# terms

id: GO:0002608
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of myeloid dendritic cell antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of dendritic cell antigen processing and presentation","termid":"GO:0002605"},{"relation_name":"is_a","term_name":"regulation of myeloid dendritic cell antigen processing and presentation","termid":"GO:0002607"},{"relation_name":"negatively_regulates","term_name":"myeloid dendritic cell antigen processing and presentation","termid":"GO:0002469"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of myeloid dendritic cell antigen processing and presentation","synonyms":[{"name":"down regulation of myeloid dendritic cell antigen processing and presentation","type":"exact"},{"name":"down-regulation of myeloid dendritic cell antigen processing and presentation","type":"exact"},{"name":"downregulation of myeloid dendritic cell antigen processing and presentation","type":"exact"},{"name":"inhibition of myeloid dendritic cell antigen processing and presentation","type":"narrow"}],"termid":"GO:0002608"}


id: PBO:0069583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 857, pseudogene","termid":"PBO:0069583"}


id: MONDO:0015382
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cysts and fistulae of the face and oral cavity that involves the lower lip.","definition_xrefs":["MONDO:design_pattern"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lip disorder","termid":"MONDO:0004748"},{"relation_name":"is_a","term_name":"cysts and fistulae of the face and oral cavity","termid":"MONDO:0015476"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lower lip fistula","secondary_identifiers":["Orphanet:141064","icd11.foundation:230523092","UMLS:C1274792","MEDGEN:698113","GARD:19940"],"synonyms":[{"name":"cysts and fistulae of the face and oral cavity of lower lip","type":"exact"},{"name":"lower lip cysts and fistulae of the face and oral cavity","type":"exact"}],"termid":"MONDO:0015382","xrefs":{"Monarch":{"xref_id":"0015382"}}}


id: PBO:0027377
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_vegetative_cell_with_nuclear_pore_aggregation_in_cytoplasm_during_mitotic_telophase","termid":"PBO:0027377"}


id: GO:0052175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism involving carbohydrates within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete metabolism by symbiont of host carbohydrate (obsolete GO:0052175)","termid":"GO:0052175"}


id: PBO:0113095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Diacylglycerol kinase; localized to the endoplasmic reticulum (ER); overproduction induces enlargement of ER-like membrane structures, stimulates the mevalonate/ergosterol pathway and suppresses a temperature-sensitive sly1 mutation; contains a CTP transferase domain","termid":"PBO:0113095"}


id: GO:0043316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated exocytosis of secretory granules containing preformed mediators such as perforin and granzymes by a cytotoxic T cell.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte degranulation","termid":"GO:0043299"},{"relation_name":"part_of","term_name":"T cell mediated cytotoxicity","termid":"GO:0001913"},{"relation_name":"part_of","term_name":"T cell activation involved in immune response","termid":"GO:0002286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"cytotoxic T cell degranulation","synonyms":[{"name":"cytotoxic T cell granule exocytosis","type":"exact"},{"name":"cytotoxic T lymphocyte degranulation","type":"exact"},{"name":"cytotoxic T lymphocyte granule exocytosis","type":"exact"},{"name":"cytotoxic T-cell degranulation","type":"exact"},{"name":"cytotoxic T-cell granule exocytosis","type":"exact"},{"name":"cytotoxic T-lymphocyte degranulation","type":"exact"},{"name":"cytotoxic T-lymphocyte granule exocytosis","type":"exact"}],"termid":"GO:0043316"}


id: GO:0032597
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a B cell receptor into a membrane raft.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B cell receptor transport within lipid bilayer","termid":"GO:0032595"},{"relation_name":"is_a","term_name":"protein transport into membrane raft","termid":"GO:0032596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150","GO:0061024"],"is_obsolete":false,"name":"B cell receptor transport into membrane raft","synonyms":[{"name":"B cell receptor translocation into membrane raft","type":"exact"},{"name":"B cell receptor transport into lipid raft","type":"exact"},{"name":"BCR translocation into membrane raft","type":"exact"},{"name":"BCR transport into membrane raft","type":"exact"}],"termid":"GO:0032597"}


id: PBO:0086477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative mitochondrial protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies","termid":"PBO:0086477"}


id: GO:0045993
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involving iron that stops, prevents or reduces the rate of translational initiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translational initiation by iron","termid":"GO:0006447"},{"relation_name":"is_a","term_name":"negative regulation of translational initiation","termid":"GO:0045947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of translational initiation by iron","synonyms":[{"name":"down regulation of translational initiation by iron","type":"exact"},{"name":"down-regulation of translational initiation by iron","type":"exact"},{"name":"downregulation of translational initiation by iron","type":"exact"},{"name":"inhibition of translational initiation by iron","type":"narrow"}],"termid":"GO:0045993"}


id: MONDO:1011661
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"digestive system disorder, non-human animal","termid":"MONDO:1011311"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"esophageal motility disorder, non-human animal","secondary_identifiers":["OMIA:000738"],"termid":"MONDO:1011661","xrefs":{"Monarch":{"xref_id":"1011661"}}}


id: PBO:0091694
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pdr1-Related Transcription factor","termid":"PBO:0091694"}


id: PBO:0060425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NGFI-A binding protein 1","termid":"PBO:0060425"}


id: PBO:0062970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) binding protein cytoplasmic 1 pseudogene 13","termid":"PBO:0062970"}


id: PBO:0091536
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae TPM1","termid":"PBO:0091536"}


id: PBO:0061598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUAK family kinase 2","termid":"PBO:0061598"}


id: MOD:01997
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue amino or imino hydrogen with a butanoyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"butanoylated residue","termid":"MOD:01996"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-butanoylated residue","synonyms":[{"name":"N-butanoyl","type":"exact"},{"name":"N-butanoylation","type":"exact"},{"name":"N-butyryl","type":"exact"},{"name":"N-butyrylation","type":"exact"},{"name":"NButRes","type":"exact"}],"termid":"MOD:01997"}


id: GO:0003184
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the structure of the pulmonary valve is generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart valve morphogenesis","termid":"GO:0003179"},{"relation_name":"part_of","term_name":"pulmonary valve development","termid":"GO:0003177"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pulmonary valve morphogenesis","termid":"GO:0003184"}


id: PBO:0043047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHORDC1 pseudogene 4","termid":"PBO:0043047"}


id: PBO:0056571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MCPH1 divergent transcript","termid":"PBO:0056571"}


id: GO:0045622
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of T-helper cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immune effector process","termid":"GO:0002697"},{"relation_name":"is_a","term_name":"regulation of CD4-positive, alpha-beta T cell differentiation","termid":"GO:0043370"},{"relation_name":"is_a","term_name":"regulation of immune response","termid":"GO:0050776"},{"relation_name":"regulates","term_name":"T-helper cell differentiation","termid":"GO:0042093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of T-helper cell differentiation","synonyms":[{"name":"regulation of T-helper cell development","type":"related"}],"termid":"GO:0045622"}


id: FYPO:0008085
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which autophagic degradation of the nucleus is abolished.","direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal macroautophagy","termid":"FYPO:0000163"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal nucleophagy","termid":"FYPO:0008085"}


id: GO:0062141
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein-containing complex that functions with the RNA exosome and contributes to the degradation of abberant transcripts.","definition_xrefs":["PMID:29844170","PMID:21855801"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"nuclear exosome targeting complex","synonyms":[{"name":"NEXT complex","type":"exact"}],"termid":"GO:0062141"}


id: PBO:0060837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEDD8 pseudogene 1","termid":"PBO:0060837"}


id: PBO:0050816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyaluronidase 1","termid":"PBO:0050816"}


id: SO:0000127
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is silenced.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"silenced","termid":"SO:0000893"},{"relation_name":"is_a","term_name":"gene","termid":"SO:0000704"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"silenced_gene","synonyms":[{"name":"silenced gene","type":"exact"}],"termid":"SO:0000127"}


id: GO:0031342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of cell killing.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell killing","termid":"GO:0031341"},{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"negatively_regulates","term_name":"cell killing","termid":"GO:0001906"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell killing","secondary_identifiers":["Reactome:R-HSA-9664433"],"synonyms":[{"name":"down regulation of cell killing","type":"exact"},{"name":"down-regulation of cell killing","type":"exact"},{"name":"downregulation of cell killing","type":"exact"},{"name":"inhibition of cell killing","type":"narrow"}],"termid":"GO:0031342"}


id: GO:1990714
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of galactose from UDP-galactose to hydroxyproline residues present in the peptide backbone.","definition_xrefs":["PMID:25600942"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactosyltransferase activity","termid":"GO:0008378"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016757","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"hydroxyproline O-galactosyltransferase activity","synonyms":[{"name":"HPGT","type":"exact"}],"termid":"GO:1990714"}


id: PBO:0013453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly protein Cox1102/ mitochondrial ribosomal protein Rsm2202, fusion protein (predicted)","termid":"PBO:0013453"}


id: MOD:00213
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-serine residue to the polymer chondroitin sulfate by a D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl tetrasaccharide.","definition_xrefs":["PubMed:1898736","RESID:AA0208","PubMed:1794445","PubMed:3472204"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosyl-L-serine","termid":"MOD:00002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"chondroitin sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine","synonyms":[{"name":"chondroitin 4-sulfate (chondroitin sulfate A)","type":"exact"},{"name":"chondroitin 6-sulfate (chondroitin sulfate C)","type":"exact"},{"name":"chondroitin sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine","type":"exact"},{"name":"poly[beta-1,4-D-glucopyranuronosyl-beta-1,3-(2-acetamido-2-deoxy-4-sulfate-D-galactosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine; poly[beta-1,4-D-glucopyranuronosyl-beta-1,3-(2-acetamido-2-deoxy-6-sulfate D-galactosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine","type":"exact"}],"termid":"MOD:00213"}


id: MONDO:0023255
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glossopalatine ankylosis micrognathia ear anomalies","termid":"MONDO:0023255","xrefs":{"Monarch":{"xref_id":"0023255"}}}


id: PBO:0086051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function required for growth on ethanol; contains a zinc finger region and has homology to human BRAP2, which is a cytoplasmic protein that binds nuclear localization sequences","termid":"PBO:0086051"}


id: PBO:0046517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER lipid raft associated 1","termid":"PBO:0046517"}


id: MONDO:0001940
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the lung parenchyma that is associated with pleurisy, inflammation of the pleura.","definition_xrefs":["MESH:D011001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pleurisy","termid":"MONDO:0000986"},{"relation_name":"is_a","term_name":"pneumonia","termid":"MONDO:0005249"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleuropneumonia","secondary_identifiers":["SCTID:60485005","icd11.foundation:1272236893","MEDGEN:18524","UMLS:C0032241","DOID:14319"],"termid":"MONDO:0001940","xrefs":{"Monarch":{"xref_id":"0001940"}}}


id: PBO:0056900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIER family member 2","termid":"PBO:0056900"}


id: GO:0033456
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes a GCG codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0003674","GO:0003723","GO:0005488","GO:0060090"],"is_obsolete":false,"name":"GCG codon-amino acid adaptor activity","synonyms":[{"name":"alanine tRNA","type":"related"}],"termid":"GO:0033456"}


id: MONDO:1011332
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mitochondrial disease that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-human animal disease","termid":"MONDO:0005583"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial disease, non-human animal","termid":"MONDO:1011332","xrefs":{"Monarch":{"xref_id":"1011332"}}}


id: PBO:0051104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 1-17 (pseudogene)","termid":"PBO:0051104"}


id: PBO:0089910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gmh5 alpha-1,2-galactosyltransferase","termid":"PBO:0089910"}


id: MONDO:1010861
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lysosomal storage disease that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal storage disease, non-human animal","termid":"MONDO:1010171"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysosomal storage disease, domestic cat","secondary_identifiers":["OMIA:000616-9685"],"termid":"MONDO:1010861","xrefs":{"Monarch":{"xref_id":"1010861"}}}


id: PBO:0047531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FYVE, RhoGEF and PH domain containing 5","termid":"PBO:0047531"}


id: GO:0003114
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the secretion of norepinephrine into the bloodstream increases the rate of heart muscle contraction.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of heart rate by norepinephrine","termid":"GO:0003066"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of heart rate by circulating norepinephrine","synonyms":[{"name":"positive regulation of heart rate by circulating noradrenaline","type":"exact"}],"termid":"GO:0003114"}


id: PBO:0039072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argonaute RISC component 4","termid":"PBO:0039072"}


id: PBO:0028874
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_poly(A)_RNA_binding","termid":"PBO:0028874"}


id: GO:0034169
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of toll-like receptor 10 signaling pathway.","definition_xrefs":["PMID:17328678","PMID:16551253","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of toll-like receptor 10 signaling pathway","termid":"GO:0034167"},{"relation_name":"is_a","term_name":"positive regulation of pattern recognition receptor signaling pathway","termid":"GO:0062208"},{"relation_name":"positively_regulates","term_name":"toll-like receptor 10 signaling pathway","termid":"GO:0034166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of toll-like receptor 10 signaling pathway","synonyms":[{"name":"positive regulation of TLR10 signaling pathway","type":"exact"},{"name":"positive regulation of toll-like receptor 10 signalling pathway","type":"exact"}],"termid":"GO:0034169"}


id: PBO:0011103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AdoMet dependent proline dimethyltransferase involved in translation Tae1 (predicted)","termid":"PBO:0011103"}


id: GO:0032396
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a MHC class I protein complex to mediate signaling that inhibits activation of a lymphocyte.","definition_xrefs":["PMID:9597134","PMID:11858820","GOC:add","PMID:9368779"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MHC class I receptor activity","termid":"GO:0032393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"inhibitory MHC class I receptor activity","termid":"GO:0032396"}


id: PBO:0075781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRSF6 pseudogene 1","termid":"PBO:0075781"}


id: GO:0039658
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  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex containing TBK1 (TANK-binding kinase 1), IKBKE (I-Kappa-B kinase epsilon/IKKE/IKK-epsilon) and the DEAD box family RNA helicase DDX3.","definition_xrefs":["VZ:719","PMID:18636090"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"TBK1-IKKE-DDX3 complex","synonyms":[{"name":"TBK1-IKBKE-DDX3 complex","type":"exact"}],"termid":"GO:0039658"}


id: PBO:0051828
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon regulatory factor 3","termid":"PBO:0051828"}


id: PBO:0028175
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mating_type_switching_resulting_in_duplication_or_deletion_in_mating-type_region","termid":"PBO:0028175"}


id: PBO:0066235
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 43","termid":"PBO:0066235"}


id: PBO:0064759
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPIC antisense RNA 1","termid":"PBO:0064759"}


id: PBO:0053832
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1097","termid":"PBO:0053832"}


id: GO:0001858
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id: PBO:0052263
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine demethylase 3A","termid":"PBO:0052263"}


id: GO:0045786
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id: PATO:0001166
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id: MONDO:1012931
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary chondrodysplasia that occurs in cattle due to a mutation in the EVC2 gene.","definition_xrefs":["PMID:24733244"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteochondrodysplasia, non-human animal","termid":"MONDO:1010306"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondrodysplasia, EVC2-related, cattle","secondary_identifiers":["OMIA:002540-9913"],"synonyms":[{"name":"Ellis-van Creveld Syndrome, cattle","type":"related"},{"name":"bovine chondrodysplastic dwarfism","type":"related"}],"termid":"MONDO:1012931","xrefs":{"Monarch":{"xref_id":"1012931"}}}


id: GO:1990378
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  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex capable of sequence-specific DNA binding RNA polymerase II transcription factor activity through binding to a symmetrical DNA sequence (E-boxes) (5'-CACGTG-3'). Found in a variety of viral and cellular promoters.","definition_xrefs":["PMID:8576131","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulator complex","termid":"GO:0090575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"upstream stimulatory factor complex","synonyms":[{"name":"USF complex","type":"exact"},{"name":"USF1 homodimer","type":"narrow"},{"name":"USF1-USF2 heterodimer","type":"narrow"},{"name":"USF2 homodimer","type":"narrow"}],"termid":"GO:1990378"}


id: PBO:0074976
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 114-18","termid":"PBO:0074976"}


id: GO:0035149
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Creation of the central hole of a tube in an open tracheal system through which gases flow.","definition_xrefs":["GOC:mtg_sensu","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube formation","termid":"GO:0035148"},{"relation_name":"is_a","term_name":"regulation of tube architecture, open tracheal system","termid":"GO:0035152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lumen formation, open tracheal system","synonyms":[{"name":"tracheal lumen formation","type":"exact"}],"termid":"GO:0035149"}


id: MONDO:0013257
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"leprosy","termid":"MONDO:0005124"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leprosy, susceptibility to, 6","secondary_identifiers":["MEDGEN:462026","OMIM:613407","UMLS:C3150676"],"synonyms":[{"name":"LPRS6","type":"exact"},{"name":"leprosy, susceptibility to, 6","type":"exact"}],"termid":"MONDO:0013257","xrefs":{"Monarch":{"xref_id":"0013257"}}}


id: MONDO:0012274
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"acromesomelic dysplasia","termid":"MONDO:0019696"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"acromesomelic dysplasia 3","secondary_identifiers":["DOID:0081237","GARD:10077","MEDGEN:904735","MESH:C537913","OMIM:609441","UMLS:C4225404"],"synonyms":[{"name":"AMDD","type":"exact"},{"name":"acromesomelic dysplasia 3","type":"exact"},{"name":"acromesomelic dysplasia, Demirhan type","type":"exact"},{"name":"chondrodysplasia acromesomelic with genital anomalies","type":"related"},{"name":"chondrodysplasia, acromesomelic, with or without genital anomalies","type":"exact"}],"termid":"MONDO:0012274","xrefs":{"Monarch":{"xref_id":"0012274"}}}


id: PBO:0050150
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 3 pseudogene 6","termid":"PBO:0050150"}


id: PBO:0046261
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein complex subunit 1","termid":"PBO:0046261"}


id: GO:0045258
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The enzyme, located in the plasma membrane, that catalyzes the oxidation of succinate and ubiquinone to fumarate and ubiquinol; involved in aerobic respiration, repressed in anaerobic respiration.","definition_xrefs":["ISBN:0198547684","GOC:kd","GOC:mtg_sensu"],"gene_count":0,"genotype_count":0,"name":"obsolete plasma membrane succinate dehydrogenase complex (ubiquinone) (obsolete GO:0045258)","termid":"GO:0045258"}


id: PBO:0062062
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily Z member 1","termid":"PBO:0062062"}


id: GO:0031613
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id: MONDO:0006564
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inflammatory skin condition caused by direct contact between the skin and an irritating substance. It is typically manifested by erythema, mild edema, and scaling at the affected site.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"contact dermatitis","termid":"MONDO:0005480"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"irritant dermatitis","secondary_identifiers":["MESH:D017453","UMLS:C0162823","NCIT:C27151","ICD9:692.9","DOID:2772","EFO:1000718","MEDGEN:56513","SCTID:110979008"],"synonyms":[{"name":"irritant contact dermatitis","type":"exact"},{"name":"primary irritant dermatitis","type":"exact"}],"termid":"MONDO:0006564","xrefs":{"Monarch":{"xref_id":"0006564"}}}


id: PBO:0003496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin C-terminal hydrolase Uch2","termid":"PBO:0003496"}


id: GO:0047828
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-lyxose = D-xylulose.","definition_xrefs":["RHEA:14201","EC:5.3.1.15"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, interconverting aldoses and ketoses","termid":"GO:0016861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"D-lyxose ketol-isomerase activity","secondary_identifiers":["MetaCyc:D-LYXOSE-KETOL-ISOMERASE-RXN","KEGG_REACTION:R01898"],"synonyms":[{"name":"D-lyxose aldose-ketose-isomerase activity","type":"related"},{"name":"D-lyxose isomerase activity","type":"related"}],"termid":"GO:0047828"}


id: FYECO:0000312
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which SAM (S-adenosyl-L-methionine) was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ SAM","synonyms":[{"name":"+ S-adenosyl-L-methionine","type":"exact"},{"name":"+ S-adenosylmethionine","type":"exact"}],"termid":"FYECO:0000312"}


id: MONDO:0045003
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease or disorder that involves the scrotum.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"male reproductive system disorder","termid":"MONDO:0003150"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scrotal disorder","secondary_identifiers":["MEDGEN:541586","UMLS:C0268919","SCTID:49701002"],"synonyms":[{"name":"disease of scrotum","type":"exact"},{"name":"disease or disorder of scrotum","type":"exact"},{"name":"disorder of scrotum","type":"exact"},{"name":"scrotum disease","type":"exact"},{"name":"scrotum disease or disorder","type":"exact"}],"termid":"MONDO:0045003","xrefs":{"Monarch":{"xref_id":"0045003"}}}


id: GO:0017027
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete transmembrane receptor protein serine/threonine kinase receptor-associated protein activity (obsolete GO:0017027)","synonyms":[{"name":"transmembrane receptor protein serine/threonine kinase receptor-associated protein activity","type":"exact"}],"termid":"GO:0017027"}


id: MONDO:0023176
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"poisoning","termid":"MONDO:0029000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formaldehyde poisoning","secondary_identifiers":["MESH:C537268","NORD:1155","GARD:2361"],"synonyms":[{"name":"Formalin intoxication","type":"related"},{"name":"Formalin toxicity","type":"related"},{"name":"formaldehyde exposure","type":"related"},{"name":"formaldehyde toxicity","type":"related"}],"termid":"MONDO:0023176","xrefs":{"Monarch":{"xref_id":"0023176"}}}


id: PBO:0036046
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_single_cell_division,_multiseptate_cell","termid":"PBO:0036046"}


id: PBO:0076322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SYNPR antisense RNA 1","termid":"PBO:0076322"}


id: GO:0035859
data:
  {"annotated_genes":["SJAG_01184","SJAG_00561","SJAG_00209","SJAG_02424","SJAG_04496","SJAG_03907","SJAG_00824","SJAG_02765"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[75308,81708,89874,75415],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990130"},{"annotations":[91283,77162,89875,90170,108524],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0061700"}]},"cv_name":"cellular_component","definition":"A GTPase-activating protein (GAP) complex that regulates TORC1 signaling by interacting with the Rag GTPase. In S. cerevisiae the complex contains Seh1p, Sec13p, Npr2p, Npr3p, Iml1p, Mtc5p, Rtc1p, and Sea4p.","definition_xrefs":["PMID:21454883","PMID:23974112","GOC:jh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00209":null,"SJAG_00561":null,"SJAG_00824":null,"SJAG_01184":null,"SJAG_02424":null,"SJAG_02765":null,"SJAG_03907":null,"SJAG_04496":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"Seh1-associated complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"GATOR complex","type":"exact"},{"name":"SEA complex","type":"exact"}],"termid":"GO:0035859","terms_by_termid":{"GO:0061700":null,"GO:1990130":null}}


id: PBO:0051600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 23 receptor","termid":"PBO:0051600"}


id: MONDO:0002762
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare variant of esophageal squamous cell carcinoma. It is an exophytic, cauliflower-like or papillary mass that can arise in any part of the esophagus. This variant of squamous cell carcinoma grows slowly and invades locally, with a very low metastasizing potential. (WHO)","definition_xrefs":["NCIT:C27420"],"direct_ancestors":[{"relation_name":"is_a","term_name":"esophageal squamous cell carcinoma","termid":"MONDO:0005580"},{"relation_name":"is_a","term_name":"verrucous carcinoma","termid":"MONDO:0006006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"esophagus verrucous carcinoma","secondary_identifiers":["DOID:3747","MEDGEN:272594","UMLS:C1333470"],"synonyms":[{"name":"esophageal verrucous cancer","type":"exact"},{"name":"esophageal verrucous carcinoma","type":"exact"},{"name":"esophagus verrucous carcinoma","type":"exact"},{"name":"verrucous carcinoma of esophagus","type":"exact"},{"name":"verrucous carcinoma of oesophagus","type":"exact"},{"name":"verrucous carcinoma of the esophagus","type":"exact"},{"name":"verrucous carcinoma of the oesophagus","type":"exact"}],"termid":"MONDO:0002762","xrefs":{"Monarch":{"xref_id":"0002762"}}}


id: MONDO:0008640
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lymphocytic vasculitis is one of several skin conditions which are collectively referred to as cutaneous vasculitis. In lymphocytic vasculitis, white blood cells (lymphocytes) cause damage to blood vessels in the skin. This condition is thought to be caused by a number of factors, but the exact cause of most cases is not known. This disease can present with a variety of symptoms, depending on the size, location, and severity of the affected area. In a minority of patients, cutaneous vasculitis can be part of a more severe vasculitis affecting other organs in the body - this is known as systemic vasculitis.","definition_xrefs":["GARD:0006941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vasculitis","termid":"MONDO:0018882"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"vasculitis, lymphocytic, nodular","secondary_identifiers":["OMIM:192310","UMLS:C1860519","MESH:C566008","GARD:6941","MEDGEN:348635"],"synonyms":[{"name":"lymphocytic vasculitis","type":"related"},{"name":"vasculitis lymphocytic, nodular","type":"related"},{"name":"vasculitis, lymphocytic, nodular","type":"exact"}],"termid":"MONDO:0008640","xrefs":{"Monarch":{"xref_id":"0008640"}}}


id: MONDO:0032826
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial nephrotic syndrome","termid":"MONDO:0002350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"nephrotic syndrome, type 21","secondary_identifiers":["DOID:0112267","MEDGEN:1684676","UMLS:C5231498","OMIM:618594"],"synonyms":[{"name":"NEPHROTIC SYNDROME, TYPE 21","type":"related"},{"name":"NPHS21","type":"related"}],"termid":"MONDO:0032826","xrefs":{"Monarch":{"xref_id":"0032826"}}}


id: MONDO:0022714
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chester porphyria is a unique type of porphyria with the signs and symptoms of acute intermittent porphyria (AIP) and the biochemical defects of both AIP and variegate porphyria (VP). Chester porphyria does not conform to any of the recognized types of acute porphyria. The symptoms associated with Chester porphyria are similar to those observed in other acute porphyrias. Treatment is symptomatic.","definition_xrefs":["GARD:0010185"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited porphyria","termid":"MONDO:0019142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0019142"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005093","MONDO:0019142"],"is_obsolete":false,"name":"chester porphyria","secondary_identifiers":["UMLS:C0268322","OMIM:176010","MEDGEN:82789"],"synonyms":[{"name":"PORC","type":"related"},{"name":"porphyria, Chester type","type":"related"}],"termid":"MONDO:0022714","xrefs":{"Monarch":{"xref_id":"0022714"}}}


id: GO:1905451
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of Fc-gamma receptor signaling pathway involved in phagocytosis.","definition_xrefs":["GO_REF:0000058","PMID:18832707","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of immune effector process","termid":"GO:0002699"},{"relation_name":"is_a","term_name":"positive regulation of phagocytosis","termid":"GO:0050766"},{"relation_name":"is_a","term_name":"positive regulation of Fc receptor mediated stimulatory signaling pathway","termid":"GO:0060369"},{"relation_name":"is_a","term_name":"regulation of Fc-gamma receptor signaling pathway involved in phagocytosis","termid":"GO:1905449"},{"relation_name":"positively_regulates","term_name":"Fc-gamma receptor signaling pathway involved in phagocytosis","termid":"GO:0038096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0023052","GO:0016192"],"is_obsolete":false,"name":"positive regulation of Fc-gamma receptor signaling pathway involved in phagocytosis","synonyms":[{"name":"activation of Fc gamma receptor-dependent phagocytosis","type":"narrow"},{"name":"activation of Fc-gamma receptor signaling pathway involved in phagocytosis","type":"narrow"},{"name":"activation of Fc-gamma receptor signalling pathway involved in phagocytosis","type":"narrow"},{"name":"activation of Fcgamma receptor-mediated phagocytosis","type":"narrow"},{"name":"activation of IgG-mediated phagocytosis","type":"narrow"},{"name":"positive regulation of Fc gamma receptor-dependent phagocytosis","type":"exact"},{"name":"positive regulation of Fc-gamma receptor signalling pathway involved in phagocytosis","type":"exact"},{"name":"positive regulation of Fcgamma receptor-mediated phagocytosis","type":"exact"},{"name":"positive regulation of IgG-mediated phagocytosis","type":"exact"},{"name":"up regulation of Fc gamma receptor-dependent phagocytosis","type":"exact"},{"name":"up regulation of Fc-gamma receptor signaling pathway involved in phagocytosis","type":"exact"},{"name":"up regulation of Fc-gamma receptor signalling pathway involved in phagocytosis","type":"exact"},{"name":"up regulation of Fcgamma receptor-mediated phagocytosis","type":"exact"},{"name":"up regulation of IgG-mediated phagocytosis","type":"exact"},{"name":"up-regulation of Fc gamma receptor-dependent phagocytosis","type":"exact"},{"name":"up-regulation of Fc-gamma receptor signaling pathway involved in phagocytosis","type":"exact"},{"name":"up-regulation of Fc-gamma receptor signalling pathway involved in phagocytosis","type":"exact"},{"name":"up-regulation of Fcgamma receptor-mediated phagocytosis","type":"exact"},{"name":"up-regulation of IgG-mediated phagocytosis","type":"exact"},{"name":"upregulation of Fc gamma receptor-dependent phagocytosis","type":"exact"},{"name":"upregulation of Fc-gamma receptor signaling pathway involved in phagocytosis","type":"exact"},{"name":"upregulation of Fc-gamma receptor signalling pathway involved in phagocytosis","type":"exact"},{"name":"upregulation of Fcgamma receptor-mediated phagocytosis","type":"exact"},{"name":"upregulation of IgG-mediated phagocytosis","type":"exact"}],"termid":"GO:1905451"}


id: PBO:0081053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZCCHC10 pseudogene 1","termid":"PBO:0081053"}


id: GO:0097661
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An SCF ubiquitin ligase complex in which the F-box protein is Ctf13 in S. cerevisiae.","definition_xrefs":["PMID:14747994","GOC:jd","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SCF ubiquitin ligase complex","termid":"GO:0019005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"SCF-Ctf13 ubiquitin ligase complex","termid":"GO:0097661"}


id: PBO:0070315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY3 pseudogene 4","termid":"PBO:0070315"}


id: MONDO:0016852
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome X disorder","termid":"MONDO:0700027"},{"relation_name":"is_a","term_name":"uniparental disomy","termid":"MONDO:0700086"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paternal uniparental disomy of chromosome X","secondary_identifiers":["UMLS:C5191049","MEDGEN:1683101","Orphanet:261524","icd11.foundation:444322860","GARD:20784"],"synonyms":[{"name":"UPD(X)pat","type":"exact"},{"name":"paternal uniparental disomy of chromosome type X","type":"exact"}],"termid":"MONDO:0016852","xrefs":{"Monarch":{"xref_id":"0016852"}}}


id: MONDO:0024884
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that has spread to the bone from another, primary anatomic site. Bone is one of the most frequent sites of metastatic carcinoma. Common sites of origin include lung, breast, and prostate.","definition_xrefs":["NCIT:C36082"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone carcinoma","termid":"MONDO:0002415"},{"relation_name":"is_a","term_name":"metastatic carcinoma","termid":"MONDO:0024879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"metastatic carcinoma in the bone","secondary_identifiers":["MEDGEN:195970","UMLS:C0700110"],"synonyms":[{"name":"metastatic carcinoma in the bone","type":"exact"},{"name":"metastatic carcinoma to the bone","type":"exact"}],"termid":"MONDO:0024884","xrefs":{"Monarch":{"xref_id":"0024884"}}}


id: MONDO:0005719
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Virus diseases caused by the coronavirus genus. Some specifics include transmissible enteritis of turkeys (enteritis, transmissible, of turkeys); feline infectious peritonitis; and transmissible gastroenteritis of swine (gastroenteritis, transmissible, of swine).","definition_xrefs":["MESH:D018352"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Coronaviridae infectious disease","termid":"MONDO:0005718"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Coronavinae infectious disease","secondary_identifiers":["EFO:0007224"],"termid":"MONDO:0005719","xrefs":{"Monarch":{"xref_id":"0005719"}}}


id: MONDO:0003328
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that arises from the fallopian tube and originates from mesothelial cells. It is characterized by the presence of gland-like structures that are lined by flat or cuboidal cells. It is usually discovered as an incidental finding.","definition_xrefs":["NCIT:C40129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fallopian tube benign neoplasm","termid":"MONDO:0000645"},{"relation_name":"is_a","term_name":"benign mesothelioma","termid":"MONDO:0002373"},{"relation_name":"is_a","term_name":"adenomatoid tumor","termid":"MONDO:0004230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fallopian tube adenomatoid tumor","secondary_identifiers":["DOID:5196","MEDGEN:273291","UMLS:C1517110"],"synonyms":[{"name":"fallopian tube adenomatoid tumor","type":"exact"}],"termid":"MONDO:0003328","xrefs":{"Monarch":{"xref_id":"0003328"}}}


id: PBO:0062993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase C and casein kinase substrate in neurons 2","termid":"PBO:0062993"}


id: MONDO:0957481
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"pregnancy associated osteoporosis","termid":"MONDO:0100194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"idiopathic pregnancy-associated osteoporosis","secondary_identifiers":["UMLS:C5782297","MEDGEN:1843391","Orphanet:647823"],"termid":"MONDO:0957481","xrefs":{"Monarch":{"xref_id":"0957481"}}}


id: GO:0035688
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The passage of a T-helper 1 cell between the tight junctions of endothelial cells lining blood vessels, typically the fourth and final step of cellular extravasation. A T-helper 1 cell is a CD4-positive, alpha-beta T cell that has the phenotype T-bet-positive and produces interferon-gamma.","definition_xrefs":["CL:0000545","GOC:BHF","PMID:10477596"],"direct_ancestors":[{"relation_name":"is_a","term_name":"helper T cell diapedesis","termid":"GO:0035685"},{"relation_name":"part_of","term_name":"T-helper 1 cell extravasation","termid":"GO:0035687"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T-helper 1 cell diapedesis","synonyms":[{"name":"Th1 cell diapedesis","type":"exact"}],"termid":"GO:0035688"}


id: FYPO:0006180
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which microtubule polymerization, i.e. the addition of tubulin dimers, occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah","GO:0046785"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule polymerization during vegetative growth","termid":"FYPO:0004614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000054"],"is_obsolete":false,"name":"increased microtubule polymerization","synonyms":[{"name":"increased microtubule growth","type":"exact"},{"name":"increased microtubule polymerisation","type":"exact"},{"name":"increased microtubule polymerization","type":"related"},{"name":"increased microtubule polymerization during mitotic cell cycle","type":"related"},{"name":"increased microtubule polymerization during vegetative growth","type":"exact"}],"termid":"FYPO:0006180"}


id: MONDO:1012900
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any xanthinuria that occurs in dogs due to a mutation in the XDH gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"xanthinuria, dog","termid":"MONDO:1011623"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"xanthinuria, XDH-related, dog","secondary_identifiers":["OMIA:002445-9615"],"synonyms":[{"name":"xanthinuria, type I, dog","type":"exact"}],"termid":"MONDO:1012900","xrefs":{"Monarch":{"xref_id":"1012900"}}}


id: GO:0002849
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of peripheral T cell tolerance induction.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of peripheral tolerance induction","termid":"GO:0002658"},{"relation_name":"is_a","term_name":"regulation of T cell tolerance induction","termid":"GO:0002664"},{"relation_name":"is_a","term_name":"regulation of T cell mediated immunity","termid":"GO:0002709"},{"relation_name":"regulates","term_name":"peripheral T cell tolerance induction","termid":"GO:0002458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of peripheral T cell tolerance induction","termid":"GO:0002849"}


id: MONDO:0010687
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nephrolithiasis","termid":"MONDO:0008171"},{"relation_name":"is_a","term_name":"inherited kidney disorder","termid":"MONDO:0100191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"nephrolithiasis, X-linked recessive, with renal failure","secondary_identifiers":["SCTID:236713006","DOID:0111798","GARD:15305","OMIM:310468","MEDGEN:96047","UMLS:C0403720","MESH:C562901"],"synonyms":[{"name":"XRN","type":"related"},{"name":"nephrolithiasis 1","type":"related"},{"name":"nephrolithiasis, X-linked recessive, type 1","type":"related"},{"name":"nephrolithiasis, X-linked recessive, with renal failure","type":"exact"},{"name":"nephrolithiasis, type i, X-linked recessive","type":"exact"},{"name":"urolithiasis, X-linked recessive, type 1","type":"related"}],"termid":"MONDO:0010687","xrefs":{"Monarch":{"xref_id":"0010687"}}}


id: MONDO:1011480
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Becker type muscular dystrophy that occurs in pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Becker type muscular dystrophy, non-human animal","termid":"MONDO:1011435"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Becker type muscular dystrophy, pig","secondary_identifiers":["OMIA:001888-9823"],"termid":"MONDO:1011480","xrefs":{"Monarch":{"xref_id":"1011480"}}}


id: PBO:0083288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; null mutant displays shortened telomeres; partially overlaps the uncharacterized ORF YMR031C","termid":"PBO:0083288"}


id: PBO:0071044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 46","termid":"PBO:0071044"}


id: MONDO:0045030
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"diarrheal disease","termid":"MONDO:0001673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"non-infectious diarrheal disease","secondary_identifiers":["MEDGEN:540680","UMLS:C0267436","SCTID:69980003"],"synonyms":[{"name":"non-infective diarrhea","type":"exact"},{"name":"non-infective diarrhoea","type":"exact"},{"name":"presumed non-infectious diarrhea","type":"related"},{"name":"presumed non-infectious diarrhoea","type":"related"}],"termid":"MONDO:0045030","xrefs":{"Monarch":{"xref_id":"0045030"}}}


id: MONDO:0016003
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An disease or disorder caused by infection with Ehrlichia.","definition_xrefs":["MONDO:patterns/specific_infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary bacterial infectious disease","termid":"MONDO:0000314"},{"relation_name":"is_a","term_name":"Anaplasmataceae infectious disease","termid":"MONDO:0006922"},{"relation_name":"is_a","term_name":"tick-borne infectious disease","termid":"MONDO:0025294"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ehrlichiosis","secondary_identifiers":["UMLS:C0085399","ICD9:082.4","MESH:D016873","DOID:10242","ICD9:082.40","Orphanet:1902","icd11.foundation:1116297863","GARD:2092","MEDGEN:39039","SCTID:240626005"],"synonyms":[{"name":"human ehrlichiosis","type":"exact"}],"termid":"MONDO:0016003","xrefs":{"Monarch":{"xref_id":"0016003"}}}


id: PBO:0002147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AT hook protein","termid":"PBO:0002147"}


id: SO:0002111
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A processed_transcript supported by EST and/or mRNA evidence that aligns unambiguously to a pseudogene locus (i.e. alignment to the pseudogene locus clearly better than alignment to parent locus).","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"processed_transcript","termid":"SO:0001503"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogene_processed_transcript","synonyms":[{"name":"pseudogene processed transcript","type":"exact"}],"termid":"SO:0002111"}


id: GO:0047268
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: raffinose + 1-alpha-D-galactosyl-myo-inositol = stachyose + myo-inositol.","definition_xrefs":["EC:2.4.1.67","MetaCyc:2.4.1.67-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactosyltransferase activity","termid":"GO:0008378"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"galactinol-raffinose galactosyltransferase activity","secondary_identifiers":["RHEA:20776"],"synonyms":[{"name":"alpha-D-(1->3)-galactosyl-myo-inositol:raffinose galactosyltransferase activity","type":"related"},{"name":"stachyose synthetase activity","type":"related"}],"termid":"GO:0047268"}


id: PBO:0085845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; null mutation suppresses cdc13-1 temperature sensitivity","termid":"PBO:0085845"}


id: PBO:0042621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caudal type homeobox 1","termid":"PBO:0042621"}


id: PR:O60180
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- arx1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60180"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metalloprotease arx1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC23E6.05","synonyms":[{"name":"Spom972h-arx1","type":"exact"},{"name":"associated with ribosomal export complex protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60180"}


id: GO:0048520
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of behavior, the internally coordinated responses (actions or inactions) of whole living organisms (individuals or groups) to internal or external stimuli.","definition_xrefs":["GOC:pr","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of behavior","termid":"GO:0050795"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"behavior","termid":"GO:0007610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of behavior","synonyms":[{"name":"activation of behavior","type":"narrow"},{"name":"stimulation of behavior","type":"narrow"},{"name":"up regulation of behavior","type":"exact"},{"name":"up-regulation of behavior","type":"exact"},{"name":"upregulation of behavior","type":"exact"}],"termid":"GO:0048520"}


id: GO:1990969
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process in which a host organism modulates the frequency, rate or extent of the activity of a viral RNA-binding transcription factor.","definition_xrefs":["GOC:bf","GOC:PARL","PMID:25116364"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by host of viral RNA-binding transcription factor activity (obsolete GO:1990969)","synonyms":[{"name":"modulation by host of viral Tat activity","type":"narrow"}],"termid":"GO:1990969"}


id: GO:1903967
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a micafungin stimulus.","definition_xrefs":["GO_REF:0000071","GOC:TermGenie","PMID:16928959"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to lipid","termid":"GO:0033993"},{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to micafungin","termid":"GO:1903967"}


id: PBO:0054635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2040","termid":"PBO:0054635"}


id: PBO:0062412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 39 pseudogene","termid":"PBO:0062412"}


id: MONDO:0008676
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hereditary mucosal leukokeratosis in which the cause of the disease is a mutation in the KRT4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary mucosal leukokeratosis","termid":"MONDO:0015748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"white sponge nevus 1","secondary_identifiers":["OMIM:193900","UMLS:C4011926","DOID:0081287","MEDGEN:860363"],"synonyms":[{"name":"KRT4 hereditary mucosal leukokeratosis","type":"exact"},{"name":"WHITE sponge NEVUS 1","type":"related"},{"name":"WSN1","type":"related"},{"name":"White sponge Nevus of Cannon","type":"related"},{"name":"White sponge Nevus type 1","type":"exact"},{"name":"hereditary mucosal leukokeratosis caused by mutation in KRT4","type":"exact"},{"name":"leukokeratosis, hereditary mucosal","type":"related"},{"name":"white sponge nevus 1","type":"exact"}],"termid":"MONDO:0008676","xrefs":{"Monarch":{"xref_id":"0008676"}}}


id: GO:0061565
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of introducing a phosphate group into dAMP, deoxyadenosine monophosphate, to produce dADP. Addition of two phosphate groups produces dATP.","definition_xrefs":["GOC:dph","PMID:23416111"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate phosphorylation","termid":"GO:0046940"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"dAMP phosphorylation","termid":"GO:0061565"}


id: GO:0009896
data:
  {"annotated_genes":["SJAG_01625","SJAG_02723","SJAG_03851","SJAG_00854","SJAG_05322","SJAG_01131","SJAG_03048","SJAG_03699","SJAG_03179","SJAG_04990","SJAG_04824","SJAG_01696","SJAG_03883","SJAG_04682","SJAG_02213","SJAG_02808","SJAG_04153","SJAG_00686","SJAG_02540","SJAG_00642","SJAG_04249","SJAG_04084","SJAG_02036","SJAG_00759","SJAG_04350","SJAG_01716","SJAG_04496","SJAG_01436","SJAG_04006","SJAG_03597","SJAG_00343","SJAG_04477","SJAG_04825","SJAG_00824","SJAG_02239","SJAG_05694","SJAG_01489","SJAG_04407","SJAG_00071","SJAG_00766","SJAG_04118","SJAG_03157","SJAG_03876","SJAG_05000","SJAG_01944","SJAG_01521","SJAG_01184","SJAG_03113","SJAG_01818","SJAG_01191","SJAG_00966","SJAG_04321","SJAG_16457","SJAG_00704","SJAG_01053","SJAG_04818","SJAG_01210","SJAG_04502","SJAG_00391","SJAG_02383","SJAG_05289","SJAG_02370","SJAG_01544","SJAG_04880","SJAG_02765","SJAG_00712","SJAG_04435","SJAG_01910","SJAG_00169","SJAG_00285","SJAG_05346","SJAG_02622","SJAG_05010","SJAG_02433","SJAG_03745"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[120344],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061158"},{"annotations":[113989,77571,81403,76172,58789,79345],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000290"},{"annotations":[120131],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061157"},{"annotations":[93555],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0060212"},{"annotations":[107210,99154,108424,109417,117888,94127,117448,120332,106340,104013,94958,97817],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071042"},{"annotations":[78388,101852,100054,72354,117147,99967,60378,81428],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000288"},{"annotations":[94383,118611,92656,80581,79487,75443,71999,81530,94480,91658,96219,97410,117663,77253],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000289"},{"annotations":[93556],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0036450"},{"annotations":[67856,92657,119241],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990074"},{"annotations":[90812],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905786"},{"annotations":[110530,110623],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000786"},{"annotations":[99537],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901098"},{"annotations":[81707,75414,100792,111650,113825,101359,116578,75307],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010508"},{"annotations":[70570],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903599"},{"annotations":[77163,108215],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016239"},{"annotations":[108613],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120272"},{"annotations":[74495,91569,106865],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060213"},{"annotations":[70350,66674,62199,68345,68852,69836],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901800"},{"annotations":[108614,110866,104316,119083,113699],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032436"},{"annotations":[101309],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904352"},{"annotations":[91393],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140501"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of metabolic process","termid":"GO:0009893"},{"relation_name":"is_a","term_name":"regulation of catabolic process","termid":"GO:0009894"},{"relation_name":"positively_regulates","term_name":"catabolic 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regulation of catabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"activation of catabolic process","type":"narrow"},{"name":"positive regulation of breakdown","type":"exact"},{"name":"positive regulation of catabolism","type":"exact"},{"name":"positive regulation of degradation","type":"exact"},{"name":"stimulation of catabolic process","type":"narrow"},{"name":"up regulation of catabolic process","type":"exact"},{"name":"up-regulation of catabolic process","type":"exact"},{"name":"upregulation of catabolic process","type":"exact"}],"termid":"GO:0009896","terms_by_termid":{"GO:0000288":null,"GO:0000289":null,"GO:0000290":null,"GO:0010508":null,"GO:0016239":null,"GO:0032436":null,"GO:0036450":null,"GO:0060212":null,"GO:0060213":null,"GO:0061157":null,"GO:0061158":null,"GO:0071042":null,"GO:0120272":null,"GO:0140501":null,"GO:1901098":null,"GO:1901800":null,"GO:1903599":null,"GO:1904352":null,"GO:1905786":null,"GO:1990074":null,"GO:2000786":null}}


id: GO:0089703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-aspartate out of the vacuole, across the vacuolar membrane.","definition_xrefs":["PMID:21307582"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuolar transmembrane transport","termid":"GO:0034486"},{"relation_name":"is_a","term_name":"vacuolar amino acid transmembrane transport","termid":"GO:0034487"},{"relation_name":"is_a","term_name":"L-aspartate transmembrane transport","termid":"GO:0070778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"L-aspartate transmembrane export from vacuole","termid":"GO:0089703"}


id: PBO:0005391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"medial ring protein Mid1","termid":"PBO:0005391"}


id: PBO:0073272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 8","termid":"PBO:0073272"}


id: FYPO:0001531
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of GTPase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal GTPase activity","termid":"FYPO:0001530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000661","FYPO:0000654","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"decreased GTPase activity","synonyms":[{"name":"reduced GTPase activity","type":"exact"}],"termid":"FYPO:0001531"}


id: PR:O60154
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC19C7.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60154"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C19C7.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19C7.05","synonyms":[{"name":"Spom972h-SPBC19C7.05","type":"exact"}],"termid":"PR:O60154"}


id: MONDO:0005366
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chronic form of hepatitis B infection.","definition_xrefs":["MONDO:patterns/chronic"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hepatitis B virus infection","termid":"MONDO:0005344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"chronic hepatitis B virus infection","secondary_identifiers":["EFO:0004239","MESH:D019694","MEDGEN:99834","UMLS:C0524909"],"synonyms":[{"name":"chronic Hepatitis B","type":"exact"},{"name":"hepatitis B infection, chronic","type":"exact"},{"name":"hepatitis B, chronic","type":"exact"}],"termid":"MONDO:0005366","xrefs":{"Monarch":{"xref_id":"0005366"}}}


id: MONDO:0001621
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infection that is caused by certain species of Rickettsia or Borrelia, which are transmitted to humans from infected ticks; it is characterized by sudden fever, chills, headaches, myalgia, arthralgia, nausea, and possibly a rash. Symptoms usually persist for two to nine days, then disappear, with recurrence after several weeks if the patient remains untreated.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Rickettsiosis","termid":"MONDO:0006956"},{"relation_name":"is_a","term_name":"relapsing fever","termid":"MONDO:0019633"},{"relation_name":"is_a","term_name":"tick-borne infectious disease","termid":"MONDO:0025294"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tick-borne relapsing fever","secondary_identifiers":["NCIT:C34976","SCTID:10301003","DOID:13036","icd11.foundation:923521593","ICD9:087.1","ICD10CM:A68.1","MEDGEN:20515","UMLS:C0035022"],"synonyms":[{"name":"Relapsing fever, tick-borne","type":"exact"}],"termid":"MONDO:0001621","xrefs":{"Monarch":{"xref_id":"0001621"}}}


id: PBO:0012303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteiasome complex subunit beta 3, Pup3 (predicted)","termid":"PBO:0012303"}


id: PBO:0056312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase kinase 6","termid":"PBO:0056312"}


id: FYPO:0001406
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A septation phenotype observed in the vegetative growth phase of the life cycle in which a cell forms a septum that is thicker than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal septum morphology during vegetative growth","termid":"FYPO:0002023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000032","FYPO:0005447"],"is_obsolete":false,"name":"increased septum thickness","synonyms":[{"name":"increased septal material","type":"related"},{"name":"increased septum thickness during mitotic cell cycle","type":"related"},{"name":"increased septum thickness during vegetative growth","type":"exact"},{"name":"thick septum","type":"exact"}],"termid":"FYPO:0001406"}


id: FYPO:0005594
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at a replication fork pausing site within the eukaryotic rDNA repeat spacer is increased.","definition_xrefs":["PMID:25965521","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to chromatin at rDNA","termid":"FYPO:0004032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased protein localization to chromatin at rDNA replication fork barrier","synonyms":[{"name":"increased protein localisation to chromatin at rDNA replication fork barrier","type":"exact"},{"name":"increased protein localization to chromatin at rDNA replication fork barrier during mitotic cell cycle","type":"related"},{"name":"increased protein localization to chromatin at rDNA replication fork barrier during vegetative growth","type":"exact"},{"name":"increased protein localization to chromatin at ribosomal DNA replication fork barrier","type":"exact"}],"termid":"FYPO:0005594"}


id: GO:0072687
data:
  {"annotated_genes":["SJAG_04140","SJAG_01464","SJAG_00930","SJAG_02286","SJAG_04745","SJAG_00460","SJAG_01837","SJAG_02368","SJAG_01546","SJAG_03989","SJAG_03540","SJAG_04412","SJAG_03048","SJAG_03926","SJAG_01613","SJAG_03073","SJAG_02241","SJAG_01805","SJAG_05196","SJAG_03915","SJAG_03681","SJAG_02320","SJAG_04623"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[91226,104280,105208,109776,113171,115214,117899,120682],"is_not":false,"summary":null,"term":"GO:0072687"},{"annotations":[89609],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990574"},{"annotations":[118669,105470,120718,103356],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990385"},{"annotations":[93165,109051,96662,101124,101822,95744,95671,104743,120864,98674],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0090619"}]},"cv_name":"cellular_component","definition":"A spindle that forms as part of meiosis. Several proteins, such as budding yeast Spo21p, fission yeast Spo2 and Spo13, and C. elegans mei-1, localize specifically to the meiotic spindle and are absent from the mitotic spindle.","definition_xrefs":["PMID:18367542","PMID:8027178","GOC:mah","PMID:11408572","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle","termid":"GO:0005819"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00460":null,"SJAG_00930":null,"SJAG_01464":null,"SJAG_01546":null,"SJAG_01613":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_02241":null,"SJAG_02286":null,"SJAG_02320":null,"SJAG_02368":null,"SJAG_03048":null,"SJAG_03073":null,"SJAG_03540":null,"SJAG_03681":null,"SJAG_03915":null,"SJAG_03926":null,"SJAG_03989":null,"SJAG_04140":null,"SJAG_04412":null,"SJAG_04623":null,"SJAG_04745":null,"SJAG_05196":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0015630","GO:0005575"],"is_obsolete":false,"name":"meiotic spindle","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0072687","terms_by_termid":{"GO:0072687":null,"GO:0090619":null,"GO:1990385":null,"GO:1990574":null}}


id: MONDO:0008869
data:
  {"annotated_genes":["SJAG_00364"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88629],"is_not":false,"summary":null,"term":"MONDO:0008869"}]},"cv_name":"mondo","definition":"Any Seckel syndrome in which the cause of the disease is a mutation in the ATR gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Seckel syndrome","termid":"MONDO:0019342"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00364":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Seckel syndrome 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:15143","MEDGEN:1637056","UMLS:C4551474","OMIM:210600","DOID:0070007"],"synonyms":[{"name":"ATR Seckel syndrome","type":"exact"},{"name":"Bird-headed dwarfism","type":"related"},{"name":"SCKL1","type":"exact"},{"name":"Sckl","type":"related"},{"name":"Seckel syndrome 1","type":"exact"},{"name":"Seckel syndrome 3","type":"exact"},{"name":"Seckel syndrome caused by mutation in ATR","type":"exact"},{"name":"Seckel syndrome type 1","type":"exact"},{"name":"Seckel-type dwarfism","type":"related"},{"name":"microcephalic primordial dwarfism 1","type":"related"},{"name":"microcephalic primordial dwarfism I","type":"exact"},{"name":"nanocephalic dwarfism","type":"related"}],"termid":"MONDO:0008869","terms_by_termid":{"MONDO:0008869":null},"xrefs":{"Monarch":{"xref_id":"0008869"}}}


id: GO:1902877
data:
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id: MONDO:0035162
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete PIK3CA-related overgrowth syndrome (obsolete MONDO:0035162)","secondary_identifiers":["Orphanet:530313"],"synonyms":[{"name":"PIK3CA-Related Overgrowth Spectrum","type":"exact"},{"name":"PROS","type":"exact"}],"termid":"MONDO:0035162","xrefs":{"Monarch":{"xref_id":"0035162"}}}


id: PBO:0031192
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_tunicamycin","termid":"PBO:0031192"}


id: MONDO:0014905
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"encephalopathy due to mitochondrial and peroxisomal fission defect","termid":"MONDO:0054865"},{"relation_name":"is_a","term_name":"Mendelian encephalopathy","termid":"MONDO:0100198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0019053"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0019053","MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"encephalopathy due to defective mitochondrial and peroxisomal fission 2","secondary_identifiers":["UMLS:C4310726","GARD:17881","MEDGEN:934693","OMIM:617086","Orphanet:485421"],"synonyms":[{"name":"EMPF2","type":"exact"},{"name":"Leigh-like basal ganglia disease-optic atrophy-peripheral neuropathy syndrome","type":"exact"},{"name":"MFF-associated encephalopathy due to peroxisomal and mitochondrial fission defect","type":"exact"},{"name":"encephalopathy due to defective mitochondrial and peroxisomal fission 2","type":"exact"},{"name":"encephalopathy due to defective mitochondrial and peroxisomal fission type 2","type":"exact"}],"termid":"MONDO:0014905","xrefs":{"Monarch":{"xref_id":"0014905"}}}


id: GO:0030258
data:
  {"annotated_genes":["SJAG_04792","SJAG_00706"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78601],"is_not":false,"summary":null,"term":"GO:0030258"},{"annotations":[74997],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001561"}]},"cv_name":"biological_process","definition":"The covalent alteration of one or more fatty acids in a lipid, resulting in a change in the properties of the lipid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid metabolic process","termid":"GO:0006629"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00706":null,"SJAG_04792":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"lipid modification","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0030258","terms_by_termid":{"GO:0001561":null,"GO:0030258":null}}


id: GO:0006116
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A metabolic process that results in the oxidation of reduced nicotinamide adenine dinucleotide, NADH, to the oxidized form, NAD+.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete NADH oxidation (obsolete GO:0006116)","synonyms":[{"name":"NAD (reduced) dehydrogenation","type":"exact"},{"name":"NAD (reduced) oxidation","type":"exact"},{"name":"NADH dehydrogenation","type":"exact"},{"name":"reduced NAD dehydrogenation","type":"exact"},{"name":"reduced NAD oxidation","type":"exact"},{"name":"reduced nicotinamide adenine dinucleotide dehydrogenation","type":"exact"},{"name":"reduced nicotinamide adenine dinucleotide oxidation","type":"exact"}],"termid":"GO:0006116"}


id: MONDO:0013481
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Monosomy 13q14 is a rare chromosomal anomaly syndrome, resulting from a partial deletion of the long arm of chromosome 13, characterized by developmental delay, variable degrees of intellectual disability, retinoblastoma and craniofacial dysmorphism (incl. micro/dolichocephaly, high and broad forehead, prominent eyebrows, thick, anteverted ear lobes, short nose with a broad nasal bridge and bulbous tip, prominent philtrum, large mouth with thin upper lip and thick, everted lower lip). Other features reported include high birth weight, macrocephaly, pinealoma, hepatomegaly, inguinal hernia and cryptorchidism.","definition_xrefs":["Orphanet:1587"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete chromosomal anomaly with cataract (obsolete MONDO:0020226)","termid":"MONDO:0020226"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 13","termid":"MONDO:0016911"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 13q14 deletion syndrome","secondary_identifiers":["UMLS:C3151302","MEDGEN:462652","DOID:0060391","GARD:16570","NCIT:C36421","MESH:C535484","OMIM:613884"],"synonyms":[{"name":"Del(13)(q14)","type":"exact"},{"name":"chromosome 13Q deletion syndrome","type":"related"},{"name":"chromosome 13q14 deletion syndrome","type":"exact"},{"name":"chromosome 13q14 deletion syndrome, isolated cases","type":"exact"},{"name":"del(13q14)","type":"exact"},{"name":"deletion 13q14","type":"exact"},{"name":"monosomy 13q14","type":"related"},{"name":"monosomy type 13q14","type":"exact"}],"termid":"MONDO:0013481","xrefs":{"Monarch":{"xref_id":"0013481"}}}


id: GO:0051169
data:
  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directed movement of substances into, out of, or within the nucleus.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular 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id: PBO:0055185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2609","termid":"PBO:0055185"}


id: GO:0008004
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A layer of the basal lamina that contains collagen fibrils and connects the basal lamina to the underlying connective tissue.","definition_xrefs":["ISBN:0815316194"],"gene_count":0,"genotype_count":0,"name":"obsolete lamina reticularis (obsolete GO:0008004)","termid":"GO:0008004"}


id: GO:0050254
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + rhodopsin = ADP + phosphorhodopsin.","definition_xrefs":["PMID:14654303"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor kinase activity","termid":"GO:0004703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140096","GO:0016301","GO:0003824","GO:0003674","GO:0004672","GO:0016740"],"is_obsolete":false,"name":"rhodopsin kinase activity","secondary_identifiers":["RHEA:23356","MetaCyc:2.7.11.14-RXN","Reactome:R-HSA-2581474","EC:2.7.11.14"],"synonyms":[{"name":"GPCR kinase 1 activity","type":"narrow"},{"name":"cone opsin kinase activity","type":"narrow"},{"name":"opsin kinase (phosphorylating) activity","type":"related"},{"name":"opsin kinase activity","type":"related"},{"name":"rhodopsin kinase (phosphorylating) activity","type":"exact"}],"termid":"GO:0050254"}


id: PBO:0059209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial rRNA methyltransferase 1","termid":"PBO:0059209"}


id: PBO:0042584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDPF1 pseudogene 1","termid":"PBO:0042584"}


id: GO:0140146
data:
  {"annotated_genes":["SJAG_04698"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117567],"is_not":false,"summary":null,"term":"GO:0140146"}]},"cv_name":"biological_process","definition":"The directed movement of calcium cations into the vacuole across the vacuolar membrane.","definition_xrefs":["GOC:vw","PMID:8628289"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuolar transmembrane transport","termid":"GO:0034486"},{"relation_name":"is_a","term_name":"calcium ion transmembrane transport","termid":"GO:0070588"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04698":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0051179","GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"calcium ion import into vacuole","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140146","terms_by_termid":{"GO:0140146":null}}


id: CL:0002675
data:
  {"annotation_feature_type":"gene","cv_name":"cell","definition":"A S. pombe cell type determined by mat1-Pc and mat1-Pi on the mat1 locus.","definition_xrefs":["GOC:tfm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell","termid":"CL:0000000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H plus","termid":"CL:0002675"}


id: GO:0106076
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: succinyl-CoA + lysine in peptide = CoA + N-succinyl-lysine-peptide.","definition_xrefs":["PMID:29211711"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide N-succinyltransferase activity","termid":"GO:0106075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016746","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"peptide-lysine-N-succinyltransferase activity","termid":"GO:0106076"}


id: MONDO:1012772
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any arthrogryposis multiplex congenita that occurs in cattle due to a mutation in the CHRNB1 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arthrogryposis multiplex congenita, cattle","termid":"MONDO:1011474"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arthrogryposis multiplex congenita, CHRNB1-related, cattle","secondary_identifiers":["OMIA:002022-9913"],"termid":"MONDO:1012772","xrefs":{"Monarch":{"xref_id":"1012772"}}}


id: PBO:0054533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1933","termid":"PBO:0054533"}


id: GO:0010634
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of epithelial cell migration.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial cell migration","termid":"GO:0010632"},{"relation_name":"is_a","term_name":"positive regulation of cell migration","termid":"GO:0030335"},{"relation_name":"positively_regulates","term_name":"epithelial cell migration","termid":"GO:0010631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of epithelial cell migration","termid":"GO:0010634"}


id: GO:0042589
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a zymogen granule.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretory granule membrane","termid":"GO:0030667"},{"relation_name":"part_of","term_name":"zymogen granule","termid":"GO:0042588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0031410","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"zymogen granule membrane","termid":"GO:0042589"}


id: MONDO:0017214
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inborn error of vitamin B12 (cobalamin) metabolism characterized by recurrent ketoacidotic comas or transient vomiting, dehydration, hypotonia and intellectual deficit, which responds to vitamin B12. There are three types: cblA, cblB and cblD-variant 2 (cblDv2).","definition_xrefs":["Orphanet:28"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"is_a","term_name":"methylmalonic acidemia","termid":"MONDO:0002012"},{"relation_name":"is_a","term_name":"classic organic aciduria","termid":"MONDO:0019215"},{"relation_name":"is_a","term_name":"inborn disorder of cobalamin metabolism and transport","termid":"MONDO:0019220"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"vitamin B12-responsive methylmalonic acidemia","secondary_identifiers":["UMLS:C0342720","MEDGEN:575193","SCTID:69614003","GARD:12623"],"synonyms":[{"name":"adenosylcobalamin deficiency","type":"exact"},{"name":"vitamin B12-responsive methylmalonic aciduria","type":"exact"}],"termid":"MONDO:0017214","xrefs":{"Monarch":{"xref_id":"0017214"}}}


id: PBO:0058800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7706","termid":"PBO:0058800"}


id: GO:0098594
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A secretory granule that contains mucin.","definition_xrefs":["PMID:16377632"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretory granule","termid":"GO:0030141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0031410","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"mucin granule","termid":"GO:0098594"}


id: PBO:0040052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein 2/3 complex subunit 3","termid":"PBO:0040052"}


id: PBO:0076306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptogyrin 2 pseudogene 2","termid":"PBO:0076306"}


id: PBO:0083897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FG-nucleoporin component of central core of the nuclear pore complex; contributes directly to nucleocytoplasmic transport and maintenance of the nuclear pore complex (NPC) permeability barrier; found in stable complex with Nic96p and two other FG-nucleoproteins (Nsp1p and Nup57p)","termid":"PBO:0083897"}


id: GO:0090336
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of brown fat cell differentiation. Brown fat cell differentiation is the process in which a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of fat cell differentiation","termid":"GO:0045600"},{"relation_name":"is_a","term_name":"regulation of brown fat cell differentiation","termid":"GO:0090335"},{"relation_name":"positively_regulates","term_name":"brown fat cell differentiation","termid":"GO:0050873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of brown fat cell differentiation","termid":"GO:0090336"}


id: PBO:0084428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Major stress-induced structural GPI-cell wall glycoprotein; associates with translating ribosomes, possible role in mitochondrial genome maintenance; ORF contains two distinct variable minisatellites; SED1 has a paralog, SPI1, that arose from the whole genome duplication","termid":"PBO:0084428"}


id: GO:0035330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of hippo signaling.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular signal transduction","termid":"GO:1902531"},{"relation_name":"regulates","term_name":"hippo signaling","termid":"GO:0035329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of hippo signaling","synonyms":[{"name":"regulation of hippo signaling cascade","type":"related"},{"name":"regulation of hippo signaling pathway","type":"exact"},{"name":"regulation of hippo signalling cascade","type":"related"}],"termid":"GO:0035330"}


id: PR:Q10352
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1F12.10c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10352"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1F12.10c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F12.10c","synonyms":[{"name":"Spom972h-SPAC1F12.10c","type":"exact"}],"termid":"PR:Q10352"}


id: FYPO:0007389
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which spindle pole body (SPB)-led chromosome movement in mitotic interphase takes place at an abnormal angle relative to the long axis of the cell. Normally, the SPB oscillation angle remains nearly parallel to the long axis.","definition_xrefs":["PomBase:mah","PMID:18495844"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal spindle pole body-led chromosome movement during mitotic interphase","termid":"FYPO:0005348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abnormal angle of spindle pole body-led chromosome movement during mitotic interphase","synonyms":[{"name":"abnormal angle of SPB-led chromosome movement during mitotic interphase","type":"exact"},{"name":"abnormal angle of mitotic SPB oscillation during mitotic interphase","type":"exact"},{"name":"abnormal angle of mitotic spindle pole body movement during mitotic interphase","type":"exact"},{"name":"abnormal angle of mitotic spindle pole body oscillation during mitotic interphase","type":"exact"},{"name":"abnormal angle of spindle pole body-led chromosome movement during interphase of mitotic cell cycle","type":"exact"},{"name":"abnormal angle of spindle pole body-led chromosome movement during mitotic interphase during vegetative growth","type":"exact"},{"name":"increased angle of spindle pole body-led chromosome movement during mitotic interphase","type":"narrow"},{"name":"increased trajectory angle of SPB oscillation","type":"related"},{"name":"spindle pole body-led chromosome movement during mitotic interphase at abnormal angle","type":"exact"}],"termid":"FYPO:0007389"}


id: PBO:0004249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long-chain-fatty-acid-CoA ligase","termid":"PBO:0004249"}


id: PBO:0067287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 370, pseudogene","termid":"PBO:0067287"}


id: SO:0001788
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An U-box is a conserved T-rich region upstream of a retroviral polypurine tract that is involved in PPT primer creation during reverse transcription.","definition_xrefs":["PMID:11577982","PMID:10556309","PMID:9649446"],"direct_ancestors":[{"relation_name":"is_a","term_name":"conserved_region","termid":"SO:0000330"},{"relation_name":"part_of","term_name":"LTR_retrotransposon","termid":"SO:0000186"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U_box","synonyms":[{"name":"U-box","type":"exact"}],"termid":"SO:0001788"}


id: PBO:0031150
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_level_of_substance_in_cell","termid":"PBO:0031150"}


id: GO:0033772
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 3',5'-unsubstituted flavanone + 2 O2 + 2 reduced [NADPH--hemoprotein reductase] = a 3',5'-dihydroxyflavanone + 2 H+ + 2 H2O + 2 oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["RHEA:55448"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"flavonoid 3',5'-hydroxylase activity","secondary_identifiers":["EC:1.14.14.81","MetaCyc:RXN-13192"],"synonyms":[{"name":"F3',5'H","type":"related"},{"name":"F3'5'H","type":"related"},{"name":"flavanone,NADPH:oxygen oxidoreductase activity","type":"related"}],"termid":"GO:0033772"}


id: PBO:0004235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine decarboxylase complex subunit H (predicted)","termid":"PBO:0004235"}


id: PBO:0057237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 424","termid":"PBO:0057237"}


id: PBO:0110384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3121","termid":"PBO:0110384"}


id: GO:0072290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of epithelial cells within a renal tubule that contributes to metanephric nephron tubule morphogenesis.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration involved in metanephros development","termid":"GO:0035788"},{"relation_name":"is_a","term_name":"epithelial cell migration involved in nephron tubule morphogenesis","termid":"GO:0072155"},{"relation_name":"part_of","term_name":"metanephric nephron tubule morphogenesis","termid":"GO:0072282"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell migration involved in metanephric nephron tubule morphogenesis","termid":"GO:0072290"}


id: MONDO:0006757
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Impairment of the bile flow caused by an obstruction in the portion of the bile duct system located outside of the liver.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cholestasis","termid":"MONDO:0001751"},{"relation_name":"is_a","term_name":"non-neoplastic bile duct disorder","termid":"MONDO:0006322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"extrahepatic cholestasis","secondary_identifiers":["EFO:1000933","MedDRA:10008637","SCTID:8262006","MEDGEN:2241","MESH:D001651","DOID:13619","UMLS:C0005398"],"synonyms":[{"name":"cholestasis of extrahepatic bile duct","type":"exact"},{"name":"extrahepatic bile duct cholestasis","type":"exact"},{"name":"extrahepatic biliary stasis","type":"exact"},{"name":"extrahepatic cholestasis (finding)","type":"exact"},{"name":"extrahepatic obstructive biliary disease","type":"exact"}],"termid":"MONDO:0006757","xrefs":{"Monarch":{"xref_id":"0006757"}}}


id: PBO:0076706
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor 7","termid":"PBO:0076706"}


id: MONDO:1012039
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cerebellar abiotrophy, non-human animal","termid":"MONDO:1011834"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebellar abiotrophy, domestic cat","secondary_identifiers":["OMIA:000175-9685"],"termid":"MONDO:1012039","xrefs":{"Monarch":{"xref_id":"1012039"}}}


id: FYPO:0007535
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of the serine residue at position 2 within one or more copies of the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:30282034"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during vegetative growth","termid":"FYPO:0000776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during vegetative growth","synonyms":[{"name":"normal phosphorylation of RNA polymerase II C-terminal domain serine 2 residues during mitotic cell cycle","type":"related"},{"name":"normal phosphorylation of RNA polymerase II CTD serine 2 residues during vegetative growth","type":"exact"}],"termid":"FYPO:0007535"}


id: GO:0090399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which normal somatic cells reach an irreversible stage of cell cycle arrest following multiple rounds of replication; this end stage is associated with marked changes in gene expression and function. This is a natural barrier to unlimited proliferation of somatic cells, and is believed to be contolled by telomere shortening.","definition_xrefs":["PMID:17014937","PMID:23061726"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"replicative senescence","termid":"GO:0090399"}


id: GO:1905211
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of fibroblast chemotaxis.","definition_xrefs":["PMID:8760137","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell migration","termid":"GO:0030336"},{"relation_name":"is_a","term_name":"negative regulation of chemotaxis","termid":"GO:0050922"},{"relation_name":"is_a","term_name":"regulation of fibroblast chemotaxis","termid":"GO:1905210"},{"relation_name":"negatively_regulates","term_name":"fibroblast chemotaxis","termid":"GO:1990956"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of fibroblast chemotaxis","synonyms":[{"name":"down regulation of fibroblast chemotaxis","type":"exact"},{"name":"down-regulation of fibroblast chemotaxis","type":"exact"},{"name":"downregulation of fibroblast chemotaxis","type":"exact"},{"name":"inhibition of fibroblast chemotaxis","type":"narrow"}],"termid":"GO:1905211"}


id: PBO:0056278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannosidase alpha class 2A member 2","termid":"PBO:0056278"}


id: PBO:0091510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleotide exchange factor for the ER lumenal Hsp70 chaperone, Sil1","termid":"PBO:0091510"}


id: PBO:0044124
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTAGE family member 10, pseudogene","termid":"PBO:0044124"}


id: PBO:0114851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multi-pass membrane and CBS domain protein, magnesium extrusion factor","termid":"PBO:0114851"}


id: PBO:0084836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial pyrimidine nucleotide transporter; imports pyrimidine nucleoside triphosphates and exports pyrimidine nucleoside monophosphates; member of the mitochondrial carrier family","termid":"PBO:0084836"}


id: PBO:0082011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZSWIM8 antisense RNA 1","termid":"PBO:0082011"}


id: PomGeneEx:0000023
data:
  {"annotation_feature_type":"gene","cv_name":"PomGeneExProt","definition":"A gene expression qualifier that indicates that a protein is present at the same level under two or more sets of conditions or over a time course.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"constant","termid":"PomGeneEx:0000007"},{"relation_name":"is_a","term_name":"protein expression level","termid":"PomGeneEx:0000010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein level constant","synonyms":[{"name":"constant protein level","type":"exact"},{"name":"protein expression constant","type":"exact"}],"termid":"PomGeneEx:0000023"}


id: PBO:0057273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 497","termid":"PBO:0057273"}


id: PR:Q9P6L8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- srb8 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P6L8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator of RNA polymerase II transcription subunit 12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC688.08","synonyms":[{"name":"Spom972h-srb8","type":"exact"},{"name":"mediator complex subunit 12 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"suppressor of RNA polymerase B srb8 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P6L8"}


id: GO:0021778
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into an oligodendrocyte in an environment that is neutral with respect to the developmental pathway. Upon specification, the cell fate can be reversed.","definition_xrefs":["GO_REF:0000021","GOC:dgh","GOC:jid","GOC:cls","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell fate specification","termid":"GO:0021780"},{"relation_name":"part_of","term_name":"oligodendrocyte cell fate commitment","termid":"GO:0021779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oligodendrocyte cell fate specification","termid":"GO:0021778"}


id: GO:1905875
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of postsynaptic density organization.","definition_xrefs":["PMID:21887379","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of organelle organization","termid":"GO:0010639"},{"relation_name":"is_a","term_name":"regulation of postsynaptic density organization","termid":"GO:1905874"},{"relation_name":"negatively_regulates","term_name":"postsynaptic density organization","termid":"GO:0097106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of postsynaptic density organization","synonyms":[{"name":"down regulation of PSD organization","type":"exact"},{"name":"down regulation of post synaptic density organization","type":"exact"},{"name":"down regulation of post-synaptic density organization","type":"exact"},{"name":"down regulation of postsynaptic density organisation","type":"exact"},{"name":"down regulation of postsynaptic density organization","type":"exact"},{"name":"down-regulation of PSD organization","type":"exact"},{"name":"down-regulation of post synaptic density organization","type":"exact"},{"name":"down-regulation of post-synaptic density organization","type":"exact"},{"name":"down-regulation of postsynaptic density organisation","type":"exact"},{"name":"down-regulation of postsynaptic density organization","type":"exact"},{"name":"downregulation of PSD organization","type":"exact"},{"name":"downregulation of post synaptic density organization","type":"exact"},{"name":"downregulation of post-synaptic density organization","type":"exact"},{"name":"downregulation of postsynaptic density organisation","type":"exact"},{"name":"downregulation of postsynaptic density organization","type":"exact"},{"name":"inhibition of PSD organization","type":"narrow"},{"name":"inhibition of post synaptic density organization","type":"narrow"},{"name":"inhibition of post-synaptic density organization","type":"narrow"},{"name":"inhibition of postsynaptic density organisation","type":"narrow"},{"name":"inhibition of postsynaptic density organization","type":"narrow"},{"name":"negative regulation of PSD organization","type":"exact"},{"name":"negative regulation of post synaptic density organization","type":"exact"},{"name":"negative regulation of post-synaptic density organization","type":"exact"},{"name":"negative regulation of postsynaptic density organisation","type":"exact"}],"termid":"GO:1905875"}


id: PBO:0017577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NMS complex subunit Sos7","termid":"PBO:0017577"}


id: GO:0141063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The establishment of epigenetic modifications (imprints) in a plant central cell, leading to an asymmetry between the two maternal alleles and the paternal allele, and differential expression of the corresponding alleles in the developing endosperm. This can happen through heterochromatin formation or differential chromatin loop formation.","definition_xrefs":["PMID:28118754"],"direct_ancestors":[{"relation_name":"is_a","term_name":"genomic imprinting","termid":"GO:0071514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0006325","GO:0008150"],"is_obsolete":false,"name":"epigenetic programming in the central cell","termid":"GO:0141063"}


id: PBO:0048145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FXYD domain containing ion transport regulator 6 pseudogene 1","termid":"PBO:0048145"}


id: GO:0042993
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription factor import into nucleus (obsolete GO:0042993)","synonyms":[{"name":"activation of transcription factor import into nucleus","type":"narrow"},{"name":"positive regulation of transcription factor import into cell nucleus","type":"exact"},{"name":"positive regulation of transcription factor transport from cytoplasm to nucleus","type":"exact"},{"name":"positive regulation of transcription factor-nucleus import","type":"exact"},{"name":"stimulation of transcription factor import into nucleus","type":"narrow"},{"name":"up regulation of transcription factor import into nucleus","type":"exact"},{"name":"up-regulation of transcription factor import into nucleus","type":"exact"},{"name":"upregulation of transcription factor import into nucleus","type":"exact"}],"termid":"GO:0042993"}


id: GO:0017131
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a U-rich sequence in the 3'-end of nuclear-transcribed mRNAs; required for cytoplasmic polyadenylylation.","definition_xrefs":["GOC:krc","PMID:7954828"],"direct_ancestors":[{"relation_name":"is_a","term_name":"poly-pyrimidine tract binding","termid":"GO:0008187"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003723"],"is_obsolete":false,"name":"uridine-rich cytoplasmic polyadenylylation element binding","synonyms":[{"name":"U-rich CPE binding","type":"exact"},{"name":"uridine-rich cytoplasmic polyadenylation element binding","type":"exact"}],"termid":"GO:0017131"}


id: GO:0042551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for a neuron to attain its fully functional state.","definition_xrefs":["GOC:dph","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell maturation","termid":"GO:0048469"},{"relation_name":"part_of","term_name":"neuron development","termid":"GO:0048666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuron maturation","termid":"GO:0042551"}


id: GO:1905841
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxidopamine stimulus.","definition_xrefs":["GO_REF:0000071","GOC:rz","GOC:TermGenie","PMID:23721876"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to catecholamine","termid":"GO:0071869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to oxidopamine","termid":"GO:1905841"}


id: PBO:0091080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane organization protein, HVA22/TB2/DP1 family protein","termid":"PBO:0091080"}


id: GO:0097328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carboplatin stimulus.","definition_xrefs":["GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to carboplatin","termid":"GO:0097328"}


id: PR:Q9UTI2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- grx2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTI2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutaredoxin-2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC15E1.09","synonyms":[{"name":"Spom972h-grx2","type":"exact"}],"termid":"PR:Q9UTI2"}


id: PBO:0006769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5S rRNA (predicted)","termid":"PBO:0006769"}


id: PBO:0048717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GLRX5 pseudogene 3","termid":"PBO:0048717"}


id: GO:0050175
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-phenylalanine + H2O + NAD+ = phenylpyruvate + NH3 + NADH.","definition_xrefs":["EC:1.4.1.20","MetaCyc:PHENYLALANINE-DEHYDROGENASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor","termid":"GO:0016639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"phenylalanine dehydrogenase activity","secondary_identifiers":["RHEA:21408"],"synonyms":[{"name":"L-phenylalanine dehydrogenase activity","type":"related"},{"name":"L-phenylalanine:NAD+ oxidoreductase (deaminating)","type":"related"},{"name":"PHD","type":"related"},{"name":"PheDH activity","type":"related"}],"termid":"GO:0050175"}


id: FYPO:0005188
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of cell cycle arrest in response to hydroxyurea exposure begins later than normal. Normally, cell cycle progression is slowed or arrested transiently following exposure to hydroxyurea.","definition_xrefs":["PomBase:mah","PMID:19546237"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cell cycle arrest in mitotic G1 phase in response to nitrogen starvation","termid":"FYPO:0000711"},{"relation_name":"is_a","term_name":"abnormal cellular response to starvation during vegetative growth","termid":"FYPO:0001339"},{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle regulation during cellular response to hydroxyurea","termid":"FYPO:0001933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000631","FYPO:0001320","FYPO:0000298","FYPO:0000002"],"is_obsolete":false,"name":"delayed onset of mitotic cell cycle arrest during cellular response to hydroxyurea","synonyms":[{"name":"delayed cell cycle arrest during cellular response to hydroxyurea","type":"exact"},{"name":"delayed cell cycle arrest in response to hydroxyurea","type":"exact"},{"name":"delayed onset of cell cycle arrest during cellular response to hydroxyurea during vegetative growth","type":"exact"},{"name":"delayed onset of mitotic cell cycle arrest during cellular response to HU","type":"exact"}],"termid":"FYPO:0005188"}


id: GO:0160261
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: histone H1 L-asparagine + H2O = histone H1 L-aspartate + NH4+.","definition_xrefs":["PMID:40240600"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein asparagine deamidase activity","termid":"GO:0160260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0140096","GO:0016810"],"is_obsolete":false,"name":"histone H1 asparagine deamidase activity","termid":"GO:0160261"}


id: MONDO:0028618
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete gastroenteric neuroendocrine neoplasm (obsolete MONDO:0028618)","secondary_identifiers":["Orphanet:481508"],"termid":"MONDO:0028618","xrefs":{"Monarch":{"xref_id":"0028618"}}}


id: MONDO:0014360
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any early infantile epileptic encephalopathy in which the cause of the disease is a mutation in the NECAP1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"undetermined early-onset epileptic encephalopathy","termid":"MONDO:0018614"},{"relation_name":"is_a","term_name":"neonatal-onset developmental and epileptic encephalopathy","termid":"MONDO:0100455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0005027"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0700092","MONDO:0005027","MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy, 21","secondary_identifiers":["MEDGEN:862867","UMLS:C4014430","GARD:16017","DOID:0080443","OMIM:615833"],"synonyms":[{"name":"DEE21","type":"exact"},{"name":"EIEE21","type":"exact"},{"name":"NECAP1 early infantile epileptic encephalopathy","type":"exact"},{"name":"developmental and epileptic encephalopathy 21","type":"exact"},{"name":"early infantile epileptic encephalopathy caused by mutation in NECAP1","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 21","type":"exact"},{"name":"epileptic encephalopathy, early infantile, type 21","type":"exact"}],"termid":"MONDO:0014360","xrefs":{"Monarch":{"xref_id":"0014360"}}}


id: PBO:0060619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NCF4 antisense RNA 1","termid":"PBO:0060619"}


id: GO:0034430
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The single layer of phopholipids surrounding a lipid storage body.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle-enclosing lipid monolayer","termid":"GO:0034646"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"},{"relation_name":"part_of","term_name":"monolayer-surrounded lipid storage body","termid":"GO:0012511"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"monolayer-surrounded lipid storage body outer lipid monolayer","synonyms":[{"name":"lipid droplet outer lipid monolayer","type":"related"},{"name":"lipid storage body surface lipid monolayer","type":"exact"},{"name":"oil body outer lipid monolayer","type":"exact"},{"name":"oleosome outer lipid monolayer","type":"exact"},{"name":"spherosome outer lipid monolayer","type":"exact"}],"termid":"GO:0034430"}


id: PBO:0061396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"natriuretic peptide A","termid":"PBO:0061396"}


id: GO:0042732
data:
  {"annotated_genes":["SJAG_04660","SJAG_03958","SJAG_02010","SJAG_04276"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[66986],"is_not":false,"summary":null,"term":"GO:0042732"},{"annotations":[103110,97653,96920],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042843"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving D-xylose, a naturally occurring plant polysaccharide.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentose metabolic process","termid":"GO:0019321"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02010":null,"SJAG_03958":null,"SJAG_04276":null,"SJAG_04660":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"D-xylose metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"D-xylose metabolism","type":"exact"}],"termid":"GO:0042732","terms_by_termid":{"GO:0042732":null,"GO:0042843":null}}


id: GO:0044617
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which an organism initiates, promotes, or enhances the relaxation of smooth muscle in another organism via the action of a venom.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"venom-mediated perturbation of muscle system process","termid":"GO:0140137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"venom-mediated smooth muscle relaxation","synonyms":[{"name":"modulation of relaxation of smooth muscle in another organism","type":"related"},{"name":"modulation of relaxation of smooth muscle in other organism","type":"exact"},{"name":"regulation of relaxation of smooth muscle in other organism","type":"exact"}],"termid":"GO:0044617"}


id: PBO:0086222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that forms a complex with the Sit4p protein phosphatase; required for Sit4p function; member of a family of similar proteins including Sap4p, Sap155p, and Sap190p; SAP185 has a paralog, SAP190, that arose from the whole genome duplication","termid":"PBO:0086222"}


id: PBO:0082653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of small ribosomal subunit (SSU) processosome; this complex contains U3 snoRNA; required at post-transcriptional step for efficient retrotransposition; absence results in decreased Ty1 Gag:GFP protein levels; originally isolated as bud-site selection mutant that displays a random budding pattern","termid":"PBO:0082653"}


id: PBO:0031733
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_frequency_of_meiosis","termid":"PBO:0031733"}


id: PBO:0089813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-H","termid":"PBO:0089813"}


id: GO:0039595
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a virus increases the frequency, rate or extent of the breakdown of host messenger RNA (mRNA).","definition_xrefs":["PMID:17360652","PMID:16477041","PMID:22696660","PMID:12163576"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host gene expression","termid":"GO:0039656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated degradation of host mRNA","secondary_identifiers":["VZ:901"],"synonyms":[{"name":"induction by virus of catabolism of host mRNA","type":"exact"},{"name":"induction by virus of host mRNA catabolic process","type":"exact"},{"name":"induction of host mRNA decay","type":"exact"},{"name":"promotion of host mRNA degradation","type":"exact"},{"name":"viral induction of host mRNA decay","type":"exact"},{"name":"virus-mediated mRNA decay","type":"exact"}],"termid":"GO:0039595"}


id: GO:1902779
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkane stimulus.","definition_xrefs":["GOC:mengo_curators","PMID:22958739","GO_REF:0000071","PMID:23826995","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"},{"relation_name":"is_a","term_name":"response to alkane","termid":"GO:1902778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to alkane","termid":"GO:1902779"}


id: MONDO:0800304
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"neuropathy, hereditary sensory and autonomic, type IId","secondary_identifiers":["MEDGEN:860491","UMLS:C4012054"],"synonyms":[{"name":"HSAN2D","type":"exact"}],"termid":"MONDO:0800304","xrefs":{"Monarch":{"xref_id":"0800304"}}}


id: PBO:0060279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin heavy chain 13","termid":"PBO:0060279"}


id: MONDO:0859211
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with hyperkinetic movements and dyskinesia","secondary_identifiers":["MEDGEN:1794248","OMIM:619651","UMLS:C5562038"],"termid":"MONDO:0859211","xrefs":{"Monarch":{"xref_id":"0859211"}}}


id: MONDO:0019173
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Rabies is a viral zoonosis leading to a fatal encephalopathy if not treated.","definition_xrefs":["Orphanet:770"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral infectious disease","termid":"MONDO:0005108"},{"relation_name":"is_a","term_name":"infectious disorder of the nervous system","termid":"MONDO:0020010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rabies","secondary_identifiers":["NORD:1644","MedDRA:10037742","SCTID:14168008","UMLS:C0034494","DOID:11260","GARD:7516","icd11.foundation:854762584","MEDGEN:48308","MESH:D011818","ICD9:071","NCIT:C28182","ICD10CM:A82"],"synonyms":[{"name":"lyssa","type":"exact"}],"termid":"MONDO:0019173","xrefs":{"Monarch":{"xref_id":"0019173"}}}


id: MONDO:0018304
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, underdiagnosed disorder in adults characterized by recurrent febrile rash, bone and/or joint pain, enlarged lymph nodes, fatigue, a monoclonal IgM component, leukocytosis and systemic inflammatory response.","definition_xrefs":["Orphanet:37748"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"type IV hypersensitivity disease","termid":"MONDO:0002459"},{"relation_name":"excluded_subClassOf","term_name":"urticaria","termid":"MONDO:0005492"},{"relation_name":"excluded_subClassOf","term_name":"unexplained periodic fever syndrome","termid":"MONDO:0015158"},{"relation_name":"is_a","term_name":"autoinflammatory syndrome","termid":"MONDO:0019751"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schnitzler syndrome","secondary_identifiers":["MEDGEN:141892","UMLS:C0524988","DOID:4371","MESH:D019873","EFO:1001165","NORD:1696","icd11.foundation:1867840545","ICD9:708.8","SCTID:402415001","GARD:12390","MedDRA:10062908"],"synonyms":[{"name":"chronic urticaria with gammapathy","type":"related"},{"name":"chronic urticaria with gammopathy","type":"exact"},{"name":"chronic urticaria with macroglobulinemia","type":"exact"}],"termid":"MONDO:0018304","xrefs":{"Monarch":{"xref_id":"0018304"}}}


id: PBO:0083765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential membrane protein localized at nuclear envelope and SPBs; required for insertion of the newly duplicated spindle pole body into the nuclear envelope; potentially phosphorylated by Cdc28p; MPS2 has a paralog, CSM4, that arose from the whole genome duplication","termid":"PBO:0083765"}


id: GO:0047894
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phospho-5'-adenylyl sulfate + quercetin = adenosine 3',5'-diphosphate + H+ + quercetin 3-sulfate.","definition_xrefs":["RHEA:13453","EC:2.8.2.25"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfotransferase activity","termid":"GO:0008146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016782"}],"interesting_parent_ids":["GO:0016740","GO:0016782","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"flavonol 3-sulfotransferase activity","secondary_identifiers":["MetaCyc:FLAVONOL-3-SULFOTRANSFERASE-RXN","KEGG_REACTION:R02159"],"synonyms":[{"name":"3'-phosphoadenylyl-sulfate:quercetin 3-sulfotransferase activity","type":"exact"},{"name":"flavonol 3-sulphotransferase activity","type":"exact"}],"termid":"GO:0047894"}


id: PBO:0038419
data:
  {"annotation_feature_type":"gene","cv_name":"feature_cvtermprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_throughput_type","termid":"PBO:0038419"}


id: MONDO:0023571
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"intellectual disability","termid":"MONDO:0001071"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"cataract","termid":"MONDO:0005129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"Kozlowski Rafinski Klicharska syndrome","secondary_identifiers":["MESH:C537509","MEDGEN:419432","UMLS:C2931513"],"synonyms":[{"name":"metaphyseal and epiphyseal dysplasia with unusual facies and cataract","type":"related"}],"termid":"MONDO:0023571","xrefs":{"Monarch":{"xref_id":"0023571"}}}


id: MOD:01595
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The protein modification reporter fragment produced by an Applied Biosystems iTRAQ8plex-114 reagent derivatized residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"iTRAQ8plex-114 reporter+balance reagent acylated residue","termid":"MOD:01535"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter fragment","termid":"MOD:01593"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ8plex-114 reporter fragment","synonyms":[{"name":"4-methyl-1-methylidenepiperazin-1-ium","type":"exact"}],"termid":"MOD:01595"}


id: PBO:0055786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LON peptidase N-terminal domain and ring finger 3","termid":"PBO:0055786"}


id: MONDO:0008408
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"spinal muscular atrophy","termid":"MONDO:0001516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0000426"],"is_obsolete":false,"name":"scapuloperoneal spinal muscular atrophy, autosomal dominant","secondary_identifiers":["MEDGEN:148283","UMLS:C0751335","Orphanet:431255","OMIM:181405","SCTID:230248006","GARD:10314","ICD9:335.19","EFO:1001992","DOID:0111552"],"synonyms":[{"name":"SPSMA","type":"exact"},{"name":"amyotrophy, neurogenic scapuloperoneal, New England type","type":"related"},{"name":"neurogenic scapuloperoneal amyotrophy, New England type","type":"exact"},{"name":"scapuloperoneal neuronopathy","type":"exact"},{"name":"scapuloperoneal spinal muscular atrophy","type":"exact"}],"termid":"MONDO:0008408","xrefs":{"Monarch":{"xref_id":"0008408"}}}


id: PBO:0030088
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_leucine_nitrogen_source","termid":"PBO:0030088"}


id: PBO:0045239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member C19 pseudogene 7","termid":"PBO:0045239"}


id: GO:2000086
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mesenchymal to epithelial transition involved in mesonephros morphogenesis.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis","termid":"GO:2000084"},{"relation_name":"is_a","term_name":"positive regulation of epithelial cell differentiation involved in kidney development","termid":"GO:2000698"},{"relation_name":"positively_regulates","term_name":"mesenchymal to epithelial transition involved in mesonephros morphogenesis","termid":"GO:0061261"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mesenchymal to epithelial transition involved in mesonephros morphogenesis","synonyms":[{"name":"positive regulation of mesonephric mesenchyme to epithelial transition","type":"related"}],"termid":"GO:2000086"}


id: PBO:0070732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10a pseudogene 2","termid":"PBO:0070732"}


id: GO:0007420
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).","definition_xrefs":["GOC:tb","UBERON:0000955","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"},{"relation_name":"part_of","term_name":"central nervous system development","termid":"GO:0007417"},{"relation_name":"part_of","term_name":"head development","termid":"GO:0060322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"brain development","termid":"GO:0007420"}


id: MONDO:0000928
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A melanoma that arises from the upper or lower eyelid.","definition_xrefs":["NCIT:C4358"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cutaneous melanoma","termid":"MONDO:0005012"},{"relation_name":"is_a","term_name":"ocular melanoma","termid":"MONDO:0006325"},{"relation_name":"is_a","term_name":"eyelid cancer","termid":"MONDO:0021313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005328","MONDO:0005093"],"is_obsolete":false,"name":"eyelid melanoma","secondary_identifiers":["ICD9:172.1","MEDGEN:90937","DOID:10040","SCTID:231834005","UMLS:C0339116"],"synonyms":[{"name":"eyelid melanoma","type":"exact"},{"name":"eyelid melanoma (disease)","type":"exact"},{"name":"malignant eyelid melanoma","type":"exact"},{"name":"malignant melanoma of eyelid","type":"exact"},{"name":"malignant melanoma of the eyelid","type":"exact"},{"name":"melanoma (disease) of eyelid","type":"exact"},{"name":"melanoma of eyelid","type":"exact"},{"name":"melanoma of the eyelid","type":"exact"}],"termid":"MONDO:0000928","xrefs":{"Monarch":{"xref_id":"0000928"}}}


id: MONDO:0005196
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Presence of structurally anomalous spermatozoa in the semen; malformations include the physical bending of the sperm to produce kinks or bends","definition_xrefs":["EFO:0002625"],"gene_count":0,"genotype_count":0,"name":"obsolete teratozoospermia (obsolete MONDO:0005196)","secondary_identifiers":["SCTID:236817003"],"termid":"MONDO:0005196","xrefs":{"Monarch":{"xref_id":"0005196"}}}


id: PBO:0005264
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.1.24","termid":"PBO:0005264"}


id: PR:O74982
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cid2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74982"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caffeine-induced death protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC338.04","synonyms":[{"name":"Spom972h-cid2","type":"exact"}],"termid":"PR:O74982"}


id: GO:0036292
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which interchain hydrogen bonds between two single-stranded DNA (ssDNA) are reformed to regenerate double-stranded DNA (dsDNA). ssDNA is often bound and stabilized by proteins such as replication protein A (RPA) to form ssDNA bubbles. The bubbles can be rewound by ATP-dependent motors to reform base pairs between strands and thus dsDNA.","definition_xrefs":["PMID:22759634","PMID:21078962","PMID:22705370","PMID:22704558"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA rewinding (obsolete GO:0036292)","synonyms":[{"name":"DNA annealing","type":"related"},{"name":"RPA-dependent DNA rewinding","type":"narrow"},{"name":"single-stranded DNA bubble rewinding","type":"narrow"}],"termid":"GO:0036292"}


id: PR:O43011
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histidyl-tRNA synthetase, cytoplasmic that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03718","PANTHER:PTHR11476:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histidine--tRNA ligase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2G2.12","secondary_identifiers":["UniProtKB:O43011"],"synonyms":[{"name":"HisRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-HARS","type":"exact"},{"name":"histidyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O43011"}


id: GO:0046632
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a precursor cell type acquires the specialized features of an alpha-beta T cell. An alpha-beta T cell is a T cell that expresses an alpha-beta T cell receptor complex.","definition_xrefs":["CL:0000789","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell differentiation","termid":"GO:0030217"},{"relation_name":"is_a","term_name":"alpha-beta T cell activation","termid":"GO:0046631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"alpha-beta T cell differentiation","synonyms":[{"name":"alpha-beta T cell development","type":"related"},{"name":"alpha-beta T lymphocyte differentiation","type":"exact"},{"name":"alpha-beta T-cell differentiation","type":"exact"},{"name":"alpha-beta T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0046632"}


id: PBO:0003257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrestin Aly1 related, implicated in endocytosis","termid":"PBO:0003257"}


id: PBO:0111444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial rhomboid family peptidase Rbd1","termid":"PBO:0111444"}


id: GO:0036278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a deprivation of nitrogen.","definition_xrefs":["GOC:al","PMID:21118960"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter in response to nitrogen starvation (obsolete GO:0036278)","termid":"GO:0036278"}


id: MONDO:0016646
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant optic atrophy and peripheral neuropathy (ADOAPN) is a form of autosomal dominant optic atrophy (ADOA), characterized by progressive and isolated visual loss in the first decade of life, decreased reflexes in the lower limbs and a mild cerebellar stance.","definition_xrefs":["Orphanet:250932"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial oxidative phosphorylation disorder","termid":"MONDO:0016387"},{"relation_name":"is_a","term_name":"autosomal dominant optic atrophy","termid":"MONDO:0020250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0000426","MONDO:0005066","MONDO:0004069","MONDO:0005559"],"is_obsolete":false,"name":"autosomal dominant optic atrophy and peripheral neuropathy","secondary_identifiers":["MEDGEN:895207","UMLS:C4273829","GARD:20686"],"termid":"MONDO:0016646","xrefs":{"Monarch":{"xref_id":"0016646"}}}


id: GO:0008550
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. An intrinsic activity of alpha-tubulin involved in tubulin folding, division plane formation in prokaryotic cells and others.","definition_xrefs":["MetaCyc:3.6.1.51-RXN","EC:3.6.5.6"],"gene_count":0,"genotype_count":0,"name":"obsolete tubulin GTPase activity (obsolete GO:0008550)","synonyms":[{"name":"tubulin GTPase activity","type":"exact"}],"termid":"GO:0008550"}


id: PBO:0091669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial DUF1772 family protein, multimembrane spanning anthrone oxygenase-like","termid":"PBO:0091669"}


id: PBO:0030891
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cellular_response_to_stress_during_vegetative_growth","termid":"PBO:0030891"}


id: MOD:00648
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to N,O-diacetyl-L-serine.","definition_xrefs":["RESID:AA0364#var","PubMed:489587","RESID:AA0051#var","PubMed:7309355","PubMed:16731519"],"direct_ancestors":[{"relation_name":"has_functional_parent","term_name":"N-acetyl-L-serine","termid":"MOD:00060"},{"relation_name":"has_functional_parent","term_name":"O-acetyl-L-serine","termid":"MOD:00369"},{"relation_name":"is_a","term_name":"N-acetylated residue","termid":"MOD:00408"},{"relation_name":"is_a","term_name":"O-acetylated residue","termid":"MOD:00644"},{"relation_name":"is_a","term_name":"acetylated L-serine","termid":"MOD:00647"},{"relation_name":"is_a","term_name":"O3-acylated L-serine","termid":"MOD:02003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00408"}],"interesting_parent_ids":["MOD:00408"],"is_obsolete":false,"name":"N,O-diacetylated L-serine","synonyms":[{"name":"(S)-2-acetamido-3-acetyloxypropanoic acid","type":"exact"},{"name":"N,O-diacetyl-L-serine","type":"exact"},{"name":"N,O-diacetylserine","type":"exact"},{"name":"NOAc2Ser","type":"exact"}],"termid":"MOD:00648"}


id: PBO:0030788
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_volume_spherical_vegetative_cell","termid":"PBO:0030788"}


id: GO:0006305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The addition of alkyl groups to many positions on all four bases of DNA. Alkylating agents can also modify the bases of incoming nucleotides in the course of DNA synthesis.","definition_xrefs":["ISBN:0716735970"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA alkylation (obsolete GO:0006305)","termid":"GO:0006305"}


id: PBO:0077409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 144","termid":"PBO:0077409"}


id: MONDO:0022865
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"corneal dystrophy ichthyosis microcephaly intellectual disability","termid":"MONDO:0022865","xrefs":{"Monarch":{"xref_id":"0022865"}}}


id: GO:1990671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining of the lipid bilayer membrane around a vesicle to the lipid bilayer membrane around the Golgi medial cisterna. This can involve anterograde or retrograde transport vesicles.","definition_xrefs":["PMID:24119662","PMID:16038056","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle fusion with Golgi apparatus","termid":"GO:0048280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0061024","GO:0008150","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"vesicle fusion with Golgi medial cisterna membrane","termid":"GO:1990671"}


id: PBO:0116997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 22","termid":"PBO:0116997"}


id: PBO:0048916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A8 family member K","termid":"PBO:0048916"}


id: MONDO:1011833
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebellar Purkinje cell degeneration, non-human animal","secondary_identifiers":["OMIA:000174"],"termid":"MONDO:1011833","xrefs":{"Monarch":{"xref_id":"1011833"}}}


id: PBO:0082273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AN1-type zinc finger protein, effector of proteotoxic stress response; stress-inducible transcriptional target of Rpn4p; induced by nitrogen limitation, weak acid, misfolded proteins; short-lived protein, degraded by proteasome; may protect cells from trivalent metalloid induced proteotoxicity; contains PACE promoter element; ortholog of human AIRAP, which stimulates proteasome activity in response to arsenic; protein abundance increases under DNA replication stress","termid":"PBO:0082273"}


id: PBO:0066039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAN pseudogene 8","termid":"PBO:0066039"}


id: PBO:0028939
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_growth","termid":"PBO:0028939"}


id: PBO:0000538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lon protease homolog Lon1 (predicted)","termid":"PBO:0000538"}


id: PBO:0058409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4778","termid":"PBO:0058409"}


id: SO:0001964
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A modified guanine DNA base feature.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_DNA_base","termid":"SO:0000305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified_guanine","termid":"SO:0001964"}


id: PBO:0031210
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-snowman-shaped_spore","termid":"PBO:0031210"}


id: GO:0060239
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of signal transduction involved in conjugation with cellular fusion.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"positive regulation of conjugation with cellular fusion","termid":"GO:0031139"},{"relation_name":"is_a","term_name":"regulation of signal transduction involved in conjugation with cellular fusion","termid":"GO:0060238"},{"relation_name":"positively_regulates","term_name":"signal transduction involved in positive regulation of conjugation with cellular fusion","termid":"GO:0032005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0000747"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0000747"}],"interesting_parent_ids":["GO:0023052","GO:0000747","GO:0008150"],"is_obsolete":false,"name":"positive regulation of signal transduction involved in conjugation with cellular fusion","termid":"GO:0060239"}


id: FYPO:0008072
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 occurs over the same portion of the peri-centromere as normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:19394293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone H3-K9 methylation at centromere during vegetative growth","termid":"FYPO:0008070"},{"relation_name":"is_a","term_name":"normal spatial extent of histone H3-K9 methylation during vegetative growth","termid":"FYPO:0008071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal spatial extent of histone H3-K9 methylation at peri-centromere during vegetative growth","synonyms":[{"name":"normal histone H3-K9 methylation spreading at peri-centromere during vegetative growth","type":"exact"}],"termid":"FYPO:0008072"}


id: PBO:0079073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-iMet (anticodon CAT) 1-1","termid":"PBO:0079073"}


id: GO:0034044
data:
  {"annotated_genes":["SJAG_00916","SJAG_02240"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[73680,79081],"is_not":false,"summary":null,"term":"GO:0034044"}]},"cv_name":"cellular_component","definition":"A protein complex that forms a coat structure on vesicles involved in exocytosis of proteins from the trans-Golgi network to the cell surface; in Saccharomyces, the complex contains Chs5p, Chs6p, and Chs6p paralogues.","definition_xrefs":["PMID:17000877","PMID:16498409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"Golgi apparatus","termid":"GO:0005794"},{"relation_name":"part_of","term_name":"trans-Golgi network transport vesicle","termid":"GO:0030140"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00916":null,"SJAG_02240":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005794","GO:0005737","GO:0005575","GO:0032991","GO:0031410"],"is_obsolete":false,"name":"exomer complex","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0034044","terms_by_termid":{"GO:0034044":null}}


id: GO:0102160
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cyanidin 3-O-beta-D-glucoside betaine + UDP-alpha-D-glucuronate = H+ + cyanidin 3-O-beta-(2-O-beta-D-glucuronosyl)-beta-D-glucoside + UDP.","definition_xrefs":["RHEA:28258"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"cyanidin 3-O-glucoside 2-O-glucuronosyltransferase activity","secondary_identifiers":["MetaCyc:RXN-11756","EC:2.4.1.254"],"synonyms":[{"name":"cyanidin-3-O-glucoside 2-O-glucuronosyltransferase activity","type":"exact"}],"termid":"GO:0102160"}


id: PBO:0086754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; proper regulation of expression during heat stress is sphingolipid-dependent; mCherry fusion protein localizes to the vacuole; YOR186W has a paralog, YLR297W, that arose from the whole genome duplication","termid":"PBO:0086754"}


id: GO:0102317
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-(methylamino)butyric acid + O2 + H2O = gamma-aminobutyric acid + formaldehyde + hydrogen peroxide.","definition_xrefs":["GOC:pz","EC:1.5.3.19"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor","termid":"GO:0016647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"4-methylaminobutyrate oxidase (demethylating) activity","secondary_identifiers":["MetaCyc:RXN-13067","RHEA:33907"],"termid":"GO:0102317"}


id: PBO:0041759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclase associated actin cytoskeleton regulatory protein 2 pseudogene 1","termid":"PBO:0041759"}


id: MONDO:0007550
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A basal subtype of epidermolysis bullosa simplex (EBS) characterized by the presence of generalized vesicles and small blisters in grouped or arcuate configuration.","definition_xrefs":["Orphanet:79396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermolysis bullosa simplex","termid":"MONDO:0017610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"epidermolysis bullosa simplex 1A, generalized severe","secondary_identifiers":["DOID:0060735","ICD9:771.2","SCTID:254179000","MEDGEN:38194","OMIM:131760","UMLS:C0079295","GARD:2141"],"synonyms":[{"name":"Dowling-Meara type epidermolysis bullosa simplex","type":"related"},{"name":"EBS, generalised severe","type":"exact"},{"name":"EBS, generalized severe","type":"exact"},{"name":"EBS-DM","type":"related"},{"name":"EBS-gen sev","type":"exact"},{"name":"EBSDM","type":"exact"},{"name":"epidermolysis bullosa herpetiformis Dowling-Meara type","type":"exact"},{"name":"epidermolysis bullosa herpetiformis, Dowling-Meara type","type":"related"},{"name":"epidermolysis bullosa simplex 1A, generalized severe","type":"exact"},{"name":"epidermolysis bullosa simplex Dowling-Meara type","type":"exact"},{"name":"epidermolysis bullosa simplex, Dowling-Meara type","type":"related"},{"name":"epidermolysis bullosa simplex, generalised severe","type":"related"},{"name":"epidermolysis bullosa simplex, generalized severe","type":"related"},{"name":"epidermolysis bullosa simplex, herpetiformis","type":"exact"},{"name":"generalised severe epidermolysis bullosa simplex","type":"exact"},{"name":"generalized severe epidermolysis bullosa simplex","type":"exact"}],"termid":"MONDO:0007550","xrefs":{"Monarch":{"xref_id":"0007550"}}}


id: GO:0052458
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of programmed cell death in the symbiont, where programmed cell death proceeds by a non-apoptotic pathway. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of symbiont non-apoptotic programmed cell death (obsolete GO:0052458)","synonyms":[{"name":"modulation by organism of symbiont non-apoptotic programmed cell death","type":"exact"}],"termid":"GO:0052458"}


id: GO:0097365
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a calcium ion by a channel that opens in response to a mechanical stress in the form of stretching, and contributing to the regulation of action potential in a cardiac muscle cell.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF","PMID:21290758"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stretch-activated, monoatomic cation-selective, calcium channel activity involved in regulation of action potential","termid":"GO:0097364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"stretch-activated, monoatomic cation-selective, calcium channel activity involved in regulation of cardiac muscle cell action potential","synonyms":[{"name":"stretch-activated, cation-selective, calcium channel activity involved in regulation of cardiac muscle cell action potential","type":"broad"}],"termid":"GO:0097365"}


id: PBO:0040051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein 2/3 complex subunit 2","termid":"PBO:0040051"}


id: PBO:0071791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease P/MRP subunit p30","termid":"PBO:0071791"}


id: GO:0071359
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded RNA stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to dsRNA","termid":"GO:0043331"},{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to dsRNA","synonyms":[{"name":"cellular response to double-stranded RNA","type":"exact"}],"termid":"GO:0071359"}


id: GO:0009629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to abiotic stimulus","termid":"GO:0009628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to gravity","synonyms":[{"name":"response to gravitational stimulus","type":"exact"}],"termid":"GO:0009629"}


id: GO:0110139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of imaginal disc-derived leg joint morphogenesis.","definition_xrefs":["PMID:25329825","GOC:ha"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of imaginal disc-derived leg joint morphogenesis","termid":"GO:0110137"},{"relation_name":"negatively_regulates","term_name":"imaginal disc-derived leg morphogenesis","termid":"GO:0007480"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of imaginal disc-derived leg joint morphogenesis","termid":"GO:0110139"}


id: MONDO:0018637
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare autosomal recessive disease characterized by the buildup in the blood of fat particles called chylomicrons (chylomicronemia), severe hypertriglyceridemia, and the risk of recurrent and potentially fatal pancreatitis and other complications. It is caused by mutations in the gene encoding LPL or, less frequently, by mutations in genes encoding other proteins necessary for LPL function.","definition_xrefs":["PMID:22239554","PMID:25470695"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial chylomicronemia syndrome","secondary_identifiers":["GARD:6414","MEDGEN:1778100","DOID:0111417","Orphanet:444490","UMLS:C5442313"],"termid":"MONDO:0018637","xrefs":{"Monarch":{"xref_id":"0018637"}}}


id: GO:1990139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within the nuclear periphery.","definition_xrefs":["GOC:mah","PMID:23703609"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to nucleus","termid":"GO:0034504"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to nuclear periphery","termid":"GO:1990139"}


id: PBO:0016945
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae snR30","termid":"PBO:0016945"}


id: GO:0075197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly by the symbiont of a neck-like structure for the purpose of penetration into its host organism. The neck-like structure connects haustorium mother cell and haustorium. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators","Wikipedia:Haustorium"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formation of infection structure","termid":"GO:0075015"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"haustorium neck formation","synonyms":[{"name":"formation of symbiont haustorium neck for entry into host","type":"related"},{"name":"symbiont haustorium neck formation for entry into host","type":"related"}],"termid":"GO:0075197"}


id: FYPO:0006662
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed during G0 phase in which the nucleus is broken into multiple small fragments that are smaller than a normal nucleus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fragmented nucleus","termid":"FYPO:0006661"},{"relation_name":"is_a","term_name":"abnormal nuclear morphology during G0","termid":"FYPO:0006667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002403"}],"interesting_parent_ids":["FYPO:0002403","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"fragmented nucleus during G0","synonyms":[{"name":"degraded nucleus during cell quiescence","type":"related"},{"name":"fragmented nuclear DNA during G0","type":"related"},{"name":"fragmented nucleus during cell quiescence","type":"exact"},{"name":"fragmented nucleus during quiescence","type":"exact"},{"name":"loss of nuclear integrity during G0","type":"related"}],"termid":"FYPO:0006662"}


id: PBO:0058504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5694","termid":"PBO:0058504"}


id: GO:0150067
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of tubulin deacetylase activity.","definition_xrefs":["PMID:19457097","GOC:aruk","GOC:bc"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of tubulin deacetylase activity (obsolete GO:0150067)","termid":"GO:0150067"}


id: PBO:0067961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 263","termid":"PBO:0067961"}


id: PBO:0005094
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human hAGO2","termid":"PBO:0005094"}


id: GO:2000418
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of eosinophil migration.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte migration","termid":"GO:0002687"},{"relation_name":"is_a","term_name":"regulation of eosinophil migration","termid":"GO:2000416"},{"relation_name":"positively_regulates","term_name":"eosinophil migration","termid":"GO:0072677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of eosinophil migration","termid":"GO:2000418"}


id: PBO:0000061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogene","termid":"PBO:0000061"}


id: MONDO:0013710
data:
  {"annotated_genes":["SJAG_02748"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87466],"is_not":false,"summary":null,"term":"MONDO:0013710"}]},"cv_name":"mondo","definition":"Any hereditary nonpolyposis colon cancer in which the cause of the disease is a mutation in the MSH6 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"Lynch syndrome","termid":"MONDO:0005835"},{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"hereditary nonpolyposis colon cancer","termid":"MONDO:0018630"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02748":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992","MONDO:0000426"],"is_obsolete":false,"name":"Lynch syndrome 5","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C1833477","DOID:0070272","MESH:C563456","MEDGEN:318886","OMIM:614350","GARD:15792"],"synonyms":[{"name":"HNPCC5","type":"related"},{"name":"MSH6 hereditary nonpolyposis colon cancer","type":"exact"},{"name":"colorectal cancer, hereditary nonpolyposis, type 5","type":"exact"},{"name":"hereditary nonpolyposis colon cancer caused by mutation in MSH6","type":"exact"}],"termid":"MONDO:0013710","terms_by_termid":{"MONDO:0013710":null},"xrefs":{"Monarch":{"xref_id":"0013710"}}}


id: GO:0034239
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of macrophage fusion.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of syncytium formation by plasma membrane fusion","termid":"GO:0060142"},{"relation_name":"regulates","term_name":"macrophage fusion","termid":"GO:0034238"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of macrophage fusion","termid":"GO:0034239"}


id: PBO:0036399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfhydryl oxidase Erv2 (predicted)","termid":"PBO:0036399"}


id: PR:Q10193
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- srp1 gene.","definition_xrefs":["UniProtKB:Q10193","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-splicing factor srp1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC11C11.08","synonyms":[{"name":"Spom972h-srp1","type":"exact"}],"termid":"PR:Q10193"}


id: MONDO:0060671
data:
  {"annotated_genes":["SJAG_02712","SJAG_03557"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89167,89168],"is_not":false,"summary":null,"term":"MONDO:0060671"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02712":null,"SJAG_03557":null},"genotype_count":0,"is_obsolete":false,"name":"epilepsy, juvenile myoclonic, susceptibility to, 10","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1647781","OMIM:617924","DOID:0111325","UMLS:C4693613"],"synonyms":[{"name":"EJM10","type":"related"},{"name":"epilepsy, juvenile myoclonic, susceptibility to, 10","type":"exact"}],"termid":"MONDO:0060671","terms_by_termid":{"MONDO:0060671":null},"xrefs":{"Monarch":{"xref_id":"0060671"}}}


id: PBO:0058140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4436b-2","termid":"PBO:0058140"}


id: GO:0051639
data:
  {"annotated_genes":["SJAG_03088"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73218],"is_not":false,"summary":null,"term":"GO:0051639"}]},"cv_name":"biological_process","definition":"The assembly of a network of actin filaments; actin filaments on different axes and with differing orientations are crosslinked together to form a mesh of filaments.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin filament organization","termid":"GO:0007015"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03088":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0030036"},{"rel_name":"part_of","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0008150","GO:0007010","GO:0030036"],"is_obsolete":false,"name":"actin filament network formation","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"actin gel biosynthesis","type":"exact"},{"name":"actin gel formation","type":"exact"}],"termid":"GO:0051639","terms_by_termid":{"GO:0051639":null}}


id: PBO:0045991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EI24 pseudogene 5","termid":"PBO:0045991"}


id: PR:Q9USU8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ngg1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9USU8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatin-remodeling complexes subunit ngg1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC28F2.10c","synonyms":[{"name":"Spom972h-ngg1","type":"exact"},{"name":"kinesin-associated protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USU8"}


id: PBO:0066002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RALGAPA1 pseudogene 1","termid":"PBO:0066002"}


id: PBO:0017728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CorA family magnesium ion transmembrane transporter","termid":"PBO:0017728"}


id: GO:0006529
data:
  {"annotated_genes":["SJAG_04549","SJAG_02832"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104092,112772],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070981"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of asparagine, 2-amino-3-carbamoylpropanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asparagine metabolic process","termid":"GO:0006528"},{"relation_name":"is_a","term_name":"aspartate family amino acid biosynthetic process","termid":"GO:0009067"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02832":null,"SJAG_04549":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"asparagine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"asparagine anabolism","type":"exact"},{"name":"asparagine biosynthesis","type":"exact"},{"name":"asparagine formation","type":"exact"},{"name":"asparagine synthesis","type":"exact"}],"termid":"GO:0006529","terms_by_termid":{"GO:0070981":null}}


id: MONDO:0020115
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Secondary polycythemia is an elevated absolute red blood cell mass caused by enhanced stimulation of red blood cell production by an otherwise normal erythroid lineage that may be congenital or acquired (congenital secondary polycythemia and acquired secondary polycythemia).","definition_xrefs":["Orphanet:98428"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete rare genetic hematologic disease (obsolete MONDO:0015549)","termid":"MONDO:0015549"},{"relation_name":"is_a","term_name":"polycythemia","termid":"MONDO:0005571"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"secondary polycythemia","secondary_identifiers":["NCIT:C27178","GARD:19467","UMLS:C1318533","MEDGEN:231144","MedDRA:10036062"],"synonyms":[{"name":"secondary erythrocytosis","type":"exact"},{"name":"secondary polycythemia","type":"exact"}],"termid":"MONDO:0020115","xrefs":{"Monarch":{"xref_id":"0020115"}}}


id: PBO:0043434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cornichon family AMPA receptor auxiliary protein 4","termid":"PBO:0043434"}


id: FYPO:0006753
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which dimethylation of lysine at position 20 of histone H4 in heterochromatin at subtelomeric regions occurs to a lower extent than normal.","definition_xrefs":["PMID:29632066","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased H4-K20 dimethylation during vegetative growth","termid":"FYPO:0005028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002494","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0002274"],"is_obsolete":false,"name":"decreased histone H4-K20 dimethylation at subtelomeric heterochromatin during vegetative growth","synonyms":[{"name":"decreased histone H4 K20 dimethylation at subtelomeric heterochromatin during vegetative growth","type":"exact"},{"name":"decreased histone H4-K20 dimethylation at subtelomeres during vegetative growth","type":"exact"},{"name":"decreased histone H4-K20 dimethylation at subtelomeric heterochromatin during mitotic cell cycle","type":"related"},{"name":"decreased histone H4-K20 dimethylation at telomeric heterochromatin during vegetative growth","type":"related"},{"name":"decreased histone H4K20me2 at subtelomeric heterochromatin during vegetative growth","type":"exact"},{"name":"decreased histone lysine H4 K20 dimethylation at subtelomeric heterochromatin during vegetative growth","type":"exact"},{"name":"reduced histone H4-K20 dimethylation at subtelomeric heterochromatin during vegetative growth","type":"exact"}],"termid":"FYPO:0006753"}


id: PBO:0053011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"late endosomal/lysosomal adaptor, MAPK and MTOR activator 1","termid":"PBO:0053011"}


id: PBO:0057666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1257","termid":"PBO:0057666"}


id: GO:0019870
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and stops, prevents, or reduces the activity of a potassium channel.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ion channel inhibitor activity","termid":"GO:0008200"},{"relation_name":"is_a","term_name":"potassium channel regulator activity","termid":"GO:0015459"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0098772","GO:0140678","GO:0003674"],"is_obsolete":false,"name":"potassium channel inhibitor activity","termid":"GO:0019870"}


id: FYPO:0008098
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the oscillations of homologous chromosomes which occurs at meiotic metaphase I is reduced.","definition_xrefs":["PMID:33529549"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal homologous chromosome segregation","termid":"FYPO:0004159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal chromosome oscillation at meiotic metaphase I","synonyms":[{"name":"aberrant chromosome oscillation at meiotic metaphase I","type":"exact"}],"termid":"FYPO:0008098"}


id: MONDO:0020506
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete ovarioleukodystrophy (obsolete MONDO:0020506)","secondary_identifiers":["Orphanet:99853"],"termid":"MONDO:0020506","xrefs":{"Monarch":{"xref_id":"0020506"}}}


id: GO:0002894
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of type II hypersensitivity.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of hypersensitivity","termid":"GO:0002885"},{"relation_name":"is_a","term_name":"positive regulation of myeloid leukocyte mediated immunity","termid":"GO:0002888"},{"relation_name":"is_a","term_name":"positive regulation of immunoglobulin mediated immune response","termid":"GO:0002891"},{"relation_name":"is_a","term_name":"regulation of type II hypersensitivity","termid":"GO:0002892"},{"relation_name":"positively_regulates","term_name":"type II hypersensitivity","termid":"GO:0002445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of type II hypersensitivity","synonyms":[{"name":"activation of type II hypersensitivity","type":"narrow"},{"name":"stimulation of type II hypersensitivity","type":"narrow"},{"name":"up regulation of type II hypersensitivity","type":"exact"},{"name":"up-regulation of type II hypersensitivity","type":"exact"},{"name":"upregulation of type II hypersensitivity","type":"exact"}],"termid":"GO:0002894"}


id: PBO:0003157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF1776 family protein","termid":"PBO:0003157"}


id: PBO:0041362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 4 open reading frame 3","termid":"PBO:0041362"}


id: PBO:0067630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 802, pseudogene","termid":"PBO:0067630"}


id: GO:0070533
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the BRCA1-BARD1 heterodimer, CtIP and Mre11/Rad50/NBS1 (M/R/N) complex, and binds to DNA at DNA damage sites. BRCA1-C binding ta damaged DNA is required for DNA damage-induced Chk1 phosphorylation and the G2/M transition checkpoint.","definition_xrefs":["PMID:15485915","PMID:16391231","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"BRCA1-C complex","termid":"GO:0070533"}


id: PBO:0016580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial iron ion transporter Mmt1 (predicted)","termid":"PBO:0016580"}


id: GO:0071781
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A subcompartment of the endoplasmic reticulum consisting of flattened, disc-shaped domains known as cisternae. These are typically found close to the nucleus and are generally more prominent in secretory cells.","definition_xrefs":["PMID:20434336","PMID:16469703","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum subcompartment","termid":"GO:0098827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005783"],"is_obsolete":false,"name":"endoplasmic reticulum cisternal network","synonyms":[{"name":"ER cisternal network","type":"exact"}],"termid":"GO:0071781"}


id: PBO:0091970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purine nucleoside transmembrane transporter","termid":"PBO:0091970"}


id: PBO:0064230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase C eta 1","termid":"PBO:0064230"}


id: PBO:0024841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-24(28) sterol reductase Erg4","termid":"PBO:0024841"}


id: MONDO:0004015
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A mature or immature teratoma that arises in the pineal region.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"malignant pineal area germ cell neoplasm","termid":"MONDO:0002073"},{"relation_name":"is_a","term_name":"central nervous system teratoma","termid":"MONDO:0002718"},{"relation_name":"is_a","term_name":"pineal body neoplasm","termid":"MONDO:0021232"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pineal region teratoma","secondary_identifiers":["DOID:6856","NCIT:C6753","UMLS:C1335419","MEDGEN:277517"],"synonyms":[{"name":"pineal area teratoma","type":"exact"},{"name":"teratoma of pineal area","type":"exact"},{"name":"teratoma of pineal region","type":"exact"},{"name":"teratoma of the pineal area","type":"exact"},{"name":"teratoma of the pineal region","type":"exact"}],"termid":"MONDO:0004015","xrefs":{"Monarch":{"xref_id":"0004015"}}}


id: PBO:0060330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin IH","termid":"PBO:0060330"}


id: PBO:0077473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 192","termid":"PBO:0077473"}


id: PBO:0054614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2019","termid":"PBO:0054614"}


id: MONDO:0041879
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An pneumonia caused by infection with Staphylococcus aureus.","definition_xrefs":["MONDO:patterns/specific_infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"staphylococcus aureus infection","termid":"MONDO:0005545"},{"relation_name":"is_a","term_name":"staphylococcal pneumonia","termid":"MONDO:0005970"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"staphylococcus aureus pneumonia","secondary_identifiers":["UMLS:C0857862","MEDGEN:167803","SCTID:441658007"],"synonyms":[{"name":"Staphylococcus aureus caused pneumonia","type":"exact"},{"name":"Staphylococcus aureus pneumonia","type":"exact"},{"name":"pneumonia caused by staphylococcus aureus","type":"related"},{"name":"pneumonia due to staphylococcus aureus","type":"exact"},{"name":"staphylococcus aureus pneumonia","type":"exact"}],"termid":"MONDO:0041879","xrefs":{"Monarch":{"xref_id":"0041879"}}}


id: GO:0034502
data:
  {"annotated_genes":["SJAG_01297","SJAG_04126","SJAG_04259","SJAG_03327","SJAG_02761","SJAG_03540","SJAG_02336"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[59942,77148,79761],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034501"},{"annotations":[120698,105836,110231,102309],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140210"}]},"cv_name":"biological_process","definition":"Any process in which a protein is transported to, or maintained at, a specific location on a chromosome.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to organelle","termid":"GO:0033365"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01297":null,"SJAG_02336":null,"SJAG_02761":null,"SJAG_03327":null,"SJAG_03540":null,"SJAG_04126":null,"SJAG_04259":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to chromosome","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"condensin localization to chromosome","type":"narrow"},{"name":"protein localisation to chromosome","type":"exact"}],"termid":"GO:0034502","terms_by_termid":{"GO:0034501":null,"GO:0140210":null}}


id: PR:Q9P3B0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1565.03 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P3B0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1565.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1565.03","synonyms":[{"name":"Spom972h-SPAC1565.03","type":"exact"}],"termid":"PR:Q9P3B0"}


id: MONDO:0006044
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hardening of the kidney due to infiltration by fibrous connective tissue (fibrosis), usually caused by renovascular diseases or chronic hypertension. Nephrosclerosis leads to renal ischemia.","definition_xrefs":["MESH:D009400"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"renal hypertension","termid":"MONDO:0001105"},{"relation_name":"is_a","term_name":"renal artery disease","termid":"MONDO:0002286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"nephrosclerosis","secondary_identifiers":["DOID:11664","SCTID:32916005","UMLS:C0027719","EFO:1000041","icd11.foundation:1878591797","ICD9:587","MEDGEN:14330"],"synonyms":[{"name":"renal sclerosis","type":"exact"}],"termid":"MONDO:0006044","xrefs":{"Monarch":{"xref_id":"0006044"}}}


id: GO:1903613
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of protein tyrosine phosphatase activity.","definition_xrefs":["PMID:11129957","GOC:TermGenie","GO_REF:0000059"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of protein tyrosine phosphatase activity (obsolete GO:1903613)","synonyms":[{"name":"regulation of PPT-phosphatase activity","type":"exact"},{"name":"regulation of PTP-phosphatase activity","type":"exact"},{"name":"regulation of PTPase activity","type":"exact"},{"name":"regulation of [phosphotyrosine]protein phosphatase activity","type":"exact"},{"name":"regulation of phosphoprotein phosphatase (phosphotyrosine) activity","type":"exact"},{"name":"regulation of phosphotyrosine histone phosphatase activity","type":"exact"},{"name":"regulation of phosphotyrosine phosphatase activity","type":"exact"},{"name":"regulation of phosphotyrosine protein phosphatase activity","type":"exact"},{"name":"regulation of phosphotyrosylprotein phosphatase activity","type":"exact"},{"name":"regulation of protein phosphotyrosine phosphatase activity","type":"exact"},{"name":"regulation of protein-tyrosine-phosphatase activity","type":"exact"},{"name":"regulation of protein-tyrosine-phosphate phosphohydrolase activity","type":"exact"},{"name":"regulation of tyrosine O-phosphate phosphatase activity","type":"exact"},{"name":"regulation of tyrosylprotein phosphatase activity","type":"exact"}],"termid":"GO:1903613"}


id: PBO:0000174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD/DEAH box helicase","termid":"PBO:0000174"}


id: MONDO:0007727
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A periodic fever syndrome, characterized by recurrent fever, arthralgia, myalgia and tender skin lesions lasting for 1 to 3 weeks, associated with skin, joint, ocular and serosal inflammation and complicated by secondary amyloidosis.","definition_xrefs":["Orphanet:32960"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"autoimmune disease","termid":"MONDO:0007179"},{"relation_name":"is_a","term_name":"immune system disorder","termid":"MONDO:0005046"},{"relation_name":"is_a","term_name":"hereditary periodic fever syndrome","termid":"MONDO:0017953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"TNF receptor 1-associated periodic fever syndrome","secondary_identifiers":["NORD:1804","GARD:8457","MESH:C536657","NANDO:2200433","NCIT:C119051","UMLS:C1275126","icd11.foundation:1869883509","DOID:0090018","MEDGEN:226899","NANDO:1200472","OMIM:142680","SCTID:403833009"],"synonyms":[{"name":"FHF","type":"exact"},{"name":"FPF","type":"related"},{"name":"Hibernian fever, familial","type":"exact"},{"name":"TNF receptor 1-associated periodic fever syndrome","type":"exact"},{"name":"TNF receptor 1-associated periodic syndrome","type":"exact"},{"name":"TNF receptor-associated periodic syndrome","type":"exact"},{"name":"TRAPS","type":"exact"},{"name":"TRAPS syndrome","type":"exact"},{"name":"Tumor Necrosis Factor Receptor-Associated Periodic Syndrome","type":"exact"},{"name":"autosomal dominant familial periodic fever","type":"broad"},{"name":"familial Hibernian fever","type":"exact"},{"name":"periodic FEVER, familial, autosomal dominant","type":"related"},{"name":"tumor necrosis factor receptor 1 associated periodic syndrome","type":"exact"},{"name":"tumor necrosis factor receptor 1-associated periodic syndrome","type":"exact"},{"name":"tumor necrosis factor receptor-associated periodic syndrome","type":"exact"},{"name":"tumour necrosis factor receptor 1 associated periodic syndrome","type":"exact"},{"name":"tumour necrosis factor receptor 1-associated periodic syndrome","type":"exact"},{"name":"tumour necrosis factor receptor-associated periodic syndrome","type":"exact"}],"termid":"MONDO:0007727","xrefs":{"Monarch":{"xref_id":"0007727"}}}


id: MONDO:0017069
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital abnormality in which the spinal cord and meninges protrude through a defect in the spinal column. The protrusion is above the skin surface.","definition_xrefs":["NCIT:C101201"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isolated spina bifida","termid":"MONDO:0019351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"spina bifida cystica","secondary_identifiers":["MEDGEN:21277","icd11.foundation:979482551","NANDO:2100215","Orphanet:268744","NANDO:1200509","NANDO:2200814","GARD:20958","MESH:D016137","UMLS:C0037917","MedDRA:10071011"],"synonyms":[{"name":"meningomyelocele","type":"exact"},{"name":"myelomeningocele","type":"narrow"},{"name":"open spina bifida","type":"related"},{"name":"spina bifida aperta","type":"related"},{"name":"spina bifida manifesta","type":"related"},{"name":"spina bifida, open","type":"related"}],"termid":"MONDO:0017069","xrefs":{"Monarch":{"xref_id":"0017069"}}}


id: PBO:0086238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that is required for vacuolar H+-ATPase (V-ATPase) function; peripheral membrane protein; not an actual component of the V-ATPase complex; functions in the assembly of the V-ATPase; localized to the yeast endoplasmic reticulum (ER)","termid":"PBO:0086238"}


id: GO:1904793
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of euchromatin binding.","definition_xrefs":["GOC:nc","GOC:TermGenie","GO_REF:0000059","PMID:22723415","GOC:BHF_telomere","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of euchromatin binding (obsolete GO:1904793)","termid":"GO:1904793"}


id: PBO:0001056
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.1.50","termid":"PBO:0001056"}


id: PBO:0067162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 215, pseudogene","termid":"PBO:0067162"}


id: GO:0002179
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A homodimeric complex which transfers a palmitoyl group onto serine, forming 3-dehydro-D-sphinganine.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"palmitoyltransferase complex","termid":"GO:0002178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"homodimeric serine palmitoyltransferase complex","termid":"GO:0002179"}


id: GO:0045051
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process of protein insertion into the endoplasmic reticulum (ER) membrane in which signal anchor sequences function as both ER signal sequences and membrane anchor sequences.","definition_xrefs":["ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein insertion into ER membrane","termid":"GO:0045048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0061024","GO:0051179"],"is_obsolete":false,"name":"protein insertion into ER membrane by internal uncleaved signal-anchor sequence","synonyms":[{"name":"internal uncleaved signal-anchor sequence mediated protein insertion into ER membrane","type":"exact"},{"name":"protein insertion into ER membrane, internal uncleaved signal-anchor sequence mediated","type":"exact"},{"name":"protein insertion into endoplasmic reticulum membrane by internal uncleaved signal-anchor sequence","type":"exact"},{"name":"protein-ER insertion by internal uncleaved signal-anchor sequence","type":"exact"},{"name":"protein-endoplasmic reticulum insertion by internal uncleaved signal-anchor sequence","type":"exact"}],"termid":"GO:0045051"}


id: GO:0000408
data:
  {"annotated_genes":["SJAG_00378","SJAG_02863","SJAG_04182","SJAG_04201","SJAG_06560"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[73131,80524,81219,100192,101373],"is_not":false,"summary":null,"term":"GO:0000408"}]},"cv_name":"cellular_component","definition":"A protein complex involved in t6A tRNA modification. For example, in Saccharomyces cerevisiae the complex contains Bud32p, Kae1p, Gon7p, Cgi121p, and Pcc1p.","definition_xrefs":["GOC:vw","PMID:23945934","GOC:elh","PMID:16564010","PMID:16874308","PMID:21183954"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00378":null,"SJAG_02863":null,"SJAG_04182":null,"SJAG_04201":null,"SJAG_06560":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"EKC/KEOPS complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"KEOPS/EKC complex","type":"exact"},{"name":"TCTC","type":"related"},{"name":"endopeptidase-like kinase chromatin-associated protein complex","type":"exact"},{"name":"kinase, putative endopeptidase and other proteins of small size protein complex","type":"exact"},{"name":"threonyl-carbamoly transferase complex","type":"related"}],"termid":"GO:0000408","terms_by_termid":{"GO:0000408":null}}


id: PBO:0048651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gap junction protein delta 2","termid":"PBO:0048651"}


id: PBO:0049382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIIC subunit 4","termid":"PBO:0049382"}


id: MONDO:0008303
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial male limited precocious puberty (FMPP) is a gonadotropin-independent familial form of male-limited precocious puberty, generally presenting between 2-5 years of age as accelerated growth, early development of secondary sexual characteristics and reduced adult height.","definition_xrefs":["Orphanet:3000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"peripheral precocious puberty","termid":"MONDO:0015791"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial male-limited precocious puberty","secondary_identifiers":["SCTID:237818003","UMLS:C0342549","MedDRA:10063654","DOID:0111545","GARD:4475","MedDRA:10063656","MEDGEN:87444","OMIM:176410"],"synonyms":[{"name":"FMPP","type":"exact"},{"name":"LHCGR peripheral precocious puberty","type":"exact"},{"name":"Leydig cell adenoma, somatic, with male-limited precocious puberty","type":"related"},{"name":"familial Testotoxicosis (subtype)","type":"related"},{"name":"familial gonadotropin-independent male-limited sexual precocity","type":"exact"},{"name":"leydig cell adenoma, somatic, with precocious puberty","type":"exact"},{"name":"male-limited precocious puberty","type":"exact"},{"name":"peripheral precocious puberty caused by mutation in LHCGR","type":"exact"},{"name":"precocious puberty, male","type":"exact"},{"name":"precocious puberty, male limited","type":"related"},{"name":"precocious puberty, male-limited","type":"related"},{"name":"pubertas praecox","type":"broad"},{"name":"sexual precocity, familial, gonadotropin-independent","type":"related"},{"name":"testotoxicosis","type":"exact"},{"name":"testotoxicosis, familial","type":"exact"}],"termid":"MONDO:0008303","xrefs":{"Monarch":{"xref_id":"0008303"}}}


id: PBO:0063710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglucomutase 5","termid":"PBO:0063710"}


id: PBO:0082431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Boron efflux transporter of the plasma membrane; binds HCO3-, I-, Br-, NO3- and Cl-; has similarity to the characterized boron efflux transporter A. thaliana BOR1","termid":"PBO:0082431"}


id: PBO:0074909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 80","termid":"PBO:0074909"}


id: PBO:0083494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YJL121C/RPE1; deletion confers sensitivity to GSAO","termid":"PBO:0083494"}


id: GO:0004470
data:
  {"annotated_genes":["SJAG_02176"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75012],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004471"}]},"cv_name":"molecular_function","definition":"Catalysis of the oxidative decarboxylation of malate with the concomitant production of pyruvate.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malate dehydrogenase activity","termid":"GO:0016615"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02176":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"malic enzyme activity","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"pyruvic-malic carboxylase activity","type":"related"}],"termid":"GO:0004470","terms_by_termid":{"GO:0004471":null}}


id: MONDO:0016589
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete progressive cerebello-cerebral atrophy (obsolete MONDO:0016589)","secondary_identifiers":["Orphanet:247198"],"synonyms":[{"name":"PCCA","type":"exact"}],"termid":"MONDO:0016589","xrefs":{"Monarch":{"xref_id":"0016589"}}}


id: MONDO:0014911
data:
  {"annotated_genes":["SJAG_03545"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89063],"is_not":false,"summary":null,"term":"MONDO:0014911"}]},"cv_name":"mondo","definition":"A rare, genetic, syndromic intellectual disability disease characterized by severe intrauterine and post-natal growth delay, moderate to severe intellectual disability, and neonatal-onset hepatopathy with fibrosis, steatosis, and/or cholestasis, occasionally leading to liver failure. Additional variable manifestations include muscular hypotonia, zinc deficiency, recurrent infections, diabetes mellitus, joint contractures, skin and joint laxity, hypervitaminosis D, and sensorineural hearing loss.","definition_xrefs":["Orphanet:541423"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03545":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"growth retardation, intellectual developmental disorder, hypotonia, and hepatopathy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:17980","UMLS:C4310720","OMIM:617093","MEDGEN:934687"],"synonyms":[{"name":"GRIDHH","type":"exact"},{"name":"Growth retardation, intellectual developmental disorder, hypotonia, and hepatopathy","type":"exact"},{"name":"growth retardation, impaired intellectual development, hypotonia, and hepatopathy","type":"exact"},{"name":"growth retardation, intellectual developmental disorder, hypotonia, and hepatopathy; GRIDHH","type":"exact"}],"termid":"MONDO:0014911","terms_by_termid":{"MONDO:0014911":null},"xrefs":{"Monarch":{"xref_id":"0014911"}}}


id: PBO:0036407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metaxin 2 Mtx2 (predicted)","termid":"PBO:0036407"}


id: PBO:0029472
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_acid_phosphatase_activity","termid":"PBO:0029472"}


id: PR:Q9Y7Y4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protoheme IX farnesyltransferase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11048:SF3","PRO:DNx","OMA:SCHPO03301"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protoheme IX farnesyltransferase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC365.02c","secondary_identifiers":["UniProtKB:Q9Y7Y4"],"synonyms":[{"name":"Spom972h-COX10","type":"exact"},{"name":"heme O synthase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9Y7Y4"}


id: GO:0048482
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the ovule are generated and organized. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"post-embryonic plant morphogenesis","termid":"GO:0090698"},{"relation_name":"is_a","term_name":"plant organ morphogenesis","termid":"GO:1905392"},{"relation_name":"part_of","term_name":"carpel morphogenesis","termid":"GO:0048445"},{"relation_name":"part_of","term_name":"plant ovule development","termid":"GO:0048481"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"plant ovule morphogenesis","termid":"GO:0048482"}


id: PBO:0001590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LAlv9 family protein, involved in post Golgi transport (predicted)","termid":"PBO:0001590"}


id: PBO:0064832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory subunit 10","termid":"PBO:0064832"}


id: PBO:0076647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T-box transcription factor 3","termid":"PBO:0076647"}


id: GO:0071139
data:
  {"annotated_genes":["SJAG_03898"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97919],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071140"}]},"cv_name":"biological_process","definition":"The cleavage and rejoining of intermediates, such as Holliday junctions, formed during DNA recombination to produce two intact molecules in which genetic material has been exchanged.","definition_xrefs":["GOC:elh","GOC:mah","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolic process","termid":"GO:0006259"},{"relation_name":"part_of","term_name":"DNA recombination","termid":"GO:0006310"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03898":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0006310","GO:0008150"],"is_obsolete":false,"name":"resolution of DNA recombination intermediates","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"resolution of recombination intermediates","type":"exact"}],"termid":"GO:0071139","terms_by_termid":{"GO:0071140":null}}


id: MONDO:0021103
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Historically, a heterogeneous group of acute and chronic diseases, including rheumatoid arthritis, systemic lupus erythematosus, progressive systemic sclerosis, dermatomyositis, etc. This classification was based on the notion that 'collagen' was equivalent to 'connective tissue', but with the present recognition of the different types of collagen and the aggregates derived from them as distinct entities, the term 'collagen diseases' now pertains exclusively to those inherited conditions in which the primary defect is at the gene level and affects collagen biosynthesis, post-translational modification, or extracellular processing directly. (From Cecil Textbook of Medicine, 19th ed, p1494)","definition_xrefs":["MESH:D003095"],"gene_count":0,"genotype_count":0,"name":"obsolete collagen diseases (obsolete MONDO:0021103)","secondary_identifiers":["DOID:854","ICD9:710.9","ICD9:710.8","SCTID:81573002"],"synonyms":[{"name":"collagen disease","type":"exact"},{"name":"collagen disorder","type":"exact"},{"name":"disease, collagen","type":"exact"},{"name":"diseases, collagen","type":"exact"}],"termid":"MONDO:0021103","xrefs":{"Monarch":{"xref_id":"0021103"}}}


id: GO:0017196
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acetylation of the N-terminal methionine of proteins to form the derivative N-acetyl-L-methionine.","definition_xrefs":["RESID:AA0049"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein amino acid acetylation","termid":"GO:0006474"},{"relation_name":"is_a","term_name":"peptidyl-methionine modification","termid":"GO:0018206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051604","GO:0010467"],"is_obsolete":false,"name":"N-terminal peptidyl-methionine acetylation","termid":"GO:0017196"}


id: PR:O94681
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC776.15c","secondary_identifiers":["UniProtKB:O94681"],"synonyms":[{"name":"2-oxoglutarate dehydrogenase complex component E2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"OGDC-E2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-sucB","type":"exact"},{"name":"dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94681"}


id: PBO:0080794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-prolyl aminopeptidase 1","termid":"PBO:0080794"}


id: GO:0006816
data:
  {"annotated_genes":["SJAG_04028","SJAG_03850","SJAG_00296","SJAG_01400","SJAG_04471","SJAG_04757","SJAG_04668","SJAG_04698","SJAG_02019","SJAG_03399","SJAG_02532","SJAG_05229","SJAG_02440","SJAG_04096","SJAG_03631","SJAG_02322","SJAG_02877","SJAG_01090","SJAG_04551"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99261],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036444"},{"annotations":[76217,68214,116436,94281],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098703"},{"annotations":[117567],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140146"},{"annotations":[80196,71272,111346,67157,96718,74180,75275,97356],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070588"},{"annotations":[93077],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061856"},{"annotations":[93095,115354],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905949"},{"annotations":[104076],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905665"},{"annotations":[110636],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061454"}]},"cv_name":"biological_process","definition":"The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal ion transport","termid":"GO:0030001"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00296":null,"SJAG_01090":null,"SJAG_01400":null,"SJAG_02019":null,"SJAG_02322":null,"SJAG_02440":null,"SJAG_02532":null,"SJAG_02877":null,"SJAG_03399":null,"SJAG_03631":null,"SJAG_03850":null,"SJAG_04028":null,"SJAG_04096":null,"SJAG_04471":null,"SJAG_04551":null,"SJAG_04668":null,"SJAG_04698":null,"SJAG_04757":null,"SJAG_05229":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"calcium ion transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"calcium transport","type":"exact"},{"name":"mitochondrial sodium/calcium ion exchange","type":"narrow"},{"name":"sodium:calcium exchange","type":"narrow"}],"termid":"GO:0006816","terms_by_termid":{"GO:0036444":null,"GO:0061454":null,"GO:0061856":null,"GO:0070588":null,"GO:0098703":null,"GO:0140146":null,"GO:1905665":null,"GO:1905949":null}}


id: MONDO:1012259
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spinal dysraphism, non-human animal","termid":"MONDO:1011671"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spinal dysraphism, dog","secondary_identifiers":["OMIA:000938-9615"],"termid":"MONDO:1012259","xrefs":{"Monarch":{"xref_id":"1012259"}}}


id: PBO:0060047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4 pseudogene 35","termid":"PBO:0060047"}


id: RO:0002107
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relation between a motor neuron and a muscle that it synapses to via a type II bouton.","direct_ancestors":[{"relation_name":"is_a","term_name":"synapsed_to","termid":"RO:0002120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synapsed_via_type_II_bouton_to","termid":"RO:0002107"}


id: MONDO:0006042
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A bacterial infection of the membranes covering the brain and the spinal cord caused by Mycobacterium tuberculosis.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tuberculous salpingitis","termid":"MONDO:0000271"},{"relation_name":"is_a","term_name":"central nervous system tuberculosis","termid":"MONDO:0005696"},{"relation_name":"is_a","term_name":"bacterial meningitis","termid":"MONDO:0006670"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meningeal tuberculosis","secondary_identifiers":["NORD:1437","EFO:1000039","Orphanet:499004","UMLS:C0041318","SCTID:58437007","GARD:7828","MEDGEN:21725","MESH:D014390","NCIT:C84888"],"synonyms":[{"name":"Meningitis, Tuberculous","type":"exact"},{"name":"TB meningitis","type":"exact"},{"name":"TBM","type":"exact"},{"name":"tubercular meningitis","type":"exact"},{"name":"tuberculous meningitis","type":"exact"}],"termid":"MONDO:0006042","xrefs":{"Monarch":{"xref_id":"0006042"}}}


id: GO:0022871
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + sorbose(out) = protein histidine + sorbose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport.","definition_xrefs":["PMID:10613875","RHEA:49296","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-N(PI)-phosphohistidine-sugar phosphotransferase activity","termid":"GO:0008982"},{"relation_name":"is_a","term_name":"D-glucose transmembrane transporter activity","termid":"GO:0055056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003824","GO:0022857","GO:0003674","GO:0005215","GO:0016740"],"is_obsolete":false,"name":"protein-N(PI)-phosphohistidine-sorbose phosphotransferase system transporter activity","secondary_identifiers":["MetaCyc:RXN-15094","EC:2.7.1.206"],"synonyms":[{"name":"sorbose PTS transporter activity","type":"exact"}],"termid":"GO:0022871"}


id: FYPO:0001549
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell differs from normal during a cellular response to hypoxia. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered protein level during vegetative growth","termid":"FYPO:0001325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"altered protein level during cellular response to hypoxia","synonyms":[{"name":"abnormal protein level during cellular response to hypoxia","type":"exact"},{"name":"altered cellular protein level during cellular response to hypoxia during vegetative growth","type":"exact"},{"name":"altered protein level during cellular response to hypoxia during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001549"}


id: MOD:00750
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an amino acid residue and the 3'- or 5'-end of DNA through a phosphodiester bond.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide or nucleic acid modified residue","termid":"MOD:00701"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxyribonucleic acid linked residue","synonyms":[{"name":"DNARes","type":"exact"}],"termid":"MOD:00750"}


id: PR:P36584
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl302 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P36584"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L3-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB8E5.06c","synonyms":[{"name":"Spom972h-rpl302","type":"exact"}],"termid":"PR:P36584"}


id: PBO:0045813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 3","termid":"PBO:0045813"}


id: PBO:0063337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proliferating cell nuclear antigen pseudogene 2","termid":"PBO:0063337"}


id: PBO:0090768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial complex III assembly protein Cbp6","termid":"PBO:0090768"}


id: PBO:0068936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 179, pseudogene","termid":"PBO:0068936"}


id: PBO:0057254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 455","termid":"PBO:0057254"}


id: PBO:0017464
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_gene_product","termid":"PBO:0017464"}


id: PATO:0000203
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000203 short term memory (obsolete PATO:0000203)","termid":"PATO:0000203"}


id: PBO:0088983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces japonicus specific protein with predicted signal peptide","termid":"PBO:0088983"}


id: PBO:0075039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-2","termid":"PBO:0075039"}


id: MONDO:0971012
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"MHC class I deficiency","termid":"MONDO:0011476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"MHC class I deficiency 3","secondary_identifiers":["MEDGEN:1858909","UMLS:C5935618","OMIM:620814"],"termid":"MONDO:0971012","xrefs":{"Monarch":{"xref_id":"0971012"}}}


id: MONDO:0014263
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 8","termid":"MONDO:0016907"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"8q24.3 microdeletion syndrome","secondary_identifiers":["UMLS:C3810023","OMIM:615583","GARD:12814","Orphanet:508488","MEDGEN:816353"],"synonyms":[{"name":"VRJS","type":"related"},{"name":"Verheij syndrome","type":"exact"},{"name":"chromosome 8Q24.3 deletion syndrome","type":"related"}],"termid":"MONDO:0014263","xrefs":{"Monarch":{"xref_id":"0014263"}}}


id: MOD:00432
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Covalent modification of, or a change resulting in an alteration of the measured molecular mass of, a peptide or protein amino acid residue with a secondary loss of a neutral trihydrogen phosphate molecular fragment.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue with a secondary neutral loss","termid":"MOD:00431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified residue with neutral loss of phosphate","synonyms":[{"name":"dPhosModRes","type":"exact"}],"termid":"MOD:00432"}


id: MOD:00074
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-phenylalanine residue to N-methyl-L-phenylalanine.","definition_xrefs":["PubMed:2577730","RESID:AA0065","PubMed:413571"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monomethylated phenylalanine","termid":"MOD:01063"},{"relation_name":"is_a","term_name":"alpha-amino monomethylated residue","termid":"MOD:01680"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N-methyl-L-phenylalanine","synonyms":[{"name":"(2S)-2-methylamino-3-phenylpropanoic acid","type":"exact"},{"name":"MOD_RES N-methylphenylalanine","type":"exact"},{"name":"Methyl","type":"related"},{"name":"Methylation","type":"related"},{"name":"N-methyl-L-phenylalanine","type":"exact"},{"name":"N-methylated L-phenylalanine","type":"exact"},{"name":"N-methylphenylalanine","type":"exact"},{"name":"NMe1Phe","type":"exact"}],"termid":"MOD:00074"}


id: MONDO:0000859
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The mildest form of spina bifida, characterized by any of several neural tube defects which may go undetected until an x-ray is performed. Treatment is symptomatic.","definition_xrefs":["NCIT:C101044"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spina bifida","termid":"MONDO:0008449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"spina bifida occulta","secondary_identifiers":["ICD9:756.17","DOID:0080073","MEDGEN:36380","Orphanet:645202","UMLS:C0080174","HP:0003298","MESH:D016136","SCTID:76916001","GARD:10787","icd11.foundation:449489594"],"synonyms":[{"name":"closed spinal dysraphism","type":"exact"},{"name":"spina bifida occulta","type":"exact"},{"name":"spina bifida occulta (disease)","type":"exact"}],"termid":"MONDO:0000859","xrefs":{"Monarch":{"xref_id":"0000859"}}}


id: GO:0097348
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a host cell endocytic vesicle.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell cytoplasmic vesicle membrane","termid":"GO:0044162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell endocytic vesicle membrane","termid":"GO:0097348"}


id: GO:0047417
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + N-carbamoyl-D-amino acid = CO2 + NH3 + D-amino acid.","definition_xrefs":["EC:3.5.1.77","MetaCyc:3.5.1.77-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016810","GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"N-carbamoyl-D-amino acid hydrolase activity","secondary_identifiers":["RHEA:11000"],"synonyms":[{"name":"N-carbamoyl-D-amino acid amidohydrolase activity","type":"related"}],"termid":"GO:0047417"}


id: PBO:0089927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Rrp9","termid":"PBO:0089927"}


id: PBO:0110071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double strand break localizing protein Dbl6, implicated in DNA repair","termid":"PBO:0110071"}


id: PBO:0074790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 11","termid":"PBO:0074790"}


id: PBO:0053946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1249","termid":"PBO:0053946"}


id: MONDO:0003854
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete tibial adamantinoma (obsolete MONDO:0003854)","termid":"MONDO:0003854","xrefs":{"Monarch":{"xref_id":"0003854"}}}


id: MONDO:0005637
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete adult-onset Still disease (obsolete MONDO:0005637)","synonyms":[{"name":"obsolete adult-onset Still's disease","type":"exact"}],"termid":"MONDO:0005637","xrefs":{"Monarch":{"xref_id":"0005637"}}}


id: PBO:0000565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbamoyl-phosphate synthase (glutamine hydrolyzing), aspartate carbamoyltransferase Ura1","termid":"PBO:0000565"}


id: PBO:0063815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHLDA1 antisense RNA 1","termid":"PBO:0063815"}


id: PBO:0028302
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_phosphorylation_during_mitosis","termid":"PBO:0028302"}


id: PBO:0035922
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K4_acetylation_during_vegetative_growth","termid":"PBO:0035922"}


id: PBO:0057392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548e","termid":"PBO:0057392"}


id: MONDO:0013225
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any congenital generalized lipodystrophy in which the cause of the disease is a mutation in the CAVIN1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"diabetes mellitus","termid":"MONDO:0005015"},{"relation_name":"excluded_subClassOf","term_name":"myopathy","termid":"MONDO:0005336"},{"relation_name":"is_a","term_name":"congenital generalized lipodystrophy","termid":"MONDO:0006536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005093"],"is_obsolete":false,"name":"congenital generalized lipodystrophy type 4","secondary_identifiers":["MEDGEN:412871","MESH:C567642","OMIM:613327","UMLS:C2750069","Orphanet:228429","DOID:0111138","GARD:10937"],"synonyms":[{"name":"BSCL4","type":"exact"},{"name":"Berardinelli-Seip congenital lipodystrophy type 4 with muscular dystrophy","type":"exact"},{"name":"Berardinelli-Seip congenital lipodystrophy, type 4, with muscular dystrophy","type":"related"},{"name":"CAVIN1 congenital generalised lipodystrophy (disease)","type":"exact"},{"name":"CAVIN1 congenital generalized lipodystrophy (disease)","type":"exact"},{"name":"CGL4","type":"exact"},{"name":"GCL4","type":"exact"},{"name":"congenital generalised lipodystrophy (disease) caused by mutation in CAVIN1","type":"exact"},{"name":"congenital generalized lipodystrophy (disease) caused by mutation in CAVIN1","type":"exact"},{"name":"generalised congenital lipodystrophy type 4","type":"exact"},{"name":"generalised congenital lipodystrophy with myopathy","type":"exact"},{"name":"generalized congenital lipodystrophy type 4","type":"exact"},{"name":"generalized congenital lipodystrophy with myopathy","type":"exact"},{"name":"lipodystrophy, Berardinelli-Seip congenital, type 4, with muscular dystrophy","type":"related"},{"name":"lipodystrophy, congenital generalized, type 4","type":"related"}],"termid":"MONDO:0013225","xrefs":{"Monarch":{"xref_id":"0013225"}}}


id: PATO:0002095
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A disposition inhering in a tumour to progress or fail to progress during it's life time.","definition_xrefs":["PATOC:GVG"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0002095 neoplasm disposition (obsolete PATO:0002095)","termid":"PATO:0002095"}


id: PBO:0058382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4754","termid":"PBO:0058382"}


id: GO:0000513
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of a actin severing protein.","definition_xrefs":["PMID:25451933"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular function activator activity","termid":"GO:0140677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140677"}],"interesting_parent_ids":["GO:0140677","GO:0003674","GO:0098772"],"is_obsolete":false,"name":"actin severing activator activity","termid":"GO:0000513"}


id: PBO:0038371
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_application_role","termid":"PBO:0038371"}


id: PBO:0084365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lipid-binding ER protein, enriched at nucleus-vacuolar junctions (NVJ); involved in nonvesicular transfer of ceramides from ER to Golgi; may be involved in sterol metabolism or signaling at the NVJ; contains a synaptotagmin-like-mitochondrial-lipid binding protein (SMP) domain; binds phosphatidylinositols and other lipids in a large-scale study; may interact with ribosomes, based on co-purification experiments","termid":"PBO:0084365"}


id: PR:Q09890
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC584.16c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09890"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C584.16c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC584.16c","synonyms":[{"name":"Spom972h-SPCC584.16c","type":"exact"}],"termid":"PR:Q09890"}


id: GO:0006660
data:
  {"annotated_genes":["SJAG_02100"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76110],"is_not":false,"summary":null,"term":"GO:0006660"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of phosphatidylserines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of L-serine.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylserine metabolic process","termid":"GO:0006658"},{"relation_name":"is_a","term_name":"modified amino acid catabolic process","termid":"GO:0042219"},{"relation_name":"is_a","term_name":"glycerophospholipid catabolic process","termid":"GO:0046475"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02100":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"phosphatidylserine catabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"phosphatidylserine breakdown","type":"exact"},{"name":"phosphatidylserine catabolism","type":"exact"},{"name":"phosphatidylserine degradation","type":"exact"}],"termid":"GO:0006660","terms_by_termid":{"GO:0006660":null}}


id: PBO:0003505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Tsr2 (predicted)","termid":"PBO:0003505"}


id: MONDO:0018086
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ulerythema ophryogenesis is characterized by inflammatory keratotic papules occurring on the face, which may be followed by scars, atrophy and alopecia. Prevalence is unknown but the disease, affecting mainly children and young adults, is rare. Erythema with mild hyperkeratosis of the hair follicles resulting in rough papules is observed on the cheeks and lateral aspects of the eyebrows. The disorder occasionally extends to the adjacent scalp, ears and forehead and rarely to the extensor surfaces of the limbs. Symptoms regress with age, although loss of the lateral aspects of the eyebrows can occur. Many cases occur sporadically; autosomal dominant inheritance has also been reported. There is no particular treatment, but patients should avoid sun exposure without UV protection.","definition_xrefs":["Orphanet:3406"],"direct_ancestors":[{"relation_name":"is_a","term_name":"keratosis pilaris atrophicans","termid":"MONDO:0018855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"ulerythema ophryogenesis","secondary_identifiers":["GARD:5395","UMLS:C5700076","MEDGEN:1813086"],"synonyms":[{"name":"keratosis pilaris affecting the follicles of the eyebrow hairs","type":"related"},{"name":"type of genodermatosis","type":"related"}],"termid":"MONDO:0018086","xrefs":{"Monarch":{"xref_id":"0018086"}}}


id: PR:O42656
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ric1 gene.","definition_xrefs":["UniProtKB:O42656","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanine nucleotide exchange factor subunit ric1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1851.04c","synonyms":[{"name":"Spom972h-ric1","type":"exact"},{"name":"protein ric1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42656"}


id: GO:0045752
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the Tl signaling pathway.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of Toll signaling pathway","termid":"GO:0008592"},{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"positively_regulates","term_name":"Toll signaling pathway","termid":"GO:0008063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of Toll signaling pathway","synonyms":[{"name":"activation of Toll signaling pathway","type":"narrow"},{"name":"positive regulation of Tl signaling pathway","type":"exact"},{"name":"positive regulation of Tl signalling pathway","type":"exact"},{"name":"stimulation of Toll signaling pathway","type":"narrow"},{"name":"up regulation of Toll signaling pathway","type":"exact"},{"name":"up-regulation of Toll signaling pathway","type":"exact"},{"name":"upregulation of Toll signaling pathway","type":"exact"}],"termid":"GO:0045752"}


id: PBO:0000852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein-S isoprenylcysteine O-methyltransferase Mam4","termid":"PBO:0000852"}


id: MONDO:0010003
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rowley-Rosenberg syndrome","secondary_identifiers":["OMIM:268500","MEDGEN:120638","MESH:C535874","UMLS:C0268426","SCTID:53783003"],"synonyms":[{"name":"Growth retardation, pulmonary hypertension, and amino aciduria","type":"related"},{"name":"Growth retardation, pulmonary hypertension, and aminoaciduria","type":"related"},{"name":"Rowley-Rosenberg syndrome","type":"exact"}],"termid":"MONDO:0010003","xrefs":{"Monarch":{"xref_id":"0010003"}}}


id: MONDO:0011638
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Neuroferritinopathy is a late-onset type of neurodegeneration with brain iron accumulation (NBIA) characterized by progressive chorea or dystonia and subtle cognitive deficits.","definition_xrefs":["Orphanet:157846"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Huntington disease-like syndrome","termid":"MONDO:0015548"},{"relation_name":"is_a","term_name":"disorder of iron metabolism and transport","termid":"MONDO:0017763"},{"relation_name":"is_a","term_name":"neurodegeneration with brain iron accumulation","termid":"MONDO:0018307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002039","MONDO:0005559"],"is_obsolete":false,"name":"neuroferritinopathy","secondary_identifiers":["DOID:0110737","UMLS:C1853578","ICD9:333.0","OMIM:606159","NANDO:1200539","MESH:C548080","NANDO:1200542","GARD:10686","MEDGEN:381211","SCTID:699299001"],"synonyms":[{"name":"NBIA3","type":"exact"},{"name":"Neuroferritinopathy; basal ganglia disease, adult-onset","type":"exact"},{"name":"adult basal ganglia disease","type":"exact"},{"name":"basal ganglia disease adult-onset","type":"related"},{"name":"basal ganglia disease, adult-onset","type":"related"},{"name":"ferritin-related neurodegeneration","type":"exact"},{"name":"hereditary ferritinopathy","type":"exact"},{"name":"neurodegeneration with brain iron accumulation 3","type":"related"},{"name":"neurodegeneration with brain iron accumulation type 3","type":"exact"},{"name":"neuroferritinopathy","type":"exact"}],"termid":"MONDO:0011638","xrefs":{"Monarch":{"xref_id":"0011638"}}}


id: GO:0090155
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of sphingolipid biosynthesis. Sphingolipid biosynthesis is the chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid).","definition_xrefs":["GOC:ascb_2009","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lipid biosynthetic process","termid":"GO:0051055"},{"relation_name":"is_a","term_name":"regulation of sphingolipid biosynthetic process","termid":"GO:0090153"},{"relation_name":"negatively_regulates","term_name":"sphingolipid biosynthetic process","termid":"GO:0030148"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0006629"],"is_obsolete":false,"name":"negative regulation of sphingolipid biosynthetic process","secondary_identifiers":["GO:0090157"],"synonyms":[{"name":"negative regulation of sphingolipid biosynthesis involved in cellular sphingolipid homeostasis","type":"related"}],"termid":"GO:0090155"}


id: PBO:0075197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide G pseudogene 9","termid":"PBO:0075197"}


id: FYPO:0001402
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell cortex is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to cell periphery","termid":"FYPO:0005572"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000257","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to cell cortex during vegetative growth","synonyms":[{"name":"normal protein localisation to cell cortex during vegetative growth","type":"exact"},{"name":"normal protein localization to cell cortex during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001402"}


id: PBO:0075149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide C pseudogene 5","termid":"PBO:0075149"}


id: MONDO:0000071
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete myopathy, myofibrillar (obsolete MONDO:0000071)","termid":"MONDO:0000071","xrefs":{"Monarch":{"xref_id":"0000071"}}}


id: MONDO:0017165
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Bile acid CoA ligase deficiency and defective amidation is an anomaly of bile acid synthesis characterized by fat malabsorption, neonatal cholestasis and growth failure.","definition_xrefs":["Orphanet:276066"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of bile acid synthesis","termid":"MONDO:0019218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"bile acid CoA ligase deficiency and defective amidation","secondary_identifiers":["UMLS:C4274079","MEDGEN:905864","GARD:21041","SCTID:717047007"],"termid":"MONDO:0017165","xrefs":{"Monarch":{"xref_id":"0017165"}}}


id: MONDO:0016145
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"qualitative or quantitative protein defects in neuromuscular diseases","termid":"MONDO:0016139"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"qualitative or quantitative defects of dysferlin","secondary_identifiers":["GARD:2003","UMLS:C2931687","Orphanet:207073","MESH:C537995","MEDGEN:419874"],"synonyms":[{"name":"dysferlinopathy","type":"exact"}],"termid":"MONDO:0016145","xrefs":{"Monarch":{"xref_id":"0016145"}}}


id: PBO:0064181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group XH, pseudogene","termid":"PBO:0064181"}


id: SO:0001175
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Base sequence at the 3' end of a tRNA. The 3'-hydroxyl group on the terminal adenosine is the attachment point for the amino acid.","definition_xrefs":["ISBN:0716719207"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA_region","termid":"SO:0001172"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCA_tail","synonyms":[{"name":"CCA sequence","type":"exact"},{"name":"CCA tail","type":"exact"}],"termid":"SO:0001175"}


id: GO:0005509
data:
  {"annotated_genes":["SJAG_01858","SJAG_00719","SJAG_04080","SJAG_00032","SJAG_03032","SJAG_04859","SJAG_01029","SJAG_00803","SJAG_01400","SJAG_04789","SJAG_00724","SJAG_03088","SJAG_00296","SJAG_00485","SJAG_03793","SJAG_04571","SJAG_04781","SJAG_00063","SJAG_03643","SJAG_01760","SJAG_04051","SJAG_01149","SJAG_02511","SJAG_04886","SJAG_03850","SJAG_04238","SJAG_02435","SJAG_03044","SJAG_01929","SJAG_03465","SJAG_04621","SJAG_02532","SJAG_02694","SJAG_00321","SJAG_03930","SJAG_04901","SJAG_02019","SJAG_00096","SJAG_00612","SJAG_00832","SJAG_02215","SJAG_04013","SJAG_04466","SJAG_01665","SJAG_01686","SJAG_00751","SJAG_00228","SJAG_03496","SJAG_02786","SJAG_01626"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[59236,59264,59486,59663,59964,60272,60427,60473,60604,60609,60862,61289,61892,62098,64830,67155,67830,68169,68872,69273,69464,70743,70898,70966,74242,75871,76728,80041,80404,80836,81063,91485,98200,103564,104792,105560,107238,108079,108435,110025,110261,110640,113014,114302,115761,119008,119537,119648,120219,120900],"is_not":false,"summary":null,"term":"GO:0005509"}]},"cv_name":"molecular_function","definition":"Binding to a calcium ion (Ca2+).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal ion binding","termid":"GO:0046872"}],"gene_count":50,"genes_by_uniquename":{"SJAG_00032":null,"SJAG_00063":null,"SJAG_00096":null,"SJAG_00228":null,"SJAG_00296":null,"SJAG_00321":null,"SJAG_00485":null,"SJAG_00612":null,"SJAG_00719":null,"SJAG_00724":null,"SJAG_00751":null,"SJAG_00803":null,"SJAG_00832":null,"SJAG_01029":null,"SJAG_01149":null,"SJAG_01400":null,"SJAG_01626":null,"SJAG_01665":null,"SJAG_01686":null,"SJAG_01760":null,"SJAG_01858":null,"SJAG_01929":null,"SJAG_02019":null,"SJAG_02215":null,"SJAG_02435":null,"SJAG_02511":null,"SJAG_02532":null,"SJAG_02694":null,"SJAG_02786":null,"SJAG_03032":null,"SJAG_03044":null,"SJAG_03088":null,"SJAG_03465":null,"SJAG_03496":null,"SJAG_03643":null,"SJAG_03793":null,"SJAG_03850":null,"SJAG_03930":null,"SJAG_04013":null,"SJAG_04051":null,"SJAG_04080":null,"SJAG_04238":null,"SJAG_04466":null,"SJAG_04571":null,"SJAG_04621":null,"SJAG_04781":null,"SJAG_04789":null,"SJAG_04859":null,"SJAG_04886":null,"SJAG_04901":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0046872"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0046872"],"is_obsolete":false,"name":"calcium ion binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"calcium ion storage activity","type":"related"}],"termid":"GO:0005509","terms_by_termid":{"GO:0005509":null}}


id: MONDO:0006811
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Reduction of cerebrospinal fluid pressure characterized clinically by headache which is maximal in an upright posture and occasionally by an abducens nerve palsy (see abducens nerve diseases), neck stiffness, hearing loss (see deafness); nausea; and other symptoms. This condition may be spontaneous or secondary to spinal puncture; neurosurgical procedures; dehydration; uremia; trauma (see also craniocerebral trauma); and other processes. Chronic hypotension may be associated with subdural hematomas (see hematoma, subdural) or hygromas. (From Semin Neurol 1996 Mar;16(1):5-10; Adams et al., Principles of Neurology, 6th ed, pp637-8)","definition_xrefs":["MESH:D019585"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intracranial hypotension","secondary_identifiers":["MEDGEN:141851","DOID:4723","SCTID:433691000124104","EFO:1000993","ICD9:349.89","MedDRA:10049977","UMLS:C0524812","icd11.foundation:363695674"],"termid":"MONDO:0006811","xrefs":{"Monarch":{"xref_id":"0006811"}}}


id: PBO:0087193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA splicing factor; required for ATP-independent portion of 2nd catalytic step of spliceosomal RNA splicing; interacts with Prp18p; contains zinc knuckle domain","termid":"PBO:0087193"}


id: PBO:0044622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"doublecortin domain containing 1","termid":"PBO:0044622"}


id: PBO:0116298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the TTT complex and regulator of telomere length; subunit of the TTT Hsp90 cochaperone complex that is involved in chromatin remodeling and telomeric chromatin regulation; telomere length regulator involved in the stability or biogenesis of PIKKs such as TORC1; detected in mitochondria and the cytoplasm in high-throughput studies; similar to S. pombe Tti1p","termid":"PBO:0116298"}


id: MONDO:0006654
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A chronic lung disorder characterized by deposition of coal dust in the lung parenchyma leading to the formation of black nodules and emphysema. It occurs in coal miners.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pneumoconiosis","termid":"MONDO:0015926"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anthracosis","secondary_identifiers":["MedDRA:10073051","UMLS:C0003165","NCIT:C34390","DOID:10327","MEDGEN:8107","EFO:1000814","ICD9:500","SCTID:29422001","MESH:D055008"],"synonyms":[{"name":"black lung","type":"exact"},{"name":"coal dust pneumoconiosis","type":"exact"},{"name":"coal miner's pneumoconiosis","type":"exact"},{"name":"coal workers' lung","type":"exact"},{"name":"coal workers' pneumoconiosis","type":"exact"},{"name":"melanoedema","type":"exact"},{"name":"pneumoconiosis from coal dust","type":"exact"}],"termid":"MONDO:0006654","xrefs":{"Monarch":{"xref_id":"0006654"}}}


id: GO:0034175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of toll-like receptor 12 signaling pathway.","definition_xrefs":["PMID:17328678","GOC:add","PMID:16551253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039531"},{"relation_name":"regulates","term_name":"toll-like receptor 12 signaling pathway","termid":"GO:0034174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of toll-like receptor 12 signaling pathway","synonyms":[{"name":"regulation of TLR12 signaling pathway","type":"exact"},{"name":"regulation of toll-like receptor 12 signalling pathway","type":"exact"}],"termid":"GO:0034175"}


id: PBO:0089458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphorelay sensor kinase Mak2","termid":"PBO:0089458"}


id: PBO:0047086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 136 member E, pseudogene","termid":"PBO:0047086"}


id: GO:0072013
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the glomus over time from its initial formation until its mature state. The glomus forms from the splanchnic intermediate mesoderm and is the vascularized filtration unit, filtering the blood before it enters the tubules. The glomus is external to the nephron and extends over more than one body segment.","definition_xrefs":["XAO:0000318","PMID:15647339","PMID:9268568","PMID:10572058","GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"pronephros development","termid":"GO:0048793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glomus development","synonyms":[{"name":"pronephric glomus development","type":"exact"}],"termid":"GO:0072013"}


id: FYPO:0008111
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which snRNA modification is abnormal. All snRNA modification may be abnormal, or one or more specific snRNA modifications may be selectively affected.","definition_xrefs":["PMID:37403782"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal RNA modification","termid":"FYPO:0000370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal snRNA modification","termid":"FYPO:0008111"}


id: PBO:0082005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger SWIM-type containing 5 pseudogene 1","termid":"PBO:0082005"}


id: MONDO:0010420
data:
  {"annotated_genes":["SJAG_03961"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88557],"is_not":false,"summary":null,"term":"MONDO:0010420"}]},"cv_name":"mondo","definition":"X-linked form of erythropoietic protoporphyria.","definition_xrefs":["MONDO:patterns/x_linked"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked disease","termid":"MONDO:0000425"},{"relation_name":"is_a","term_name":"erythropoietic protoporphyria","termid":"MONDO:0001676"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03961":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0019142"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0005066","MONDO:0002515","MONDO:0019142","MONDO:0005093"],"is_obsolete":false,"name":"X-linked erythropoietic protoporphyria","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NANDO:1200818","UMLS:C2677889","NANDO:2201269","OMIM:300752","Orphanet:443197","MESH:C567464","MEDGEN:394385","GARD:17755"],"synonyms":[{"name":"Erythrohepatic protoporphyria, X-linked","type":"related"},{"name":"X-linked dominant erythropoietic protoporphyria","type":"exact"},{"name":"X-linked dominant protoporphyria","type":"exact"},{"name":"XLDPP","type":"exact"},{"name":"XLEPP","type":"related"},{"name":"XLP","type":"related"},{"name":"XLPP","type":"exact"},{"name":"erythropoietic protoporphyria, X-linked","type":"exact"},{"name":"protoporphyria, erythropoietic, X-linked","type":"related"},{"name":"protoporphyria, erythropoietic, X-linked dominant","type":"related"}],"termid":"MONDO:0010420","terms_by_termid":{"MONDO:0010420":null},"xrefs":{"Monarch":{"xref_id":"0010420"}}}


id: GO:0048343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes committed to become a paraxial mesoderm cell.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesodermal cell fate commitment","termid":"GO:0001710"},{"relation_name":"part_of","term_name":"paraxial mesodermal cell differentiation","termid":"GO:0048342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"paraxial mesodermal cell fate commitment","termid":"GO:0048343"}


id: PBO:0051265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable (IV)-44-1 (pseudogene)","termid":"PBO:0051265"}


id: GO:0050616
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: loganin + NADPH + H+ + O2 = secologanin + NADP+ + 2 H2O.","definition_xrefs":["EC:1.14.19.62","MetaCyc:1.3.3.9-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor","termid":"GO:0016634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"secologanin synthase activity","secondary_identifiers":["RHEA:20585"],"synonyms":[{"name":"loganin:oxygen oxidoreductase (ring-cleaving)","type":"related"}],"termid":"GO:0050616"}


id: PBO:0041404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 6 open reading frame 118","termid":"PBO:0041404"}


id: MONDO:0019119
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A channelopathy that involves the muscle tissue.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuromuscular disease","termid":"MONDO:0019056"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"muscular channelopathy","secondary_identifiers":["GARD:18917","Orphanet:71864","MEDGEN:1842600","UMLS:C5681306"],"synonyms":[{"name":"channelopathy of muscle tissue","type":"exact"},{"name":"muscle tissue channelopathy","type":"exact"}],"termid":"MONDO:0019119","xrefs":{"Monarch":{"xref_id":"0019119"}}}


id: PBO:0001212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane transporter (predicted)","termid":"PBO:0001212"}


id: GO:0061988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chromosome organization process in which meiotic chromosomes in the germ cell nucleus cluster together to form a compact spherical structure called the karyosome.","definition_xrefs":["PMID:19696886"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiosis I cell cycle process","termid":"GO:0061982"},{"relation_name":"is_a","term_name":"chromosome organization involved in meiotic cell cycle","termid":"GO:0070192"},{"relation_name":"part_of","term_name":"gamete generation","termid":"GO:0007276"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"karyosome formation","termid":"GO:0061988"}


id: GO:0106188
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of hydrons linked to the hydrolysis of a nucleoside triphosphate.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activity acting on hydrons linked the hydrolysis of a nucleoside triphosphate (obsolete GO:0106188)","termid":"GO:0106188"}


id: PBO:0047912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(9)(q22.1)","termid":"PBO:0047912"}


id: PR:O94486
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cfh2 gene.","definition_xrefs":["UniProtKB:O94486","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitin synthase regulatory factor 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC417.05c","synonyms":[{"name":"Chs four homolog 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cfh2","type":"exact"}],"termid":"PR:O94486"}


id: GO:0043963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process in which a symbiont alters or subverts an adenylate cyclase-mediated signal transduction pathway in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete perturbation of host adenylate cyclase-mediated signal transduction (obsolete GO:0043963)","termid":"GO:0043963"}


id: GO:0010524
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate of the directed movement of calcium ions into the cytosol of a cell. The cytosol is that part of the cytoplasm that does not contain membranous or particulate subcellular components.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytosolic calcium ion concentration","termid":"GO:0007204"},{"relation_name":"is_a","term_name":"regulation of calcium ion transport into cytosol","termid":"GO:0010522"},{"relation_name":"is_a","term_name":"positive regulation of calcium ion transmembrane transport","termid":"GO:1904427"},{"relation_name":"positively_regulates","term_name":"calcium ion transport into cytosol","termid":"GO:0060402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"positive regulation of calcium ion transport into cytosol","termid":"GO:0010524"}


id: PBO:0113081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cysteine desulfurase involved in iron-sulfur cluster biogenesis; required for thio-modification of mitochondrial and cytoplasmic tRNAs; involved in DNA damage response by providing iron-sulfur cluster cofactors for DNA repair enzymes; essential protein located predominantly in mitochondria","termid":"PBO:0113081"}


id: PBO:0078602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 60 pseudogene 15","termid":"PBO:0078602"}


id: GO:0045461
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of sterigmatocystin, a carcinogenic mycotoxin produced in high yields by strains of the common molds.","definition_xrefs":["PMID:10618248"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toxin biosynthetic process","termid":"GO:0009403"},{"relation_name":"is_a","term_name":"sterigmatocystin metabolic process","termid":"GO:0045460"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"sterigmatocystin biosynthetic process","synonyms":[{"name":"sterigmatocystin anabolism","type":"exact"},{"name":"sterigmatocystin biosynthesis","type":"exact"},{"name":"sterigmatocystin formation","type":"exact"},{"name":"sterigmatocystin synthesis","type":"exact"}],"termid":"GO:0045461"}


id: PBO:0061454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 5 group A member 2","termid":"PBO:0061454"}


id: PR:Q9UT07
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A PRELI domain-containing protein 1, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02214","PRO:DNx","PANTHER:PTHR11158:SF16"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein ups1 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAP8A3.10","secondary_identifiers":["UniProtKB:Q9UT07"],"synonyms":[{"name":"Spom972h-PRELID1","type":"exact"}],"termid":"PR:Q9UT07"}


id: MONDO:0005237
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pleomorphic liposarcoma (obsolete MONDO:0005237)","termid":"MONDO:0005237","xrefs":{"Monarch":{"xref_id":"0005237"}}}


id: GO:0008707
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: myo-inositol hexakisphosphate + H2O = 1-myo-inositol 1,2,3,4,5-pentakisphosphate + phosphate.","definition_xrefs":["EC:3.1.3.26"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0016788","GO:0003824"],"is_obsolete":false,"name":"4-phytase activity","secondary_identifiers":["MetaCyc:RXN-7241","RHEA:20960"],"synonyms":[{"name":"6-phytase (name based on 1L-numbering system and not 1D-numbering)","type":"broad"},{"name":"6-phytase activity","type":"exact"},{"name":"myo-inositol-hexakisphosphate 6-phosphohydrolase activity","type":"related"},{"name":"phytase activity","type":"broad"},{"name":"phytate 6-phosphatase activity","type":"related"}],"termid":"GO:0008707"}


id: PBO:0036553
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TYRosine requiring","termid":"PBO:0036553"}


id: MONDO:0021440
data:
  {"annotated_genes":["SJAG_02855","SJAG_03453"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87156],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010621"},{"annotations":[88631],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044792"},{"annotations":[87708],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008097"},{"annotations":[87287],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009578"},{"annotations":[86848],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008093"}]},"cv_name":"mondo","definition":"A benign neoplasm that involves the zone of skin.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integumentary system benign neoplasm","termid":"MONDO:0000652"},{"relation_name":"is_a","term_name":"skin neoplasm","termid":"MONDO:0002531"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02855":null,"SJAG_03453":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"benign neoplasm of skin","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICD9:216.8","ICD9:216.9","MEDGEN:2197","NCIT:C2896","SCTID:92384009","UMLS:C0004998"],"synonyms":[{"name":"benign cutaneous neoplasm","type":"exact"},{"name":"benign cutaneous tumor","type":"exact"},{"name":"benign cutaneous tumour","type":"exact"},{"name":"benign neoplasm of the skin","type":"exact"},{"name":"benign skin neoplasm","type":"exact"},{"name":"benign skin tumor","type":"exact"},{"name":"benign skin tumour","type":"exact"},{"name":"benign tumor of skin","type":"exact"},{"name":"benign tumor of the skin","type":"exact"},{"name":"benign tumour of skin","type":"exact"},{"name":"benign tumour of the skin","type":"exact"},{"name":"skin neoplasms, benign","type":"exact"},{"name":"zone of skin benign neoplasm","type":"exact"}],"termid":"MONDO:0021440","terms_by_termid":{"MONDO:0008093":null,"MONDO:0008097":null,"MONDO:0009578":null,"MONDO:0010621":null,"MONDO:0044792":null},"xrefs":{"Monarch":{"xref_id":"0021440"}}}


id: PBO:0087972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Trifunctional enzyme of thiamine biosynthesis, degradation and salvage; has hydroxymethylpyrimidine (HMP) kinase, HMP-phosphate (HMP-P) kinase and thiaminase activities; member of a gene family with THI21 and THI22; HMP and HMP-P kinase activity redundant with Thi21p","termid":"PBO:0087972"}


id: MONDO:0100448
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A retinopathy caused by biallelic variants in the RAB28 gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"RAB28-related retinopathy","synonyms":[{"name":"CORD18","type":"narrow"},{"name":"RAB28 cone-rod dystrophy","type":"narrow"},{"name":"RAB28 retinopathy","type":"exact"},{"name":"cone-rod dystrophy 18","type":"narrow"},{"name":"cone-rod dystrophy caused by mutation in RAB28","type":"narrow"},{"name":"cone-rod dystrophy type 18","type":"narrow"}],"termid":"MONDO:0100448","xrefs":{"Monarch":{"xref_id":"0100448"}}}


id: PBO:0074515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small NF90 (ILF3) associated RNA A7","termid":"PBO:0074515"}


id: PBO:0059174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanocortin 2 receptor accessory protein","termid":"PBO:0059174"}


id: PBO:0002039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"xylose and arabinose reductase (predicted)","termid":"PBO:0002039"}


id: PBO:0056808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MFSD4A antisense RNA 1","termid":"PBO:0056808"}


id: GO:0106432
data:
  {"annotated_genes":["SJAG_01781","SJAG_02179"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100502,100503],"is_not":false,"summary":null,"term":"GO:0106432"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: queuosine 5'-phosphate + H2O = queuine + D-ribose 5-phosphate.","definition_xrefs":["PMID:35940128","RHEA:75387"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleosidase activity","termid":"GO:0008477"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01781":null,"SJAG_02179":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016798","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"queuosine nucleosidase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"queuosine nucleoside glycosylase","type":"exact"},{"name":"tRNA queuosine nucleoside glycosylase","type":"exact"}],"termid":"GO:0106432","terms_by_termid":{"GO:0106432":null}}


id: FYPO:0005404
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which chromosomes remain linear, but lose telomeric repeats. Subtelomeric DNA may also be lost.","definition_xrefs":["PomBase:mah","PMID:12930956"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromosome morphology during vegetative growth","termid":"FYPO:0000848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000641","FYPO:0000654","FYPO:0000661","FYPO:0000652","FYPO:0001985","FYPO:0000002","FYPO:0000707"],"is_obsolete":false,"name":"telomeric regions absent from linear chromosomes","synonyms":[{"name":"telomeric regions absent from linear chromosomes during mitotic cell cycle","type":"related"},{"name":"telomeric regions absent from linear chromosomes during vegetative growth","type":"exact"}],"termid":"FYPO:0005404"}


id: PR:Q9UUJ9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A propionyl-CoA:succinate CoA transferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02074"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetyl-CoA hydrolase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1952.09c","secondary_identifiers":["UniProtKB:Q9UUJ9"],"synonyms":[{"name":"Spom972h-scpC","type":"exact"},{"name":"acetyl-CoA acylase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"acetyl-CoA deacylase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UUJ9"}


id: PBO:0048330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 41","termid":"PBO:0048330"}


id: PBO:0066393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"receptor accessory protein 3","termid":"PBO:0066393"}


id: FYPO:0003674
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which ATPase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal ATPase activity","termid":"FYPO:0001167"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000661","FYPO:0000707","FYPO:0000654","FYPO:0000652"],"is_obsolete":false,"name":"abolished ATPase activity","synonyms":[{"name":"ATPase activity abolished","type":"exact"}],"termid":"FYPO:0003674"}


id: GO:0061055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the myotome over time, from its formation to the mature structure. The myotome is the portion of the somite that will give rise to muscle.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"somite development","termid":"GO:0061053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myotome development","termid":"GO:0061055"}


id: GO:0099015
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The catabolic breakdown of the DNA of a host chromosome by a virus. This occurs during infection of bacteria by some phages. It frees up a large pool of nucleoside 5'-triphophates for use in viral DNA synthesis.","definition_xrefs":["PMID:335083","PMID:163355","PMID:3972821","PMID:5263754","VZ:3947"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"},{"relation_name":"part_of","term_name":"viral DNA genome replication","termid":"GO:0039693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006259"],"is_obsolete":false,"name":"degradation of host chromosome by virus","termid":"GO:0099015"}


id: MONDO:1010775
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pemphigus that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pemphigus, non-human animal","termid":"MONDO:1010138"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pemphigus, cattle","secondary_identifiers":["OMIA:001188-9913"],"termid":"MONDO:1010775","xrefs":{"Monarch":{"xref_id":"1010775"}}}


id: MONDO:0012548
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Kostmann syndrome is a rare, severe, congenital neutropenia disorder characterized by a lack of mature neutrophils (absolute neutrophil counts less than 500 cells/mm3) associated with frequent, recurrent bacterial infections (e.g. otitis media, pneumonia, sinusitis, urinary tract infections, abscesses of skin and/or liver) and increased promyelocytes in the bone marrow. Periodontal disease, as well as neurological symptoms, such as cognitive impairment, severe neurodegeneration and epilepsy, have been reported in some patients.","definition_xrefs":["Orphanet:99749"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"},{"relation_name":"is_a","term_name":"autosomal recessive severe congenital neutropenia","termid":"MONDO:0028226"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046","MONDO:0006025"],"is_obsolete":false,"name":"Kostmann syndrome","secondary_identifiers":["DOID:0112133","icd11.foundation:421553273","GARD:302","NCIT:C166153","MEDGEN:1713491","OMIM:610738","UMLS:C5235141"],"synonyms":[{"name":"Kostmann disease","type":"related"},{"name":"SCN3","type":"related"},{"name":"agranulocytosis infantile","type":"related"},{"name":"agranulocytosis, infantile","type":"related"},{"name":"infantile agranulocytosis","type":"exact"},{"name":"neutropenia, severe congenital 3, autosomal recessive","type":"exact"},{"name":"neutropenia, severe congenital, 3, autosomal recessive","type":"related"},{"name":"severe congenital neutropenia autosomal recessive 3","type":"related"},{"name":"severe congenital neutropenia type 3","type":"exact"}],"termid":"MONDO:0012548","xrefs":{"Monarch":{"xref_id":"0012548"}}}


id: PBO:0056775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase like 25","termid":"PBO:0056775"}


id: MONDO:0007840
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"internal carotid artery, spontaneous dissection of","secondary_identifiers":["MESH:C564125","MEDGEN:333477","OMIM:147820","UMLS:C1840073"],"synonyms":[{"name":"internal carotid artery, spontaneous dissection of","type":"exact"}],"termid":"MONDO:0007840","xrefs":{"Monarch":{"xref_id":"0007840"}}}


id: FYPO:0001277
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which MCM complex assembly is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal MCM complex assembly","termid":"FYPO:0000448"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abolished MCM complex assembly","synonyms":[{"name":"MCM complex assembly abolished","type":"exact"},{"name":"abolished MCM complex assembly during mitotic cell cycle","type":"related"},{"name":"abolished MCM complex assembly during vegetative growth","type":"exact"}],"termid":"FYPO:0001277"}


id: PBO:0000238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoside diphosphate kinase Ndk1","termid":"PBO:0000238"}


id: PBO:0057560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 711","termid":"PBO:0057560"}


id: GO:1900101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of endoplasmic reticulum unfolded protein response.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular signal transduction","termid":"GO:1902531"},{"relation_name":"is_a","term_name":"regulation of response to endoplasmic reticulum stress","termid":"GO:1905897"},{"relation_name":"regulates","term_name":"endoplasmic reticulum unfolded protein response","termid":"GO:0030968"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of endoplasmic reticulum unfolded protein response","synonyms":[{"name":"regulation of ER unfolded protein response","type":"exact"},{"name":"regulation of SREBP-mediated signalling pathway","type":"related"},{"name":"regulation of erUPR","type":"exact"}],"termid":"GO:1900101"}


id: GO:0046026
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + precorrin-4 = S-adenosyl-L-homocysteine + precorrin 5.","definition_xrefs":["EC:2.1.1.133"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"precorrin-4 C11-methyltransferase activity","secondary_identifiers":["RHEA:22012","MetaCyc:2.1.1.133-RXN"],"synonyms":[{"name":"CobM","type":"related"},{"name":"S-adenosyl-L-methionine:precorrin-4 C11 methyltransferase activity","type":"related"}],"termid":"GO:0046026"}


id: GO:0048530
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a fruit are generated and organized. A fruit is a reproductive body of a seed plant.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"post-embryonic plant morphogenesis","termid":"GO:0090698"},{"relation_name":"part_of","term_name":"fruit development","termid":"GO:0010154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fruit morphogenesis","termid":"GO:0048530"}


id: GO:0046793
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus activates the frequency, rate or extent of phosphorylation of host RNA polymerase II.","definition_xrefs":["PMID:7637000"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by virus of phosphorylation of host RNA polymerase II (obsolete GO:0046793)","synonyms":[{"name":"induction by virus of modification of host RNA polymerase II","type":"broad"},{"name":"virus-induced modification of host RNA polymerase II","type":"exact"}],"termid":"GO:0046793"}


id: GO:0045205
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the directed movement of MAP kinase into, out of or within a cell, or between cells.","definition_xrefs":["GOC:mtg_transport","GOC:ebc","ISBN:0815340729"],"gene_count":0,"genotype_count":0,"name":"obsolete MAPK transporter activity (obsolete GO:0045205)","synonyms":[{"name":"MAPK transporter activity","type":"exact"}],"termid":"GO:0045205"}


id: PBO:0051467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable (I)-42 (pseudogene)","termid":"PBO:0051467"}


id: PBO:0001851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphosphomevalonate decarboxylase (predicted)","termid":"PBO:0001851"}


id: GO:0003902
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA-directed RNA polymerase III activity (obsolete GO:0003902)","synonyms":[{"name":"DNA-directed RNA polymerase III activity","type":"exact"}],"termid":"GO:0003902"}


id: GO:0043664
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A host-derived membrane that surrounds one or more bacteroids (such as nitrogen-fixing bacteroids within legume root nodule cells).","definition_xrefs":["GOC:cc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"},{"relation_name":"part_of","term_name":"host bacteroid-containing symbiosome","termid":"GO:0043663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host peribacteroid membrane","termid":"GO:0043664"}


id: PR:O13632
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A dual specificity protein phosphatase 12 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02852"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine-protein phosphatase yvh1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17A3.06","secondary_identifiers":["UniProtKB:O13632"],"synonyms":[{"name":"PTPase yvh1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-DUSP12","type":"exact"}],"termid":"PR:O13632"}


id: PBO:0013793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IRC1-R/borderline right","termid":"PBO:0013793"}


id: PBO:0110170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitocondrial and tRNA (guanine-N2-)-methyltransferase Trm1","termid":"PBO:0110170"}


id: PBO:0027046
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_2-oxoglutarate_dioxygenase_activity","termid":"PBO:0027046"}


id: GO:1904695
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vascular smooth muscle contraction.","definition_xrefs":["GO_REF:0000058","GOC:BHF","GOC:rph","GOC:TermGenie","GOC:BHF_miRNA","PMID:22158624"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vascular associated smooth muscle contraction","termid":"GO:0003056"},{"relation_name":"is_a","term_name":"positive regulation of vasoconstriction","termid":"GO:0045907"},{"relation_name":"is_a","term_name":"positive regulation of smooth muscle contraction","termid":"GO:0045987"},{"relation_name":"positively_regulates","term_name":"vascular associated smooth muscle contraction","termid":"GO:0014829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vascular associated smooth muscle contraction","synonyms":[{"name":"activation of vascular smooth muscle contraction","type":"narrow"},{"name":"positive regulation of vascular smooth muscle contraction","type":"exact"},{"name":"up regulation of vascular smooth muscle contraction","type":"exact"},{"name":"up-regulation of vascular smooth muscle contraction","type":"exact"},{"name":"upregulation of vascular smooth muscle contraction","type":"exact"}],"termid":"GO:1904695"}


id: PATO:0000868
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000868 vibrissae reflex value (obsolete PATO:0000868)","termid":"PATO:0000868"}


id: PBO:0087846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Topoisomerase I; nuclear enzyme that relieves torsional strain in DNA by cleaving and re-sealing the phosphodiester backbone; relaxes both positively and negatively supercoiled DNA; functions in replication, transcription, and recombination; role in processing ribonucleoside monophosphates in genomic DNA into irreversible single-strand breaks; enzymatic activity and interaction with Nsr1p are negatively regulated by polyphosphorylation","termid":"PBO:0087846"}


id: FYPO:0005242
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population phenotype in which cell growth is decreased relative to normal in a medium containing glutamine as the nitrogen source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002058","FYPO:0002060","FYPO:0002057","FYPO:0001985","FYPO:0005447","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"decreased cell population growth on glutamine nitrogen source","synonyms":[{"name":"decreased growth on glutamine nitrogen source","type":"broad"},{"name":"decreased vegetative cell growth on glutamine nitrogen source","type":"exact"},{"name":"growth defect, slow growth with glutamine nitrogen source","type":"narrow"},{"name":"reduced cell growth on glutamine nitrogen source","type":"exact"},{"name":"slow cell growth on glutamine nitrogen source","type":"narrow"}],"termid":"FYPO:0005242"}


id: PBO:0089557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic tetraspan protein, claudin Dni2","termid":"PBO:0089557"}


id: SO:0001215
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The region of an exon that encodes for protein sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exon_region","termid":"SO:0000852"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coding_region_of_exon","synonyms":[{"name":"coding region of exon","type":"exact"}],"termid":"SO:0001215"}


id: PBO:0062546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 9 subfamily K member 2","termid":"PBO:0062546"}


id: PBO:0081237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 3","termid":"PBO:0081237"}


id: PBO:0002610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxyhypusine hydroxylase (predicted)","termid":"PBO:0002610"}


id: PBO:0016584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein, involved in chromatin silencing by small RNA, Snd1","termid":"PBO:0016584"}


id: MOD:01189
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Isotopic label -","definition_xrefs":["PubMed:12766232","Unimod:212#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-ethyl iodoacetamide-d5","termid":"MOD:00562"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-ethyl iodoacetamide-d5 - site C","synonyms":[{"name":"N-ethyl iodoacetamide-d5","type":"related"},{"name":"NEIAA:2H(5)","type":"related"}],"termid":"MOD:01189"}


id: PBO:0066153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RB binding protein 6, ubiquitin ligase","termid":"PBO:0066153"}


id: PBO:0044519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DAAM2 antisense RNA 1","termid":"PBO:0044519"}


id: PBO:0077940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 1-1","termid":"PBO:0077940"}


id: PBO:0072357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 43","termid":"PBO:0072357"}


id: GO:0002476
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class Ib protein complex. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family.","definition_xrefs":["GOC:add","PMID:15928678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of peptide antigen via MHC class Ib","termid":"GO:0002428"},{"relation_name":"is_a","term_name":"antigen processing and presentation of endogenous peptide antigen","termid":"GO:0002483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of endogenous peptide antigen via MHC class Ib","synonyms":[{"name":"endogenous peptide antigen processing and presentation via MHC class Ib","type":"exact"}],"termid":"GO:0002476"}


id: MONDO:0006145
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A slow-growing malignant bone tumor arising from the remnants of the notochord and occurring in the base of the skull. The tumor is characterized by a lobulated growth pattern, myxoid stroma formation, and the presence of physaliphorous cells and cartilage.","definition_xrefs":["NCIT:C6902"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chordoma","termid":"MONDO:0008978"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondroid chordoma","secondary_identifiers":["MEDGEN:224768","UMLS:C1266173","ICDO:9371/3","DOID:4152","EFO:1000174"],"synonyms":[{"name":"chondroid chordoma","type":"exact"},{"name":"chondroid chordoma (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0006145","xrefs":{"Monarch":{"xref_id":"0006145"}}}


id: PBO:0002169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TLDc domain protein 1","termid":"PBO:0002169"}


id: PBO:0085305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphatase and transcription/RNA-processing factor; associates with TFIIB and cleavage/polyadenylation factor Pta1p; exhibits phosphatase activity on serine-5 and serine-7 of the RNA polymerase II C-terminal domain; affects start site selection and transcriptional read through in vivo","termid":"PBO:0085305"}


id: FYPO:0009003
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which karyogamy involved in conjugation with cellular fusion does not occur, despite the nuclei and their SPBs coming together.","definition_xrefs":["PomBase:mlr","PMID:36650056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished nuclear fusion during mating","termid":"FYPO:0000511"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000301","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished nuclear fusion with normal nuclear congression during mating","synonyms":[{"name":"nuclear congression without nuclear fusion","type":"exact"}],"termid":"FYPO:0009003"}


id: MONDO:0012189
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Amish infantile epilepsy syndrome (obsolete MONDO:0012189)","termid":"MONDO:0012189","xrefs":{"Monarch":{"xref_id":"0012189"}}}


id: MONDO:0013092
data:
  {"annotated_genes":["SJAG_03131"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89152],"is_not":false,"summary":null,"term":"MONDO:0013092"}]},"cv_name":"mondo","definition":"Any malignant glioma in which the cause of the disease is a mutation in the PTEN gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glioma susceptibility","termid":"MONDO:0100242"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03131":null},"genotype_count":0,"is_obsolete":false,"name":"glioma susceptibility 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C2751642","MEDGEN:414431","OMIM:613028"],"synonyms":[{"name":"GLM2","type":"related"},{"name":"PTEN malignant glioma","type":"exact"},{"name":"glioma susceptibility 2","type":"exact"},{"name":"glioma susceptibility type 2","type":"exact"},{"name":"malignant glioma caused by mutation in PTEN","type":"exact"}],"termid":"MONDO:0013092","terms_by_termid":{"MONDO:0013092":null},"xrefs":{"Monarch":{"xref_id":"0013092"}}}


id: GO:1902904
data:
  {"annotated_genes":["SJAG_00279","SJAG_01993","SJAG_02700","SJAG_01894","SJAG_03455"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80924,77314,81977,94206],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051016"},{"annotations":[76270],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034316"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of fibril organization.","definition_xrefs":["GOC:TermGenie","PMID:23921388","GOC:rl","GOC:PARL","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular component organization","termid":"GO:0051129"},{"relation_name":"is_a","term_name":"regulation of supramolecular fiber organization","termid":"GO:1902903"},{"relation_name":"negatively_regulates","term_name":"supramolecular fiber organization","termid":"GO:0097435"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_01894":null,"SJAG_01993":null,"SJAG_02700":null,"SJAG_03455":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of supramolecular fiber organization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of fibril organisation","type":"related"},{"name":"down regulation of fibril organization","type":"related"},{"name":"down-regulation of fibril organisation","type":"related"},{"name":"down-regulation of fibril organization","type":"related"},{"name":"downregulation of fibril organisation","type":"related"},{"name":"downregulation of fibril organization","type":"related"},{"name":"inhibition of fibril organisation","type":"narrow"},{"name":"inhibition of fibril organization","type":"narrow"},{"name":"negative regulation of fibril organisation","type":"related"}],"termid":"GO:1902904","terms_by_termid":{"GO:0034316":null,"GO:0051016":null}}


id: PBO:0052590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin subunit alpha 1","termid":"PBO:0052590"}


id: FYPO:0006624
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-3,4,5-trisphosphate measured in the plasma membrane is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal plasma membrane during vegetative growth","termid":"FYPO:0003278"},{"relation_name":"is_a","term_name":"increased cellular phosphatidylinositol-3,4,5-trisphosphate level","termid":"FYPO:0006488"},{"relation_name":"is_a","term_name":"altered level of substance in plasma membrane","termid":"FYPO:0008331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased phosphatidylinositol-3,4,5-trisphosphate level in plasma membrane","synonyms":[{"name":"increased 1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate level in plasma membrane","type":"exact"},{"name":"increased phosphatidylinositol-3,4,5-trisphosphate level in cell membrane","type":"exact"},{"name":"increased phosphatidylinositol-3,4,5-trisphosphate level in plasma membrane during mitotic cell cycle","type":"related"},{"name":"increased phosphatidylinositol-3,4,5-trisphosphate level in plasma membrane during vegetative growth","type":"exact"},{"name":"increased plasma membrane PI(3,4,5)P3 level","type":"exact"},{"name":"increased plasma membrane phosphatidylinositol-3,4,5-trisphosphate level","type":"exact"}],"termid":"FYPO:0006624"}


id: GO:0075037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of symbiont appressorium maturation.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of appressorium maturation (obsolete GO:0075037)","synonyms":[{"name":"positive regulation maturation of appressorium on or near host","type":"exact"},{"name":"positive regulation of appressorium maturation on or near host","type":"related"}],"termid":"GO:0075037"}


id: MOD:01038
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because this represents a free amino acid and the corresponding residue is MOD:01026.","definition_xrefs":["DeltaMass:0"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:01038 norleucine (Nle) (obsolete MOD:01038)","termid":"MOD:01038"}


id: PBO:0117168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CFAP97D1 antisense RNA 1","termid":"PBO:0117168"}


id: MONDO:0016417
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital ichthyosis-microcephalus-tetraplegia syndrome","secondary_identifiers":["Orphanet:2271","UMLS:C5679626","GARD:1489","MEDGEN:1809863"],"synonyms":[{"name":"congenital ichthyosis-microcephalus-quadriplegia syndrome","type":"exact"}],"termid":"MONDO:0016417","xrefs":{"Monarch":{"xref_id":"0016417"}}}


id: MONDO:0015450
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare congenital abnormality of the heart characterized by the presence of three atria. The right or left atrium is divided into two parts by fibromuscular tissue or a membrane. It may be associated with other heart congenital abnormalities.","definition_xrefs":["NCIT:C84651"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital heart malformation","termid":"MONDO:0019512"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"triatrial heart","secondary_identifiers":["Orphanet:1463","SCTID:55510008","MEDGEN:3238","NANDO:2200263","NANDO:2100083","NORD:1007","UMLS:C0009995","ICD9:746.82","GARD:6194"],"synonyms":[{"name":"Cor Triatriatum","type":"exact"},{"name":"Cor triatriatum","type":"exact"}],"termid":"MONDO:0015450","xrefs":{"Monarch":{"xref_id":"0015450"}}}


id: PBO:0077181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"toll like receptor 5","termid":"PBO:0077181"}


id: PR:O74791
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A guanine nucleotide-binding protein-like 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03930"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase grn1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC26H8.08c","secondary_identifiers":["UniProtKB:O74791"],"synonyms":[{"name":"GTPase in ribosomal export from the nucleolus protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GNL3","type":"exact"},{"name":"nuclear GTP-binding protein grn1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74791"}


id: PBO:0068552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 3, pseudogene","termid":"PBO:0068552"}


id: PBO:0058877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 10393","termid":"PBO:0058877"}


id: CHEBI:6636
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"magnesium dichloride","termid":"CHEBI:6636"}


id: MONDO:0012961
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing type 1 diabetes mellitus that has material basis in mutation of the locus at chromosome 4q27.","definition_xrefs":["PMID:8072542","MONDO:patterns/inherited_susceptibility","DOID:0110760"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"type 1 diabetes mellitus","termid":"MONDO:0005147"},{"relation_name":"is_a","term_name":"diabetes mellitus, insulin-dependent, X-linked, susceptibility to","termid":"MONDO:0010255"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"type 1 diabetes mellitus 23","secondary_identifiers":["MEDGEN:382610","UMLS:C2675472","OMIM:612622","MESH:C567233"],"synonyms":[{"name":"IDDM23","type":"exact"},{"name":"diabetes mellitus, insulin-dependent, 23","type":"related"},{"name":"insulin-dependent diabetes mellitus 23","type":"exact"}],"termid":"MONDO:0012961","xrefs":{"Monarch":{"xref_id":"0012961"}}}


id: PBO:0029943
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination_with_elongated_germ_tube_and_cell_lysis","termid":"PBO:0029943"}


id: GO:0042642
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The myosin part of any complex of actin, myosin, and accessory proteins.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myosin complex","termid":"GO:0016459"},{"relation_name":"part_of","term_name":"actomyosin","termid":"GO:0042641"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0015629"],"is_obsolete":false,"name":"actomyosin, myosin complex part","termid":"GO:0042642"}


id: PBO:0054690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2099","termid":"PBO:0054690"}


id: PBO:0088540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho-type GTPase activating protein, with zinc finger, LIM-type","termid":"PBO:0088540"}


id: PBO:0056295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule associated protein 1B","termid":"PBO:0056295"}


id: GO:0045772
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases autophagosome size.","definition_xrefs":["GOC:autophagy","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of autophagosome size","termid":"GO:0016243"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006914"}],"interesting_parent_ids":["GO:0006914","GO:0008150"],"is_obsolete":false,"name":"positive regulation of autophagosome size","synonyms":[{"name":"activation of autophagic vacuole size","type":"narrow"},{"name":"positive regulation of autophagic vacuole size","type":"exact"},{"name":"stimulation of autophagic vacuole size","type":"narrow"},{"name":"up regulation of autophagic vacuole size","type":"exact"},{"name":"up-regulation of autophagic vacuole size","type":"exact"},{"name":"upregulation of autophagic vacuole size","type":"exact"}],"termid":"GO:0045772"}


id: GO:0102624
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + scutellarein 7-methyl ether = H+ + ladanein + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:73239"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"scutellarein 7-methyl ether 4'-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-15529"],"termid":"GO:0102624"}


id: GO:0015973
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of guanine pentaphosphate (5'-pppGpp-3'), a derivative of guanine riboside with five phosphates.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide biosynthetic process","termid":"GO:0009152"},{"relation_name":"is_a","term_name":"guanosine pentaphosphate metabolic process","termid":"GO:0015972"},{"relation_name":"is_a","term_name":"purine ribonucleoside bisphosphate biosynthetic process","termid":"GO:0034036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"guanosine pentaphosphate biosynthetic process","synonyms":[{"name":"guanosine pentaphosphate (5'-pppGpp-3') biosynthesis","type":"exact"},{"name":"guanosine pentaphosphate (5'-pppGpp-3') biosynthetic process","type":"exact"},{"name":"guanosine pentaphosphate anabolism","type":"exact"},{"name":"guanosine pentaphosphate biosynthesis","type":"exact"},{"name":"guanosine pentaphosphate formation","type":"exact"},{"name":"guanosine pentaphosphate synthesis","type":"exact"}],"termid":"GO:0015973"}


id: PBO:0002772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Nan1 (predicted)","termid":"PBO:0002772"}


id: PBO:0043561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type V alpha 3 chain","termid":"PBO:0043561"}


id: PBO:0067811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 113","termid":"PBO:0067811"}


id: GO:0008810
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.","definition_xrefs":["EC:3.2.1.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016798","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"cellulase activity","secondary_identifiers":["MetaCyc:RXN-2043"],"synonyms":[{"name":"1,4-(1,3;1,4)-beta-D-glucan 4-glucanohydrolase activity","type":"related"},{"name":"9.5 cellulase activity","type":"related"},{"name":"alkali cellulase activity","type":"narrow"},{"name":"avicelase activity","type":"related"},{"name":"beta-1,4-endoglucan hydrolase activity","type":"broad"},{"name":"beta-1,4-glucanase activity","type":"broad"},{"name":"carboxymethyl cellulase activity","type":"narrow"},{"name":"celluase A","type":"related"},{"name":"celludextrinase activity","type":"related"},{"name":"cellulase A 3","type":"related"},{"name":"cellulosin AP","type":"related"},{"name":"endo-1,4-beta-D-glucanase activity","type":"broad"},{"name":"endo-1,4-beta-D-glucanohydrolase activity","type":"broad"},{"name":"endo-1,4-beta-glucanase activity","type":"broad"},{"name":"endoglucanase D","type":"related"},{"name":"endoglucanase activity","type":"broad"},{"name":"pancellase SS","type":"related"}],"termid":"GO:0008810"}


id: PBO:0085617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in early stages of meiotic recombination; involved in coordination between the initiation of recombination and the first division of meiosis; part of a complex (Rec107p-Mei4p-Rec114p) required for ds break formation","termid":"PBO:0085617"}


id: PBO:0017413
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-precedes","termid":"PBO:0017413"}


id: MONDO:0008617
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inflammatory bowel disease that has material basis in variation in the chromosome region 7q22.","definition_xrefs":["PMID:8841195","DOID:0110894"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflammatory bowel disease","termid":"MONDO:0005265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0005046"],"is_obsolete":false,"name":"inflammatory bowel disease 11","secondary_identifiers":["MESH:C567154","OMIM:191390","UMLS:C2674051","MEDGEN:393069"],"synonyms":[{"name":"IBD11","type":"exact"},{"name":"inflammatory bowel disease 11","type":"exact"},{"name":"inflammatory bowel disease type 11","type":"exact"}],"termid":"MONDO:0008617","xrefs":{"Monarch":{"xref_id":"0008617"}}}


id: MONDO:0015321
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Pierre Robin syndrome associated with branchial archs anomalies (obsolete MONDO:0015321)","termid":"MONDO:0015321","xrefs":{"Monarch":{"xref_id":"0015321"}}}


id: PBO:0031837
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitochondrial_morphology","termid":"PBO:0031837"}


id: GO:0061725
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of lipid droplets and hydrolysis of stored triglycerides occurring through the orchestrated activation of cytosolic lipases.","definition_xrefs":["GOC:autophagy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid catabolic process","termid":"GO:0016042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"cytosolic lipolysis","termid":"GO:0061725"}


id: MONDO:1012401
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"dilute coat color with neurological defects, non-human animal","termid":"MONDO:1011883"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dilute coat color with neurological defects, horse","secondary_identifiers":["OMIA:001501-9796"],"termid":"MONDO:1012401","xrefs":{"Monarch":{"xref_id":"1012401"}}}


id: PR:G2TRU7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- wtf15 gene.","definition_xrefs":["UniProtKB:G2TRU7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein wtf15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC663.17","synonyms":[{"name":"Spom972h-wtf15","type":"exact"}],"termid":"PR:G2TRU7"}


id: GO:0099174
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the physical form of a presynapse.","definition_xrefs":["GOC:tb","GOC:ai","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synapse organization","termid":"GO:0050807"},{"relation_name":"regulates","term_name":"presynapse organization","termid":"GO:0099172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of presynapse organization","synonyms":[{"name":"regulation of presynapse organisation","type":"exact"},{"name":"regulation of presynapse organization and biogenesis","type":"related"},{"name":"regulation of presynapse structure","type":"exact"}],"termid":"GO:0099174"}


id: GO:0018214
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of a carboxy group to a protein amino acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein carboxylation","synonyms":[{"name":"protein amino acid carboxylation","type":"exact"}],"termid":"GO:0018214"}


id: PBO:0001918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L23","termid":"PBO:0001918"}


id: PBO:0065476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, non-ATPase 13","termid":"PBO:0065476"}


id: MONDO:0000427
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete autosomal recessive disease (obsolete MONDO:0000427)","termid":"MONDO:0000427","xrefs":{"Monarch":{"xref_id":"0000427"}}}


id: PBO:0059628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial carrier 2","termid":"PBO:0059628"}


id: PBO:0026643
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_kinetochore_during_mitotic_spindle_assembly_checkpoint_signaling","termid":"PBO:0026643"}


id: PATO:0000064
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000064 absolute percentage (obsolete PATO:0000064)","termid":"PATO:0000064"}


id: GO:0097146
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex consisting of NOXA and BCL-xl, members of the Bcl-2 family of anti- and proapoptotic regulators.","definition_xrefs":["GOC:so","PMID:14634621"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bcl-2 family protein complex","termid":"GO:0097136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"NOXA-BCL-xl complex","termid":"GO:0097146"}


id: GO:0052351
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism activates systemic acquired resistance in the symbiont organism; systemic acquired resistance is a salicylic acid-mediated response that confers broad spectrum systemic resistance. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by organism of systemic acquired resistance in symbiont (obsolete GO:0052351)","synonyms":[{"name":"activation by organism of SAR in symbiont","type":"exact"},{"name":"activation by organism of systemic acquired resistance in symbiont","type":"exact"},{"name":"induction by organism of SAR in symbiont","type":"exact"},{"name":"induction by organism of systemic acquired resistance in symbiont","type":"exact"}],"termid":"GO:0052351"}


id: PBO:0083735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential component of CPF (cleavage and polyadenylation factor); involved in 3' end formation of snoRNA and mRNA; interacts directly with Pta1p; relocalizes to the cytosol in response to hypoxia; similar to mammalian Cleavage-Stimulation Factor CstF-64","termid":"PBO:0083735"}


id: MONDO:0022841
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hypotrichosis","termid":"MONDO:0003037"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital hypotrichosis milia","termid":"MONDO:0022841","xrefs":{"Monarch":{"xref_id":"0022841"}}}


id: GO:0036159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an axonemal dynein inner arm, an inner arm structure present on the outer doublet microtubules of ciliary and flagellar axonemes.","definition_xrefs":["GOC:vk","PMID:19944400","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axonemal dynein complex assembly","termid":"GO:0070286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0000226","GO:0007010","GO:0065003"],"is_obsolete":false,"name":"inner dynein arm assembly","synonyms":[{"name":"IDA assembly","type":"exact"}],"termid":"GO:0036159"}


id: FYPO:0007944
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which any process of chromatin loop formation is abnormal during meiotic prophase I.","definition_xrefs":["PomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization during meiotic cell cycle","termid":"FYPO:0007943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000641","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"abnormal chromatin loop formation during meiotic prophase I","synonyms":[{"name":"abnormal chromatin looping during meiotic prophase I","type":"exact"}],"termid":"FYPO:0007944"}


id: PBO:0113248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-acetyl homoserine-O-acetyl serine sulfhydrylase; involved in methionine and cysteine biosynthesis; long considered essential for inorganic sulfur assimilation, but inefficient homocysteine synthase Hsu1p enables met17 null cells to assimilate enough inorganic sulfur for survival and proliferation; growth failure of met17 null can be explained by toxic accumulation of H2S gas due to a metabolic bottleneck","termid":"PBO:0113248"}


id: GO:0010432
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the bract over time, from its formation to the mature structure. A bract is a leaf, usually different in form from the foliage leaves, subtending a flower or inflorescence.","definition_xrefs":["PMID:16554366","GOC:tb","PO:0009055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phyllome development","termid":"GO:0048827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bract development","termid":"GO:0010432"}


id: PBO:0060868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIMA related kinase 11","termid":"PBO:0060868"}


id: PBO:0085942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; mutant sensitive to 6-azauracil (6AU) and mycophenolic acid (MPA)","termid":"PBO:0085942"}


id: FYPO:0006863
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a smaller than normal proportion of cells in the population remains viable after exposure to bleomycin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"},{"relation_name":"is_a","term_name":"cell population viability","termid":"FYPO:0002057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002057","FYPO:0000003"],"is_obsolete":false,"name":"loss of viability following cellular response to bleomycin","synonyms":[{"name":"decreased viability following cellular response to bleomycin","type":"exact"},{"name":"loss of cell population viability following cellular response to bleomycin","type":"exact"},{"name":"loss of viability following bleomycin exposure","type":"exact"},{"name":"reduced viability following cellular response to bleomycin","type":"related"}],"termid":"FYPO:0006863"}


id: GO:0001742
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of an oenocyte. Oenocytes are large secretory cells found in clusters underlying the epidermis of larval abdominal segments.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oenocyte differentiation","synonyms":[{"name":"oenocyte cell differentiation","type":"exact"}],"termid":"GO:0001742"}


id: PBO:0113468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of TORC1 and TORC2 involved in TOR signaling; TORC1 regulates nutrient responsive growth and TORC2 regulates plasma membrane (PM) homeostasis and cell-cycle dependent actin cytoskeleton polarization; negative regulator of Rtg1p/3p and Gln3p transcription factors and amino acid biosynthesis; binds to both Tor1p and Tor2p, regulating the integrity and kinase activity of TORC2; PM retention is dependent on Avo3p; WD-repeat protein","termid":"PBO:0113468"}


id: GO:0010563
data:
  {"annotated_genes":["SJAG_03170","SJAG_04422","SJAG_01187","SJAG_00053","SJAG_05314","SJAG_00685","SJAG_01906","SJAG_03940","SJAG_02380"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[59709,92282],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902647"},{"annotations":[74846,77912],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045820"},{"annotations":[117484,113358],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001211"},{"annotations":[120020],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905707"},{"annotations":[111706,114738],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071072"}]},"cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of phosphorus metabolic process","termid":"GO:0051174"},{"relation_name":"negatively_regulates","term_name":"phosphorus metabolic process","termid":"GO:0006793"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00053":null,"SJAG_00685":null,"SJAG_01187":null,"SJAG_01906":null,"SJAG_02380":null,"SJAG_03170":null,"SJAG_03940":null,"SJAG_04422":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of phosphorus metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"termid":"GO:0010563","terms_by_termid":{"GO:0045820":null,"GO:0071072":null,"GO:1902647":null,"GO:1905707":null,"GO:2001211":null}}


id: PATO:0000951
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color that falls about midway between red and blue in hue.","definition_xrefs":["Dictionary:http://dictionary.reference.com/"],"direct_ancestors":[{"relation_name":"is_a","term_name":"color","termid":"PATO:0000014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purple","termid":"PATO:0000951"}


id: PBO:0078846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily C member 2 (pseudogene)","termid":"PBO:0078846"}


id: PBO:0069580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 854, pseudogene","termid":"PBO:0069580"}


id: MONDO:1012984
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Parkinson disease that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neurological disease, non-human animal","termid":"MONDO:1012972"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Parkinson disease, non-human animal","termid":"MONDO:1012984","xrefs":{"Monarch":{"xref_id":"1012984"}}}


id: PBO:0077725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNRC6B divergent transcript","termid":"PBO:0077725"}


id: GO:0160072
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The binding activity of a molecule that brings together an ubiquitin ligase and an ubiquitin ligase-substrate adaptor, permitting those molecules to function in a coordinated way.","definition_xrefs":["PMID:27664236"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-macromolecule adaptor activity","termid":"GO:0030674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0030674"}],"interesting_parent_ids":["GO:0060090","GO:0030674","GO:0003674"],"is_obsolete":false,"name":"ubiquitin ligase complex scaffold activity","synonyms":[{"name":"core protein activity for the CUL-RING ubiquitin ligase complex","type":"narrow"},{"name":"core protein activity for the Cullin-RING ubiquitin ligase complex","type":"narrow"}],"termid":"GO:0160072"}


id: GO:0070836
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a caveola. A caveola is a plasma membrane raft that forms a small pit, depression, or invagination that communicates with the outside of a cell and extends inward, indenting the cytoplasm and the cell membrane.","definition_xrefs":["GOC:mah","GOC:vk","GOC:BHF","PMID:12633858"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane raft assembly","termid":"GO:0044854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0061024"],"is_obsolete":false,"name":"caveola assembly","synonyms":[{"name":"caveola formation","type":"exact"},{"name":"caveolar biogenesis","type":"related"}],"termid":"GO:0070836"}


id: PBO:0077767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOMM22 pseudogene 3","termid":"PBO:0077767"}


id: PBO:0061667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUP50 divergent transcript","termid":"PBO:0061667"}


id: MONDO:0016138
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete malignant lymphoma with peripheral neuropathy (obsolete MONDO:0016138)","secondary_identifiers":["Orphanet:207046"],"termid":"MONDO:0016138","xrefs":{"Monarch":{"xref_id":"0016138"}}}


id: PBO:0067234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 305, pseudogene","termid":"PBO:0067234"}


id: GO:0035121
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which the anatomical structures of the tail are generated and organized. The tail is the hindmost part of some animals.","definition_xrefs":["ISBN:0198612001"],"gene_count":0,"genotype_count":0,"name":"obsolete tail morphogenesis (obsolete GO:0035121)","synonyms":[{"name":"tail morphogenesis","type":"exact"}],"termid":"GO:0035121"}


id: MONDO:1012133
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin G deficiency, non-human animal","termid":"MONDO:1011727"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin G deficiency, horse","secondary_identifiers":["OMIA:000554-9796"],"termid":"MONDO:1012133","xrefs":{"Monarch":{"xref_id":"1012133"}}}


id: GO:0031499
data:
  {"annotated_genes":["SJAG_03984","SJAG_16455","SJAG_01176"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72026,78083,80832],"is_not":false,"summary":null,"term":"GO:0031499"}]},"cv_name":"cellular_component","definition":"A multiprotein complex having distributive polyadenylation activity of a variety of RNA substrates including hypomodified and incorrectly folded tRNAs, pre-snRNAs, pre-snoRNAs, incorrectly spliced or processed pre-mRNAs, cryptic unstable transcripts (CUTs), pre-rRNAs and rRNA fragments released as part of rRNA processing. In S. cerevisiae, the complex consists of either Pap2 (also known as Trf4) or Trf5, Air1 or Air2, and Mtr4, and is involved in RNA 3'-end processing and in RNA surveillance and quality control.","definition_xrefs":["PMID:17652137","PMID:15173578","PMID:15935759","PMID:17410208","PMID:16374505","PMID:16373491","PMID:16431988","PMID:15828860","PMID:15935758","PMID:16973437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01176":null,"SJAG_03984":null,"SJAG_16455":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"TRAMP complex","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Wikipedia:TRAMP_complex"],"synonyms":[{"name":"TRAMP4 complex","type":"narrow"},{"name":"TRAMP5 complex","type":"narrow"},{"name":"Trf4 complex","type":"narrow"},{"name":"Trf4 poly(A) polymerase complex","type":"narrow"},{"name":"Trf4p-Air2p-Mtr4p polyadenylation complex","type":"narrow"}],"termid":"GO:0031499","terms_by_termid":{"GO:0031499":null}}


