid":"MONDO:0019624"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"acquired angioedema with C1Inh deficiency","secondary_identifiers":["GARD:22196","Orphanet:528663","UMLS:C5848086","MEDGEN:1846342"],"termid":"MONDO:0033948","xrefs":{"Monarch":{"xref_id":"0033948"}}}


id: PBO:0071053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 55","termid":"PBO:0071053"}


id: GO:0019555
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-glutamate into other compounds, including ornithine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-glutamate catabolic process","termid":"GO:0006538"},{"relation_name":"is_a","term_name":"ornithine metabolic process","termid":"GO:0006591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"L-glutamate catabolic process to ornithine","secondary_identifiers":["MetaCyc:GLUTORN-PWY"],"synonyms":[{"name":"glutamate breakdown to ornithine","type":"exact"},{"name":"glutamate degradation to ornithine","type":"exact"}],"termid":"GO:0019555"}


id: GO:0042066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Glial cell growth that occurs in the perineurium, a cell layer that ensheaths projections of peripheral nerves, such as motor axons.","definition_xrefs":["GOC:mah","PMID:11517334","PMID:18176560"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell growth","termid":"GO:0042065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"perineurial glial growth","termid":"GO:0042066"}


id: PBO:0049820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase 11","termid":"PBO:0049820"}


id: FYPO:0007161
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show decreased sensitivity to oxidative stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"resistance to stress during vegetative growth","termid":"FYPO:0000850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"resistance to oxidative stress","synonyms":[{"name":"increased growth during cellular response to oxidative stress","type":"exact"},{"name":"increased vegetative cell population growth during cellular response to oxidative stress","type":"exact"},{"name":"resistance to oxidative stress during mitotic cell cycle","type":"related"},{"name":"resistance to oxidative stress during vegetative growth","type":"exact"},{"name":"resistant to oxidative stress","type":"exact"}],"termid":"FYPO:0007161"}


id: FYPO:0005193
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of torin1 than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002682"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002682","FYPO:0000139","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"resistance to torin1","synonyms":[{"name":"resistance to torin 1","type":"exact"},{"name":"resistance to torin1 during mitotic cell cycle","type":"related"},{"name":"resistance to torin1 during vegetative growth","type":"exact"},{"name":"resistant to torin1","type":"exact"}],"termid":"FYPO:0005193"}


id: GO:0050262
data:
  {"annotated_genes":["SJAG_04693"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[112681],"is_not":false,"summary":null,"term":"GO:0050262"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-nicotinamide D-riboside + ATP = beta-nicotinamide D-ribonucleotide + ADP + H+.","definition_xrefs":["RHEA:14017","PMID:17914902"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04693":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016301","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"ribosylnicotinamide kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R02324","GO:0000816","EC:2.7.1.22","MetaCyc:RIBOSYLNICOTINAMIDE-KINASE-RXN","Reactome:R-HSA-8869627","Reactome:R-HSA-8869633"],"synonyms":[{"name":"ATP:N-ribosylnicotinamide 5'-phosphotransferase activity","type":"related"},{"name":"nicotinamide riboside kinase activity","type":"exact"},{"name":"ribosylnicotinamide kinase (phosphorylating)","type":"related"}],"termid":"GO:0050262","terms_by_termid":{"GO:0050262":null}}


id: FYPO:0005906
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cgontractile ring contraction begins at the normal (i.e. indistinguishable from wild type) time relative to other cell cycle events.","definition_xrefs":["PomBase:mah","PMID:19570908"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal actin cytoskeleton organization","termid":"FYPO:0001366"},{"relation_name":"is_a","term_name":"normal actomyosin contractile ring contraction","termid":"FYPO:0004097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal onset of actomyosin contractile ring contraction","synonyms":[{"name":"normal dwell time before actomyosin contractile ring contraction","type":"exact"},{"name":"normal onset of actomyosin contractile ring contraction during mitotic cell cycle","type":"related"},{"name":"normal onset of actomyosin contractile ring contraction during vegetative growth","type":"exact"},{"name":"normal onset of contractile ring contraction","type":"exact"},{"name":"normal onset of cytokinetic contractile ring contraction","type":"exact"},{"name":"normal onset of cytokinetic ring contraction","type":"related"},{"name":"normal onset of mitotic contractile ring contraction","type":"exact"},{"name":"normal timing of actomyosin contractile ring contraction","type":"related"}],"termid":"FYPO:0005906"}


id: PBO:0082324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase of the 19S regulatory particle of the 26S proteasome; one of six ATPases of the regulatory particle; involved in the degradation of ubiquitinated substrates; bound by ubiquitin-protein ligases Ubr1p and Ufd4p; localized mainly to the nucleus throughout the cell cycle; protein abundance increases in response to DNA replication stress","termid":"PBO:0082324"}


id: MONDO:0016693
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign, slowly growing tumor (WHO grade I) typically arising in the wall of the lateral ventricles and composed of large ganglioid astrocytes. It is the most common CNS neoplasm in patients with tuberous sclerosis complex and typically occurs during the first two decades of life. (WHO)","definition_xrefs":["NCIT:C3696"],"direct_ancestors":[{"relation_name":"is_a","term_name":"subependymoma","termid":"MONDO:0007667"},{"relation_name":"is_a","term_name":"low-grade astrocytoma","termid":"MONDO:0016685"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"subependymal giant cell astrocytoma","secondary_identifiers":["Orphanet:251618","SCTID:449799008","UMLS:C0205768","MEDGEN:61446","DOID:5077","ICDO:9384/1","GARD:10632"],"synonyms":[{"name":"SEGA","type":"exact"},{"name":"subependymal giant cell astrocytic neoplasm","type":"exact"},{"name":"subependymal giant cell astrocytic tumor","type":"exact"},{"name":"subependymal giant cell astrocytic tumour","type":"exact"},{"name":"subependymal giant cell astrocytoma (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0016693","xrefs":{"Monarch":{"xref_id":"0016693"}}}


id: MONDO:0000876
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete herpes simplex virus keratitis (obsolete MONDO:0000876)","termid":"MONDO:0000876","xrefs":{"Monarch":{"xref_id":"0000876"}}}


id: PBO:0081714
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 639","termid":"PBO:0081714"}


id: PBO:0059982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4L pseudogene 2","termid":"PBO:0059982"}


id: GO:0140449
data:
  {"annotated_genes":["SJAG_01745"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90821],"is_not":false,"summary":null,"term":"GO:0140449"}]},"cv_name":"molecular_function","definition":"The binding activity of a molecule that brings together the centromeric region of a chromosome and the inner nuclear membrane by interacting with both the centromere/kinetochore complex and the nuclear membrane, in order to establish and maintain the centromere/kinetochore location.","definition_xrefs":["PMID:31635174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane-membrane adaptor activity","termid":"GO:0043495"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01745":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0030674","GO:0003674","GO:0060090"],"is_obsolete":false,"name":"centromere-nuclear envelope anchor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"centromere nuclear envelope anchor activity","type":"exact"},{"name":"centromere nuclear envelope tether activity","type":"exact"},{"name":"centromere-inner nuclear envelope anchor activity","type":"exact"},{"name":"centromere-inner nuclear envelope tether activity","type":"exact"},{"name":"chromosome, centromeric region-nuclear envelope anchor activity","type":"exact"},{"name":"nuclear envelope-centromere anchor activity","type":"exact"},{"name":"nuclear envelope-centromere tether activity","type":"exact"}],"termid":"GO:0140449","terms_by_termid":{"GO:0140449":null}}


id: GO:0009334
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Enzyme complex consisting of four proteins: the two subunits of the hydroxylase component (hcaE and hcaF), a ferredoxin (hcaC) and a ferredoxin reductase (hcaD). Converts 3-phenylpropionic acid (PP) into cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol (PP-dihydrodiol).","definition_xrefs":["GOC:jl","MetaCyc:HCAMULTI-CPLX","PMID:9603882"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"3-phenylpropionate dioxygenase complex","termid":"GO:0009334"}


id: PBO:0051610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 34","termid":"PBO:0051610"}


id: GO:0060907
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of macrophage cytokine production. Macrophage cytokine production is the appearance of a chemokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of macrophage cytokine production","termid":"GO:0010935"},{"relation_name":"is_a","term_name":"positive regulation of myeloid leukocyte cytokine production involved in immune response","termid":"GO:0061081"},{"relation_name":"positively_regulates","term_name":"macrophage cytokine production","termid":"GO:0010934"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of macrophage cytokine production","termid":"GO:0060907"}


id: PBO:0077994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TraB domain containing 2B","termid":"PBO:0077994"}


id: PATO:0002022
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A concave 3-D shape quality inhering in a bearer by virtue of the bearer's resembling a minute projection (villus).","definition_xrefs":["PATOC:PEM"],"direct_ancestors":[{"relation_name":"is_a","term_name":"concave 3-D shape","termid":"PATO:0002008"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"villiform","termid":"PATO:0002022"}


id: MONDO:0006868
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Loss or absence of normal intestinal function due to nerve damage or birth defects. It is characterized by the inability to control the elimination of stool from the body.","definition_xrefs":["MESH:D055496"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal disorder","termid":"MONDO:0005020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"neurogenic bowel","secondary_identifiers":["ICD9:564.81","MEDGEN:151969","DOID:13419","MedDRA:10048657","SCTID:425671009","UMLS:C0695242"],"termid":"MONDO:0006868","xrefs":{"Monarch":{"xref_id":"0006868"}}}


id: GO:0006024
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glycosaminoglycans, any one of a group of linear polysaccharides composed of repeating disaccharide units.","definition_xrefs":["PMID:38500384"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoglycan biosynthetic process","termid":"GO:0006023"},{"relation_name":"is_a","term_name":"glycosaminoglycan metabolic process","termid":"GO:0030203"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glycosaminoglycan biosynthetic process","synonyms":[{"name":"glycosaminoglycan anabolism","type":"exact"},{"name":"glycosaminoglycan biosynthesis","type":"exact"},{"name":"glycosaminoglycan formation","type":"exact"},{"name":"glycosaminoglycan synthesis","type":"exact"}],"termid":"GO:0006024"}


id: MONDO:0019298
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Rare urticaria.","gene_count":0,"genotype_count":0,"name":"obsolete rare urticaria (obsolete MONDO:0019298)","secondary_identifiers":["Orphanet:79384"],"synonyms":[{"name":"rare hives","type":"exact"},{"name":"rare urticaria","type":"exact"},{"name":"rare urticaria (disease)","type":"exact"}],"termid":"MONDO:0019298","xrefs":{"Monarch":{"xref_id":"0019298"}}}


id: PBO:0089811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Swr1 complex histone chaperone module subunit Swc3","termid":"PBO:0089811"}


id: FYPO:0002498
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of protein modification is decreased. All modifications may be affected, or only modifications of a certain type, or on specific proteins, or even specific sites within specific proteins.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein modification","termid":"FYPO:0002494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0002274","FYPO:0002494","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein modification","synonyms":[{"name":"decreased protein/peptide modification","type":"exact"},{"name":"protein/peptide modification: decreased","type":"related"},{"name":"reduced protein modification","type":"exact"}],"termid":"FYPO:0002498"}


id: PBO:0050764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family E (Hsp10) member 1 pseudogene 26","termid":"PBO:0050764"}


id: PBO:0043736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6C pseudogene 15","termid":"PBO:0043736"}


id: GO:0018042
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a C-terminal peptidyl-histidine amide by hydrolysis and oxidation of an interior His-Gly peptide in a secreted protein.","definition_xrefs":["RESID:AA0089"],"gene_count":0,"genotype_count":0,"name":"obsolete C-terminal peptidyl-histidine amidation (obsolete GO:0018042)","termid":"GO:0018042"}


id: PBO:0073228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO specific peptidase 1","termid":"PBO:0073228"}


id: PBO:0112982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5' to 3' exonuclease, 5' flap endonuclease; required for Okazaki fragment processing and maturation, for long-patch base-excision repair and large loop repair (LLR), ribonucleotide excision repair; cleaves off RNA flap in a RNA:DNA hybrid intermediate during processing of DNA lagging strand; relocalizes to the cytosol in response to hypoxia; member of the S. pombe RAD2/FEN1 family","termid":"PBO:0112982"}


id: PBO:0064608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POU class 4 homeobox 2","termid":"PBO:0064608"}


id: PBO:0091512
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"although the specificity is different Imt1/A4GALT are in equivalent pathway postitions","termid":"PBO:0091512"}


id: PBO:0003091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage factor complex subunit (predicted)","termid":"PBO:0003091"}


id: PBO:0051048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 1/OR15-1A (non-functional)","termid":"PBO:0051048"}


id: GO:0072699
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained at, a location within the cortical microtubule cytoskeleton.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to cell cortex","termid":"GO:0072697"},{"relation_name":"is_a","term_name":"protein localization to microtubule cytoskeleton","termid":"GO:0072698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to cortical microtubule cytoskeleton","synonyms":[{"name":"protein localisation to cortical microtubule cytoskeleton","type":"exact"}],"termid":"GO:0072699"}


id: SO:0002115
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcript supported by EST and/or mRNA evidence that aligns unambiguously to the pseudogene locus; has retained intronic sequence compared to a reference transcript sequence.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary_transcript","termid":"SO:0000185"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogenic_transcript_with_retained_intron","synonyms":[{"name":"pseudogene retained intron","type":"exact"}],"termid":"SO:0002115"}


id: PBO:0040178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"asparaginase","termid":"PBO:0040178"}


id: MONDO:0015079
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete inherited neuroendocrine tumor (obsolete MONDO:0025511)","termid":"MONDO:0025511"},{"relation_name":"is_a","term_name":"polyendocrinopathy","termid":"MONDO:0015126"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multiple polyglandular tumor","secondary_identifiers":["UMLS:C5848154","MEDGEN:1863613","Orphanet:100094","GARD:19766","ICD10WHO:D44.8","icd11.foundation:1316827435"],"termid":"MONDO:0015079","xrefs":{"Monarch":{"xref_id":"0015079"}}}


id: GO:0016630
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: chlorophyllide a + NADP+ = protochlorophyllide + NADPH + H+.","definition_xrefs":["EC:1.3.1.33"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"protochlorophyllide reductase activity","secondary_identifiers":["MetaCyc:RXN1F-10","RHEA:11132"],"synonyms":[{"name":"NADPH-protochlorophyllide oxidoreductase activity","type":"related"},{"name":"NADPH-protochlorophyllide reductase activity","type":"related"},{"name":"NADPH2-protochlorophyllide oxidoreductase activity","type":"related"},{"name":"chlorophyllide-a:NADP+ 7,8-oxidoreductase activity","type":"related"},{"name":"protochlorophyllide oxidoreductase activity","type":"related"},{"name":"protochlorophyllide photooxidoreductase activity","type":"related"}],"termid":"GO:0016630"}


id: MONDO:0033853
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital cataract-severe neonatal hepatopathy-global developmental delay syndrome","secondary_identifiers":["UMLS:C5681444","GARD:22144","MEDGEN:1814478","Orphanet:521432"],"termid":"MONDO:0033853","xrefs":{"Monarch":{"xref_id":"0033853"}}}


id: FYPO:0002830
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein phosphorylation during vegetative growth","termid":"FYPO:0000775"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0001320","FYPO:0000002","FYPO:0002494","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of protein phosphorylation during vegetative growth","synonyms":[{"name":"delayed onset of protein phosphorylation during mitotic cell cycle","type":"related"},{"name":"delayed onset of protein/peptide phosphorylation during vegetative growth","type":"exact"},{"name":"delayed protein phosphorylation during vegetative growth","type":"exact"}],"termid":"FYPO:0002830"}


id: PBO:0057969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3689b","termid":"PBO:0057969"}


id: GO:0003410
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A 90 degree-rotation of the optic cup resulting in its alignment with the anterior-posterior body axis.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"camera-type eye development","termid":"GO:0043010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior rotation of the optic cup","termid":"GO:0003410"}


id: PR:Q09672
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 3-methyl-2-oxobutanoate hydroxymethyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00057"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-methyl-2-oxobutanoate hydroxymethyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC5H10.09c","secondary_identifiers":["UniProtKB:Q09672"],"synonyms":[{"name":"Spom972h-panB","type":"exact"},{"name":"ketopantoate hydroxymethyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09672"}


id: PR:O13935
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- trm402 gene.","definition_xrefs":["UniProtKB:O13935","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23C4.17","synonyms":[{"name":"Spom972h-trm402","type":"exact"},{"name":"tRNA (cytosine-5-)-methyltransferase trm4b (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13935"}


id: PBO:0086777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; SWAT-GFP and mCherry fusion proteins localize to the endoplasmic reticulum; identified based on homology to <i>Ashbya gossypii</i>","termid":"PBO:0086777"}


id: PBO:0082516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of the NatC type N-terminal acetyltransferase (NAT); involved in subcellular targeting of select N-terminally acetylated substrates to the Golgi apparatus (Arl3p and Grh1p) and the inner nuclear membrane (Trm1p); required for replication of dsRNA virus; human NatC ortholog, NAA30, functionally complements the null, requiring either auxiliary subunit Mak10p or co-expression of human ortholog, NAA35; NAA60, the human NatF gene, also complements the null allele","termid":"PBO:0082516"}


id: PBO:0043498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contactin 5","termid":"PBO:0043498"}


id: MOD:00197
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-glutamine residue and a glycine residue to form 2-imino-glutamine 5-imidazolinone glycine.","definition_xrefs":["PubMed:11050230","PubMed:11209050","RESID:AA0189"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5-imidazolinone ring crosslinked residues (Gly)","termid":"MOD:01882"},{"relation_name":"is_a","term_name":"crosslinked L-glutamine residue","termid":"MOD:02046"},{"relation_name":"is_a","term_name":"crosslinked glycine residue","termid":"MOD:02047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-imino-glutamine 5-imidazolinone glycine","synonyms":[{"name":"2,N-didehydroglutaminyl-5-imidazolinone glycine","type":"exact"},{"name":"2-(3-carbamoyl-1-imino-propyl)-1-carboxymethyl-1-imidazolin-5-one","type":"exact"},{"name":"2-imino-glutamine 5-imidazolinone glycine","type":"exact"},{"name":"CROSSLNK 2-iminomethyl-5-imidazolinone (Gln-Gly)","type":"exact"},{"name":"[2-(3-carbamoyl-1-imino-propyl)-5-oxo-4,5-dihydro-imidazol-1-yl]-acetic acid","type":"exact"},{"name":"[2-(4-amino-4-oxobutanimidoyl)-5-oxo-4,5-dihydro-1H-imidazol-1-yl]acetic acid","type":"exact"},{"name":"fluorescent protein FP583 chromophore","type":"exact"},{"name":"para-hydroxybenzylidene-imidazolidinone chromophore","type":"exact"},{"name":"red fluorescent protein chromophore","type":"exact"}],"termid":"MOD:00197"}


id: PBO:0065291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paired related homeobox 1","termid":"PBO:0065291"}


id: MONDO:0005924
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pneumocystosis (obsolete MONDO:0005924)","termid":"MONDO:0005924","xrefs":{"Monarch":{"xref_id":"0005924"}}}


id: PBO:0055368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2797","termid":"PBO:0055368"}


id: PBO:0091650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane inorganic phosphate transmembrane transporter Pho841","termid":"PBO:0091650"}


id: PR:O94259
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- utp16 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94259"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 small nucleolar RNA-associated protein 16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP8B7.10c","synonyms":[{"name":"Spom972h-utp16","type":"exact"},{"name":"U3 snoRNA-associated protein 16 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94259"}


id: GO:0050029
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + L-lysine + O2 = 6-amino-2-oxohexanoate + H2O2 + NH4+.","definition_xrefs":["RHEA:14437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-amino-acid oxidase activity","termid":"GO:0001716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"L-lysine oxidase activity","secondary_identifiers":["EC:1.4.3.14","KEGG_REACTION:R00447","MetaCyc:L-LYSINE-OXIDASE-RXN"],"synonyms":[{"name":"L-lysine alpha-oxidase activity","type":"related"},{"name":"L-lysine:oxygen 2-oxidoreductase (deaminating)","type":"related"},{"name":"L-lysyl-alpha-oxidase activity","type":"related"}],"termid":"GO:0050029"}


id: GO:0102605
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: cyclooctat-9-en-5,7-diol + O2 + NADPH + H+ = cyclooctatin + H2O + NADP.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete cyclooctat-9-en-5,7-diol C18-monooxygenase activity (obsolete GO:0102605)","termid":"GO:0102605"}


id: PBO:0000921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase, TRAMP complex subunit Mtr4","termid":"PBO:0000921"}


id: PBO:0043830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cleavage and polyadenylation specific factor 2","termid":"PBO:0043830"}


id: PBO:0062664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 13 subfamily F member 1","termid":"PBO:0062664"}


id: PBO:0084810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein of unknown function; localized to the mitochondrial outer membrane","termid":"PBO:0084810"}


id: GO:0034911
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: phthalate + O2 + NADH + H+ = phthalate 3,4-cis-dihydrodiol + NAD+.","definition_xrefs":["UM-BBD_reactionID:r1444"],"gene_count":0,"genotype_count":0,"name":"obsolete phthalate 3,4-dioxygenase activity (obsolete GO:0034911)","termid":"GO:0034911"}


id: MONDO:0014340
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any familial atrial fibrillation in which the cause of the disease is a mutation in the NUP155 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial atrial fibrillation","termid":"MONDO:0018054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"atrial fibrillation, familial, 15","secondary_identifiers":["UMLS:C4014269","OMIM:615770","GARD:16010","MEDGEN:862706"],"synonyms":[{"name":"ATFB15","type":"related"},{"name":"NUP155 familial atrial fibrillation","type":"exact"},{"name":"atrial fibrillation 15","type":"exact"},{"name":"atrial fibrillation, familial, 15","type":"exact"},{"name":"atrial fibrillation, familial, type 15","type":"exact"},{"name":"familial atrial fibrillation caused by mutation in NUP155","type":"exact"}],"termid":"MONDO:0014340","xrefs":{"Monarch":{"xref_id":"0014340"}}}


id: MOD:01607
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to 5-glutamyl allysine.","definition_xrefs":["RESID:AA0504","PubMed:19620981"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amidated residue","termid":"MOD:00674"},{"relation_name":"is_a","term_name":"modified L-glutamic acid residue","termid":"MOD:00906"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-glutamyl allysine","synonyms":[{"name":"(2S)-2-([(4S)-4-amino-4-carboxybutanoyl]amino)-6-oxohexanoic acid","type":"exact"},{"name":"2-(5-glutamyl)amino-6-oxohexanoic acid","type":"exact"},{"name":"5-glutamyl allysine","type":"exact"},{"name":"N2-(gamma-glutamyl)allysine","type":"exact"},{"name":"N2-(isoglutamyl)allysine","type":"exact"},{"name":"alpha-(gamma-glutamyl)allysine","type":"exact"}],"termid":"MOD:01607"}


id: GO:0008811
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: chloramphenicol + acetyl-CoA = chloramphenicol 3-acetate + CoA.","definition_xrefs":["EC:2.3.1.28","RHEA:18421"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acetyltransferase activity","termid":"GO:0016413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"chloramphenicol O-acetyltransferase activity","secondary_identifiers":["KEGG_REACTION:R03065","MetaCyc:CHLORAMPHENICOL-O-ACETYLTRANSFERASE-RXN"],"synonyms":[{"name":"CAT I","type":"related"},{"name":"CAT II","type":"related"},{"name":"CAT III","type":"related"},{"name":"acetyl-CoA:chloramphenicol 3-O-acetyltransferase activity","type":"related"},{"name":"chloramphenicol acetylase activity","type":"related"},{"name":"chloramphenicol acetyltransferase activity","type":"related"},{"name":"chloramphenicol transacetylase activity","type":"related"}],"termid":"GO:0008811"}


id: PBO:0042777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 89","termid":"PBO:0042777"}


id: PBO:0004938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP-associated protein Uap2","termid":"PBO:0004938"}


id: PBO:0113186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lipid scramblase that mediates autophagosomal membrane expansion; translocates phospholipids between outer and inner leaflets of liposomes; transmembrane protein involved in forming Cvt and autophagic vesicles; cycles between phagophore assembly site (PAS) and other cytosolic punctate structures","termid":"PBO:0113186"}


id: PBO:0065642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase non-receptor type 20C, pseudogene","termid":"PBO:0065642"}


id: PBO:0073416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET pseudogene 22","termid":"PBO:0073416"}


id: PBO:0119949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase complex assembly protein Sdh5","termid":"PBO:0119949"}


id: SO:0002177
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A duplication that is the result of base-calling or assembly error.","direct_ancestors":[{"relation_name":"is_a","term_name":"insertion_artifact","termid":"SO:0002175"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"duplication_artifact","synonyms":[{"name":"duplication artifact","type":"exact"}],"termid":"SO:0002177"}


id: GO:0009293
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A type of horizontal gene transfer in which genetic material is introduced into a cell mediated by a virus.","definition_xrefs":["PMID:18265289","PMID:33597173"],"direct_ancestors":[{"relation_name":"is_a","term_name":"horizontal gene transfer","termid":"GO:0009292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"transduction","secondary_identifiers":["Wikipedia:Transduction_(genetics)"],"termid":"GO:0009293"}


id: MONDO:0022888
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cataract","termid":"MONDO:0005129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"craniostenosis cataract","termid":"MONDO:0022888","xrefs":{"Monarch":{"xref_id":"0022888"}}}


id: PBO:0049168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRB2 related adaptor protein 2","termid":"PBO:0049168"}


id: GO:1900018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any phosphorylation of RNA polymerase II C-terminal domain serine 5 residues that is involved in recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex.","definition_xrefs":["GOC:rb","PMID:10594013","PMID:19666497","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete phosphorylation of RNA polymerase II C-terminal domain serine 5 residues involved in recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex (obsolete GO:1900018)","termid":"GO:1900018"}


id: MONDO:1012553
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"retained placenta, non-human animal","termid":"MONDO:1011922"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retained placenta, cattle","secondary_identifiers":["OMIA:002475-9913"],"termid":"MONDO:1012553","xrefs":{"Monarch":{"xref_id":"1012553"}}}


id: GO:2000016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of determination of dorsal identity.","definition_xrefs":["GOC:obol","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of determination of dorsal identity","termid":"GO:2000015"},{"relation_name":"negatively_regulates","term_name":"determination of dorsal identity","termid":"GO:0048263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of determination of dorsal identity","synonyms":[{"name":"negative regulation of determination of adaxial identity","type":"related"}],"termid":"GO:2000016"}


id: GO:0000826
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the phosphorylation of inositol phosphates which possess diphosphate bonds.","definition_xrefs":["PMID:16429326","GOC:elh"],"gene_count":0,"genotype_count":0,"name":"obsolete inositol pyrophosphate synthase activity (obsolete GO:0000826)","synonyms":[{"name":"inositol diphosphate synthase activity","type":"exact"},{"name":"inositol pyrophosphate synthase activity","type":"exact"}],"termid":"GO:0000826"}


id: GO:1990544
data:
  {"annotated_genes":["SJAG_02050","SJAG_00612"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[59112,102384],"is_not":false,"summary":null,"term":"GO:1990544"}]},"cv_name":"biological_process","definition":"The process in which ATP is transported across a mitochondrial membrane, into or out of the mitochondrion.","definition_xrefs":["PMID:18485069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP transport","termid":"GO:0015867"},{"relation_name":"is_a","term_name":"purine-containing compound transmembrane transport","termid":"GO:0072530"},{"relation_name":"is_a","term_name":"nucleotide transmembrane transport","termid":"GO:1901679"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00612":null,"SJAG_02050":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"mitochondrial ATP transmembrane transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"termid":"GO:1990544","terms_by_termid":{"GO:1990544":null}}


id: MONDO:1011970
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"asymmetrical occipital condylar dysplasia, non-human animal","secondary_identifiers":["OMIA:002422"],"termid":"MONDO:1011970","xrefs":{"Monarch":{"xref_id":"1011970"}}}


id: GO:0007064
data:
  {"annotated_genes":["SJAG_01067","SJAG_04508","SJAG_03377","SJAG_04791","SJAG_02606","SJAG_01601","SJAG_00433","SJAG_00796","SJAG_02373","SJAG_00806","SJAG_02726","SJAG_03418","SJAG_00682","SJAG_05019","SJAG_04755","SJAG_01831"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57559,63462,68148,68458,71690,72260,72674,73858,87610,100354,107293,110128],"is_not":false,"summary":null,"term":"GO:0007064"},{"annotations":[76790,100455],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034087"},{"annotations":[90391,98633],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071962"}]},"cv_name":"biological_process","definition":"The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the entire length of the chromosome, from their formation in S phase through metaphase during a mitotic cell cycle. This cohesion cycle is critical for high fidelity chromosome transmission.","definition_xrefs":["PMID:14623866","GOC:ai","PMID:11389843","GOC:rn","PMID:10827941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sister chromatid cohesion","termid":"GO:0007062"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00433":null,"SJAG_00682":null,"SJAG_00796":null,"SJAG_00806":null,"SJAG_01067":null,"SJAG_01601":null,"SJAG_01831":null,"SJAG_02373":null,"SJAG_02606":null,"SJAG_02726":null,"SJAG_03377":null,"SJAG_03418":null,"SJAG_04508":null,"SJAG_04755":null,"SJAG_04791":null,"SJAG_05019":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"mitotic sister chromatid cohesion","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"termid":"GO:0007064","terms_by_termid":{"GO:0007064":null,"GO:0034087":null,"GO:0071962":null}}


id: PBO:0060775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B8 pseudogene 1","termid":"PBO:0060775"}


id: PBO:0055258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2685","termid":"PBO:0055258"}


id: PBO:0030446
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_phosphatase_activity","termid":"PBO:0030446"}


id: PBO:0071550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 15","termid":"PBO:0071550"}


id: PBO:0038806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase domain 10","termid":"PBO:0038806"}


id: GO:0008900
data:
  {"annotated_genes":["SJAG_04167"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[111938],"is_not":false,"summary":null,"term":"GO:0008900"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) + K+(out) = ADP + phosphate + H+(out) + K+(in).","definition_xrefs":["RHEA:22044"],"direct_ancestors":[{"relation_name":"is_a","term_name":"P-type proton-exporting transporter activity","termid":"GO:0008553"},{"relation_name":"is_a","term_name":"P-type potassium transmembrane transporter activity","termid":"GO:0008556"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04167":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"P-type potassium:proton transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:3.6.3.10-RXN","Reactome:R-HSA-937311","GO:0005390","EC:7.2.2.19","Reactome:R-HSA-9727198"],"synonyms":[{"name":"(K+ + H+)-ATPase activity","type":"related"},{"name":"ATP phosphohydrolase (H+/K+-exchanging)","type":"related"},{"name":"H+-K+-ATPase activity","type":"related"},{"name":"H+/K(+)-ATPase activity","type":"related"},{"name":"H+/K(+)-exchanging ATPase activity","type":"related"},{"name":"H+/K+-ATPase activity","type":"related"},{"name":"H+/K+-exchanging ATPase activity","type":"related"},{"name":"H,K-ATPase activity","type":"related"},{"name":"gastric H+/K(+) ATPase activity","type":"narrow"},{"name":"gastric H+/K+ ATPase","type":"narrow"},{"name":"hydrogen/potassium-exchanging ATPase activity","type":"exact"},{"name":"hydrogen:potassium exchanging ATPase activity","type":"exact"},{"name":"hydrogen:potassium-exchanging ATPase activity","type":"exact"},{"name":"potassium:proton exchanging ATPase activity","type":"related"},{"name":"proton pump activity","type":"broad"}],"termid":"GO:0008900","terms_by_termid":{"GO:0008900":null}}


id: FYPO:0004806
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the cell wall is broken down to a lesser extent than in wild type at the site of cell-cell fusion during mating.","definition_xrefs":["PomBase:mah","PMID:25825517"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell wall disassembly at cell fusion site","termid":"FYPO:0006499"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0004805"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000301"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0004805","FYPO:0001985","FYPO:0000301","FYPO:0000002"],"is_obsolete":false,"name":"incomplete cell wall disassembly at cell fusion site","synonyms":[{"name":"incomplete cell wall disassembly at cell fusion site during conjugation with cellular fusion","type":"exact"},{"name":"incomplete cell wall disassembly at cell fusion site during mating","type":"exact"},{"name":"incomplete cell wall disassembly at cell-cell fusion focus","type":"exact"},{"name":"incomplete cell wall disassembly at cell-cell fusion site","type":"exact"},{"name":"incomplete fungal-type cell wall disassembly at cell fusion site","type":"exact"},{"name":"incomplete fungal-type cell wall disassembly involved in conjugation with cellular fusion","type":"exact"}],"termid":"FYPO:0004806"}


id: PBO:0078994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Thr (anticodon AGT) 2-1","termid":"PBO:0078994"}


id: GO:0046885
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biosynthetic process","termid":"GO:0009889"},{"relation_name":"is_a","term_name":"regulation of hormone metabolic process","termid":"GO:0032350"},{"relation_name":"regulates","term_name":"hormone biosynthetic process","termid":"GO:0042446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of hormone biosynthetic process","synonyms":[{"name":"regulation of hormone anabolism","type":"exact"},{"name":"regulation of hormone biosynthesis","type":"exact"},{"name":"regulation of hormone formation","type":"exact"},{"name":"regulation of hormone synthesis","type":"exact"}],"termid":"GO:0046885"}


id: GO:0050657
data:
  {"annotated_genes":["SJAG_01374","SJAG_01584","SJAG_00641","SJAG_03693","SJAG_05328","SJAG_03358","SJAG_01065","SJAG_04347","SJAG_03986","SJAG_04472","SJAG_02425","SJAG_03300","SJAG_04379","SJAG_01185","SJAG_04310","SJAG_01715","SJAG_03729","SJAG_04083","SJAG_04480","SJAG_03002","SJAG_03156","SJAG_02661","SJAG_01083","SJAG_04536","SJAG_04656","SJAG_04148","SJAG_04721","SJAG_02209","SJAG_02757","SJAG_03299","SJAG_04202","SJAG_02534","SJAG_00992","SJAG_04360","SJAG_00375","SJAG_04589","SJAG_00093","SJAG_00178","SJAG_03593","SJAG_01652","SJAG_01529","SJAG_00471","SJAG_01013","SJAG_02274","SJAG_03283","SJAG_03847","SJAG_04017","SJAG_04115","SJAG_02704","SJAG_02520","SJAG_04645","SJAG_00298","SJAG_03470","SJAG_04622","SJAG_01449","SJAG_01467"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74474,78452,74558,100673,79283,63227,116872,88949,61638,75838,81980],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006406"},{"annotations":[74942],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031990"},{"annotations":[65537,58609,60066],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051028"},{"annotations":[73146,76129,115915,76225,74941,77450,75898,76471,109430,114057,110703,118556,91667,115655,101389,103472,82204,75513,74788,79099,115403,102177,96039,71646,107188,110001,96452,111331,117637,100921],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016973"},{"annotations":[81868,77354,93467,95623,76904,104608],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006405"},{"annotations":[102084],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006404"},{"annotations":[104821,105295,73915,80347],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006409"},{"annotations":[80934],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016031"},{"annotations":[81331],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071528"}]},"cv_name":"biological_process","definition":"The directed movement of nucleic acids, single or double-stranded polynucleotides involved in the storage, transmission and transfer of genetic information, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["ISBN:0198506732","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleobase-containing compound transport","termid":"GO:0015931"}],"gene_count":56,"genes_by_uniquename":{"SJAG_00093":null,"SJAG_00178":null,"SJAG_00298":null,"SJAG_00375":null,"SJAG_00471":null,"SJAG_00641":null,"SJAG_00992":null,"SJAG_01013":null,"SJAG_01065":null,"SJAG_01083":null,"SJAG_01185":null,"SJAG_01374":null,"SJAG_01449":null,"SJAG_01467":null,"SJAG_01529":null,"SJAG_01584":null,"SJAG_01652":null,"SJAG_01715":null,"SJAG_02209":null,"SJAG_02274":null,"SJAG_02425":null,"SJAG_02520":null,"SJAG_02534":null,"SJAG_02661":null,"SJAG_02704":null,"SJAG_02757":null,"SJAG_03002":null,"SJAG_03156":null,"SJAG_03283":null,"SJAG_03299":null,"SJAG_03300":null,"SJAG_03358":null,"SJAG_03470":null,"SJAG_03593":null,"SJAG_03693":null,"SJAG_03729":null,"SJAG_03847":null,"SJAG_03986":null,"SJAG_04017":null,"SJAG_04083":null,"SJAG_04115":null,"SJAG_04148":null,"SJAG_04202":null,"SJAG_04310":null,"SJAG_04347":null,"SJAG_04360":null,"SJAG_04379":null,"SJAG_04472":null,"SJAG_04480":null,"SJAG_04536":null,"SJAG_04589":null,"SJAG_04622":null,"SJAG_04645":null,"SJAG_04656":null,"SJAG_04721":null,"SJAG_05328":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"nucleic acid transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"termid":"GO:0050657","terms_by_termid":{"GO:0006404":null,"GO:0006405":null,"GO:0006406":null,"GO:0006409":null,"GO:0016031":null,"GO:0016973":null,"GO:0031990":null,"GO:0051028":null,"GO:0071528":null}}


id: FYPO:0000591
data:
  {"alleles_by_uniquename":{"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119253],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000595"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transposition is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03689":null},"genotype_count":1,"genotypes_by_uniquename":{"dcr1delta":{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal transposition","references_by_uniquename":{"PMID:35226668":null},"single_locus_annotated_genes":["SJAG_03689"],"single_locus_genotype_uniquenames":["dcr1delta"],"synonyms":[{"name":"abnormal transposable element transposition","type":"exact"},{"name":"abnormal transposition during mitotic cell cycle","type":"related"},{"name":"abnormal transposition during vegetative growth","type":"exact"},{"name":"transposable element transposition: abnormal","type":"related"}],"termid":"FYPO:0000591","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000162":null,"FYPO:0000595":null,"FYPO_EXT:0000001":null}}


id: SO:0001250
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A fingerprint_map is a physical map composed of restriction fragments.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_part","term_name":"restriction_fragment","termid":"SO:0000412"},{"relation_name":"is_a","term_name":"fragment_assembly","termid":"SO:0001249"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fingerprint_map","synonyms":[{"name":"BACmap","type":"exact"},{"name":"FPC","type":"exact"},{"name":"FPCmap","type":"exact"},{"name":"fingerprint map","type":"exact"},{"name":"restriction map","type":"exact"}],"termid":"SO:0001250"}


id: FYPO:0005696
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which nucleation of cytoplasmic microtubules from the interphase microtubule organizing center does not occur. Normally, microtubules are nucleated from interphase microtubule organizing centers (iMTOCs) and from the cytoplasmic face of the spindle pole body (SPB).","definition_xrefs":["PomBase:mah","PMID:19001497"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished cytoplasmic interphase microtubule nucleation","termid":"FYPO:0004766"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000054"],"is_obsolete":false,"name":"abolished cytoplasmic microtubule nucleation from iMTOC","synonyms":[{"name":"abolished cytoplasmic interphase microtubule nucleation from iMTOC","type":"exact"},{"name":"abolished cytoplasmic microtubule nucleation from iMTOC during mitotic interphase","type":"exact"},{"name":"abolished interphase cytoplasmic microtubule nucleation from iMTOC","type":"exact"},{"name":"abolished interphase microtubule nucleation from iMTOC during mitotic cell cycle","type":"exact"},{"name":"abolished interphase microtubule nucleation from iMTOC during vegetative growth","type":"exact"},{"name":"abolished microtubule nucleation from interphase microtubule organizing center","type":"exact"},{"name":"abolished microtubule nucleation from interphase microtubule organizing centre","type":"exact"},{"name":"cytoplasmic microtubule nucleation from iMTOC abolished","type":"exact"}],"termid":"FYPO:0005696"}


id: GO:0055074
data:
  {"annotated_genes":["SJAG_03879","SJAG_03631","SJAG_01400","SJAG_04096","SJAG_04167","SJAG_04892","SJAG_00916","SJAG_02240","SJAG_02532","SJAG_01435","SJAG_03866","SJAG_04698","SJAG_04028","SJAG_02019","SJAG_04757","SJAG_03850","SJAG_03793"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72546],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032468"},{"annotations":[76931,74179,99430,81972,71874,75274,73196,97615,80195,112951,75420,82019,108365,118202,75354,72842],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006874"}]},"cv_name":"biological_process","definition":"Any process involved in the maintenance of an internal steady state of calcium ions within an organism or cell.","definition_xrefs":["GOC:mah","GOC:jid","GOC:ceb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic cation homeostasis","termid":"GO:0055080"},{"relation_name":"is_a","term_name":"inorganic ion homeostasis","termid":"GO:0098771"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00916":null,"SJAG_01400":null,"SJAG_01435":null,"SJAG_02019":null,"SJAG_02240":null,"SJAG_02532":null,"SJAG_03631":null,"SJAG_03793":null,"SJAG_03850":null,"SJAG_03866":null,"SJAG_03879":null,"SJAG_04028":null,"SJAG_04096":null,"SJAG_04167":null,"SJAG_04698":null,"SJAG_04757":null,"SJAG_04892":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098771"}],"interesting_parent_ids":["GO:0098771","GO:0008150"],"is_obsolete":false,"name":"calcium ion homeostasis","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"regulation of calcium ion concentration","type":"exact"}],"termid":"GO:0055074","terms_by_termid":{"GO:0006874":null,"GO:0032468":null}}


id: PBO:0114379
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"removed the human ortholog because XPNPEP1 and XPNPEP1 are fra1, although this could be a divergent paralog of fra1","termid":"PBO:0114379"}


id: PBO:0090314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF5B Tif52","termid":"PBO:0090314"}


id: PBO:0079730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBTF like 7 (pseudogene)","termid":"PBO:0079730"}


id: MONDO:0043083
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"synostosis","termid":"MONDO:0001411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"coronal synostosis, syndactyly and jejunal atresia","secondary_identifiers":["UMLS:C2931194","GARD:1532","MEDGEN:419740","MESH:C536445"],"synonyms":[{"name":"asymmetrical coronal synostosis, cutaneous syndactyly of the fingers and toes, and jejunal atresia","type":"related"}],"termid":"MONDO:0043083","xrefs":{"Monarch":{"xref_id":"0043083"}}}


id: PBO:0083626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 Ub-ligase (N-recognin); recognizes and ubiquitinates N-end rule pathway substrates in complex with Rad6p; Roq1p-bound form accelerates degradation of misfolded and native ER membrane and cytosolic proteins as part of the stress-induced homeostatically regulated protein degradation (SHRED) pathway; role in ER-associated protein degradation; modifies Cup9p to regulate peptide transport; mutation in human UBR1 causes Johansson-Blizzard Syndrome (JBS)","termid":"PBO:0083626"}


id: PBO:0004058
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"required in h+ but not in h-cells","termid":"PBO:0004058"}


id: PBO:0001510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YEATS family histone acetyltransferase subunit Yaf9","termid":"PBO:0001510"}


id: SO:0002035
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding a lncRNA.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nc_primary_transcript","termid":"SO:0000483"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA_primary_transcript","synonyms":[{"name":"lncRNA primary transcript","type":"exact"}],"termid":"SO:0002035"}


id: GO:0032639
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of TRAIL due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["PMID:9311998","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tumor necrosis factor superfamily cytokine production","termid":"GO:0071706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"TRAIL production","secondary_identifiers":["GO:0045553"],"synonyms":[{"name":"TRAIL biosynthetic process","type":"narrow"}],"termid":"GO:0032639"}


id: SO:0001101
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with nickel ions.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_metal_contact","termid":"SO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_nickel_ion_contact_site","secondary_identifiers":["BS:00142"],"synonyms":[{"name":"Ni_contact_site","type":"exact"},{"name":"polypeptide nickel ion contact site","type":"exact"}],"termid":"SO:0001101"}


id: GO:0008887
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glycerate + ATP = 3-phospho-D-glycerate + ADP + 2 H+.","definition_xrefs":["RHEA:23516","EC:2.7.1.31"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016301","GO:0003674"],"is_obsolete":false,"name":"glycerate kinase activity","secondary_identifiers":["Reactome:R-HSA-6799495","KEGG_REACTION:R01514","MetaCyc:GLY3KIN-RXN"],"synonyms":[{"name":"ATP:(R)-glycerate 3-phosphotransferase activity","type":"related"},{"name":"ATP:D-glycerate 2-phosphotransferase activity","type":"related"},{"name":"D-glycerate 3-kinase activity","type":"related"},{"name":"D-glycerate kinase activity","type":"related"},{"name":"D-glyceric acid kinase activity","type":"related"},{"name":"GK","type":"related"},{"name":"glycerate kinase (phosphorylating)","type":"related"},{"name":"glycerate-3-kinase activity","type":"related"}],"termid":"GO:0008887"}


id: GO:0000110
data:
  {"annotated_genes":["SJAG_02334","SJAG_02556","SJAG_02828"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[71790,76697,77436],"is_not":false,"summary":null,"term":"GO:0000110"}]},"cv_name":"cellular_component","definition":"One of several protein complexes involved in nucleotide-excision repair; possesses DNA damage recognition and endodeoxynuclease activities. In S. cerevisiae, it is composed of Rad1p, Rad10p, and Rad14p; in human the subunits are ERCC4/XPF, ERCC1 and XPA, respectively.","definition_xrefs":["PMID:10915862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-excision repair complex","termid":"GO:0000109"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02334":null,"SJAG_02556":null,"SJAG_02828":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"nucleotide-excision repair factor 1 complex","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"NEF1 complex","type":"exact"},{"name":"XPA-ERCC1-ERCC4 complex","type":"exact"}],"termid":"GO:0000110","terms_by_termid":{"GO:0000110":null}}


id: GO:1904262
data:
  {"annotated_genes":["SJAG_03974","SJAG_01983","SJAG_00457","SJAG_00875","SJAG_03501","SJAG_02389","SJAG_03355","SJAG_01184","SJAG_02231","SJAG_00991","SJAG_03089","SJAG_00824","SJAG_02765","SJAG_04910","SJAG_03072","SJAG_00169","SJAG_00209","SJAG_03799","SJAG_05346","SJAG_03678","SJAG_04249","SJAG_03486","SJAG_01142"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[62862,75309,75416,81709,87472,92803,95595,98384,99083,100979,102540,104677,106702,108838,109245,112748,113572,114175,115731,116087,116651,117655,117848],"is_not":false,"summary":null,"term":"GO:1904262"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of TORC1 signaling.","definition_xrefs":["GO_REF:0000058","PMID:25366275","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of TOR signaling","termid":"GO:0032007"},{"relation_name":"is_a","term_name":"regulation of TORC1 signaling","termid":"GO:1903432"},{"relation_name":"negatively_regulates","term_name":"TORC1 signaling","termid":"GO:0038202"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00169":null,"SJAG_00209":null,"SJAG_00457":null,"SJAG_00824":null,"SJAG_00875":null,"SJAG_00991":null,"SJAG_01142":null,"SJAG_01184":null,"SJAG_01983":null,"SJAG_02231":null,"SJAG_02389":null,"SJAG_02765":null,"SJAG_03072":null,"SJAG_03089":null,"SJAG_03355":null,"SJAG_03486":null,"SJAG_03501":null,"SJAG_03678":null,"SJAG_03799":null,"SJAG_03974":null,"SJAG_04249":null,"SJAG_04910":null,"SJAG_05346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of TORC1 signaling","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"down regulation of TORC1 signal transduction","type":"exact"},{"name":"down regulation of TORC1 signaling","type":"exact"},{"name":"down-regulation of TORC1 signal transduction","type":"exact"},{"name":"down-regulation of TORC1 signaling","type":"exact"},{"name":"downregulation of TORC1 signal transduction","type":"exact"},{"name":"downregulation of TORC1 signaling","type":"exact"},{"name":"inhibition of TORC1 signal transduction","type":"narrow"},{"name":"inhibition of TORC1 signaling","type":"narrow"},{"name":"negative regulation of TORC1 signal transduction","type":"exact"}],"termid":"GO:1904262","terms_by_termid":{"GO:1904262":null}}


id: GO:0106068
data:
  {"annotated_genes":["SJAG_03702","SJAG_01776","SJAG_02545","SJAG_00213","SJAG_04932","SJAG_03436","SJAG_05323","SJAG_01332"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[77041,74261,87491,111068,117472,71981,76203,76157],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030915"}]},"cv_name":"cellular_component","definition":"A protein ligase complex that enables protein sumoylation. Consists of a SUMO-protein transferase and other proteins that may confer substrate specificity of the complex.","definition_xrefs":["PMID:16847351"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00213":null,"SJAG_01332":null,"SJAG_01776":null,"SJAG_02545":null,"SJAG_03436":null,"SJAG_03702":null,"SJAG_04932":null,"SJAG_05323":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"SUMO ligase complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"SUMO transferase complex","type":"exact"},{"name":"SUMO-protein ligase complex","type":"exact"},{"name":"Sumoylation complex","type":"exact"}],"termid":"GO:0106068","terms_by_termid":{"GO:0030915":null}}


id: GO:0016247
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and modulates the activity of a channel. A channel catalyzes energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transporter regulator activity","termid":"GO:0141108"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0098772"],"is_obsolete":false,"name":"channel regulator activity","termid":"GO:0016247"}


id: FYPO:0005961
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which a meiotic spindle forms with microtubules emanating from three or more poles.","definition_xrefs":["PMID:15992541","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic spindle","termid":"FYPO:0000734"},{"relation_name":"is_a","term_name":"multipolar spindle","termid":"FYPO:0005959"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0002399","FYPO:0000120","FYPO:0005447","FYPO:0000054"],"is_obsolete":false,"name":"multipolar meiotic spindle","synonyms":[{"name":"multipolar meiotic spindles","type":"exact"},{"name":"multipolar spindle during meiosis","type":"exact"}],"termid":"FYPO:0005961"}


id: PBO:0038886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylate cyclase activating polypeptide 1","termid":"PBO:0038886"}


id: PBO:0052230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium channel tetramerization domain containing 7","termid":"PBO:0052230"}


id: GO:0061206
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the mesonephros are generated and organized.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney morphogenesis","termid":"GO:0060993"},{"relation_name":"part_of","term_name":"mesonephros development","termid":"GO:0001823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephros morphogenesis","synonyms":[{"name":"Wolffian body morphogenesis","type":"exact"}],"termid":"GO:0061206"}


id: PBO:0079054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Val (CAC) 10-1","termid":"PBO:0079054"}


id: PR:P0CT58
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps2201 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P0CT58"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S22-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22A12.04c","synonyms":[{"name":"Spom972h-rps2201","type":"exact"}],"termid":"PR:P0CT58"}


id: PBO:0029502
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_vegetative_cell_population_after_spore_germination,_elongated_curved_germ_tubes_(obsolete_FYPO:0002213)","termid":"PBO:0029502"}


id: MONDO:0700048
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition characterized by redness, pain, swelling, and tingling in the palms of the hands or the soles of the feet. It may appear as a side effect to chemotherapy agents.","definition_xrefs":["NCIT:C27177"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"skin disorder","termid":"MONDO:0005093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"hand-foot syndrome","secondary_identifiers":["MESH:D060831","UMLS:C0549410","MEDGEN:107497"],"synonyms":[{"name":"palmar-plantar erythrodysthesia","type":"exact"}],"termid":"MONDO:0700048","xrefs":{"Monarch":{"xref_id":"0700048"}}}


id: PR:O14094
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein prune that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01640","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exopolyphosphatase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2F3.11","secondary_identifiers":["UniProtKB:O14094"],"synonyms":[{"name":"ExopolyPase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Metaphosphatase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PRUNE","type":"exact"}],"termid":"PR:O14094"}


id: GO:0070973
data:
  {"annotated_genes":["SJAG_00284","SJAG_03244"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72726,79974],"is_not":false,"summary":null,"term":"GO:0070973"}]},"cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location at an endoplasmic reticulum exit site.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to endoplasmic reticulum","termid":"GO:0070972"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00284":null,"SJAG_03244":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to endoplasmic reticulum exit site","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"protein localisation to endoplasmic reticulum exit site","type":"exact"},{"name":"protein localization to ER exit site","type":"exact"}],"termid":"GO:0070973","terms_by_termid":{"GO:0070973":null}}


id: GO:1904913
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of establishment of the localization of a protein-containing macromolecular complex to a telomere.","definition_xrefs":["GOC:BHF","GOC:BHF_telomere","GOC:rph","GOC:TermGenie","PMID:26586433","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of localization","termid":"GO:0032879"},{"relation_name":"regulates","term_name":"establishment of protein-containing complex localization to telomere","termid":"GO:0097695"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of establishment of protein-containing complex localization to telomere","synonyms":[{"name":"regulation of establishment of macromolecular complex localisation to telomere","type":"exact"},{"name":"regulation of establishment of macromolecular complex localization to telomere","type":"related"}],"termid":"GO:1904913"}


id: PBO:0068526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 125, pseudogene","termid":"PBO:0068526"}


id: MONDO:0020306
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete absent tibia-polydactyly syndrome (obsolete MONDO:0020306)","termid":"MONDO:0020306","xrefs":{"Monarch":{"xref_id":"0020306"}}}


id: GO:0070883
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a precursor microRNA (pre-miRNA) transcript, a stem-loop-containing precursor of microRNA.","definition_xrefs":["PMID:18951094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA binding","termid":"GO:0003723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0003723","GO:0005488"],"is_obsolete":false,"name":"pre-miRNA binding","synonyms":[{"name":"pre-microRNA binding","type":"exact"},{"name":"precursor microRNA binding","type":"exact"}],"termid":"GO:0070883"}


id: GO:1990094
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The positive regulation of the receptor clustering process in which N-methyl-D-aspartate (NMDA) receptors are localized to distinct domains in the cell membrane.","definition_xrefs":["PMID:18442977"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of N-methyl-D-aspartate receptor clustering (obsolete GO:1990094)","synonyms":[{"name":"positive regulation of N-methyl-D-aspartate receptor clustering","type":"exact"},{"name":"positive regulation of NMDA receptor clustering","type":"exact"}],"termid":"GO:1990094"}


id: GO:0001111
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that mediates the transition from the initiation to the elongation phases of transcription by RNA polymerase II, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription factors involved only in the initiation phase and making contacts with elongation specific factors.","definition_xrefs":["PMID:15020047","PMID:22982364","PMID:31628251","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter clearance during DNA-templated transcription","termid":"GO:0001109"},{"relation_name":"part_of","term_name":"transcription by RNA polymerase II","termid":"GO:0006366"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006351"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0006351","GO:0008150"],"is_obsolete":false,"name":"RNA polymerase II promoter clearance","synonyms":[{"name":"promoter clearance from RNA polymerase II promoter","type":"exact"},{"name":"promoter escape from RNA polymerase II promoter","type":"exact"},{"name":"promoter-paused RNA polymerase II release","type":"exact"}],"termid":"GO:0001111"}


id: SO:0001458
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of transcribed_cluster defined by a set of transcribed sequences from the a unique gene.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcribed_cluster","termid":"SO:0001457"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unigene_cluster","synonyms":[{"name":"unigene cluster","type":"related"}],"termid":"SO:0001458"}


id: PBO:0040037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo like helical domain containing 4","termid":"PBO:0040037"}


id: PBO:0043953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crystallin beta-gamma domain containing 1","termid":"PBO:0043953"}


id: MONDO:0020460
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acquired von Willebrand syndrome (AVWS) is a bleeding disorder marked by the same biological anomalies as those seen in hereditary von Willebrand disease (VWD) but which occurs in association with another underlying pathology, generally in elderly patients without any personal or family history of bleeding anomalies.","definition_xrefs":["Orphanet:99147"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemorrhagic disease","termid":"MONDO:0002243"},{"relation_name":"is_a","term_name":"acquired coagulation factor deficiency","termid":"MONDO:0020599"},{"relation_name":"is_a","term_name":"von Willebrand disease (hereditary or acquired)","termid":"MONDO:0024574"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"acquired von willebrand syndrome","secondary_identifiers":["UMLS:C0272362","PMID:28028990","GARD:5573","MedDRA:10069495","MEDGEN:543999","DOID:0111146","SCTID:234451005","NANDO:1200899"],"synonyms":[{"name":"AVWS","type":"exact"},{"name":"Willebrand disease, acquired","type":"related"},{"name":"acquired von Willebrand disease","type":"exact"},{"name":"acquired von Willebrand disease (hereditary or acquired)","type":"exact"},{"name":"acquired von willebrand disease","type":"exact"}],"termid":"MONDO:0020460","xrefs":{"Monarch":{"xref_id":"0020460"}}}


id: GO:0060932
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell of the His-Purkinje system. These cells form the fibers regulate cardiac muscle contraction in the ventricles.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac muscle cell differentiation","termid":"GO:0055007"},{"relation_name":"part_of","term_name":"His-Purkinje system development","termid":"GO:0003164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"His-Purkinje system cell differentiation","termid":"GO:0060932"}


id: MONDO:0014940
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited neurodegenerative disorder","termid":"MONDO:0024237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"neurodegeneration with ataxia, dystonia, and gaze palsy, childhood-onset","secondary_identifiers":["OMIM:617145","DOID:0081364","UMLS:C4310693","MEDGEN:934660"],"synonyms":[{"name":"NADGP","type":"exact"},{"name":"neurodegeneration with ataxia, dystonia, and gaze palsy, childhood-onset","type":"exact"},{"name":"neurodegeneration with ataxia, dystonia, and gaze palsy, childhood-onset; NADGP","type":"exact"}],"termid":"MONDO:0014940","xrefs":{"Monarch":{"xref_id":"0014940"}}}


id: GO:0060710
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell-cell adhesion process in which the cells of the chorion fuse to the cells of the allantois.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell adhesion","termid":"GO:0098609"},{"relation_name":"part_of","term_name":"labyrinthine layer morphogenesis","termid":"GO:0060713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"chorio-allantoic fusion","termid":"GO:0060710"}


id: MONDO:0014686
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"reproductive system disorder","termid":"MONDO:0005039"},{"relation_name":"is_a","term_name":"endocrine system disorder","termid":"MONDO:0005151"},{"relation_name":"is_a","term_name":"primordial dwarfism and slender bone disorder","termid":"MONDO:0800063"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short stature, microcephaly, and endocrine dysfunction","secondary_identifiers":["MEDGEN:895448","GARD:18483","OMIM:616541","UMLS:C4225288"],"synonyms":[{"name":"SSMED","type":"related"},{"name":"short stature, microcephaly, and endocrine dysfunction","type":"exact"}],"termid":"MONDO:0014686","xrefs":{"Monarch":{"xref_id":"0014686"}}}


id: PBO:0072677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rubicon autophagy regulator","termid":"PBO:0072677"}


id: _global:regulates_o_has_output
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"This is the combination of the regulates relation with the has_output relation","definition_xrefs":["GOC:dph","GOC:cjm","GOC:mtg_berkeley_2012_08_27"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulates_o_has_output","secondary_identifiers":["GOREL:0001003"],"termid":"_global:regulates_o_has_output"}


id: GO:0008883
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-4-amino-5-oxopentanoate + NADP+ + tRNA(Glu) = L-glutamyl-tRNA(Glu) + H+ + NADPH.","definition_xrefs":["EC:1.2.1.70","RHEA:12344"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824","GO:0140101","GO:0140098"],"is_obsolete":false,"name":"glutamyl-tRNA reductase activity","secondary_identifiers":["MetaCyc:GLUTRNAREDUCT-RXN","KEGG_REACTION:R04109"],"synonyms":[{"name":"L-glutamate-semialdehyde: NADP+ oxidoreductase (L-glutamyl-tRNAGlu-forming)","type":"related"}],"termid":"GO:0008883"}


id: GO:0019296
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving coenzyme M (2-thioethansulfonate), a coenzyme involved in the utilization of methane by methanogenic prokaryotes.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic acid metabolic process","termid":"GO:0006082"},{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"coenzyme M metabolic process","synonyms":[{"name":"coenzyme M metabolism","type":"exact"}],"termid":"GO:0019296"}


id: SO:0001179
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"U3 snoRNA is a member of the box C/D class of small nucleolar RNAs. The U3 snoRNA secondary structure is characterised by a small 5' domain (with boxes A and A'), and a larger 3' domain (with boxes B, C, C', and D), the two domains being linked by a single-stranded hinge. Boxes B and C form the B/C motif, which appears to be exclusive to U3 snoRNAs, and boxes C' and D form the C'/D motif. The latter is functionally similar to the C/D motifs found in other snoRNAs. The 5' domain and the hinge region act as a pre-rRNA-binding domain. The 3' domain has conserved protein-binding sites. Both the box B/C and box C'/D motifs are sufficient for nuclear retention of U3 snoRNA. The box C'/D motif is also necessary for nucleolar localization, stability and hypermethylation of U3 snoRNA. Both box B/C and C'/D motifs are involved in specific protein interactions and are necessary for the rRNA processing functions of U3 snoRNA.","direct_ancestors":[{"relation_name":"is_a","term_name":"C_D_box_snoRNA","termid":"SO:0000593"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3_snoRNA","secondary_identifiers":["http://en.wikipedia.org/wiki/Small_nucleolar_RNA_U3"],"synonyms":[{"name":"U3 small nucleolar RNA","type":"exact"},{"name":"U3 snoRNA","type":"exact"},{"name":"small nucleolar RNA U3","type":"exact"},{"name":"snoRNA U3","type":"exact"}],"termid":"SO:0001179"}


id: PBO:0061601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUBP iron-sulfur cluster assembly factor 2, cytosolic","termid":"PBO:0061601"}


id: MONDO:0006360
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from epithelial cells of the penis","direct_ancestors":[{"relation_name":"is_a","term_name":"penile cancer","termid":"MONDO:0001325"},{"relation_name":"is_a","term_name":"carcinoma","termid":"MONDO:0004993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"penile carcinoma","secondary_identifiers":["SCTID:372106005","EFO:1000465","DOID:3449","MEDGEN:208877","UMLS:C0853105","NCIT:C9061"],"synonyms":[{"name":"cancer of penis","type":"broad"},{"name":"cancer of the penis","type":"broad"},{"name":"cancer penis","type":"broad"},{"name":"carcinoma of penis","type":"exact"},{"name":"carcinoma of the penis","type":"exact"},{"name":"penile cancer","type":"broad"},{"name":"penile cancer, adult","type":"narrow"},{"name":"penile carcinoma","type":"exact"},{"name":"penis carcinoma","type":"exact"}],"termid":"MONDO:0006360","xrefs":{"Monarch":{"xref_id":"0006360"}}}


id: PBO:0079693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin like 5 pseudogene 1","termid":"PBO:0079693"}


id: PATO:0000124
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000124 relative length (obsolete PATO:0000124)","termid":"PATO:0000124"}


id: PBO:0041733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium/calmodulin dependent protein kinase kinase 1","termid":"PBO:0041733"}


id: MONDO:0032567
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"isolated congenital growth hormone deficiency","termid":"MONDO:0000050"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"isolated growth hormone deficiency, type 4","secondary_identifiers":["OMIM:618157","MEDGEN:1648300","UMLS:C4722273"],"synonyms":[{"name":"Dwarfism of Sindh","type":"related"},{"name":"IGHD4","type":"related"},{"name":"ISOLATED GROWTH HORMONE DEFICIENCY, TYPE IV","type":"related"},{"name":"Isolated Growth Hormone Deficiency, Type Ib","type":"related"},{"name":"Isolated Growth Hormone Deficiency, Type Ib, Formerly","type":"related"},{"name":"growth hormone deficiency, isolated, type IV","type":"exact"}],"termid":"MONDO:0032567","xrefs":{"Monarch":{"xref_id":"0032567"}}}


id: GO:0010035
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus.","definition_xrefs":["GOC:sm"],"gene_count":0,"genotype_count":0,"name":"obsolete response to inorganic substance (obsolete GO:0010035)","termid":"GO:0010035"}


id: MONDO:0700293
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WFS1-related disorder","termid":"MONDO:0700293","xrefs":{"Monarch":{"xref_id":"0700293"}}}


id: GO:0014829
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process, occurring in the vascular tissue, whereby actin/myosin complex activity generates force through ATP hydrolysis resulting in a change in smooth muscle geometry. This process is always coupled to chemo-mechanical energy conversion.","definition_xrefs":["GOC:mtg_muscle","MA:0002718"],"direct_ancestors":[{"relation_name":"is_a","term_name":"smooth muscle contraction","termid":"GO:0006939"},{"relation_name":"is_a","term_name":"vasoconstriction","termid":"GO:0042310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vascular associated smooth muscle contraction","synonyms":[{"name":"vascular smooth muscle contraction","type":"exact"}],"termid":"GO:0014829"}


id: PBO:0067603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 767, pseudogene","termid":"PBO:0067603"}


id: PBO:0078672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon TTT) 5-1","termid":"PBO:0078672"}


id: GO:1901270
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of lipooligosaccharide.","definition_xrefs":["GOC:TermGenie","GOC:yaf","UniPathway:UPA00501"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate derivative catabolic process","termid":"GO:1901136"},{"relation_name":"is_a","term_name":"lipooligosaccharide metabolic process","termid":"GO:1901269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lipooligosaccharide catabolic process","synonyms":[{"name":"lipooligosaccharide breakdown","type":"exact"},{"name":"lipooligosaccharide catabolism","type":"exact"},{"name":"lipooligosaccharide degradation","type":"exact"}],"termid":"GO:1901270"}


id: GO:0047402
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + protein alpha-D-glucosyl-1,2-beta-D-galactosyl-L-hydroxylysine = protein beta-D-galactosyl-L-hydroxylysine + beta-D-glucose. The enzyme specifically hydrolyzes glucose from alpha-D-glucosyl- (1->2)-beta-D-galactosyl disaccharide units that are linked to hydroxylysine residues of collagen and collagen-like proteins.","definition_xrefs":["EC:3.2.1.107","MetaCyc:3.2.1.107-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosidase activity","termid":"GO:0015926"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0140096","GO:0003824","GO:0016787","GO:0003674","GO:0016798"],"is_obsolete":false,"name":"protein-glucosylgalactosylhydroxylysine glucosidase activity","secondary_identifiers":["RHEA:11068"],"synonyms":[{"name":"2-O-alpha-D-glucopyranosyl-5-O-alpha-D-galactopyranosylhydroxy-L-lysine glucohydrolase activity","type":"related"},{"name":"protein-alpha-D-glucosyl-1,2-beta-D-galactosyl-L-hydroxylysine glucohydrolase activity","type":"related"}],"termid":"GO:0047402"}


id: PBO:0011957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase allele types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_deletion","termid":"PBO:0011957"}


id: PBO:0000402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dopey family protein (predicted)","termid":"PBO:0000402"}


id: PR:O13881
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- clr2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13881"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cryptic loci regulator 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1B3.17","synonyms":[{"name":"Spom972h-clr2","type":"exact"}],"termid":"PR:O13881"}


id: PBO:0002779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S18 (predicted)","termid":"PBO:0002779"}


id: MONDO:0020761
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of squamous cell carcinoma in situ. It is a distinct clinicopathological entity and arises from the skin or the mucocutaneous junction. It affects predominantly white males in their 6-8th decades of life. Exposed and non-exposed skin sites are equally affected. UV damage and ingestion of inorganic arsenic may play a role in the development of the disease. On the skin surface, it presents as a single or multiple erythematous, scaly, keratotic patches or plaques. The clinical entity of erythroplasia of Queyrat is regarded as Bowen disease of the penis and it presents as an asymptomatic, red, circumscribed plaque. Morphologically, Bowen disease is characterized by the presence of hyperkeratosis, parakeratosis, dyskeratosis, and acanthosis. The keratotic squamous cells are atypical and display hyperchromatism and abnormal mitotic figures. The dermoepidermal basement membrane is intact. Complete surgical removal of the lesion may be curative.","definition_xrefs":["NCIT:C62571"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin squamous cell carcinoma in situ","termid":"MONDO:0020760"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005093"],"is_obsolete":false,"name":"Bowen disease of the skin","secondary_identifiers":["MEDGEN:14207","NORD:868","UMLS:C0006079","ICDO:8081/2","MESH:D001913"],"synonyms":[{"name":"Bowen Disease","type":"exact"},{"name":"Bowen disease","type":"exact"},{"name":"Bowen disease of the skin","type":"exact"},{"name":"Bowen's disease of the skin","type":"exact"},{"name":"Bowens Disease","type":"exact"},{"name":"Disease, Bowen","type":"exact"},{"name":"Disease, Bowen's","type":"exact"},{"name":"intraepidermal squamous cell carcinoma, Bowen type","type":"exact"}],"termid":"MONDO:0020761","xrefs":{"Monarch":{"xref_id":"0020761"}}}


id: PBO:0078554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 43B","termid":"PBO:0078554"}


id: GO:0051732
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: NTP + 5'-dephospho-RNA = NDP + 5'-phospho-RNA.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete polyribonucleotide kinase activity (obsolete GO:0051732)","synonyms":[{"name":"5'-hydroxyl RNA kinase activity","type":"exact"},{"name":"5'-hydroxyl polyribonucleotide kinase activity","type":"exact"},{"name":"RNA 5'-hydroxyl kinase activity","type":"exact"},{"name":"RNA kinase activity","type":"exact"}],"termid":"GO:0051732"}


id: GO:0140271
data:
  {"annotated_genes":["SJAG_00057","SJAG_03608"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[116820],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098708"},{"annotations":[110221],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140425"}]},"cv_name":"biological_process","definition":"The directed movement of hexose from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["PMID:10735857"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose transmembrane transport","termid":"GO:0008645"},{"relation_name":"is_a","term_name":"carbohydrate import across plasma membrane","termid":"GO:0098704"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00057":null,"SJAG_03608":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085","GO:0051179"],"is_obsolete":false,"name":"hexose import across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140271","terms_by_termid":{"GO:0098708":null,"GO:0140425":null}}


id: GO:0072491
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of toluene, methylbenzene (formula C7H8), or any of its derivatives.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"toluene-containing compound metabolic process","termid":"GO:0072490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"toluene-containing compound catabolic process","synonyms":[{"name":"toluene and derivative catabolic process","type":"exact"},{"name":"toluene-containing compound breakdown","type":"exact"},{"name":"toluene-containing compound catabolism","type":"exact"},{"name":"toluene-containing compound degradation","type":"exact"}],"termid":"GO:0072491"}


id: GO:0015487
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: melibiose(out) + monovalent cation(out) = melibiose(in) + monovalent cation(in).","definition_xrefs":["TC:2.A.2.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate:monoatomic cation symporter activity","termid":"GO:0005402"},{"relation_name":"is_a","term_name":"melibiose transmembrane transporter activity","termid":"GO:0015156"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"melibiose:monoatomic cation symporter activity","synonyms":[{"name":"melibiose permease activity","type":"related"},{"name":"melibiose:cation symporter activity","type":"broad"},{"name":"melibiose:monovalent cation symporter activity","type":"exact"}],"termid":"GO:0015487"}


id: PBO:0026701
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cell_population_growth_on_glutamine_nitrogen_source","termid":"PBO:0026701"}


id: PBO:0085191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ORF with sequence and positional similarity to the MAL64 gene; the MAL64 gene is thought to be a nonfunctional copy of MAL63; encoded within the complex locus MAL3 in some strains of S. cerevisiae, but not in S288C","termid":"PBO:0085191"}


id: MONDO:0008308
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"idiopathic disease","termid":"MONDO:0700007"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"priapism, familial idiopathic","secondary_identifiers":["MEDGEN:356846","MESH:C531791","UMLS:C1867771","OMIM:176620"],"synonyms":[{"name":"familial idiopathic priapism","type":"related"},{"name":"priapism, familial idiopathic","type":"exact"}],"termid":"MONDO:0008308","xrefs":{"Monarch":{"xref_id":"0008308"}}}


id: PBO:0051136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-9","termid":"PBO:0051136"}


id: GO:0010063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that induces or promotes trichoblast fate specification.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of trichoblast fate specification","termid":"GO:0010061"},{"relation_name":"is_a","term_name":"positive regulation of cell fate specification","termid":"GO:0042660"},{"relation_name":"is_a","term_name":"positive regulation of plant epidermal cell differentiation","termid":"GO:1903890"},{"relation_name":"positively_regulates","term_name":"trichoblast fate specification","termid":"GO:0010057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of trichoblast fate specification","synonyms":[{"name":"activation of trichoblast fate","type":"narrow"},{"name":"stimulation of trichoblast fate","type":"narrow"},{"name":"up regulation of trichoblast fate","type":"exact"},{"name":"up-regulation of trichoblast fate","type":"exact"},{"name":"upregulation of trichoblast fate","type":"exact"}],"termid":"GO:0010063"}


id: GO:0007297
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of an ovarian follicle cell that takes place during oogenesis. During egg chamber formation, follicle cells migrate to envelop the germ-line cysts and move in between cysts. At stage 10B, follicle cells migrate centripetally between the nurse cells and the oocyte, enclosing the anterior of the egg. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu","PMID:10822261"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell migration","termid":"GO:0010631"},{"relation_name":"part_of","term_name":"follicle cell of egg chamber development","termid":"GO:0030707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"follicle cell of egg chamber migration","synonyms":[{"name":"follicle cell migration","type":"broad"}],"termid":"GO:0007297"}


id: GO:1904592
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein refolding.","definition_xrefs":["PMID:11360998","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein refolding","termid":"GO:0061083"},{"relation_name":"is_a","term_name":"positive regulation of protein folding","termid":"GO:1903334"},{"relation_name":"positively_regulates","term_name":"protein refolding","termid":"GO:0042026"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006457"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006457"}],"interesting_parent_ids":["GO:0006457","GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein refolding","synonyms":[{"name":"activation of heat shock protein activity","type":"related"},{"name":"activation of protein refolding","type":"narrow"},{"name":"positive regulation of heat shock protein activity","type":"related"},{"name":"up regulation of heat shock protein activity","type":"related"},{"name":"up regulation of protein refolding","type":"exact"},{"name":"up-regulation of heat shock protein activity","type":"related"},{"name":"up-regulation of protein refolding","type":"exact"},{"name":"upregulation of heat shock protein activity","type":"related"},{"name":"upregulation of protein refolding","type":"exact"}],"termid":"GO:1904592"}


id: PBO:0079468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"twinfilin actin binding protein 1","termid":"PBO:0079468"}


id: MONDO:0014783
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Any preimplantation embryonic lethality in which the cause of the disease is a mutation in the TLE6 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"gene_count":0,"genotype_count":0,"name":"obsolete preimplantation embryonic lethality 1 (obsolete MONDO:0014783)","secondary_identifiers":["OMIM:616814"],"synonyms":[{"name":"PREMBL1","type":"exact"},{"name":"Prembl","type":"related"},{"name":"TLE6 preimplantation embryonic lethality","type":"exact"},{"name":"preimplantation embryonic lethality","type":"broad"},{"name":"preimplantation embryonic lethality 1","type":"exact"},{"name":"preimplantation embryonic lethality 1; PREMBL1","type":"exact"},{"name":"preimplantation embryonic lethality caused by mutation in TLE6","type":"exact"},{"name":"preimplantation embryonic lethality type 1","type":"exact"}],"termid":"MONDO:0014783","xrefs":{"Monarch":{"xref_id":"0014783"}}}


id: PBO:0060902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuronal differentiation 1","termid":"PBO:0060902"}


id: PBO:0083277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; deletion mutation enhances replication of Brome mosaic virus in S. cerevisiae, but this is likely due to effects on the overlapping gene ELP4","termid":"PBO:0083277"}


id: MONDO:0005007
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An invasive adenocarcinoma of the colon characterized by the presence of pools of extracellular mucin. Malignant glandular epithelial cells are present in the mucin collections. Mucin constitutes more than 50% of the lesion.","definition_xrefs":["NCIT:C7966"],"direct_ancestors":[{"relation_name":"is_a","term_name":"colon adenocarcinoma","termid":"MONDO:0002271"},{"relation_name":"is_a","term_name":"mucinous adenocarcinoma","termid":"MONDO:0004957"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"colon mucinous adenocarcinoma","secondary_identifiers":["DOID:3029","UMLS:C0279639","EFO:0000364","MEDGEN:76007"],"synonyms":[{"name":"colloid adenocarcinoma of colon","type":"exact"},{"name":"colloid adenocarcinoma of the colon","type":"exact"},{"name":"colloid colon adenocarcinoma","type":"exact"},{"name":"colloidal adenocarcinoma of colon","type":"exact"},{"name":"colloidal adenocarcinoma of the colon","type":"exact"},{"name":"colloidal colon adenocarcinoma","type":"exact"},{"name":"colon colloid adenocarcinoma","type":"exact"},{"name":"colon colloidal adenocarcinoma","type":"exact"},{"name":"colon mucinous adenocarcinoma","type":"exact"},{"name":"colonic colloid adenocarcinoma","type":"exact"},{"name":"colonic colloidal adenocarcinoma","type":"exact"},{"name":"colonic mucinous adenocarcinoma","type":"exact"},{"name":"mucinous adenocarcinoma of colon","type":"exact"},{"name":"mucinous adenocarcinoma of the colon","type":"exact"},{"name":"mucinous colon adenocarcinoma","type":"exact"}],"termid":"MONDO:0005007","xrefs":{"Monarch":{"xref_id":"0005007"}}}


id: GO:0033270
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An axon part that is located adjacent to the nodes of Ranvier and surrounded by lateral loop portions of myelin sheath.","definition_xrefs":["NIF_Subcellular:sao936144858","GOC:mah","GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"main axon","termid":"GO:0044304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"paranode region of axon","secondary_identifiers":["NIF_Subcellular:sao234066064"],"synonyms":[{"name":"paranode","type":"exact"}],"termid":"GO:0033270"}


id: PBO:0056262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAM domain containing 2","termid":"PBO:0056262"}


id: PBO:0090610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphomethylpyrimidine kinase","termid":"PBO:0090610"}


id: PBO:0025463
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycogen storage cardiomyopathy","termid":"PBO:0025463"}


id: PBO:0089165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box/WD repeat protein Pof10","termid":"PBO:0089165"}


id: MONDO:0030634
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"leukoencephalopathy, hereditary diffuse, with spheroids","termid":"MONDO:0030796"},{"relation_name":"is_a","term_name":"AARS1-related leukoencephalopathy","termid":"MONDO:1010132"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"leukoencephalopathy, hereditary diffuse, with spheroids 2","secondary_identifiers":["UMLS:C5562044","MEDGEN:1794254","OMIM:619661"],"synonyms":[{"name":"HDLS2","type":"exact"},{"name":"leukoencephalopathy, hereditary diffuse, with spheroids 2","type":"exact"},{"name":"leukoencephalopathy, hereditary diffuse, with spheroids, swedish IIA","type":"exact"}],"termid":"MONDO:0030634","xrefs":{"Monarch":{"xref_id":"0030634"}}}


id: PBO:0081763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF692 divergent transcript","termid":"PBO:0081763"}


id: MONDO:0014645
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"BENTA disease (B cell Expansion with N F-N:B and T cell Anergy) is a very rare congenital immune deficiency disorder. The main symptoms include spleen enlargement (splenomegalia) and frequent ear, sinus, and lung infections early in life. Some patients can present with molluscum contagiosum or chronic Epstein-Barr virus (EBV) infection. Blood exams show alterations of several immune cells with very high numbers of polyclonal B cell lymphocytos (above 2200/N<l) and few memory B cells. Other findings are low levels of IgM in blood and poor antibody responses to specific vaccines. BENTA disease is caused by mutations in the CARD11 gene. There is no established treatment, but some patients have their spleen removed and there is one case of a hematopoietic stem cell transplantation with good results.","definition_xrefs":["GARD:0013339"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"non-SCID combined immunodeficiency","termid":"MONDO:0018814"},{"relation_name":"is_a","term_name":"inborn error of immunity","termid":"MONDO:0003778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"BENTA disease","secondary_identifiers":["MEDGEN:1641265","OMIM:616452","Orphanet:464336","UMLS:C4551967","GARD:13339"],"synonyms":[{"name":"B-cell expansion with NF-kB and T-cell anergy disease","type":"exact"},{"name":"B-cell expansion with NFKB and T-cell anergy","type":"related"},{"name":"BENTA","type":"related"}],"termid":"MONDO:0014645","xrefs":{"Monarch":{"xref_id":"0014645"}}}


id: PBO:0038667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA synthetase long chain family member 3","termid":"PBO:0038667"}


id: GO:1990445
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a relatively unspecialized cell acquires features of a multiciliated cell, a specialized epithelial cell type that extends anywhere from 150 to 200 motile cilia per cell in order to produce a vigorous fluid flow critical to human health in several organ systems.","definition_xrefs":["PMID:24934224","PMID:22231168"],"gene_count":0,"genotype_count":0,"name":"obsolete Multiciliate cell differentiation (obsolete GO:1990445)","synonyms":[{"name":"Multiciliate cell differentiation","type":"exact"}],"termid":"GO:1990445"}


id: GO:0002583
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of antigen processing and presentation of peptide antigen.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation","termid":"GO:0002577"},{"relation_name":"regulates","term_name":"antigen processing and presentation of peptide antigen","termid":"GO:0048002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of antigen processing and presentation of peptide antigen","synonyms":[{"name":"regulation of peptide antigen processing and presentation","type":"exact"}],"termid":"GO:0002583"}


id: GO:1904380
data:
  {"annotated_genes":["SJAG_01858"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[68172],"is_not":false,"summary":null,"term":"GO:1904380"}]},"cv_name":"biological_process","definition":"Any protein alpha-1,2-demannosylation that takes place in the endoplasmic reticulum quality control compartment (ERQC).","definition_xrefs":["GOC:bf","PMID:24519966","GOC:TermGenie","GOC:PARL","GO_REF:0000062"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein alpha-1,2-demannosylation","termid":"GO:0036508"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01858":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum mannose trimming","references_by_uniquename":{"GO_REF:0000002":null},"secondary_identifiers":["Reactome:R-HSA-901032"],"synonyms":[{"name":"ER mannose trimming","type":"exact"},{"name":"ER protein alpha-1,2-demannosylation","type":"exact"},{"name":"glycoprotein mannose trimming in ER quality control compartment","type":"related"},{"name":"glycoprotein mannose trimming in ER-derived quality control compartment","type":"related"},{"name":"glycoprotein mannose trimming in ERQC","type":"related"},{"name":"glycoprotein mannose trimming in endoplasmic reticulum quality control compartment","type":"related"},{"name":"protein alpha-1,2-demannosylation in ER","type":"exact"},{"name":"protein alpha-1,2-demannosylation in ER quality control compartment","type":"exact"},{"name":"protein alpha-1,2-demannosylation in ER-derived quality control compartment","type":"related"},{"name":"protein alpha-1,2-demannosylation in ERQC","type":"exact"},{"name":"protein alpha-1,2-demannosylation in endoplasmic reticulum","type":"exact"},{"name":"protein alpha-1,2-demannosylation in endoplasmic reticulum quality control compartment","type":"exact"}],"termid":"GO:1904380","terms_by_termid":{"GO:1904380":null}}


id: PR:O13714
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC14C4.07 gene.","definition_xrefs":["UniProtKB:O13714","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C14C4.07 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC14C4.07","synonyms":[{"name":"Spom972h-SPAC14C4.07","type":"exact"}],"termid":"PR:O13714"}


id: MONDO:0005960
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Silicosis is a respiratory disease caused by breathing in (inhaling) silica dust. There are three types of silicosis: Simple chronic silicosis, the most common type of silicosis, results from long-term exposure (usually more than 20years) to low amounts of silica dust. Simple chronic silicosismay causepeople to have difficulty breathing. Accelerated silicosis occurs after 5 to 15 yearsof exposure of higher levels of silica.Swelling of the lungsand other symptoms occur faster in this type of silicosis than in the simple chronic form. Acute silicosis results from short-term exposure (weeks or months) of large amounts of silica.The lungs become very inflamed and can fill with fluid, causing severe shortness of breath and low blood oxygen levels. A cough, weight loss, and fatigue may also be present. Acute silicosis progresses rapidly and can be fatal within months. People who work in jobs where they are exposed to silica dust (mining, quarrying, construction, sand blasting, stone cutting) are at risk of developing this condition.","direct_ancestors":[{"relation_name":"is_a","term_name":"pneumoconiosis","termid":"MONDO:0015926"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"silicosis","secondary_identifiers":["DOID:10325","MESH:D012829","MEDGEN:20758","GARD:7647","NCIT:C3369","ICD9:502","SCTID:805002","UMLS:C0037116","EFO:0007485"],"synonyms":[{"name":"accelerated silicosis","type":"related"},{"name":"acute silicosis","type":"related"},{"name":"chronic silicosis","type":"related"},{"name":"experimental silicosis","type":"related"},{"name":"nodular silicosis","type":"related"},{"name":"pneumoconiosis caused by silica","type":"related"},{"name":"pneumoconiosis due to silica","type":"exact"},{"name":"pneumoconiosis due to silicates","type":"exact"},{"name":"silica pneumoconiosis","type":"exact"},{"name":"silicatosis","type":"related"},{"name":"silicosis","type":"exact"},{"name":"silicotic fibrosis of lung","type":"exact"},{"name":"silicotuberculosis","type":"narrow"}],"termid":"MONDO:0005960","xrefs":{"Monarch":{"xref_id":"0005960"}}}


id: MOD:00051
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to N-acetyl-L-aspartic acid.","definition_xrefs":["PubMed:2395459","ChEBI:21547","PubMed:1560020","RESID:AA0042"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-aspartic acid residue","termid":"MOD:00904"},{"relation_name":"is_a","term_name":"alpha-amino acetylated residue","termid":"MOD:01458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00408"}],"interesting_parent_ids":["MOD:00408"],"is_obsolete":false,"name":"N-acetyl-L-aspartic acid","synonyms":[{"name":"(2S)-2-(acetamido)butanedioic acid","type":"exact"},{"name":"2-(acetylamino)butanedioic acid","type":"exact"},{"name":"2-(acetylazanyl)butanedioic acid","type":"exact"},{"name":"AcAsp","type":"exact"},{"name":"MOD_RES N-acetylaspartate","type":"exact"},{"name":"N-acetyl-L-aspartic acid","type":"exact"},{"name":"N-acetylated L-aspartic acid","type":"exact"},{"name":"acetylaspartic acid","type":"exact"}],"termid":"MOD:00051"}


id: MONDO:0007704
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteoarthritis susceptibility 2","secondary_identifiers":["UMLS:C3887526","OMIM:140600","MEDGEN:854385"],"synonyms":[{"name":"Dipoa","type":"related"},{"name":"Heberden nodes","type":"related"},{"name":"MATN3 osteoarthritis","type":"exact"},{"name":"OADIP","type":"related"},{"name":"OS2","type":"related"},{"name":"hand osteoarthritis","type":"related"},{"name":"osteoarthritis caused by mutation in MATN3","type":"exact"},{"name":"osteoarthritis of distal interphalangeal joints","type":"related"},{"name":"osteoarthritis susceptibility 2","type":"exact"},{"name":"osteoarthritis susceptibility type 2","type":"exact"}],"termid":"MONDO:0007704","xrefs":{"Monarch":{"xref_id":"0007704"}}}


id: PBO:0108711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RasGEF Ste6","termid":"PBO:0108711"}


id: PBO:0080046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 19","termid":"PBO:0080046"}


id: GO:0071202
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A voltage-gated potassium channel complex that contains the peptidase-related protein DPP10 associated with the channel via interaction with the Kv alpha subunit 4.3.","definition_xrefs":["PMID:15911355"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated potassium channel complex","termid":"GO:0008076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"Kv4.3-DPP10 channel complex","secondary_identifiers":["CORUM:598"],"synonyms":[{"name":"Kv4.3-DPPY channel complex","type":"exact"}],"termid":"GO:0071202"}


id: PBO:0078487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ile (anticodon AAT) 7-1","termid":"PBO:0078487"}


id: FYPO:0007218
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 18 of histone H3 in regions containing protein-coding genes occurs to a lower extent than normal.","definition_xrefs":["PMID:31260531","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H3 acetylation during vegetative growth","termid":"FYPO:0002362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002494","FYPO:0005447","FYPO:0001985","FYPO:0002274","FYPO:0001320"],"is_obsolete":false,"name":"decreased histone H3-K18 acetylation at protein coding gene during vegetative growth","synonyms":[{"name":"decreased histone H3-K18 acetylation at protein coding gene during mitotic cell cycle","type":"related"},{"name":"decreased histone H3-K18 acetylation at protein-coding gene during vegetative growth","type":"exact"},{"name":"decreased histone H3K18 acetylation at protein coding gene during vegetative growth","type":"exact"},{"name":"reduced histone H3-K18 acetylation at protein coding gene during vegetative growth","type":"exact"}],"termid":"FYPO:0007218"}


id: MONDO:0010037
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium-potassium-ATPase activity of red cell","secondary_identifiers":["OMIM:270425","UMLS:C1849169","MEDGEN:376532"],"synonyms":[{"name":"sodium pump sites, number of","type":"related"},{"name":"sodium-potassium-ATPase activity of red cell","type":"exact"}],"termid":"MONDO:0010037","xrefs":{"Monarch":{"xref_id":"0010037"}}}


id: GO:0106054
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: uridine34 in tRNA + a [TusE sulfur carrier protein]-S-sulfanylcysteine + ATP + a reduced electron acceptor = a 2-thiouridine34 in tRNA + a [TusE sulfur carrier protein]-L-cysteine + AMP + an oxidized electron acceptor + diphosphate + H+.","definition_xrefs":["PMID:12549933","PMID:16387657"],"gene_count":0,"genotype_count":0,"name":"obsolete tRNA-uracil-34 sulfurtransferase activity (obsolete GO:0106054)","synonyms":[{"name":"tRNA U34 2-thiouridylase","type":"exact"},{"name":"tRNA U34 thiol-transferase activity","type":"exact"},{"name":"tRNA-specific 2-thiouridylase","type":"related"}],"termid":"GO:0106054"}


id: GO:0001957
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Direct ossification that occurs within mesenchyme or an accumulation of relatively unspecialized cells.","definition_xrefs":["ISBN:0878932437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"direct ossification","termid":"GO:0036072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intramembranous ossification","secondary_identifiers":["Wikipedia:Intramembranous_ossification"],"synonyms":[{"name":"dermal ossification","type":"narrow"},{"name":"intramembranous bone ossification","type":"related"}],"termid":"GO:0001957"}


id: RO:0002230
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.","direct_ancestors":[{"relation_name":"is_a","term_name":"has_part","termid":"BFO:0000051"},{"relation_name":"is_a","term_name":"temporally_related_to","termid":"RO:0002222"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ends_with","termid":"RO:0002230"}


id: MONDO:0019326
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"phakomatosis pigmentovascularis","termid":"MONDO:0017318"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005093"],"is_obsolete":false,"name":"phakomatosis cesiomarmorata","secondary_identifiers":["ICD9:759.6","GARD:19024","MEDGEN:825141","Orphanet:79484","SCTID:703286006","UMLS:C3839296"],"synonyms":[{"name":"phakomatosis caesiomarmorata","type":"exact"},{"name":"phakomatosis cesiomarmorata","type":"exact"},{"name":"phakomatosis pigmentovascularis type 5","type":"exact"}],"termid":"MONDO:0019326","xrefs":{"Monarch":{"xref_id":"0019326"}}}


id: GO:0071429
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a ribonucleoprotein complex that contains small nuclear RNA from the nucleus to the cytoplasm.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete snRNA-containing ribonucleoprotein complex export from nucleus (obsolete GO:0071429)","synonyms":[{"name":"snRNA-containing RNP export from nucleus","type":"exact"},{"name":"snRNA-containing ribonucleoprotein complex export from cell nucleus","type":"exact"},{"name":"snRNA-containing ribonucleoprotein complex nucleus export","type":"exact"},{"name":"snRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm","type":"exact"}],"termid":"GO:0071429"}


id: PBO:0066445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"REV3 like, DNA directed polymerase zeta catalytic subunit","termid":"PBO:0066445"}


id: PBO:0068193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 500","termid":"PBO:0068193"}


id: GO:0018299
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The incorporation of iron into a Rieske 4Fe-4S iron-sulfur cluster via bis-L-cysteinyl bis-L-histidino diiron disulfide.","definition_xrefs":["RESID:AA0225"],"gene_count":0,"genotype_count":0,"name":"obsolete iron incorporation into the Rieske iron-sulfur cluster via bis-L-cysteinyl bis-L-histidino diiron disulfide (obsolete GO:0018299)","synonyms":[{"name":"iron incorporation into the Rieske iron-sulphur cluster via bis-L-cysteinyl bis-L-histidino diiron disulphide","type":"exact"}],"termid":"GO:0018299"}


id: PBO:0090477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ornithine N5 monooxygenase","termid":"PBO:0090477"}


id: PBO:0042422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle 27 pseudogene 6","termid":"PBO:0042422"}


id: GO:0072635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of interleukin-31 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:BHF","GOC:mah","PMID:30328794"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"interleukin-31 production","secondary_identifiers":["GO:0072636"],"synonyms":[{"name":"IL-31 production","type":"exact"},{"name":"interleukin-31 secretion","type":"narrow"}],"termid":"GO:0072635"}


id: PBO:0086302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a role in UDP-galactose transport to the Golgi lumen; has similarity to human UDP-galactose transporter UGTrel1, exhibits a genetic interaction with S. cerevisiae ERO1","termid":"PBO:0086302"}


id: MONDO:0011361
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"prostate cancer","termid":"MONDO:0008315"},{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate cancer/brain cancer susceptibility","secondary_identifiers":["OMIM:603688","UMLS:C1863600","MEDGEN:400334"],"synonyms":[{"name":"Capb","type":"related"},{"name":"Pcbc","type":"related"},{"name":"prostate cancer/brain cancer susceptibility","type":"exact"},{"name":"prostate cancer/brain cancer susceptibility, somatic","type":"exact"}],"termid":"MONDO:0011361","xrefs":{"Monarch":{"xref_id":"0011361"}}}


id: GO:0045144
data:
  {"annotated_genes":["SJAG_00678","SJAG_00207","SJAG_00646","SJAG_03989","SJAG_04508"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87454,111266,112818],"is_not":false,"summary":null,"term":"GO:0045144"},{"annotations":[87318,93307],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051456"}]},"cv_name":"biological_process","definition":"The cell cycle process in which sister chromatids are organized and then physically separated and randomly apportioned to two sets during the second division of the meiotic cell cycle.","definition_xrefs":["ISBN:0815316194","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sister chromatid segregation","termid":"GO:0000819"},{"relation_name":"is_a","term_name":"meiotic chromosome segregation","termid":"GO:0045132"},{"relation_name":"is_a","term_name":"chromosome organization involved in meiotic cell cycle","termid":"GO:0070192"},{"relation_name":"part_of","term_name":"meiosis II","termid":"GO:0007135"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00207":null,"SJAG_00646":null,"SJAG_00678":null,"SJAG_03989":null,"SJAG_04508":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0140013"],"is_obsolete":false,"name":"meiotic sister chromatid segregation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"meiosis II, chromosome segregation","type":"exact"}],"termid":"GO:0045144","terms_by_termid":{"GO:0045144":null,"GO:0051456":null}}


id: PBO:0028521
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H3-K9_acetylation","termid":"PBO:0028521"}


id: PBO:0082865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Core Sm protein Sm E; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Smd3p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm E","termid":"PBO:0082865"}


id: GO:0050171
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-glucose + a phenol = UDP + an aryl beta-D-glucoside.","definition_xrefs":["EC:2.4.1.35","MetaCyc:PHENOL-BETA-GLUCOSYLTRANSFERASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"phenol beta-glucosyltransferase activity","synonyms":[{"name":"UDP glucosyltransferase activity","type":"related"},{"name":"UDP-glucose glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:phenol beta-D-glucosyltransferase activity","type":"related"},{"name":"UDPglucose:phenol beta-D-glucosyltransferase activity","type":"related"},{"name":"UDPglucosyltransferase activity","type":"related"},{"name":"phenol b-glucosyltransferase activity","type":"exact"},{"name":"phenol-beta-D-glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucosyltransferase activity","type":"related"}],"termid":"GO:0050171"}


id: FYPO:0003433
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of ornithine carbamoyltransferase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"},{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000661","FYPO:0000654","FYPO:0000707"],"is_obsolete":false,"name":"abnormal ornithine carbamoyltransferase activity","termid":"FYPO:0003433"}


id: PBO:0063177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polybromo 1","termid":"PBO:0063177"}


id: PBO:0060519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NARF antisense RNA 1","termid":"PBO:0060519"}


id: GO:0042702
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regrowth of the endometrium and blood vessels in the uterus following menstruation, resulting from a rise in progesterone levels.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ovulation cycle process","termid":"GO:0022602"},{"relation_name":"is_a","term_name":"developmental growth","termid":"GO:0048589"},{"relation_name":"part_of","term_name":"luteinization","termid":"GO:0001553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"uterine wall growth","termid":"GO:0042702"}


id: PBO:0016524
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Complexed With cdc Five","termid":"PBO:0016524"}


id: PBO:0006184
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-localizes","termid":"PBO:0006184"}


id: GO:0002547
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of the tissue kallikrein-kinin cascade.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of kinin cascade","termid":"GO:0002258"},{"relation_name":"is_a","term_name":"regulation of tissue kallikrein-kinin cascade","termid":"GO:0002382"},{"relation_name":"positively_regulates","term_name":"tissue kallikrein-kinin cascade","termid":"GO:0002255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0051604"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0051604","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of tissue kallikrein-kinin cascade","synonyms":[{"name":"activation of tissue kallikrein-kinin cascade","type":"narrow"},{"name":"positive regulation of glandular kallikrein-kinin cascade","type":"exact"},{"name":"stimulation of tissue kallikrein-kinin cascade","type":"narrow"},{"name":"up regulation of tissue kallikrein-kinin cascade","type":"exact"},{"name":"up-regulation of tissue kallikrein-kinin cascade","type":"exact"},{"name":"upregulation of tissue kallikrein-kinin cascade","type":"exact"}],"termid":"GO:0002547"}


id: PBO:0062901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidoreductase NAD binding domain containing 1","termid":"PBO:0062901"}


id: GO:0005092
data:
  {"annotated_genes":["SJAG_02390","SJAG_02063","SJAG_02831","SJAG_02422","SJAG_03361"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70316,73777],"is_not":false,"summary":null,"term":"GO:0005092"},{"annotations":[77899],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005093"},{"annotations":[77089,110377],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005094"}]},"cv_name":"molecular_function","definition":"Prevents the dissociation of GDP from a GTPase, thereby preventing GTP from binding.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GTPase regulator activity","termid":"GO:0030695"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02063":null,"SJAG_02390":null,"SJAG_02422":null,"SJAG_02831":null,"SJAG_03361":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0003674","GO:0030234","GO:0098772"],"is_obsolete":false,"name":"GDP-dissociation inhibitor activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"GDI","type":"exact"}],"termid":"GO:0005092","terms_by_termid":{"GO:0005092":null,"GO:0005093":null,"GO:0005094":null}}


id: PBO:0089519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase Hca4","termid":"PBO:0089519"}


id: PBO:0028179
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_tRNA_splicing","termid":"PBO:0028179"}


id: PBO:0046506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate rich 2","termid":"PBO:0046506"}


id: GO:2000646
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of receptor catabolic process.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catabolic process","termid":"GO:0009896"},{"relation_name":"is_a","term_name":"positive regulation of macromolecule metabolic process","termid":"GO:0010604"},{"relation_name":"is_a","term_name":"regulation of receptor catabolic process","termid":"GO:2000644"},{"relation_name":"positively_regulates","term_name":"receptor catabolic process","termid":"GO:0032801"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of receptor catabolic process","synonyms":[{"name":"positive regulation of receptor breakdown","type":"exact"},{"name":"positive regulation of receptor catabolism","type":"exact"},{"name":"positive regulation of receptor degradation","type":"exact"}],"termid":"GO:2000646"}


id: FYPO:0006006
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell is inviable and has two nuclei but no septum, and the mitotic cell cycle is arrested in telophase. The post-anaphase microtubule array is present.","definition_xrefs":["PomBase:mah","PMID:12791993"],"direct_ancestors":[{"relation_name":"has_part","term_name":"abnormal cell cycle arrest in mitotic telophase","termid":"FYPO:0000622"},{"relation_name":"is_a","term_name":"abnormal cell cycle arrest in mitotic telophase","termid":"FYPO:0000622"},{"relation_name":"is_a","term_name":"inviable binucleate aseptate cell with mitotic cell cycle arrest before cell separation","termid":"FYPO:0005689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000032","FYPO:0000002","FYPO:0000631","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000004"],"is_obsolete":false,"name":"inviable binucleate aseptate cell with cell cycle arrest in mitotic telophase","synonyms":[{"name":"inviable binucleate aseptate cell with arrest in telophase of mitotic cell cycle","type":"related"},{"name":"inviable binucleate aseptate cell with cell cycle arrest in mitotic telophase during vegetative growth","type":"exact"},{"name":"inviable binucleate aseptate cell with mitotic cell cycle arrest in telophase","type":"exact"},{"name":"lethal; binucleate aseptate cell with cell cycle arrest in mitotic telophase","type":"exact"},{"name":"mitotic cell cycle arrest in telophase with inviable binucleate aseptate cell","type":"exact"}],"termid":"FYPO:0006006"}


id: PR:000027702
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- klp9 gene or a 1:1 ortholog thereof.","definition_xrefs":["PomBase:SPBC15D4.01c","PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin-like motor protein klp9/SPBC15D4.01c","synonyms":[{"name":"klp9","type":"exact"}],"termid":"PR:000027702"}


id: PBO:0005473
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nbs1-Interacting Protein 1","termid":"PBO:0005473"}


id: PBO:0071913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 52","termid":"PBO:0071913"}


id: MONDO:0002766
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A well differentaited, non-metastasizing squamous cell carcinoma arising from the larynx. It is an exophytic, warty, and slow growing tumor affecting predominantly older men. It is associated with tobacco smoking. Symptoms include hoarseness, airway obstruction, weight loss, dysphagia, and throat pain. If left untreated, it may cause extensive local destruction.","definition_xrefs":["NCIT:C8188"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laryngeal squamous cell carcinoma","termid":"MONDO:0005595"},{"relation_name":"is_a","term_name":"verrucous carcinoma","termid":"MONDO:0006006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"larynx verrucous carcinoma","secondary_identifiers":["MEDGEN:76097","SCTID:707427000","DOID:3752","UMLS:C0280328"],"synonyms":[{"name":"laryngeal throat verrucous cancer","type":"exact"},{"name":"laryngeal verrucous carcinoma","type":"exact"},{"name":"larynx verrucous carcinoma","type":"exact"},{"name":"verrucous carcinoma of larynx","type":"exact"},{"name":"verrucous carcinoma of the larynx","type":"exact"}],"termid":"MONDO:0002766","xrefs":{"Monarch":{"xref_id":"0002766"}}}


id: PR:O42958
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pdc2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42958"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA topoisomerase 2-associated protein pat1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19G7.10c","synonyms":[{"name":"Spom972h-pdc2","type":"exact"},{"name":"decapping activator and translational repressor pat1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"topoisomerase II-associated protein pat1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42958"}


id: PBO:0077160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TLE family member 1 pseudogene 1","termid":"PBO:0077160"}


id: GO:0003354
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of cilium movement, the directed, self-propelled movement of a cilium.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cilium movement","termid":"GO:0003352"},{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"negatively_regulates","term_name":"cilium movement","termid":"GO:0003341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cilium movement","secondary_identifiers":["GO:1900173"],"synonyms":[{"name":"negative regulation of flagellum movement","type":"related"},{"name":"negative regulation of microtubule-based flagellum movement","type":"exact"}],"termid":"GO:0003354"}


id: MONDO:0004563
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polycythemia that is not pathologic.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polycythemia","termid":"MONDO:0005571"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"physiological polycythemia","secondary_identifiers":["DOID:8431","MEDGEN:163545","UMLS:C0856817","NCIT:C27311"],"termid":"MONDO:0004563","xrefs":{"Monarch":{"xref_id":"0004563"}}}


id: GO:1904227
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of glycogen synthase activity, transferring glucose-1-phosphate.","definition_xrefs":["GOC:BHF","GOC:rl","GO_REF:0000059","GOC:TermGenie","PMID:17569761"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of glycogen synthase activity, transferring glucose-1-phosphate (obsolete GO:1904227)","synonyms":[{"name":"down regulation of glycogen synthase activity, transferring glucose-1-phosphate","type":"exact"},{"name":"down-regulation of glycogen synthase activity, transferring glucose-1-phosphate","type":"exact"},{"name":"downregulation of glycogen synthase activity, transferring glucose-1-phosphate","type":"exact"},{"name":"inhibition of glycogen synthase activity, transferring glucose-1-phosphate","type":"narrow"}],"termid":"GO:1904227"}


id: PBO:0065144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prolactin receptor","termid":"PBO:0065144"}


id: MONDO:0010702
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare neurodevelopmental disorder in the ciliopathy group that is lethal in males and characterized by variable anomalies including external malformations (craniofacial and digital), and possible involvement of the central nervous system (CNS) and of viscera (kidneys, pancreas and ovaries) in females.","definition_xrefs":["Orphanet:2750"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"orofaciodigital syndrome","termid":"MONDO:0015375"},{"relation_name":"excluded_subClassOf","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"},{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"excluded_subClassOf","term_name":"hereditary sebaceous gland anomaly","termid":"MONDO:0021029"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"ciliopathy","termid":"MONDO:0005308"},{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"orofaciodigital syndrome I","secondary_identifiers":["MEDGEN:307142","SCTID:1779005","GARD:4121","OMIM:311200","SCTID:763833006","DOID:0060316","UMLS:C1510460","NCIT:C75481","MESH:C537134"],"synonyms":[{"name":"OFD syndrome 1","type":"exact"},{"name":"OFD1","type":"exact"},{"name":"OFDI","type":"exact"},{"name":"OFDS 1","type":"exact"},{"name":"OFDSI","type":"exact"},{"name":"Papillon-Leage and Psaume syndrome","type":"exact"},{"name":"Papillon-Leage-Psaume syndrome","type":"exact"},{"name":"Papillon-Léage-Psaume syndrome","type":"exact"},{"name":"Papillon-league-Psaume syndrome (formerly)","type":"exact"},{"name":"oral facial digital syndrome 1","type":"exact"},{"name":"oral facial digital syndrome type 1","type":"exact"},{"name":"oral-facial-digital syndrome 1","type":"exact"},{"name":"oral-facial-digital syndrome type 1","type":"exact"},{"name":"oral-facial-digital syndrome, type 1","type":"exact"},{"name":"orofaciodigital syndrome 1","type":"exact"},{"name":"orofaciodigital syndrome I","type":"exact"},{"name":"orofaciodigital syndrome i, X-linked dominant","type":"exact"},{"name":"orofaciodigital syndrome type 1","type":"exact"},{"name":"orofaciodigital syndrome type I","type":"exact"}],"termid":"MONDO:0010702","xrefs":{"Monarch":{"xref_id":"0010702"}}}


id: PBO:0053284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIM domain and actin binding 1","termid":"PBO:0053284"}


id: FYPO:0003083
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which replication fork arrest at the mating-type locus is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal replication fork arrest","termid":"FYPO:0003088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal replication fork arrest at mating-type locus","synonyms":[{"name":"abnormal replication fork arrest at mating-type locus during mitotic cell cycle","type":"related"},{"name":"abnormal replication fork arrest at mating-type locus during vegetative growth","type":"exact"}],"termid":"FYPO:0003083"}


id: PBO:0000069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S. pombe specific GPI anchored protein family","termid":"PBO:0000069"}


id: PBO:0031392
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-growth_auxotrophic_for_cysteine","termid":"PBO:0031392"}


id: PBO:0039809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARF4 antisense RNA 1","termid":"PBO:0039809"}


id: GO:0075171
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its MAP kinase-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of MAP kinase-mediated signal transduction in response to host (obsolete GO:0075171)","synonyms":[{"name":"regulation of symbiont MAP kinase-mediated signal transduction in response to host","type":"exact"}],"termid":"GO:0075171"}


id: GO:0019170
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-lactaldehyde + NAD+ = methylglyoxal + NADH + H+.","definition_xrefs":["EC:1.1.1.78"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"methylglyoxal reductase (NADH) activity","secondary_identifiers":["RHEA:24528","MetaCyc:D-LACTALDEHYDE-DEHYDROGENASE-RXN"],"synonyms":[{"name":"(R)-lactaldehyde:NAD+ oxidoreductase activity","type":"related"},{"name":"D-lactaldehyde dehydrogenase activity","type":"exact"},{"name":"methylglyoxal reductase (NADH-dependent) activity","type":"exact"},{"name":"methylglyoxal reductase activity","type":"exact"}],"termid":"GO:0019170"}


id: MONDO:0019181
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Nonspecific X-linked intellectual deficiencies (MRX) belong to the family of sex-linked intellectual deficiencies (XLMR). In contrast to syndromic or specific X-linked intellectual deficiencies (MRXS), which also present with associated physical, neurological and/or psychiatric manifestations, intellectual deficiency is the only symptom of MRX.","definition_xrefs":["Orphanet:777"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic intellectual disability","termid":"MONDO:0000509"},{"relation_name":"is_a","term_name":"X-linked intellectual disability","termid":"MONDO:0100284"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-syndromic X-linked intellectual disability","secondary_identifiers":["DOID:0050776","MESH:C564490","UMLS:C3501611","MEDGEN:502019","OMIMPS:309530","GARD:18640"],"synonyms":[{"name":"X-linked non-specific intellectual disability","type":"exact"},{"name":"X-linked non-syndromic intellectual disability","type":"exact"},{"name":"intellectual disability, X-linked, nonsyndromic","type":"exact"},{"name":"intellectual disability, nonsyndromic, X-linked","type":"exact"},{"name":"isolated X-linked intellectual disability","type":"related"},{"name":"mental retardation, X-linked, nonsyndromic","type":"exact"},{"name":"mental retardation, nonsyndromic, X-linked","type":"exact"},{"name":"non-specific X-linked intellectual disability","type":"exact"},{"name":"non-specific X-linked mental retardation","type":"exact"},{"name":"non-syndromic X-linked intellectual disability","type":"exact"},{"name":"non-syndromic intellectual disability, X-linked","type":"exact"},{"name":"nonsyndromic X-linked intellectual disability","type":"exact"}],"termid":"MONDO:0019181","xrefs":{"Monarch":{"xref_id":"0019181"}}}


id: PBO:0057634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1224","termid":"PBO:0057634"}


id: GO:0060226
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the process in which a cell becomes committed to a retinal cone cell fate. Retinal cone cell fate commitment is the process in which the developmental fate of a cell becomes restricted such that it will develop into a retinal cone cell.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell fate commitment","termid":"GO:0010454"},{"relation_name":"is_a","term_name":"negative regulation of photoreceptor cell differentiation","termid":"GO:0046533"},{"relation_name":"is_a","term_name":"regulation of retinal cone cell fate commitment","termid":"GO:0060222"},{"relation_name":"negatively_regulates","term_name":"retinal cone cell fate commitment","termid":"GO:0046551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of retinal cone cell fate commitment","termid":"GO:0060226"}


id: MONDO:0044984
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease or disorder that involves the nasolacrimal duct.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lacrimal apparatus disorder","termid":"MONDO:0001854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"nasolacrimal duct disorder","secondary_identifiers":["SCTID:95767006","MEDGEN:636806","UMLS:C0521744"],"synonyms":[{"name":"disease of nasolacrimal duct","type":"exact"},{"name":"disease or disorder of nasolacrimal duct","type":"exact"},{"name":"disorder of nasolacrimal duct","type":"exact"},{"name":"nasolacrimal duct disease","type":"exact"},{"name":"nasolacrimal duct disease or disorder","type":"exact"}],"termid":"MONDO:0044984","xrefs":{"Monarch":{"xref_id":"0044984"}}}


id: PR:O42939
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A SUMO-activating enzyme subunit 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10953:SF5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-activating enzyme E1-like (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16H5.03c","secondary_identifiers":["UniProtKB:O42939"],"synonyms":[{"name":"SPBC16H5.03c","type":"related"},{"name":"Spom972h-UBA2","type":"exact"},{"name":"pmt3-activating enzyme subunit 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42939"}


id: GO:0033997
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: [(2->1)-beta-D-fructosyl](n) = [(2->1)-beta-D-fructosyl](n-1) + alpha-D-fructofuranose-beta-D-fructofuranose 1,2':1,2'-dianhydride. This reaction is the production of alpha-D-fructofuranose beta-D-fructofuranose 1,2':2,1'-dianhydride (DFA I) by successively eliminating the diminishing (2->1)-beta-D-fructan (inulin) chain from the terminal D-fructosyl-D-fructosyl disaccharide.","definition_xrefs":["EC:4.2.2.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"inulin fructotransferase (DFA-I-forming) activity","secondary_identifiers":["MetaCyc:4.2.2.17-RXN"],"synonyms":[{"name":"2,1-beta-D-fructan lyase (alpha-D-fructofuranose-beta-D-fructofuranose-1,2':2,1'-dianhydride-forming) activity","type":"related"},{"name":"inulin D-fructosyl-D-fructosyltransferase (1,2':1',2-dianhydride-forming) activity","type":"related"},{"name":"inulin D-fructosyl-D-fructosyltransferase (forming alpha-D-fructofuranose beta-D-fructofuranose 1,2':1',2-dianhydride) activity","type":"related"},{"name":"inulin fructotransferase (DFA-I-producing) activity","type":"related"},{"name":"inulin fructotransferase (depolymerizing, difructofuranose-1,2':2',1-dianhydride-forming) activity","type":"related"}],"termid":"GO:0033997"}


id: PBO:0065152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein arginine methyltransferase 5","termid":"PBO:0065152"}


id: GO:0045047
data:
  {"annotated_genes":["SJAG_03315","SJAG_01496","SJAG_02456","SJAG_03684","SJAG_04129","SJAG_02867","SJAG_03411","SJAG_01840","SJAG_03737","SJAG_02330","SJAG_01750","SJAG_01558","SJAG_00603","SJAG_02588","SJAG_01282","SJAG_00175","SJAG_00959","SJAG_01782","SJAG_02354","SJAG_00064","SJAG_03955","SJAG_03396","SJAG_00360","SJAG_01759","SJAG_02208"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70803,71373,87098,97868,97918,112149],"is_not":false,"summary":null,"term":"GO:0045047"},{"annotations":[108909,95229,81292,109198],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006620"},{"annotations":[97555,96838,74925,82032,107872],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031204"},{"annotations":[67580,93757,70548,109199,74729],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006614"},{"annotations":[113968,91107,114731],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006617"},{"annotations":[102111,77325,75386,97557,107874,74977],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006616"}]},"cv_name":"biological_process","definition":"The process of directing proteins towards the endoplasmic reticulum (ER) using signals contained within the protein. One common mechanism uses a 16- to 30-residue signal sequence, typically located at the N-terminus of the protein and containing positively charged amino acids followed by a continuous stretch of hydrophobic residues, which directs the ribosome to the ER membrane and initiates transport of the growing polypeptide across the ER membrane.","definition_xrefs":["ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein targeting","termid":"GO:0006605"},{"relation_name":"is_a","term_name":"establishment of protein localization to endoplasmic reticulum","termid":"GO:0072599"}],"gene_count":25,"genes_by_uniquename":{"SJAG_00064":null,"SJAG_00175":null,"SJAG_00360":null,"SJAG_00603":null,"SJAG_00959":null,"SJAG_01282":null,"SJAG_01496":null,"SJAG_01558":null,"SJAG_01750":null,"SJAG_01759":null,"SJAG_01782":null,"SJAG_01840":null,"SJAG_02208":null,"SJAG_02330":null,"SJAG_02354":null,"SJAG_02456":null,"SJAG_02588":null,"SJAG_02867":null,"SJAG_03315":null,"SJAG_03396":null,"SJAG_03411":null,"SJAG_03684":null,"SJAG_03737":null,"SJAG_03955":null,"SJAG_04129":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006605"}],"interesting_parent_ids":["GO:0006605","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein targeting to ER","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"protein targeting to endoplasmic reticulum","type":"exact"},{"name":"protein-ER targeting","type":"exact"},{"name":"protein-endoplasmic reticulum targeting","type":"exact"}],"termid":"GO:0045047","terms_by_termid":{"GO:0006614":null,"GO:0006616":null,"GO:0006617":null,"GO:0006620":null,"GO:0031204":null,"GO:0045047":null}}


id: MONDO:0100296
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Olmsted syndrome in which the cause of the disease is a variation in the TRPV3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Olmsted syndrome","termid":"MONDO:0031421"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"Olmsted syndrome 1","secondary_identifiers":["OMIM:614594","UMLS:C5542829","DOID:0112013","GARD:15818","MEDGEN:1778121"],"synonyms":[{"name":"Olmsted syndrome","type":"broad"},{"name":"palmoplantar keratoderma, mutilating, with periorificial keratotic plaques 1","type":"exact"}],"termid":"MONDO:0100296","xrefs":{"Monarch":{"xref_id":"0100296"}}}


id: GO:0090434
data:
  {"annotated_genes":["SJAG_03471"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105143],"is_not":false,"summary":null,"term":"GO:0090434"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + oleic acid + CoA = AMP + diphosphate + oleoyl-CoA.","definition_xrefs":["GOC:al","PMID:18071249"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty acid-CoA ligase activity","termid":"GO:0004467"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03471":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"oleoyl-CoA ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"oleoyl-CoA synthetase activity","type":"exact"}],"termid":"GO:0090434","terms_by_termid":{"GO:0090434":null}}


id: FYPO:0006764
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the meiotic cell cycle DNA replication checkpoint is activated at a normal (i.e. indistinguishable from wild type) frequency, under conditions that cause checkpoint activation in wild-type cells. The meiotic DNA replication checkpoint delays the meiotic nuclear division until pre-meiotic DNA replication is complete.","definition_xrefs":["PMID:10521402","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic cell cycle checkpoint phenotype","termid":"FYPO:0005511"},{"relation_name":"is_a","term_name":"normal cell cycle process","termid":"FYPO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000298","FYPO:0000257","FYPO:0000631"],"is_obsolete":false,"name":"normal activation of meiotic cell cycle DNA replication checkpoint","synonyms":[{"name":"normal activation of meiotic DNA replication checkpoint","type":"exact"},{"name":"normal activation of meiotic G2/MI DNA replication checkpoint","type":"exact"},{"name":"normal meiotic DNA replication checkpoint activation","type":"exact"}],"termid":"FYPO:0006764"}


id: PBO:0002903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RFC related checkpoint protein Rad17","termid":"PBO:0002903"}


id: PBO:0028216
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-fragmented_nucleus_during_cellular_response_to_salt_stress","termid":"PBO:0028216"}


id: GO:0086029
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that mediates the transfer of information from a Purkinje myocyte to a ventricular cardiac muscle cell.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling involved in cardiac conduction","termid":"GO:0086019"},{"relation_name":"is_a","term_name":"Purkinje myocyte to ventricular cardiac muscle cell communication","termid":"GO:0086068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"Purkinje myocyte to ventricular cardiac muscle cell signaling","synonyms":[{"name":"Purkinje myocyte to ventricular cardiac muscle cell signalling","type":"exact"}],"termid":"GO:0086029"}


id: GO:0015156
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of melibiose from one side of a membrane to the other. Melibiose is the disaccharide 6-O-alpha-D-galactopyranosyl-D-glucose and occurs as a constituent of the trisaccharide raffinose or in the exudates and nectaries of a number of plants.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disaccharide transmembrane transporter activity","termid":"GO:0015154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"melibiose transmembrane transporter activity","termid":"GO:0015156"}


id: GO:0016724
data:
  {"annotated_genes":["SJAG_04677","SJAG_03862"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[59209,79494],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004322"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered and oxygen acts as an electron acceptor.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on metal ions","termid":"GO:0016722"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03862":null,"SJAG_04677":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on metal ions, oxygen as acceptor","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null},"secondary_identifiers":["EC:1.16.3.-"],"synonyms":[{"name":"oxidoreductase activity, oxidizing metal ions, oxygen as acceptor","type":"related"}],"termid":"GO:0016724","terms_by_termid":{"GO:0004322":null}}


id: MONDO:0012450
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spinocerebellar ataxia type 28 (SCA28) is a very rare subtype of type I autosomal dominant cerebellar ataxia (ADCA type I). It is characterized by juvenile onset, slowly progressive cerebellar ataxia due to Purkinje cell degeneration.","definition_xrefs":["Orphanet:101109"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial oxidative phosphorylation disorder","termid":"MONDO:0016387"},{"relation_name":"is_a","term_name":"autosomal dominant cerebellar ataxia type I","termid":"MONDO:0019792"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005066","MONDO:0002039","MONDO:0004069","MONDO:0005559"],"is_obsolete":false,"name":"spinocerebellar ataxia type 28","secondary_identifiers":["MEDGEN:339941","icd11.foundation:2020736035","MESH:C537205","GARD:9951","UMLS:C1853249","SCTID:715824008","OMIM:610246","DOID:0050977"],"synonyms":[{"name":"SCA28","type":"exact"},{"name":"spinocerebellar ataxia 28","type":"related"},{"name":"spinocerebellar ataxia type 28","type":"exact"}],"termid":"MONDO:0012450","xrefs":{"Monarch":{"xref_id":"0012450"}}}


id: FYPO:0004561
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of BE49385A (a GPI synthesis inhibitor, also called YW3548) than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0002682","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"resistance to BE49385A","synonyms":[{"name":"resistance to BE49385A during mitotic cell cycle","type":"related"},{"name":"resistance to BE49385A during vegetative growth","type":"exact"},{"name":"resistance to YW3548","type":"exact"},{"name":"resistant to BE49385A","type":"exact"}],"termid":"FYPO:0004561"}


id: PBO:0004256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GINS complex subunit Sld5","termid":"PBO:0004256"}


id: PBO:0074019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 13","termid":"PBO:0074019"}


id: GO:0046565
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-dehydroshikimate = 3,4-dihydroxybenzoate + H2O. 3,4-dihydroxybenzoate is also known as protocatechuate.","definition_xrefs":["EC:4.2.1.118","MetaCyc:DHSHIKIMATE-DEHYDRO-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"3-dehydroshikimate dehydratase activity","secondary_identifiers":["RHEA:24848"],"termid":"GO:0046565"}


id: PBO:0063999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 33","termid":"PBO:0063999"}


id: MONDO:0100257
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any peroxisomal disease in which the cause of the disease is a defect in a single enyme or protein.","direct_ancestors":[{"relation_name":"is_a","term_name":"peroxisomal disease","termid":"MONDO:0019053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0019053"}],"interesting_parent_ids":["MONDO:0019053","MONDO:0005066"],"is_obsolete":false,"name":"peroxisomal single enzyme/protein defect","synonyms":[{"name":"peroxisomal single enzyme/protein defect","type":"exact"}],"termid":"MONDO:0100257","xrefs":{"Monarch":{"xref_id":"0100257"}}}


id: PBO:0002199
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.7.14","termid":"PBO:0002199"}


id: GO:0019936
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ceb"],"gene_count":0,"genotype_count":0,"name":"obsolete inositol phospholipid-mediated signaling (obsolete GO:0019936)","synonyms":[{"name":"inositol phospholipid-mediated signaling","type":"exact"},{"name":"inositol phospholipid-mediated signalling","type":"exact"}],"termid":"GO:0019936"}


id: PATO:0001971
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A branched quality inhering in a bearer by virtue of the bearer's having secondary branches freely branching toward the margin.","definition_xrefs":["Hickey:1988"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branched","termid":"PATO:0000402"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cladodromous","termid":"PATO:0001971"}


id: MONDO:0010130
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Dihydropyrimidine dehydrogenase (DPD) deficiency isaconditionin which the body cannot break down the nucleotides thymine and uracil. DPD deficiency can have a wide range of severity; some individuals may have various neurological problems, while others have no signsand symptoms. Signs and symptoms in severely affected individuals begin in infancy and may include seizures, intellectual disability, microcephaly, increased muscle tone (hypertonia), delayed motor skills, and autistic behavior. All individuals with the condition, regardless of the presence or severity of symptoms, are at risk for severe, toxic reactions to drugs called fluoropyrimidines which are used to treat cancer. Individuals with no symptoms may be diagnosed only by laboratory testing or after exposure to fluoropyrimidines. DPD deficiency is caused by mutations in the DPYD gene and is inherited in an autosomal recessive manner.","direct_ancestors":[{"relation_name":"is_a","term_name":"osteochondrosis","termid":"MONDO:0018381"},{"relation_name":"is_a","term_name":"osteonecrosis of genetic origin","termid":"MONDO:0018383"},{"relation_name":"is_a","term_name":"inborn disorder of pyrimidine metabolism","termid":"MONDO:0019238"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019254"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0019254"],"is_obsolete":false,"name":"dihydropyrimidine dehydrogenase deficiency","secondary_identifiers":["icd11.foundation:701689290","ICD9:277.2","NCIT:C84672","MedDRA:10052622","UMLS:C1959620","MESH:D054067","SCTID:77365006","OMIM:274270","MEDGEN:409522","Orphanet:1675","DOID:14218","GARD:19"],"synonyms":[{"name":"DPD deficiency","type":"related"},{"name":"DYPD deficiency","type":"exact"},{"name":"Dpyd deficiency","type":"related"},{"name":"dihydropyrimidine dehydrogenase deficiency","type":"exact"},{"name":"dihydrouracil dehydrogenase deficiency","type":"exact"},{"name":"familial pyrimidinaemia","type":"exact"},{"name":"familial pyrimidinemia","type":"exact"},{"name":"hereditary thymine-uraciluria","type":"related"},{"name":"pyrimidinemia, familial","type":"related"},{"name":"thymine-Uraciluria, hereditary","type":"related"},{"name":"thymine-uracilurea","type":"exact"}],"termid":"MONDO:0010130","xrefs":{"Monarch":{"xref_id":"0010130"}}}


id: RO:0002233
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.","direct_ancestors":[{"relation_name":"is_a","term_name":"has_participant","termid":"RO:0000057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_input","termid":"RO:0002233"}


id: PBO:0060581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NBPF member 18, pseudogene","termid":"PBO:0060581"}


id: PBO:0014274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6,7-dimethyl-8-ribityllumazine synthase","termid":"PBO:0014274"}


id: PBO:0083796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein of unknown function; with orthologs in Ashbya gossypii and Candida albicans; similar to human ATXN10, mutations in which cause spinocerebellar ataxia type 10; codon usage corresponds to that observed for yeast genes expressed at low levels; relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0083796"}


id: GO:1904355
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of telomere capping.","definition_xrefs":["GO_REF:0000058","GOC:nc","GOC:BHF_telomere","GOC:TermGenie","GOC:BHF","PMID:23959892"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of telomere maintenance","termid":"GO:0032206"},{"relation_name":"is_a","term_name":"regulation of telomere capping","termid":"GO:1904353"},{"relation_name":"positively_regulates","term_name":"telomere capping","termid":"GO:0016233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0032200"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0032200"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0032200","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"positive regulation of telomere capping","synonyms":[{"name":"activation of telomere capping","type":"narrow"},{"name":"activation of telomere end protection","type":"narrow"},{"name":"positive regulation of telomere end protection","type":"exact"},{"name":"up regulation of telomere capping","type":"exact"},{"name":"up regulation of telomere end protection","type":"exact"},{"name":"up-regulation of telomere capping","type":"exact"},{"name":"up-regulation of telomere end protection","type":"exact"},{"name":"upregulation of telomere capping","type":"exact"},{"name":"upregulation of telomere end protection","type":"exact"}],"termid":"GO:1904355"}


id: MONDO:0014821
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with decreased bone density (obsolete MONDO:0019704)","termid":"MONDO:0019704"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complex lethal osteochondrodysplasia","secondary_identifiers":["MEDGEN:900688","UMLS:C4225162","Orphanet:457378","OMIM:616897","GARD:17807"],"synonyms":[{"name":"Complex lethal osteochondrodysplasia, Symoens-Barnes-Gistelinck type","type":"exact"},{"name":"OCLSBG","type":"related"},{"name":"osteochondrodysplasia, COMPLEX lethal, Symoens-Barnes-Gistelinck type","type":"related"},{"name":"osteochondrodysplasia, Complex lethal, Symoens-Barnes-Gistelinck type","type":"related"}],"termid":"MONDO:0014821","xrefs":{"Monarch":{"xref_id":"0014821"}}}


id: FYPO:0006784
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which vacuoles tubule-shaped.","definition_xrefs":["PomBase:mah","PMID:30451685"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vacuolar morphology during vegetative growth","termid":"FYPO:0000368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"tubular vacuole morphology during vegetative growth","synonyms":[{"name":"tubular vacuole morphology during mitotic cell cycle","type":"related"},{"name":"tubular-shaped vacuoles during vegetative growth","type":"exact"}],"termid":"FYPO:0006784"}


id: MONDO:0000665
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Apraxia is a neurological disorder characterized by the inability to perform tasks or movements, despite having the desire and physical ability to perform them. It is caused by damage to the brain, especially the parietal lobe, and can arise from many diseases, tumors, a stroke, or traumatic brain injury. In some cases it is present from birth. There are several types of apraxia, which may occur alone or together. These include: Buccofacial or orofacial apraxia is the inability to carry out facial movements on demand. This may include licking the lips, sticking out the tongue, whistling, coughing, or winking. Ideational apraxia is the inability to carryout learned, complex tasks with multiple, sequential movements. This may include dressing, eating, and bathing. Ideomotor apraxia is the inability to perform a learned task (such as using a tool) or communicate using gestures (like waving good-bye). Limb-kinetic apraxia is the inability to make fine, precise movements with an arm or leg. This may include buttoning a shirt or tying a shoe. Verbal apraxia is difficulty coordinating mouth and speech movements. Verbal apraxia may be acquired or present from birth. Constructional apraxia is the inability to copy, draw, or construct simple figures. Oculomotor apraxia is difficulty moving the eyes on command. Treatment of apraxia may include physical, speech, or occupational therapy. If apraxia occurs as a symptom of another disorder, treatment should be directed to the underlying condition.","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"agnosia","termid":"MONDO:0005638"},{"relation_name":"is_a","term_name":"perceptual disorders","termid":"MONDO:0024417"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apraxia","secondary_identifiers":["NCIT:C180557","icd11.foundation:986651951","UMLS:C0003635","DOID:0060135","ICD10CM:R48.2","MEDGEN:8166","MESH:D001072"],"synonyms":[{"name":"Apraxias","type":"exact"},{"name":"dyspraxia","type":"exact"}],"termid":"MONDO:0000665","xrefs":{"Monarch":{"xref_id":"0000665"}}}


id: GO:0045018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of substances from the vacuole to the trans-Golgi network; this occurs in yeast via the prevacuolar/endosomal compartment.","definition_xrefs":["PMID:9700156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuolar transport","termid":"GO:0007034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"retrograde transport, vacuole to Golgi","synonyms":[{"name":"retrograde transport from the vacuole","type":"exact"}],"termid":"GO:0045018"}


id: PBO:0074139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 35 member A4","termid":"PBO:0074139"}


id: PBO:0005585
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orthologous to S. cerevisiae YBR194W","termid":"PBO:0005585"}


id: GO:0003399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a cytoneme are shaped. A cytoneme is a long, thin and polarized actin-based cytoplasmic extension that projects from a cell.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection morphogenesis","termid":"GO:0120039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytoneme morphogenesis","termid":"GO:0003399"}


id: MONDO:1012805
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cerebellar ataxia that occurs in dogs due to a mutation in the SCN8A gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebellar ataxia, dog","termid":"MONDO:1012957"},{"relation_name":"is_a","term_name":"hereditary cerebellar ataxia, non-human animal","termid":"MONDO:1012960"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spinocerebellar ataxia, SCN8A-related, dog","secondary_identifiers":["OMIA:002194-9615"],"synonyms":[{"name":"ataxia, spinocerebellar, SCN8A-related, dog","type":"exact"}],"termid":"MONDO:1012805","xrefs":{"Monarch":{"xref_id":"1012805"}}}


id: PBO:0079173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis specific protein Y-linked 2","termid":"PBO:0079173"}


id: GO:0061560
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to a cranial ganglion. This process pertains to the initial formation of a structure from unspecified parts.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ganglion formation","termid":"GO:0061554"},{"relation_name":"part_of","term_name":"cranial ganglion morphogenesis","termid":"GO:0061559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cranial ganglion formation","synonyms":[{"name":"cranial ganglia formation","type":"related"}],"termid":"GO:0061560"}


id: GO:1901172
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving phytoene.","definition_xrefs":["UniPathway:UPA00799","GOC:yaf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carotene metabolic process","termid":"GO:0016119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"phytoene metabolic process","synonyms":[{"name":"phytoene metabolism","type":"exact"}],"termid":"GO:1901172"}


id: PBO:0049242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"granulin precursor","termid":"PBO:0049242"}


id: PBO:0050736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family D (Hsp60) member 1 pseudogene 22","termid":"PBO:0050736"}


id: GO:1904499
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of chromatin-mediated maintenance of transcription.","definition_xrefs":["GOC:BHF","GO_REF:0000058","GOC:nc","GOC:BHF_telomere","GOC:TermGenie","PMID:22723415"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of chromatin-mediated maintenance of transcription (obsolete GO:1904499)","termid":"GO:1904499"}


id: SO:0001157
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence element characteristic of some RNA polymerase II promoters, located immediately upstream of some TATA box elements with respect to the TSS (+1). Consensus sequence is YGGTCACACTR. Marked spatial preference within core promoter; tend to occur near the TSS, although not as tightly as INR (SO:0000014).","definition_xrefs":["PMID:16827941:12537576"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMv4_motif","synonyms":[{"name":"DMv4","type":"exact"},{"name":"DMv4 motif","type":"exact"},{"name":"YGGTCACATR","type":"narrow"},{"name":"directional motif v4","type":"exact"},{"name":"motif 1 element","type":"exact"},{"name":"promoter motif 1","type":"exact"}],"termid":"SO:0001157"}


id: GO:0016855
data:
  {"annotated_genes":["SJAG_04298","SJAG_00036"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[66951,62923],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047661"}]},"cv_name":"molecular_function","definition":"Catalysis of a reaction that alters the configuration of one or more chiral centers in an amino acid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity","termid":"GO:0016854"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00036":null,"SJAG_04298":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"racemase and epimerase activity, acting on amino acids and derivatives","references_by_uniquename":{"GO_REF:0000002":null},"secondary_identifiers":["EC:5.1.1.-"],"termid":"GO:0016855","terms_by_termid":{"GO:0047661":null}}


id: SO:0000744
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"DNA belonging to the genome of a chromoplast, a colored plastid for synthesis and storage of pigments.","direct_ancestors":[{"relation_name":"is_a","term_name":"plastid_sequence","termid":"SO:0000740"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromoplast_sequence","synonyms":[{"name":"chromoplast sequence","type":"exact"}],"termid":"SO:0000744"}


id: PBO:0079565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin associated protein 2 like","termid":"PBO:0079565"}


id: MONDO:0006736
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Abnormal development of immature squamous epithelial cells of the uterine cervix, a term used to describe premalignant cytological changes in the cervical epithelium. These atypical cells do not penetrate the epithelial basement membrane.","definition_xrefs":["MESH:D002578"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive system disorder","termid":"MONDO:0005039"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dysplasia of cervix","secondary_identifiers":["SCTID:73391008","ICD9:622.10","MedDRA:10013957","EFO:1000910","ICD9:622.11","ICD9:622.1","UMLS:C0007868","MEDGEN:2971"],"termid":"MONDO:0006736","xrefs":{"Monarch":{"xref_id":"0006736"}}}


id: GO:1901457
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of response to acetate.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"regulates","term_name":"response to acetate","termid":"GO:0010034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of response to acetate","termid":"GO:1901457"}


id: FYPO:0001027
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the mitotic cell cycle is arrested normally at the mitotic G2/M phase transition when the cell is subject to glucose starvation.","definition_xrefs":["PomBase:mah","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normally arrested mitotic cell cycle progression","termid":"FYPO:0001025"},{"relation_name":"is_a","term_name":"cell cycle arrest at mitotic G2/M phase transition during starvation","termid":"FYPO:0001151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000257","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"normal cell cycle arrest at mitotic G2/M phase transition during glucose starvation","synonyms":[{"name":"normal cell cycle arrest at mitotic G2/M phase transition during glucose depletion","type":"exact"},{"name":"normal cell cycle arrest at mitotic G2/M phase transition during glucose deprivation","type":"exact"},{"name":"normal cell cycle arrest at mitotic G2/M phase transition during glucose limitation","type":"related"},{"name":"normal cell cycle arrest in mitotic G2 phase during glucose starvation","type":"related"},{"name":"normal mitotic cell cycle arrest at mitotic G2/M phase transition during glucose starvation","type":"exact"}],"termid":"FYPO:0001027"}


id: PBO:0079150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetraspanin 11","termid":"PBO:0079150"}


id: GO:0007557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of juvenile hormone.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of juvenile hormone metabolic process","termid":"GO:0007556"},{"relation_name":"is_a","term_name":"regulation of hormone biosynthetic process","termid":"GO:0046885"},{"relation_name":"is_a","term_name":"regulation of lipid biosynthetic process","termid":"GO:0046890"},{"relation_name":"regulates","term_name":"juvenile hormone biosynthetic process","termid":"GO:0006718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0019748"],"is_obsolete":false,"name":"regulation of juvenile hormone biosynthetic process","synonyms":[{"name":"regulation of juvenile hormone anabolism","type":"exact"},{"name":"regulation of juvenile hormone biosynthesis","type":"exact"},{"name":"regulation of juvenile hormone formation","type":"exact"},{"name":"regulation of juvenile hormone synthesis","type":"exact"}],"termid":"GO:0007557"}


id: MONDO:0003872
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A serous cystadenoma of the ovary characterized by the presence of small papillary projections in the inner surface of the cysts.","definition_xrefs":["NCIT:C7278"],"direct_ancestors":[{"relation_name":"is_a","term_name":"papillary adenoma","termid":"MONDO:0002533"},{"relation_name":"is_a","term_name":"ovarian papillary tumor","termid":"MONDO:0003813"},{"relation_name":"is_a","term_name":"ovarian cystadenoma","termid":"MONDO:0005183"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ovarian papillary cystadenoma","secondary_identifiers":["MEDGEN:233276","UMLS:C1335175","DOID:6405"],"synonyms":[{"name":"ovarian papillary cystadenoma","type":"exact"}],"termid":"MONDO:0003872","xrefs":{"Monarch":{"xref_id":"0003872"}}}


id: PR:Q10071
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A CAAX prenyl protease 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10120:SF17","OMA:SCHPO00795","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CAAX prenyl protease 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H1.05","secondary_identifiers":["UniProtKB:Q10071"],"synonyms":[{"name":"PPSEP 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ZMPSTE24","type":"exact"},{"name":"prenyl protein-specific endoprotease 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10071"}


id: PBO:0075877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST3 beta-galactoside alpha-2,3-sialyltransferase 4","termid":"PBO:0075877"}


id: MONDO:0012900
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any familial isolated restrictive cardiomyopathy in which the cause of the disease is a mutation in the TNNT2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial restrictive cardiomyopathy","termid":"MONDO:0016340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"cardiomyopathy, familial restrictive, 3","secondary_identifiers":["MEDGEN:382807","UMLS:C2676271","DOID:0111427","GARD:18072","MESH:C567316","OMIM:612422"],"synonyms":[{"name":"RCM3","type":"related"},{"name":"TNNT2 familial isolated restrictive cardiomyopathy","type":"exact"},{"name":"cardiomyopathy, familial restrictive, 3","type":"exact"},{"name":"cardiomyopathy, familial restrictive, type 3","type":"exact"},{"name":"familial isolated restrictive cardiomyopathy caused by mutation in TNNT2","type":"exact"}],"termid":"MONDO:0012900","xrefs":{"Monarch":{"xref_id":"0012900"}}}


id: GO:0099401
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region of a caveola that extends into the cytoplasm, excluding the neck (rim). This region is associated with intracellular caveola proteins.","definition_xrefs":["GOC:PARL","GOC:POD","PMID:17227843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane microdomain","termid":"GO:0098857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"caveola bulb","synonyms":[{"name":"caveola crater","type":"exact"}],"termid":"GO:0099401"}


id: PBO:0013077
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not functionally complement E. coli hisB","termid":"PBO:0013077"}


id: PBO:0111334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Cic1/Utp30 family involved in ribosome biogenesis","termid":"PBO:0111334"}


id: GO:0043036
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Plant storage body for amylose and amylopectin, 1-100um in diameter. Also contains small amounts of enzymes, amino acids, lipids and nucleic acids. The shape of the grain varies widely amongst species, but is often spherical or disk-shaped.","definition_xrefs":["GOC:jl","PMID:11217978"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"plastid","termid":"GO:0009536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"starch grain","synonyms":[{"name":"starch granule","type":"exact"}],"termid":"GO:0043036"}


id: FYPO:0001556
data:
  {"alleles_by_uniquename":{"SJAG_01906:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01906","name":"nem1delta","uniquename":"SJAG_01906:allele-1"},"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"},"SJAG_02763:allele-2":{"allele_type":"amino_acid_mutation","description":"D422E,D424E","gene_uniquename":"SJAG_02763","name":"ned1cat","synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"},"SJAG_02763:allele-4":{"allele_type":"amino_acid_mutation","description":"S235E; S651E","gene_uniquename":"SJAG_02763","name":"ned1S235E/S651E","synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"},"SJAG_02763:allele-5":{"allele_type":"amino_acid_mutation","description":"S499E; S538E; T620E; T638E; S651E","gene_uniquename":"SJAG_02763","name":"ned1-5E","uniquename":"SJAG_02763:allele-5"},"SJAG_03940:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03940","name":"nem2delta","uniquename":"SJAG_03940:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119042,119043,119046,119050,119055,119058],"is_not":false,"summary":null,"term":"FYPO:0001556"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain more nuclear envelope than normal. Excess nuclear envelopes may take the form of intranuclear membrane stacks or invaginations, or small cytoplasmic spheres that are attached to the nucleus, have double lipid bilayer membranes, and may contain structures resembling nuclear pores.","definition_xrefs":["PMID:22156749","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear envelope morphology during vegetative growth","termid":"FYPO:0000769"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01906":null,"SJAG_02763":null,"SJAG_03940":null},"genotype_count":6,"genotypes_by_uniquename":{"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1-5E(S499E; S538E; T620E; T638E; S651E aa)","display_uniquename":"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-5","expression":"Not assayed or wild type"}]}]},"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1S235E/S651E(S235E; S651E aa)","display_uniquename":"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-4","expression":"Not assayed or wild type"}]}]},"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1cat(D422E,D424E aa)","display_uniquename":"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-2","expression":"Not assayed or wild type"}]}]},"ned1delta":{"display_name":"ned1delta","display_uniquename":"ned1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}]},"nem1delta":{"display_name":"nem1delta","display_uniquename":"nem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01906:allele-1","expression":"Null"}]}]},"nem2delta":{"display_name":"nem2delta","display_uniquename":"nem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03940:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0002403"],"is_obsolete":false,"name":"excess nuclear envelope present","references_by_uniquename":{"PMID:26774782":null},"single_locus_annotated_genes":["SJAG_03940","SJAG_01906","SJAG_02763"],"single_locus_genotype_uniquenames":["ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","ned1delta","nem1delta","ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","nem2delta","ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"excess nuclear envelope present during mitotic cell cycle","type":"related"},{"name":"excess nuclear envelope present during vegetative growth","type":"exact"},{"name":"increased nuclear envelope proliferation","type":"related"},{"name":"nuclear envelope present in greater amount","type":"exact"}],"termid":"FYPO:0001556","terms_by_termid":{"FYPO:0001556":null,"FYPO_EXT:0000001":null}}


id: PBO:0046392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endothelial PAS domain protein 1","termid":"PBO:0046392"}


id: GO:0004940
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with epinephrine or norepinephrine to initiate a change in cell activity via activation of a G protein, with pharmacological characteristics of beta1-adrenergic receptors.","definition_xrefs":["GOC:mah","IUPHAR_GPCR:1274"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-adrenergic receptor activity","termid":"GO:0004939"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"beta1-adrenergic receptor activity","synonyms":[{"name":"beta1 adrenoceptor","type":"exact"}],"termid":"GO:0004940"}


id: PBO:0004787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PWWP domain protein (predicted)","termid":"PBO:0004787"}


id: MONDO:0024307
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hemorrhagic disease","termid":"MONDO:0002243"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"prothrombin deficiency","secondary_identifiers":["MEDGEN:1651913","UMLS:C4722227"],"termid":"MONDO:0024307","xrefs":{"Monarch":{"xref_id":"0024307"}}}


id: MONDO:0008072
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"IgA glomerulonephritis","termid":"MONDO:0005342"},{"relation_name":"is_a","term_name":"IgA nephropathy, susceptibility to","termid":"MONDO:0100555"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IgA nephropathy, susceptibility to, 1","secondary_identifiers":["OMIM:161950","UMLS:C3160719","MEDGEN:463619"],"synonyms":[{"name":"IGAN1","type":"exact"},{"name":"IgA nephropathy, susceptibility to, 1","type":"exact"},{"name":"Igan","type":"related"},{"name":"berger disease","type":"related"},{"name":"glomerulonephritis, IgA","type":"related"},{"name":"nephritis, IgA type","type":"related"}],"termid":"MONDO:0008072","xrefs":{"Monarch":{"xref_id":"0008072"}}}


id: PBO:0030998
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_degradation_during_vegetative_growth","termid":"PBO:0030998"}


id: PBO:0052676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 44","termid":"PBO:0052676"}


id: GO:1904570
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of selenocysteine incorporation.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:21685449"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of translational elongation","termid":"GO:0045900"},{"relation_name":"is_a","term_name":"regulation of selenocysteine incorporation","termid":"GO:1904569"},{"relation_name":"negatively_regulates","term_name":"selenocysteine incorporation","termid":"GO:0001514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of selenocysteine incorporation","synonyms":[{"name":"down regulation of selenocysteine incorporation","type":"exact"},{"name":"down-regulation of selenocysteine incorporation","type":"exact"},{"name":"downregulation of selenocysteine incorporation","type":"exact"},{"name":"inhibition of selenocysteine incorporation","type":"narrow"}],"termid":"GO:1904570"}


id: GO:0047524
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 16-alpha-hydroxysteroid = 16-beta-hydroxysteroid.","definition_xrefs":["RHEA:15829"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity","termid":"GO:0016854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"16-hydroxysteroid epimerase activity","secondary_identifiers":["MetaCyc:16-HYDROXYSTEROID-EPIMERASE-RXN","EC:5.1.99.2"],"synonyms":[{"name":"16-hydroxysteroid 16-epimerase activity","type":"related"}],"termid":"GO:0047524"}


id: MONDO:0036990
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A Leydig cell tumor which does not recur or metastasize. Morphologically, there is no evidence of cellular atypia, increased mitotic activity, necrosis, or vascular invasion.","definition_xrefs":["NCIT:C4212"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Leydig cell tumor","termid":"MONDO:0006266"},{"relation_name":"is_a","term_name":"sex cord-stromal benign neoplasm","termid":"MONDO:0024988"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign Leydig cell tumor","secondary_identifiers":["UMLS:C0334409","ICDO:8650/0","MEDGEN:83142"],"synonyms":[{"name":"Leydig cell tumor, benign","type":"exact"},{"name":"adenoma, interstitial","type":"exact"},{"name":"benign Leydig cell neoplasm","type":"exact"},{"name":"benign Leydig cell tumor","type":"exact"},{"name":"benign interstitial cell neoplasm","type":"exact"},{"name":"benign interstitial cell tumor","type":"exact"},{"name":"benign interstitial cell tumour","type":"exact"}],"termid":"MONDO:0036990","xrefs":{"Monarch":{"xref_id":"0036990"}}}


id: GO:0086013
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which ions are transported across a membrane such that the cardiac muscle cell plasma membrane potential changes in the direction from the positive membrane potential at the peak of the action potential towards the negative resting potential.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane repolarization during action potential","termid":"GO:0086011"},{"relation_name":"is_a","term_name":"cardiac muscle cell membrane repolarization","termid":"GO:0099622"},{"relation_name":"part_of","term_name":"cardiac muscle cell action potential","termid":"GO:0086001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"membrane repolarization during cardiac muscle cell action potential","termid":"GO:0086013"}


id: GO:1990091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The sodium-dependent hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their own peptide bonds.","definition_xrefs":["PMID:20460380"],"direct_ancestors":[{"relation_name":"is_a","term_name":"self proteolysis","termid":"GO:0097264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sodium-dependent self proteolysis","termid":"GO:1990091"}


id: GO:0008701
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-hydroxy-2-oxopentanoate = acetaldehyde + pyruvate.","definition_xrefs":["RHEA:22624","EC:4.1.3.39"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxo-acid-lyase activity","termid":"GO:0016833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"4-hydroxy-2-oxovalerate aldolase activity","secondary_identifiers":["UM-BBD_enzymeID:r0100","MetaCyc:MHPELY-RXN","GO:0018804","KEGG_REACTION:R00750"],"synonyms":[{"name":"4-hydroxy-2-ketovalerate aldolase activity","type":"related"},{"name":"4-hydroxy-2-oxopentanoate pyruvate-lyase (acetaldehyde-forming) activity","type":"related"},{"name":"4-hydroxy-2-oxopentanoate pyruvate-lyase activity","type":"related"},{"name":"4-hydroxy-2-oxovalerate pyruvate-lyase activity","type":"related"},{"name":"DmpG","type":"related"},{"name":"HOA","type":"related"}],"termid":"GO:0008701"}


id: PBO:0067686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5.8S ribosomal 3","termid":"PBO:0067686"}


id: MONDO:0850285
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An intrinsic asthma that is characterized by exposure to tobacco smoke and other inflammatory gasses or particulate matter.","definition_xrefs":["DOID:0080819"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intrinsic asthma","termid":"MONDO:0004765"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"environmental induced asthma","termid":"MONDO:0850285","xrefs":{"Monarch":{"xref_id":"0850285"}}}


id: PBO:0039627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annexin A9","termid":"PBO:0039627"}


id: PBO:0042965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 3","termid":"PBO:0042965"}


id: PBO:0086502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative positive regulator of mannosylphosphate transferase Mnn6p; involved in mannosylphosphorylation of N-linked oligosaccharides; may also function as a mannosylphosphate transferase; expression increases in late-logarithmic and stationary growth phases; coding sequence contains length polymorphisms in different strains; MNN4 has a paralog, YJR061W, that arose from the whole genome duplication","termid":"PBO:0086502"}


id: GO:0006325
data:
  {"annotated_genes":["SJAG_04574","SJAG_02908","SJAG_02592","SJAG_04768","SJAG_00266","SJAG_01146","SJAG_02798","SJAG_04758","SJAG_04596","SJAG_03394","SJAG_01867","SJAG_03230","SJAG_02549","SJAG_02342","SJAG_05273","SJAG_04581","SJAG_02409","SJAG_03905","SJAG_04879","SJAG_01711","SJAG_03627","SJAG_03619","SJAG_03997","SJAG_01610","SJAG_00545","SJAG_03668","SJAG_02846","SJAG_02119","SJAG_03900","SJAG_03664","SJAG_01465","SJAG_03787","SJAG_01511","SJAG_02659","SJAG_01230","SJAG_02319","SJAG_00170","SJAG_00441","SJAG_04114","SJAG_04613","SJAG_01675","SJAG_04755","SJAG_04005","SJAG_00676","SJAG_03128","SJAG_00934","SJAG_01878","SJAG_01707","SJAG_03680","SJAG_00896","SJAG_02756","SJAG_03366","SJAG_01331","SJAG_02466","SJAG_03047","SJAG_03945","SJAG_00769","SJAG_00873","SJAG_01837","SJAG_02198","SJAG_01579","SJAG_01540","SJAG_02170","SJAG_03628","SJAG_04396","SJAG_02035","SJAG_01873","SJAG_07011","SJAG_02723","SJAG_02382","SJAG_04989","SJAG_01046","SJAG_04061","SJAG_00087","SJAG_02447","SJAG_04508","SJAG_02698","SJAG_03356","SJAG_02621","SJAG_01938","SJAG_00581","SJAG_03758","SJAG_04561","SJAG_02981","SJAG_00678","SJAG_00307","SJAG_03926","SJAG_03776","SJAG_04815","SJAG_00701","SJAG_01622","SJAG_00943","SJAG_02594","SJAG_03042","SJAG_03033","SJAG_05019","SJAG_00942","SJAG_02311","SJAG_04576","SJAG_04274","SJAG_05161","SJAG_06608","SJAG_04194","SJAG_02500","SJAG_03036","SJAG_02416","SJAG_02990","SJAG_02589","SJAG_00682","SJAG_04793","SJAG_01193","SJAG_02701","SJAG_00259","SJAG_04186","SJAG_05193","SJAG_01016","SJAG_00618","SJAG_03941","SJAG_03418","SJAG_02768","SJAG_05282","SJAG_04205","SJAG_00440","SJAG_00746","SJAG_00045","SJAG_01611","SJAG_01713","SJAG_01992","SJAG_00349","SJAG_00783","SJAG_02629","SJAG_03118","SJAG_00961","SJAG_01008","SJAG_00735","SJAG_01804","SJAG_02066","SJAG_00341","SJAG_03387","SJAG_03635","SJAG_03599","SJAG_03942","SJAG_01050","SJAG_00684","SJAG_02439","SJAG_03867","SJAG_04696","SJAG_01005","SJAG_00302","SJAG_04272","SJAG_04039","SJAG_05020","SJAG_01082","SJAG_02314","SJAG_02458","SJAG_04692","SJAG_01836","SJAG_03145","SJAG_02401","SJAG_01926","SJAG_06641","SJAG_04547","SJAG_01475","SJAG_03944","SJAG_03982","SJAG_04190","SJAG_03006","SJAG_04389","SJAG_02869","SJAG_03548","SJAG_01745","SJAG_02571","SJAG_00160","SJAG_03916","SJAG_00925","SJAG_04253","SJAG_03792","SJAG_03689","SJAG_02165","SJAG_03832","SJAG_04355","SJAG_01009","SJAG_00913","SJAG_04141","SJAG_02906","SJAG_03884","SJAG_00184","SJAG_00868","SJAG_04369","SJAG_01385","SJAG_02576","SJAG_01075","SJAG_02778","SJAG_00914","SJAG_02385","SJAG_03546","SJAG_03603","SJAG_01823","SJAG_00414","SJAG_02348","SJAG_01513","SJAG_00058","SJAG_00510","SJAG_00411","SJAG_02074","SJAG_03576","SJAG_03752","SJAG_00584","SJAG_00596","SJAG_01831","SJAG_02817","SJAG_03537","SJAG_00756","SJAG_04293","SJAG_03630","SJAG_00796","SJAG_03579","SJAG_01111","SJAG_03487","SJAG_02872","SJAG_04942","SJAG_03441","SJAG_00336","SJAG_04257","SJAG_04670","SJAG_05192","SJAG_04097","SJAG_01599","SJAG_01204","SJAG_03694","SJAG_03844","SJAG_04038","SJAG_00142","SJAG_00743","SJAG_03543","SJAG_05313","SJAG_03624","SJAG_03567","SJAG_03193","SJAG_03431","SJAG_04030","SJAG_02551","SJAG_00303","SJAG_00641","SJAG_01110","SJAG_02927","SJAG_02773","SJAG_01325","SJAG_03041","SJAG_01601","SJAG_02303","SJAG_03255","SJAG_00187","SJAG_03542","SJAG_02347","SJAG_03839","SJAG_00739","SJAG_02254","SJAG_02725","SJAG_01067","SJAG_04213","SJAG_00320","SJAG_01658","SJAG_02873","SJAG_00293","SJAG_02381","SJAG_03286","SJAG_02541","SJAG_02606","SJAG_02622","SJAG_02329","SJAG_00335","SJAG_03183","SJAG_01653"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57905,63856,65371,68292,79321,105741,112397,112974],"is_not":false,"summary":null,"term":"GO:0006325"},{"annotations":[94185,81615,113820,116070,89525,98646,114681,102435,92266,94966,118445,101591,106899,105915,112703,73113,98898,117305,118481,88330],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034080"},{"annotations":[109233,101930],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140898"},{"annotations":[89137,87261,95738,107291,107375,90388,110126,116468],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140588"},{"annotations":[58754,72701,59623,112671,66683,68546,64190,68871,97978,107479,78277,60649,66152,58765,103966,117328,69936,59547,58246,78062,97652,59034,65887,94815,71879,74686,104169,113114,66540,61615,64714,69928,93430,62605,72180,106067,69028,88282],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006338"},{"annotations":[113195],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140719"},{"annotations":[103565,104260,94562,96724,93783,90159,98899,92267,98411,103752,91847,114315,118193,75558,94094,98647,98471,106429,99186,108632,115201,88331,94318,107282,112737,74173],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140861"},{"annotations":[94319,109790,101087,76285,101028,107283,61219,109514,110851,113196,115005,89527,81618],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006335"},{"annotations":[118474,90710,69829,60192,115812,66563,92864],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0040029"},{"annotations":[61249,93556],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140718"},{"annotations":[116733,112204,112642,64598,114853,87609,93557,117363,95657,98629,90219,102584,61243,98412,112203,98655],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0033696"},{"annotations":[76553,119269,75546,74019,119270,72095,74650,81742,74961,115007,72132,78457],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031507"},{"annotations":[96155,90815,116761],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070828"},{"annotations":[96718,96831,113743,92716,92677,102647],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045814"},{"annotations":[79119,106205],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0061188"},{"annotations":[108051],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0060906"},{"annotations":[95954,75028,71626,80649,90585,114140,62958,74775,90586,107285],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0006334"},{"annotations":[96589,89528,116509],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006337"},{"annotations":[59176,76570,110852,112883],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034728"},{"annotations":[89676,92919,102309,111692,103620,112212,114021,97759,91549,113584,110853,112884,103721,93559,92300,64601,93827,107719,112213,61247,74174],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031508"},{"annotations":[90819],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140462"},{"annotations":[98472],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0031453"},{"annotations":[90655],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0090053"},{"annotations":[93853,109917,90656],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0090055"},{"annotations":[107720,103621,111693,112885,74177,72708,91550],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0000183"},{"annotations":[90278,98073],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0031445"},{"annotations":[99819,96690],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090052"},{"annotations":[117364],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0010964"},{"annotations":[117365,117736,96691,99820,91342],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1902801"},{"annotations":[108685,103622,106908,107337,111440,112644],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031048"},{"annotations":[93560,93829,110060,111694,107721,90745,113263,117596,110790,112886,111796,117713,99075,103623,107534,110854,113586,61246,92229,98636,115586,95016,73419,118446,96236,115025,117307,103722],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030466"},{"annotations":[103723,110061,86941,111695,90261,116141],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902794"},{"annotations":[105860],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902795"},{"annotations":[113587],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0141194"},{"annotations":[113906,114167,113264,110791,88234,115588,117308,96237,98637,99077,94834,88291,117715,117597,106103,93572,111797,118447,110062,110229,115026,90746],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140727"},{"annotations":[98638,89677,90747,60414,107722,112887,97760,111696,96238,74175,61248,79124,93561,103624,113265,117309,113588,93830,110063,111798,110855,117716,118448,91552],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031509"},{"annotations":[91854,116510,108344,114142,89529,115813,90713,94098,113198,110856,94977,92865,118475,103093,108349],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140673"},{"annotations":[94969,93488,112141,89260,113833,114317,98008,87948,114987,107236,112739,116142,103377,90161,87612,111334,114855,106999,109149,95381,93598,59022,92986,93612,96157,108024,114611,117060,117175,93785,113998,98174,109041,96591,106884,113822,87110,64478,93660,92268,94130,97742,87254,110049,67654,89530,94944,102648,104106,93257,107436,61511,108634,112909,90175,67708,115308,117577,105317,116880,88746,116511,66090,87432,98650,98900,91770,101088,90884,95388,108918,113907,93632,117153,112719,117224,97328,87797,115950,105169,110185,112565,100496,88333,102893,104572,115001,95955,106303,106455],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045815"},{"annotations":[116143],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0141005"}]},"cv_name":"biological_process","definition":"The assembly or remodeling of chromatin composed of DNA complexed with histones, other associated proteins, and sometimes RNA.","definition_xrefs":["PMID:20404130"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"}],"gene_count":274,"genes_by_uniquename":{"SJAG_00045":null,"SJAG_00058":null,"SJAG_00087":null,"SJAG_00142":null,"SJAG_00160":null,"SJAG_00170":null,"SJAG_00184":null,"SJAG_00187":null,"SJAG_00259":null,"SJAG_00266":null,"SJAG_00293":null,"SJAG_00302":null,"SJAG_00303":null,"SJAG_00307":null,"SJAG_00320":null,"SJAG_00335":null,"SJAG_00336":null,"SJAG_00341":null,"SJAG_00349":null,"SJAG_00411":null,"SJAG_00414":null,"SJAG_00440":null,"SJAG_00441":null,"SJAG_00510":null,"SJAG_00545":null,"SJAG_00581":null,"SJAG_00584":null,"SJAG_00596":null,"SJAG_00618":null,"SJAG_00641":null,"SJAG_00676":null,"SJAG_00678":null,"SJAG_00682":null,"SJAG_00684":null,"SJAG_00701":null,"SJAG_00735":null,"SJAG_00739":null,"SJAG_00743":null,"SJAG_00746":null,"SJAG_00756":null,"SJAG_00769":null,"SJAG_00783":null,"SJAG_00796":null,"SJAG_00868":null,"SJAG_00873":null,"SJAG_00896":null,"SJAG_00913":null,"SJAG_00914":null,"SJAG_00925":null,"SJAG_00934":null,"SJAG_00942":null,"SJAG_00943":null,"SJAG_00961":null,"SJAG_01005":null,"SJAG_01008":null,"SJAG_01009":null,"SJAG_01016":null,"SJAG_01046":null,"SJAG_01050":null,"SJAG_01067":null,"SJAG_01075":null,"SJAG_01082":null,"SJAG_01110":null,"SJAG_01111":null,"SJAG_01146":null,"SJAG_01193":null,"SJAG_01204":null,"SJAG_01230":null,"SJAG_01325":null,"SJAG_01331":null,"SJAG_01385":null,"SJAG_01465":null,"SJAG_01475":null,"SJAG_01511":null,"SJAG_01513":null,"SJAG_01540":null,"SJAG_01579":null,"SJAG_01599":null,"SJAG_01601":null,"SJAG_01610":null,"SJAG_01611":null,"SJAG_01622":null,"SJAG_01653":null,"SJAG_01658":null,"SJAG_01675":null,"SJAG_01707":null,"SJAG_01711":null,"SJAG_01713":null,"SJAG_01745":null,"SJAG_01804":null,"SJAG_01823":null,"SJAG_01831":null,"SJAG_01836":null,"SJAG_01837":null,"SJAG_01867":null,"SJAG_01873":null,"SJAG_01878":null,"SJAG_01926":null,"SJAG_01938":null,"SJAG_01992":null,"SJAG_02035":null,"SJAG_02066":null,"SJAG_02074":null,"SJAG_02119":null,"SJAG_02165":null,"SJAG_02170":null,"SJAG_02198":null,"SJAG_02254":null,"SJAG_02303":null,"SJAG_02311":null,"SJAG_02314":null,"SJAG_02319":null,"SJAG_02329":null,"SJAG_02342":null,"SJAG_02347":null,"SJAG_02348":null,"SJAG_02381":null,"SJAG_02382":null,"SJAG_02385":null,"SJAG_02401":null,"SJAG_02409":null,"SJAG_02416":null,"SJAG_02439":null,"SJAG_02447":null,"SJAG_02458":null,"SJAG_02466":null,"SJAG_02500":null,"SJAG_02541":null,"SJAG_02549":null,"SJAG_02551":null,"SJAG_02571":null,"SJAG_02576":null,"SJAG_02589":null,"SJAG_02592":null,"SJAG_02594":null,"SJAG_02606":null,"SJAG_02621":null,"SJAG_02622":null,"SJAG_02629":null,"SJAG_02659":null,"SJAG_02698":null,"SJAG_02701":null,"SJAG_02723":null,"SJAG_02725":null,"SJAG_02756":null,"SJAG_02768":null,"SJAG_02773":null,"SJAG_02778":null,"SJAG_02798":null,"SJAG_02817":null,"SJAG_02846":null,"SJAG_02869":null,"SJAG_02872":null,"SJAG_02873":null,"SJAG_02906":null,"SJAG_02908":null,"SJAG_02927":null,"SJAG_02981":null,"SJAG_02990":null,"SJAG_03006":null,"SJAG_03033":null,"SJAG_03036":null,"SJAG_03041":null,"SJAG_03042":null,"SJAG_03047":null,"SJAG_03118":null,"SJAG_03128":null,"SJAG_03145":null,"SJAG_03183":null,"SJAG_03193":null,"SJAG_03230":null,"SJAG_03255":null,"SJAG_03286":null,"SJAG_03356":null,"SJAG_03366":null,"SJAG_03387":null,"SJAG_03394":null,"SJAG_03418":null,"SJAG_03431":null,"SJAG_03441":null,"SJAG_03487":null,"SJAG_03537":null,"SJAG_03542":null,"SJAG_03543":null,"SJAG_03546":null,"SJAG_03548":null,"SJAG_03567":null,"SJAG_03576":null,"SJAG_03579":null,"SJAG_03599":null,"SJAG_03603":null,"SJAG_03619":null,"SJAG_03624":null,"SJAG_03627":null,"SJAG_03628":null,"SJAG_03630":null,"SJAG_03635":null,"SJAG_03664":null,"SJAG_03668":null,"SJAG_03680":null,"SJAG_03689":null,"SJAG_03694":null,"SJAG_03752":null,"SJAG_03758":null,"SJAG_03776":null,"SJAG_03787":null,"SJAG_03792":null,"SJAG_03832":null,"SJAG_03839":null,"SJAG_03844":null,"SJAG_03867":null,"SJAG_03884":null,"SJAG_03900":null,"SJAG_03905":null,"SJAG_03916":null,"SJAG_03926":null,"SJAG_03941":null,"SJAG_03942":null,"SJAG_03944":null,"SJAG_03945":null,"SJAG_03982":null,"SJAG_03997":null,"SJAG_04005":null,"SJAG_04030":null,"SJAG_04038":null,"SJAG_04039":null,"SJAG_04061":null,"SJAG_04097":null,"SJAG_04114":null,"SJAG_04141":null,"SJAG_04186":null,"SJAG_04190":null,"SJAG_04194":null,"SJAG_04205":null,"SJAG_04213":null,"SJAG_04253":null,"SJAG_04257":null,"SJAG_04272":null,"SJAG_04274":null,"SJAG_04293":null,"SJAG_04355":null,"SJAG_04369":null,"SJAG_04389":null,"SJAG_04396":null,"SJAG_04508":null,"SJAG_04547":null,"SJAG_04561":null,"SJAG_04574":null,"SJAG_04576":null,"SJAG_04581":null,"SJAG_04596":null,"SJAG_04613":null,"SJAG_04670":null,"SJAG_04692":null,"SJAG_04696":null,"SJAG_04755":null,"SJAG_04758":null,"SJAG_04768":null,"SJAG_04793":null,"SJAG_04815":null,"SJAG_04879":null,"SJAG_04942":null,"SJAG_04989":null,"SJAG_05019":null,"SJAG_05020":null,"SJAG_05161":null,"SJAG_05192":null,"SJAG_05193":null,"SJAG_05273":null,"SJAG_05282":null,"SJAG_05313":null,"SJAG_06608":null,"SJAG_06641":null,"SJAG_07011":null},"genotype_count":0,"in_subsets":["bp_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chromatin organization","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"GO_REF:0000117":null,"PMID:35226668":null},"secondary_identifiers":["GO:0006336","GO:0016568","GO:0034724","GO:0006333","Reactome:R-HSA-4839726","GO:0031497"],"synonyms":[{"name":"DNA replication-independent chromatin assembly","type":"narrow"},{"name":"DNA replication-independent chromatin organization","type":"narrow"},{"name":"DNA replication-independent nucleosome organisation","type":"narrow"},{"name":"DNA replication-independent nuclesome assembly","type":"narrow"},{"name":"chromatin assembly","type":"narrow"},{"name":"chromatin assembly or disassembly","type":"related"},{"name":"chromatin assembly/disassembly","type":"related"},{"name":"chromatin maintenance","type":"broad"},{"name":"chromatin modification","type":"related"},{"name":"chromatin organisation","type":"exact"},{"name":"establishment of chromatin architecture","type":"exact"},{"name":"establishment or maintenance of chromatin architecture","type":"exact"},{"name":"transcription-coupled nucleosome assembly","type":"narrow"}],"termid":"GO:0006325","terms_by_termid":{"GO:0000183":null,"GO:0006325":null,"GO:0006334":null,"GO:0006335":null,"GO:0006337":null,"GO:0006338":null,"GO:0010964":null,"GO:0030466":null,"GO:0031048":null,"GO:0031445":null,"GO:0031453":null,"GO:0031507":null,"GO:0031508":null,"GO:0031509":null,"GO:0033696":null,"GO:0034080":null,"GO:0034728":null,"GO:0040029":null,"GO:0045814":null,"GO:0045815":null,"GO:0060906":null,"GO:0061188":null,"GO:0070828":null,"GO:0090052":null,"GO:0090053":null,"GO:0090055":null,"GO:0140462":null,"GO:0140588":null,"GO:0140673":null,"GO:0140718":null,"GO:0140719":null,"GO:0140727":null,"GO:0140861":null,"GO:0140898":null,"GO:0141005":null,"GO:0141194":null,"GO:1902794":null,"GO:1902795":null,"GO:1902801":null}}


id: PBO:0089862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane potassium ion transmembrane transporter Trk2","termid":"PBO:0089862"}


id: GO:0032977
data:
  {"annotated_genes":["SJAG_01127","SJAG_00687","SJAG_05302","SJAG_02437","SJAG_01178","SJAG_05300","SJAG_02065","SJAG_03633","SJAG_00277","SJAG_01940","SJAG_02361","SJAG_00569","SJAG_01496"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76244,80329,80389,87374,92262,94325,103041,104328,109984,110586,111375,111840,113727],"is_not":false,"summary":null,"term":"GO:0032977"}]},"cv_name":"molecular_function","definition":"Binds transmembrane domain-containing proteins and mediates their integration into a membrane.","definition_xrefs":["PMID:14739936","PMID:29809151","PMID:32459176","PMID:30415835"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein carrier chaperone","termid":"GO:0140597"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00277":null,"SJAG_00569":null,"SJAG_00687":null,"SJAG_01127":null,"SJAG_01178":null,"SJAG_01496":null,"SJAG_01940":null,"SJAG_02065":null,"SJAG_02361":null,"SJAG_02437":null,"SJAG_03633":null,"SJAG_05300":null,"SJAG_05302":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140597"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140104"}],"interesting_parent_ids":["GO:0140597","GO:0140104","GO:0003674"],"is_obsolete":false,"name":"membrane insertase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9906955","Reactome:R-HSA-1299482","Reactome:R-HSA-1307803","Reactome:R-HSA-1268025","Reactome:R-HSA-9902096"],"termid":"GO:0032977","terms_by_termid":{"GO:0032977":null}}


id: GO:0047242
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a hydroxyanthraquinone + UDP-D-glucose = a glucosyloxyanthraquinone + UDP.","definition_xrefs":["EC:2.4.1.181"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"hydroxyanthraquinone glucosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.181-RXN"],"synonyms":[{"name":"UDP-glucose:hydroxyanthraquinone O-glucosyltransferase activity","type":"related"},{"name":"UDPglucose:hydroxyanthraquinone O-glucosyltransferase activity","type":"related"},{"name":"anthraquinone-specific glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-anthraquinone glucosyltransferase activity","type":"related"}],"termid":"GO:0047242"}


id: GO:0004489
data:
  {"annotated_genes":["SJAG_03712","SJAG_01466"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106312"},{"annotations":[96149,97914],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106313"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-methyltetrahydrofolate + NAD(P)+ = 5,10-methylenetetrahydrofolate + NAD(P)H + H+.","definition_xrefs":["EC:1.5.1.20","PMID:26872964"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","termid":"GO:0016646"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01466":null,"SJAG_03712":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"methylenetetrahydrofolate reductase [NAD(P)H] activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R01224","KEGG_REACTION:R07168","GO:0008702","MetaCyc:1.5.1.20-RXN","Reactome:R-HSA-200676"],"synonyms":[{"name":"5,10-CH(2)-H(4)folate reductase activity","type":"related"},{"name":"5,10-CH2-H4folate reductase activity","type":"related"},{"name":"5,10-methylenetetrahydrofolate reductase (FADH(2)) activity","type":"related"},{"name":"5,10-methylenetetrahydrofolate reductase (FADH) activity","type":"exact"},{"name":"5,10-methylenetetrahydrofolate reductase (FADH2) activity","type":"exact"},{"name":"5,10-methylenetetrahydrofolate reductase (NADPH) activity","type":"related"},{"name":"5,10-methylenetetrahydrofolate reductase activity","type":"broad"},{"name":"5,10-methylenetetrahydrofolic acid reductase activity","type":"broad"},{"name":"5,10-methylenetetrahydropteroylglutamate reductase activity","type":"related"},{"name":"5-methyltetrahydrofolate:(acceptor) oxidoreductase activity","type":"related"},{"name":"5-methyltetrahydrofolate:NAD oxidoreductase activity","type":"related"},{"name":"5-methyltetrahydrofolate:NAD(+) oxidoreductase activity","type":"related"},{"name":"5-methyltetrahydrofolate:NAD(P)+ oxidoreductase activity","type":"related"},{"name":"5-methyltetrahydrofolate:NAD+ oxidoreductase activity","type":"related"},{"name":"5-methyltetrahydrofolate:NADP(+) oxidoreductase activity","type":"related"},{"name":"5-methyltetrahydrofolate:NADP+ oxidoreductase activity","type":"related"},{"name":"MTHFR activity","type":"broad"},{"name":"MetF","type":"related"},{"name":"N(5),N(10)-methylenetetrahydrofolate reductase activity","type":"broad"},{"name":"N(5,10)-methylenetetrahydrofolate reductase activity","type":"broad"},{"name":"N5,10-methylenetetrahydrofolate reductase activity","type":"related"},{"name":"N5,N10-methylenetetrahydrofolate reductase activity","type":"related"},{"name":"methylenetetrahydrofolate (reduced nicotinamide adenine dinucleotide phosphate) reductase activity","type":"related"},{"name":"methylenetetrahydrofolate (reduced riboflavin adenine dinucleotide) reductase activity","type":"related"},{"name":"methylenetetrahydrofolate reductase (NADPH(2)) activity","type":"related"},{"name":"methylenetetrahydrofolate reductase (NADPH2)","type":"related"},{"name":"methylenetetrahydrofolate reductase [NAD(P)H]","type":"related"},{"name":"methylenetetrahydrofolate reductase activity","type":"broad"},{"name":"methylenetetrahydrofolic acid reductase activity","type":"broad"}],"termid":"GO:0004489","terms_by_termid":{"GO:0106312":null,"GO:0106313":null}}


id: MONDO:0009298
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GOMBO syndrome","secondary_identifiers":["OMIM:233270","MEDGEN:343515","UMLS:C1856274","MESH:C537284"],"synonyms":[{"name":"GOMBO syndrome","type":"exact"},{"name":"Growth retardation, ocular abnormalities, microcephaly, brachydactyly, and oligophrenia","type":"related"}],"termid":"MONDO:0009298","xrefs":{"Monarch":{"xref_id":"0009298"}}}


