# terms

id: PBO:0073635
data:
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id: PBO:0116952
data:
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id: GO:0007178
data:
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id: PBO:0083434
data:
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id: MONDO:0013226
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Combined immunodeficiency with faciooculoskeletal anomalies is an extremely rare combined immunodeficiency disorder characterized by primary immunodeficiency manifesting with repeated bacterial, viral and fungal infections, in association with neurological manifestations (hypotonia, cerebellar ataxia, myoclonic seizures), developmental delay, optic atrophy, facial dysmorphism (high forehead, hypoplastic supraorbital ridges, palpebral edema, hypertelorism, flat nasal bridge, broad nasal root and tip, anteverted nares, thin lower lip overlapped by upper lip, square chin) and skeletal anomalies (short metacarpals/metatarsals with cone-shaped epiphyses, osteopenia).","definition_xrefs":["Orphanet:221139"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn error of immunity","termid":"MONDO:0003778"},{"relation_name":"is_a","term_name":"combined immunodeficiency","termid":"MONDO:0015131"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"combined immunodeficiency with faciooculoskeletal anomalies","secondary_identifiers":["OMIM:613328","MESH:C567641","UMLS:C2750068","GARD:17139","MEDGEN:442377"],"synonyms":[{"name":"ROIFMAN-Chitayat syndrome","type":"related"},{"name":"Roifman-Chitayat syndrome","type":"exact"},{"name":"Roifman-Chitayat syndrome, digenic","type":"exact"},{"name":"combined immunodeficiency, Facial Dysmorphism, optic nerve atrophy, skeletal anomalies, and developmental delay","type":"related"}],"termid":"MONDO:0013226","xrefs":{"Monarch":{"xref_id":"0013226"}}}


id: PBO:0058437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5001","termid":"PBO:0058437"}


id: GO:0044283
data:
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id: PBO:0062193
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily R member 2 pseudogene","termid":"PBO:0062193"}


id: GO:0010133
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  {"annotated_genes":["SJAG_02235","SJAG_01903"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72012,79907],"is_not":false,"summary":null,"term":"GO:0010133"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-proline into L-glutamate.","definition_xrefs":["MetaCyc:PROUT-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate metabolic process","termid":"GO:0006536"},{"relation_name":"is_a","term_name":"L-proline catabolic process","termid":"GO:0006562"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01903":null,"SJAG_02235":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"L-proline catabolic process to L-glutamate","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["GO:0019494"],"synonyms":[{"name":"proline breakdown to glutamate","type":"exact"},{"name":"proline degradation to glutamate","type":"exact"},{"name":"proline oxidation","type":"related"}],"termid":"GO:0010133","terms_by_termid":{"GO:0010133":null}}


id: PBO:0017637
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin family protein Mpd1 (predicted)","termid":"PBO:0017637"}


id: GO:2001088
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a trisaccharideacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide transport","termid":"GO:0015772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"trisaccharide transport","termid":"GO:2001088"}


id: MONDO:1010817
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polydactyly that occurs in llama.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polydactyly, non-human animal","termid":"MONDO:1010158"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polydactyly, llama","secondary_identifiers":["OMIA:000810-9844"],"termid":"MONDO:1010817","xrefs":{"Monarch":{"xref_id":"1010817"}}}


id: PR:O13621
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An anoctamin-10 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02861","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C691.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC691.05c","secondary_identifiers":["UniProtKB:O13621"],"synonyms":[{"name":"Spom972h-ANO10","type":"exact"}],"termid":"PR:O13621"}


id: SO:0000087
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  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene from nuclear sequence.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"nuclear_sequence","termid":"SO:0000738"},{"relation_name":"is_a","term_name":"gene","termid":"SO:0000704"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear_gene","secondary_identifiers":["http://en.wikipedia.org/wiki/Nuclear_gene"],"synonyms":[{"name":"nuclear gene","type":"exact"}],"termid":"SO:0000087"}


id: FYPO:0002873
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell has a septum in the normal orientation perpendicular the long axis of the cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"},{"relation_name":"is_a","term_name":"normal septum location","termid":"FYPO:0002253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal septum orientation","synonyms":[{"name":"normal septum orientation during mitotic cell cycle","type":"related"},{"name":"normal septum orientation during vegetative growth","type":"exact"},{"name":"normal septum position","type":"related"}],"termid":"FYPO:0002873"}


id: PBO:0084600
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a discrete protein; YKL200C was originally annotated as an independent ORF, but as a result of a sequence change, it was merged with an adjacent ORF into a single reading frame, designated YKL201C","termid":"PBO:0084600"}


id: MONDO:0015831
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mullerian aplasia","termid":"MONDO:0019128"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unilateral aplasia of the mullerian ducts","secondary_identifiers":["GARD:20173","Orphanet:180071","MEDGEN:78600","UMLS:C0266389"],"synonyms":[{"name":"unicornuate uterus","type":"exact"},{"name":"unilateral aplasia of the Müllerian ducts","type":"related"}],"termid":"MONDO:0015831","xrefs":{"Monarch":{"xref_id":"0015831"}}}


id: GO:0070151
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of coupling histidine to histidyl-tRNA in a mitochondrion, catalyzed by histidyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.","definition_xrefs":["GOC:mah","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histidyl-tRNA aminoacylation","termid":"GO:0006427"},{"relation_name":"is_a","term_name":"tRNA aminoacylation for mitochondrial protein translation","termid":"GO:0070127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"part_of","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0140053","GO:0008150","GO:0006399","GO:0010467"],"is_obsolete":false,"name":"mitochondrial histidyl-tRNA aminoacylation","termid":"GO:0070151"}


id: GO:0034283
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 9-alpha-copalyl diphosphate = stemod-13(17)-ene + diphosphate.","definition_xrefs":["RHEA:25556"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"syn-stemod-13(17)-ene synthase activity","secondary_identifiers":["EC:4.2.3.34","MetaCyc:RXN-9291","KEGG_REACTION:R09116"],"synonyms":[{"name":"9alpha-copalyl-diphosphate diphosphate-lyase [stemod-13(17)-ene-forming] activity","type":"exact"},{"name":"exo-stemodene synthase activity","type":"exact"},{"name":"stemod-13(17)-ene synthase activity","type":"exact"},{"name":"stemodene synthase activity","type":"exact"},{"name":"syn-stemodene synthase activity","type":"exact"}],"termid":"GO:0034283"}


id: MONDO:0850199
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary immunodeficiency disease that results from defeciency in the number or function of CD56+CD3− NK cell in peripheral blood.","definition_xrefs":["DOID:0080709"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn error of immunity","termid":"MONDO:0003778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"NK cell deficiency","secondary_identifiers":["MEDGEN:1644714","UMLS:C4693357"],"termid":"MONDO:0850199","xrefs":{"Monarch":{"xref_id":"0850199"}}}


id: PBO:0064900
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 2 regulatory subunit B'epsilon","termid":"PBO:0064900"}


id: MONDO:0007681
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any multinodular goiter in which the cause of the disease is a mutation in the DICER1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multinodular goiter","termid":"MONDO:0000334"},{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"},{"relation_name":"is_a","term_name":"DICER1-related tumor predisposition","termid":"MONDO:0100216"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"goiter, multinodular 1, with or without Sertoli-Leydig cell tumors","secondary_identifiers":["ICD9:240.0","MESH:C562732","SCTID:267369002","GARD:17278","MEDGEN:86230","Orphanet:276399","OMIM:138800","UMLS:C0302859"],"synonyms":[{"name":"FMNG","type":"exact"},{"name":"MNG1","type":"exact"},{"name":"euthyroid goiter","type":"broad"},{"name":"euthyroid goitre","type":"broad"},{"name":"familial MNG","type":"exact"},{"name":"goiter, multinodular 1, with or without Sertoli-Leydig cell tumors","type":"exact"},{"name":"goiter, nontoxic, with Intrathyroidal calcification","type":"exact"},{"name":"multinodular goiter, adolescent","type":"exact"},{"name":"simple goiter","type":"broad"},{"name":"simple goitre","type":"broad"}],"termid":"MONDO:0007681","xrefs":{"Monarch":{"xref_id":"0007681"}}}


id: GO:0106183
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of carbohydrates and their derivatives.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activity acting on carbohydrates and their derivatives. (obsolete GO:0106183)","termid":"GO:0106183"}


id: MONDO:1012861
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any progressive retinal atrophy that occurs in dogs due to a mutation in the IFT122 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"progressive retinal atrophy, dog","termid":"MONDO:1012226"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"progressive retinal atrophy, IFT122-related, dog","secondary_identifiers":["OMIA:002320-9615"],"termid":"MONDO:1012861","xrefs":{"Monarch":{"xref_id":"1012861"}}}


id: GO:0085026
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex, symbiont-induced host-derived organelle that is comprised of multiple protein and lipid domains.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell cytoplasm part","termid":"GO:0033655"},{"relation_name":"is_a","term_name":"extracellular membraneless organelle","termid":"GO:0043264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005575","GO:0005576"],"is_obsolete":false,"name":"tubovesicular membrane network","synonyms":[{"name":"TVM network","type":"exact"},{"name":"TVN","type":"exact"}],"termid":"GO:0085026"}


id: MONDO:0032735
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cataract","termid":"MONDO:0005129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cataract 48","secondary_identifiers":["DOID:0070354","MEDGEN:1684457","OMIM:618415","UMLS:C5193082","GARD:16350"],"synonyms":[{"name":"CATARACT 48","type":"related"},{"name":"CTRCT48","type":"related"}],"termid":"MONDO:0032735","xrefs":{"Monarch":{"xref_id":"0032735"}}}


id: PBO:0046573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 15","termid":"PBO:0046573"}


id: FYPO:0008034
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of the serine residue at position 7 within one or more copies of the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:32282918"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during vegetative growth","termid":"FYPO:0000776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal phosphorylation of RNA polymerase II C-terminal domain serine 7 residues during vegetative growth","termid":"FYPO:0008034"}


id: PBO:0117084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POU2F3 antisense RNA 1","termid":"PBO:0117084"}


id: FYPO:0007527
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the cell tip is increased when the cell is subject to nitrogen starvation.","definition_xrefs":["PMID:27746023","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell tip","termid":"FYPO:0005987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased protein localization to cell tip during nitrogen starvation","synonyms":[{"name":"increased protein localization to cell tip during nitrogen depletion","type":"exact"},{"name":"increased protein localization to cell tip during nitrogen deprivation","type":"exact"}],"termid":"FYPO:0007527"}


id: MONDO:0003014
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inflammation of the mucous membrane lining the nose, usually associated with nasal discharge.","definition_xrefs":["NCIT:C34986"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nasal cavity disorder","termid":"MONDO:0002232"},{"relation_name":"is_a","term_name":"mucositis","termid":"MONDO:0020579"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhinitis","secondary_identifiers":["MESH:D012220","SCTID:70076002","DOID:4483","UMLS:C0035455","ICD10CM:J30","MEDGEN:19782","EFO:0008521"],"synonyms":[{"name":"inflammation of nasal cavity mucosa","type":"exact"},{"name":"nasal cavity mucosa inflammation","type":"exact"},{"name":"runny nose","type":"related"}],"termid":"MONDO:0003014","xrefs":{"Monarch":{"xref_id":"0003014"}}}


id: GO:0060842
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized endothelial cell acquires specialized features of an arterial endothelial cell, a thin flattened cell that lines the inside surfaces of arteries.","definition_xrefs":["GOC:tb","GOC:sdb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"blood vessel endothelial cell differentiation","termid":"GO:0060837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"arterial endothelial cell differentiation","termid":"GO:0060842"}


id: GO:1990095
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals.","definition_xrefs":["PMID:16166371","GOC:kmv"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter in response to reactive oxygen species (obsolete GO:1990095)","termid":"GO:1990095"}


id: PBO:0004507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol-polyphosphate 5-phosphatase (synaptojanin homolog 1)","termid":"PBO:0004507"}


id: GO:0008248
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. An activity involved in the removal of an intron from a pre-mRNA.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete pre-mRNA splicing factor activity (obsolete GO:0008248)","synonyms":[{"name":"pre-mRNA splicing factor activity","type":"exact"}],"termid":"GO:0008248"}


id: PBO:0089822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ndc80 complex subunit Spc24","termid":"PBO:0089822"}


id: GO:1990074
data:
  {"annotated_genes":["SJAG_04118","SJAG_02383","SJAG_02370","SJAG_03876"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[67856,90250,116839],"is_not":false,"summary":null,"term":"GO:1990074"},{"annotations":[91149],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0036450"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a messenger RNA (mRNA) molecule, initiated by the enzymatic addition of a sequence of uridylyl residues (polyuridylation) at the 3' end of the target mRNA.","definition_xrefs":["PMID:23503588","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA catabolic process","termid":"GO:0006402"},{"relation_name":"is_a","term_name":"modification-dependent macromolecule catabolic process","termid":"GO:0043632"},{"relation_name":"is_a","term_name":"mRNA destabilization","termid":"GO:0061157"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02370":null,"SJAG_02383":null,"SJAG_03876":null,"SJAG_04118":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0010467","GO:0016071","GO:0008150"],"is_obsolete":false,"name":"polyuridylation-dependent mRNA catabolic process","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null},"termid":"GO:1990074","terms_by_termid":{"GO:0036450":null,"GO:1990074":null}}


id: PBO:0089180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane magnesium ion transmembrane transporter Mrs2","termid":"PBO:0089180"}


id: PBO:0066055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAP2C pseudogene 1","termid":"PBO:0066055"}


id: GO:1900610
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of F-9775A.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound catabolic process","termid":"GO:0019336"},{"relation_name":"is_a","term_name":"polyketide catabolic process","termid":"GO:0030640"},{"relation_name":"is_a","term_name":"F-9775A metabolic process","termid":"GO:1900609"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"F-9775A catabolic process","synonyms":[{"name":"F-9775A breakdown","type":"exact"},{"name":"F-9775A catabolism","type":"exact"},{"name":"F-9775A degradation","type":"exact"}],"termid":"GO:1900610"}


id: GO:1905246
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of aspartic-type peptidase activity.","definition_xrefs":["PMID:21745575","GO_REF:0000059","GOC:TermGenie","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of aspartic-type peptidase activity (obsolete GO:1905246)","synonyms":[{"name":"down regulation of aspartic-type peptidase activity","type":"exact"},{"name":"down-regulation of aspartic-type peptidase activity","type":"exact"},{"name":"downregulation of aspartic-type peptidase activity","type":"exact"},{"name":"inhibition of aspartic-type peptidase activity","type":"narrow"},{"name":"pepsin inhibitor","type":"related"}],"termid":"GO:1905246"}


id: GO:1903231
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A post-transcriptional repressor activity that acts by base-pairing with an mRNA to prevent gene expression. The binding can result in targeting the mRNA for degradation or interfering with mRNA translation resulting in post-transcriptional gene silencing.","definition_xrefs":["GOC:BHF","PMID:20533884","GOC:BHF_miRNA","GOC:ha","GOC:vw","PMID:18197166"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequence-specific mRNA binding","termid":"GO:1990825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003723"],"is_obsolete":false,"name":"mRNA base-pairing post-transcriptional repressor activity","secondary_identifiers":["GO:0150100"],"synonyms":[{"name":"mRNA base-pairing posttranscriptional repressor activity","type":"exact"},{"name":"mRNA base-pairing translational repressor activity","type":"narrow"},{"name":"mRNA binding involved in PTGS","type":"related"},{"name":"mRNA binding involved in cosuppression","type":"related"},{"name":"mRNA binding involved in post-transcriptional gene silencing","type":"exact"},{"name":"mRNA binding involved in posttranscriptional gene silencing","type":"related"},{"name":"mRNA binding involved in quelling","type":"exact"},{"name":"mRNA binding translation repressor activity","type":"related"},{"name":"translational inhibitor activity via mRNA base-pairing","type":"narrow"}],"termid":"GO:1903231"}


id: PBO:0111891
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-CHY","termid":"PBO:0111891"}


id: PBO:0084914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitotic spindle midzone-localized microtubule bundling protein; microtubule-associated protein (MAP) family member; required for spindle elongation and stabilization; undergoes cell cycle-regulated degradation by anaphase promoting complex; potential Cdc28p substrate; relative distribution to microtubules decreases upon DNA replication stress","termid":"PBO:0084914"}


id: FYPO:0003782
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A localization phenotype observed in the vegetative growth phase of the life cycle in which nuclear pore localization is normal (i.e. indistinguishable from wild type), resulting in a normal spatial arrangement of nuclear pores within the nuclear envelope, during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal nuclear pore localization","termid":"FYPO:0000771"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001312","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal nuclear pore localization during mitotic interphase","synonyms":[{"name":"normal NPC localization during mitotic interphase","type":"exact"},{"name":"normal nuclear pore complex localization during mitotic interphase","type":"exact"},{"name":"normal nuclear pore distribution during mitotic interphase","type":"exact"},{"name":"normal nuclear pore localisation during mitotic interphase","type":"exact"},{"name":"normal nuclear pore localization during interphase during mitotic cell cycle","type":"related"},{"name":"normal nuclear pore localization during interphase during vegetative growth","type":"exact"},{"name":"normal nuclear pore localization during interphase of mitotic cell cycle","type":"exact"}],"termid":"FYPO:0003782"}


id: PBO:0055230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2656","termid":"PBO:0055230"}


id: PBO:0066862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 162","termid":"PBO:0066862"}


id: GO:0015319
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + phosphate(out) = Na+(in) + phosphate(in).","definition_xrefs":["TC:2.A.1.14.6"],"gene_count":0,"genotype_count":0,"name":"obsolete sodium:inorganic phosphate symporter activity (obsolete GO:0015319)","synonyms":[{"name":"sodium:phosphate symporter activity","type":"exact"}],"termid":"GO:0015319"}


id: GO:0060869
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by an extracellular ligand binding to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, which contributes to the process of floral organ abscission.","definition_xrefs":["GOC:signaling","GOC:sdb_2009","GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete transmembrane receptor protein serine/threonine kinase signaling pathway involved in floral organ abscission (obsolete GO:0060869)","synonyms":[{"name":"transmembrane receptor protein serine/threonine kinase signalling pathway involved in floral organ abscission","type":"exact"}],"termid":"GO:0060869"}


id: PBO:0108929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase 9, His-X-His N1-histidine","termid":"PBO:0108929"}


id: GO:0010077
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism retains a population of inflorescence meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of meristem identity","termid":"GO:0010074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of inflorescence meristem identity","termid":"GO:0010077"}


id: PATO:0001035
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the bearer's rate of change of momentum.","definition_xrefs":["thesaurus.maths:thesaurus.maths"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"force","synonyms":[{"name":"force amplitude","type":"exact"}],"termid":"PATO:0001035"}


id: PBO:0089203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GID complex subunit, Ran GTPase binding protein Gid1","termid":"PBO:0089203"}


id: MONDO:0000115
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare genetic brain malformation characterized by displacement of the brain stem and cerebellum through the foramen magnum. It may result in hydrocephalus.","definition_xrefs":["NCIT:C84570"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chiari malformation","secondary_identifiers":["MESH:D001139","SCTID:253184003","UMLS:C0003803","MEDGEN:2065"],"synonyms":[{"name":"(Arnold) Chiari malformation","type":"exact"},{"name":"Arnold-Chiari malformation","type":"exact"},{"name":"Chiari malformation","type":"exact"}],"termid":"MONDO:0000115","xrefs":{"Monarch":{"xref_id":"0000115"}}}


id: PBO:0026922
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H4_acetylation","termid":"PBO:0026922"}


id: PBO:0068699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 80, pseudogene","termid":"PBO:0068699"}


id: MONDO:0009012
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Malignant hyperthermia-arthrogryposis-torticollisis an extremely rare arthrogryposis syndrome, described in only two pairs of siblings from two unrelated families to date, and characterized by the association of arthrogryposis, congenital torticollis, dysmorphic facial features (i.e. asymmetry of the face, myopathic facial movements, ptosis, posteriorly rotated ears, cleft palate), progressive scoliosis and episodes of malignant hyperthermia. There have been no further descriptions in the literature since 1988.","definition_xrefs":["Orphanet:2215"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete syndrome or malformation associated with head and neck malformations (obsolete MONDO:0015501)","termid":"MONDO:0015501"},{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"arthrogryposis multiplex congenita","termid":"MONDO:0015168"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"multiple pterygium-malignant hyperthermia syndrome","secondary_identifiers":["MEDGEN:347490","UMLS:C1857576","MESH:C565679","OMIM:217150","GARD:3361"],"synonyms":[{"name":"contractures, congenital, torticollis, and malignant hyperthermia","type":"related"},{"name":"froster-Iskenius-Waterson syndrome","type":"related"},{"name":"froster-Iskenius-Waterson-Hall syndrome","type":"exact"},{"name":"malignant hyperthermia - arthrogryposis - torticollis","type":"related"},{"name":"malignant hyperthermia arthrogryposis torticollis","type":"related"},{"name":"malignant hyperthermia-arthrogryposis-torticollis syndrome","type":"exact"}],"termid":"MONDO:0009012","xrefs":{"Monarch":{"xref_id":"0009012"}}}


id: PomGeneEx:0000022
data:
  {"annotation_feature_type":"gene","cv_name":"PomGeneExProt","definition":"A gene expression qualifier that indicates that a protein is not detectable under a given set of conditions or at an indicated time.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"absent","termid":"PomGeneEx:0000006"},{"relation_name":"is_a","term_name":"protein expression level","termid":"PomGeneEx:0000010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein absent","synonyms":[{"name":"protein expression absent","type":"exact"}],"termid":"PomGeneEx:0000022"}


id: PBO:0113203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Middle sporulation-specific mitogen-activated protein kinase (MAPK); required for prospore membrane development and the production of outer spore wall layers; promotes deposition of the glucan layer of the spore wall by regulating the localization of Gsc2p to sites of spore wall assembly in postmeiotic cells; activated by Cak1p-mediated phosphorylation of threonine (T207) in the activation loop during meiosis I followed by Ssp2p-promoted autophosphorylation of tyrosine (T209) during meiosis II","termid":"PBO:0113203"}


id: GO:0098781
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transcription of non (protein) coding RNA from a DNA template.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete ncRNA transcription (obsolete GO:0098781)","termid":"GO:0098781"}


id: PBO:0068095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 402","termid":"PBO:0068095"}


id: FYPO:0002596
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H2A phosphorylation occurs to a greater extent than normal. All histone H2A phosphorylation may be affected, or phosphorylation of specific sites on histone H2A may be increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone phosphorylation during vegetative growth","termid":"FYPO:0002591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0002494","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased histone H2A phosphorylation during vegetative growth","synonyms":[{"name":"increased histone H2A phosphorylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002596"}


id: MONDO:0013170
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A autosomal recessive cutis laxa type I that has material basis in homozygous or compound heterozygous mutation in the LTBP4 gene on chromosome 19q13","definition_xrefs":["DOID:0070139"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"inherited cutis laxa","termid":"MONDO:0100237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"cutis laxa with severe pulmonary, gastrointestinal and urinary anomalies","secondary_identifiers":["GARD:17140","MESH:C567716","MEDGEN:442566","PMID:19836010","icd11.foundation:424903269","Orphanet:221145","OMIM:613177","UMLS:C2750804"],"synonyms":[{"name":"ARCL1C","type":"exact"},{"name":"Urban-Rifkin-Davis syndrome","type":"exact"},{"name":"autosomal recessive cutis laxa type 1C","type":"exact"},{"name":"autosomal recessive cutis laxa type IC","type":"related"},{"name":"cutis laxa with Severe pulmonary, gastrointestinal, and urinary abnormalities","type":"related"},{"name":"cutis laxa, autosomal recessive, type 1C","type":"related"},{"name":"cutis laxa, autosomal recessive, type IC","type":"related"}],"termid":"MONDO:0013170","xrefs":{"Monarch":{"xref_id":"0013170"}}}


id: MONDO:0014891
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any familial juvenile hyperuricemic nephropathy in which the cause of the disease is a mutation in the SEC61A1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial juvenile hyperuricemic nephropathy","termid":"MONDO:0000608"},{"relation_name":"is_a","term_name":"SEC61A1 deficiency","termid":"MONDO:0100337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"hyperuricemic nephropathy, familial juvenile type 4","secondary_identifiers":["OMIM:617056","UMLS:C4310741","MEDGEN:934708"],"synonyms":[{"name":"ADTKD-SEC61A1","type":"exact"},{"name":"HNFJ4","type":"exact"},{"name":"SEC61A1 familial juvenile hyperuricemic nephropathy","type":"exact"},{"name":"SEC61A1-related autosomal dominant tubulointerstitial kidney disease","type":"exact"},{"name":"familial juvenile hyperuricemic nephropathy caused by mutation in SEC61A1","type":"exact"},{"name":"hyperuricemic NEPHROPATHY, familial juvenile, 4","type":"related"},{"name":"hyperuricemic nephropathy, familial juvenile, 4","type":"exact"},{"name":"hyperuricemic nephropathy, familial juvenile, type 4","type":"exact"},{"name":"tubulointerstitial kidney disease, autosomal dominant, 5","type":"exact"}],"termid":"MONDO:0014891","xrefs":{"Monarch":{"xref_id":"0014891"}}}


id: PBO:0054884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2298","termid":"PBO:0054884"}


id: PBO:0080716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WRN helicase interacting protein 1","termid":"PBO:0080716"}


id: FYPO:0004303
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which a phosphatase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal phosphatase activity","termid":"FYPO:0004302"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0001985","FYPO:0000652","FYPO:0000661","FYPO:0000707"],"is_obsolete":false,"name":"abolished phosphatase activity","synonyms":[{"name":"phosphatase activity abolished","type":"exact"}],"termid":"FYPO:0004303"}


id: PBO:0043678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coronin 2B","termid":"PBO:0043678"}


id: GO:0010570
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the process in which a multicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape.","definition_xrefs":["GOC:tb","GOC:dph","GOC:jp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of growth","termid":"GO:0040008"},{"relation_name":"regulates","term_name":"filamentous growth","termid":"GO:0030447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of filamentous growth","termid":"GO:0010570"}


id: GO:0055041
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cyclopentanol + NAD+ = cyclopentanone + H+ + NADH.","definition_xrefs":["RHEA:11728","EC:1.1.1.163"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"cyclopentanol dehydrogenase activity","secondary_identifiers":["MetaCyc:CYCLOPENTANOL-DEHYDROGENASE-RXN","KEGG_REACTION:R02553"],"synonyms":[{"name":"cyclopentanol:NAD+ oxidoreductase activity","type":"related"},{"name":"cyclopentanol:NADP+ oxidoreductase activity","type":"related"}],"termid":"GO:0055041"}


id: MONDO:0004648
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A degenerative vascular disorder affecting the brain. It is caused by the blockage of the blood supply to the brain. It is manifested with decline of memory and cognitive functions.","definition_xrefs":["NCIT:C34525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dementia","termid":"MONDO:0001627"},{"relation_name":"is_a","term_name":"cerebrovascular disorder","termid":"MONDO:0011057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0002039"],"is_obsolete":false,"name":"vascular dementia","secondary_identifiers":["ICD9:290.4","SCTID:429998004","UMLS:C0011269","DOID:8725","EFO:0004718","MEDGEN:41447","MESH:D015140"],"synonyms":[{"name":"multi infarct dementia","type":"narrow"},{"name":"multifocal dementia","type":"related"},{"name":"vascular dementia","type":"exact"}],"termid":"MONDO:0004648","xrefs":{"Monarch":{"xref_id":"0004648"}}}


id: MONDO:0030854
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Ehlers-Danlos/osteogenesis imperfecta syndrome","termid":"MONDO:0016470"},{"relation_name":"is_a","term_name":"COL1A1-related Ehlers-Danlos syndrome","termid":"MONDO:0100599"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"combined osteogenesis imperfecta and Ehlers-Danlos syndrome 1","secondary_identifiers":["OMIM:619115","UMLS:C5436842","GARD:18316","MEDGEN:1763836"],"synonyms":[{"name":"OIEDS Syndrome 1","type":"exact"},{"name":"OIEDS1","type":"exact"},{"name":"combined osteogenesis imperfecta and Ehlers-Danlos syndrome 1","type":"exact"}],"termid":"MONDO:0030854","xrefs":{"Monarch":{"xref_id":"0030854"}}}


id: GO:0003414
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the structures of a chondrocyte that will contribute to bone development are generated and organized.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chondrocyte morphogenesis","termid":"GO:0090171"},{"relation_name":"part_of","term_name":"chondrocyte development involved in endochondral bone morphogenesis","termid":"GO:0003433"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chondrocyte morphogenesis involved in endochondral bone morphogenesis","termid":"GO:0003414"}


id: PBO:0014571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfate transmembrane transporter (predicted)","termid":"PBO:0014571"}


id: FYPO:0002612
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H2A phosphorylation is normal at subtelomeric regions. All histone H2A phosphorylation may be assayed, or phosphorylation of specific sites on histone H2A may be measured.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone H2A phosphorylation during vegetative growth","termid":"FYPO:0002601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal histone H2A phosphorylation at subtelomeric heterochromatin during vegetative growth","synonyms":[{"name":"normal histone H2A phosphorylation at subtelomere during vegetative growth","type":"exact"},{"name":"normal histone H2A phosphorylation at subtelomeric heterochromatin during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002612"}


id: GO:0060073
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulation of body fluids process in which parasympathetic nerves stimulate the bladder wall muscle to contract and expel urine from the body.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal system process","termid":"GO:0003014"},{"relation_name":"is_a","term_name":"excretion","termid":"GO:0007588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"micturition","secondary_identifiers":["Wikipedia:Urination"],"synonyms":[{"name":"urination","type":"exact"},{"name":"urine voiding","type":"exact"}],"termid":"GO:0060073"}


id: PBO:0091262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER alcohol acetyltransferase involved in intermembrane phospholipid transfer","termid":"PBO:0091262"}


id: MONDO:0003643
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cavernous hemangioma characterized by the presence of hylanized vascular channels and is often associated with the presence of calcifications, fibrosis, and hemorrhage.","definition_xrefs":["NCIT:C27777"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cavernous hemangioma","termid":"MONDO:0003155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"giant hemangioma","secondary_identifiers":["DOID:5774","MEDGEN:272670","UMLS:C1333817"],"synonyms":[{"name":"giant hemangioma","type":"exact"}],"termid":"MONDO:0003643","xrefs":{"Monarch":{"xref_id":"0003643"}}}


id: _global:transcribed_from
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"X is transcribed_from Y if X is synthesized from template Y.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcribed_from","termid":"_global:transcribed_from"}


id: PBO:0067071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 100, pseudogene","termid":"PBO:0067071"}


id: MONDO:0006532
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cholesteatoma (disease) that involves the external ear.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"external ear disorder","termid":"MONDO:0002776"},{"relation_name":"is_a","term_name":"cholesteatoma","termid":"MONDO:0006530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"cholesteatoma of external ear","secondary_identifiers":["EFO:1000677","ICD9:380.21","ICD10CM:H60.4","MEDGEN:509952","SCTID:35247001","UMLS:C0155398","DOID:9462"],"synonyms":[{"name":"cholesteatoma (disease) of external ear","type":"exact"},{"name":"external canal cholesteatoma","type":"exact"},{"name":"external ear cholesteatoma (disease)","type":"exact"}],"termid":"MONDO:0006532","xrefs":{"Monarch":{"xref_id":"0006532"}}}


id: FYECO:0000035
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which copper ions were added to the assay buffer in excess compared to standard assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ ions","termid":"FYECO:0000030"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ Cu ions","synonyms":[{"name":"copper ions added","type":"exact"}],"termid":"FYECO:0000035"}


id: PBO:0016938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sSchizosaccharomyces specific protein","termid":"PBO:0016938"}


id: GO:0048532
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the configuration of the constituent parts of an anatomical structure. This process pertains to the physical shaping of a rudimentary structure. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process","termid":"GO:0032502"},{"relation_name":"part_of","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anatomical structure arrangement","synonyms":[{"name":"anatomical structure organization","type":"broad"},{"name":"anatomical structure structural organization","type":"exact"},{"name":"organization of an anatomical structure","type":"exact"},{"name":"structural organization","type":"exact"}],"termid":"GO:0048532"}


id: FYPO:0005530
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at the IRC1L boundary element is abolished.","definition_xrefs":["PomBase:mah","PMID:25972440"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to chromatin during vegetative growth","termid":"FYPO:0000452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to chromatin at boundary element IRC1L","synonyms":[{"name":"abolished protein localisation to chromatin at boundary element IRC1L during vegetative growth","type":"exact"},{"name":"abolished protein localization to centromeric boundary element IRC1L","type":"exact"},{"name":"abolished protein localization to chromatin at boundary element IRC1L during mitotic cell cycle","type":"related"},{"name":"protein localization to chromatin at boundary element IRC1L during vegetative growth abolished","type":"exact"}],"termid":"FYPO:0005530"}


id: PBO:0067896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 198","termid":"PBO:0067896"}


id: PBO:0058433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4803","termid":"PBO:0058433"}


id: MONDO:0005657
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Aspergillosis is an infection, growth, or allergic response caused by the Aspergillus fungus. There are several different kinds of aspergillosis. One kind is allergic bronchopulmonary aspergillosis (also called ABPA), a condition where the fungus causes allergic respiratory symptoms similar to asthma, such as wheezing and coughing, but does not actually invade and destroy tissue. Another kind of aspergillosis is invasive aspergillosis. This infection usually affects people with weakened immune systems due to cancer, AIDS, leukemia, organ transplantation, chemotherapy, or other conditions or events that reduce the number of normal white blood cells. In this condition, the fungus invades and damages tissues in the body. Invasive aspergillosis most commonly affects the lungs, but can also cause infection in many other organs and can spread throughout the body (commonly affecting the kidneys and brain). Aspergilloma, a growth (fungus ball) that develops in an area of previous lung disease such as tuberculosis or lung abscess, is a third kind of aspergillosis. This type of aspergillosis is composed of a tangled mass of fungus fibers, blood clots, and white blood cells. The fungus ball gradually enlarges, destroying lung tissue in the process, but usually does not spread to other areas.","direct_ancestors":[{"relation_name":"is_a","term_name":"opportunistic mycosis","termid":"MONDO:0002312"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspergillosis","secondary_identifiers":["ICD9:117.3","SCTID:65553006","DOID:13564","EFO:0007157","ICD10CM:B44","MESH:D001228","UMLS:C0004030","NCIT:C2886","Orphanet:1163","GARD:5856","MEDGEN:13939","icd11.foundation:1913468488","CSP:1988-4002","MedDRA:10003488","NORD:814"],"synonyms":[{"name":"infection due to Aspergillus","type":"exact"}],"termid":"MONDO:0005657","xrefs":{"Monarch":{"xref_id":"0005657"}}}


id: GO:0010745
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of macrophage derived foam cell differentiation. Macrophage derived foam cell differentiation is the process in which a macrophage acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions.","definition_xrefs":["GOC:BHF","GOC:tb","GOC:dph","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of macrophage derived foam cell differentiation","termid":"GO:0010743"},{"relation_name":"is_a","term_name":"negative regulation of cell differentiation","termid":"GO:0045596"},{"relation_name":"negatively_regulates","term_name":"macrophage derived foam cell differentiation","termid":"GO:0010742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of macrophage derived foam cell differentiation","termid":"GO:0010745"}


id: PBO:0065383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pregnancy specific beta-1-glycoprotein 10, pseudogene","termid":"PBO:0065383"}


id: MONDO:0006228
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A variant of gastric adenocarcinoma with exophytic growth and elongated finger-like processes lined by cylindrical or cuboidal cells supported by fibrovascular connective tissue cores.","definition_xrefs":["NCIT:C5472"],"direct_ancestors":[{"relation_name":"is_a","term_name":"papillary adenocarcinoma","termid":"MONDO:0002512"},{"relation_name":"is_a","term_name":"gastric adenocarcinoma","termid":"MONDO:0005036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"gastric papillary adenocarcinoma","secondary_identifiers":["DOID:5593","MEDGEN:232550","ONCOTREE:PSTAD","UMLS:C1333785","EFO:1000276"],"synonyms":[{"name":"gastric papillary adenocarcinoma","type":"exact"},{"name":"papillary adenocarcinoma of stomach","type":"exact"},{"name":"papillary adenocarcinoma of the stomach","type":"exact"},{"name":"papillary stomach adenocarcinoma","type":"related"},{"name":"stomach papillary adenocarcinoma","type":"exact"}],"termid":"MONDO:0006228","xrefs":{"Monarch":{"xref_id":"0006228"}}}


id: GO:0060385
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The neurite development process that generates a long process of a neuron, as it invades a target tissue.","definition_xrefs":["GOC:dph","GOC:sart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axonogenesis","termid":"GO:0007409"},{"relation_name":"part_of","term_name":"innervation","termid":"GO:0060384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"axonogenesis involved in innervation","termid":"GO:0060385"}


id: PR:Q9Y7J0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1778.03c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7J0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH pyrophosphatase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1778.03c","synonyms":[{"name":"Spom972h-SPBC1778.03c","type":"exact"}],"termid":"PR:Q9Y7J0"}


id: PBO:0002906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S proteasome regulatory particle assembly protein (predicted)","termid":"PBO:0002906"}


id: GO:0033921
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the random hydrolysis of (1->3)-alpha-D-galactosidic linkages in Aerobacter aerogenes capsular polysaccharide.","definition_xrefs":["EC:3.2.1.87"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactosidase activity","termid":"GO:0015925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0016798","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"capsular-polysaccharide endo-1,3-alpha-galactosidase activity","secondary_identifiers":["MetaCyc:3.2.1.87-RXN"],"synonyms":[{"name":"aerobacter-capsular-polysaccharide galactohydrolase activity","type":"related"},{"name":"capsular polysaccharide galactohydrolase activity","type":"related"},{"name":"polysaccharide depolymerase activity","type":"related"}],"termid":"GO:0033921"}


id: GO:0035368
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a selenocysteine insertion sequence (SECIS), a regulatory sequence within mRNA which directs incorporation of a selenocysteine at a stop codon (UGA) during translation.","definition_xrefs":["PMID:10760958","GOC:imk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA binding","termid":"GO:0003729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003723","GO:0003674"],"is_obsolete":false,"name":"selenocysteine insertion sequence binding","synonyms":[{"name":"SECIS binding","type":"exact"}],"termid":"GO:0035368"}


id: GO:0062132
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of L-glutamine biosynthesis.","definition_xrefs":["PMID:19755423","GOC:ha"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glutamine family amino acid metabolic process","termid":"GO:0000820"},{"relation_name":"is_a","term_name":"regulation of amino acid biosynthetic process","termid":"GO:2000282"},{"relation_name":"regulates","term_name":"L-glutamine biosynthetic process","termid":"GO:1901704"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"regulation of L-glutamine biosynthetic process","termid":"GO:0062132"}


id: GO:0006963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of antibacterial peptide biosynthesis.","definition_xrefs":["GOC:mah","PMID:10973475"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of antibacterial peptide production","termid":"GO:0002803"},{"relation_name":"is_a","term_name":"positive regulation of antimicrobial peptide biosynthetic process","termid":"GO:0002807"},{"relation_name":"is_a","term_name":"regulation of antibacterial peptide biosynthetic process","termid":"GO:0002808"},{"relation_name":"positively_regulates","term_name":"antibacterial peptide biosynthetic process","termid":"GO:0002780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of antibacterial peptide biosynthetic process","synonyms":[{"name":"activation of antibacterial peptide biosynthetic process","type":"narrow"},{"name":"antibacterial peptide induction","type":"exact"},{"name":"antibacterial polypeptide induction","type":"exact"},{"name":"stimulation of antibacterial peptide biosynthetic process","type":"narrow"},{"name":"up regulation of antibacterial peptide biosynthetic process","type":"exact"},{"name":"up-regulation of antibacterial peptide biosynthetic process","type":"exact"},{"name":"upregulation of antibacterial peptide biosynthetic process","type":"exact"}],"termid":"GO:0006963"}


id: PBO:0047910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, folic acid type, rare, fra(9)(q32)","termid":"PBO:0047910"}


id: GO:0042819
data:
  {"annotated_genes":["SJAG_01383","SJAG_01881","SJAG_00283","SJAG_00691","SJAG_00252","SJAG_01543","SJAG_00707"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92293],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036001"},{"annotations":[80011,76999],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009443"},{"annotations":[113993],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042821"},{"annotations":[65182,77361],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042823"},{"annotations":[111407],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010144"},{"annotations":[77363,65180],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008615"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.","definition_xrefs":["PMID:30671974","GOC:jl","PMID:16157873"],"direct_ancestors":[{"relation_name":"is_a","term_name":"water-soluble vitamin biosynthetic process","termid":"GO:0042364"},{"relation_name":"is_a","term_name":"vitamin B6 metabolic process","termid":"GO:0042816"},{"relation_name":"is_a","term_name":"pyridine-containing compound biosynthetic process","termid":"GO:0072525"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00252":null,"SJAG_00283":null,"SJAG_00691":null,"SJAG_00707":null,"SJAG_01383":null,"SJAG_01543":null,"SJAG_01881":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006766","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"vitamin B6 biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"pyridoxine-5'-phosphate biosynthesis","type":"related"},{"name":"vitamin B6 anabolism","type":"exact"},{"name":"vitamin B6 biosynthesis","type":"exact"},{"name":"vitamin B6 formation","type":"exact"},{"name":"vitamin B6 synthesis","type":"exact"}],"termid":"GO:0042819","terms_by_termid":{"GO:0008615":null,"GO:0009443":null,"GO:0010144":null,"GO:0036001":null,"GO:0042821":null,"GO:0042823":null}}


id: PBO:0081692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 614","termid":"PBO:0081692"}


id: GO:0034130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to toll-like receptor 1.","definition_xrefs":["PMID:16551253","GOC:add","PMID:17328678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface pattern recognition receptor signaling pathway","termid":"GO:0002752"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"toll-like receptor 1 signaling pathway","synonyms":[{"name":"TLR1 signaling pathway","type":"exact"},{"name":"toll-like receptor 1 signalling pathway","type":"exact"}],"termid":"GO:0034130"}


id: MONDO:0012278
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"progressive supranuclear palsy","termid":"MONDO:0019037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"supranuclear palsy, progressive, 2","secondary_identifiers":["UMLS:C1836148","MESH:C563717","MEDGEN:324446","OMIM:609454","GARD:18344"],"synonyms":[{"name":"PSNP2","type":"exact"},{"name":"supranuclear palsy, progressive, 2","type":"exact"}],"termid":"MONDO:0012278","xrefs":{"Monarch":{"xref_id":"0012278"}}}


id: PBO:0091750
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"II:g.1960392_1960393insG","termid":"PBO:0091750"}


id: PBO:0003800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin binding methyltransferase (predicted)","termid":"PBO:0003800"}


id: GO:0075251
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process which specific outcome is the formation of an asexual, dikaryotic, often rusty-colored spore, produced in a structure called a uredinium; mostly found in the rust fungus.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asexual sporulation resulting in formation of a cellular spore","termid":"GO:0043936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"uredospore formation","synonyms":[{"name":"urediniospore formation","type":"exact"},{"name":"ureidospore formation","type":"exact"}],"termid":"GO:0075251"}


id: GO:0045821
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of glycolysis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glycolytic process","termid":"GO:0006110"},{"relation_name":"is_a","term_name":"positive regulation of purine nucleotide catabolic process","termid":"GO:0033123"},{"relation_name":"is_a","term_name":"positive regulation of carbohydrate metabolic process","termid":"GO:0045913"},{"relation_name":"is_a","term_name":"positive regulation of ATP metabolic process","termid":"GO:1903580"},{"relation_name":"positively_regulates","term_name":"glycolytic process","termid":"GO:0006096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"positively_regulates","termid":"GO:0006091"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"positively_regulates","termid":"GO:0005975"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0005975","GO:0008150","GO:0006091"],"is_obsolete":false,"name":"positive regulation of glycolytic process","synonyms":[{"name":"activation of glycolysis","type":"narrow"},{"name":"stimulation of glycolysis","type":"narrow"},{"name":"up regulation of glycolysis","type":"exact"},{"name":"up-regulation of glycolysis","type":"exact"},{"name":"upregulation of glycolysis","type":"exact"}],"termid":"GO:0045821"}


id: MONDO:0016846
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Distal 22q11.2 microduplication syndrome is a rare chromosomal anomaly syndrome, resulting from the partial duplication of the long arm of chromosome 22, with a highly variable phenotype principally characterized by developmental delay, intellectual disability, hypotonia, growth retardation, velopharyngeal insufficiency, mild craniofacial dysmorphism (microcephaly, tall/broad forehead, small downslating palpebral fissures, hooded eyelids, flat nasal bridge, low posterior hairline) and digital anomalies. Congenital heart malformations, visual and hearing impairment, urogenital abnormalities, behavourial problems and seizures have also been reported.","definition_xrefs":["Orphanet:261337"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 22q11.2 microduplication syndrome","termid":"MONDO:0012020"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"distal 22q11.2 microduplication syndrome","secondary_identifiers":["GARD:20780","SCTID:764524005","MEDGEN:1637660","UMLS:C4706942"],"synonyms":[{"name":"distal dup(22)(q11.2)","type":"exact"},{"name":"distal trisomy 22q11.2","type":"exact"}],"termid":"MONDO:0016846","xrefs":{"Monarch":{"xref_id":"0016846"}}}


id: GO:0048555
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The nucleus of the generative cell, a cell contained within the pollen grain that will divide to produce two haploid sperm cells.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus","termid":"GO:0005634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634"],"is_obsolete":false,"name":"generative cell nucleus","synonyms":[{"name":"male germ cell nucleus","type":"broad"},{"name":"sperm cell nucleus","type":"broad"}],"termid":"GO:0048555"}


id: PR:Q10162
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An 18S rRNA (guanine-N(7))-methyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01394"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"18S rRNA (guanine-N(7))-methyltransferase bud23 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC26A3.06","secondary_identifiers":["UniProtKB:Q10162"],"synonyms":[{"name":"Bud site selection protein 23 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-WBSCR22","type":"exact"}],"termid":"PR:Q10162"}


id: PBO:0059091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MORC family CW-type zinc finger 3","termid":"PBO:0059091"}


id: GO:0005876
data:
  {"annotated_genes":["SJAG_01775","SJAG_02336","SJAG_02045","SJAG_02286","SJAG_02509","SJAG_01297","SJAG_03073","SJAG_00918","SJAG_02624","SJAG_01837","SJAG_04003","SJAG_04841","SJAG_00655","SJAG_02761","SJAG_05220","SJAG_00845","SJAG_04387","SJAG_02695","SJAG_01330","SJAG_01224","SJAG_03540","SJAG_00773","SJAG_01613","SJAG_04745","SJAG_05266"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[63966,77584,78023,78681,89209,100039,103222],"is_not":false,"summary":null,"term":"GO:0005876"},{"annotations":[98713,106762,106975,111709,103538],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000235"},{"annotations":[87202],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990574"},{"annotations":[90850,63025,80618],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061673"},{"annotations":[96477],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1905721"},{"annotations":[107055],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990941"},{"annotations":[66702,100952,105864,99887],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990498"},{"annotations":[98724,98121,117757,107056],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990537"},{"annotations":[100955,94261],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005827"}]},"cv_name":"cellular_component","definition":"Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule","termid":"GO:0005874"},{"relation_name":"part_of","term_name":"spindle","termid":"GO:0005819"}],"gene_count":25,"genes_by_uniquename":{"SJAG_00655":null,"SJAG_00773":null,"SJAG_00845":null,"SJAG_00918":null,"SJAG_01224":null,"SJAG_01297":null,"SJAG_01330":null,"SJAG_01613":null,"SJAG_01775":null,"SJAG_01837":null,"SJAG_02045":null,"SJAG_02286":null,"SJAG_02336":null,"SJAG_02509":null,"SJAG_02624":null,"SJAG_02695":null,"SJAG_02761":null,"SJAG_03073":null,"SJAG_03540":null,"SJAG_04003":null,"SJAG_04387":null,"SJAG_04745":null,"SJAG_04841":null,"SJAG_05220":null,"SJAG_05266":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0015630","GO:0005575"],"is_obsolete":false,"name":"spindle microtubule","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"termid":"GO:0005876","terms_by_termid":{"GO:0000235":null,"GO:0005827":null,"GO:0005876":null,"GO:0061673":null,"GO:1905721":null,"GO:1990498":null,"GO:1990537":null,"GO:1990574":null,"GO:1990941":null}}


id: GO:0010267
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process leading to the generation of a functional trans-acting small interfering RNA (ta-siRNA). ta-siRNAs function like miRNAs to guide cleavage of target mRNAs.","definition_xrefs":["PMID:16129836","GOC:tb","PMID:20687832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"siRNA processing","termid":"GO:0030422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"ta-siRNA processing","synonyms":[{"name":"RNA interference, production of ta-siRNAs","type":"exact"},{"name":"primary ta-siRNA processing","type":"exact"},{"name":"production of small RNA involved in gene silencing by RNA","type":"narrow"},{"name":"production of ta-siRNAs involved in RNA interference","type":"exact"}],"termid":"GO:0010267"}


id: PBO:0031523
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_DNA-7-methylguanine_glycosylase_activity","termid":"PBO:0031523"}


id: MONDO:0859225
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with or without variable movement or behavioral abnormalities","secondary_identifiers":["MEDGEN:1802087","OMIM:619725","UMLS:C5676908"],"termid":"MONDO:0859225","xrefs":{"Monarch":{"xref_id":"0859225"}}}


id: PBO:0040264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy related 101","termid":"PBO:0040264"}


id: MONDO:0011908
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A myelodysplastic/myeloproliferative neoplasm of childhood that is characterized by proliferation principally of the granulocytic and monocytic lineages. Myelomonocytic proliferation is seen in the bone marrow and the blood. The leukemic cells may infiltrate any tissue, however liver, spleen, lymph nodes, skin, and respiratory tract are the most common sites of involvement. (WHO, 2001)","definition_xrefs":["NCIT:C9233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chronic myelomonocytic leukemia","termid":"MONDO:0020311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570","MONDO:0004992"],"is_obsolete":false,"name":"juvenile myelomonocytic leukemia","secondary_identifiers":["icd11.foundation:1786015803","DOID:0050458","EFO:1000309","SCTID:445227008","MEDGEN:138109","ONCOTREE:JMML","MESH:D054429","ICDO:9946/3","UMLS:C0349639","NANDO:2200014","NANDO:2200015","MedDRA:10023249","NORD:1316","GARD:9884","OMIM:607785","Orphanet:86834"],"synonyms":[{"name":"JCML","type":"exact"},{"name":"JMML","type":"exact"},{"name":"chronic myelomonocytic leukaemia","type":"broad"},{"name":"chronic myelomonocytic leukemia","type":"broad"},{"name":"juvenile chronic myelogenous leukaemia","type":"exact"},{"name":"juvenile chronic myelogenous leukemia","type":"exact"},{"name":"juvenile chronic myeloid leukaemia","type":"exact"},{"name":"juvenile chronic myeloid leukemia","type":"exact"},{"name":"juvenile chronic myelomonocytic leukaemia","type":"exact"},{"name":"juvenile chronic myelomonocytic leukemia","type":"exact"},{"name":"juvenile myelomonocytic leukemia","type":"exact"},{"name":"juvenile myelomonocytic leukemia, autosomal dominant, somatic mutation","type":"exact"},{"name":"leukemia, chronic myelomonocytic","type":"related"},{"name":"leukemia, juvenile myelomonocytic","type":"related"},{"name":"leukemia, juvenile myelomonocytic, autosomal dominant, somatic mutation","type":"exact"},{"name":"leukemia, juvenile myelomonocytic, somatic","type":"exact"}],"termid":"MONDO:0011908","xrefs":{"Monarch":{"xref_id":"0011908"}}}


id: PBO:0045691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein light chain roadblock-type 2","termid":"PBO:0045691"}


id: PBO:0089649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CIA machinery monothiol glutaredoxin Grx3","termid":"PBO:0089649"}


id: PBO:0071536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene","termid":"PBO:0071536"}


id: PBO:0113275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane arginine permease; transceptor that senses extracellular basic amino acids; negative regulator of biofilm formation; requires phosphatidyl ethanolamine (PE) for localization, exclusively associated with lipid rafts; mutation confers canavanine resistance; CAN1 has a paralog, ALP1, that arose from the whole genome duplication","termid":"PBO:0113275"}


id: PBO:0005731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-CCCH type zinc finger protein","termid":"PBO:0005731"}


id: GO:0030726
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of the intercellular bridges that connect the germ-line cells of a male cyst.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"germline ring canal formation","termid":"GO:0030725"},{"relation_name":"part_of","term_name":"spermatogenesis","termid":"GO:0007283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"male germline ring canal formation","synonyms":[{"name":"spermatocyte ring canal formation","type":"narrow"},{"name":"testicular ring canal formation","type":"narrow"}],"termid":"GO:0030726"}


id: PBO:0110198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial tRNA (guanine-N2-)-methyltransferase Trm1.1","termid":"PBO:0110198"}


id: PBO:0027370
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_cellular_amino_acid_level_during_vegetative_growth","termid":"PBO:0027370"}


id: PBO:0082611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Coenzyme Q (ubiquinone) binding protein; functions in the delivery of Q<sub>6</sub> to its proper location for electron transport during respiration; START domain protein with homologs in bacteria and eukaryotes; respiratory growth defect of the null mutant is functionally complemented by human COQ10A","termid":"PBO:0082611"}


id: GO:0033728
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: protochlorophyllide a + NADP+ = 3,8-divinyl protochlorophyllide a + NADPH + H+, and chlorophyllide a + NADP+ = 3,8-divinyl chlorophyllide a + NADPH + H+.","definition_xrefs":["EC:1.3.1.75"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity","synonyms":[{"name":"3,8-divinyl protochlorophyllide a 8-vinyl reductase activity","type":"exact"},{"name":"3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activit","type":"exact"},{"name":"4VCR","type":"related"},{"name":"[4-vinyl]chlorophyllide a reductase activity","type":"related"},{"name":"chlorophyllide-a:NADP+ oxidoreductase activity","type":"related"}],"termid":"GO:0033728"}


id: GO:0060956
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of an endocardial cell. An endocardial cell is a specialized endothelial cell that makes up the endocardium portion of the heart. The endocardium is the innermost layer of tissue of the heart, and lines the heart chambers.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac endothelial cell differentiation","termid":"GO:0003348"},{"relation_name":"part_of","term_name":"endocardium development","termid":"GO:0003157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endocardial cell differentiation","termid":"GO:0060956"}


id: GO:0005432
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in).","definition_xrefs":["GOC:curators","PMID:16371597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium ion transmembrane transporter activity","termid":"GO:0015081"},{"relation_name":"is_a","term_name":"calcium:monoatomic cation antiporter activity","termid":"GO:0015368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"calcium:sodium antiporter activity","secondary_identifiers":["Reactome:R-HSA-425661","Reactome:R-HSA-8949703","Reactome:R-HSA-8949688","RHEA:29255"],"synonyms":[{"name":"mitochondrial sodium/calcium ion exchange","type":"related"},{"name":"sodium/calcium exchanger","type":"exact"},{"name":"sodium:calcium exchange","type":"related"}],"termid":"GO:0005432"}


id: PBO:0075845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSU72 like 6","termid":"PBO:0075845"}


id: PR:Q10198
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A kinetochore protein NDC80 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03670","PRO:DNx","PANTHER:PTHR10643:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein ndc80 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC11C11.03","secondary_identifiers":["UniProtKB:Q10198"],"synonyms":[{"name":"NMS complex subunit ndc80 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-NDC80","type":"exact"}],"termid":"PR:Q10198"}


id: PBO:0120063
data:
  {"annotated_genes":["SJAG_04697"],"annotation_feature_type":"gene","cv_annotations":{"pombase_family_or_domain":[{"annotations":[56314],"is_not":false,"summary":null,"term":"PBO:0120063"}]},"cv_name":"pombase_family_or_domain","gene_count":1,"genes_by_uniquename":{"SJAG_04697":null},"genotype_count":0,"is_obsolete":false,"name":"warning frameshifted","termid":"PBO:0120063","terms_by_termid":{"PBO:0120063":null}}


id: PBO:0041116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brain specific homeobox","termid":"PBO:0041116"}


id: PBO:0085531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S29 and bacterial S14; RPS29B has a paralog, RPS29A, that arose from the whole genome duplication","termid":"PBO:0085531"}


id: MONDO:0019249
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of autosomal recessive or X-linked inherited lysosomal storage disorders affecting the metabolism of mucopolysaccharides, resulting in the accumulation of mucopolysaccharides in the body. Signs and symptoms include organomegaly, mental retardation, abnormal skeletal development, heart disorders, hearing loss, and central nervous system deficiencies.","definition_xrefs":["NCIT:C61259"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal storage disease","termid":"MONDO:0002561"},{"relation_name":"is_a","term_name":"developmental anomaly of metabolic origin","termid":"MONDO:0015327"},{"relation_name":"is_a","term_name":"inborn carbohydrate metabolic disorder","termid":"MONDO:0019214"},{"relation_name":"is_a","term_name":"mucopolysaccharidosis or mucopolysaccharidosis-like disorder","termid":"MONDO:0100365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005066","MONDO:0002561"],"is_obsolete":false,"name":"mucopolysaccharidosis","secondary_identifiers":["NORD:1461","SCTID:11380006","DOID:12798","GARD:7065","icd11.foundation:1596128696","MedDRA:10028093","MEDGEN:7733","OMIMPS:607014","Orphanet:79213","UMLS:C0026703","MESH:D009083","ICD9:277.5"],"synonyms":[{"name":"MPS","type":"related"},{"name":"Mucopolysaccharidoses","type":"exact"},{"name":"mucopolysaccharidoses","type":"exact"},{"name":"mucopolysaccharidosis","type":"exact"}],"termid":"MONDO:0019249","xrefs":{"Monarch":{"xref_id":"0019249"}}}


id: FYPO:0002176
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has normal volume and dimensions and is viable.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"normal vegetative cell size","termid":"FYPO:0001124"},{"relation_name":"is_a","term_name":"viable cell","termid":"FYPO:0000124"},{"relation_name":"is_a","term_name":"normal vegetative cell size","termid":"FYPO:0001124"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"has_part","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001312","FYPO:0000257","FYPO:0000004"],"is_obsolete":false,"name":"viable vegetative cell with normal cell size","synonyms":[{"name":"viable cell with normal cell size during vegetative growth","type":"exact"},{"name":"viable vegetative cell with normal cell length","type":"narrow"},{"name":"viable vegetative cell with normal cell size during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002176"}


id: PBO:0053752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 992","termid":"PBO:0053752"}


id: MONDO:0032742
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"encephalitis, acute, infection-induced, susceptibility to","termid":"MONDO:0800174"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"encephalopathy, acute, infection-induced, susceptibility to, 9","secondary_identifiers":["UMLS:C5193089","OMIM:618426","MEDGEN:1673394"],"synonyms":[{"name":"ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, SUSCEPTIBILITY TO, 9","type":"related"},{"name":"IIAE9","type":"related"}],"termid":"MONDO:0032742","xrefs":{"Monarch":{"xref_id":"0032742"}}}


id: GO:0016335
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a larval imaginal disc epithelium are generated and organized.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelium","termid":"GO:0002009"},{"relation_name":"is_a","term_name":"post-embryonic animal morphogenesis","termid":"GO:0009886"},{"relation_name":"part_of","term_name":"instar larval development","termid":"GO:0002168"},{"relation_name":"part_of","term_name":"imaginal disc morphogenesis","termid":"GO:0007560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"morphogenesis of larval imaginal disc epithelium","termid":"GO:0016335"}


id: MONDO:1012632
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any difference of sexual differentiation that occurs in Japanese medaka and is characterized by male sex reversal with female karyotype (XX).","definition_xrefs":["OMIA:000901-8090","PMID:20424640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"difference of sexual differentiation, non-human animal","termid":"MONDO:0700105"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XX difference of sexual development, Japanese medaka","termid":"MONDO:1012632","xrefs":{"Monarch":{"xref_id":"1012632"}}}


id: MONDO:0013678
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"EDICT (endothelial dystrophy-iris hypoplasia-congenital cataract-stromal thinning) syndrome is a very rare eye disorder representing a constellation of autosomal dominantly inherited ocular findings, including early-onset or congenital cataracts, corneal stromal thinning, early-onset keratoconus, corneal endothelial dystrophy, and iris hypoplasia.","definition_xrefs":["Orphanet:293936"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EDICT syndrome","secondary_identifiers":["SCTID:722439009","UMLS:C3280392","MEDGEN:482022","GARD:17349","OMIM:614303"],"synonyms":[{"name":"EDICT","type":"related"},{"name":"EDICT syndrome","type":"exact"},{"name":"KTCNCT","type":"exact"},{"name":"autosomal dominant keratoconus with early-onset anterior polar cataracts","type":"exact"},{"name":"endothelial dystrophy, iris hypoplasia, congenital cataract, and stromal thinning syndrome","type":"related"},{"name":"endothelial dystrophy-iris hypoplasia-congenital cataract-stromal thinning syndrome","type":"exact"},{"name":"familial keratoconus with cataract","type":"exact"},{"name":"keratoconus with cataract","type":"related"},{"name":"keratoconus, familial, with early-onset anterior polar cataract","type":"related"}],"termid":"MONDO:0013678","xrefs":{"Monarch":{"xref_id":"0013678"}}}


id: GO:0075208
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont modulates the frequency, rate or extent of cAMP-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by symbiont of host cAMP-mediated signal transduction (obsolete GO:0075208)","synonyms":[{"name":"modulation by symbiont of host cAMP-mediated signaling","type":"exact"}],"termid":"GO:0075208"}


id: PBO:0056951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 17","termid":"PBO:0056951"}


id: MONDO:0021583
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A melanocytic neoplasm that involves the zone of skin.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin neoplasm","termid":"MONDO:0002531"},{"relation_name":"is_a","term_name":"melanocytic neoplasm","termid":"MONDO:0021143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"melanocytic skin neoplasm","secondary_identifiers":["MEDGEN:138096","UMLS:C0349501","NCIT:C7161"],"synonyms":[{"name":"cutaneous melanocytic neoplasm","type":"exact"},{"name":"melanocytic neoplasm of skin","type":"exact"},{"name":"melanocytic neoplasm of zone of skin","type":"exact"},{"name":"melanocytic skin neoplasm","type":"exact"},{"name":"zone of skin melanocytic neoplasm","type":"exact"}],"termid":"MONDO:0021583","xrefs":{"Monarch":{"xref_id":"0021583"}}}


id: PBO:0083553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps verified gene DID2/YKR035W-A","termid":"PBO:0083553"}


id: PBO:0068275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNASE11 and RNASE12 antisense RNA 1","termid":"PBO:0068275"}


id: MONDO:0001168
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A type of spastic cerebral palsy characterized by increased muscle tone of the arm and leg on the same side of the body.","definition_xrefs":["NCIT:C116905"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spastic cerebral palsy","termid":"MONDO:0000396"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spastic hemiplegia","secondary_identifiers":["UMLS:C0154694","DOID:10967","ICD9:343.1","icd11.foundation:1030700023","ICD9:342.10","SCTID:79633009","MEDGEN:56345"],"synonyms":[{"name":"congenital hemiplegia","type":"related"},{"name":"hemiplegic cerebral palsy","type":"exact"},{"name":"hemiplegic infantile cerebral palsy","type":"exact"},{"name":"spastic hemiplegic cerebral palsy","type":"exact"}],"termid":"MONDO:0001168","xrefs":{"Monarch":{"xref_id":"0001168"}}}


id: PBO:0114503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces pombe specific microprotein, GPI anchor","termid":"PBO:0114503"}


id: FYPO:0005912
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which chromatin remodeling that occurs as part of meiosis I is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:19139281","GO:1905886"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiotic cell cycle process","termid":"FYPO:0007078"},{"relation_name":"is_a","term_name":"normal chromatin organization","termid":"FYPO:0007940"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal meiosis-specific chromatin remodeling","synonyms":[{"name":"normal chromatin remodeling during meiosis I","type":"exact"},{"name":"normal chromatin remodeling involved in meiosis I","type":"exact"},{"name":"normal meiotic nuclear division-specific chromatin remodeling","type":"exact"}],"termid":"FYPO:0005912"}


id: GO:0045149
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving acetoin, 3-hydroxy-2-butanone, often as part of a fermentation pathway or for use as a carbon source.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"secondary alcohol metabolic process","termid":"GO:1902652"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"acetoin metabolic process","synonyms":[{"name":"acetoin metabolism","type":"exact"}],"termid":"GO:0045149"}


id: PBO:0036441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ino80 complex actin-like protein Arp5","termid":"PBO:0036441"}


id: PBO:0031886
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human RFC5","termid":"PBO:0031886"}


id: MONDO:0002441
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal recessive inherited syndrome caused by mutations in the KCNE1 and KCNQ1 genes. It is characterized by congenital hearing loss and arrhythmia. It is a form of long QT syndrome.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"familial long QT syndrome","termid":"MONDO:0019171"},{"relation_name":"is_a","term_name":"familial long QT syndrome","termid":"MONDO:0019171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"Jervell and Lange-Nielsen syndrome","secondary_identifiers":["DOID:2842","NORD:1310","Orphanet:90647","GARD:3048","NCIT:C84793","MedDRA:10057936","SCTID:373905003","MEDGEN:5929","MESH:D029593","UMLS:C0022387","OMIMPS:220400"],"synonyms":[{"name":"Cardioauditory syndrome of Jervell and Lange-Nielsen","type":"related"},{"name":"JLNS1","type":"related"},{"name":"Jervell Lange-Nielsen syndrome","type":"exact"},{"name":"Jervell and Lange Nielsen syndrome","type":"exact"},{"name":"Jervell and Lange-Nielsen syndrome 1","type":"related"},{"name":"Jervell and Lange-Nielsen syndrome type 1","type":"related"},{"name":"Jervell and Lange-Nielson syndrome","type":"exact"},{"name":"Jervell-Lange Nielsen syndrome","type":"exact"},{"name":"Surdo-cardiac syndrome","type":"related"},{"name":"deafness, congenital, and functional heart disease","type":"related"},{"name":"long QT interval-deafness syndrome","type":"exact"},{"name":"prolonged QT interval in EKG and sudden death","type":"related"}],"termid":"MONDO:0002441","xrefs":{"Monarch":{"xref_id":"0002441"}}}


id: MONDO:0011651
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intellectual disability, short stature, facial anomalies, and joint dislocations","secondary_identifiers":["UMLS:C1853507","MESH:C565248","MEDGEN:342897","OMIM:606220"],"synonyms":[{"name":"intellectual developmental disorder with short stature, facial anomalies, and speech defects","type":"exact"},{"name":"intellectual disability, short stature, facial anomalies, and JOINT dislocations","type":"related"},{"name":"mental retardation, short stature, facial anomalies, and JOINT dislocations","type":"related"}],"termid":"MONDO:0011651","xrefs":{"Monarch":{"xref_id":"0011651"}}}


id: GO:0002458
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Tolerance induction of T cells in the periphery, in this case, any location in the body other than the thymus.","definition_xrefs":["ISBN:0781735149","GOC:jal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell mediated immunity","termid":"GO:0002456"},{"relation_name":"is_a","term_name":"peripheral tolerance induction","termid":"GO:0002465"},{"relation_name":"is_a","term_name":"T cell tolerance induction","termid":"GO:0002517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peripheral T cell tolerance induction","synonyms":[{"name":"peripheral T lymphocyte tolerance induction","type":"exact"},{"name":"peripheral T-cell tolerance induction","type":"exact"},{"name":"peripheral T-lymphocyte tolerance induction","type":"exact"}],"termid":"GO:0002458"}


id: GO:0039685
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A viral DNA replication process where a 3' hairpin structure in the viral single-stranded DNA (ssDNA) template serves as a primer for host enzymes to synthesize DNA.","definition_xrefs":["VZ:2656","GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral DNA genome replication","termid":"GO:0039693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"rolling hairpin viral DNA replication","synonyms":[{"name":"ssDNA rolling hairpin viral DNA replication","type":"exact"}],"termid":"GO:0039685"}


id: PBO:0113523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuolar alpha mannosidase; involved in free oligosaccharide (fOS) degradation; upregulated under glucose starvation; targeted to vacuole via CVT pathway and AP-3 pathway","termid":"PBO:0113523"}


id: FYPO:0004914
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the sequence of the telomeric repeating unit differs from normal.","definition_xrefs":["PMID:18157152","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985"],"is_obsolete":false,"name":"abnormal telomeric repeat sequence","termid":"FYPO:0004914"}


id: MONDO:1010932
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An early onset syndrome of impaired neuromuscular transmission associated with an acetylcholinesterase deficiency in dogs due to a variation in the COLQ gene.","definition_xrefs":["PMID:32668077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"congenital neuromuscular disease, non-human animal","termid":"MONDO:1011851"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital myasthenic syndrome, COLQ-related, dog","secondary_identifiers":["OMIA:001928-9615"],"termid":"MONDO:1010932","xrefs":{"Monarch":{"xref_id":"1010932"}}}


id: GO:0021941
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that stops, prevents or reduces the rate or extent of granule cell precursor proliferation.","definition_xrefs":["PMID:15157725","GOC:dgh","GOC:dph","GO_REF:0000021","GOC:cls","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cerebellar granule cell precursor proliferation","termid":"GO:0021936"},{"relation_name":"is_a","term_name":"negative regulation of neural precursor cell proliferation","termid":"GO:2000178"},{"relation_name":"negatively_regulates","term_name":"cerebellar granule cell precursor proliferation","termid":"GO:0021930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cerebellar granule cell precursor proliferation","synonyms":[{"name":"down regulation of granule cell precursor proliferation","type":"exact"},{"name":"down-regulation of granule cell precursor proliferation","type":"exact"},{"name":"downregulation of granule cell precursor proliferation","type":"exact"},{"name":"inhibition of granule cell precursor proliferation","type":"narrow"}],"termid":"GO:0021941"}


id: GO:0031957
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a very long-chain fatty acid + ATP + CoA = a very long-chain fatty acyl-CoA + AMP + diphosphate. A very long-chain fatty acid has an aliphatic tail containing more than 22 carbons.","definition_xrefs":["PMID:18024425","RHEA:54536"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid-CoA ligase activity","termid":"GO:0120515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016874","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"very long-chain fatty acid-CoA ligase activity","secondary_identifiers":["Reactome:R-HSA-5696007","Reactome:R-HSA-9914143","Reactome:R-HSA-5695957","Reactome:R-HSA-8875077"],"synonyms":[{"name":"very-long-chain fatty acid activation","type":"related"},{"name":"very-long-chain fatty acid-CoA ligase activity","type":"exact"},{"name":"very-long-chain-fatty-acid-CoA ligase activity","type":"exact"}],"termid":"GO:0031957"}


id: MONDO:0018875
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare cancer predisposition syndrome characterized by the early-onset of multiple primary cancers such as breast cancer, soft tissue and bone sarcomas, brain tumors and adrenal cortical carcinoma (ACC).","definition_xrefs":["Orphanet:524"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"Li-Fraumeni syndrome","secondary_identifiers":["UMLS:C0085390","MEDGEN:88399","icd11.foundation:1968061860","OMIM:609266","NORD:1913","DOID:0111503","GARD:6902","DOID:3012","MedDRA:10066795","MESH:D016864","ICD9:V84.01","OMIM:151623","NCIT:C3476","SCTID:428850001"],"synonyms":[{"name":"LFS","type":"exact"},{"name":"LFS1","type":"related"},{"name":"LFS3","type":"related"},{"name":"Li Fraumeni syndrome","type":"exact"},{"name":"Li-Fraumeni familial cancer susceptibility syndrome","type":"exact"},{"name":"Li-Fraumeni familiar cancer susceptibility syndrome","type":"exact"},{"name":"Li-Fraumeni syndrome","type":"exact"},{"name":"Li-Fraumeni syndrome caused by mutation in TP53","type":"exact"},{"name":"Li-Fraumeni-like syndrome","type":"related"},{"name":"SBLA syndrome","type":"exact"},{"name":"SBLA syndrome (sarcoma, breast, leukemia, and adrenal gland)","type":"related"},{"name":"TP53 Li-Fraumeni syndrome","type":"exact"},{"name":"sarcoma family syndrome of 51 and Fraumeni","type":"related"},{"name":"sarcoma family syndrome of Li and Fraumeni","type":"related"},{"name":"sarcoma, breast, leukaemia and adrenal gland syndrome","type":"exact"},{"name":"sarcoma, breast, leukemia and adrenal gland syndrome","type":"exact"}],"termid":"MONDO:0018875","xrefs":{"Monarch":{"xref_id":"0018875"}}}


id: PBO:0049534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A.Z histone pseudogene 5","termid":"PBO:0049534"}


id: PBO:0013012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U4/U6 x U5 tri-snRNP complex subunit Prp4 family, Rna4","termid":"PBO:0013012"}


id: PBO:0051376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 3/OR22-2 (pseudogene)","termid":"PBO:0051376"}


id: PBO:0076285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SYF2 pre-mRNA splicing factor pseudogene 2","termid":"PBO:0076285"}


id: MOD:00734
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with an N-acetylgalactosamine group through a glycosidic bond.","definition_xrefs":["DeltaMass:247"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetylhexosaminylated residue","termid":"MOD:00436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"N-acetylaminogalactosylated","synonyms":[{"name":"GalNAc","type":"exact"},{"name":"N-acetylhexosamines (GalNAc, GlcNAc)","type":"exact"}],"termid":"MOD:00734"}


id: PBO:0056285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannosidase endo-alpha","termid":"PBO:0056285"}


id: PBO:0043229
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chloride voltage-gated channel 1","termid":"PBO:0043229"}


id: PBO:0074187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 38 member 8","termid":"PBO:0074187"}


id: PBO:0076012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stress induced phosphoprotein 1 pseudogene 3","termid":"PBO:0076012"}


id: PBO:0056307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase kinase 3","termid":"PBO:0056307"}


id: GO:0075227
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of an encysted zoospore germination.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of spore germination","termid":"GO:1904359"},{"relation_name":"regulates","term_name":"encysted zoospore germination","termid":"GO:0075226"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of encysted zoospore germination","synonyms":[{"name":"modulation of encysted zoospore germination on or near host","type":"exact"},{"name":"regulation of encysted zoospore germination on or near host","type":"narrow"}],"termid":"GO:0075227"}


id: PATO:0002001
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly.","definition_xrefs":["PATOC:CJM"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"lacks parts or has fewer parts of type","termid":"PATO:0001999"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has fewer parts of type","secondary_identifiers":["PATO:0001569"],"synonyms":[{"name":"decreased number of","type":"exact"},{"name":"has decreased number of","type":"exact"},{"name":"has fewer physical parts of type","type":"exact"}],"termid":"PATO:0002001"}


id: PBO:0110429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VEGFC mRNA stability associated lncRNA","termid":"PBO:0110429"}


id: PBO:0040052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein 2/3 complex subunit 3","termid":"PBO:0040052"}


id: PBO:0076559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 2B","termid":"PBO:0076559"}


id: PBO:0017798
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PEp Transporter","termid":"PBO:0017798"}


id: FYPO:0003523
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of hercynylselenocysteine measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell","termid":"FYPO:0000990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular hercynylselenocysteine level","synonyms":[{"name":"increased hercynylselenocysteine level","type":"exact"}],"termid":"FYPO:0003523"}


id: PBO:0071354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L29 pseudogene 13","termid":"PBO:0071354"}


id: PBO:0039962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 2 binding protein pseudogene 5","termid":"PBO:0039962"}


id: GO:0032438
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a melanosome. A melanosome is a tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pigment granule organization","termid":"GO:0048753"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"melanosome organization","synonyms":[{"name":"melanosome organisation","type":"exact"},{"name":"melanosome organization and biogenesis","type":"related"}],"termid":"GO:0032438"}


id: PBO:0058698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6826","termid":"PBO:0058698"}


id: MONDO:0859307
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"osteochondrodysplasia","termid":"MONDO:0005516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"cleidocranial dysplasia 2","secondary_identifiers":["MEDGEN:1824016","OMIM:620099","UMLS:C5774243"],"termid":"MONDO:0859307","xrefs":{"Monarch":{"xref_id":"0859307"}}}


id: MONDO:0007957
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediosternal depigmentation line","secondary_identifiers":["UMLS:C1835085","OMIM:155200","MEDGEN:371971"],"synonyms":[{"name":"mediosternal depigmentation line","type":"exact"}],"termid":"MONDO:0007957","xrefs":{"Monarch":{"xref_id":"0007957"}}}


id: PBO:0063616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1","termid":"PBO:0063616"}


id: PBO:0062363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily W member 1 pseudogene","termid":"PBO:0062363"}


id: GO:0032902
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of nerve growth factor (NGF) due to biosynthesis or secretion by cells in a neuron's target field, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:mah","GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurotrophin production","termid":"GO:0032898"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nerve growth factor production","synonyms":[{"name":"NGF production","type":"exact"},{"name":"beta-nerve growth factor production","type":"exact"}],"termid":"GO:0032902"}


id: MONDO:0976133
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myofibrillar myopathy","termid":"MONDO:0018943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"myopathy, myofibrillar, 13, with rimmed vacuoles","secondary_identifiers":["OMIM:621078"],"termid":"MONDO:0976133","xrefs":{"Monarch":{"xref_id":"0976133"}}}


id: MONDO:0012647
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete generalized epilepsy with febrile seizures plus, type 3 (obsolete MONDO:0012647)","termid":"MONDO:0012647","xrefs":{"Monarch":{"xref_id":"0012647"}}}


id: PBO:0002486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-acyldihydroxyacetone phosphate reductase (predicted)","termid":"PBO:0002486"}


id: PBO:0074647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 37","termid":"PBO:0074647"}


id: PBO:0091763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S acidic ribosomal protein P2","termid":"PBO:0091763"}


id: PBO:0054277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1667","termid":"PBO:0054277"}


id: GO:1904433
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of ferrous iron binding.","definition_xrefs":["GOC:TermGenie","GOC:BHF","GO_REF:0000059","GOC:kom","PMID:18353247"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of ferrous iron binding (obsolete GO:1904433)","synonyms":[{"name":"down regulation of ferrous iron binding","type":"exact"},{"name":"down-regulation of ferrous iron binding","type":"exact"},{"name":"downregulation of ferrous iron binding","type":"exact"},{"name":"inhibition of ferrous iron binding","type":"narrow"}],"termid":"GO:1904433"}


id: PATO:0000317
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color that lacks any hues as parts.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"color","termid":"PATO:0000014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"black","termid":"PATO:0000317"}


id: FYPO:0006815
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 in centromere inner repeat regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah","PMID:30652128"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K14 acetylation during vegetative growth","termid":"FYPO:0005310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002494","FYPO:0000002","FYPO:0002274","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased histone H3-K14 acetylation at centromere inner repeat during vegetative growth","synonyms":[{"name":"increased histone H3-K14 acetylation at centromere imr during vegetative growth","type":"exact"},{"name":"increased histone H3-K14 acetylation at centromere inner repeat during mitotic cell cycle","type":"related"},{"name":"increased histone H3-K14 acetylation at centromere inner repeat region during vegetative growth","type":"exact"},{"name":"increased histone H3K14 acetylation at centromere inner repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0006815"}


id: PBO:0078949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Arg (anticodon TCT) 1-1","termid":"PBO:0078949"}


id: MONDO:0020184
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare eyebrow/eyelashes anomaly (obsolete MONDO:0020184)","secondary_identifiers":["Orphanet:98594"],"termid":"MONDO:0020184","xrefs":{"Monarch":{"xref_id":"0020184"}}}


id: PBO:0086400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative divalent metal ion transporter involved in iron homeostasis; transcriptionally regulated by metal ions; member of the Nramp family of metal transport proteins; protein abundance increases in response to DNA replication stress","termid":"PBO:0086400"}


id: MOD:01910
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes one hydrogen atom of a residue with one fluorine atom.","definition_xrefs":["Unimod:127"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fluorinated residue","termid":"MOD:00498"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monofluorinated residue","synonyms":[{"name":"F1Res","type":"exact"}],"termid":"MOD:01910"}


id: PBO:0039412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANAPC15 pseudogene 2","termid":"PBO:0039412"}


id: GO:0099156
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling in which the ligand is carried between cells by an exosome.","definition_xrefs":["GOC:dos","PMID:19837038"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"cell-cell signaling via exosome","synonyms":[{"name":"exosome mediated","type":"exact"}],"termid":"GO:0099156"}


id: FYPO:0002647
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of threonine residues in one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal during mitosis.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete decreased protein threonine phosphorylation during mitosis (obsolete FYPO:0002647)","synonyms":[{"name":"decreased peptidyl-threonine phosphorylation during mitosis","type":"exact"},{"name":"decreased protein threonine phosphorylation during mitosis during vegetative growth","type":"exact"},{"name":"decreased protein threonine phosphorylation during mitotic M phase","type":"related"},{"name":"decreased protein threonine phosphorylation during mitotic M phase during mitotic cell cycle","type":"related"},{"name":"decreased threonine phosphorylation during mitosis","type":"exact"},{"name":"reduced protein threonine phosphorylation during mitosis","type":"exact"}],"termid":"FYPO:0002647"}


id: FYPO:0000387
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of biofilm formation is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal biofilm formation","termid":"FYPO:0000630"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased biofilm formation","synonyms":[{"name":"biofilm formation: decreased","type":"related"},{"name":"reduced biofilm formation","type":"exact"}],"termid":"FYPO:0000387"}


id: FYPO:0005063
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the methylation of lysine at position 4 of histone H3 at the mating type locus occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone methylation during vegetative growth","termid":"FYPO:0000869"},{"relation_name":"is_a","term_name":"abnormal histone H3-K4 methylation during vegetative growth","termid":"FYPO:0002330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002274","FYPO:0002494","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased histone H3-K4 methylation at mating type locus during vegetative growth","synonyms":[{"name":"increased histone H3 K4 methylation at mating type locus during vegetative growth","type":"exact"},{"name":"increased histone H3-K4 methylation at mating type locus during mitotic cell cycle","type":"related"},{"name":"increased histone H3K4 methylation at mating type locus during vegetative growth","type":"exact"},{"name":"increased histone H3K4me at mating type locus during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K4 methylation at mating type locus during vegetative growth","type":"exact"}],"termid":"FYPO:0005063"}


id: PBO:0111744
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-fungal Zn(2)-Cys(6) binuclear cluster domain","termid":"PBO:0111744"}


id: PBO:0044290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome X open reading frame 65","termid":"PBO:0044290"}


id: SO:0002169
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that falls in the polypyrimidine tract at 3' end of intron between 17 and 3 bases from the end (acceptor -3 to acceptor -17).","direct_ancestors":[{"relation_name":"is_a","term_name":"splicing_variant","termid":"SO:0001568"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splice_polypyrimidine_tract_variant","synonyms":[{"name":"splice polypyrimidine tract variant","type":"exact"}],"termid":"SO:0002169"}


id: PBO:0078283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Cys (anticodon GCA) 16-1","termid":"PBO:0078283"}


id: PBO:0040664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bardet-Biedl syndrome 10","termid":"PBO:0040664"}


id: GO:0050812
data:
  {"annotated_genes":["SJAG_01402"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76921],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010510"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of acyl-CoA.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biosynthetic process","termid":"GO:0009889"},{"relation_name":"is_a","term_name":"regulation of fatty acid metabolic process","termid":"GO:0019217"},{"relation_name":"is_a","term_name":"regulation of nucleobase-containing compound metabolic process","termid":"GO:0019219"},{"relation_name":"is_a","term_name":"regulation of phosphate metabolic process","termid":"GO:0019220"},{"relation_name":"is_a","term_name":"regulation of amide metabolic process","termid":"GO:0034248"},{"relation_name":"is_a","term_name":"regulation of sulfur metabolic process","termid":"GO:0042762"},{"relation_name":"regulates","term_name":"acyl-CoA biosynthetic process","termid":"GO:0071616"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01402":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006790","GO:0006629","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"regulation of acyl-CoA biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"regulation of acyl-CoA anabolism","type":"exact"},{"name":"regulation of acyl-CoA biosynthesis","type":"exact"},{"name":"regulation of acyl-CoA formation","type":"exact"},{"name":"regulation of acyl-CoA synthesis","type":"exact"}],"termid":"GO:0050812","terms_by_termid":{"GO:0010510":null}}


id: GO:0090486
data:
  {"annotated_genes":["SJAG_02817"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108687],"is_not":false,"summary":null,"term":"GO:0090486"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the oxygen atom of a nucleoside residue in a small RNA molecule. Reaction: S-adenosyl-L-methionine + small RNA = S-adenosyl-L-homocysteine + small RNA containing a 3'-terminal 2'-O-methylnucleotide.","definition_xrefs":["GOC:tb","GOC:vw","RHEA:37887"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA 2'-O-methyltransferase activity","termid":"GO:0062105"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02817":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0140098","GO:0003824","GO:0016741","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"small RNA 2'-O-methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:2.1.1.386"],"synonyms":[{"name":"small RNA 2'-O-methyltransferase","type":"exact"}],"termid":"GO:0090486","terms_by_termid":{"GO:0090486":null}}


id: GO:0031601
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The core complex of a proteasome located in the nucleus of a cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteasome core complex","termid":"GO:0005839"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"nuclear proteasome complex","termid":"GO:0031595"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"nuclear proteasome core complex","termid":"GO:0031601"}


id: GO:0018998
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete metaxin (obsolete GO:0018998)","synonyms":[{"name":"metaxin","type":"exact"}],"termid":"GO:0018998"}


id: PBO:0057195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 367","termid":"PBO:0057195"}


id: PBO:0079593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 D4 (putative)","termid":"PBO:0079593"}


id: PR:O94328
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nbl1 gene.","definition_xrefs":["UniProtKB:O94328","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 118 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC725.12","synonyms":[{"name":"Spom972h-nbl1","type":"exact"}],"termid":"PR:O94328"}


id: GO:0052751
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-mannose + H2O = GMP + mannose-1-phosphate.","definition_xrefs":["PMID:16766526"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"GDP-mannose hydrolase activity","synonyms":[{"name":"GDP-mannose pyrophosphatase activity","type":"related"}],"termid":"GO:0052751"}


id: PBO:0053242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LHFPL tetraspan subfamily member 6","termid":"PBO:0053242"}


id: GO:2000836
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of androgen secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of steroid hormone secretion","termid":"GO:2000833"},{"relation_name":"is_a","term_name":"regulation of androgen secretion","termid":"GO:2000834"},{"relation_name":"positively_regulates","term_name":"androgen secretion","termid":"GO:0035935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0023052"],"is_obsolete":false,"name":"positive regulation of androgen secretion","termid":"GO:2000836"}


id: GO:0008823
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 Cu2+ + NADH = 2 Cu+ + H+ + NAD+.","definition_xrefs":["RHEA:66848","PMID:10510271"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on metal ions, NAD or NADP as acceptor","termid":"GO:0016723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"cupric reductase (NADH) activity","secondary_identifiers":["MetaCyc:R170-RXN"],"termid":"GO:0008823"}


id: PBO:0028421
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_coenzyme_Q10_level","termid":"PBO:0028421"}


id: GO:0140943
data:
  {"annotated_genes":["SJAG_01146"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[116627],"is_not":false,"summary":null,"term":"GO:0140943"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysyl(20)-[histone H4] + 3 S-adenosyl-L-methionine = 3 H+ + N(6),N(6),N(6)-trimethyl-L-lysyl(20)-[histone H4] + 3 S-adenosyl-L-homocysteine. This reaction is the addition of three methyl groups to the lysine residue at position 20 of the histone H4 protein, producing histone H4K20me3.","definition_xrefs":["RHEA:64456"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H4K20 methyltransferase activity","termid":"GO:0042799"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01146":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0008276"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0008276","GO:0140096","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"histone H4K20 trimethyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:2.1.1.372"],"synonyms":[{"name":"histone H4K20 trimethylase activity","type":"exact"},{"name":"histone H4K20 trimethylation","type":"exact"},{"name":"histone lysine N-trimethyltransferase activity (H4-K20 specific)","type":"exact"}],"termid":"GO:0140943","terms_by_termid":{"GO:0140943":null}}


id: PBO:0082304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Asparagine synthetase; catalyzes the synthesis of L-asparagine from L-aspartate in the asparagine biosynthetic pathway; ASN2 has a paralog, ASN1, that arose from the whole genome duplication","termid":"PBO:0082304"}


id: GO:1904793
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of euchromatin binding.","definition_xrefs":["GO_REF:0000059","GOC:BHF","GOC:BHF_telomere","GOC:nc","GOC:TermGenie","PMID:22723415"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of euchromatin binding (obsolete GO:1904793)","termid":"GO:1904793"}


id: PBO:0049151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione peroxidase 8 (putative)","termid":"PBO:0049151"}


id: PR:Q9URX8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nuclear pore complex protein Nup155 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02087","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin C890.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC890.06","secondary_identifiers":["UniProtKB:Q9URX8"],"synonyms":[{"name":"Spom972h-NUP155","type":"exact"}],"termid":"PR:Q9URX8"}


id: PR:O74943
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- swp1 gene.","definition_xrefs":["UniProtKB:O74943","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C553.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC553.06","synonyms":[{"name":"Spom972h-swp1","type":"exact"}],"termid":"PR:O74943"}


id: FYPO:0008177
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNAs transcribed from the centromere measured in a cell is normal (i.e. indistinguishable from wild type).","direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level during vegetative growth","termid":"FYPO:0001317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal centromeric RNA level during vegetative growth","termid":"FYPO:0008177"}


id: PBO:0028134
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_snoRNA_primary_transcript_level","termid":"PBO:0028134"}


id: MONDO:0025701
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"leukodystrophy, hypomyelinating, 22","secondary_identifiers":["DOID:0070402","UMLS:C5543406","MEDGEN:1787833","OMIM:619328"],"synonyms":[{"name":"HLD22","type":"exact"}],"termid":"MONDO:0025701","xrefs":{"Monarch":{"xref_id":"0025701"}}}


id: PBO:0066085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginyl-tRNA synthetase 1 pseudogene 1","termid":"PBO:0066085"}


id: PBO:0056503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyl-CpG binding domain protein 5","termid":"PBO:0056503"}


id: PBO:0012037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small RNA 2'-O-methyltransferase activity (predicted)","termid":"PBO:0012037"}


id: MONDO:0016864
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Duane-radial ray syndrome","termid":"MONDO:0011812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005497"],"is_obsolete":false,"name":"Okihiro syndrome due to a point mutation","secondary_identifiers":["UMLS:C5679683","Orphanet:261647","GARD:20788","MEDGEN:1842838"],"synonyms":[{"name":"Duane-radial ray syndrome due to a point mutation","type":"exact"}],"termid":"MONDO:0016864","xrefs":{"Monarch":{"xref_id":"0016864"}}}


id: GO:0046726
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process where the infecting virus increases the levels of viral proteins in a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation by virus of viral protein levels in host cell","termid":"GO:0046719"},{"relation_name":"is_a","term_name":"positive regulation of viral process","termid":"GO:0048524"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation by virus of viral protein levels in host cell","synonyms":[{"name":"activation of viral protein levels in host cell","type":"narrow"},{"name":"positive regulation of viral protein levels","type":"exact"},{"name":"stimulation of viral protein levels in host cell","type":"narrow"},{"name":"up regulation of viral protein levels in host cell","type":"exact"},{"name":"up-regulation of viral protein levels in host cell","type":"exact"},{"name":"upregulation of viral protein levels in host cell","type":"exact"}],"termid":"GO:0046726"}


id: MONDO:0000399
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete dyskinetic cerebral palsy (obsolete MONDO:0000399)","termid":"MONDO:0000399","xrefs":{"Monarch":{"xref_id":"0000399"}}}


id: PBO:0056484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MATR3 pseudogene 1","termid":"PBO:0056484"}


id: MONDO:0020040
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Differences of sex development in individuals with 46,XY karyotype.","definition_xrefs":["NCIT:C127171"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of sexual differentiation","termid":"MONDO:0002145"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"46,XY disorder of sex development","secondary_identifiers":["NANDO:2200393","MEDGEN:414114","MESH:D058490","GARD:8538","SCTID:8234004","UMLS:C2751824","Orphanet:98085"],"synonyms":[{"name":"46, XY DSD","type":"related"},{"name":"46, XY disorders of sexual development","type":"related"},{"name":"46, XY female","type":"related"},{"name":"46,XY DSD","type":"exact"},{"name":"46,XY differences of Sex development","type":"exact"},{"name":"46,XY disorders of Sex development","type":"exact"},{"name":"XY female","type":"related"}],"termid":"MONDO:0020040","xrefs":{"Monarch":{"xref_id":"0020040"}}}


id: GO:0090026
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate, or extent of monocyte chemotaxis.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte chemotaxis","termid":"GO:0002690"},{"relation_name":"is_a","term_name":"positive regulation of mononuclear cell migration","termid":"GO:0071677"},{"relation_name":"is_a","term_name":"regulation of monocyte chemotaxis","termid":"GO:0090025"},{"relation_name":"positively_regulates","term_name":"monocyte chemotaxis","termid":"GO:0002548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of monocyte chemotaxis","termid":"GO:0090026"}


id: GO:0060337
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by type I interferon binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families.","definition_xrefs":["GOC:signaling","GOC:dph","PMID:32464097","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interferon-mediated signaling pathway","termid":"GO:0140888"},{"relation_name":"part_of","term_name":"cellular response to type I interferon","termid":"GO:0071357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"type I interferon-mediated signaling pathway","secondary_identifiers":["Reactome:R-HSA-909733"],"synonyms":[{"name":"type I interferon signaling pathway","type":"exact"},{"name":"type I interferon-activated signaling pathway","type":"exact"}],"termid":"GO:0060337"}


id: PR:O94685
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A RalBP1-associated Eps domain-containing protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02896"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBA domain-containing protein 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC83.01","secondary_identifiers":["UniProtKB:O94685"],"synonyms":[{"name":"Spom972h-REPS1","type":"exact"}],"termid":"PR:O94685"}


id: GO:0033856
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-deoxy-D-xylulose 5-phosphate + 3-amino-2-oxopropyl phosphate = 2 H2O + H+ + phosphate + pyridoxine 5'-phosphate.","definition_xrefs":["RHEA:15265"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring nitrogenous groups","termid":"GO:0016769"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016769","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"pyridoxine 5'-phosphate synthase activity","secondary_identifiers":["EC:2.6.99.2","KEGG_REACTION:R05838","MetaCyc:PDXJ-RXN"],"synonyms":[{"name":"1-deoxy-D-xylulose-5-phosphate:3-amino-2-oxopropyl phosphate 3-amino-2-oxopropyltransferase (phosphate-hydrolysing; cyclizing) activity","type":"related"},{"name":"PNP synthase activity","type":"related"},{"name":"pyridoxine 5-phosphate phospho lyase activity","type":"related"}],"termid":"GO:0033856"}


id: GO:0019290
data:
  {"annotated_genes":["SJAG_04032","SJAG_00469","SJAG_04031","SJAG_00792"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104940,59555,93589],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031169"},{"annotations":[93535],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905569"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of siderophores, low molecular weight Fe(III)-chelating substances made by aerobic or facultatively anaerobic bacteria, especially when growing under iron deficient conditions. The complexes of Fe(3+)-siderophores have very high stability constants and are taken up by specific transport systems by microorganisms; the subsequent release of iron requires enzymatic action.","definition_xrefs":["PMID:20376388"],"direct_ancestors":[{"relation_name":"is_a","term_name":"siderophore metabolic process","termid":"GO:0009237"},{"relation_name":"is_a","term_name":"nonribosomal peptide biosynthetic process","termid":"GO:0019184"},{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00469":null,"SJAG_00792":null,"SJAG_04031":null,"SJAG_04032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"siderophore biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["GO:0031178","GO:0031180"],"synonyms":[{"name":"siderochrome biosynthesis","type":"narrow"},{"name":"siderochrome biosynthetic process","type":"narrow"},{"name":"siderophore anabolism","type":"exact"},{"name":"siderophore biosynthesis","type":"exact"},{"name":"siderophore biosynthetic process, peptide formation","type":"narrow"},{"name":"siderophore biosynthetic process, peptide modification","type":"narrow"},{"name":"siderophore formation","type":"exact"},{"name":"siderophore synthesis","type":"exact"}],"termid":"GO:0019290","terms_by_termid":{"GO:0031169":null,"GO:1905569":null}}


id: GO:0001650
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A structure found most metazoan nucleoli, but not usually found in lower eukaryotes; surrounded by the dense fibrillar component; the zone of transcription from multiple copies of the pre-rRNA genes is in the border region between these two structures.","definition_xrefs":["PMID:10754561"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"nucleolus","termid":"GO:0005730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005730"}],"interesting_parent_ids":["GO:0005575","GO:0005730","GO:0005634"],"is_obsolete":false,"name":"fibrillar center","synonyms":[{"name":"fibrillar centre","type":"exact"}],"termid":"GO:0001650"}


id: GO:1900148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of Schwann cell migration.","definition_xrefs":["GOC:sjw","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of Schwann cell migration","termid":"GO:1900147"},{"relation_name":"is_a","term_name":"negative regulation of glial cell migration","termid":"GO:1903976"},{"relation_name":"negatively_regulates","term_name":"Schwann cell migration","termid":"GO:0036135"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of Schwann cell migration","synonyms":[{"name":"down regulation of Schwann cell migration","type":"exact"},{"name":"down-regulation of Schwann cell migration","type":"exact"},{"name":"downregulation of Schwann cell migration","type":"exact"},{"name":"inhibition of Schwann cell migration","type":"narrow"}],"termid":"GO:1900148"}


id: PATO:0000697
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000697 relative texture value (obsolete PATO:0000697)","termid":"PATO:0000697"}


id: PR:Q10428
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- par1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta 1 isoform (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC188.02","synonyms":[{"name":"PP2A, B subunit, B' delta 1 isoform (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-par1","type":"exact"}],"termid":"PR:Q10428"}


id: PBO:0075283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 24","termid":"PBO:0075283"}


id: PBO:0082587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cis-golgi GTPase-activating protein (GAP) for yeast Rabs; the Rab family members are Ypt1p (in vivo) and for Ypt1p, Sec4p, Ypt7p, and Ypt51p (in vitro); involved in vesicle docking and fusion; interacts with autophagosome component Atg8p","termid":"PBO:0082587"}


id: PBO:0056171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MADD antisense RNA 1","termid":"PBO:0056171"}


id: PBO:0039485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 20 family member A8, pseudogene","termid":"PBO:0039485"}


id: PR:Q9HE08
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A methylthioribulose-1-phosphate dehydratase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10640:SF2","PRO:DNx","OMA:SCHPO00873"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylthioribulose-1-phosphate dehydratase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC20H4.05c","secondary_identifiers":["UniProtKB:Q9HE08"],"synonyms":[{"name":"MTRu-1-P dehydratase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-APIP","type":"exact"}],"termid":"PR:Q9HE08"}


id: GO:1903960
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of anion transmembrane transport.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of monoatomic ion transmembrane transport","termid":"GO:0034766"},{"relation_name":"is_a","term_name":"negative regulation of monoatomic anion transport","termid":"GO:1903792"},{"relation_name":"is_a","term_name":"regulation of monoatomic anion transmembrane transport","termid":"GO:1903959"},{"relation_name":"negatively_regulates","term_name":"monoatomic anion transmembrane transport","termid":"GO:0098656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"negative regulation of anion transmembrane transport","synonyms":[{"name":"down regulation of anion transmembrane transport","type":"exact"},{"name":"down-regulation of anion transmembrane transport","type":"exact"},{"name":"downregulation of anion transmembrane transport","type":"exact"},{"name":"inhibition of anion transmembrane transport","type":"narrow"}],"termid":"GO:1903960"}


id: PBO:0028547
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_RNA_level_during_cellular_response_to_copper_ion_starvation","termid":"PBO:0028547"}


id: PBO:0113741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTNAP1 pseudogene 1","termid":"PBO:0113741"}


id: GO:1990440
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of an endoplasmic reticulum stress.","definition_xrefs":["GOC:bf","GOC:PARL","PMID:21113145"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress (obsolete GO:1990440)","synonyms":[{"name":"ER stress-induced upregulation of transcription","type":"broad"},{"name":"activation of transcription from RNA polymerase II promoter in response to ER stress","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter in response to ER stress","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress","type":"exact"},{"name":"up-regulation of transcription induced by ER stress","type":"broad"},{"name":"upregulation of Pol II transcription induced by ER stress","type":"exact"},{"name":"upregulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress","type":"exact"}],"termid":"GO:1990440"}


id: MONDO:0007894
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Leri pleonosteosis is characterized by broadening and deformity of the thumbs and great toes in a valgus position (a 'spade-shaped' appearance), flexion contracture of the interphalangeal joints, generalized limitation of joint mobility, short stature, and often mongoloid facies. Additional malformations include genu recurvatum, enlargement of the posterior neural arches of the cervical vertebrae, and thickening of the palmar and forearm fasciae. A few multigenerational families have been reported so far. The disease is inherited in an autosomal dominant manner.","definition_xrefs":["Orphanet:2900"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"},{"relation_name":"is_a","term_name":"acromelic dysplasia","termid":"MONDO:0019695"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Leri pleonosteosis","secondary_identifiers":["UMLS:C1835450","MEDGEN:331978","NORD:1364","MESH:C537118","OMIM:151200","GARD:88"],"synonyms":[{"name":"Leri pleonosteosis","type":"exact"},{"name":"Leri type pleonosteosis","type":"related"},{"name":"Leri's pleonosteosis","type":"related"},{"name":"chromosome 8q22.1 DUPLICATION syndrome","type":"related"},{"name":"leri pleonosteosis chromosome duplication syndrome","type":"exact"},{"name":"pleonosteosis Leri type","type":"related"}],"termid":"MONDO:0007894","xrefs":{"Monarch":{"xref_id":"0007894"}}}


id: GO:0102428
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: kaempferol 3-O-glucoside + UDP-alpha-D-glucose = kaempferol-3-gentiobioside + UDP.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete kaempferol-3-O-glucoside 1,6-glucosyltransferase activity (obsolete GO:0102428)","termid":"GO:0102428"}


id: GO:0043313
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of neutrophil degranulation.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of myeloid leukocyte mediated immunity","termid":"GO:0002886"},{"relation_name":"is_a","term_name":"regulation of leukocyte degranulation","termid":"GO:0043300"},{"relation_name":"is_a","term_name":"regulation of immune response","termid":"GO:0050776"},{"relation_name":"regulates","term_name":"neutrophil degranulation","termid":"GO:0043312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of neutrophil degranulation","synonyms":[{"name":"regulation of neutrophil granule exocytosis","type":"exact"}],"termid":"GO:0043313"}


id: MONDO:0044268
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete transsexuality (obsolete MONDO:0044268)","secondary_identifiers":["OMIM:600952"],"synonyms":[{"name":"TRANSSEXUALITY","type":"related"}],"termid":"MONDO:0044268","xrefs":{"Monarch":{"xref_id":"0044268"}}}


id: PBO:0073204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semaphorin 3D","termid":"PBO:0073204"}


id: GO:0047091
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysine + NADPH + O2 = N(6)-hydroxy-L-lysine + H2O + NADP+.","definition_xrefs":["EC:1.14.13.59","RHEA:23228"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)","termid":"GO:0016703"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"L-lysine 6-monooxygenase (NADPH) activity","secondary_identifiers":["KEGG_REACTION:R00448","MetaCyc:1.14.13.59-RXN","GO:0008739"],"synonyms":[{"name":"L-lysine 6-monooxygenase activity","type":"exact"},{"name":"L-lysine,NADPH:oxygen oxidoreductase (6-hydroxylating)","type":"related"},{"name":"lysine N(6)-hydroxylase activity","type":"related"},{"name":"lysine N6-hydroxylase activity","type":"exact"}],"termid":"GO:0047091"}


id: MONDO:0043237
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Painful sensations in the tongue, including a sensation of burning.","definition_xrefs":["MESH:D005926"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tongue disorder","termid":"MONDO:0001165"},{"relation_name":"is_a","term_name":"neurological pain disorder","termid":"MONDO:0700057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glossodynia","secondary_identifiers":["SCTID:30731004","icd11.foundation:1755751917","UMLS:C0017672","MEDGEN:6617"],"synonyms":[{"name":"Glossalgias","type":"related"},{"name":"Glossodynias","type":"related"},{"name":"Glossopyroses","type":"related"},{"name":"glossalgia","type":"related"},{"name":"glossodynia","type":"exact"},{"name":"glossopyrosis","type":"related"},{"name":"painful tongue","type":"related"},{"name":"soreness of tongue","type":"related"}],"termid":"MONDO:0043237","xrefs":{"Monarch":{"xref_id":"0043237"}}}


id: SO:0001935
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 20th residue (a lysine), from the start of the H3 protein is tri-methylated.","definition_xrefs":["EBI:nj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_methylation_site","termid":"SO:0001701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3K20_trimethylation_site","synonyms":[{"name":"H3K20 trimethylation site","type":"exact"}],"termid":"SO:0001935"}


id: PBO:0055718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leishmanolysin like peptidase","termid":"PBO:0055718"}


id: MONDO:1011919
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive system disorder, non-human animal","termid":"MONDO:1011354"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"androgen insensitivity syndrome, non-human animal","secondary_identifiers":["OMIA:000991"],"synonyms":[{"name":"AIS","type":"exact"}],"termid":"MONDO:1011919","xrefs":{"Monarch":{"xref_id":"1011919"}}}


id: PBO:0079321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 11","termid":"PBO:0079321"}


id: PBO:0073517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain binding glutamate rich protein like 2","termid":"PBO:0073517"}


id: FYPO:0004837
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing little or no glucose.","definition_xrefs":["PMID:25411338","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002058","FYPO:0000139","FYPO:0002057","FYPO:0005447","FYPO:0000003","FYPO:0002060"],"is_obsolete":false,"name":"abolished cell population growth during glucose starvation","synonyms":[{"name":"abolished cell population growth during glucose depletion","type":"exact"},{"name":"abolished cell population growth during glucose deprivation","type":"exact"},{"name":"abolished cell population growth during glucose limitation","type":"related"},{"name":"abolished growth during glucose starvation","type":"broad"},{"name":"abolished vegetative cell population growth during glucose starvation","type":"exact"},{"name":"cell population growth during glucose starvation abolished","type":"exact"}],"termid":"FYPO:0004837"}


id: GO:0061638
data:
  {"annotated_genes":["SJAG_00768","SJAG_01050","SJAG_00307","SJAG_01745","SJAG_04038","SJAG_02778","SJAG_03126","SJAG_01332","SJAG_00170"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89521,90801,91541,105848,109229,111531,116121,116757],"is_not":false,"summary":null,"term":"GO:0061638"},{"annotations":[101585],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0043505"}]},"cv_name":"cellular_component","definition":"The specialized chromatin located in the centromeric core region or the entire centromeric region in organisms with point centromeres, which is enriched for CENP-A-containing nucleosomes. This chromatin forms a 3-dimensional structure which provides a platform for kinetochore assembly and microtubule attachment.","definition_xrefs":["PMID:24710126","GOC:vw","PMID:20206496","PMID:22729156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin","termid":"GO:0000785"},{"relation_name":"part_of","term_name":"chromosome, centromeric core domain","termid":"GO:0034506"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00170":null,"SJAG_00307":null,"SJAG_00768":null,"SJAG_01050":null,"SJAG_01332":null,"SJAG_01745":null,"SJAG_02778":null,"SJAG_03126":null,"SJAG_04038":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005575","GO:0005694"],"is_obsolete":false,"name":"CENP-A containing chromatin","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1904834"],"synonyms":[{"name":"centromeric core domain chromatin","type":"related"},{"name":"centromeric core region chromatin","type":"exact"},{"name":"chromatin containing CENP-A","type":"exact"},{"name":"nuclear CENP-A containing chromatin","type":"narrow"}],"termid":"GO:0061638","terms_by_termid":{"GO:0043505":null,"GO:0061638":null}}


id: GO:0002262
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of regulating the proliferation and elimination of myeloid cells such that the total number of myeloid cells within a whole or part of an organism is stable over time in the absence of an outside stimulus.","definition_xrefs":["GOC:add","CL:0000763"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system process","termid":"GO:0002376"},{"relation_name":"is_a","term_name":"homeostasis of number of cells","termid":"GO:0048872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myeloid cell homeostasis","termid":"GO:0002262"}


id: PR:O94363
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GTP-binding protein Rheb that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02469","PANTHER:PTHR24070:SF274","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP-binding protein rhb1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC428.16c","secondary_identifiers":["UniProtKB:O94363"],"synonyms":[{"name":"GTP-binding protein Rheb homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-RHEB","type":"exact"}],"termid":"PR:O94363"}


id: GO:0032032
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to the tail region of a myosin I heavy chain.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myosin tail binding","termid":"GO:0032029"},{"relation_name":"is_a","term_name":"myosin I heavy chain binding","termid":"GO:0032037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0008092","GO:0005515"],"is_obsolete":false,"name":"myosin I tail binding","termid":"GO:0032032"}


id: GO:0061080
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the right horn of the sinus venosus from its formation to the mature structure.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"sinus venosus development","termid":"GO:0003235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"right horn of sinus venosus development","termid":"GO:0061080"}


id: GO:0021592
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the fourth ventricle over time, from its formation to the mature structure. The fourth ventricle is an irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space.","definition_xrefs":["GOC:dph","GOC:jid","ISBN:0838580343","GOC:dgh","GO_REF:0000021","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"ventricular system development","termid":"GO:0021591"},{"relation_name":"part_of","term_name":"hindbrain development","termid":"GO:0030902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fourth ventricle development","termid":"GO:0021592"}


id: FYPO:0005413
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell during the first meiotic nuclear division is higher than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level during meiosis","termid":"FYPO:0003611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"increased protein level during meiosis I","synonyms":[{"name":"increased protein accumulation during meiosis I","type":"related"},{"name":"increased protein level during first meiotic nuclear division","type":"exact"}],"termid":"FYPO:0005413"}


id: PBO:0045549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 4","termid":"PBO:0045549"}


id: MONDO:0016916
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete partial deletion of the long arm of chromosome 18 (obsolete MONDO:0016916)","termid":"MONDO:0016916","xrefs":{"Monarch":{"xref_id":"0016916"}}}


id: PBO:0048931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgi phosphoprotein 3","termid":"PBO:0048931"}


id: PBO:0030520
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_RNA_level_during_cellular_response_to_purvalanol_A","termid":"PBO:0030520"}


id: PBO:0116737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stem cell derived angiogenic lncRNA","termid":"PBO:0116737"}


id: GO:0062002
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency or rate of all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity.","definition_xrefs":["PMID:23407971"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity (obsolete GO:0062002)","termid":"GO:0062002"}


id: MONDO:1040007
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare congenital brain disorder characterized by complete or almost near-complete unilateral absence of the cortical cortex, which is filled by a sac of cerebrospinal fluid. The presumed cause is a prenatal vascular disruption with occlusion of the carotid artery territories ipsilateral to the damaged brain.","definition_xrefs":["PMID:23324549"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydranencephaly","termid":"MONDO:0016344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"hemihydranencephaly","secondary_identifiers":["MEDGEN:199609","UMLS:C0751210"],"synonyms":[{"name":"hemi-hydranencephaly","type":"exact"}],"termid":"MONDO:1040007","xrefs":{"Monarch":{"xref_id":"1040007"}}}


id: MONDO:0005587
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete non-Hodgkins lymphoma (obsolete MONDO:0005587)","termid":"MONDO:0005587","xrefs":{"Monarch":{"xref_id":"0005587"}}}


id: PBO:0028930
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_growing_cell_tip","termid":"PBO:0028930"}


id: PBO:0059984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4L pseudogene 4","termid":"PBO:0059984"}


id: GO:0160177
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate which autophagosomes fuse with a vacuole (yeast) or lysosome (e.g. mammals and insects).","definition_xrefs":["PMID:38360932"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of vesicle fusion","termid":"GO:0031340"},{"relation_name":"positively_regulates","term_name":"autophagosome-lysosome fusion","termid":"GO:0061909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"positive regulation of autophagosome-lysosome fusion","termid":"GO:0160177"}


id: PBO:0073661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SINHCAF pseudogene 1","termid":"PBO:0073661"}


id: PBO:0031193
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_double-strand_break_repair","termid":"PBO:0031193"}


id: MONDO:0030067
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Treacher-Collins syndrome","termid":"MONDO:0002457"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"Treacher Collins syndrome 4","secondary_identifiers":["OMIM:618939","MEDGEN:1712280","UMLS:C5394546","DOID:0080792","GARD:16396"],"synonyms":[{"name":"TCS4","type":"exact"},{"name":"TREACHER COLLINS SYNDROME 4","type":"exact"},{"name":"Treacher-Collins syndrome 4","type":"exact"},{"name":"treacher collins syndrome 4","type":"exact"}],"termid":"MONDO:0030067","xrefs":{"Monarch":{"xref_id":"0030067"}}}


id: GO:0009165
data:
  {"annotated_genes":["SJAG_01814","SJAG_04422","SJAG_00694","SJAG_01582","SJAG_01298","SJAG_01352","SJAG_03140","SJAG_04882","SJAG_01859","SJAG_04123","SJAG_04709","SJAG_03114","SJAG_01070","SJAG_04634","SJAG_00133","SJAG_02564","SJAG_03708","SJAG_04845","SJAG_06634","SJAG_00438","SJAG_MIT37","SJAG_01500","SJAG_04665","SJAG_03811","SJAG_04693","SJAG_02874","SJAG_03355","SJAG_04970","SJAG_00542","SJAG_00964","SJAG_04681","SJAG_00985","SJAG_03925","SJAG_00836","SJAG_04627","SJAG_02038","SJAG_04487","SJAG_03946","SJAG_07003","SJAG_02598","SJAG_04122","SJAG_05204","SJAG_01081","SJAG_02889","SJAG_00779","SJAG_04849","SJAG_01566","SJAG_01661","SJAG_00885","SJAG_01937","SJAG_05024","SJAG_00197","SJAG_04657","SJAG_02618","SJAG_04467","SJAG_04354","SJAG_MIT09","SJAG_02887","SJAG_03298","SJAG_00533","SJAG_00957","SJAG_00444","SJAG_MIT15","SJAG_00044","SJAG_02105","SJAG_03164","SJAG_02948","SJAG_02364","SJAG_00915","SJAG_02850","SJAG_04713","SJAG_03771"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78758,80744],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044208"},{"annotations":[64152],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044210"},{"annotations":[73351,58263,65405,66780,78533,57122,71677,60495],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006189"},{"annotations":[59783,57241,61647,62652,59408],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044205"},{"annotations":[73738],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009265"},{"annotations":[73658],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006172"},{"annotations":[57274,75702],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044209"},{"annotations":[82210],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046705"},{"annotations":[69601],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009224"},{"annotations":[65613],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006241"},{"annotations":[69603,92445],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044211"},{"annotations":[106809,91912,94983],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006240"},{"annotations":[96510],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015966"},{"annotations":[72795],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006233"},{"annotations":[81253,71664],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006231"},{"annotations":[70219,72796,91913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006235"},{"annotations":[72794],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006227"},{"annotations":[81276,71663],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006226"},{"annotations":[80369],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006747"},{"annotations":[74604],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009398"},{"annotations":[63868,59782],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006177"},{"annotations":[100716,77410],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032263"},{"annotations":[101763,65611,76671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006183"},{"annotations":[77411,65924],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032264"},{"annotations":[79428,76520,112677],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009435"},{"annotations":[81860,72564],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034355"},{"annotations":[72874,79738,81642],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006741"},{"annotations":[117618],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1905707"},{"annotations":[109188,90116,88480],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019358"},{"annotations":[92755,102564,101343,93346,94336,103207,104557,103181,107457,118698,115447,118704,107365,88591,92328,118692,108355],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042776"},{"annotations":[74184,75633,97219],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006164"},{"annotations":[82209],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006225"},{"annotations":[91447,92446,87906,86908,69602],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044206"},{"annotations":[65612],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006228"},{"annotations":[107834,77412],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032265"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide metabolic process","termid":"GO:0009117"},{"relation_name":"is_a","term_name":"nucleoside phosphate biosynthetic process","termid":"GO:1901293"}],"gene_count":72,"genes_by_uniquename":{"SJAG_00044":null,"SJAG_00133":null,"SJAG_00197":null,"SJAG_00438":null,"SJAG_00444":null,"SJAG_00533":null,"SJAG_00542":null,"SJAG_00694":null,"SJAG_00779":null,"SJAG_00836":null,"SJAG_00885":null,"SJAG_00915":null,"SJAG_00957":null,"SJAG_00964":null,"SJAG_00985":null,"SJAG_01070":null,"SJAG_01081":null,"SJAG_01298":null,"SJAG_01352":null,"SJAG_01500":null,"SJAG_01566":null,"SJAG_01582":null,"SJAG_01661":null,"SJAG_01814":null,"SJAG_01859":null,"SJAG_01937":null,"SJAG_02038":null,"SJAG_02105":null,"SJAG_02364":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_02618":null,"SJAG_02850":null,"SJAG_02874":null,"SJAG_02887":null,"SJAG_02889":null,"SJAG_02948":null,"SJAG_03114":null,"SJAG_03140":null,"SJAG_03164":null,"SJAG_03298":null,"SJAG_03355":null,"SJAG_03708":null,"SJAG_03771":null,"SJAG_03811":null,"SJAG_03925":null,"SJAG_03946":null,"SJAG_04122":null,"SJAG_04123":null,"SJAG_04354":null,"SJAG_04422":null,"SJAG_04467":null,"SJAG_04487":null,"SJAG_04627":null,"SJAG_04634":null,"SJAG_04657":null,"SJAG_04665":null,"SJAG_04681":null,"SJAG_04693":null,"SJAG_04709":null,"SJAG_04713":null,"SJAG_04845":null,"SJAG_04849":null,"SJAG_04882":null,"SJAG_04970":null,"SJAG_05024":null,"SJAG_05204":null,"SJAG_06634":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"nucleotide biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"nucleotide anabolism","type":"exact"},{"name":"nucleotide biosynthesis","type":"exact"},{"name":"nucleotide formation","type":"exact"},{"name":"nucleotide synthesis","type":"exact"}],"termid":"GO:0009165","terms_by_termid":{"GO:0006164":null,"GO:0006172":null,"GO:0006177":null,"GO:0006183":null,"GO:0006189":null,"GO:0006225":null,"GO:0006226":null,"GO:0006227":null,"GO:0006228":null,"GO:0006231":null,"GO:0006233":null,"GO:0006235":null,"GO:0006240":null,"GO:0006241":null,"GO:0006741":null,"GO:0006747":null,"GO:0009224":null,"GO:0009265":null,"GO:0009398":null,"GO:0009435":null,"GO:0015966":null,"GO:0019358":null,"GO:0032263":null,"GO:0032264":null,"GO:0032265":null,"GO:0034355":null,"GO:0042776":null,"GO:0044205":null,"GO:0044206":null,"GO:0044208":null,"GO:0044209":null,"GO:0044210":null,"GO:0044211":null,"GO:0046705":null,"GO:1905707":null}}


id: PATO:0000879
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000879 fecundity value (obsolete PATO:0000879)","termid":"PATO:0000879"}


id: GO:0046492
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving heme b, a Fe(II) porphyrin complex readily isolated from the hemoglobin of beef blood, but also found in other proteins including other hemoglobins, myoglobins, cytochromes P-450, catalases, peroxidases as well as b type cytochromes.","definition_xrefs":["PMID:29414780","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heme metabolic process","termid":"GO:0042168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"heme B metabolic process","synonyms":[{"name":"haem B metabolic process","type":"exact"},{"name":"haem B metabolism","type":"exact"},{"name":"heme B metabolism","type":"exact"},{"name":"protoheme metabolic process","type":"exact"},{"name":"protoheme metabolism","type":"exact"}],"termid":"GO:0046492"}


id: GO:0019743
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of hopanoids, pentacyclic sterol-like compounds based on the hopane nucleus.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triterpenoid catabolic process","termid":"GO:0016105"},{"relation_name":"is_a","term_name":"hopanoid metabolic process","termid":"GO:0019744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"hopanoid catabolic process","synonyms":[{"name":"hopanoid breakdown","type":"exact"},{"name":"hopanoid catabolism","type":"exact"},{"name":"hopanoid degradation","type":"exact"}],"termid":"GO:0019743"}


id: GO:0045966
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving ecdysteroids.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ecdysteroid metabolic process","termid":"GO:0007553"},{"relation_name":"is_a","term_name":"positive regulation of hormone metabolic process","termid":"GO:0032352"},{"relation_name":"is_a","term_name":"positive regulation of steroid metabolic process","termid":"GO:0045940"},{"relation_name":"positively_regulates","term_name":"ecdysteroid metabolic process","termid":"GO:0045455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"positive regulation of ecdysteroid metabolic process","synonyms":[{"name":"activation of ecdysteroid metabolic process","type":"narrow"},{"name":"positive regulation of ecdysteroid metabolism","type":"exact"},{"name":"stimulation of ecdysteroid metabolic process","type":"narrow"},{"name":"up regulation of ecdysteroid metabolic process","type":"exact"},{"name":"up-regulation of ecdysteroid metabolic process","type":"exact"},{"name":"upregulation of ecdysteroid metabolic process","type":"exact"}],"termid":"GO:0045966"}


id: GO:0048151
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The excessive phosphorylation of a protein, as a result of activation of kinases, deactivation of phosphatases, or both.","definition_xrefs":["ISBN:039751820X","GOC:jid","PMID:12859672"],"gene_count":0,"genotype_count":0,"name":"obsolete hyperphosphorylation (obsolete GO:0048151)","synonyms":[{"name":"hyperphosphorylation","type":"exact"}],"termid":"GO:0048151"}


id: PBO:0004754
data:
  {"annotation_feature_type":"gene","cv_name":"DNA_binding_specificity","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"binds TR-BOX 5'-TTCTTTGTT-3'","termid":"PBO:0004754"}


id: MONDO:0013281
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"COG4-CDG is an extremely rare form of CDG syndrome characterized clinically in the single reported case to date by seizures, some dysmorphic features, axial hyponia, slight peripheral hypertonia and hyperreflexia.","definition_xrefs":["Orphanet:263501"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type II","termid":"MONDO:0005501"},{"relation_name":"is_a","term_name":"defect in conserved oligomeric Golgi complex","termid":"MONDO:0017750"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"COG4-congenital disorder of glycosylation","secondary_identifiers":["GARD:12412","SCTID:718751000","MEDGEN:929221","DOID:0070262","UMLS:C4303552","OMIM:613489"],"synonyms":[{"name":"CDG IIj","type":"related"},{"name":"CDG syndrome type IIj","type":"exact"},{"name":"CDG-IIj","type":"exact"},{"name":"CDG2J","type":"exact"},{"name":"COG4-CDG","type":"exact"},{"name":"COG4-CDG (CDG-IIj)","type":"related"},{"name":"COG4-congenital disorder of glycosylation","type":"exact"},{"name":"carbohydrate deficient glycoprotein syndrome type IIj","type":"exact"},{"name":"congenital disorder of glycosylation type 2j","type":"exact"},{"name":"congenital disorder of glycosylation type IIj","type":"exact"},{"name":"congenital disorder of glycosylation, type IIj","type":"related"}],"termid":"MONDO:0013281","xrefs":{"Monarch":{"xref_id":"0013281"}}}


id: GO:0003763
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + H2O = ADP + phosphate. The hydrolysis of ATP involved in maintaining an unfolded polypeptide structure before folding or to entry into mitochondria and chloroplasts.","definition_xrefs":["ISBN:0198547684","EC:3.6.4.9"],"gene_count":0,"genotype_count":0,"name":"obsolete chaperonin ATPase activity (obsolete GO:0003763)","synonyms":[{"name":"chaperonin","type":"exact"},{"name":"chaperonin ATPase activity","type":"exact"}],"termid":"GO:0003763"}


id: PBO:0031905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved transmembrane protein (predicted)","termid":"PBO:0031905"}


id: GO:0048320
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the axial mesoderm. This process pertains to the initial formation of the structure from unspecified parts.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesoderm formation","termid":"GO:0001707"},{"relation_name":"part_of","term_name":"axial mesoderm morphogenesis","termid":"GO:0048319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"axial mesoderm formation","secondary_identifiers":["Reactome:R-HSA-9796292"],"termid":"GO:0048320"}


id: GO:0031042
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form the core 6 O-glycan structure, GlcNAc-beta-(1->6)-GalNAc.","definition_xrefs":["GOC:mah","PMID:10580130","GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete O-glycan processing, core 6 (obsolete GO:0031042)","termid":"GO:0031042"}


id: PBO:0027724
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_vacuole_fusion_during_cellular_hypotonic_response","termid":"PBO:0027724"}


id: PBO:0079337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 22","termid":"PBO:0079337"}


id: FYPO:0000332
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone acetylation occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone acetylation during vegetative growth","termid":"FYPO:0000456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0002494","FYPO:0002274","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased histone acetylation during vegetative growth","synonyms":[{"name":"increased histone acetylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000332"}


id: GO:0051333
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which the reformation of the nuclear membranes during meiosis occurs.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear membrane reassembly","termid":"GO:0031468"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0061024","GO:0007049"],"is_obsolete":false,"name":"meiotic nuclear membrane reassembly","synonyms":[{"name":"meiotic nuclear envelope reassembly","type":"related"}],"termid":"GO:0051333"}


id: GO:1904472
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of endothelin production.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:15560120"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of endothelin production","termid":"GO:1904470"},{"relation_name":"positively_regulates","term_name":"endothelin production","termid":"GO:1990775"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of endothelin production","synonyms":[{"name":"activation of EDN1 secretion","type":"narrow"},{"name":"activation of EDN2 secretion","type":"narrow"},{"name":"activation of EDN3 secretion","type":"narrow"},{"name":"activation of endothelin secretion","type":"narrow"},{"name":"activation of endothelin-1 secretion","type":"narrow"},{"name":"activation of endothelin-2 secretion","type":"narrow"},{"name":"activation of endothelin-3 secretion","type":"narrow"},{"name":"positive regulation of EDN1 secretion","type":"narrow"},{"name":"positive regulation of EDN2 secretion","type":"narrow"},{"name":"positive regulation of EDN3 secretion","type":"narrow"},{"name":"positive regulation of endothelin secretion","type":"narrow"},{"name":"positive regulation of endothelin-1 secretion","type":"narrow"},{"name":"positive regulation of endothelin-2 secretion","type":"narrow"},{"name":"positive regulation of endothelin-3 secretion","type":"narrow"},{"name":"up regulation of EDN1 secretion","type":"narrow"},{"name":"up regulation of EDN2 secretion","type":"narrow"},{"name":"up regulation of EDN3 secretion","type":"narrow"},{"name":"up regulation of endothelin secretion","type":"exact"},{"name":"up regulation of endothelin-1 secretion","type":"narrow"},{"name":"up regulation of endothelin-2 secretion","type":"narrow"},{"name":"up regulation of endothelin-3 secretion","type":"narrow"},{"name":"up-regulation of EDN1 secretion","type":"narrow"},{"name":"up-regulation of EDN2 secretion","type":"narrow"},{"name":"up-regulation of EDN3 secretion","type":"narrow"},{"name":"up-regulation of endothelin secretion","type":"exact"},{"name":"up-regulation of endothelin-1 secretion","type":"narrow"},{"name":"up-regulation of endothelin-2 secretion","type":"narrow"},{"name":"up-regulation of endothelin-3 secretion","type":"narrow"},{"name":"upregulation of EDN1 secretion","type":"narrow"},{"name":"upregulation of EDN2 secretion","type":"narrow"},{"name":"upregulation of EDN3 secretion","type":"narrow"},{"name":"upregulation of endothelin secretion","type":"exact"},{"name":"upregulation of endothelin-1 secretion","type":"narrow"},{"name":"upregulation of endothelin-2 secretion","type":"narrow"},{"name":"upregulation of endothelin-3 secretion","type":"narrow"}],"termid":"GO:1904472"}


id: GO:0046416
data:
  {"annotated_genes":["SJAG_04827","SJAG_02496"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[82156],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019478"},{"annotations":[80733],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036088"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving D-amino acids, the D-enantiomers of amino acids.","definition_xrefs":["GOC:ai","GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"},{"relation_name":"is_a","term_name":"alpha-amino acid metabolic process","termid":"GO:1901605"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02496":null,"SJAG_04827":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"D-amino acid metabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"D-amino acid metabolism","type":"exact"}],"termid":"GO:0046416","terms_by_termid":{"GO:0019478":null,"GO:0036088":null}}


id: GO:0004531
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endonucleolytic cleavage of DNA to 3'-phosphodinucleotide and 3'-phosphooligonucleotide end products.","definition_xrefs":["EC:3.1.22.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA endonuclease activity, producing 3'-phosphomonoesters","termid":"GO:0016889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0140097","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"deoxyribonuclease II activity","secondary_identifiers":["MetaCyc:3.1.22.1-RXN"],"synonyms":[{"name":"DNase II activity","type":"related"},{"name":"acid DNase activity","type":"related"},{"name":"acid deoxyribonuclease activity","type":"related"},{"name":"deoxyribonucleate 3'-nucleotidohydrolase activity","type":"related"},{"name":"lysosomal DNase II activity","type":"narrow"},{"name":"pancreatic DNase II","type":"related"}],"termid":"GO:0004531"}


id: PBO:0063892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class Q","termid":"PBO:0063892"}


id: PBO:0043501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contactin associated protein 2","termid":"PBO:0043501"}


id: GO:0120169
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a cold stimulus is received and converted into a molecular signal as part of thermoception.","definition_xrefs":["PMID:21335241"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of temperature stimulus involved in thermoception","termid":"GO:0050960"},{"relation_name":"part_of","term_name":"sensory perception of cold stimulus","termid":"GO:0062035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of cold stimulus involved in thermoception","synonyms":[{"name":"sensory detection of cold stimulus during thermoception","type":"exact"},{"name":"sensory transduction of cold stimulus during thermoception","type":"exact"},{"name":"thermoception, sensory detection of cold stimulus","type":"exact"},{"name":"thermoception, sensory transduction of cold stimulus","type":"exact"}],"termid":"GO:0120169"}


id: MONDO:1010045
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Diprosopus that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of development or morphogenesis, non-human animal","termid":"MONDO:1011313"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diprosopus, non-human animal","secondary_identifiers":["OMIA:000290"],"termid":"MONDO:1010045","xrefs":{"Monarch":{"xref_id":"1010045"}}}


id: GO:0018180
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The removal of a sulfur group from a protein amino acid.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete protein desulfurization (obsolete GO:0018180)","synonyms":[{"name":"protein amino acid desulfurisation","type":"exact"},{"name":"protein amino acid desulfurization","type":"exact"},{"name":"protein amino acid desulphurisation","type":"exact"},{"name":"protein amino acid desulphurization","type":"exact"}],"termid":"GO:0018180"}


id: PBO:0044692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDRGK domain containing 1","termid":"PBO:0044692"}


id: GO:0021552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the midbrain-hindbrain boundary structure. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate.","definition_xrefs":["GOC:jid","GO_REF:0000021","PMID:15541513","GOC:cls","GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure arrangement","termid":"GO:0048532"},{"relation_name":"part_of","term_name":"midbrain-hindbrain boundary morphogenesis","termid":"GO:0021555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"midbrain-hindbrain boundary structural organization","synonyms":[{"name":"MHB structural organization","type":"exact"},{"name":"isthmus structural organization","type":"related"},{"name":"midbrain-hindbrain boundary structural organisation","type":"exact"}],"termid":"GO:0021552"}


id: GO:0019706
data:
  {"annotated_genes":["SJAG_04451","SJAG_00895","SJAG_01112","SJAG_01299"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[69530,72806,74695,76799],"is_not":false,"summary":null,"term":"GO:0019706"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a palmitoyl (systematic name, hexadecanoyl) group to a sulfur atom on the cysteine of a protein molecule, in the reaction hexadecanoyl-CoA + L-cysteinyl-[protein] = CoA + S-hexadecanoyl-L-cysteinyl-[protein].","definition_xrefs":["GOC:pr","RHEA:36683","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"palmitoyltransferase activity","termid":"GO:0016409"},{"relation_name":"is_a","term_name":"protein-cysteine S-acyltransferase activity","termid":"GO:0019707"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00895":null,"SJAG_01112":null,"SJAG_01299":null,"SJAG_04451":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016746","GO:0140096","GO:0003674"],"is_obsolete":false,"name":"protein-cysteine S-palmitoyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-9694341","Reactome:R-HSA-203567","Reactome:R-HSA-5682084","EC:2.3.1.225","Reactome:R-HSA-9021072","Reactome:R-HSA-9647982","Reactome:R-HSA-9829047","Reactome:R-HSA-9830875"],"synonyms":[{"name":"protein-cysteine S-palmitoleyltransferase activity","type":"related"}],"termid":"GO:0019706","terms_by_termid":{"GO:0019706":null}}


id: GO:0021846
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The creation of greater cell numbers in the forebrain due to cell division of progenitor cells.","definition_xrefs":["GO_REF:0000021","GOC:dgh","GOC:dph","GOC:jid","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural precursor cell proliferation","termid":"GO:0061351"},{"relation_name":"part_of","term_name":"forebrain development","termid":"GO:0030900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell proliferation in forebrain","termid":"GO:0021846"}


id: GO:0035189
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multiprotein complex containing a heterodimeric E2F transcription factor and a Retinoblastoma (Rb) family member. This complex is capable of repressing transcription of E2F-regulated genes in order to regulate cell cycle progression.","definition_xrefs":["PMID:14616073"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulator complex","termid":"GO:0090575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"Rb-E2F complex","synonyms":[{"name":"retinoblastoma-E2F complex","type":"exact"}],"termid":"GO:0035189"}


id: FYPO:0005818
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the neddylation of one or more specific proteins, or of specific protein sites, is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein modification during vegetative growth","termid":"FYPO:0000549"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal protein neddylation","synonyms":[{"name":"normal protein neddylation during mitotic cell cycle","type":"related"},{"name":"normal protein neddylation during vegetative growth","type":"exact"},{"name":"normal protein/peptide neddylation","type":"exact"}],"termid":"FYPO:0005818"}


id: MOD:00807
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to pyruvic acid.","definition_xrefs":["DeltaMass:23","PubMed:3042771","Unimod:385#S","PubMed:8464063","RESID:AA0127#SER","PubMed:10085076"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"},{"relation_name":"is_a","term_name":"pyruvic acid","termid":"MOD:01154"},{"relation_name":"is_a","term_name":"deaminated residue","termid":"MOD:01160"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvic acid (Ser)","synonyms":[{"name":"2-oxopropanoic acid","type":"exact"},{"name":"MOD_RES Pyruvic acid (Ser)","type":"exact"},{"name":"Pyruvate","type":"exact"},{"name":"Pyruvoyl- (Serine)","type":"exact"},{"name":"pyruvic acid","type":"exact"}],"termid":"MOD:00807"}


id: GO:1902404
data:
  {"annotated_genes":["SJAG_03936","SJAG_03703","SJAG_00845","SJAG_03631","SJAG_01894","SJAG_03379","SJAG_04776","SJAG_02431","SJAG_04498","SJAG_01665","SJAG_04597","SJAG_04887","SJAG_03581","SJAG_04077","SJAG_02700","SJAG_00268"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[58747,87715,94785,97157,97537,98408,100219,100450,101949,111893],"is_not":false,"summary":null,"term":"GO:1902404"},{"annotations":[103225],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1903472"},{"annotations":[93892,94069,112953,110099,86978],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1903473"}]},"cv_name":"biological_process","definition":"Any actomyosin contractile ring contraction that is involved in mitotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actomyosin contractile ring contraction","termid":"GO:0000916"},{"relation_name":"is_a","term_name":"mitotic cytokinetic process","termid":"GO:1902410"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00268":null,"SJAG_00845":null,"SJAG_01665":null,"SJAG_01894":null,"SJAG_02431":null,"SJAG_02700":null,"SJAG_03379":null,"SJAG_03581":null,"SJAG_03631":null,"SJAG_03703":null,"SJAG_03936":null,"SJAG_04077":null,"SJAG_04498":null,"SJAG_04597":null,"SJAG_04776":null,"SJAG_04887":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0000281"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0030036","GO:0008150","GO:0007049","GO:0007010","GO:0000281"],"is_obsolete":false,"name":"mitotic actomyosin contractile ring contraction","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"contractile ring contraction involved in cell cycle cytokinesis involved in mitotic cell cycle","type":"exact"},{"name":"cytokinesis, actomyosin ring contraction involved in mitotic cell cycle","type":"exact"},{"name":"mitotic actomyosin contractile ring constriction","type":"exact"}],"termid":"GO:1902404","terms_by_termid":{"GO:1902404":null,"GO:1903472":null,"GO:1903473":null}}


id: PBO:0046136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 5A2","termid":"PBO:0046136"}


id: PBO:0057121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 205","termid":"PBO:0057121"}


id: GO:0055080
data:
  {"annotated_genes":["SJAG_03631","SJAG_04955","SJAG_01353","SJAG_00136","SJAG_04743","SJAG_03793","SJAG_03879","SJAG_04760","SJAG_04584","SJAG_02457","SJAG_02470","SJAG_00212","SJAG_02019","SJAG_00822","SJAG_02847","SJAG_02474","SJAG_01694","SJAG_04167","SJAG_04892","SJAG_02240","SJAG_00532","SJAG_00916","SJAG_00923","SJAG_01078","SJAG_02834","SJAG_01913","SJAG_02532","SJAG_01803","SJAG_04185","SJAG_03401","SJAG_04616","SJAG_04757","SJAG_00792","SJAG_03516","SJAG_00328","SJAG_04675","SJAG_01129","SJAG_02968","SJAG_04258","SJAG_01004","SJAG_04677","SJAG_03528","SJAG_04031","SJAG_01400","SJAG_04032","SJAG_02578","SJAG_03866","SJAG_00802","SJAG_04698","SJAG_02735","SJAG_00301","SJAG_01817","SJAG_03850","SJAG_02716","SJAG_00668","SJAG_01007","SJAG_02883","SJAG_01669","SJAG_03962","SJAG_00516","SJAG_02023","SJAG_04867","SJAG_00605","SJAG_04111","SJAG_04096","SJAG_02399","SJAG_04403","SJAG_05294","SJAG_03862","SJAG_04607","SJAG_01541","SJAG_00222","SJAG_01990","SJAG_01397","SJAG_01435","SJAG_03667","SJAG_04028","SJAG_02080"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112384,100004,93588,59554,79495],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010106"},{"annotations":[72546],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032468"},{"annotations":[72842,112951,75274,80195,82019,75354,76931,97615,75420,73196,99430,118202,74179,71874,81972,108365],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006874"},{"annotations":[107408,92610,99675,79821,76810],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006878"},{"annotations":[77527,76040,59207,76811,91778,72923,93534,79962,103789,79822],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006879"},{"annotations":[72058,76253],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010961"},{"annotations":[75456,77525],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030026"},{"annotations":[94932,73982,79880,99431,72424],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030007"},{"annotations":[103844,103103,75944,77678,94212,80090,103704,113941,74561,78968,99676,76507],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006882"},{"annotations":[103315],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033212"},{"annotations":[112802],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098711"},{"annotations":[57632],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010960"},{"annotations":[75177],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0055075"},{"annotations":[79493,91923],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033215"},{"annotations":[100030],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030641"},{"annotations":[79698,73158,67940,74974,72556],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051453"},{"annotations":[71068,62566,62894],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033214"},{"annotations":[101163,95325,99530,75844,74541,74804,87487,80298,72651,81837,103439,95145],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007035"}]},"cv_name":"biological_process","definition":"Any process involved in the maintenance of an internal steady state of monoatomic cations within an organism or cell. 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id: MONDO:0008740
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Agnathia-holoprosencephaly-situs inversus syndrome is an extremely rare and fatal association syndrome, characterized by absence of the mandible, cerebral malformations with facial anomalies related to a defect in cleavage in the embryonic brain (e.g. synophthalmia, malformed and low-set ears fused in midline (otocephaly), agenesis of the olfactory bulbs, microstomia, hypoglossia/aglossia) and situs inversus partialis or totalis.","definition_xrefs":["Orphanet:990"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"agnathia-otocephaly complex","secondary_identifiers":["SCTID:48180002","ICD9:759.89","OMIM:202650","UMLS:C0265242","NCIT:C124568","GARD:9126","DOID:0060341","MEDGEN:78541"],"synonyms":[{"name":"AGOTC","type":"related"},{"name":"Dysgnathia Complex agnathia-holoprosencephaly","type":"related"},{"name":"agnathia-holoprosencephaly","type":"related"},{"name":"agnathia-holoprosencephaly-situs inversus syndrome","type":"exact"},{"name":"agnathia-otocephaly complex","type":"exact"},{"name":"dysgnathia complex agnathia-holoprosencephaly","type":"exact"},{"name":"holoprosencephaly-agnathia","type":"exact"},{"name":"otocephaly","type":"exact"}],"termid":"MONDO:0008740","xrefs":{"Monarch":{"xref_id":"0008740"}}}


id: GO:1990452
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ubiquitin ligase complex containing Parkin (PARK2), the F-box protein FBXW7 (also called SEL-10) and a cullin from the Cul1 subfamily; substrate specificity is conferred by the F-box protein.","definition_xrefs":["GOC:PARL","GOC:bf","PMID:12628165"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin ligase complex","termid":"GO:0000151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Parkin-FBXW7-Cul1 ubiquitin ligase complex","synonyms":[{"name":"PRKN-FBXW7-Cul1 complex","type":"exact"},{"name":"Park2-FBXW7-Cul1 complex","type":"exact"},{"name":"Parkin-FBXW7-Cul1 protein complex","type":"exact"},{"name":"Parkin-HSel-10-Cullin-1 complex","type":"narrow"},{"name":"Parkin/Cul1/F-box protein complex","type":"exact"}],"termid":"GO:1990452"}


id: MONDO:0013984
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive nonsyndromic deafness in which the cause of the disease is a mutation in the OTOGL gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0019497"],"is_obsolete":false,"name":"autosomal recessive nonsyndromic hearing loss 84B","secondary_identifiers":["UMLS:C3554159","GARD:22647","DOID:0110530","MEDGEN:767073","OMIM:614944"],"synonyms":[{"name":"DFNB84B","type":"narrow"},{"name":"OTOGL autosomal recessive nonsyndromic deafness","type":"narrow"},{"name":"autosomal recessive deafness 84B","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness 84B","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness caused by mutation in OTOGL","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness type 84B","type":"narrow"},{"name":"autosomal recessive nonsyndromic hearing loss 84B","type":"exact"},{"name":"deafness, autosomal recessive 84B","type":"narrow"},{"name":"deafness, autosomal recessive 84b","type":"narrow"},{"name":"deafness, autosomal recessive type 84B","type":"narrow"}],"termid":"MONDO:0013984","xrefs":{"Monarch":{"xref_id":"0013984"}}}


id: GO:0061307
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a cardiac neural crest cell that will migrate to the heart and contribute to its development. Cardiac neural crest cells are specialized cells that migrate toward the heart from the third, fourth and sixth pharyngeal arches.","definition_xrefs":["GOC:mtg_heart","GOC:dph","PMID:19705442"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural crest cell differentiation","termid":"GO:0014033"},{"relation_name":"is_a","term_name":"cardiocyte differentiation","termid":"GO:0035051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac neural crest cell differentiation involved in heart development","termid":"GO:0061307"}


id: PBO:0070484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L5 pseudogene 19","termid":"PBO:0070484"}


id: GO:0043290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of apocarotenoids, a class of compounds derived from the oxidative cleavage of carotenoids, many of which are biologically important e.g. retinal and abscisic acid.","definition_xrefs":["PMID:33721905","PMID:34956282","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid catabolic process","termid":"GO:0008300"},{"relation_name":"is_a","term_name":"apocarotenoid metabolic process","termid":"GO:0043288"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"apocarotenoid catabolic process","synonyms":[{"name":"apo carotenoid catabolic process","type":"exact"},{"name":"apocarotenoid breakdown","type":"exact"},{"name":"apocarotenoid catabolism","type":"exact"},{"name":"apocarotenoid degradation","type":"exact"}],"termid":"GO:0043290"}


id: PBO:0039394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AMZ2 pseudogene 3","termid":"PBO:0039394"}


id: SO:0005857
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tRNA sequence that has a selenocysteine anticodon, and a 3' selenocysteine binding region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"selenocysteine_tRNA_primary_transcript","termid":"SO:0005856"},{"relation_name":"is_a","term_name":"tRNA","termid":"SO:0000253"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenocysteinyl_tRNA","synonyms":[{"name":"selenocysteinyl tRNA","type":"exact"},{"name":"selenocysteinyl-transfer RNA","type":"exact"},{"name":"selenocysteinyl-transfer ribonucleic acid","type":"exact"}],"termid":"SO:0005857"}


id: PBO:0003962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRR1 family protein","termid":"PBO:0003962"}


id: PBO:0000411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prefoldin subunit 4 (predicted)","termid":"PBO:0000411"}


id: MONDO:0004326
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that arises from the ciliated respiratory mucosa that lines the sphenoid sinus. It results from the invagination and proliferation of epithelial cells in the underlying stroma.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inverted papilloma","termid":"MONDO:0002537"},{"relation_name":"is_a","term_name":"sphenoid sinus Schneiderian papilloma","termid":"MONDO:0004327"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphenoid sinus inverted papilloma","secondary_identifiers":["DOID:7678","NCIT:C6841","UMLS:C1336037","MEDGEN:236834"],"synonyms":[{"name":"inverted papilloma of sphenoid sinus","type":"exact"},{"name":"inverted papilloma of the sphenoid sinus","type":"exact"},{"name":"sphenoidal sinus inverted papilloma","type":"exact"}],"termid":"MONDO:0004326","xrefs":{"Monarch":{"xref_id":"0004326"}}}


id: GO:0160061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A homeostatic process by which the sensing of CO2 and/or H+ by the brain leads to appropriate altering in breathing to regulate blood gas and tissue pH.","definition_xrefs":["PMID:26068853"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal-level homeostasis","termid":"GO:0048871"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"respiratory chemosensitivity","termid":"GO:0160061"}


id: PR:Q9Y7M8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC9B6.11c gene.","definition_xrefs":["UniProtKB:Q9Y7M8","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA exonuclease C9B6.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC9B6.11c","synonyms":[{"name":"Spom972h-SPBC9B6.11c","type":"exact"}],"termid":"PR:Q9Y7M8"}


id: MONDO:0957530
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"breast-ovarian cancer, familial, susceptibility to","termid":"MONDO:0100526"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast-ovarian cancer, familial, susceptibility to, 5","secondary_identifiers":["MEDGEN:1841251","OMIM:620442","UMLS:C5830615"],"termid":"MONDO:0957530","xrefs":{"Monarch":{"xref_id":"0957530"}}}


id: MONDO:0006789
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Abnormally high level of amylase in the blood.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hematologic disorder","termid":"MONDO:0005570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"hyperamylasemia","secondary_identifiers":["MESH:D034321","MedDRA:10062777","MEDGEN:105401","EFO:1000969","UMLS:C0476327"],"termid":"MONDO:0006789","xrefs":{"Monarch":{"xref_id":"0006789"}}}


id: PBO:0061883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OPA1 mitochondrial dynamin like GTPase","termid":"PBO:0061883"}


id: SO:0000737
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"DNA belonging to the genome of a mitochondria.","direct_ancestors":[{"relation_name":"is_a","term_name":"organelle_sequence","termid":"SO:0000736"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial_sequence","synonyms":[{"name":"mitochondrial sequence","type":"exact"}],"termid":"SO:0000737"}


id: FYPO:0003515
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of L-selenoneine measured in a cell is too low to detect.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substance absent from cell","termid":"FYPO:0001888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"L-selenoneine absent from cell","termid":"FYPO:0003515"}


id: SO:0002112
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A protein coding transcript containing a retained intron.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein_coding_primary_transcript","termid":"SO:0000120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coding_transcript_with_retained_intron","synonyms":[{"name":"mRNA with retained intron","type":"related"}],"termid":"SO:0002112"}


id: MONDO:1010825
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Syndactyly that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndactyly, non-human animal","termid":"MONDO:1010160"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndactyly, dog","secondary_identifiers":["OMIA:000963-9615"],"termid":"MONDO:1010825","xrefs":{"Monarch":{"xref_id":"1010825"}}}


id: PBO:0078556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 44","termid":"PBO:0078556"}


id: MONDO:0020323
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A large B-cell non-Hodgkin lymphoma arising in the mediastinum. Morphologically it is characterized by a massive diffuse lymphocytic proliferation associated with compartmentalizing fibrosis. Response to intensive chemotherapy, with or without radiotherapy, is usually good. (WHO, 2001)","definition_xrefs":["NCIT:C9280"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thymus lymphoma","termid":"MONDO:0000951"},{"relation_name":"is_a","term_name":"diffuse large B-cell lymphoma","termid":"MONDO:0018905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0004992","MONDO:0005570"],"is_obsolete":false,"name":"primary mediastinal large B-cell lymphoma","secondary_identifiers":["ICDO:9679/3","DOID:0080210","icd11.foundation:950282079","ONCOTREE:PMBL","UMLS:C1292754","MedDRA:10036710","MEDGEN:714984","GARD:19589","Orphanet:98838","SCTID:444910004"],"synonyms":[{"name":"B-cell diffuse large cell lymphoma of mediastinum","type":"exact"},{"name":"B-cell diffuse large cell lymphoma of the mediastinum","type":"exact"},{"name":"Med-DLBCL","type":"exact"},{"name":"PMBL","type":"exact"},{"name":"PMLCL","type":"exact"},{"name":"large cell lymphoma of the mediastinum","type":"exact"},{"name":"mediastinal (thymic) large B-cell lymphoma","type":"exact"},{"name":"mediastinal B-cell diffuse large cell lymphoma","type":"exact"},{"name":"mediastinal diffuse large cell lymphoma with sclerosis","type":"exact"},{"name":"mediastinal diffuse large-cell lymphoma with sclerosis","type":"exact"},{"name":"mediastinal large B-cell lymphoma","type":"exact"},{"name":"primary mediastinal (thymic) large B-cell lymphoma","type":"related"},{"name":"primary mediastinal B-cell lymphoma","type":"related"},{"name":"primary mediastinal clear cell lymphoma of B-cell type","type":"exact"},{"name":"primary mediastinal large B-cell lymphoma","type":"exact"}],"termid":"MONDO:0020323","xrefs":{"Monarch":{"xref_id":"0020323"}}}


id: GO:0002054
data:
  {"annotated_genes":["SJAG_01859"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75703],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002055"}]},"cv_name":"molecular_function","definition":"Binding to a nucleobase, any of a class of pyrmidines or purines, organic nitrogenous bases.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterocyclic compound binding","termid":"GO:1901363"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01859":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"nucleobase binding","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0002054","terms_by_termid":{"GO:0002055":null}}


id: PATO:0001796
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A coiling which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"coiled","termid":"PATO:0000404"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased coiling","synonyms":[{"name":"low coiling","type":"exact"}],"termid":"PATO:0001796"}


id: PBO:0001693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monothiol glutaredoxin Grx5","termid":"PBO:0001693"}


id: MONDO:0008000
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"migraine with or without aura, susceptibility to","termid":"MONDO:0100246"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"migraine with or without aura, susceptibility to, 1","secondary_identifiers":["ICD9:346.80","OMIM:157300","SCTID:37796009","UMLS:C3887485","MEDGEN:854348","ICD9:346.90"],"synonyms":[{"name":"Mgau","type":"related"},{"name":"Mgr1","type":"related"},{"name":"migraine","type":"related"},{"name":"migraine with or without aura, susceptibility to, 1","type":"exact"},{"name":"migraine with or without aura, susceptibility to, type 1","type":"exact"},{"name":"migraine without aura, susceptibility to","type":"exact"},{"name":"migraine, resistance to","type":"exact"},{"name":"migraine, susceptibility to","type":"exact"}],"termid":"MONDO:0008000","xrefs":{"Monarch":{"xref_id":"0008000"}}}


id: GO:0051011
data:
  {"annotated_genes":["SJAG_03835","SJAG_02609"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72911,73341],"is_not":false,"summary":null,"term":"GO:0051011"}]},"cv_name":"molecular_function","definition":"Binding to the minus end of a microtubule.","definition_xrefs":["PMID:14557818","PMID:14614826","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule binding","termid":"GO:0008017"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02609":null,"SJAG_03835":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008017"},{"rel_name":"is_a","termid":"GO:0008092"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674","GO:0008017","GO:0008092"],"is_obsolete":false,"name":"microtubule minus-end binding","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0051011","terms_by_termid":{"GO:0051011":null}}


id: GO:0072334
data:
  {"annotated_genes":["SJAG_04162","SJAG_01177","SJAG_04697"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77768],"is_not":false,"summary":null,"term":"GO:0072334"},{"annotations":[87823,76618],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097624"}]},"cv_name":"biological_process","definition":"The process in which UDP-galactose is transported across a membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"},{"relation_name":"is_a","term_name":"pyrimidine nucleotide-sugar transmembrane transport","termid":"GO:0090481"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01177":null,"SJAG_04162":null,"SJAG_04697":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"UDP-galactose transmembrane transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0015785"],"synonyms":[{"name":"UDP-galactose membrane transport","type":"exact"},{"name":"UDP-galactose transport","type":"related"}],"termid":"GO:0072334","terms_by_termid":{"GO:0072334":null,"GO:0097624":null}}


id: PBO:0089412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino acid transmembrane transporter","termid":"PBO:0089412"}


id: PBO:0074873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 56","termid":"PBO:0074873"}


id: MONDO:0012928
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant spastic paraplegia type 42 is a pure form of hereditary spastic paraplegia characterized by slowly progressive spastic paraplegia of lower extremities with an age of onset ranging from childhood to adulthood and patients presenting with spastic gait, increased tendon reflexes in lower limbs, extensor plantar response, weakness and atrophy of lower limb muscles and, in rare cases, pes cavus. No abnormalities are noted on magnetic resonance imaging.","definition_xrefs":["Orphanet:171863"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pure hereditary spastic paraplegia","termid":"MONDO:0015149"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"hereditary spastic paraplegia 42","secondary_identifiers":["UMLS:C2675528","OMIM:612539","SCTID:763070001","DOID:0110794","MESH:C567262","GARD:17073","MEDGEN:393407"],"synonyms":[{"name":"SLC33A1 autosomal dominant pure spastic paraplegia","type":"exact"},{"name":"SPG42","type":"exact"},{"name":"autosomal dominant pure spastic paraplegia caused by mutation in SLC33A1","type":"exact"},{"name":"autosomal dominant spastic paraplegia 42","type":"exact"},{"name":"autosomal dominant spastic paraplegia type 42","type":"exact"},{"name":"hereditary spastic paraplegia type 42","type":"exact"},{"name":"spastic paraplegia 42, autosomal dominant","type":"related"}],"termid":"MONDO:0012928","xrefs":{"Monarch":{"xref_id":"0012928"}}}


id: PATO:0002076
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A behavioral quality inhering in a bearer by virtue of the bearer's movement.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"behavioral quality","termid":"PATO:0000186"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"movement behavioral quality","synonyms":[{"name":"movement behavioural quality","type":"exact"}],"termid":"PATO:0002076"}


id: MONDO:0032656
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microcephaly, cataracts, impaired intellectual development, and dystonia with abnormal striatum","secondary_identifiers":["MEDGEN:1648355","OMIM:618284","UMLS:C4748984"],"synonyms":[{"name":"MCIDDS","type":"related"},{"name":"MICROCEPHALY, CATARACTS, IMPAIRED INTELLECTUAL DEVELOPMENT, AND DYSTONIA WITH ABNORMAL STRIATUM","type":"related"}],"termid":"MONDO:0032656","xrefs":{"Monarch":{"xref_id":"0032656"}}}


id: PBO:0034612
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_cell_periphery","termid":"PBO:0034612"}


id: FYPO:0005582
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the cell contains monoacylglycerol phosphates (also called lysophospholipids) that have normal length fatty acid chain residues.","definition_xrefs":["PMID:27053105","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative phenotype","termid":"FYPO:0001312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal monoacylglycerol phosphate chain length","synonyms":[{"name":"normal lysophospholipid chain length","type":"exact"},{"name":"normal lysophospholipid fatty acid chain length","type":"exact"},{"name":"normal monoacylglycerol phosphate chain length during mitotic cell cycle","type":"related"},{"name":"normal monoacylglycerol phosphate chain length during vegetative growth","type":"exact"},{"name":"normal monoacylglycerol phosphate fatty acid chain length","type":"exact"}],"termid":"FYPO:0005582"}


id: MONDO:0017723
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A Sandhoff disease that occurs in an adult.","definition_xrefs":["MONDO:design_pattern"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Sandhoff disease","termid":"MONDO:0010006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002561"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0002561","MONDO:0002039","MONDO:0005066","MONDO:0005559","MONDO:0005244","MONDO:0005328"],"is_obsolete":false,"name":"Sandhoff disease, adult form","secondary_identifiers":["Orphanet:309169","SCTID:238020001","UMLS:C0751489","MEDGEN:148319","GARD:17405"],"synonyms":[{"name":"Hexosaminidases A and B deficiency, adult form","type":"exact"},{"name":"Sandhoff disease of adults","type":"exact"},{"name":"adult GM2 gangliosidosis 0 variant","type":"exact"},{"name":"adult Sandhoff disease","type":"exact"}],"termid":"MONDO:0017723","xrefs":{"Monarch":{"xref_id":"0017723"}}}


id: GO:0044033
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves more than one organism.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism metabolic process (obsolete GO:0044033)","synonyms":[{"name":"multi-organism metabolism","type":"exact"},{"name":"multi-organismal metabolic process","type":"exact"},{"name":"multi-organismal metabolism","type":"exact"}],"termid":"GO:0044033"}


id: MONDO:0018786
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pontine autosomal dominant microangiopathy with leukoencephalopathy (obsolete MONDO:0018786)","termid":"MONDO:0018786","xrefs":{"Monarch":{"xref_id":"0018786"}}}


id: GO:0046940
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of introducing one or more phosphate groups into a nucleoside monophosphate to produce a polyphosphorylated nucleoside.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate metabolic process","termid":"GO:0009123"},{"relation_name":"is_a","term_name":"nucleotide biosynthetic process","termid":"GO:0009165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"nucleoside monophosphate phosphorylation","termid":"GO:0046940"}


id: GO:0052373
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism stops, prevents, or reduces the frequency, rate or extent to which it enters into a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"defense response to symbiont","termid":"GO:0140546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"suppression of symbiont entry into host","synonyms":[{"name":"down regulation by organism of entry into other organism during symbiotic interaction","type":"related"},{"name":"down-regulation by organism of entry into other organism during symbiotic interaction","type":"related"},{"name":"downregulation by organism of entry into other organism during symbiotic interaction","type":"related"},{"name":"inhibition by organism of entry into other organism during symbiotic interaction","type":"narrow"},{"name":"negative regulation by organism of entry into other organism during symbiotic interaction","type":"related"},{"name":"negative regulation by organism of entry into other organism involved in symbiotic interaction","type":"broad"},{"name":"suppression of symbiont entry into host by host","type":"exact"}],"termid":"GO:0052373"}


id: MONDO:0014009
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal recessive congenital ichthyosis characterized by fine whitish scales, moderate to severe erythroderma, compact hyperkeratosis, hypergranulosis, acanthosis, and papillomatosis that has material basis in variation in the chromosome region 12p11.2-q13.1.","definition_xrefs":["DOID:0060716","PMID:16117785"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital non-bullous ichthyosiform erythroderma","termid":"MONDO:0019306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive congenital ichthyosis 7","secondary_identifiers":["MEDGEN:767262","UMLS:C3554348","GARD:15895","OMIM:615022"],"synonyms":[{"name":"ARCI7","type":"exact"},{"name":"autosomal recessive congenital ichthyosis type 7","type":"exact"},{"name":"ichthyosis, congenital, autosomal recessive 7","type":"related"}],"termid":"MONDO:0014009","xrefs":{"Monarch":{"xref_id":"0014009"}}}


id: PBO:0071239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 80","termid":"PBO:0071239"}


id: PBO:0059520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4","termid":"PBO:0059520"}


id: MONDO:0001124
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete filariasis (obsolete MONDO:0001124)","termid":"MONDO:0001124","xrefs":{"Monarch":{"xref_id":"0001124"}}}


id: PBO:0088625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial aspartate aminotransferase Maa1","termid":"PBO:0088625"}


id: PBO:0064799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 catalytic subunit alpha","termid":"PBO:0064799"}


id: PBO:0040611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAIAP2 divergent transcript","termid":"PBO:0040611"}


id: PR:O74378
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 2-oxoglutarate dehydrogenase E1 component that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-oxoglutarate dehydrogenase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3H7.03c","secondary_identifiers":["UniProtKB:O74378"],"synonyms":[{"name":"2-oxoglutarate dehydrogenase complex component E1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"OGDC-E1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPBC3H7.03c","type":"related"},{"name":"Spom972h-sucA","type":"exact"},{"name":"alpha-ketoglutarate dehydrogenase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74378"}


id: PR:P78798
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peroxisomal targeting signal 2 receptor that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR22850:SF4","PRO:DNx","OMA:SCHPO01952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisomal targeting signal 2 receptor (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17D4.01","secondary_identifiers":["UniProtKB:P78798"],"synonyms":[{"name":"PTS2 receptor (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PEX7","type":"exact"},{"name":"peroxin-7 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P78798"}


id: GO:0120136
data:
  {"annotated_genes":["SJAG_04657"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[117647],"is_not":false,"summary":null,"term":"GO:0120136"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + dUMP = ADP + dUDP.","definition_xrefs":["RHEA:30655","PMID:3010881"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxynucleoside phosphate kinase activity, ATP as phosphate donor","termid":"GO:0047507"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04657":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016301","GO:0003674"],"is_obsolete":false,"name":"dUMP kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ATP:dUMP phosphotransferase activity","type":"exact"},{"name":"dUMP-kinase activity","type":"exact"},{"name":"deoxyuridine monophosphate kinase activity","type":"exact"}],"termid":"GO:0120136","terms_by_termid":{"GO:0120136":null}}


id: PBO:0004234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-1,2-mannosyltransferase Omh1","termid":"PBO:0004234"}


id: PBO:0060507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleosome assembly protein 1 like 6, pseudogene","termid":"PBO:0060507"}


id: PBO:0040814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BICD family like 3, pseudogene","termid":"PBO:0040814"}


id: PBO:0030903
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_level_of_substance_in_cell_during_vegetative_growth","termid":"PBO:0030903"}


id: MONDO:0003291
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign smooth muscle neoplasm arising from the arrector pili muscle, tunica media of blood vessels, and dartos muscle of the genitalia. It is characterized by the presence of spindle cells with cigar-shaped nuclei, interlacing fascicles, and a whorled pattern.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leiomyoma","termid":"MONDO:0001572"},{"relation_name":"is_a","term_name":"dermis tumor","termid":"MONDO:0002300"},{"relation_name":"is_a","term_name":"benign neoplasm of skin","termid":"MONDO:0021440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"leiomyoma cutis","secondary_identifiers":["DOID:5132","UMLS:C0346064","SCTID:254767008","MEDGEN:87533","NCIT:C4482"],"synonyms":[{"name":"cutaneous (skin) leiomyoma","type":"exact"},{"name":"cutaneous leiomyoma","type":"exact"},{"name":"leiomyoma cutis","type":"exact"},{"name":"leiomyoma of skin","type":"exact"},{"name":"leiomyoma of the skin","type":"exact"},{"name":"leiomyoma of zone of skin","type":"exact"},{"name":"skin leiomyoma","type":"exact"},{"name":"zone of skin leiomyoma","type":"exact"}],"termid":"MONDO:0003291","xrefs":{"Monarch":{"xref_id":"0003291"}}}


id: MONDO:0015418
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete lateral facial cleft (obsolete MONDO:0015418)","secondary_identifiers":["Orphanet:141269"],"synonyms":[{"name":"Tessier number 7 facial cleft","type":"exact"},{"name":"transverse facial cleft","type":"exact"}],"termid":"MONDO:0015418","xrefs":{"Monarch":{"xref_id":"0015418"}}}


id: GO:0098599
data:
  {"annotated_genes":["SJAG_02056","SJAG_00734","SJAG_00774","SJAG_02268","SJAG_03377"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[62103,92991,100456,71705,82115],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008474"}]},"cv_name":"molecular_function","definition":"Catalysis of a hydrolase reaction that removes a palmitoyl moiety from some substrate.","definition_xrefs":["GOC:pg","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity","termid":"GO:0016787"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00734":null,"SJAG_00774":null,"SJAG_02056":null,"SJAG_02268":null,"SJAG_03377":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"palmitoyl hydrolase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9027670","Reactome:R-HSA-5690046"],"termid":"GO:0098599","terms_by_termid":{"GO:0008474":null}}


id: PATO:0002229
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quadrangular shape quality inhering in a bearer by virtue of the bearer's being approximately rectangular.","direct_ancestors":[{"relation_name":"is_a","term_name":"quadrangular","termid":"PATO:0001988"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"subrectangular","termid":"PATO:0002229"}


id: PBO:0043886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cAMP responsive element modulator","termid":"PBO:0043886"}


id: MONDO:1040053
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any retinopathy caused by an autosomal dominant variant in the PROM1 gene.","definition_xrefs":["PMID:10205271","PMID:38072963"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"PROM1-related retinopathy","termid":"MONDO:1040056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0000426"],"is_obsolete":false,"name":"PROM1-related dominant retinopathy","synonyms":[{"name":"PROM1-related dominant retinopathy","type":"exact"}],"termid":"MONDO:1040053","xrefs":{"Monarch":{"xref_id":"1040053"}}}


id: GO:0060240
data:
  {"annotated_genes":["SJAG_00990"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92797],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090029"}]},"cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of the series signal transduction involved in conjugation with cellular fusion.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of signal transduction involved in conjugation with cellular fusion","termid":"GO:0060238"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"signal transduction involved in positive regulation of conjugation with cellular fusion","termid":"GO:0032005"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00990":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0000747"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0000747","GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of signal transduction involved in conjugation with cellular fusion","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0060240","terms_by_termid":{"GO:0090029":null}}


id: PBO:0057768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 2114","termid":"PBO:0057768"}


id: FYPO:0002097
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is decreased during a cellular response to hydroxyurea.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein kinase activity","termid":"FYPO:0001382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000661","FYPO:0000707","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein kinase activity during cellular response to hydroxyurea","synonyms":[{"name":"decreased protein kinase activity during cellular response to HU","type":"exact"},{"name":"reduced protein kinase activity during cellular response to HU","type":"exact"},{"name":"reduced protein kinase activity during cellular response to hydroxyurea","type":"exact"}],"termid":"FYPO:0002097"}


id: GO:0006756
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of introducing a phosphate group into AMP, adenosine monophosphate, to produce ADP. Addition of two phosphate groups produces ATP.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP biosynthetic process","termid":"GO:0006754"},{"relation_name":"is_a","term_name":"AMP metabolic process","termid":"GO:0046033"},{"relation_name":"is_a","term_name":"nucleoside monophosphate phosphorylation","termid":"GO:0046940"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"AMP phosphorylation","termid":"GO:0006756"}


id: PBO:0053796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1050","termid":"PBO:0053796"}


id: GO:0060779
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the secondary leaflet attains its shape. A secondary leaflet develops by branching or division of a primary leaflet.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leaflet morphogenesis","termid":"GO:0060794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"secondary leaflet morphogenesis","termid":"GO:0060779"}


id: PBO:0005384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chk1 protein kinase","termid":"PBO:0005384"}


id: GO:0090136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of an epithelial cell to another epithelial cell via adhesion molecules.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell adhesion","termid":"GO:0098609"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"epithelial cell-cell adhesion","termid":"GO:0090136"}


id: PBO:0059739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 13","termid":"PBO:0059739"}


id: GO:1900895
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of tridecane metabolic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of metabolic process","termid":"GO:0009893"},{"relation_name":"is_a","term_name":"regulation of tridecane metabolic process","termid":"GO:1900893"},{"relation_name":"positively_regulates","term_name":"tridecane metabolic process","termid":"GO:1900631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of tridecane metabolic process","synonyms":[{"name":"activation of tridecane metabolic process","type":"narrow"},{"name":"activation of tridecane metabolism","type":"narrow"},{"name":"positive regulation of tridecane metabolism","type":"related"},{"name":"up regulation of tridecane metabolic process","type":"exact"},{"name":"up regulation of tridecane metabolism","type":"related"},{"name":"up-regulation of tridecane metabolic process","type":"exact"},{"name":"up-regulation of tridecane metabolism","type":"related"},{"name":"upregulation of tridecane metabolic process","type":"exact"},{"name":"upregulation of tridecane metabolism","type":"related"}],"termid":"GO:1900895"}


id: PBO:0066220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 25","termid":"PBO:0066220"}


id: MONDO:0002971
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A melanoma characterized by the complete absence of melanin pigment in the melanoma cells. It occurs more frequently on the face and it is often associated with desmoplastic reaction.","definition_xrefs":["NCIT:C3802"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melanoma","termid":"MONDO:0005105"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amelanotic melanoma","secondary_identifiers":["UMLS:C0206735","EFO:1001937","ICDO:8730/3","DOID:4359","MEDGEN:64644","MESH:D018328"],"synonyms":[{"name":"amelanotic melanoma","type":"exact"},{"name":"amelanotic melanoma (morphologic abnormality)","type":"exact"},{"name":"amelanotic melanomas","type":"related"},{"name":"melanoma, amelanotic, malignant","type":"exact"},{"name":"melanomas, amelanotic","type":"related"}],"termid":"MONDO:0002971","xrefs":{"Monarch":{"xref_id":"0002971"}}}


id: PBO:0069579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 853, pseudogene","termid":"PBO:0069579"}


id: PBO:0063091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"progestin and adipoQ receptor family member 9","termid":"PBO:0063091"}


id: GO:0051542
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of elastin, a fibrous glycoprotein found in elastic tissues such as the walls of arteries.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete elastin biosynthetic process (obsolete GO:0051542)","termid":"GO:0051542"}


id: GO:0060660
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the epidermis of the nipple sheath is uplifted to form an umbrella-like projection.","definition_xrefs":["PMID:12558599","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermis morphogenesis","termid":"GO:0048730"},{"relation_name":"part_of","term_name":"nipple morphogenesis","termid":"GO:0060658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epidermis morphogenesis involved in nipple formation","termid":"GO:0060660"}


id: PBO:0031827
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_RNA_modification","termid":"PBO:0031827"}


id: PBO:0075065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-28","termid":"PBO:0075065"}


id: PBO:0038481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily B member 6 (Langereis blood group)","termid":"PBO:0038481"}


id: PBO:0077967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (AGC) 19-1","termid":"PBO:0077967"}


id: PBO:0064935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase targeting COQ7","termid":"PBO:0064935"}


id: GO:0036238
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: gallate + O2 = (1E)-4-oxobut-1-ene-1,2,4-tricarboxylate.","definition_xrefs":["EC:1.13.11.57","PMID:16030014"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"gallate dioxygenase activity","secondary_identifiers":["MetaCyc:GALLATE-DIOXYGENASE-RXN","RHEA:28927","KEGG_REACTION:R09565"],"termid":"GO:0036238"}


id: PBO:0040579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAALC antisense RNA 1","termid":"PBO:0040579"}


id: PBO:0082789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the TREX complex required for nuclear mRNA export; member of the DEAD-box RNA helicase superfamily and is involved in early and late steps of spliceosome assembly; homolog of the human splicing factor hUAP56; relocalizes from nucleus to cytoplasm upon DNA replication stress","termid":"PBO:0082789"}


id: PBO:0062860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"otospiralin","termid":"PBO:0062860"}


id: PBO:0078275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Cys (anticodon GCA) 9-3","termid":"PBO:0078275"}


id: PBO:0005078
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.3.5.1","termid":"PBO:0005078"}


id: GO:0035420
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A MAPK cascade that contributes to an innate immune response, a defense response mediated by germline encoded components that directly recognize components of potential pathogens.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete MAPK cascade involved in innate immune response (obsolete GO:0035420)","synonyms":[{"name":"MAPKKK cascade involved in innate immune response","type":"exact"}],"termid":"GO:0035420"}


id: PBO:0064013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 47","termid":"PBO:0064013"}


id: MONDO:0002036
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-neoplastic or neoplastic disorder that affects the penis. Representative examples of non-neoplastic disorders include phimosis, balanitis, and hypospadias. Representative examples of neoplastic disorders include hemangioma, penile intraepithelial neoplasia, and penile carcinoma.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"male reproductive system disorder","termid":"MONDO:0003150"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"penile disorder","secondary_identifiers":["NCIT:C26846","ICD9:607.8","DOID:1529","SCTID:33958003","MEDGEN:10627","ICD9:607.89","ICD9:607.9","MESH:D010409","UMLS:C0030846"],"synonyms":[{"name":"disease of penis","type":"exact"},{"name":"disease or disorder of penis","type":"exact"},{"name":"disorder of penis","type":"exact"},{"name":"penile disease","type":"exact"},{"name":"penile disorder","type":"exact"},{"name":"penis disease","type":"exact"},{"name":"penis disease or disorder","type":"exact"}],"termid":"MONDO:0002036","xrefs":{"Monarch":{"xref_id":"0002036"}}}


id: GO:0006081
data:
  {"annotated_genes":["SJAG_00281","SJAG_00691","SJAG_04726","SJAG_04263","SJAG_04674","SJAG_00707","SJAG_01457","SJAG_01881","SJAG_02988","SJAG_03934","SJAG_02106","SJAG_01596","SJAG_00283","SJAG_05256","SJAG_02960","SJAG_01543","SJAG_04404","SJAG_00070","SJAG_01432","SJAG_00501","SJAG_01383","SJAG_00252","SJAG_03174","SJAG_04192"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92293],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036001"},{"annotations":[79924,95029],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046294"},{"annotations":[73792],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046166"},{"annotations":[73524,74934],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903189"},{"annotations":[104635,100549],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009436"},{"annotations":[74599,61677,102323,76233],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019243"},{"annotations":[104595,59614,61426],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061727"},{"annotations":[103887,107988,75536,76297,74885],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009052"},{"annotations":[80011,76999],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009443"},{"annotations":[113993],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042821"},{"annotations":[77361,65182],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042823"},{"annotations":[111407],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010144"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":24,"genes_by_uniquename":{"SJAG_00070":null,"SJAG_00252":null,"SJAG_00281":null,"SJAG_00283":null,"SJAG_00501":null,"SJAG_00691":null,"SJAG_00707":null,"SJAG_01383":null,"SJAG_01432":null,"SJAG_01457":null,"SJAG_01543":null,"SJAG_01596":null,"SJAG_01881":null,"SJAG_02106":null,"SJAG_02960":null,"SJAG_02988":null,"SJAG_03174":null,"SJAG_03934":null,"SJAG_04192":null,"SJAG_04263":null,"SJAG_04404":null,"SJAG_04674":null,"SJAG_04726":null,"SJAG_05256":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aldehyde metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"aldehyde metabolism","type":"exact"},{"name":"alkanal metabolic process","type":"exact"},{"name":"alkanal metabolism","type":"exact"}],"termid":"GO:0006081","terms_by_termid":{"GO:0009052":null,"GO:0009436":null,"GO:0009443":null,"GO:0010144":null,"GO:0019243":null,"GO:0036001":null,"GO:0042821":null,"GO:0042823":null,"GO:0046166":null,"GO:0046294":null,"GO:0061727":null,"GO:1903189":null}}


id: GO:0048133
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The self-renewing division of a germline stem cell in the male gonad, to produce a daughter stem cell and a daughter germ cell, which will divide to form the male gametes.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"germline stem cell asymmetric division","termid":"GO:0098728"},{"relation_name":"part_of","term_name":"spermatogenesis","termid":"GO:0007283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"male germ-line stem cell asymmetric division","synonyms":[{"name":"male germ-line stem cell renewal","type":"exact"}],"termid":"GO:0048133"}


id: GO:0015832
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete holin (obsolete GO:0015832)","synonyms":[{"name":"holin","type":"exact"}],"termid":"GO:0015832"}


id: GO:1902437
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of male mating behavior.","definition_xrefs":["GOC:TermGenie","PMID:24089208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of behavior","termid":"GO:0048520"},{"relation_name":"is_a","term_name":"regulation of male mating behavior","termid":"GO:1902435"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"male mating behavior","termid":"GO:0060179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of male mating behavior","synonyms":[{"name":"activation of male mating behavior","type":"narrow"},{"name":"up regulation of male mating behavior","type":"exact"},{"name":"up-regulation of male mating behavior","type":"exact"},{"name":"upregulation of male mating behavior","type":"exact"}],"termid":"GO:1902437"}


id: PBO:0066935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 237","termid":"PBO:0066935"}


id: MOD:00385
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-asparagine residue and a glycine residue to form L-asparagine 5-imidazolinone glycine.","definition_xrefs":["RESID:AA0380","PubMed:10504696"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5-imidazolinone ring crosslinked residues (Gly)","termid":"MOD:01882"},{"relation_name":"is_a","term_name":"crosslinked L-asparagine residue","termid":"MOD:02042"},{"relation_name":"is_a","term_name":"crosslinked glycine residue","termid":"MOD:02047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-asparagine 5-imidazolinone glycine","synonyms":[{"name":"(2-[(1S)-1,3-diamino-3-oxopropyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid","type":"exact"},{"name":"2-[(S)-1,3-diamino-3-oxopropyl]-1-carboxymethyl-1-imidazolin-5-one","type":"exact"},{"name":"CROSSLNK 5-imidazolinone (Asn-Gly)","type":"exact"},{"name":"L-asparagine 5-imidazolinone glycine","type":"exact"},{"name":"Zoanthus sp. fluorescent protein FP506 chromophore","type":"exact"},{"name":"[2-(1,3-diamino-3-oxopropyl)-5-oxo-4,5-dihydro-imidazol-1-yl]-acetic acid","type":"exact"},{"name":"asparaginyl-5-imidazolinone glycine","type":"exact"},{"name":"para-hydroxybenzylidene-imidazolidinone chromophore","type":"exact"}],"termid":"MOD:00385"}


id: GO:0006718
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of juvenile hormones, the three sesquiterpenoid derivatives that function to maintain the larval state of insects at molting and that may be required for other processes, e.g. oogenesis.","definition_xrefs":["GOC:go_curators","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"juvenile hormone metabolic process","termid":"GO:0006716"},{"relation_name":"is_a","term_name":"sesquiterpenoid biosynthetic process","termid":"GO:0016106"},{"relation_name":"is_a","term_name":"hormone biosynthetic process","termid":"GO:0042446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"juvenile hormone biosynthetic process","synonyms":[{"name":"juvenile hormone anabolism","type":"exact"},{"name":"juvenile hormone biosynthesis","type":"exact"},{"name":"juvenile hormone formation","type":"exact"},{"name":"juvenile hormone synthesis","type":"exact"}],"termid":"GO:0006718"}


id: PBO:0079373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin alpha pseudogene 8","termid":"PBO:0079373"}


id: PR:Q9UT35
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ectonucleoside triphosphate diphosphohydrolase 6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00693","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanosine-diphosphatase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC824.08","secondary_identifiers":["UniProtKB:Q9UT35"],"synonyms":[{"name":"GDPase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ENTPD6","type":"exact"}],"termid":"PR:Q9UT35"}


id: MONDO:0033204
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"primary ciliary dyskinesia","termid":"MONDO:0016575"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliary dyskinesia, primary, 37","secondary_identifiers":["GARD:16239","OMIM:617577","UMLS:C4539798","DOID:0080266","MEDGEN:1615746"],"synonyms":[{"name":"CILD37","type":"related"},{"name":"ciliary dyskinesia, primary, 37","type":"exact"},{"name":"ciliary dyskinesia, primary, 37, with or without situs inversus","type":"related"},{"name":"primary ciliary dyskinesia 37","type":"related"}],"termid":"MONDO:0033204","xrefs":{"Monarch":{"xref_id":"0033204"}}}


id: PR:O94349
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC61.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94349"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C61.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC61.05","synonyms":[{"name":"Spom972h-SPCC61.05","type":"exact"}],"termid":"PR:O94349"}


id: MOD:01421
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks two residues by condensation of a serine hydroxyl with the carbonyl of the preceding residue to form an oxazole or oxazoline ring.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxazole/oxazoline ring crosslinked residues","termid":"MOD:01419"},{"relation_name":"is_a","term_name":"crosslinked L-serine residue","termid":"MOD:02055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxazole/oxazoline ring crosslinked residues (Ser)","termid":"MOD:01421"}


id: FYPO:0005760
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell adhesion phenotype observed in the vegetative growth phase of the life cycle in which cells adhere to each other more strongly or to a greater extent than normal.","definition_xrefs":["PomBase:mah","GO:0098610"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell adhesion during vegetative growth","termid":"FYPO:0000009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased cell-cell adhesion","synonyms":[{"name":"increased adhesion between unicellular organisms","type":"exact"},{"name":"increased cell-cell adhesion during mitotic cell cycle","type":"related"},{"name":"increased cell-cell adhesion during vegetative growth","type":"exact"}],"termid":"FYPO:0005760"}


id: PBO:0086664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by expression profiling and mass spectrometry","termid":"PBO:0086664"}


id: PBO:0046280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elastin microfibril interfacer 2","termid":"PBO:0046280"}


id: PBO:0029475
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-swollen_septated_spheroid_vegetative_cell","termid":"PBO:0029475"}


id: PBO:0042262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin containing TCP1 subunit 5 pseudogene 1","termid":"PBO:0042262"}


id: GO:1990154
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of the pentameric maltose transporter complex bound to two enzyme IIA (EIIA) molecules. EIIA is a component of the glucose-specific phosphotransferase system that inhibits maltose transport from the periplasm to the cytoplasm. When EIIA-bound, the maltose transporter remains in the open, inward-facing conformation, which prevents binding of maltose-loaded maltose binding protein (MBP) to the transporter.","definition_xrefs":["PMID:23770568","GOC:bhm","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-binding cassette (ABC) transporter complex","termid":"GO:0043190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"enzyme IIA-maltose transporter complex","synonyms":[{"name":"EIIA(Glc)-MalFGK2 complex","type":"exact"},{"name":"EIIA(Glc)-maltose transporter complex","type":"exact"},{"name":"maltose transporter inhibitor complex","type":"related"}],"termid":"GO:1990154"}


id: GO:1990716
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Part of the 9+2 axoneme, that occurs in most motile cilia, consisting of the pair of two single central microtubules and their associated structures which include the central pair projections, the central pair bridges linking the two tubules, and the central pair caps which are attached to the distal or plus ends of the microtubules.","definition_xrefs":["PMID:9295136","GOC:cilia","PMID:21586547"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"axoneme","termid":"GO:0005930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"axonemal central apparatus","termid":"GO:1990716"}


id: GO:1904322
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a forskolin stimulus.","definition_xrefs":["GO_REF:0000071","PMID:15937517","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"},{"relation_name":"is_a","term_name":"cellular response to alcohol","termid":"GO:0097306"},{"relation_name":"is_a","term_name":"cellular response to ketone","termid":"GO:1901655"},{"relation_name":"is_a","term_name":"response to forskolin","termid":"GO:1904321"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to forskolin","termid":"GO:1904322"}


id: GO:0019677
data:
  {"annotated_genes":["SJAG_03091"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74153],"is_not":false,"summary":null,"term":"GO:0019677"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of nicotinamide adenine dinucleotide (NAD+), a coenzyme that interconverts with its reduced form, NADH, in many redox and catabolic reactions.","definition_xrefs":["PMID:28648096"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleotide catabolic process","termid":"GO:0006195"},{"relation_name":"is_a","term_name":"pyridine nucleotide catabolic process","termid":"GO:0019364"},{"relation_name":"is_a","term_name":"NAD+ metabolic process","termid":"GO:0019674"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03091":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"NAD+ catabolic process","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["GO:0006737","MetaCyc:NAD-BIOSYNTHESIS-II"],"synonyms":[{"name":"NAD (oxidized) catabolic process","type":"exact"},{"name":"NAD (oxidized) catabolism","type":"exact"},{"name":"NAD (reduced) catabolic process","type":"exact"},{"name":"NAD (reduced) catabolism","type":"exact"},{"name":"NAD breakdown","type":"exact"},{"name":"NAD catabolic process","type":"exact"},{"name":"NAD catabolism","type":"exact"},{"name":"NAD degradation","type":"exact"},{"name":"NADH catabolic process","type":"exact"},{"name":"NADH catabolism","type":"exact"},{"name":"nicotinamide adenine dinucleotide catabolic process","type":"exact"},{"name":"nicotinamide adenine dinucleotide catabolism","type":"exact"},{"name":"oxidized NAD catabolic process","type":"exact"},{"name":"oxidized NAD catabolism","type":"exact"},{"name":"oxidized nicotinamide adenine dinucleotide catabolic process","type":"exact"},{"name":"oxidized nicotinamide adenine dinucleotide catabolism","type":"exact"},{"name":"reduced NAD catabolic process","type":"exact"},{"name":"reduced NAD catabolism","type":"exact"},{"name":"reduced nicotinamide adenine dinucleotide catabolic process","type":"exact"},{"name":"reduced nicotinamide adenine dinucleotide catabolism","type":"exact"}],"termid":"GO:0019677","terms_by_termid":{"GO:0019677":null}}


id: PBO:0050018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class II, DO alpha","termid":"PBO:0050018"}


id: PBO:0027702
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_nucleolar_chromatin_organization","termid":"PBO:0027702"}


id: GO:0003955
data:
  {"annotated_genes":["SJAG_04152","SJAG_02697","SJAG_01539"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[80231],"is_not":false,"summary":null,"term":"GO:0003955"},{"annotations":[96226,112447],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050136"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)+ + a quinol.","definition_xrefs":["EC:1.6.5.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor","termid":"GO:0016655"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01539":null,"SJAG_02697":null,"SJAG_04152":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"NAD(P)H dehydrogenase (quinone) activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["UM-BBD_reactionID:r0227","MetaCyc:NQOR-RXN"],"synonyms":[{"name":"DT-diaphorase activity","type":"related"},{"name":"NAD(P)H dehydrogenase activity","type":"broad"},{"name":"NAD(P)H menadione reductase activity","type":"broad"},{"name":"NAD(P)H(2) dehydrogenase (quinone) activity","type":"related"},{"name":"NAD(P)H-quinone dehydrogenase activity","type":"related"},{"name":"NAD(P)H-quinone oxidoreductase activity","type":"related"},{"name":"NAD(P)H2 dehydrogenase (quinone)","type":"related"},{"name":"NAD(P)H: menadione oxidoreductase activity","type":"broad"},{"name":"NAD(P)H:(quinone-acceptor)oxidoreductase activity","type":"related"},{"name":"NAD(P)H:quinone oxidoreductase activity","type":"related"},{"name":"NADH-menadione reductase activity","type":"narrow"},{"name":"NQO1","type":"related"},{"name":"QR1","type":"related"},{"name":"azoreductase activity","type":"broad"},{"name":"dehydrogenase, reduced nicotinamide adenine dinucleotide (phosphate, quinone) activity","type":"related"},{"name":"diaphorase activity","type":"broad"},{"name":"flavoprotein NAD(P)H-quinone reductase activity","type":"related"},{"name":"menadione oxidoreductase activity","type":"narrow"},{"name":"menadione reductase activity","type":"narrow"},{"name":"naphthoquinone reductase activity","type":"narrow"},{"name":"p-benzoquinone reductase activity","type":"narrow"},{"name":"phylloquinone reductase activity","type":"narrow"},{"name":"quinone reductase activity","type":"related"},{"name":"reduced NAD(P)H dehydrogenase activity","type":"related"},{"name":"reduced nicotinamide-adenine dinucleotide (phosphate) dehydrogenase activity","type":"related"},{"name":"viologen accepting pyridine nucleotide oxidoreductase activity","type":"narrow"},{"name":"vitamin K reductase activity","type":"narrow"},{"name":"vitamin-K reductase activity","type":"narrow"}],"termid":"GO:0003955","terms_by_termid":{"GO:0003955":null,"GO:0050136":null}}


id: GO:2000719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of maintenance of mitotic sister chromatid cohesion in the centromeric region.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of maintenance of mitotic sister chromatid cohesion","termid":"GO:0034183"},{"relation_name":"is_a","term_name":"regulation of maintenance of mitotic sister chromatid cohesion, centromeric","termid":"GO:2000718"},{"relation_name":"negatively_regulates","term_name":"maintenance of mitotic sister chromatid cohesion, centromeric","termid":"GO:0071960"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"negative regulation of maintenance of mitotic sister chromatid cohesion, centromeric","synonyms":[{"name":"negative regulation of maintenance of centromeric mitotic sister chromatin cohesion","type":"exact"},{"name":"negative regulation of maintenance of mitotic sister chromatin cohesion at centromere","type":"exact"},{"name":"negative regulation of maintenance of sister chromatin cohesion at centromere at mitosis","type":"exact"}],"termid":"GO:2000719"}


id: MOD:00794
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because redundant and identical to MOD:00477. Remap to MOD:00477.","definition_xrefs":["PubMed:9252331","Unimod:369"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00794 pyrrolidone from proline (obsolete MOD:00794)","synonyms":[{"name":"Pro->Pyrrolidone","type":"related"},{"name":"Pyrrolidone from Proline","type":"related"}],"termid":"MOD:00794"}


id: PBO:0079859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unc-93 homolog B8 (pseudogene)","termid":"PBO:0079859"}


id: PBO:0083813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential serine kinase involved in the processing of 20S pre-rRNA; involved in the processing of the 20S pre-rRNA into mature 18S rRNA; has similarity to Rio1p","termid":"PBO:0083813"}


id: PBO:0056110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LYPLA2 pseudogene 1","termid":"PBO:0056110"}


id: PBO:0063288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin gamma subfamily B, 2","termid":"PBO:0063288"}


id: PBO:0052066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine acetyltransferase 6B","termid":"PBO:0052066"}


id: MONDO:0008499
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Short stature-wormian bones-dextrocardia syndrome is a multiple congenital anomalies syndrome characterized by wormian bones, dextrocardia and short stature due to a growth hormone deficiency. Additional manifestations that have been reported include brachycamptodactyly, kidney hypoplasia, bilateral cryptorchidism, midshaft hypospadias, imperforate anus/anorectal agenesis, body asymetry, mild developmental delay, hemimegalencephaly and facial dysmorphism, such as hypotelorism, downslanting palpebral fissures, low-set and posteriorly angulated ears, depressed nasal bridge, and microstomia.","definition_xrefs":["Orphanet:2863"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short stature-wormian bones-dextrocardia syndrome","secondary_identifiers":["UMLS:C1861448","SCTID:763631006","OMIM:185120","GARD:4856","MEDGEN:350025","MESH:C566105"],"synonyms":[{"name":"Growth hormone deficiency with Wormian bones, Cardiac anomaly, and Brachycamptodactyly","type":"related"},{"name":"STRATTON-PARKER syndrome","type":"related"},{"name":"Stratton Parker syndrome","type":"related"},{"name":"Stratton-Parker syndrome","type":"exact"},{"name":"short stature wormian bones dextrocardia","type":"related"}],"termid":"MONDO:0008499","xrefs":{"Monarch":{"xref_id":"0008499"}}}


id: GO:0090340
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of secretion of lysosomal enzymes, the controlled release of lysosomal enzymes by a cell.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein secretion","termid":"GO:0050714"},{"relation_name":"is_a","term_name":"regulation of secretion of lysosomal enzymes","termid":"GO:0090182"},{"relation_name":"positively_regulates","term_name":"secretion of lysosomal enzymes","termid":"GO:0033299"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of secretion of lysosomal enzymes","termid":"GO:0090340"}


id: PBO:0081279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF45 antisense RNA 1","termid":"PBO:0081279"}


id: PBO:0072812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterile alpha motif domain containing 8","termid":"PBO:0072812"}


id: MOD:02018
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with an arachidonoyl group.","direct_ancestors":[{"relation_name":"is_a","term_name":"acylated residue","termid":"MOD:00649"},{"relation_name":"is_a","term_name":"lipoconjugated residue","termid":"MOD:01155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:01155"],"is_obsolete":false,"name":"arachidonoylated residue","termid":"MOD:02018"}


id: PBO:0084738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial intermembrane space protein; forms complex with Ups2p that transfers phosphatidylserine from outer membrane to inner membrane for phosphatidylethanolamine synthesis; mutation affects mitochondrial distribution and morphology; contains twin cysteine-x9-cysteine motifs; protein abundance increases in response to DNA replication stress","termid":"PBO:0084738"}


id: GO:0042851
data:
  {"annotated_genes":["SJAG_04145"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110814],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042852"},{"annotations":[70212],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042853"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving L-alanine, the L-enantiomer of 2-aminopropanoic acid, i.e. (2S)-2-aminopropanoic acid.","definition_xrefs":["GOC:jl","GOC:jsg","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alanine metabolic process","termid":"GO:0006522"},{"relation_name":"is_a","term_name":"pyruvate family amino acid metabolic process","termid":"GO:0009078"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04145":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"L-alanine metabolic process","references_by_uniquename":{"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"L-alanine metabolism","type":"exact"}],"termid":"GO:0042851","terms_by_termid":{"GO:0042852":null,"GO:0042853":null}}


id: GO:0061216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the mesonephros progressing from its initial formation to the mature state.","definition_xrefs":["GOC:mtg_kidney_jan10"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter involved in mesonephros development (obsolete GO:0061216)","termid":"GO:0061216"}


id: MONDO:0015557
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Smouldering systemic mastocytosis is a type of systemic mastocytosis (SM). This clonal hematologic disease, with a slow progression, results in an accumulation of neoplastic mast cells in the visceral organs over time and patients present with splenomegaly, hypercellular marrow and, in some cases, urticaria pigmentosa-like skin lesions.","definition_xrefs":["Orphanet:158775"],"direct_ancestors":[{"relation_name":"is_a","term_name":"indolent systemic mastocytosis","termid":"MONDO:0020331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"Smouldering systemic mastocytosis","secondary_identifiers":["icd11.foundation:481663898","NCIT:C115460","MEDGEN:856636","GARD:20036","UMLS:C3897042"],"termid":"MONDO:0015557","xrefs":{"Monarch":{"xref_id":"0015557"}}}


id: PBO:0080859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Yip1 interacting factor homolog B, membrane trafficking protein","termid":"PBO:0080859"}


id: GO:0048761
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a collenchyma cell. This is a plant cell in which the primary cell walls are unevenly thickened, with most thickening occurring at the cell corners. Cells are living and able to grow, they are elongated, and lignin and secondary walls absent. Collenchyma cells make up collenchyma tissue which acts as a supporting tissue in growing shoots, leaves and petioles. This tissue is often arranged in cortical ribs, as seen prominently in celery and rhubarb petioles.","definition_xrefs":["GOC:jid","PO:0000075","CL:0000330"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"collenchyma cell differentiation","termid":"GO:0048761"}


id: PBO:0117456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S43a","termid":"PBO:0117456"}


id: PBO:0001699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type ATPase V1 subunit C (predicted)","termid":"PBO:0001699"}


id: MONDO:0008289
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any porencephaly in which the cause of the disease is a mutation in the COL4A1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete COL4A1 or COL4A2-related cerebral small vessel disease with hemorrhagic tendency (obsolete MONDO:0018790)","termid":"MONDO:0018790"},{"relation_name":"is_a","term_name":"familial porencephaly","termid":"MONDO:0020496"},{"relation_name":"is_a","term_name":"COL4A1-related disorder","termid":"MONDO:0800461"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brain small vessel disease 1 with or without ocular anomalies","secondary_identifiers":["MESH:C531642","MESH:C564372","OMIM:607595","MEDGEN:1647320","Orphanet:36383","UMLS:C4551998","OMIM:175780","DOID:0090125","GARD:15107"],"synonyms":[{"name":"ADT1P","type":"exact"},{"name":"BSVD","type":"exact"},{"name":"BSVD1","type":"exact"},{"name":"COL4A1 porencephaly","type":"exact"},{"name":"COL4A1-related brain small vessel disease with haemorrhage","type":"exact"},{"name":"COL4A1-related brain small vessel disease with hemorrhage","type":"exact"},{"name":"COL4A1-related familial vascular leukoencephalopathy","type":"exact"},{"name":"COL4A1-related retinal arteriolar tortuosity-infantile hemiparesis-autosomal dominant leukoencephalopathy syndrome","type":"exact"},{"name":"POREN1","type":"related"},{"name":"T1P","type":"exact"},{"name":"autosomal dominant retinal arteriolar tortuosity, infantile hemiparesis, and leukencephalopathy","type":"exact"},{"name":"brain small vessel disease with Axenfeld-Riegar anomaly","type":"exact"},{"name":"brain small vessel disease with axenfeld-rieger anomaly","type":"exact"},{"name":"brain small vessel disease with haemorrhage","type":"exact"},{"name":"brain small vessel disease with hemorrhage","type":"exact"},{"name":"brain small vessel disease with or without ocular anomalies","type":"exact"},{"name":"hemiplegia, infantile, with porencephaly","type":"exact"},{"name":"hemiplegia, infantile, with porencephaly porencephaly, type 1","type":"related"},{"name":"infantile hemiparesis","type":"exact"},{"name":"leukoencephalopathy with axenfeld-rieger anomaly","type":"exact"},{"name":"porencephaly 1","type":"exact"},{"name":"porencephaly caused by mutation in COL4A1","type":"exact"},{"name":"porencephaly type 1","type":"exact"},{"name":"porencephaly, type 1, autosomal dominant","type":"related"},{"name":"retinal arteriolar tortuosity, infantile hemiparesis, and leukoencephalopathy, autosomal dominant","type":"exact"}],"termid":"MONDO:0008289","xrefs":{"Monarch":{"xref_id":"0008289"}}}


id: GO:0000024
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of the disaccharide maltose (4-O-alpha-D-glucopyranosyl-D-glucopyranose).","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maltose metabolic process","termid":"GO:0000023"},{"relation_name":"is_a","term_name":"disaccharide biosynthetic process","termid":"GO:0046351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"maltose biosynthetic process","synonyms":[{"name":"malt sugar biosynthesis","type":"exact"},{"name":"malt sugar biosynthetic process","type":"exact"},{"name":"maltose anabolism","type":"exact"},{"name":"maltose biosynthesis","type":"exact"},{"name":"maltose formation","type":"exact"},{"name":"maltose synthesis","type":"exact"}],"termid":"GO:0000024"}


id: GO:0060081
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which membrane potential increases with respect to its steady-state potential, usually from negative potential to a more negative potential. For example, during the repolarization phase of an action potential the membrane potential often becomes more negative or hyperpolarized before returning to the steady-state resting potential.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane potential","termid":"GO:0042391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"membrane hyperpolarization","termid":"GO:0060081"}


id: PBO:0004671
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tandem fusion protein in S. cerevisiae, SPBC21C3.07c is related to the C-terminal region of YOR239W","termid":"PBO:0004671"}


id: PBO:0086805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; YDL206W is not an essential protein","termid":"PBO:0086805"}


id: GO:0141109
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of a transporter.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular function activator activity","termid":"GO:0140677"},{"relation_name":"is_a","term_name":"transporter regulator activity","termid":"GO:0141108"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0140677","GO:0003674","GO:0098772"],"is_obsolete":false,"name":"transporter activator activity","termid":"GO:0141109"}


id: PBO:0077379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 120B","termid":"PBO:0077379"}


id: PBO:0069589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 863, pseudogene","termid":"PBO:0069589"}


id: MONDO:0010786
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chronic diarrhea with villous atrophy is a rare, genetic gastroenterological disease characterized by the early onset of chronic diarrhea, vomiting, anorexia, lactic acidosis, renal insufficiency and hepatic involvement (mild elevation of liver enzymes, steatosis, hepatomegaly). Partial villous atrophy (with eosinophilic infiltration) is observed on intestinal biopsy. Although diarrhea may resolve, the development of neurologic symptoms (cerebellar ataxia, sensorineural deafness, seizures), retinitis pigmentosa and muscle weakness may complicate disease course and lead to death. There have been no further descriptions in the literature since 1994.","definition_xrefs":["Orphanet:1670"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal disorder","termid":"MONDO:0005020"},{"relation_name":"is_a","term_name":"mitochondrial oxidative phosphorylation disorder","termid":"MONDO:0016387"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066","MONDO:0004335"],"is_obsolete":false,"name":"chronic diarrhea with villous atrophy","secondary_identifiers":["GARD:16576","UMLS:C1838912","MESH:C564019","MEDGEN:325129","OMIM:520100","ICD10CM:K59.1"],"synonyms":[{"name":"diarrhea, chronic, with villous atrophy","type":"related"}],"termid":"MONDO:0010786","xrefs":{"Monarch":{"xref_id":"0010786"}}}


id: PBO:0113127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential subunit of the Dam1 complex (aka DASH complex); cooperates with Duo1p and Pse1p to connect the DASH complex with the microtubules (MT); couples kinetochores to the force produced by MT depolymerization, thereby aiding in chromosome segregation; N-terminal staple region is important for self-assembly of the Dam1 complex higher order ring structure that forms around microtubules; Ipl1p target for regulating kinetochore-MT attachments","termid":"PBO:0113127"}


id: FYPO:0004529
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A metabolism phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial translation is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal mitochondrial translation","synonyms":[{"name":"normal mitochondrial protein biosynthesis","type":"exact"},{"name":"normal mitochondrial protein synthesis","type":"exact"},{"name":"normal mitochondrial translation during mitotic cell cycle","type":"related"},{"name":"normal mitochondrial translation during vegetative growth","type":"exact"}],"termid":"FYPO:0004529"}


id: GO:0030954
data:
  {"annotated_genes":["SJAG_02737"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[116550],"is_not":false,"summary":null,"term":"GO:0030954"}]},"cv_name":"biological_process","definition":"The 'de novo' formation of an astral microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"astral microtubule organization","termid":"GO:0030953"},{"relation_name":"is_a","term_name":"microtubule nucleation by microtubule organizing center","termid":"GO:0051418"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02737":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0065003","GO:0000226","GO:0044085","GO:0007049","GO:0008150","GO:0007010"],"is_obsolete":false,"name":"astral microtubule nucleation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030954","terms_by_termid":{"GO:0030954":null}}


id: FYPO:0006656
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the unwinding of G-quadruplex DNA structures occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromosome organization","termid":"FYPO:0000641"},{"relation_name":"is_a","term_name":"abnormal cellular component organization during vegetative growth","termid":"FYPO:0001353"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0000641","FYPO:0001985"],"is_obsolete":false,"name":"decreased G-quadruplex DNA unwinding","synonyms":[{"name":"decreased G-quadruplex DNA unwinding during mitotic cell cycle","type":"related"},{"name":"decreased G-quadruplex DNA unwinding during vegetative growth","type":"exact"},{"name":"decreased G-quartet DNA unwinding","type":"exact"},{"name":"decreased G4 DNA unwinding","type":"exact"},{"name":"reduced G-quadruplex DNA unwinding","type":"exact"}],"termid":"FYPO:0006656"}


id: PBO:0067930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 232","termid":"PBO:0067930"}


id: PBO:0078330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (anticodon CTC) 1-2","termid":"PBO:0078330"}


id: FYPO:0008047
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in meiosis in which dimethylation of lysine at position 4 of histone H3 is decreased at the centromere.","direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein modification during meiotic cell cycle","termid":"FYPO:0006459"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002494","FYPO:0005447","FYPO:0002274","FYPO:0000002"],"is_obsolete":false,"name":"decreased histone H3-K4 dimethylation  at centromere during meiosis","termid":"FYPO:0008047"}


id: PBO:0082217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha 6 subunit of the 20S proteasome; protein abundance increases in response to DNA replication stress","termid":"PBO:0082217"}


id: GO:0071918
data:
  {"annotated_genes":["SJAG_02125"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57966],"is_not":false,"summary":null,"term":"GO:0071918"}]},"cv_name":"biological_process","definition":"The process in which urea, the water-soluble compound H2N-CO-NH2, is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urea transport","termid":"GO:0015840"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02125":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"urea transmembrane transport","references_by_uniquename":{"GO_REF:0000002":null},"synonyms":[{"name":"urea membrane transport","type":"exact"}],"termid":"GO:0071918","terms_by_termid":{"GO:0071918":null}}


id: MONDO:0022819
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete congenital arteriovenous shunt (obsolete MONDO:0022819)","termid":"MONDO:0022819","xrefs":{"Monarch":{"xref_id":"0022819"}}}


id: GO:0048457
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the floral whorl are generated and organized.","definition_xrefs":["GOC:go_curators","GOC:PO_curators","PO:0025023"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"post-embryonic plant morphogenesis","termid":"GO:0090698"},{"relation_name":"part_of","term_name":"floral whorl development","termid":"GO:0048438"},{"relation_name":"part_of","term_name":"flower morphogenesis","termid":"GO:0048439"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"floral whorl morphogenesis","secondary_identifiers":["GO:0048414"],"termid":"GO:0048457"}


id: _global:acts_upstream_of_or_within,_positive_effect
data:
  {"annotation_feature_type":"gene","cv_name":"external","direct_ancestors":[{"relation_name":"is_a","term_name":"acts_upstream_of_or_within","termid":"_global:acts_upstream_of_or_within"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acts_upstream_of_or_within,_positive_effect","secondary_identifiers":["RO:0004032"],"termid":"_global:acts_upstream_of_or_within,_positive_effect"}


id: GO:0050311
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: hydrogen sulfide + 3 oxidized ferredoxin + 3 H2O = sulfite + 3 reduced ferredoxin.","definition_xrefs":["MetaCyc:SULFITE-REDUCTASE-FERREDOXIN-RXN","EC:1.8.7.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, iron-sulfur protein as acceptor","termid":"GO:0016673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"sulfite reductase (ferredoxin) activity","secondary_identifiers":["RHEA:23132"],"synonyms":[{"name":"ferredoxin-sulfite reductase activity","type":"related"},{"name":"hydrogen-sulfide:ferredoxin oxidoreductase activity","type":"related"},{"name":"sulphite reductase (ferredoxin) activity","type":"exact"}],"termid":"GO:0050311"}


id: PBO:0043746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 7B2","termid":"PBO:0043746"}


id: PBO:0034548
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_rate_of_protein_degradation","termid":"PBO:0034548"}


id: GO:0035780
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of CD80, a CD marker that occurs on antigen presenting cells such as activated B cells and monocytes that provides a co-stimulatory signal necessary for T cell activation and survival.","definition_xrefs":["GOC:BHF","GOC:ebc"],"gene_count":0,"genotype_count":0,"name":"obsolete CD80 biosynthetic process (obsolete GO:0035780)","synonyms":[{"name":"CD80 anabolism","type":"exact"},{"name":"CD80 biosynthesis","type":"exact"},{"name":"CD80 formation","type":"exact"},{"name":"CD80 synthesis","type":"exact"}],"termid":"GO:0035780"}


id: PR:Q09708
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC12G12.16c gene.","definition_xrefs":["UniProtKB:Q09708","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C12G12.16c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12G12.16c","synonyms":[{"name":"Spom972h-SPAC12G12.16c","type":"exact"}],"termid":"PR:Q09708"}


id: PBO:0086915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative zinc cluster protein, predicted to be a transcription factor; not an essential gene; EDS1 has a paralog, RGT1, that arose from the whole genome duplication","termid":"PBO:0086915"}


id: PBO:0071998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S7","termid":"PBO:0071998"}


id: PR:000050515
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A microtubule protein alp7 (Schizosaccharomyces pombe) that has been phosphorylated at the positions equivalent to Ser-248, Thr-297, Thr-351 and Ser-402 of the amino acid sequence represented by UniProtKB:Q9URY2. Example: UniProtKB:Q9URY2, Ser-248/Ser-402, MOD:00046|Thr-297/Thr-351, MOD:00047.","definition_xrefs":["PRO:DAN","PMID:23770679","PomBase:VW"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule protein alp7 (Schizosaccharomyces pombe)","termid":"PR:000050514"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alp7/Phos:(S248,T297,T351,S402)","pombase_gene_id":"SPAC890.02c","synonyms":[{"name":"PomBase_original_PRO_term_name: microtubule protein alp7 phosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-alp7/Phos:1","type":"exact"},{"name":"UniProtKB:Q9URY2, Ser-248/Ser-402, MOD:00046|Thr-297/Thr-351, MOD:00047","type":"narrow"},{"name":"alp7/Phos:(S248,T297,T351,S402)","type":"exact"}],"termid":"PR:000050515"}


id: PBO:0051730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrator complex subunit 3","termid":"PBO:0051730"}


id: MONDO:0001050
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An otitis externa which involves infection of the external ear that has spread to involve the skull bone containing part of the ear canal, the middle ear, and the inner ear. It is caused by the bacteria Pseudomonas. This is common in people with weakened immune systems and in older people with diabetes.","definition_xrefs":["DOID:10516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"otitis externa","termid":"MONDO:0004795"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malignant otitis externa","secondary_identifiers":["MEDGEN:509950","ICD9:380.14","SCTID:94146005","UMLS:C0155395","icd11.foundation:984580942","ICD10CM:H60.2"],"termid":"MONDO:0001050","xrefs":{"Monarch":{"xref_id":"0001050"}}}


id: PBO:0047625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"filamin A interacting protein 1","termid":"PBO:0047625"}


id: MONDO:0044113
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A manifestation of systemic lupus erythematosus with a widespread vesiculobullous eruption.","definition_xrefs":["NCIT:C117104"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cutaneous lupus erythematosus","termid":"MONDO:0005282"},{"relation_name":"is_a","term_name":"systemic lupus erythematosus","termid":"MONDO:0007915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"bullous systemic lupus erythematosus","secondary_identifiers":["MEDGEN:592738","Orphanet:46489","SCTID:239889005","UMLS:C0409977"],"synonyms":[{"name":"BSLE","type":"exact"},{"name":"bullous systemic lupus erythematosus","type":"exact"}],"termid":"MONDO:0044113","xrefs":{"Monarch":{"xref_id":"0044113"}}}


id: FYPO:0007297
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription from a promoter that contains one or more SRE elements occurs to a greater extent than normal.","definition_xrefs":["PMID:32053662","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased transcription during vegetative growth","termid":"FYPO:0000780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0006551","FYPO:0000002","FYPO:0001320","FYPO:0000294"],"is_obsolete":false,"name":"increased transcription from SRE promoter","synonyms":[{"name":"expression of SRE target genes increased","type":"related"},{"name":"increased transcription from SRE promoter during mitotic cell cycle","type":"related"},{"name":"increased transcription from SRE promoter during vegetative growth","type":"exact"}],"termid":"FYPO:0007297"}


id: PBO:0083090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA binding transcriptional activator; mediates serine/threonine activation of the catabolic L-serine (L-threonine) deaminase (CHA1); Zinc-finger protein with Zn[2]-Cys[6] fungal-type binuclear cluster domain","termid":"PBO:0083090"}


id: PATO:0001076
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001076 relative momentum (obsolete PATO:0001076)","termid":"PATO:0001076"}


id: GO:0106179
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of inorganic cations and their chelates.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activity acting on inorganic cations and their chelates (obsolete GO:0106179)","termid":"GO:0106179"}


id: GO:0015292
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transport of a single molecular species across a membrane; transport is independent of the movement of any other molecular species.","definition_xrefs":["ISBN:0815340729","PMID:10839820","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary active transmembrane transporter activity","termid":"GO:0015291"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"uniporter activity","synonyms":[{"name":"facilitated diffusion carrier","type":"exact"},{"name":"single-species transporter activity","type":"exact"},{"name":"uniport","type":"related"}],"termid":"GO:0015292"}


id: PR:Q9USJ4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nte1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9USJ4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysophospholipase NTE1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4B3.04c","synonyms":[{"name":"Spom972h-nte1","type":"exact"},{"name":"intracellular phospholipase B (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"neuropathy target esterase homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USJ4"}


id: PBO:0050534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"15-hydroxyprostaglandin dehydrogenase","termid":"PBO:0050534"}


id: MONDO:0001710
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rupture in the wall of the extrahepatic or intrahepatic bile duct due to traumatic or pathologic processes.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bile duct disorder","termid":"MONDO:0002887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"perforation of bile duct","secondary_identifiers":["MEDGEN:56376","UMLS:C0156218","icd11.foundation:2011913010","SCTID:37439003","ICD10CM:K83.2","DOID:13409","ICD9:576.3"],"termid":"MONDO:0001710","xrefs":{"Monarch":{"xref_id":"0001710"}}}


id: MONDO:1010827
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Syndactyly that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndactyly, non-human animal","termid":"MONDO:1010160"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndactyly, cattle","secondary_identifiers":["OMIA:000963-9913"],"termid":"MONDO:1010827","xrefs":{"Monarch":{"xref_id":"1010827"}}}


id: MONDO:0001060
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An invasive adenocarcinoma confined to the mucosa or mucosa and submucosa of the gastric wall. The regional lymph nodes may or may not be involved. It usually occurs in the lesser curvature. The 5-year survival rate following resection is between 80 percent and 95 percent, and remains high even when lymph node metastases are present.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gastric adenocarcinoma","termid":"MONDO:0005036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"microinvasive gastric cancer","secondary_identifiers":["MEDGEN:138098","DOID:10541","NCIT:C27131","SCTID:276809004","UMLS:C0349530"],"synonyms":[{"name":"EGC","type":"exact"},{"name":"early gastric cancer","type":"exact"},{"name":"superficial gastric cancer","type":"exact"},{"name":"superficial spreading gastric cancer","type":"exact"},{"name":"surface gastric cancer","type":"exact"}],"termid":"MONDO:0001060","xrefs":{"Monarch":{"xref_id":"0001060"}}}


id: PBO:0079299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha tocopherol transfer protein","termid":"PBO:0079299"}


id: GO:0020008
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A large, club-shaped secretory organelle that forms part of the apical complex of an apicomplexan parasite, and consists of a bulbous body and a narrow electron-dense neck that extends through the conoid at the apical tip of the parasite. The rhoptry necks serve as ducts through which the contents of the rhoptries are secreted after attachment to the host has been completed and at the commencement of invasion. Rhoptry proteins function in the biogenesis and host organellar association of the parasitophorous vacuole.","definition_xrefs":["PMID:16002398","ISBN:0521664470","PMID:11801218"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"apical complex","termid":"GO:0020007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"rhoptry","secondary_identifiers":["Wikipedia:Rhoptry"],"synonyms":[{"name":"paired organelles","type":"related"},{"name":"toxoneme","type":"related"}],"termid":"GO:0020008"}


id: GO:0045939
data:
  {"annotated_genes":["SJAG_02104"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93359],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010895"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving steroids.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of steroid metabolic process","termid":"GO:0019218"},{"relation_name":"is_a","term_name":"negative regulation of lipid metabolic process","termid":"GO:0045833"},{"relation_name":"negatively_regulates","term_name":"steroid metabolic process","termid":"GO:0008202"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02104":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"negative regulation of steroid metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of steroid metabolic process","type":"exact"},{"name":"down-regulation of steroid metabolic process","type":"exact"},{"name":"downregulation of steroid metabolic process","type":"exact"},{"name":"inhibition of steroid metabolic process","type":"narrow"},{"name":"negative regulation of steroid metabolism","type":"exact"}],"termid":"GO:0045939","terms_by_termid":{"GO:0010895":null}}


id: PBO:0004174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER oxidoreductin Ero1a","termid":"PBO:0004174"}


id: MONDO:0100174
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing age related macular degeneration.","definition_xrefs":["MONDO:patterns/inherited_susceptibility"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"age related macular degeneration, susceptibility to","termid":"MONDO:0100174","xrefs":{"Monarch":{"xref_id":"0100174"}}}


id: GO:0042593
data:
  {"annotated_genes":["SJAG_04312","SJAG_00574","SJAG_04026","SJAG_02444","SJAG_01699","SJAG_03081","SJAG_01254","SJAG_01754","SJAG_04334","SJAG_04495","SJAG_00472"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93705,101373,106398,105452,106048,108580,115134,109091,116167],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010619"},{"annotations":[77862,71967],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001678"}]},"cv_name":"biological_process","definition":"Any process involved in the maintenance of an internal steady state of glucose within an organism or cell.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate homeostasis","termid":"GO:0033500"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00472":null,"SJAG_00574":null,"SJAG_01254":null,"SJAG_01699":null,"SJAG_01754":null,"SJAG_02444":null,"SJAG_03081":null,"SJAG_04026":null,"SJAG_04312":null,"SJAG_04334":null,"SJAG_04495":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glucose homeostasis","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0042593","terms_by_termid":{"GO:0001678":null,"GO:0010619":null}}


id: MONDO:0010991
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"visceral heterotaxy","termid":"MONDO:0018677"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"laterality defects, autosomal dominant","secondary_identifiers":["UMLS:C1832813","OMIM:601086","MEDGEN:322042","MESH:C563391"],"synonyms":[{"name":"laterality defects dominant","type":"related"},{"name":"laterality defects, autosomal dominant","type":"exact"}],"termid":"MONDO:0010991","xrefs":{"Monarch":{"xref_id":"0010991"}}}


id: FYPO:0007929
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to phloxine B. Cells stop growing (and may die) at a concentration of phloxine B that allows wild type cells to grow.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0002683","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to phloxine B","synonyms":[{"name":"sensitive to phloxine B during vegetative growth","type":"exact"}],"termid":"FYPO:0007929"}


id: GO:0001058
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase V specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.","definition_xrefs":["GOC:txnOH"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA polymerase V activity (obsolete GO:0001058)","synonyms":[{"name":"DNA-directed RNA polymerase activity involved in transcription from RNA polymerase V promoter","type":"exact"}],"termid":"GO:0001058"}


id: GO:1990535
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The organization process that preserves a neuron projection in a stable functional or structural state. A neuron projection is a prolongation or process extending from a nerve cell, e.g. an axon or dendrite.","definition_xrefs":["GOC:kmv","PMID:25359212"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection organization","termid":"GO:0106027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuron projection maintenance","synonyms":[{"name":"axon homeostasis","type":"related"},{"name":"axon maintenance","type":"related"},{"name":"neurite maintenance","type":"narrow"},{"name":"neuron process maintenance","type":"exact"},{"name":"neuron protrusion maintenance","type":"exact"},{"name":"neuronal cell projection maintenance","type":"exact"}],"termid":"GO:1990535"}


id: MONDO:0003520
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete malignant acrospiroma (obsolete MONDO:0003520)","termid":"MONDO:0003520","xrefs":{"Monarch":{"xref_id":"0003520"}}}


id: PBO:0086040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function involved in DNA repair","termid":"PBO:0086040"}


id: SO:0001591
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that reverts the sequence of a previous frameshift mutation back to the initial frame.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"frameshift_variant","termid":"SO:0001589"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frame_restoring_variant","synonyms":[{"name":"frame restoring variant","type":"exact"}],"termid":"SO:0001591"}


id: PBO:0066630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulatory subunit of type II PKA R-subunit domain containing 1","termid":"PBO:0066630"}


id: PBO:0050091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1","termid":"PBO:0050091"}


id: GO:2001214
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vasculogenesis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell differentiation","termid":"GO:0045597"},{"relation_name":"is_a","term_name":"regulation of vasculogenesis","termid":"GO:2001212"},{"relation_name":"positively_regulates","term_name":"vasculogenesis","termid":"GO:0001570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vasculogenesis","synonyms":[{"name":"positive regulation of vascular morphogenesis","type":"exact"}],"termid":"GO:2001214"}


id: MONDO:0008241
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycoprotein 1","secondary_identifiers":["MEDGEN:401424","UMLS:C1868352","OMIM:172290"],"synonyms":[{"name":"PGP1","type":"related"},{"name":"phosphoglycoprotein 1","type":"exact"},{"name":"phosphoglycoprotein type 1","type":"exact"}],"termid":"MONDO:0008241","xrefs":{"Monarch":{"xref_id":"0008241"}}}


id: MONDO:1012640
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any von Willebrand disease that occurs in dogs and is characterized by low plasma vWF concentrations and mild to moderate bleeding symptoms due to a mutation in the VWF gene.","definition_xrefs":["OMIA:001057-9615"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"Von Willebrand disease, dog","termid":"MONDO:1011612"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand disease I, dog","synonyms":[{"name":"type 1 von Willebrand disease, dog","type":"related"},{"name":"vWDI","type":"exact"}],"termid":"MONDO:1012640","xrefs":{"Monarch":{"xref_id":"1012640"}}}


id: MONDO:0006569
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A nonspecific term used to denote any cutaneous lesion or group of lesions, or eruptions of any type on the leg. (From Stedman, 25th ed)","definition_xrefs":["MESH:D007868"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin disorder","termid":"MONDO:0005093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"leg dermatosis","secondary_identifiers":["DOID:3142","UMLS:C0023219","MEDGEN:9700"],"termid":"MONDO:0006569","xrefs":{"Monarch":{"xref_id":"0006569"}}}


id: GO:0046841
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving trisporic acid, a carotenoic acid derivative used as a pheromone in some species of Zygomycota.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"trisporic acid metabolic process","synonyms":[{"name":"trisporic acid metabolism","type":"exact"}],"termid":"GO:0046841"}


id: GO:0043381
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the rate of memory T cell differentiation.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune effector process","termid":"GO:0002698"},{"relation_name":"is_a","term_name":"regulation of memory T cell differentiation","termid":"GO:0043380"},{"relation_name":"is_a","term_name":"negative regulation of T cell differentiation","termid":"GO:0045581"},{"relation_name":"is_a","term_name":"negative regulation of immune response","termid":"GO:0050777"},{"relation_name":"negatively_regulates","term_name":"memory T cell differentiation","termid":"GO:0043379"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of memory T cell differentiation","synonyms":[{"name":"down regulation of memory T cell differentiation","type":"exact"},{"name":"down-regulation of memory T cell differentiation","type":"exact"},{"name":"downregulation of memory T cell differentiation","type":"exact"},{"name":"inhibition of memory T cell differentiation","type":"narrow"},{"name":"negative regulation of memory T cell development","type":"related"},{"name":"negative regulation of memory T lymphocyte differentiation","type":"exact"},{"name":"negative regulation of memory T-cell differentiation","type":"exact"},{"name":"negative regulation of memory T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0043381"}


id: GO:0016791
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