# terms

id: PBO:0048987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GC-rich promoter binding protein 1 like 1","termid":"PBO:0048987"}


id: GO:0019464
data:
  {"annotated_genes":["SJAG_02901","SJAG_03861","SJAG_03641"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75938,79829,98315],"is_not":false,"summary":null,"term":"GO:0019464"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex.","definition_xrefs":["MetaCyc:GLYCLEAV-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycine catabolic process","termid":"GO:0006546"},{"relation_name":"is_a","term_name":"ammonium ion metabolic process","termid":"GO:0097164"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02901":null,"SJAG_03641":null,"SJAG_03861":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"glycine decarboxylation via glycine cleavage system","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"glycine cleavage system","type":"broad"}],"termid":"GO:0019464","terms_by_termid":{"GO:0019464":null}}


id: MONDO:0015993
data:
  {"annotated_genes":["SJAG_04225","SJAG_01897"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88265],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014372"},{"annotations":[86910],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014669"}]},"cv_name":"mondo","definition":"Inherited retinal dystrophies that belong to the group of pigmentary retinopathies.","definition_xrefs":["Orphanet:1872"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01897":null,"SJAG_04225":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cone-rod dystrophy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:D000071700","DOID:0050572","OMIMPS:120970","NANDO:1200937","UMLS:C4085590","GARD:10790","ICD10CM:H35.5","MEDGEN:896366"],"synonyms":[{"name":"CRD","type":"exact"},{"name":"cone rod dystrophy","type":"related"},{"name":"cone-rod retinal dystrophy","type":"exact"}],"termid":"MONDO:0015993","terms_by_termid":{"MONDO:0014372":null,"MONDO:0014669":null},"xrefs":{"Monarch":{"xref_id":"0015993"}}}


id: GO:0030408
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-formimidoyltetrahydrofolate + glycine = (6S)-5,6,7,8-tetrahydrofolate + N-formimidoylglycine.","definition_xrefs":["RHEA:24288"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydroxymethyl-, formyl- and related transferase activity","termid":"GO:0016742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016741"],"is_obsolete":false,"name":"glycine formimidoyltransferase activity","secondary_identifiers":["KEGG_REACTION:R02729","MetaCyc:GLYCINE-FORMIMINOTRANSFERASE-RXN","EC:2.1.2.4"],"synonyms":[{"name":"5-formimidoyltetrahydrofolate:glycine N-formimidoyltransferase activity","type":"related"},{"name":"FIG formiminotransferase activity","type":"related"},{"name":"formimidoyltransferase activity","type":"broad"},{"name":"formiminoglycine formiminotransferase activity","type":"related"},{"name":"formiminotransferase activity","type":"broad"},{"name":"glycine formiminotransferase activity","type":"exact"}],"termid":"GO:0030408"}


id: PBO:0059395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S28","termid":"PBO:0059395"}


id: PBO:0071111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 113","termid":"PBO:0071111"}


id: MONDO:0005515
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary or metastatic malignant neoplasm involving the oral cavity. The majority are squamous cell carcinomas.","definition_xrefs":["NCIT:C9314"],"direct_ancestors":[{"relation_name":"is_a","term_name":"digestive system cancer","termid":"MONDO:0002516"},{"relation_name":"is_a","term_name":"oral cavity neoplasm","termid":"MONDO:0021245"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"oral cavity cancer","secondary_identifiers":["EFO:0005570","ICD9:144.9","ICD9:144.0","ICD9:145.8","ICD9:145.9","MEDGEN:56298","SCTID:363505006","ICD9:149.8","SCTID:363385007","UMLS:C0153381","ICD9:144","ICD9:144.1","DOID:8618"],"synonyms":[{"name":"cancer of oral cavity","type":"exact"},{"name":"malignant mouth neoplasm","type":"exact"},{"name":"malignant mouth tumor","type":"exact"},{"name":"malignant mouth tumour","type":"exact"},{"name":"malignant neoplasm of anterior portion of floor of mouth","type":"narrow"},{"name":"malignant neoplasm of floor of mouth","type":"narrow"},{"name":"malignant neoplasm of lateral floor of mouth","type":"narrow"},{"name":"malignant neoplasm of lateral portion of floor of mouth","type":"narrow"},{"name":"malignant neoplasm of mouth","type":"exact"},{"name":"malignant neoplasm of oral cavity","type":"exact"},{"name":"malignant neoplasm of the mouth","type":"exact"},{"name":"malignant oral cavity neoplasm","type":"exact"},{"name":"malignant oral cavity tumor","type":"exact"},{"name":"malignant oral cavity tumour","type":"exact"},{"name":"malignant tumor of anterior floor of mouth","type":"exact"},{"name":"malignant tumor of lateral floor of mouth","type":"exact"},{"name":"malignant tumor of mouth","type":"exact"},{"name":"malignant tumor of oral cavity","type":"exact"},{"name":"malignant tumor of the floor of the mouth","type":"narrow"},{"name":"malignant tumor of the mouth","type":"exact"},{"name":"malignant tumour of anterior floor of mouth","type":"exact"},{"name":"malignant tumour of lateral floor of mouth","type":"exact"},{"name":"malignant tumour of mouth","type":"exact"},{"name":"malignant tumour of oral cavity","type":"exact"},{"name":"malignant tumour of the floor of the mouth","type":"narrow"},{"name":"malignant tumour of the mouth","type":"exact"},{"name":"mouth cancer","type":"related"},{"name":"oral cavity cancer","type":"exact"}],"termid":"MONDO:0005515","xrefs":{"Monarch":{"xref_id":"0005515"}}}


id: MONDO:0015357
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hypoparathyroidism","termid":"MONDO:0001220"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secondary hypoparathyroidism due to impaired parathormon secretion","secondary_identifiers":["UMLS:C4305428","icd11.foundation:1229357339","MEDGEN:931097","GARD:19922","Orphanet:140286"],"termid":"MONDO:0015357","xrefs":{"Monarch":{"xref_id":"0015357"}}}


id: PBO:0004365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk21","termid":"PBO:0004365"}


id: FYPO:0003015
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An inviable phenotype observed in the vegetative growth phase of the life cycle in which a cell lyses, i.e. the plasma membrane ruptures and cytoplasm is lost, during a cellular response to salt stress. Note that in fission yeast cell lysis, the integrity of the cell wall is also compromised.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vegetative cell lysis","termid":"FYPO:0000647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"cell lysis during cellular response to salt stress","synonyms":[{"name":"cell lysis during cellular response to salt stress during mitotic cell cycle","type":"related"},{"name":"cell lysis during cellular response to salt stress during vegetative growth","type":"exact"},{"name":"cytolysis during cellular response to salt stress","type":"exact"},{"name":"inviable, lysed cell during cellular response to salt stress","type":"exact"},{"name":"lysed cell in response to salt stress","type":"exact"}],"termid":"FYPO:0003015"}


id: PBO:0047761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folate receptor gamma","termid":"PBO:0047761"}


id: GO:1903375
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of an acoustico-facial VII-VIII ganglion complex over time, from its formation to the mature structure.","definition_xrefs":["GOC:mat","GOC:TermGenie","GOC:PARL","GO_REF:0000094","GOC:bf","PMID:18356247"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial ganglion development","termid":"GO:0061550"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"facioacoustic ganglion development","synonyms":[{"name":"acoustico-facial VII-VIII ganglion complex development","type":"exact"},{"name":"acousticofacial ganglion development","type":"exact"},{"name":"facio-acoustic VII-VIII ganglion complex development","type":"exact"},{"name":"facio-acoustic ganglion complex VII-VIII development","type":"exact"},{"name":"facio-acoustic ganglion development","type":"exact"}],"termid":"GO:1903375"}


id: GO:1900189
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell adhesion involved in single-species biofilm formation.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell-substrate adhesion","termid":"GO:0010811"},{"relation_name":"is_a","term_name":"regulation of cell adhesion involved in single-species biofilm formation","termid":"GO:1900187"},{"relation_name":"positively_regulates","term_name":"cell adhesion involved in single-species biofilm formation","termid":"GO:0043709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of cell adhesion involved in single-species biofilm formation","synonyms":[{"name":"activation of cell adhesion during single-species biofilm formation","type":"related"},{"name":"activation of cell adhesion involved in single-species biofilm formation","type":"narrow"},{"name":"positive regulation of cell adhesion during single-species biofilm formation","type":"related"},{"name":"up regulation of cell adhesion during single-species biofilm formation","type":"related"},{"name":"up regulation of cell adhesion involved in single-species biofilm formation","type":"exact"},{"name":"up-regulation of cell adhesion during single-species biofilm formation","type":"related"},{"name":"up-regulation of cell adhesion involved in single-species biofilm formation","type":"exact"},{"name":"upregulation of cell adhesion during single-species biofilm formation","type":"related"},{"name":"upregulation of cell adhesion involved in single-species biofilm formation","type":"exact"}],"termid":"GO:1900189"}


id: PBO:0030060
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_protein_localization_to_mitotic_spindle_pole_body","termid":"PBO:0030060"}


id: GO:0031707
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an endothelin A receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bombesin receptor binding","termid":"GO:0031705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"endothelin A receptor binding","synonyms":[{"name":"endothelin A receptor ligand","type":"narrow"},{"name":"endothelin-1 receptor binding","type":"exact"}],"termid":"GO:0031707"}


id: GO:0001739
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Chromatin that is part of a sex chromosome.","definition_xrefs":["GOC:dos","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterochromatin","termid":"GO:0000792"},{"relation_name":"part_of","term_name":"sex chromosome","termid":"GO:0000803"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005694"],"is_obsolete":false,"name":"sex chromatin","termid":"GO:0001739"}


id: PBO:0067223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 292, pseudogene","termid":"PBO:0067223"}


id: GO:0060642
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a preadipocyte acquires specialized features of a white adipocyte of the mammary gland. White adipocytes have cytoplasmic lipids arranged in a unique vacuole.","definition_xrefs":["GOC:dph","PMID:12558599"],"direct_ancestors":[{"relation_name":"is_a","term_name":"white fat cell differentiation","termid":"GO:0050872"},{"relation_name":"part_of","term_name":"mammary gland fat development","termid":"GO:0060611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"white fat cell differentiation involved in mammary gland fat development","termid":"GO:0060642"}


id: GO:0007583
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete killer activity (obsolete GO:0007583)","synonyms":[{"name":"killer activity","type":"exact"}],"termid":"GO:0007583"}


id: MONDO:0010461
data:
  {"annotated_genes":["SJAG_00293"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88738],"is_not":false,"summary":null,"term":"MONDO:0010461"}]},"cv_name":"mondo","definition":"X-linked intellectual disability, Nascimento type is a rare X-linked intellectual disability syndrome characterized by intellectual disability (with severe speech impairment), a myxedematous appearance, dysmorphic facial features (including large head, synophrys, prominent supraorbital ridges, almond-shaped and deep-set eyes, large ears, wide mouth with everted lower lip and downturned lip corners), low posterior hairline, short, broad neck, marked general hirsutism and abnormal hair whorls, skin changes (e.g. dry skin or hypopigmented spots), widely spaced nipples, obesity, micropenis, onychodystrophy and seizures.","definition_xrefs":["Orphanet:163956"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00293":null},"genotype_count":0,"is_obsolete":false,"name":"syndromic X-linked intellectual disability Nascimento type","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3275464","GARD:17005","DOID:0060820","MEDGEN:477095","OMIM:300860"],"synonyms":[{"name":"MRXSN","type":"related"},{"name":"X-linked intellectual disability, Nascimento type","type":"related"},{"name":"X-linked intellectual disability-nail dystrophy-seizures syndrome","type":"exact"},{"name":"intellectual developmental disorder, X-linked syndromic, Nascimento type, X-linked recessive","type":"exact"},{"name":"intellectual disability, X-linked syndromic, Nascimento-type","type":"exact"},{"name":"intellectual disability, X-linked, syndromic 30","type":"related"},{"name":"intellectual disability, X-linked, syndromic, Nascimento type","type":"related"},{"name":"mental retardation, X-linked syndromic, Nascimento-type","type":"exact"},{"name":"mental retardation, X-linked, syndromic 30","type":"related"},{"name":"mental retardation, X-linked, syndromic, Nascimento type","type":"related"},{"name":"syndromic X-linked intellectual disability Nascimento type","type":"exact"}],"termid":"MONDO:0010461","terms_by_termid":{"MONDO:0010461":null},"xrefs":{"Monarch":{"xref_id":"0010461"}}}


id: PBO:0085379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane ATP binding cassette (ABC) transporter; multidrug transporter and general stress response factor implicated in cellular detoxification; regulated by Pdr1p, Pdr3p and Pdr8p; promoter contains a PDR responsive element; PDR15 has a paralog, PDR5, that arose from the whole genome duplication","termid":"PBO:0085379"}


id: PBO:0067826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 128","termid":"PBO:0067826"}


id: FYPO:0000083
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to enfumafungin. Cells stop growing (and may die) at a concentration of enfumafungin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0001985","FYPO:0002683","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to enfumafungin","synonyms":[{"name":"hypersensitive to enfumafungin","type":"exact"},{"name":"sensitive to enfumafungin during mitotic cell cycle","type":"related"},{"name":"sensitive to enfumafungin during vegetative growth","type":"exact"},{"name":"sensitive to glucan synthase inhibitor","type":"broad"}],"termid":"FYPO:0000083"}


id: FYPO:0003231
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 at heterochromatin domains occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah","PMID:24210919"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H3-K9 methylation during vegetative growth","termid":"FYPO:0000872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0002274","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"decreased histone H3-K9 methylation at heterochromatin domain during vegetative growth","synonyms":[{"name":"decreased histone H3 K9 methylation at heterochromatin domain during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 methylation at HOODs during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 methylation at heterochromatin domain during mitotic cell cycle","type":"related"},{"name":"decreased histone H3K9me at heterochromatin domain during vegetative growth","type":"exact"},{"name":"decreased histone lysine H3 K9 methylation at heterochromatin domain during vegetative growth","type":"exact"},{"name":"reduced histone H3-K9 methylation at heterochromatin domain during vegetative growth","type":"exact"}],"termid":"FYPO:0003231"}


id: GO:0000750
data:
  {"annotated_genes":["SJAG_01978","SJAG_01345","SJAG_00993","SJAG_01718","SJAG_02923","SJAG_03340","SJAG_00990"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72464],"is_not":false,"summary":null,"term":"GO:0000750"},{"annotations":[95204],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0090029"},{"annotations":[108233,91103,65812,98288,95205,98956],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071507"}]},"cv_name":"biological_process","definition":"A signal transduction process resulting in the relay, amplification or dampening of a signal generated in response to pheromone exposure in organisms that undergo conjugation with cellular fusion. An example of this process is found in Saccharomyces cerevisiae.","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction involved in positive regulation of conjugation with cellular fusion","termid":"GO:0032005"},{"relation_name":"part_of","term_name":"response to pheromone triggering conjugation with cellular fusion","termid":"GO:0000749"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00990":null,"SJAG_00993":null,"SJAG_01345":null,"SJAG_01718":null,"SJAG_01978":null,"SJAG_02923":null,"SJAG_03340":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0000747"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0000747"}],"interesting_parent_ids":["GO:0008150","GO:0000747","GO:0023052"],"is_obsolete":false,"name":"pheromone-dependent signal transduction involved in conjugation with cellular fusion","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["GO:0030454","GO:0007330"],"synonyms":[{"name":"transduction of mating signal","type":"broad"}],"termid":"GO:0000750","terms_by_termid":{"GO:0000750":null,"GO:0071507":null,"GO:0090029":null}}


id: FYPO:0003904
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the plasma membrane is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal plasma membrane morphology","synonyms":[{"name":"normal plasma membrane morphology during mitotic cell cycle","type":"related"},{"name":"normal plasma membrane morphology during vegetative growth","type":"exact"}],"termid":"FYPO:0003904"}


id: GO:0031059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The removal of acetyl groups from histones in centromeric DNA.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete histone deacetylation at centromere (obsolete GO:0031059)","termid":"GO:0031059"}


id: GO:0043169
data:
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id: MONDO:0006016
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id: GO:0072034
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id: PBO:0053858
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id: FYPO:0002840
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id: GO:0034955
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id: PBO:0081903
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id: MONDO:0008525
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id: GO:0044477
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id: PBO:0004572
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id: MONDO:0014769
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id: MONDO:0012864
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"2q32q33 microdeletion syndrome is a recently described syndrome characterized by a variable phenotype involving moderate to severe intellectual deficit, significant speech delay, persistent feeding difficulties, growth retardation and dysmorphic features.","definition_xrefs":["Orphanet:251019"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 2","termid":"MONDO:0016901"},{"relation_name":"is_a","term_name":"SATB2 associated disorder","termid":"MONDO:0100147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"chromosome 2q32-q33 deletion syndrome","secondary_identifiers":["MEDGEN:436765","MESH:C567350","OMIM:612313","SCTID:719659003","DOID:0060428","GARD:13206","Orphanet:576283","UMLS:C2676739"],"synonyms":[{"name":"2q32-q33 microdeletion syndrome","type":"exact"},{"name":"2q32q33 microdeletion syndrome","type":"exact"},{"name":"2q32q33 microdeletion syndromes","type":"related"},{"name":"Del(2)(q32)","type":"exact"},{"name":"Del(2)(q32q33)","type":"exact"},{"name":"SAS","type":"related"},{"name":"SATB2 syndrome","type":"related"},{"name":"SATB2-associated syndrome","type":"related"},{"name":"chromosome 2q32-q33 deletion syndrome","type":"exact"},{"name":"glass","type":"related"},{"name":"glass syndrome","type":"exact"},{"name":"monosomy 2q32","type":"exact"},{"name":"monosomy 2q32-q33","type":"exact"},{"name":"monosomy 2q32q33","type":"exact"}],"termid":"MONDO:0012864","xrefs":{"Monarch":{"xref_id":"0012864"}}}


id: PBO:0001402
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sir2 family histone deacetylase Hst4","termid":"PBO:0001402"}


id: GO:0019482
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id: GO:0006790
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id: MOD:01890
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id: FYPO:0003090
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which replication fork arrest at abnormal replication fork arrest at sites within the eukaryotic rDNA repeat spacer occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal replication fork arrest at rDNA repeats","termid":"FYPO:0003089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000641","FYPO:0000293","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased replication fork arrest at rDNA repeats","synonyms":[{"name":"decreased replication fork arrest at rDNA repeats during mitotic cell cycle","type":"related"},{"name":"decreased replication fork arrest at rDNA repeats during vegetative growth","type":"exact"},{"name":"decreased replication fork arrest at ribosomal DNA repeats","type":"exact"},{"name":"reduced replication fork arrest at rDNA repeats","type":"exact"}],"termid":"FYPO:0003090"}


id: PBO:0075394
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id: SO:0002265
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  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"LTR retrotransposons in the Gypsy superfamily contain elements coding for specific proteins in this order: GAG, AP, RT, RH, INT. GAG is a structural protein for virus-like particles. AP is aspartic proteinase. INT is a DDE integrase. RT is a reverse transcriptase. RH is RNAse H.","definition_xrefs":["PMID:17984973"],"direct_ancestors":[{"relation_name":"is_a","term_name":"LTR_retrotransposon","termid":"SO:0000186"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gypsy_LTR_retrotransposon","synonyms":[{"name":"Gypsy LTR retrotransposon","type":"exact"},{"name":"RLG retrotransposon","type":"exact"},{"name":"Ty3 retrotransposon","type":"exact"}],"termid":"SO:0002265"}


id: PBO:0046978
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id: PBO:0068544
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id: GO:0102849
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id: GO:0090273
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id: MONDO:0014280
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id: GO:0061944
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of K48-linked ubiquitination, a protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 48 of the ubiquitin monomers, is added to a protein. K48-linked ubiquitination targets the substrate protein for degradation.","definition_xrefs":["GOC:BHF","GOC:rph","PMID:23460740"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein K48-linked ubiquitination","termid":"GO:0061945"},{"relation_name":"is_a","term_name":"negative regulation of protein polyubiquitination","termid":"GO:1902915"},{"relation_name":"negatively_regulates","term_name":"protein K48-linked ubiquitination","termid":"GO:0070936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0070647"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0008150","GO:0070647"],"is_obsolete":false,"name":"negative regulation of protein K48-linked ubiquitination","termid":"GO:0061944"}


id: MONDO:0043112
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"kidney disorder","termid":"MONDO:0005240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"lachiewicz sibley syndrome","secondary_identifiers":["MESH:C538131","MEDGEN:419151","UMLS:C2931742"],"synonyms":[{"name":"hereditary renal disease and preauricular pits","type":"related"}],"termid":"MONDO:0043112","xrefs":{"Monarch":{"xref_id":"0043112"}}}


id: GO:0002003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process leading to the attainment of the full functional capacity of angiotensin by conversion of angiotensinogen into mature angiotensin in the blood.","definition_xrefs":["ISBN:0721643949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide hormone processing","termid":"GO:0016486"},{"relation_name":"part_of","term_name":"regulation of angiotensin levels in blood","termid":"GO:0002002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0051604","GO:0008150"],"is_obsolete":false,"name":"angiotensin maturation","secondary_identifiers":["GO:0002005","Reactome:R-HSA-2022377"],"synonyms":[{"name":"angiotensin catabolic process in blood","type":"narrow"}],"termid":"GO:0002003"}


id: GO:0043673
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The outer, sculptured layer of the exine, which lies above the nexine.","definition_xrefs":["PMID:5722147"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"exine","termid":"GO:0043668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"sexine","termid":"GO:0043673"}


id: MONDO:0007940
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"malignant hyperthermia, susceptibility to","termid":"MONDO:0800188"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malignant hyperthermia, susceptibility to, 3","secondary_identifiers":["MEDGEN:418956","MESH:C535696","OMIM:154276","UMLS:C2930982"],"synonyms":[{"name":"MHS3","type":"related"},{"name":"Mhs3","type":"related"},{"name":"malignant hyperpyrexia susceptibility type 3","type":"related"},{"name":"malignant hyperthermia susceptibility 3","type":"exact"},{"name":"malignant hyperthermia susceptibility type 3","type":"related"},{"name":"malignant hyperthermia, susceptibility to, 3","type":"exact"},{"name":"malignant hyperthermia, susceptibility to, type 3","type":"exact"}],"termid":"MONDO:0007940","xrefs":{"Monarch":{"xref_id":"0007940"}}}


id: PR:O13805
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A graves disease carrier protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00827","PANTHER:PTHR24089:SF104","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized mitochondrial carrier C17H9.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17H9.08","secondary_identifiers":["UniProtKB:O13805"],"synonyms":[{"name":"Spom972h-SLC25A16","type":"exact"}],"termid":"PR:O13805"}


id: FYPO:0005183
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the polyubiquitination of one or more specific proteins, or of specific protein sites, does not occur when the cell is exposed to ultraviolet light.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein polyubiquitination during vegetative growth","termid":"FYPO:0005928"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0002494","FYPO:0000002","FYPO:0002274"],"is_obsolete":false,"name":"abolished protein polyubiquitination during cellular response to UV","synonyms":[{"name":"abolished protein polyubiquitination during cellular response to UV during mitotic cell cycle","type":"related"},{"name":"abolished protein polyubiquitination during cellular response to UV during vegetative growth","type":"exact"},{"name":"abolished protein polyubiquitination during cellular response to ultraviolet light","type":"exact"},{"name":"abolished protein polyubiquitinylation during cellular response to UV","type":"related"},{"name":"abolished protein polyubiquitylation during cellular response to UV","type":"exact"},{"name":"protein polyubiquitination abolished during cellular response to UV","type":"exact"}],"termid":"FYPO:0005183"}


id: GO:0086067
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that mediates interactions between an AV node cell and its surroundings that contributes to the process of the AV node cell communicating with a bundle of His cell in cardiac conduction. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell communication involved in cardiac conduction","termid":"GO:0086065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"AV node cell to bundle of His cell communication","synonyms":[{"name":"atrioventricular node cell to bundle of His cell communication","type":"exact"}],"termid":"GO:0086067"}


id: PBO:0068681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 62, pseudogene","termid":"PBO:0068681"}


id: GO:0042358
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of thiamine diphosphate, a derivative of thiamine (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiamine diphosphate metabolic process","termid":"GO:0042357"},{"relation_name":"is_a","term_name":"thiamine-containing compound catabolic process","termid":"GO:0042725"},{"relation_name":"is_a","term_name":"organophosphate catabolic process","termid":"GO:0046434"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006790","GO:0006766","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"thiamine diphosphate catabolic process","synonyms":[{"name":"TPP catabolic process","type":"exact"},{"name":"TPP catabolism","type":"exact"},{"name":"thiamin diphosphate breakdown","type":"exact"},{"name":"thiamin diphosphate catabolic process","type":"exact"},{"name":"thiamin diphosphate catabolism","type":"exact"},{"name":"thiamin diphosphate degradation","type":"exact"},{"name":"thiamin pyrophosphate catabolic process","type":"exact"},{"name":"thiamin pyrophosphate catabolism","type":"exact"},{"name":"thiamine diphosphate catabolism","type":"exact"},{"name":"thiamine pyrophosphate catabolic process","type":"exact"},{"name":"thiamine pyrophosphate catabolism","type":"exact"}],"termid":"GO:0042358"}


id: GO:2000938
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cellotriose catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catabolic process","termid":"GO:0009896"},{"relation_name":"is_a","term_name":"positive regulation of cellotriose metabolic process","termid":"GO:2000935"},{"relation_name":"is_a","term_name":"regulation of cellotriose catabolic process","termid":"GO:2000936"},{"relation_name":"positively_regulates","term_name":"cellotriose catabolic process","termid":"GO:2000894"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cellotriose catabolic process","synonyms":[{"name":"positive regulation of cellotriose catabolism","type":"exact"}],"termid":"GO:2000938"}


id: MONDO:0015678
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Meyer dysplasia of the femoral head is a mild localized form of skeletal dysplasia characterized by delayed, irregular ossification of femoral capital epiphysis.","definition_xrefs":["Orphanet:168621"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dysplasia of head of femur, Meyer type","secondary_identifiers":["MEDGEN:909364","UMLS:C4274970","GARD:20098","SCTID:715861004","icd11.foundation:381445908"],"termid":"MONDO:0015678","xrefs":{"Monarch":{"xref_id":"0015678"}}}


id: GO:0032899
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of a neurotrophin.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"neurotrophin production","termid":"GO:0032898"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of neurotrophin production","termid":"GO:0032899"}


id: MONDO:0009474
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isovaleric acid, inability to smell","secondary_identifiers":["UMLS:C1855714","OMIM:243450","MEDGEN:383751"],"synonyms":[{"name":"isovaleric acid, inability to smell","type":"exact"}],"termid":"MONDO:0009474","xrefs":{"Monarch":{"xref_id":"0009474"}}}


id: MOD:01152
data:
  {"annotated_genes":["SJAG_02766","SJAG_00464"],"annotation_feature_type":"gene","cv_annotations":{"PSI-MOD":[{"annotations":[82428,82462],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00123"}]},"cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with a carboxylic acid group.","definition_xrefs":["Unimod:299"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by chemical process","termid":"MOD:01156"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00464":null,"SJAG_02766":null},"genotype_count":0,"is_obsolete":false,"name":"carboxylated residue","references_by_uniquename":{"PMID:36408920":null},"synonyms":[{"name":"Carboxy","type":"related"},{"name":"Carboxylation","type":"related"}],"termid":"MOD:01152","terms_by_termid":{"MOD:00123":null}}


id: FYPO:0006694
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 4 of histone H3 occurs to a lower extent than normal during G0 phase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization during G0","termid":"FYPO:0003871"},{"relation_name":"is_a","term_name":"abnormal histone methylation","termid":"FYPO:0006870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002274","FYPO:0000002","FYPO:0002494","FYPO:0000641","FYPO:0001985"],"is_obsolete":false,"name":"decreased histone H3-K4 trimethylation during G0","synonyms":[{"name":"decreased histone H3 K4 trimethylation during G0","type":"exact"},{"name":"decreased histone H3-K4 trimethylation during cell quiescence","type":"exact"},{"name":"decreased histone H3-K4 trimethylation during quiescence","type":"exact"},{"name":"decreased histone H3K4 trimethylation during G0","type":"exact"},{"name":"decreased histone H3K4me3 during G0","type":"exact"},{"name":"decreased histone lysine H3 K4 trimethylation during G0","type":"exact"},{"name":"reduced histone H3-K4 trimethylation during G0","type":"exact"}],"termid":"FYPO:0006694"}


id: PBO:0071153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L22 pseudogene 18","termid":"PBO:0071153"}


id: FYPO:0004108
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during G1 phase of the mitotic cell cycle is higher than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level during vegetative growth","termid":"FYPO:0001327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0006551","FYPO:0000002"],"is_obsolete":false,"name":"increased protein level during mitotic G1 phase","synonyms":[{"name":"increased protein accumulation during mitotic G1 phase","type":"related"},{"name":"increased protein level during G1 phase of mitotic cell cycle","type":"related"},{"name":"increased protein level during mitotic G1 phase during vegetative growth","type":"exact"}],"termid":"FYPO:0004108"}


id: PBO:0068982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 226, pseudogene","termid":"PBO:0068982"}


id: GO:0098950
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic early endosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:mah","GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of postsynaptic early endosome membrane (obsolete GO:0098950)","synonyms":[{"name":"intrinsic to postsynaptic early endosome membrane","type":"narrow"}],"termid":"GO:0098950"}


id: FYPO:0005275
data:
  {"alleles_by_uniquename":{"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121181,121221],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004318"},{"annotations":[121479,121480,121481],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000324"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which a cell does not execute a mitotic cell cycle phase transition normally.","definition_xrefs":["GO:0044772","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle process","termid":"FYPO:0002737"},{"relation_name":"is_a","term_name":"abnormal cell cycle phase transition","termid":"FYPO:0005273"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01330":null,"SJAG_01956":null,"SJAG_03351":null,"SJAG_03575":null},"genotype_count":4,"genotypes_by_uniquename":{"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"mad2delta":{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal mitotic cell cycle phase transition","references_by_uniquename":{"PMID:21802294":null,"PMID:23786411":null,"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_03575","SJAG_01956","SJAG_01330","SJAG_03351"],"single_locus_genotype_uniquenames":["apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","mad2delta"],"termid":"FYPO:0005275","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYPO:0000324":null,"FYPO:0004318":null}}


id: PBO:0069534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 804, pseudogene","termid":"PBO:0069534"}


id: GO:0052571
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the immune response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete response to symbiont immune response (obsolete GO:0052571)","synonyms":[{"name":"response to symbiont immune response","type":"exact"}],"termid":"GO:0052571"}


id: PBO:0061035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIP7 pseudogene 1","termid":"PBO:0061035"}


id: PBO:0060275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin heavy chain 9","termid":"PBO:0060275"}


id: PBO:0057846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3158-2","termid":"PBO:0057846"}


id: GO:0060959
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a cardiac neuron over time, from its formation to the mature state.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peripheral nervous system neuron development","termid":"GO:0048935"},{"relation_name":"is_a","term_name":"cardiac cell development","termid":"GO:0055006"},{"relation_name":"part_of","term_name":"cardiac neuron differentiation","termid":"GO:0060945"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac neuron development","synonyms":[{"name":"heart neuron development","type":"exact"}],"termid":"GO:0060959"}


id: GO:0010413
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving xylan, a polymer containing a beta-(1->4)-linked D-xylose backbone decorated with glucuronic acid side units.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xylan metabolic process","termid":"GO:0045491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0008150","GO:0071554","GO:0005975"],"is_obsolete":false,"name":"glucuronoxylan metabolic process","synonyms":[{"name":"glucuronoxylan metabolism","type":"exact"}],"termid":"GO:0010413"}


id: PBO:0040792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BFSP2 antisense RNA 1","termid":"PBO:0040792"}


id: GO:0006713
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid catabolic process","termid":"GO:0006706"},{"relation_name":"is_a","term_name":"glucocorticoid metabolic process","termid":"GO:0008211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"glucocorticoid catabolic process","synonyms":[{"name":"glucocorticoid breakdown","type":"exact"},{"name":"glucocorticoid catabolism","type":"exact"},{"name":"glucocorticoid degradation","type":"exact"}],"termid":"GO:0006713"}


id: GO:0001016
data:
  {"annotated_genes":["SJAG_05339","SJAG_00421","SJAG_03120","SJAG_03354"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90048],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000992"},{"annotations":[71560],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001002"},{"annotations":[71561],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001003"},{"annotations":[79342,97486],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001006"}]},"cv_name":"molecular_function","definition":"Binding to a DNA region that controls the transcription of a gene by RNA polymerase III. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.","definition_xrefs":["GOC:vw","PMID:12381659","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription cis-regulatory region binding","termid":"GO:0000976"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00421":null,"SJAG_03120":null,"SJAG_03354":null,"SJAG_05339":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0000976"}],"interesting_parent_ids":["GO:0005488","GO:0003677","GO:0003674","GO:0000976"],"is_obsolete":false,"name":"RNA polymerase III transcription regulatory region sequence-specific DNA binding","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"RNA polymerase III regulatory region DNA binding","type":"related"}],"termid":"GO:0001016","terms_by_termid":{"GO:0000992":null,"GO:0001002":null,"GO:0001003":null,"GO:0001006":null}}


id: PBO:0062186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily N member 5","termid":"PBO:0062186"}


id: GO:0018729
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + propanoate = acetate + propanoyl-CoA.","definition_xrefs":["EC:2.8.3.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-transferase activity","termid":"GO:0008410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016782"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016782","GO:0003674"],"is_obsolete":false,"name":"propionate CoA-transferase activity","secondary_identifiers":["RHEA:23520","UM-BBD_reactionID:r0087","MetaCyc:PROPIONATE-COA-TRANSFERASE-RXN"],"synonyms":[{"name":"acetyl-CoA:propanoate CoA-transferase activity","type":"related"},{"name":"propionate coenzyme A-transferase activity","type":"related"},{"name":"propionate-CoA:lactoyl-CoA transferase activity","type":"related"},{"name":"propionyl CoA:acetate CoA transferase activity","type":"related"},{"name":"propionyl-CoA transferase activity","type":"related"}],"termid":"GO:0018729"}


id: PBO:0091584
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear Elongation and Deformation","termid":"PBO:0091584"}


id: PBO:0003477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translation termination factor Rrf1","termid":"PBO:0003477"}


id: GO:1900146
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of a nodal signaling pathway, where the nodal signaling pathway is involved in determination of left/right asymmetry.","definition_xrefs":["GOC:signaling","GOC:vk","GOC:TermGenie","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of nodal signaling pathway involved in determination of left/right asymmetry (obsolete GO:1900146)","synonyms":[{"name":"down regulation of nodal signaling pathway involved in determination of left/right asymmetry","type":"exact"},{"name":"down-regulation of nodal signaling pathway involved in determination of left/right asymmetry","type":"exact"},{"name":"downregulation of nodal signaling pathway involved in determination of left/right asymmetry","type":"exact"},{"name":"inhibition of nodal signaling pathway involved in determination of left/right asymmetry","type":"narrow"},{"name":"negative regulation of nodal signalling pathway involved in determination of left/right asymmetry","type":"exact"}],"termid":"GO:1900146"}


id: PBO:0027010
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_mononucleate_aseptate_vegetative_cell_with_cell_cycle_arrest_in_mitotic_G2_phase","termid":"PBO:0027010"}


id: PBO:0083562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps verified gene VID21/YDR359C","termid":"PBO:0083562"}


id: SO:0001787
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that causes a change at the 5th base pair after the start of the intron in the orientation of the transcript.","definition_xrefs":["EBI:gr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"splice_site_variant","termid":"SO:0001629"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splice_donor_5th_base_variant","synonyms":[{"name":"splice donor 5th base variant","type":"exact"}],"termid":"SO:0001787"}


id: PBO:0016896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Kri1 (predicted)","termid":"PBO:0016896"}


id: GO:0072427
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which information about damage to DNA is received and converted into a molecular signal, contributing to an intra-S DNA damage checkpoint.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of DNA damage stimulus involved in intra-S DNA damage checkpoint (obsolete GO:0072427)","synonyms":[{"name":"intra-S DNA damage checkpoint sensor mechanism","type":"related"},{"name":"intra-S DNA damage checkpoint sensor process","type":"related"},{"name":"sensing involved in intra-S DNA damage checkpoint","type":"related"}],"termid":"GO:0072427"}


id: PBO:0028027
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_during_meiosis_II","termid":"PBO:0028027"}


id: PBO:0083666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endoplasmic reticulum membrane protein that binds and inhibits Ras2p; binds to and inhibits GTP-bound Ras2p at the endoplasmic reticulum (ER); component of the GPI-GnT complex which catalyzes the first step in GPI-anchor biosynthesis; probable homolog of mammalian PIG-Y protein","termid":"PBO:0083666"}


id: FYPO:0003695
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain fewer free small ribosomal subunits in the cytosol than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of macromolecular complex during vegetative growth","termid":"FYPO:0003684"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased cytosolic small ribosomal subunit level","synonyms":[{"name":"cytosolic small ribosomal subunit present at decreased level","type":"exact"},{"name":"decreased 40S ribosomal subunit level","type":"exact"},{"name":"decreased cytosolic small ribosomal subunit level during mitotic cell cycle","type":"related"},{"name":"decreased cytosolic small ribosomal subunit level during vegetative growth","type":"exact"},{"name":"decreased level of cytosolic small ribosomal subunits","type":"related"},{"name":"decreased small ribosomal subunit level","type":"broad"},{"name":"reduced cytosolic small ribosomal subunit level","type":"exact"}],"termid":"FYPO:0003695"}


id: GO:0018992
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The determination of sex and sexual phenotype in an organism's germ line.","definition_xrefs":["GOC:ems"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sex determination","termid":"GO:0007530"},{"relation_name":"part_of","term_name":"multicellular organism development","termid":"GO:0007275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"germ-line sex determination","termid":"GO:0018992"}


id: PBO:0054758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2169","termid":"PBO:0054758"}


id: MONDO:0001816
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"scleritis","termid":"MONDO:0001718"},{"relation_name":"is_a","term_name":"keratitis","termid":"MONDO:0003085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"scleroperikeratitis","secondary_identifiers":["SCTID:42574005","DOID:13861","MEDGEN:509930","UMLS:C0155355","ICD9:379.05"],"synonyms":[{"name":"scleritis with corneal involvement","type":"exact"}],"termid":"MONDO:0001816","xrefs":{"Monarch":{"xref_id":"0001816"}}}


id: MONDO:0019462
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Splenic marginal zone lymphoma is a rare, indolent B-cell non-Hodgkin lymphoma characterized by abnormal clonal proliferation of mature B-lymphocytes with involvement in the spleen, bone marrow and, frequently, the blood. It usually presents with splenomegaly, lymphocytosis, anemia and/or thrombocytopenia. Hepatitis C virus and autoimmune manifestations, such as autoimmune hemolytic anemia and autoimmune thrombocytopenia, could be associated.","definition_xrefs":["Orphanet:86854"],"direct_ancestors":[{"relation_name":"is_a","term_name":"marginal zone lymphoma","termid":"MONDO:0017604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"splenic marginal zone lymphoma","secondary_identifiers":["EFO:1000550","MEDGEN:138108","UMLS:C0349632","GARD:19072","ONCOTREE:SMZL","MedDRA:10062113","SCTID:763666008","ICDO:9689/3","icd11.foundation:1002343712","NCIT:C4663","DOID:0050750"],"synonyms":[{"name":"SLVL","type":"exact"},{"name":"SMZL","type":"exact"},{"name":"marginal zone lymphoma of spleen","type":"exact"},{"name":"marginal zone lymphoma of the spleen","type":"exact"},{"name":"splenic lymphoma with circulating villous lymphocytes","type":"exact"},{"name":"splenic marginal zone B-cell lymphoma","type":"exact"},{"name":"splenic marginal zone B-cell lymphoma with villous lymphocytes","type":"exact"},{"name":"splenic marginal zone lymphoma","type":"exact"},{"name":"splenic marginal zone lymphoma with villous lymphocytes","type":"exact"}],"termid":"MONDO:0019462","xrefs":{"Monarch":{"xref_id":"0019462"}}}


id: MONDO:0012286
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked myopathy with excessive autophagy","termid":"MONDO:0010684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"myopathy, autophagic vacuolar, infantile-onset","secondary_identifiers":["OMIM:609500","UMLS:C2931230","MEDGEN:419364"],"synonyms":[{"name":"myopathy, autophagic vacuolar, infantile-onset","type":"exact"}],"termid":"MONDO:0012286","xrefs":{"Monarch":{"xref_id":"0012286"}}}


id: MONDO:0019244
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete glycogen storage disease (obsolete MONDO:0019244)","termid":"MONDO:0019244","xrefs":{"Monarch":{"xref_id":"0019244"}}}


id: GO:0002193
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of the intracellular domain of Notch1 (ICN1), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-1 (MAML1); the complex is involved in transcriptional activation in response to Notch-mediated signaling.","definition_xrefs":["PMID:16510869","CORUM:2949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"MAML1-RBP-Jkappa- ICN1 complex","synonyms":[{"name":"MAML1-CSL-ICN1","type":"exact"},{"name":"MAML1-CSL-Notch1 complex","type":"exact"},{"name":"MAML1-RBP-Jkappa-Notch1 complex","type":"exact"}],"termid":"GO:0002193"}


id: PBO:0040167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ASMTL antisense RNA 1","termid":"PBO:0040167"}


id: GO:0036378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Conversion of vitamin D3 from its largely inactive form (calciol, also called cholecalciferol) into a hormonally active form (calcitriol). Conversion requires 25-hydroxylation of calciol in the liver to form calcidiol, and subsequent 1,alpha-hydroxylation of calcidiol in the kidney to form calcitriol.","definition_xrefs":["GOC:BHF","GOC:rl","PMID:17426122","PMID:20511049"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin D biosynthetic process","termid":"GO:0042368"},{"relation_name":"is_a","term_name":"polyol biosynthetic process","termid":"GO:0046173"},{"relation_name":"is_a","term_name":"vitamin D3 metabolic process","termid":"GO:0070640"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006766","GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"calcitriol biosynthetic process from calciol","synonyms":[{"name":"1alpha,25(OH)2D3 biosynthesis","type":"broad"},{"name":"1alpha,25-dihydroxycholecalciferol biosynthesis","type":"broad"},{"name":"1alpha,25-dihydroxyvitamin D3 biosynthesis","type":"broad"},{"name":"calcitriol biosynthesis from calciol","type":"exact"},{"name":"vitamin D3 activation","type":"exact"}],"termid":"GO:0036378"}


id: PBO:0066830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 129","termid":"PBO:0066830"}


id: PBO:0048231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G antigen 2B","termid":"PBO:0048231"}


id: PBO:0080285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 48 pseudogene","termid":"PBO:0080285"}


id: PBO:0027282
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_intragenic_meiotic_recombination","termid":"PBO:0027282"}


id: PBO:0044665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dicarbonyl and L-xylulose reductase","termid":"PBO:0044665"}


id: PBO:0054628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2033","termid":"PBO:0054628"}


id: MONDO:0044284
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. The Gerbich blood group system contains 6 high-prevalence and 5 low-prevalence antigens that are expressed on glycophorin C (GPC), glycophorin D (GPD), or both GPC and GPD. GPC and GPD, which contribute stability to the red blood cell membrane, are encoded by the same gene, GYPC, through the use of alternative translational start sites. Deficiency of GPC and GPD is associated with hereditary elliptocytosis, and Gerbich antigens act as receptors for the malarial parasite Plasmodium falciparum (see OMIM:611162). The Gerbich antibodies anti-Ge2 and anti-Ge3 have caused hemolytic transfusion reactions, and anti-Ge3 has produced hemolytic disease of the fetus and newborn (review by {12:Walker and Reid, 2010}).","definition_xrefs":["OMIM:616089"],"gene_count":0,"genotype_count":0,"name":"obsolete blood group, gerbich system (obsolete MONDO:0044284)","synonyms":[{"name":"GE","type":"related"},{"name":"Gerbich blood Group system","type":"related"},{"name":"blood group, Gerbich","type":"exact"},{"name":"blood group, Gerbich system","type":"related"}],"termid":"MONDO:0044284","xrefs":{"Monarch":{"xref_id":"0044284"}}}


id: PBO:0078165
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta locus","termid":"PBO:0078165"}


id: FYPO:0001215
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the assembly of a protein complex at the cellular level is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"normal protein-containing complex assembly","termid":"FYPO:0006839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal protein complex assembly during vegetative growth","synonyms":[{"name":"normal cellular protein complex assembly during vegetative growth","type":"exact"},{"name":"normal protein complex assembly during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001215"}


id: PR:P78804
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An NADP-specific glutamate dehydrogenase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04676","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADP-specific glutamate dehydrogenase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC622.12c","secondary_identifiers":["UniProtKB:P78804"],"synonyms":[{"name":"NADP-GDH (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"NADP-dependent glutamate dehydrogenase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-gdhA","type":"exact"}],"termid":"PR:P78804"}


id: MONDO:1012011
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"renal amyloidosis, non-human animal","termid":"MONDO:1011903"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"renal amyloidosis, cattle","secondary_identifiers":["OMIA:000040-9913"],"termid":"MONDO:1012011","xrefs":{"Monarch":{"xref_id":"1012011"}}}


id: MONDO:0031084
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"amelogenesis imperfecta","termid":"MONDO:0019507"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amelogenesis imperfecta, IIa 1K","secondary_identifiers":["OMIM:620104","DOID:0060945","UMLS:C5774246","MEDGEN:1824019"],"synonyms":[{"name":"AI1K","type":"exact"},{"name":"amelogenesis imperfecta, IIa 1K","type":"exact"},{"name":"amelogenesis imperfecta, hypoplastic IIa 1K","type":"exact"}],"termid":"MONDO:0031084","xrefs":{"Monarch":{"xref_id":"0031084"}}}


id: PBO:0081389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 229","termid":"PBO:0081389"}


id: MONDO:0044323
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Rahman syndrome is characterized by mild to severe intellectual disability associated with variable somatic overgrowth manifest as increased birth length, height, weight, and/or head circumference. The overgrowth is apparent in infancy and may lessen with time or persist. The phenotype is highly variable; some individuals may have other minor anomalies, including dysmorphic facial features, strabismus, or camptodactyly. The disorder is thought to result from a defect in epigenetic regulation (summary by {1:Tatton-Brown et al., 2017}).","definition_xrefs":["OMIM:617537"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rahman syndrome","secondary_identifiers":["UMLS:C4479637","GARD:13422","Orphanet:642763","MEDGEN:1388282"],"synonyms":[{"name":"RMNS","type":"related"},{"name":"Rahman syndrome","type":"exact"},{"name":"autosomal dominant intellectual disability-craniofacial dysmorphism-macrocephaly-hypotonia syndrome due to H1-4 mutation","type":"exact"}],"termid":"MONDO:0044323","xrefs":{"Monarch":{"xref_id":"0044323"}}}


id: MONDO:0004462
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A mucinous cystic neoplasm that arises from the extrahepatic bile ducts.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bile duct cystadenoma","termid":"MONDO:0003420"},{"relation_name":"is_a","term_name":"extrahepatic bile duct adenoma","termid":"MONDO:0003445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"extrahepatic bile duct cystadenoma","secondary_identifiers":["DOID:8105","NCIT:C5851","MEDGEN:272603","UMLS:C1333504"],"synonyms":[{"name":"cystadenoma of extrahepatic bile duct","type":"exact"},{"name":"cystadenoma of the extrahepatic bile duct","type":"exact"},{"name":"extrahepatic bile duct cystadenoma","type":"exact"},{"name":"extrahepatic bile duct mucinous cystic neoplasm","type":"exact"}],"termid":"MONDO:0004462","xrefs":{"Monarch":{"xref_id":"0004462"}}}


id: PBO:0033817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional activator Sak1","termid":"PBO:0033817"}


id: _global:directly_regulated_by
data:
  {"annotation_feature_type":"gene","cv_name":"external","direct_ancestors":[{"relation_name":"is_a","term_name":"regulated_by","termid":"_global:regulated_by"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"directly_regulated_by","secondary_identifiers":["RO:0002022"],"termid":"_global:directly_regulated_by"}


id: PBO:0065380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pregnancy specific beta-1-glycoprotein 8","termid":"PBO:0065380"}


id: MONDO:0010357
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete MRX78 (obsolete MONDO:0010357)","secondary_identifiers":["OMIM:300551"],"termid":"MONDO:0010357","xrefs":{"Monarch":{"xref_id":"0010357"}}}


id: PBO:0003851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ACN9 family protein (predicted)","termid":"PBO:0003851"}


id: PBO:0029668
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_cable_morphology","termid":"PBO:0029668"}


id: PBO:0011424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial pyruvate transmembrane transporter subunit Mpc2","termid":"PBO:0011424"}


id: PBO:0003087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication factor A subunit Ssb1","termid":"PBO:0003087"}


id: PBO:0057593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 922","termid":"PBO:0057593"}


id: GO:0052344
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a symbiont activates, maintains or increases the frequency, rate or extent of the production of phytoalexins as part of the defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by symbiont of host phytoalexin production (obsolete GO:0052344)","synonyms":[{"name":"activation by symbiont of host phytoalexin production","type":"narrow"},{"name":"positive regulation by organism of phytoalexin production in other organism involved in symbiotic interaction","type":"broad"},{"name":"stimulation by symbiont of host phytoalexin production","type":"narrow"},{"name":"up regulation by symbiont of host phytoalexin production","type":"exact"},{"name":"up-regulation by symbiont of host phytoalexin production","type":"exact"},{"name":"upregulation by symbiont of host phytoalexin production","type":"exact"}],"termid":"GO:0052344"}


id: GO:0036219
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GTP + H2O = GMP + H+ + diphosphate.","definition_xrefs":["GOC:dgf","RHEA:29391","PMID:22531138"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside triphosphate diphosphatase activity","termid":"GO:0047429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0047429"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0047429","GO:0003824"],"is_obsolete":false,"name":"GTP diphosphatase activity","secondary_identifiers":["KEGG_REACTION:R00426"],"synonyms":[{"name":"GTP diphosphohydrolase (diphosphate-forming); guanosine 5'-triphosphate pyrophosphohydrolase","type":"exact"},{"name":"GTP diphosphohydrolase activity","type":"exact"},{"name":"GTP pyrophosphatase activity","type":"exact"}],"termid":"GO:0036219"}


id: GO:0032952
data:
  {"annotated_genes":["SJAG_04659","SJAG_04668","SJAG_00610","SJAG_01787","SJAG_04666","SJAG_04771","SJAG_01255","SJAG_03705","SJAG_04462"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94302,89369],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140748"},{"annotations":[120054,107867,92643,69405,94286,107293,119921],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090334"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving (1->3)-beta-D-glucans.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of beta-glucan metabolic process","termid":"GO:0032950"},{"relation_name":"regulates","term_name":"(1->3)-beta-D-glucan metabolic process","termid":"GO:0006074"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00610":null,"SJAG_01255":null,"SJAG_01787":null,"SJAG_03705":null,"SJAG_04462":null,"SJAG_04659":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"regulation of (1->3)-beta-D-glucan metabolic process","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"regulation of (1->3)-beta-D-glucan metabolism","type":"exact"},{"name":"regulation of 1,3-beta-D-glucan metabolic process","type":"exact"},{"name":"regulation of 1,3-beta-glucan metabolic process","type":"broad"},{"name":"regulation of 1,3-beta-glucan metabolism","type":"exact"}],"termid":"GO:0032952","terms_by_termid":{"GO:0090334":null,"GO:0140748":null}}


id: PBO:0042528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 4 pseudogene 1","termid":"PBO:0042528"}


id: GO:0010218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.","definition_xrefs":["GOC:tb","GOC:mtg_far_red"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to red or far red light","termid":"GO:0009639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to far red light","synonyms":[{"name":"response to far red light stimulus","type":"exact"}],"termid":"GO:0010218"}


id: PBO:0005483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RSC complex subunit Rsc7","termid":"PBO:0005483"}


id: MONDO:0007097
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"corneal dystrophy","termid":"MONDO:0018102"},{"relation_name":"is_a","term_name":"hereditary amyloidosis","termid":"MONDO:0018634"},{"relation_name":"is_a","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0021179"}],"interesting_parent_ids":["MONDO:0021179","MONDO:0005244","MONDO:0005066","MONDO:0005328"],"is_obsolete":false,"name":"Finnish type amyloidosis","secondary_identifiers":["MEDGEN:301243","MESH:C537459","UMLS:C1622345","DOID:0050637","ICD9:277.39","Orphanet:85448","NANDO:1201063","SCTID:419398009","GARD:2339","OMIM:105120"],"synonyms":[{"name":"AGel amyloidosis","type":"related"},{"name":"amyloid cranial neuropathy with lattice corneal dystrophy","type":"related"},{"name":"amyloidosis 5","type":"related"},{"name":"amyloidosis V","type":"related"},{"name":"amyloidosis due to mutant gelsolin","type":"related"},{"name":"amyloidosis, Finnish type","type":"related"},{"name":"amyloidosis, MERETOJA type","type":"exact"},{"name":"amyloidosis, Meretoja type","type":"related"},{"name":"cerebral amyloid angiopathy, Gsn-related","type":"related"},{"name":"corneal dystrophy, lattice type 2","type":"related"},{"name":"familial amyloid polyneuropathy type IV","type":"exact"},{"name":"familial amyloidosis, Finnish type","type":"exact"},{"name":"gelsolin amyloidosis","type":"exact"},{"name":"hereditary amyloidosis, Finnish type","type":"exact"},{"name":"hereditary gelsolin amyloidosis","type":"related"},{"name":"lattice corneal dystrophy type II Finnish","type":"related"},{"name":"lattice corneal dystrophy, type 2","type":"related"},{"name":"meretoja syndrome","type":"exact"},{"name":"meretoja type amyloidosis","type":"related"}],"termid":"MONDO:0007097","xrefs":{"Monarch":{"xref_id":"0007097"}}}


id: FYPO:0005483
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of an inositol phosphate phosphatase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased phosphatase activity","termid":"FYPO:0004415"},{"relation_name":"is_a","term_name":"abnormal inositol phosphate phosphatase activity","termid":"FYPO:0005482"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000661","FYPO:0000652","FYPO:0000707","FYPO:0001985"],"is_obsolete":false,"name":"increased inositol phosphate phosphatase activity","termid":"FYPO:0005483"}


id: PBO:0111314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial outer membrane protein, TspO","termid":"PBO:0111314"}


id: PBO:0073688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIX homeobox 1","termid":"PBO:0073688"}


id: FYPO:0003344
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed when a cell population is in stationary phase in which a cell is elongated, has two or more nuclei and more than one septum, and the septa not grouped together, but are located so as to form separate compartments with a single nucleus in each.","definition_xrefs":["PomBase:vw","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated multinucleate multiseptate cell, single septa between nuclei","termid":"FYPO:0003343"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0000631","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0000032"],"is_obsolete":false,"name":"elongated multinucleate multiseptate cell, single septa between nuclei, during stationary phase","synonyms":[{"name":"elongated multinucleate multiseptate cell, single septa between nuclei during stationary phase","type":"exact"},{"name":"elongated multinucleate multiseptate cell, single septa between nuclei, during stationary phase during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003344"}


id: GO:0102639
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 13-desoxypaxilline + NADPH + O2 + H+ = paspalicine + NADP + 2 H2O.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete paspalicine synthase activity (obsolete GO:0102639)","termid":"GO:0102639"}


id: GO:0061968
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The organization process that preserves the asymmetry in an organism's body plan or part of an organism with respect to the left and right halves.","definition_xrefs":["PMID:18629866","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pattern specification process","termid":"GO:0007389"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of left/right asymmetry","termid":"GO:0061968"}


id: PBO:0060105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND6 pseudogene 6","termid":"PBO:0060105"}


id: MONDO:0009383
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary hyperbilirubinemia","termid":"MONDO:0002408"},{"relation_name":"is_a","term_name":"liver disorder","termid":"MONDO:0005154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"transient familial neonatal hyperbilirubinemia","secondary_identifiers":["GARD:2791","Orphanet:2312","MEDGEN:75718","UMLS:C0270210","MESH:C562692","OMIM:237900"],"synonyms":[{"name":"HBLRTFN","type":"related"},{"name":"Lucey-Driscoll syndrome","type":"exact"},{"name":"breast milk jaundice","type":"related"},{"name":"hyperbilirubinemia transient familial neonatal","type":"related"},{"name":"hyperbilirubinemia, familial transient neonatal","type":"exact"},{"name":"hyperbilirubinemia, transient familial neonatal","type":"related"},{"name":"transient familial hyperbilirubinemia","type":"related"}],"termid":"MONDO:0009383","xrefs":{"Monarch":{"xref_id":"0009383"}}}


id: GO:0093001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a storage polysaccharide into pyruvate through a glucose-1-phosphate intermediate, with the concomitant production of a small amount of ATP and the reduction of NAD to NADH.","definition_xrefs":["GOC:glycolysis","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide catabolic process","termid":"GO:0000272"},{"relation_name":"is_a","term_name":"glycolytic process through glucose-1-phosphate","termid":"GO:0061622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281","GO:0005975","GO:0006091"],"is_obsolete":false,"name":"glycolysis from storage polysaccharide through glucose-1-phosphate","termid":"GO:0093001"}


id: PBO:0017706
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"not functionally complemented by S. cerevisiae BET2","termid":"PBO:0017706"}


id: PBO:0003420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Swr1 complex complex subunit Swc2","termid":"PBO:0003420"}


id: PBO:0065555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostaglandin E synthase","termid":"PBO:0065555"}


id: MONDO:0700059
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Actinobacillus infectious disease that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial infectious disease, non-human animal","termid":"MONDO:0700050"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Actinobacillus infectious disease, non-human animal","termid":"MONDO:0700059","xrefs":{"Monarch":{"xref_id":"0700059"}}}


id: PBO:0085921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; member of the seripauperin multigene family encoded mainly in subtelomeric regions; identical to Pau6p","termid":"PBO:0085921"}


id: GO:0102771
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an N-(1,2-saturated acyl)sphinganine + 2 Fe(II)-[cytochrome b5] + 2 H+ + O2 = an N-[(2'R)-hydroxyacyl]sphinganine + 2 Fe(III)-[cytochrome b5] + H2O.","definition_xrefs":["RHEA:46512"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid 2-hydroxylase activity","termid":"GO:0080132"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"dihydroceramide fatty acyl 2-hydroxylase activity","secondary_identifiers":["EC:1.14.18.7","MetaCyc:RXN-7796"],"synonyms":[{"name":"plant sphingolipid fatty acid 2-hydroxylase actitivy","type":"exact"},{"name":"sphingolipid very long chain fatty acid alpha-hydroxylase activity","type":"related"}],"termid":"GO:0102771"}


id: GO:0000452
data:
  {"annotated_genes":["SJAG_02377","SJAG_03410","SJAG_00943","SJAG_02350","SJAG_00744"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[61617,96012,100709,112175,113333],"is_not":false,"summary":null,"term":"GO:0000452"}]},"cv_name":"biological_process","definition":"The posttranscriptional addition of methyl groups to the 2'-oxygen atom of nucleotide residues in an rRNA molecule during ribosome biogenesis using a snoRNA guide that targets the position of methylation.","definition_xrefs":["GOC:curators","ISBN:1555811337"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA 2'-O-methylation","termid":"GO:0000451"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00744":null,"SJAG_00943":null,"SJAG_02350":null,"SJAG_02377":null,"SJAG_03410":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0044085","GO:0042254"],"is_obsolete":false,"name":"snoRNA guided rRNA 2'-O-methylation","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"snoRNA guided rRNA 2'-O-ribose methylation","type":"related"}],"termid":"GO:0000452","terms_by_termid":{"GO:0000452":null}}


id: MONDO:0009842
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autoinflammatory disease with defective neutrophil function caused by a homozygous Arg219His mutation in the transcription factor C/EBPε.","definition_xrefs":["PMID:31201888"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoinflammatory syndrome","termid":"MONDO:0019751"},{"relation_name":"is_a","term_name":"hereditary disorder of connective tissue","termid":"MONDO:0023603"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pelger-Huet-like anomaly and episodic fever with abdominal pain","secondary_identifiers":["UMLS:C1850054","MEDGEN:376692","OMIM:260570","MESH:C564899"],"synonyms":[{"name":"Pelger-Huet-like anomaly and episodic fever with abdominal pain","type":"exact"},{"name":"immunodeficiency 108 with autoinflammation","type":"exact"}],"termid":"MONDO:0009842","xrefs":{"Monarch":{"xref_id":"0009842"}}}


id: MONDO:1012969
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hearing loss disorder that occurs in non-human animals","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing disorder, non-human animal","termid":"MONDO:1011318"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hearing loss disorder, non-human animal","termid":"MONDO:1012969","xrefs":{"Monarch":{"xref_id":"1012969"}}}


id: GO:0035965
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Remodeling the acyl chains of premature (de novo synthesized) cardiolipin (1,3-bis(3-phosphatidyl)glycerol), through sequential deacylation and re-acylation reactions, to generate mature cardiolipin containing high-levels of unsaturated fatty acids.","definition_xrefs":["PMID:19244244","GOC:bf","GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiolipin metabolic process","termid":"GO:0032048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"cardiolipin acyl-chain remodeling","secondary_identifiers":["Reactome:R-HSA-1482798"],"synonyms":[{"name":"cardiolipin acyl-chain remodelling","type":"exact"},{"name":"cardiolipin maturation","type":"broad"},{"name":"diphosphatidylglycerol remodeling","type":"related"}],"termid":"GO:0035965"}


id: FYPO:0008210
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) at one or more promoter regions does not occur.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished chromatin binding","termid":"FYPO:0001093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"abolished chromatin binding at promoter region","termid":"FYPO:0008210"}


id: GO:1903522
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of blood circulation.","definition_xrefs":["GOC:mr","PMID:10659969","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of system process","termid":"GO:0044057"},{"relation_name":"regulates","term_name":"blood circulation","termid":"GO:0008015"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of blood circulation","synonyms":[{"name":"regulation of hemolymph circulation","type":"related"}],"termid":"GO:1903522"}


id: PBO:0070874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L15 pseudogene 5","termid":"PBO:0070874"}


id: PBO:0042945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil-helix-coiled-coil-helix domain containing 1","termid":"PBO:0042945"}


id: PBO:0034233
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-simultaneous_with","termid":"PBO:0034233"}


id: PBO:0072607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal L24 domain containing 1 pseudogene 2","termid":"PBO:0072607"}


id: MONDO:0010116
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"thoracic malformation","termid":"MONDO:0015929"},{"relation_name":"is_a","term_name":"short rib dysplasia","termid":"MONDO:0019691"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thoracomelic dysplasia","secondary_identifiers":["MESH:C564773","OMIM:273740","Orphanet:1803","UMLS:C1848863","GARD:10612","MEDGEN:336441","icd11.foundation:1284518024"],"synonyms":[{"name":"'thoraco-limb' dysplasia","type":"related"},{"name":"Rivera-Perez-Salas syndrome","type":"exact"},{"name":"thoraco-limb dysplasia","type":"related"},{"name":"thoracolimb dysplasia, Rivera type","type":"exact"},{"name":"thoracomelic dysplasia","type":"exact"}],"termid":"MONDO:0010116","xrefs":{"Monarch":{"xref_id":"0010116"}}}


id: PBO:0071238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 79","termid":"PBO:0071238"}


id: GO:1900959
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of 17-methylnonadec-1-ene metabolic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of olefin metabolic process","termid":"GO:1900908"},{"relation_name":"regulates","term_name":"17-methylnonadec-1-ene metabolic process","termid":"GO:1900882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of 17-methylnonadec-1-ene metabolic process","synonyms":[{"name":"regulation of 17-methylnonadec-1-ene metabolism","type":"exact"}],"termid":"GO:1900959"}


id: PBO:0004492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidate cytidylyltransferase (predicted)","termid":"PBO:0004492"}


id: FYPO:0004501
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the rate and occurrence of DNA polymerase processivity factor activity are normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal molecular function","termid":"FYPO:0000706"},{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000652"],"is_obsolete":false,"name":"normal DNA polymerase processivity factor activity","termid":"FYPO:0004501"}


id: GO:0034318
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of an acyl group to an oxygen atom on an alcohol acceptor molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016746","GO:0003674"],"is_obsolete":false,"name":"alcohol O-acyltransferase activity","synonyms":[{"name":"AEATase activity","type":"narrow"},{"name":"acyl-CoA:alcohol O-acyltransferase activity","type":"exact"},{"name":"acyl-CoA:ethanol O-acyltransferase","type":"narrow"},{"name":"acyl-coenzymeA:alcohol O-acyltransferase activity","type":"exact"},{"name":"acyl-coenzymeA:ethanol O-acyltransferase activity","type":"narrow"},{"name":"alcohol acyltransferase activity","type":"exact"}],"termid":"GO:0034318"}


id: PBO:0048028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibrous sheath CABYR binding protein","termid":"PBO:0048028"}


id: PATO:0002130
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues to a large extend.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplastic, invasive","termid":"PATO:0002129"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neoplastic, deeply invasive","termid":"PATO:0002130"}


id: GO:0052814
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a medium-chain fatty aldehyde + H2O + NAD+ = a medium chain fatty acid + 2 H+ + NADH.","definition_xrefs":["RHEA:69763"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty aldehyde dehydrogenase (NAD+) activity","termid":"GO:0102673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"medium-chain fatty aldehyde dehydrogenase (NAD+) activity","synonyms":[{"name":"medium-chain aliphatic aldehyde dehydrogenase activity","type":"related"},{"name":"medium-chain fatty aldehyde dehydrogenase activity","type":"related"},{"name":"medium-chain-aldehyde dehydrogenase activity","type":"exact"},{"name":"medium-chain-aldehyde:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0052814"}


id: PBO:0011164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CORVET complex subunit, GTPase regulator Vps3 (predicted)","termid":"PBO:0011164"}


id: MONDO:1012564
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"growth and respiratory lethal syndrome, non-human animal","termid":"MONDO:1011935"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth and respiratory lethal syndrome, cattle","secondary_identifiers":["OMIA:002560-9913"],"termid":"MONDO:1012564","xrefs":{"Monarch":{"xref_id":"1012564"}}}


id: PBO:0069222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 477, pseudogene","termid":"PBO:0069222"}


id: PBO:0071177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 18","termid":"PBO:0071177"}


id: GO:1901126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of candicidin.","definition_xrefs":["GOC:TermGenie","GOC:yaf","UniPathway:UPA00101"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"candicidin metabolic process","termid":"GO:1901125"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"candicidin catabolic process","synonyms":[{"name":"candicidin breakdown","type":"exact"},{"name":"candicidin catabolism","type":"exact"},{"name":"candicidin degradation","type":"exact"}],"termid":"GO:1901126"}


id: GO:0032748
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-24 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-24 production","termid":"GO:0032668"},{"relation_name":"positively_regulates","term_name":"interleukin-24 production","termid":"GO:0032628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of interleukin-24 production","secondary_identifiers":["GO:0045536"],"synonyms":[{"name":"activation of interleukin-24 production","type":"narrow"},{"name":"positive regulation of IL-24 production","type":"exact"},{"name":"positive regulation of interleukin-24 biosynthetic process","type":"narrow"},{"name":"stimulation of interleukin-24 production","type":"narrow"},{"name":"up regulation of interleukin-24 production","type":"exact"},{"name":"up-regulation of interleukin-24 production","type":"exact"},{"name":"upregulation of interleukin-24 production","type":"exact"}],"termid":"GO:0032748"}


id: PBO:0060333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYO3B antisense RNA 1","termid":"PBO:0060333"}


id: PBO:0087077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L38; homologous to mammalian ribosomal protein L38, no bacterial homolog","termid":"PBO:0087077"}


id: FYPO:0001548
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell differs from normal during a cellular response to hydrogen peroxide. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered protein level during vegetative growth","termid":"FYPO:0001325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0006551","FYPO:0001320"],"is_obsolete":false,"name":"altered protein level during cellular response to hydrogen peroxide","synonyms":[{"name":"abnormal protein level during cellular response to hydrogen peroxide","type":"exact"},{"name":"altered cellular protein level during cellular response to hydrogen peroxide during vegetative growth","type":"exact"},{"name":"altered protein level during cellular response to H2O2","type":"exact"},{"name":"altered protein level during cellular response to hydrogen peroxide during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001548"}


id: PR:Q09181
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent RNA helicase DDX6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03601"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase ste13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC776.09","secondary_identifiers":["UniProtKB:Q09181"],"synonyms":[{"name":"Spom972h-DDX6","type":"exact"}],"termid":"PR:Q09181"}


id: PBO:0086164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for rRNA maturation and ribosomal subunit biogenesis; required for 18S rRNA maturation; also required for small ribosomal subunit biogenesis; cosediments with pre-ribosomal particles; mutation decreases efficiency of +1 Ty1 frameshifting and transposition, and affects budding pattern","termid":"PBO:0086164"}


id: GO:0034588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of piRNAs, Piwi-associated RNAs, a class of 24- to 30-nucleotide RNA derived from repeat or complex DNA sequence elements and processed by a Dicer-independent mechanism.","definition_xrefs":["GOC:kmv"],"gene_count":0,"genotype_count":0,"name":"obsolete piRNA catabolic process (obsolete GO:0034588)","synonyms":[{"name":"Piwi-associated RNA catabolic process","type":"exact"},{"name":"piRNA breakdown","type":"exact"},{"name":"piRNA catabolism","type":"exact"},{"name":"piRNA degradation","type":"exact"}],"termid":"GO:0034588"}


id: MONDO:0004217
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A germinoma arising from the brain during childhood.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brain germinoma","termid":"MONDO:0002214"},{"relation_name":"is_a","term_name":"childhood central nervous system germinoma","termid":"MONDO:0004452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"childhood brain germinoma","secondary_identifiers":["DOID:7429","UMLS:C1332948","MEDGEN:272458","NCIT:C6207"],"synonyms":[{"name":"brain germinoma of childhood","type":"exact"},{"name":"germinoma of childhood brain","type":"exact"},{"name":"germinoma of paediatric brain","type":"exact"},{"name":"germinoma of pediatric brain","type":"exact"},{"name":"germinoma of the childhood brain","type":"exact"},{"name":"germinoma of the paediatric brain","type":"exact"},{"name":"germinoma of the pediatric brain","type":"exact"},{"name":"paediatric brain germ cell cancer","type":"exact"},{"name":"paediatric brain germinoma","type":"exact"},{"name":"pediatric brain germ cell cancer","type":"exact"},{"name":"pediatric brain germinoma","type":"exact"}],"termid":"MONDO:0004217","xrefs":{"Monarch":{"xref_id":"0004217"}}}


id: PR:O74841
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An FAD synthase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR23293:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAD synthase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1235.04c","secondary_identifiers":["UniProtKB:O74841"],"synonyms":[{"name":"FAD pyrophosphorylase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"FMN adenylyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-FLAD1","type":"exact"},{"name":"flavin adenine dinucleotide synthase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74841"}


id: PBO:0071132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 134","termid":"PBO:0071132"}


id: PBO:0045410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPPA3 pseudogene 12","termid":"PBO:0045410"}


id: GO:0002001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of renin into the blood stream by juxtoglomerular cells.","definition_xrefs":["ISBN:0721643949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein secretion","termid":"GO:0009306"},{"relation_name":"is_a","term_name":"signal release","termid":"GO:0023061"},{"relation_name":"part_of","term_name":"renal response to blood flow involved in circulatory renin-angiotensin regulation of systemic arterial blood pressure","termid":"GO:0001999"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"renin secretion into blood stream","synonyms":[{"name":"renin release into blood stream","type":"exact"}],"termid":"GO:0002001"}


id: GO:0051028
data:
  {"annotated_genes":["SJAG_03847","SJAG_02704","SJAG_04347","SJAG_01584","SJAG_01652","SJAG_04536","SJAG_02534","SJAG_03283","SJAG_00298","SJAG_02425","SJAG_04645","SJAG_01529","SJAG_01185","SJAG_03002","SJAG_04589","SJAG_04148","SJAG_00992","SJAG_00641","SJAG_04656","SJAG_04115","SJAG_05328","SJAG_01449","SJAG_04202","SJAG_03300","SJAG_00471","SJAG_00375","SJAG_03693","SJAG_04721","SJAG_01083","SJAG_01715","SJAG_02209","SJAG_04360","SJAG_03593","SJAG_03986","SJAG_01467","SJAG_04472","SJAG_00178","SJAG_04310","SJAG_00093","SJAG_01374","SJAG_04017","SJAG_04480","SJAG_01065","SJAG_04379"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[58609,60066,65537],"is_not":false,"summary":null,"term":"GO:0051028"},{"annotations":[74558,74474,91356,75838,78452,103079,61638,63227,79283,81980,119274],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006406"},{"annotations":[74942],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031990"},{"annotations":[111834,113735,120039,98446,94074,74788,120958,113107,103327,98859,109592,71646,118317,82204,74941,75898,105876,112405,73146,77450,117804,116458,75513,104583,118056,79099,103795,76129,76225,76471],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016973"}]},"cv_name":"biological_process","definition":"The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA transport","termid":"GO:0050658"}],"gene_count":44,"genes_by_uniquename":{"SJAG_00093":null,"SJAG_00178":null,"SJAG_00298":null,"SJAG_00375":null,"SJAG_00471":null,"SJAG_00641":null,"SJAG_00992":null,"SJAG_01065":null,"SJAG_01083":null,"SJAG_01185":null,"SJAG_01374":null,"SJAG_01449":null,"SJAG_01467":null,"SJAG_01529":null,"SJAG_01584":null,"SJAG_01652":null,"SJAG_01715":null,"SJAG_02209":null,"SJAG_02425":null,"SJAG_02534":null,"SJAG_02704":null,"SJAG_03002":null,"SJAG_03283":null,"SJAG_03300":null,"SJAG_03593":null,"SJAG_03693":null,"SJAG_03847":null,"SJAG_03986":null,"SJAG_04017":null,"SJAG_04115":null,"SJAG_04148":null,"SJAG_04202":null,"SJAG_04310":null,"SJAG_04347":null,"SJAG_04360":null,"SJAG_04379":null,"SJAG_04472":null,"SJAG_04480":null,"SJAG_04536":null,"SJAG_04589":null,"SJAG_04645":null,"SJAG_04656":null,"SJAG_04721":null,"SJAG_05328":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"mRNA transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"termid":"GO:0051028","terms_by_termid":{"GO:0006406":null,"GO:0016973":null,"GO:0031990":null,"GO:0051028":null}}


id: PBO:0056028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipolysis stimulated lipoprotein receptor","termid":"PBO:0056028"}


id: MONDO:0018238
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare bone disease related to a common gene or pathway defect (obsolete MONDO:0018238)","termid":"MONDO:0018238","xrefs":{"Monarch":{"xref_id":"0018238"}}}


id: MONDO:0859147
data:
  {"annotated_genes":["SJAG_01745"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88350],"is_not":false,"summary":null,"term":"MONDO:0859147"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"progeroid syndrome","termid":"MONDO:0015333"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01745":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019303"}],"interesting_parent_ids":["MONDO:0019303"],"is_obsolete":false,"name":"Marbach-Rustad progeroid syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1784907","OMIM:619322","Orphanet:659873","UMLS:C5543388"],"synonyms":[{"name":"LEMD2-associated nuclear envelopathy with early progeroid appearance","type":"exact"},{"name":"Marbach-Rustad progeroid syndrome","type":"exact"},{"name":"Wormian bones-micrognathia-abnormal dentition-progeroid syndrome","type":"exact"}],"termid":"MONDO:0859147","terms_by_termid":{"MONDO:0859147":null},"xrefs":{"Monarch":{"xref_id":"0859147"}}}


id: FYPO:0007883
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cleavage-dependent termination of transcription by RNA polymerase II is abnormal. In cleavage-dependent termination, co-transcriptional secondary structure-dependent endonucleolytic cleavage triggers RNA polymerase II transcription termination; transcripts are not polyadenylated, and are subsequently rapidly degraded in the nucleus. Termination of all transcripts, or a subset of transcripts, may be affected.","definition_xrefs":["PMID:34352089","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased termination of RNA polymerase II transcription","termid":"FYPO:0006613"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000294","FYPO:0006551","FYPO:0000002"],"is_obsolete":false,"name":"decreased cleavage-dependent termination of RNA polymerase II transcription","synonyms":[{"name":"decreased Pac1-dependent termination of RNA polymerase II transcription","type":"related"},{"name":"decreased cleavage-dependent RNA polymerase II transcription termination","type":"exact"},{"name":"decreased cleavage-dependent premature transcription termination","type":"narrow"},{"name":"decreased cleavage-dependent termination of RNA polymerase II transcription during mitotic cell cycle","type":"related"},{"name":"decreased cleavage-dependent termination of RNA polymerase II transcription during vegetative growth","type":"exact"}],"termid":"FYPO:0007883"}


id: GO:1900183
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of xanthone-containing compound biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ketone biosynthetic process","termid":"GO:0010566"},{"relation_name":"regulates","term_name":"xanthone-containing compound biosynthetic process","termid":"GO:2001307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"regulation of xanthone-containing compound biosynthetic process","synonyms":[{"name":"regulation of xanthone biosynthesis","type":"narrow"},{"name":"regulation of xanthone biosynthetic process","type":"narrow"},{"name":"regulation of xanthone-containing compound anabolism","type":"exact"},{"name":"regulation of xanthone-containing compound biosynthesis","type":"exact"},{"name":"regulation of xanthone-containing compound formation","type":"exact"},{"name":"regulation of xanthone-containing compound synthesis","type":"exact"}],"termid":"GO:1900183"}


id: GO:0042736
data:
  {"annotated_genes":["SJAG_01566","SJAG_03946"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98374,99388],"is_not":false,"summary":null,"term":"GO:0042736"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + NADH = ADP + 2 H+ + NADPH.","definition_xrefs":["EC:2.7.1.86","RHEA:12260"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01566":null,"SJAG_03946":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016301","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"NADH kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:NADH-KINASE-RXN","KEGG_REACTION:R00105"],"synonyms":[{"name":"ATP:NADH 2'-phosphotransferase activity","type":"related"},{"name":"DPNH kinase activity","type":"related"},{"name":"reduced diphosphopyridine nucleotide kinase activity","type":"related"},{"name":"reduced nicotinamide adenine dinucleotide kinase (phosphorylating)","type":"related"}],"termid":"GO:0042736","terms_by_termid":{"GO:0042736":null}}


id: PBO:0000940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydroorotate dehydrogenase Ura3","termid":"PBO:0000940"}


id: PBO:0064949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME nuclear receptor transcriptional regulator","termid":"PBO:0064949"}


id: MONDO:0859229
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebellar dysfunction, impaired intellectual development, and hypogonadotropic hypogonadism","secondary_identifiers":["MEDGEN:1808634","UMLS:C5676924","OMIM:619761"],"termid":"MONDO:0859229","xrefs":{"Monarch":{"xref_id":"0859229"}}}


id: PBO:0034772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial dynamin family scission GTPase Dnm1","termid":"PBO:0034772"}


id: PBO:0088917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein, involved in ribosome biogenesis","termid":"PBO:0088917"}


id: PBO:0073703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SKI proto-oncogene","termid":"PBO:0073703"}


id: PBO:0057646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1238","termid":"PBO:0057646"}


id: PBO:0061606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleobindin 2","termid":"PBO:0061606"}


id: FYPO:0000313
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a germ tube with abnormal morphology (i.e. size, shape, or structure), and does not go on to form a viable dividing cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division","termid":"FYPO:0001991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, with abnormal germ tube morphology","synonyms":[{"name":"inviable after spore germination, undivided cell with abnormal germ tube morphology","type":"exact"},{"name":"inviable following spore germination, without cell division with abnormal germ tube morphology","type":"exact"},{"name":"inviable germinated spore, without cell division, with abnormal germ tube morphology","type":"exact"},{"name":"lethal after spore germination, without cell division, with abnormal germ tube morphology","type":"exact"}],"termid":"FYPO:0000313"}


id: PBO:0029634
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-exocytic_vesicles_present_in_increased_numbers","termid":"PBO:0029634"}


id: GO:0001556
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for an oocyte to attain its fully functional state. Oocyte maturation commences after reinitiation of meiosis commonly starting with germinal vesicle breakdown, and continues up to the second meiotic arrest prior to fertilization.","definition_xrefs":["GOC:devbiol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"cell maturation","termid":"GO:0048469"},{"relation_name":"part_of","term_name":"oocyte development","termid":"GO:0048599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oocyte maturation","secondary_identifiers":["Wikipedia:Oocyte_maturation"],"termid":"GO:0001556"}


id: GO:0140656
data:
  {"annotated_genes":["SJAG_01076"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[118819],"is_not":false,"summary":null,"term":"GO:0140656"}]},"cv_name":"molecular_function","definition":"Binds to and increases the activity of an endodeoxyribonuclease.","definition_xrefs":["PMID:33836577"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclease activator activity","termid":"GO:0170053"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01076":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140677"}],"interesting_parent_ids":["GO:0140677","GO:0030234","GO:0003674","GO:0098772"],"is_obsolete":false,"name":"endodeoxyribonuclease activator activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140656","terms_by_termid":{"GO:0140656":null}}


id: GO:0051126
data:
  {"annotated_genes":["SJAG_03455"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76270],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034316"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of actin nucleation, the initial step in the formation of an actin filament in which actin monomers combine to form a new filament.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of actin nucleation","termid":"GO:0051125"},{"relation_name":"is_a","term_name":"negative regulation of cytoskeleton organization","termid":"GO:0051494"},{"relation_name":"is_a","term_name":"negative regulation of supramolecular fiber organization","termid":"GO:1902904"},{"relation_name":"negatively_regulates","term_name":"actin nucleation","termid":"GO:0045010"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03455":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"negatively_regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007010","GO:0008150","GO:0030036"],"is_obsolete":false,"name":"negative regulation of actin nucleation","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"down regulation of actin nucleation","type":"exact"},{"name":"down-regulation of actin nucleation","type":"exact"},{"name":"downregulation of actin nucleation","type":"exact"},{"name":"inhibition of actin nucleation","type":"narrow"}],"termid":"GO:0051126","terms_by_termid":{"GO:0034316":null}}


id: PBO:0040386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting V1 subunit B1","termid":"PBO:0040386"}


id: PBO:0012599
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae RAD16","termid":"PBO:0012599"}


id: PBO:0077971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 23-1","termid":"PBO:0077971"}


id: MONDO:0017692
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"galactose epimerase deficiency","termid":"MONDO:0009257"},{"relation_name":"is_a","term_name":"disorder of galactose and fructose metabolism","termid":"MONDO:0800152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0037792","MONDO:0005066"],"is_obsolete":false,"name":"generalized galactose epimerase deficiency","secondary_identifiers":["SCTID:297237003","Orphanet:308487","UMLS:C0574089","GARD:17393","MEDGEN:657804"],"synonyms":[{"name":"generalised GALE deficiency","type":"exact"},{"name":"generalised GALE-D","type":"exact"},{"name":"generalised UDP-galactose-4-epimerase deficiency","type":"exact"},{"name":"generalised epimerase deficiency galactosemia","type":"exact"},{"name":"generalised uridine diphosphate galactose-4-epimerase deficiency","type":"exact"},{"name":"generalized GALE deficiency","type":"exact"},{"name":"generalized GALE-D","type":"exact"},{"name":"generalized UDP-galactose-4-epimerase deficiency","type":"exact"},{"name":"generalized epimerase deficiency galactosemia","type":"exact"},{"name":"generalized uridine diphosphate galactose-4-epimerase deficiency","type":"exact"}],"termid":"MONDO:0017692","xrefs":{"Monarch":{"xref_id":"0017692"}}}


id: GO:0033378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a protease to a location within a secretory granule in a T cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of protein localization to T cell secretory granule","termid":"GO:0033376"},{"relation_name":"part_of","term_name":"protease localization to T cell secretory granule","termid":"GO:0033375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"establishment of protease localization to T cell secretory granule","synonyms":[{"name":"establishment of protease localisation in T cell secretory granule","type":"exact"},{"name":"establishment of protease localization in T cell secretory granule","type":"exact"},{"name":"establishment of protease localization in T lymphocyte secretory granule","type":"exact"},{"name":"establishment of protease localization in T-cell secretory granule","type":"exact"},{"name":"establishment of protease localization in T-lymphocyte secretory granule","type":"exact"}],"termid":"GO:0033378"}


id: MONDO:0021070
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from the sublingual gland. Representative examples include cystadenocarcinoma and mucoepidermoid carcinoma.","definition_xrefs":["NCIT:C8397"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sublingual gland cancer","termid":"MONDO:0004667"},{"relation_name":"is_a","term_name":"major salivary gland carcinoma","termid":"MONDO:0006284"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"sublingual gland carcinoma","secondary_identifiers":["MEDGEN:83385","SCTID:254466003","UMLS:C0345611"],"synonyms":[{"name":"carcinoma of sublingual gland","type":"exact"},{"name":"carcinoma of the sublingual gland","type":"exact"},{"name":"sublingual gland cancer","type":"broad"},{"name":"sublingual gland carcinoma","type":"exact"}],"termid":"MONDO:0021070","xrefs":{"Monarch":{"xref_id":"0021070"}}}


id: FYPO:0000937
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cortical microtubule cytoskeleton is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to cell cortex during vegetative growth","termid":"FYPO:0000929"},{"relation_name":"is_a","term_name":"decreased protein localization to microtubule cytoskeleton during vegetative growth","termid":"FYPO:0000933"},{"relation_name":"is_a","term_name":"abnormal protein localization to cortical microtubule cytoskeleton during vegetative growth","termid":"FYPO:0000935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to cortical microtubule cytoskeleton during vegetative growth","synonyms":[{"name":"decreased protein localisation to cortical microtubule cytoskeleton during vegetative growth","type":"exact"},{"name":"decreased protein localization to cortical microtubule cytoskeleton during mitotic cell cycle","type":"related"},{"name":"reduced protein localization to cortical microtubule cytoskeleton during vegetative growth","type":"exact"}],"termid":"FYPO:0000937"}


id: GO:0017118
data:
  {"annotated_genes":["SJAG_01164"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79989],"is_not":false,"summary":null,"term":"GO:0017118"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-lipoyl-5'-AMP + L-lysyl-[lipoyl-carrier protein] = (R)-N6-lipoyl-L-lysyl-[lipoyl-carrier protein] + AMP + 2 H+.","definition_xrefs":["RHEA:20473","PMID:10103005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01164":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"lipoyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0017118","terms_by_termid":{"GO:0017118":null}}


id: PBO:0056131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysozyme","termid":"PBO:0056131"}


id: FYPO:0003705
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to trapoxin A. Cells stop growing (and may die) at a concentration of trapoxin A that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to trapoxin A","synonyms":[{"name":"hypersensitive to trapoxin A","type":"exact"},{"name":"sensitive to trapoxin A during mitotic cell cycle","type":"related"},{"name":"sensitive to trapoxin A during vegetative growth","type":"exact"}],"termid":"FYPO:0003705"}


id: GO:0090100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of transmembrane receptor protein serine/threonine kinase signaling pathway","termid":"GO:0090092"},{"relation_name":"positively_regulates","term_name":"cell surface receptor protein serine/threonine kinase signaling pathway","termid":"GO:0007178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway","synonyms":[{"name":"positive regulation of transmembrane receptor protein serine/threonine kinase signalling pathway","type":"exact"}],"termid":"GO:0090100"}


id: PBO:0050193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 10","termid":"PBO:0050193"}


id: MONDO:1010602
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital hypothyroidism that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital hypothyroidism, non-human animal","termid":"MONDO:1010057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital hypothyroidism, dog","secondary_identifiers":["OMIA:000536-9615"],"termid":"MONDO:1010602","xrefs":{"Monarch":{"xref_id":"1010602"}}}


id: PR:O14304
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC9G1.08c gene.","definition_xrefs":["UniProtKB:O14304","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized hydrolase C9G1.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9G1.08c","synonyms":[{"name":"Spom972h-SPAC9G1.08c","type":"exact"}],"termid":"PR:O14304"}


id: PBO:0062825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OSGEPL1 antisense RNA 1","termid":"PBO:0062825"}


id: GO:0098608
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: methylselenol + H2O => H2Se + CH3OH.","definition_xrefs":["PMID:17988700","PMID:17451884"],"direct_ancestors":[{"relation_name":"is_a","term_name":"demethylase activity","termid":"GO:0032451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674"],"is_obsolete":false,"name":"methylselenol demethylase activity","secondary_identifiers":["Reactome:R-HSA-2408530"],"termid":"GO:0098608"}


id: PBO:0013743
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S pombe Heme Utilization","termid":"PBO:0013743"}


id: MONDO:0011143
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cone-rod dystrophy in which the cause of the disease is a mutation in the GUCY2D gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cone-rod dystrophy","termid":"MONDO:0015993"},{"relation_name":"is_a","term_name":"GUCY2D retinopathy","termid":"MONDO:0100454"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cone-rod dystrophy 6","secondary_identifiers":["MESH:C538363","GARD:10656","UMLS:C1866293","MEDGEN:400963","DOID:0111011","OMIM:601777"],"synonyms":[{"name":"CORD6","type":"exact"},{"name":"GUCY2D cone-rod dystrophy","type":"exact"},{"name":"RCD2","type":"exact"},{"name":"cone-rod dystrophy 6","type":"exact"},{"name":"cone-rod dystrophy caused by mutation in GUCY2D","type":"exact"},{"name":"cone-rod dystrophy type 6","type":"exact"},{"name":"retinal cone dystrophy 2","type":"exact"}],"termid":"MONDO:0011143","xrefs":{"Monarch":{"xref_id":"0011143"}}}


id: MONDO:0013890
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital myopathy with internal nuclei and atypical cores is a rare genetic skeletal muscle disease characterized by neonatal hypotonia, distal more than proximal muscle weakness, progressive exercise intolerance with prominent myalgias, and mild-to-moderate overall motor impairment with preserved ambulation. Face, extraocular, cardiac, and respiratory muscles are unaffected. Mild cognitive impairment is also noted in most patients.","definition_xrefs":["Orphanet:319160"],"direct_ancestors":[{"relation_name":"is_a","term_name":"centronuclear myopathy","termid":"MONDO:0018947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"congenital myopathy with internal nuclei and atypical cores","secondary_identifiers":["OMIM:614807","SCTID:764945007","UMLS:C4707232","MEDGEN:1642424","GARD:17443","DOID:0111224"],"synonyms":[{"name":"CNM4","type":"exact"},{"name":"centronuclear myopathy 4","type":"exact"},{"name":"centronuclear myopathy type 4","type":"exact"},{"name":"myopathy, centronuclear, 4","type":"related"},{"name":"myopathy, centronuclear, type 4","type":"exact"}],"termid":"MONDO:0013890","xrefs":{"Monarch":{"xref_id":"0013890"}}}


id: PBO:0045407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPPA3 pseudogene 9","termid":"PBO:0045407"}


id: PBO:0054380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1776","termid":"PBO:0054380"}


id: MONDO:0000571
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete CD3zeta deficiency (obsolete MONDO:0000571)","termid":"MONDO:0000571","xrefs":{"Monarch":{"xref_id":"0000571"}}}


id: PBO:0004296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial peptidyl-tRNA hydrolase Pth1 (predicted)","termid":"PBO:0004296"}


id: GO:2000670
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of dendritic cell apoptotic process.","definition_xrefs":["GOC:obol","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte apoptotic process","termid":"GO:2000108"},{"relation_name":"is_a","term_name":"regulation of dendritic cell apoptotic process","termid":"GO:2000668"},{"relation_name":"positively_regulates","term_name":"dendritic cell apoptotic process","termid":"GO:0097048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of dendritic cell apoptotic process","synonyms":[{"name":"positive regulation of dendritic cell apoptosis","type":"narrow"}],"termid":"GO:2000670"}


id: GO:0060055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels and contribute to the series of events that restore integrity to a damaged tissue, following an injury.","definition_xrefs":["PMID:15039218","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"angiogenesis","termid":"GO:0001525"},{"relation_name":"part_of","term_name":"wound healing","termid":"GO:0042060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"angiogenesis involved in wound healing","termid":"GO:0060055"}


id: GO:0045756
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the activation, by acetate, of the chemical reactions and pathways resulting in the breakdown of acetate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of initiation of acetate catabolic process by acetate","termid":"GO:0045147"},{"relation_name":"is_a","term_name":"positive regulation of acetate catabolic process","termid":"GO:0045754"},{"relation_name":"is_a","term_name":"positive regulation of response to acetate","termid":"GO:1901459"},{"relation_name":"positively_regulates","term_name":"initiation of acetate catabolic process by acetate","termid":"GO:0045146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"positive regulation of initiation of acetate catabolic process by acetate","synonyms":[{"name":"activation of initiation of acetate catabolic process by acetate","type":"narrow"},{"name":"positive regulation of initiation of acetate breakdown by acetate","type":"exact"},{"name":"positive regulation of initiation of acetate degradation by acetate","type":"exact"},{"name":"stimulation of initiation of acetate catabolic process by acetate","type":"narrow"},{"name":"up regulation of initiation of acetate catabolic process by acetate","type":"exact"},{"name":"up-regulation of initiation of acetate catabolic process by acetate","type":"exact"},{"name":"upregulation of initiation of acetate catabolic process by acetate","type":"exact"}],"termid":"GO:0045756"}


id: GO:0085014
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Entry into a dormant state of the symbiont within the host organism.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dormancy process","termid":"GO:0022611"},{"relation_name":"is_a","term_name":"development of symbiont in host","termid":"GO:0044114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dormancy entry of symbiont in host","termid":"GO:0085014"}


id: GO:0043248
data:
  {"annotated_genes":["SJAG_02570","SJAG_00954","SJAG_00126","SJAG_01652","SJAG_04844","SJAG_04602","SJAG_04290","SJAG_04197"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[58625,59670,63225,106279],"is_not":false,"summary":null,"term":"GO:0043248"},{"annotations":[116847],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0080129"},{"annotations":[81876,117740,101400],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070682"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a mature, active proteasome complex.","definition_xrefs":["GOC:go_curators","PMID:10872471"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00126":null,"SJAG_00954":null,"SJAG_01652":null,"SJAG_02570":null,"SJAG_04197":null,"SJAG_04290":null,"SJAG_04602":null,"SJAG_04844":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"proteasome assembly","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9907900"],"synonyms":[{"name":"26S proteasome assembly","type":"narrow"},{"name":"proteasome complex assembly","type":"exact"},{"name":"proteasome maturation","type":"exact"}],"termid":"GO:0043248","terms_by_termid":{"GO:0043248":null,"GO:0070682":null,"GO:0080129":null}}


id: GO:0044258
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown into fatty acids and monoglycerides of lipids in the small intestine. Lipids are broken down by lipases released by the pancreas.","definition_xrefs":["GOC:jl","PMID:7018485"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid catabolic process","termid":"GO:0016042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"intestinal lipid catabolic process","synonyms":[{"name":"intestinal lipid breakdown","type":"exact"},{"name":"intestinal lipid catabolism","type":"exact"},{"name":"intestinal lipid degradation","type":"exact"}],"termid":"GO:0044258"}


id: MONDO:0031322
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A craniofacial malformation with prosencephalic duplication; the presence of three eyes.","definition_xrefs":["PMID:7548108"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pupil disorder","termid":"MONDO:0002285"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"triopia","secondary_identifiers":["Orphanet:3374","GARD:5286","MEDGEN:1836871","ICD10CM:Q15.8","UMLS:C5816687"],"termid":"MONDO:0031322","xrefs":{"Monarch":{"xref_id":"0031322"}}}


id: GO:0034037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a purine ribonucleoside bisphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar.","definition_xrefs":["GOC:pde","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoside bisphosphate catabolic process","termid":"GO:0034031"},{"relation_name":"is_a","term_name":"purine nucleoside bisphosphate catabolic process","termid":"GO:0034034"},{"relation_name":"is_a","term_name":"purine ribonucleoside bisphosphate metabolic process","termid":"GO:0034035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"purine ribonucleoside bisphosphate catabolic process","synonyms":[{"name":"purine ribonucleoside bisphosphate breakdown","type":"exact"},{"name":"purine ribonucleoside bisphosphate catabolism","type":"exact"},{"name":"purine ribonucleoside bisphosphate degradation","type":"exact"}],"termid":"GO:0034037"}


id: PR:000037317
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein complex that is composed of a dimer of phosphorylated Crb2.","definition_xrefs":["PMID:24074952","PomBase:AL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Crb2 dimer (Schizosaccharomyces pombe)","pombase_gene_id":"SPBC342.05","synonyms":[{"name":"DNA repair protein rhp9 dimer","type":"exact"}],"termid":"PR:000037317"}


id: MOD:00287
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to a (2S,3R,4S)-3,4-dihydroxyproline.","definition_xrefs":["PubMed:12686488","Unimod:425#P","RESID:AA0282","DeltaMass:0","ChEBI:141803"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dihydroxylated proline","termid":"MOD:00866"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(2S,3R,4S)-3,4-dihydroxyproline","synonyms":[{"name":"(2S,3R,4S)-3,4-dihydroxyproline","type":"exact"},{"name":"(2S,3R,4S)-3,4-dihydroxypyrrolidine-2-carboxylic acid","type":"exact"},{"name":"2,3-trans-3,4-cis-3,4-dihydroxy-L-proline","type":"exact"},{"name":"2-alpha-3-beta-4-beta-3,4-dihydroxyproline","type":"exact"},{"name":"3,4-Dihydroxylation (of Proline)","type":"exact"},{"name":"3,4-dihydroxylated L-proline","type":"exact"},{"name":"34Hy2Pro","type":"exact"},{"name":"Dioxidation","type":"related"},{"name":"MOD_RES (3R,4S)-3,4-dihydroxyproline","type":"exact"},{"name":"dihydroxy","type":"related"},{"name":"trans-2,3-cis-3,4-dihydroxy-L-proline","type":"exact"}],"termid":"MOD:00287"}


id: GO:0070273
data:
  {"annotated_genes":["SJAG_01945","SJAG_03705","SJAG_05179","SJAG_01516","SJAG_00663","SJAG_01769","SJAG_04077"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79363,96404,101207,102047,104358,114489,119924],"is_not":false,"summary":null,"term":"GO:0070273"}]},"cv_name":"molecular_function","definition":"Binding to phosphatidylinositol-4-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 4' position.","definition_xrefs":["GOC:bf","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol phosphate binding","termid":"GO:1901981"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00663":null,"SJAG_01516":null,"SJAG_01769":null,"SJAG_01945":null,"SJAG_03705":null,"SJAG_04077":null,"SJAG_05179":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0008289","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"phosphatidylinositol-4-phosphate binding","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0070273","terms_by_termid":{"GO:0070273":null}}


id: PBO:0075157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide C pseudogene 13","termid":"PBO:0075157"}


id: PR:O13746
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC16E8.18 gene.","definition_xrefs":["UniProtKB:O13746","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C16E8.18 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16E8.18","synonyms":[{"name":"Spom972h-SPAC16E8.18","type":"exact"}],"termid":"PR:O13746"}


id: PBO:0057195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 367","termid":"PBO:0057195"}


id: PBO:0002782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex histone acetyltransferase catalytic subunit Gcn5","termid":"PBO:0002782"}


id: PBO:0082278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Anthranilate synthase; catalyzes the initial step of tryptophan biosynthesis, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp3p","termid":"PBO:0082278"}


id: PBO:0072281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S23 pseudogene 10","termid":"PBO:0072281"}


id: GO:0016647
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH group acts as a hydrogen or electron donor and reduces oxygen.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors","termid":"GO:0016645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor","secondary_identifiers":["EC:1.5.3.-"],"termid":"GO:0016647"}


id: GO:0003185
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the structure of the sinoatrial valve is generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart valve morphogenesis","termid":"GO:0003179"},{"relation_name":"part_of","term_name":"sinoatrial valve development","termid":"GO:0003172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sinoatrial valve morphogenesis","synonyms":[{"name":"SA valve morphogenesis","type":"exact"}],"termid":"GO:0003185"}


id: GO:0005281
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete general amino acid permease activity (obsolete GO:0005281)","synonyms":[{"name":"general amino acid permease activity","type":"exact"},{"name":"general amino acid transporter","type":"broad"}],"termid":"GO:0005281"}


id: GO:0006007
data:
  {"annotated_genes":["SJAG_02945","SJAG_04192","SJAG_06622","SJAG_04495","SJAG_02796","SJAG_02369","SJAG_04334","SJAG_03903","SJAG_01310","SJAG_03828","SJAG_03373","SJAG_02107","SJAG_06621","SJAG_00839","SJAG_03660","SJAG_00605","SJAG_00027","SJAG_02009","SJAG_00461","SJAG_02135"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111367,111366,105315,100178,107404,107774,111365,107405,74194,107403,111370,99907,96420,105573,79617,111368,118354,111371,107775,111369],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucose metabolic process","termid":"GO:0006006"},{"relation_name":"is_a","term_name":"hexose catabolic process","termid":"GO:0019320"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00839":null,"SJAG_01310":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"glucose catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"glucose breakdown","type":"exact"},{"name":"glucose catabolism","type":"exact"},{"name":"glucose degradation","type":"exact"}],"termid":"GO:0006007","terms_by_termid":{"GO:0061621":null}}


id: GO:1990512
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Nuclear transcriptional repressor complex that is capable of negatively regulating CLOCK-BMAL-dependent transactivation of genes in a delayed negative feedback manner which generates circadian rhythms.","definition_xrefs":["PMID:24855952","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription repressor complex","termid":"GO:0017053"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"Cry-Per complex","termid":"GO:1990512"}


id: PBO:0084744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial isoleucyl-tRNA synthetase; null mutant is deficient in respiratory growth; human homolog IARS2 implicated in mitochondrial diseases, can partially complement yeast null mutant","termid":"PBO:0084744"}


id: MONDO:0006562
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete incontinentia pigmenti achromians (obsolete MONDO:0006562)","secondary_identifiers":["MESH:D010859","SCTID:218358001","NCIT:C7582"],"synonyms":[{"name":"incontinentia pigmenti achromians syndrome","type":"exact"},{"name":"incontinentia pigmenti syndrome","type":"related"}],"termid":"MONDO:0006562","xrefs":{"Monarch":{"xref_id":"0006562"}}}


id: MOD:01916
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tyrosine residue to O4'-(N-acetylamino)galactosyl-L-tyrosine.","definition_xrefs":["PubMed:21983924","RESID:AA0577","PubMed:21712440"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetylaminogalactosylated residue","termid":"MOD:00563"},{"relation_name":"is_a","term_name":"O-glycosyl-L-tyrosine","termid":"MOD:01927"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O4'-(N-acetylamino)galactosyl-L-tyrosine","synonyms":[{"name":"(2S)-2-amino-3-(D-2-acetamido-2-deoxygalactopyranosyloxy)phenylpropanoic acid","type":"exact"},{"name":"CARBOHYD O-linked (GalNAc) tyrosine","type":"exact"},{"name":"O4'-(N-acetylamino)galactosyl-L-tyrosine","type":"exact"},{"name":"O4'-(N-acetylgalactosaminyl)tyrosine","type":"exact"},{"name":"O4'-glycosyl-L-tyrosine","type":"exact"},{"name":"mucin type O-glycosyltyrosine","type":"exact"}],"termid":"MOD:01916"}


id: PBO:0117096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTPRC antisense RNA 1","termid":"PBO:0117096"}


id: PBO:0081854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 787","termid":"PBO:0081854"}


id: PBO:0042082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 149","termid":"PBO:0042082"}


id: MONDO:0003047
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An aggressive, non-small cell, poorly differentiated thymic neuroendocrine carcinoma, characterized by the presence of a high mitotic rate and, almost always, necrosis.","definition_xrefs":["NCIT:C6461"],"direct_ancestors":[{"relation_name":"is_a","term_name":"large cell neuroendocrine carcinoma","termid":"MONDO:0005057"},{"relation_name":"is_a","term_name":"thymic neuroendocrine carcinoma","termid":"MONDO:0020516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"thymic large cell neuroendocrine carcinoma","secondary_identifiers":["DOID:4553","UMLS:C1334364","MEDGEN:235250"],"synonyms":[{"name":"Thymus large cell carcinoma","type":"exact"},{"name":"large cell carcinoma of the Thymus","type":"exact"},{"name":"large cell neuroendocrine carcinoma of Thymus","type":"exact"},{"name":"large cell neuroendocrine carcinoma of the Thymus","type":"exact"},{"name":"large cell neuroendocrine carcinoma of thymus","type":"exact"},{"name":"thymic LCNEC","type":"exact"},{"name":"thymic large cell neuroendocrine carcinoma","type":"exact"},{"name":"thymus large cell carcinoma","type":"exact"},{"name":"thymus large cell neuroendocrine carcinoma","type":"exact"}],"termid":"MONDO:0003047","xrefs":{"Monarch":{"xref_id":"0003047"}}}


id: GO:0015056
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with the corticotrophin-releasing factor family of ligands, including the urocortins, to initiate a change in cell activity.","definition_xrefs":["PMID:12032352"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"corticotrophin-releasing factor receptor activity","termid":"GO:0015056"}


id: PR:Q9P7V3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A translin that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10741:SF2","PRO:DNx","OMA:SCHPO01818"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translin-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC30.03c","secondary_identifiers":["UniProtKB:Q9P7V3"],"synonyms":[{"name":"Spom972h-TSN","type":"exact"},{"name":"meiotically up-regulated gene 90 protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"translin homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7V3"}


id: PBO:0111899
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRIP domain","termid":"PBO:0111899"}


id: GO:0141109
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of a transporter.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular function activator activity","termid":"GO:0140677"},{"relation_name":"is_a","term_name":"transporter regulator activity","termid":"GO:0141108"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0098772","GO:0140677","GO:0003674"],"is_obsolete":false,"name":"transporter activator activity","termid":"GO:0141109"}


id: GO:0009951
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process resulting in the establishment of polarity along the dorsal/ventral axis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of axis polarity","termid":"GO:0065001"},{"relation_name":"part_of","term_name":"dorsal/ventral axis specification","termid":"GO:0009950"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"polarity specification of dorsal/ventral axis","synonyms":[{"name":"polarity specification of dorsal-ventral axis","type":"exact"},{"name":"polarity specification of dorsoventral axis","type":"exact"}],"termid":"GO:0009951"}


id: SO:1000107
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000107 mutation_causing_out_of_frame_polypeptide_N_terminal_elongation (obsolete SO:1000107)","synonyms":[{"name":"mutation causing out of frame polypeptide N terminal elongation","type":"exact"},{"name":"out of frame polypeptide N-terminal elongation","type":"exact"}],"termid":"SO:1000107"}


id: PBO:0042905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cofilin 1 pseudogene 2","termid":"PBO:0042905"}


id: FYPO:0001701
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to bortezomib. Cells stop growing (and may die) at a concentration of bortezomib that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0001985","FYPO:0000139","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to bortezomib","synonyms":[{"name":"hypersensitive to bortezomib","type":"exact"},{"name":"sensitive to Velcade","type":"exact"},{"name":"sensitive to bortezomib during mitotic cell cycle","type":"related"},{"name":"sensitive to bortezomib during vegetative growth","type":"exact"}],"termid":"FYPO:0001701"}


id: PBO:0056376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase 8 interacting protein 3","termid":"PBO:0056376"}


id: MONDO:0018698
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An instance of neuroendocrine tumor of the small intestine that is caused by an inherited modification of the individual's genome.","definition_xrefs":["MONDO:patterns/hereditary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"small intestine neuroendocrine neoplasm","termid":"MONDO:0018510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"hereditary neuroendocrine tumor of small intestine","secondary_identifiers":["GARD:21899","MEDGEN:1826066","UMLS:C5679993","Orphanet:456333"],"synonyms":[{"name":"hereditary neuroendocrine tumor of small bowel","type":"exact"},{"name":"hereditary neuroendocrine tumor of the small intestine","type":"exact"},{"name":"hereditary neuroendocrine tumour of small bowel","type":"exact"},{"name":"hereditary neuroendocrine tumour of the small intestine","type":"exact"},{"name":"hereditary small intestine neuroendocrine neoplasm","type":"exact"}],"termid":"MONDO:0018698","xrefs":{"Monarch":{"xref_id":"0018698"}}}


id: PBO:0004226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic proline-tRNA ligase Prs1 (predicted)","termid":"PBO:0004226"}


id: FYPO:0002855
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of glutamate-cysteine ligase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal glutamate-cysteine ligase activity","termid":"FYPO:0002853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000654","FYPO:0000661","FYPO:0000707"],"is_obsolete":false,"name":"decreased glutamate-cysteine ligase activity","synonyms":[{"name":"reduced glutamate-cysteine ligase activity","type":"exact"}],"termid":"FYPO:0002855"}


id: GO:0048383
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the mesectoderm over time, from its formation to the mature structure. In animal embryos, mesectoderm development processes give rise to both mesoderm and ectoderm tissues.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue development","termid":"GO:0009888"},{"relation_name":"part_of","term_name":"ectoderm development","termid":"GO:0007398"},{"relation_name":"part_of","term_name":"mesoderm development","termid":"GO:0007498"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesectoderm development","termid":"GO:0048383"}


id: FYPO:0007262
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, morphology, or other physical characteristic of the eisosome is abnormal. The eisosome consists of a furrow-like plasma membrane sub-domain and associated integral transmembrane proteins, and the proteins (eisosome filaments) that form a scaffolding lattice on the cytoplasmic face.","definition_xrefs":["GO:0032126","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal eisosome","synonyms":[{"name":"abnormal eisosome during mitotic cell cycle","type":"related"},{"name":"abnormal eisosome during vegetative growth","type":"exact"},{"name":"abnormal eisosomes","type":"exact"}],"termid":"FYPO:0007262"}


id: SO:0000667
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_alteration","termid":"SO:0001059"},{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insertion","secondary_identifiers":["SO:1000034","loinc:LA6687-3"],"synonyms":[{"name":"insertion","type":"exact"},{"name":"nucleotide insertion","type":"exact"},{"name":"nucleotide_insertion","type":"exact"}],"termid":"SO:0000667"}


id: PBO:0069375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 635, pseudogene","termid":"PBO:0069375"}


id: GO:0086082
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein or protein complex that results in the connection of an AV node cell with a bundle of His cell and contributes to the communication between the two cells.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding involved in heterotypic cell-cell adhesion","termid":"GO:0086080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0098631"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0098631","GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"cell adhesive protein binding involved in AV node cell-bundle of His cell communication","synonyms":[{"name":"cell adhesive protein binding involved in atrioventricular node cell-bundle of His cell communication","type":"exact"}],"termid":"GO:0086082"}


id: PBO:0043694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 5B","termid":"PBO:0043694"}


id: PBO:0076008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stimulator of interferon response cGAMP interactor 1","termid":"PBO:0076008"}


id: PBO:0088734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Armadillo-type fold protein, zf-MYND type zinc finger protein, Mub1-Rad6-Ubr2 ubiquitin ligase complex Mub1","termid":"PBO:0088734"}


id: PBO:0089007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane potassium ion transmembrane transporter Trk1","termid":"PBO:0089007"}


id: GO:0097716
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of copper (Cu) ions passing through the blood-brain barrier.","definition_xrefs":["GOC:sl","PMID:24614235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"copper ion transport","termid":"GO:0006825"},{"relation_name":"is_a","term_name":"transport across blood-brain barrier","termid":"GO:0150104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"copper ion transport across blood-brain barrier","synonyms":[{"name":"copper ion transport across BBB","type":"related"}],"termid":"GO:0097716"}


id: GO:0051292
data:
  {"annotated_genes":["SJAG_01833"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109722],"is_not":false,"summary":null,"term":"GO:0051292"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a nuclear pore complex.","definition_xrefs":["GOC:mah","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear pore organization","termid":"GO:0006999"},{"relation_name":"is_a","term_name":"pore complex assembly","termid":"GO:0046931"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01833":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"nuclear pore complex assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"NPC assembly","type":"exact"},{"name":"nuclear pore assembly","type":"exact"},{"name":"nuclear pore biogenesis","type":"exact"},{"name":"nuclear pore biosynthesis","type":"exact"},{"name":"nuclear pore complex biogenesis","type":"exact"},{"name":"nuclear pore complex biosynthesis","type":"exact"},{"name":"nuclear pore complex formation","type":"exact"},{"name":"nuclear pore formation","type":"exact"}],"termid":"GO:0051292","terms_by_termid":{"GO:0051292":null}}


id: MONDO:0100414
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any acute myeloid leukemia that has the chromosomal anomaly CEBPA gene mutation. (Mutation of the CEBPA gene encoding CCAAT/enhancer binding protein alpha. It is seen in acute myeloid leukemias usually associated with a normal karyotype.)","definition_xrefs":["NCIT:C38372"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute myeloid leukemia","termid":"MONDO:0018874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"acute myeloid leukemia, CEBPA gene mutation","secondary_identifiers":["NCIT:C151898"],"synonyms":[{"name":"AML, C/EBP-Alpha Gene Mutation","type":"exact"},{"name":"AML, C/EBPalpha Mutation","type":"exact"},{"name":"AML, CCAAT Enhancer Binding Protein Alpha Gene Mutation","type":"exact"},{"name":"AML, CCAAT/Enhancer Binding Protein, Alpha Gene Mutation","type":"exact"},{"name":"AML, CEBP Gene Mutation","type":"exact"},{"name":"AML, CEBPA Mutation","type":"exact"},{"name":"AML, CEBPA gene mutation","type":"exact"}],"termid":"MONDO:0100414","xrefs":{"Monarch":{"xref_id":"0100414"}}}


id: MONDO:0009105
data:
  {"annotated_genes":["SJAG_04118","SJAG_03805"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88260],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0024541"},{"annotations":[88111],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013818"}]},"cv_name":"mondo","definition":"A severe congenital enteropathy manifesting as intractable diarrhea in the first month of life with failure to thrive and associated with facial dysmorphism, hair abnormalities, and, in some cases, immune disorders and intrauterine growth restriction.","definition_xrefs":["Orphanet:84064"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn error of immunity","termid":"MONDO:0003778"},{"relation_name":"is_a","term_name":"intestinal disorder","termid":"MONDO:0005020"},{"relation_name":"is_a","term_name":"hereditary disorder of connective tissue","termid":"MONDO:0023603"},{"relation_name":"is_a","term_name":"type 1 interferonopathy of childhood","termid":"MONDO:0957408"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03805":null,"SJAG_04118":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0005046"],"is_obsolete":false,"name":"trichohepatoenteric syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:5258","OMIMPS:222470","UMLS:C1857276","MEDGEN:347405","SCTID:703406006","icd11.foundation:1470910753","DOID:0111414"],"synonyms":[{"name":"SD/THE","type":"exact"},{"name":"Syndromatic diarrhea","type":"related"},{"name":"Syndromatic diarrhoea","type":"related"},{"name":"THES1","type":"related"},{"name":"Tricho-hepato-enteric syndrome","type":"exact"},{"name":"Trichohepatoenteric syndrome","type":"exact"},{"name":"Trichohepatoenteric syndrome type 1","type":"exact"},{"name":"phenotypic diarrhea","type":"exact"},{"name":"phenotypic diarrhoea","type":"exact"},{"name":"syndromic diarrhea","type":"exact"},{"name":"syndromic diarrhea/Tricho-hepato-enteric syndrome","type":"exact"},{"name":"syndromic diarrhoea","type":"exact"}],"termid":"MONDO:0009105","terms_by_termid":{"MONDO:0013818":null,"MONDO:0024541":null},"xrefs":{"Monarch":{"xref_id":"0009105"}}}


id: MONDO:1012447
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"gyrate atrophy of choroid and retina, non-human animal","termid":"MONDO:1011995"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gyrate atrophy of choroid and retina, domestic cat","secondary_identifiers":["OMIA:001774-9685"],"termid":"MONDO:1012447","xrefs":{"Monarch":{"xref_id":"1012447"}}}


id: CHEBI:23414
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"A metal sulfate compound having copper(2+) as the counterion.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper(2+) sulfate","termid":"CHEBI:23414"}


id: PATO:0001903
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A directional quality inhering in a bearer by virtue of the bearer's having two directions.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"direction","termid":"PATO:0000039"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bi-directional","termid":"PATO:0001903"}


id: MONDO:0020357
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital abnormality in which a part of the upper or lower eyelid tissue is missing.","definition_xrefs":["NCIT:C98878"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coloboma","termid":"MONDO:0001476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"coloboma of eyelid","secondary_identifiers":["GARD:19605","UMLS:C0521573","SCTID:95202004","icd11.foundation:684436925","Orphanet:98946","MEDGEN:141737"],"synonyms":[{"name":"coloboma of the eyelid","type":"exact"}],"termid":"MONDO:0020357","xrefs":{"Monarch":{"xref_id":"0020357"}}}


id: GO:1905469
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of clathrin-coated pit assembly.","definition_xrefs":["GOC:TermGenie","GOC:PARL","PMID:26589353","GO_REF:0000058","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of clathrin-coated pit assembly (obsolete GO:1905469)","synonyms":[{"name":"down regulation of clathrin-coated pit assembly","type":"exact"},{"name":"down regulation of clathrin-coated pit formation","type":"exact"},{"name":"down regulation of coated pit assembly","type":"exact"},{"name":"down regulation of coated pit formation","type":"exact"},{"name":"down-regulation of clathrin-coated pit assembly","type":"exact"},{"name":"down-regulation of clathrin-coated pit formation","type":"exact"},{"name":"down-regulation of coated pit assembly","type":"exact"},{"name":"down-regulation of coated pit formation","type":"exact"},{"name":"downregulation of clathrin-coated pit assembly","type":"exact"},{"name":"downregulation of clathrin-coated pit formation","type":"exact"},{"name":"downregulation of coated pit assembly","type":"exact"},{"name":"downregulation of coated pit formation","type":"exact"},{"name":"inhibition of clathrin-coated pit assembly","type":"narrow"},{"name":"inhibition of clathrin-coated pit formation","type":"narrow"},{"name":"inhibition of coated pit assembly","type":"narrow"},{"name":"inhibition of coated pit formation","type":"narrow"},{"name":"negative regulation of clathrin-coated pit formation","type":"exact"},{"name":"negative regulation of coated pit assembly","type":"exact"},{"name":"negative regulation of coated pit formation","type":"exact"}],"termid":"GO:1905469"}


id: PR:Q9Y7T9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC63.13 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7T9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized J domain-containing protein C63.13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC63.13","synonyms":[{"name":"Spom972h-SPCC63.13","type":"exact"}],"termid":"PR:Q9Y7T9"}


id: MONDO:0005656
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections with nematodes of the order ascaridida.","definition_xrefs":["MESH:D017191"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Rhabditida infectious disease","termid":"MONDO:0005943"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ascaridida infectious disease","synonyms":[{"name":"Ascaridida caused disease or disorder","type":"exact"},{"name":"Ascaridida disease or disorder","type":"exact"},{"name":"Ascaridida infection","type":"related"},{"name":"infection, Ascaridida","type":"related"},{"name":"infections, Ascaridida","type":"related"}],"termid":"MONDO:0005656","xrefs":{"Monarch":{"xref_id":"0005656"}}}


id: FYPO:0004687
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to lovastatin. Cells stop growing (and may die) at a concentration of lovastatin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002683","FYPO:0000003","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to lovastatin","synonyms":[{"name":"hypersensitive to lovastatin","type":"exact"},{"name":"sensitive to lovastatin during mitotic cell cycle","type":"related"},{"name":"sensitive to lovastatin during vegetative growth","type":"exact"}],"termid":"FYPO:0004687"}


id: MONDO:0009193
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epithelial squamous dysplasia, keratinizing desquamative, of urinary tract","secondary_identifiers":["MESH:C565584","OMIM:226985","MEDGEN:384010","UMLS:C1856902"],"synonyms":[{"name":"epithelial squamous dysplasia, keratinizing desquamative, of urinary tract","type":"exact"}],"termid":"MONDO:0009193","xrefs":{"Monarch":{"xref_id":"0009193"}}}


id: PBO:0063370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylcholine transfer protein","termid":"PBO:0063370"}


id: PBO:0059650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO1 pseudogene 16","termid":"PBO:0059650"}


id: GO:0018971
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products, that occur in the absence of oxygen.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toluene metabolic process","termid":"GO:0018970"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anaerobic toluene metabolic process","secondary_identifiers":["UM-BBD_pathwayID:tol2"],"synonyms":[{"name":"anaerobic toluene metabolism","type":"exact"}],"termid":"GO:0018971"}


id: MONDO:0015372
data:
  {"annotated_genes":["SJAG_04003","SJAG_02509","SJAG_04621","SJAG_04387"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88473],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0800047"},{"annotations":[88804,88805],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030827"},{"annotations":[86977],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014078"}]},"cv_name":"mondo","definition":"This syndrome is characterized by congenital thrombocytopenia associated with the presence of large platelets.","definition_xrefs":["Orphanet:140957"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited thrombocytopenia","termid":"MONDO:0100241"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02509":null,"SJAG_04003":null,"SJAG_04387":null,"SJAG_04621":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"autosomal dominant macrothrombocytopenia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:16965","SCTID:720521008","UMLS:C4304021","MEDGEN:929690"],"termid":"MONDO:0015372","terms_by_termid":{"MONDO:0014078":null,"MONDO:0030827":null,"MONDO:0800047":null},"xrefs":{"Monarch":{"xref_id":"0015372"}}}


id: GO:0021649
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the vestibulocochlear nerve. This process pertains to the physical shaping of a rudimentary structure. This sensory nerve innervates the membranous labyrinth of the inner ear. The vestibular branch innervates the vestibular apparatus that senses head position changes relative to gravity. The auditory branch innervates the cochlear duct, which is connected to the three bony ossicles which transduce sound waves into fluid movement in the cochlea.","definition_xrefs":["GOC:cls","GO_REF:0000021","GOC:dgh","GOC:dph","GOC:jid","ISBN:0838580343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve structural organization","termid":"GO:0021604"},{"relation_name":"part_of","term_name":"vestibulocochlear nerve morphogenesis","termid":"GO:0021648"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vestibulocochlear nerve structural organization","synonyms":[{"name":"CN VII structural organization","type":"related"},{"name":"vestibulocochlear nerve structural organisation","type":"exact"}],"termid":"GO:0021649"}


id: PBO:0085354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phospholipid translocase (flippase); involved in generating phospholipid asymmetry in the plasma membrane; involved in endocytosis, vacuolar biogenesis and Golgi-to-ER vesicle-mediated transport; localizes to endosomes and the Golgi apparatus","termid":"PBO:0085354"}


id: GO:0045892
data:
  {"annotated_genes":["SJAG_01799","SJAG_00441","SJAG_00996","SJAG_01230","SJAG_04381","SJAG_00290","SJAG_02104","SJAG_04268","SJAG_04921","SJAG_00802","SJAG_02255","SJAG_01707","SJAG_04039","SJAG_04512","SJAG_00410","SJAG_04026","SJAG_00861","SJAG_00142","SJAG_01254","SJAG_03473","SJAG_00163","SJAG_00926","SJAG_02898","SJAG_02444","SJAG_00266","SJAG_05343","SJAG_03067","SJAG_04607","SJAG_02730","SJAG_03143","SJAG_02846","SJAG_00987","SJAG_02858","SJAG_04613","SJAG_01199","SJAG_01680","SJAG_04249","SJAG_01157","SJAG_02385","SJAG_00792","SJAG_01728","SJAG_03319","SJAG_01804","SJAG_02752","SJAG_03845","SJAG_03081","SJAG_04584","SJAG_04539","SJAG_04312","SJAG_00124","SJAG_02048","SJAG_01000","SJAG_00969","SJAG_02981","SJAG_01311"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103000],"is_not":false,"summary":null,"term":"GO:0045892"},{"annotations":[109932],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060195"},{"annotations":[75433,95176,98189,102923,105889,107763,108686,110986,114965,108206,61721,58281,78527,81375,95624,116263,119381,96114,115825,94018,76064,77111,73640,75564,96536,71854,100801,114078,110197,106194,96620,107859,72288,78910,94040,108706,110539,93135,95767,113131,103781,82245,95275,74984,89450,74176,108454,75791,109934,112702,105488,93061],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000122"},{"annotations":[75549],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016480"},{"annotations":[102924],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010621"},{"annotations":[119948],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034244"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.","definition_xrefs":["GOC:go_curators","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated transcription","termid":"GO:0006355"},{"relation_name":"is_a","term_name":"negative regulation of RNA biosynthetic process","termid":"GO:1902679"},{"relation_name":"negatively_regulates","term_name":"DNA-templated transcription","termid":"GO:0006351"}],"gene_count":55,"genes_by_uniquename":{"SJAG_00124":null,"SJAG_00142":null,"SJAG_00163":null,"SJAG_00266":null,"SJAG_00290":null,"SJAG_00410":null,"SJAG_00441":null,"SJAG_00792":null,"SJAG_00802":null,"SJAG_00861":null,"SJAG_00926":null,"SJAG_00969":null,"SJAG_00987":null,"SJAG_00996":null,"SJAG_01000":null,"SJAG_01157":null,"SJAG_01199":null,"SJAG_01230":null,"SJAG_01254":null,"SJAG_01311":null,"SJAG_01680":null,"SJAG_01707":null,"SJAG_01728":null,"SJAG_01799":null,"SJAG_01804":null,"SJAG_02048":null,"SJAG_02104":null,"SJAG_02255":null,"SJAG_02385":null,"SJAG_02444":null,"SJAG_02730":null,"SJAG_02752":null,"SJAG_02846":null,"SJAG_02858":null,"SJAG_02898":null,"SJAG_02981":null,"SJAG_03067":null,"SJAG_03081":null,"SJAG_03143":null,"SJAG_03319":null,"SJAG_03473":null,"SJAG_03845":null,"SJAG_04026":null,"SJAG_04039":null,"SJAG_04249":null,"SJAG_04268":null,"SJAG_04312":null,"SJAG_04381":null,"SJAG_04512":null,"SJAG_04539":null,"SJAG_04584":null,"SJAG_04607":null,"SJAG_04613":null,"SJAG_04921":null,"SJAG_05343":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0006351","GO:0006355","GO:0008150"],"is_obsolete":false,"name":"negative regulation of DNA-templated transcription","references_by_uniquename":{"GO_REF:0000024":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:0016481","GO:0061021","GO:0032582"],"synonyms":[{"name":"down regulation of gene-specific transcription","type":"related"},{"name":"down regulation of transcription, DNA-dependent","type":"exact"},{"name":"down-regulation of gene-specific transcription","type":"related"},{"name":"down-regulation of transcription, DNA-dependent","type":"exact"},{"name":"downregulation of gene-specific transcription","type":"related"},{"name":"downregulation of transcription, DNA-dependent","type":"exact"},{"name":"inhibition of gene-specific transcription","type":"related"},{"name":"inhibition of transcription, DNA-dependent","type":"narrow"},{"name":"negative regulation of cellular transcription, DNA-dependent","type":"exact"},{"name":"negative regulation of gene-specific transcription","type":"related"},{"name":"negative regulation of transcription, DNA-dependent","type":"exact"},{"name":"negative regulation of transcription, DNA-templated","type":"exact"},{"name":"transcription repressor activity","type":"related"}],"termid":"GO:0045892","terms_by_termid":{"GO:0000122":null,"GO:0010621":null,"GO:0016480":null,"GO:0034244":null,"GO:0045892":null,"GO:0060195":null}}


id: PBO:0116199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein repair carboxyl methyl esterase, Pme1","termid":"PBO:0116199"}


id: PBO:0091849
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae CLA4","termid":"PBO:0091849"}


id: PBO:0062226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily AW member 1 pseudogene","termid":"PBO:0062226"}


id: PBO:0055354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2783","termid":"PBO:0055354"}


id: GO:0043676
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The layer of sexine which forms a roof over the columella, granules or other infratectal elements.","definition_xrefs":["PMID:33706055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"sexine","termid":"GO:0043673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"tectum","synonyms":[{"name":"sexine 2","type":"exact"}],"termid":"GO:0043676"}


id: MONDO:1011937
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"type-II collagen-immune complex arthritis, non-human animal","secondary_identifiers":["OMIA:000068"],"termid":"MONDO:1011937","xrefs":{"Monarch":{"xref_id":"1011937"}}}


id: GO:0080053
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phenylalanine stimulus.","definition_xrefs":["PMID:15889294"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to amino acid","termid":"GO:0043200"},{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to phenylalanine","termid":"GO:0080053"}


id: PATO:0000845
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000845 auditory ability (obsolete PATO:0000845)","termid":"PATO:0000845"}


id: PBO:0029674
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_multinucleate_vegetative_cell_with_abnormal_septum_morphology","termid":"PBO:0029674"}


id: GO:0043015
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to the microtubule constituent protein gamma-tubulin.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tubulin binding","termid":"GO:0015631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0008092","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"gamma-tubulin binding","synonyms":[{"name":"gamma tubulin binding","type":"exact"}],"termid":"GO:0043015"}


id: MONDO:0005424
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Enlargement of an area of the body due to obstruction within the lymphatic system and the resulting accumulation of lymph.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphedema","termid":"MONDO:0019297"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"elephantiasis","secondary_identifiers":["UMLS:C0013882","MEDGEN:8582","EFO:0004711","MESH:D004604","SCTID:240820001","DOID:4976"],"termid":"MONDO:0005424","xrefs":{"Monarch":{"xref_id":"0005424"}}}


id: PATO:0000467
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's existence.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amount","termid":"PATO:0000070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"present","synonyms":[{"name":"present in organism","type":"related"}],"termid":"PATO:0000467"}


id: PBO:0040777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bestrophin 3","termid":"PBO:0040777"}


id: SO:1000173
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A duplication consisting of 2 identical adjacent regions.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"duplication","termid":"SO:1000035"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tandem_duplication","synonyms":[{"name":"erverted","type":"related"},{"name":"tandem duplication","type":"exact"}],"termid":"SO:1000173"}


id: MONDO:0024281
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of conditions used to describe polyarthritis occurring in children.","definition_xrefs":["NCIT:C26979"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyarticular arthritis","termid":"MONDO:0024280"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"juvenile chronic polyarthritis","secondary_identifiers":["UMLS:C0409667","MEDGEN:140816"],"synonyms":[{"name":"juvenile chronic polyarthritis","type":"exact"}],"termid":"MONDO:0024281","xrefs":{"Monarch":{"xref_id":"0024281"}}}


id: GO:0031055
data:
  {"annotated_genes":["SJAG_00684","SJAG_03905","SJAG_01611","SJAG_00045","SJAG_04547","SJAG_00756","SJAG_03183","SJAG_02908","SJAG_04696","SJAG_02119","SJAG_04038","SJAG_00873","SJAG_02872","SJAG_05273","SJAG_02303","SJAG_03867","SJAG_00307","SJAG_03619","SJAG_04989","SJAG_04581"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[119707,81615,103997,101305,101053,116221,109303,94673,120883,118472,108319,115105,73113,120847,96592,117082,97373,90737,91932,104841],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034080"}]},"cv_name":"biological_process","definition":"Dynamic structural changes in centromeric DNA.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin remodeling","termid":"GO:0006338"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00045":null,"SJAG_00307":null,"SJAG_00684":null,"SJAG_00756":null,"SJAG_00873":null,"SJAG_01611":null,"SJAG_02119":null,"SJAG_02303":null,"SJAG_02872":null,"SJAG_02908":null,"SJAG_03183":null,"SJAG_03619":null,"SJAG_03867":null,"SJAG_03905":null,"SJAG_04038":null,"SJAG_04547":null,"SJAG_04581":null,"SJAG_04696":null,"SJAG_04989":null,"SJAG_05273":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006325","GO:0008150"],"is_obsolete":false,"name":"chromatin remodeling at centromere","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"chromatin remodelling at centromere","type":"exact"}],"termid":"GO:0031055","terms_by_termid":{"GO:0034080":null}}


id: GO:0110016
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A chromatin remodeling complex that positively regulates histone H3 acetylation, in particular H3K9, by recruiting histone acetyltransferases to rDNA gene regions. Located in the nucleolus where it assembles on RNA Polymerase I (Pol I) and possibly on RNA Polymerase III (Pol III) promoter and coding regions during early G1 phase and activates the post-initiation phases of Pol I transcription. May also activate RNA Polymerase II (Pol II) gene transcription. In mammals, B-WICH contains the WICH complex core of BAZ1B and SMARCA5, additional protein subunits and possibly rRNAs. Although it contains several catalytic subunits it is not clear which functions are carried out by the complex itself.","definition_xrefs":["PMID:21559432","PMID:26044184","PMID:23555303","GOC:bhm","PMID:16603771"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SWI/SNF superfamily-type complex","termid":"GO:0070603"},{"relation_name":"part_of","term_name":"nucleolus","termid":"GO:0005730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005730"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0005694","GO:0005730","GO:0032991"],"is_obsolete":false,"name":"B-WICH complex","termid":"GO:0110016"}


id: GO:0120039
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a plasma membrane bounded cell projection are generated and organized.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell projection morphogenesis","termid":"GO:0048858"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"plasma membrane bounded cell projection morphogenesis","termid":"GO:0120039"}


id: SO:0001988
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A 5' UTR variant where a premature start codon is gained.","definition_xrefs":["Sanger:am"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5_prime_UTR_premature_start_codon_variant","termid":"SO:0001983"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5_prime_UTR_premature_start_codon_gain_variant","secondary_identifiers":["http://snpeff.sourceforge.net/SnpEff_manual.html"],"synonyms":[{"name":"5 prime UTR premature start codon gain variant","type":"exact"},{"name":"Jannovar:5_prime_UTR_premature_start_codon_gain_variant","type":"exact"},{"name":"snpEff:START_GAINED","type":"exact"}],"termid":"SO:0001988"}


id: PBO:0059326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L58","termid":"PBO:0059326"}


id: PBO:0027686
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_single_or_double_cell_division,_branched,_elongated_cell","termid":"PBO:0027686"}


id: PBO:0088448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hsp40 family ER-associated DNAJ domain protein Scj1","termid":"PBO:0088448"}


id: PBO:0039555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD49 pseudogene 2","termid":"PBO:0039555"}


id: GO:1901214
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of neuron death.","definition_xrefs":["GOC:TermGenie","GOC:rph"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of neuron death (obsolete GO:1901214)","synonyms":[{"name":"regulation of neuron cell death","type":"exact"},{"name":"regulation of neuronal cell death","type":"exact"}],"termid":"GO:1901214"}


id: PBO:0064168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group IVE","termid":"PBO:0064168"}


id: GO:0043861
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: agmatine(out) + putrescine(in) = agmatine(in) + putrescine(out).","definition_xrefs":["PMID:17028272","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antiporter activity","termid":"GO:0015297"},{"relation_name":"is_a","term_name":"putrescine transmembrane transporter activity","termid":"GO:0015489"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"agmatine:putrescine antiporter activity","synonyms":[{"name":"agmatine-putrescine antiporter activity","type":"exact"},{"name":"agmatine/putrescine antiporter activity","type":"exact"}],"termid":"GO:0043861"}


id: GO:0071910
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Determination of the asymmetric location of the liver with respect to the left and right halves of the organism.","definition_xrefs":["GOC:cvs"],"direct_ancestors":[{"relation_name":"is_a","term_name":"determination of left/right symmetry","termid":"GO:0007368"},{"relation_name":"part_of","term_name":"liver development","termid":"GO:0001889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"determination of liver left/right asymmetry","termid":"GO:0071910"}


id: PBO:0074871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 54","termid":"PBO:0074871"}


id: PATO:0000724
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000724 low yield (obsolete PATO:0000724)","termid":"PATO:0000724"}


id: PBO:0002795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic recombination protein Rec24","termid":"PBO:0002795"}


id: PBO:0079617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 L2 (pseudogene)","termid":"PBO:0079617"}


id: GO:0042815
data:
  {"annotated_genes":["SJAG_02392","SJAG_04509","SJAG_01017","SJAG_02169","SJAG_00244","SJAG_03581","SJAG_00514"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89747,95903],"is_not":false,"summary":null,"term":"GO:0042815"},{"annotations":[97748,91735,96473],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0051519"},{"annotations":[92598],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0051517"},{"annotations":[117050],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0051516"}]},"cv_name":"biological_process","definition":"The process in which a cell irreversibly increases in size along one axis through simultaneous polarized growth from opposite ends of a cell, resulting in morphogenesis of the cell.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"unidimensional cell growth","termid":"GO:0009826"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_00514":null,"SJAG_01017":null,"SJAG_02169":null,"SJAG_02392":null,"SJAG_03581":null,"SJAG_04509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bipolar cell growth","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"bipolar cell elongation","type":"narrow"},{"name":"bipolar growth","type":"broad"},{"name":"polar cell elongation","type":"related"}],"termid":"GO:0042815","terms_by_termid":{"GO:0042815":null,"GO:0051516":null,"GO:0051517":null,"GO:0051519":null}}


id: GO:2000314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of fibroblast growth factor receptor signaling pathway","termid":"GO:0040037"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation","termid":"GO:2000313"},{"relation_name":"negatively_regulates","term_name":"fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation","termid":"GO:0060825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation","synonyms":[{"name":"negative regulation of fibroblast growth factor receptor signalling pathway involved in neural plate anterior/posterior pattern formation","type":"exact"}],"termid":"GO:2000314"}


id: PBO:0078672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon TTT) 5-1","termid":"PBO:0078672"}


id: GO:1902064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any regulation of transcription from RNA polymerase II promoter that is involved in spermatogenesis.","definition_xrefs":["GOC:TermGenie","PMID:22570621","GOC:kmv"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter involved in spermatogenesis (obsolete GO:1902064)","synonyms":[{"name":"global transcription regulation from Pol II promoter involved in generation of spermatozoa","type":"related"},{"name":"global transcription regulation from Pol II promoter involved in spermatogenesis","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in generation of spermatozoa","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter involved in spermatogenesis","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in generation of spermatozoa","type":"related"},{"name":"regulation of global transcription from Pol II promoter involved in spermatogenesis","type":"related"},{"name":"regulation of transcription from Pol II promoter involved in generation of spermatozoa","type":"exact"},{"name":"regulation of transcription from Pol II promoter involved in spermatogenesis","type":"exact"},{"name":"regulation of transcription from RNA polymerase II promoter involved in generation of spermatozoa","type":"exact"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in generation of spermatozoa","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global involved in spermatogenesis","type":"related"}],"termid":"GO:1902064"}


id: PBO:0081930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger NFX1-type containing 1","termid":"PBO:0081930"}


id: PBO:0041209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic leucine zipper and W2 domains 1 pseudogene 1","termid":"PBO:0041209"}


id: MONDO:0100189
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A rare lipoprotein metabolism disorder characterized biochemically by complete absence of apolipoprotein AI and extremely low plasma high density lipoprotein (HDL) cholesterol, and clinically by corneal opacities and xanthomas complicated with premature coronary heart disease (CHD).","definition_xrefs":["Orphanet:425"],"gene_count":0,"genotype_count":0,"name":"obsolete apolipoprotein A-I deficiency (obsolete MONDO:0100189)","secondary_identifiers":["NANDO:2200605"],"synonyms":[{"name":"ApoA-I deficiency","type":"exact"},{"name":"familial apoA-I deficiency","type":"exact"},{"name":"familial hypoalphalipoproteinemia","type":"exact"}],"termid":"MONDO:0100189","xrefs":{"Monarch":{"xref_id":"0100189"}}}


id: MONDO:0014633
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An idiopathic generalized epilepsy characterized by onset of multiple seizure types in the first few years of life and associated with poor prognosis. Affected individuals have cognitive regression and intellectual disability and that has material basis in heterozygous mutation in the SLC6A1 gene on chromosome 3p25.","definition_xrefs":["DOID:0060475"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"inborn disorder of amino acid transport","termid":"MONDO:0019216"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"},{"relation_name":"is_a","term_name":"childhood-onset epilepsy syndrome with developmental and/or epileptic encephalopathy","termid":"MONDO:0800500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"epilepsy with myoclonic atonic seizures","secondary_identifiers":["ICD9:345.10","UMLS:C0393702","icd11.foundation:951920505","MEDGEN:98284","Orphanet:1942","SCTID:230421008","OMIM:616421","GARD:16108"],"synonyms":[{"name":"Doose syndrome","type":"exact"},{"name":"EMAS","type":"exact"},{"name":"EMAtS","type":"exact"},{"name":"MAE","type":"exact"},{"name":"Myoclonic Atonic Epilepsy","type":"exact"},{"name":"epilepsy with myoclonic atonic seizures","type":"exact"},{"name":"epilepsy with myoclonic-astatic seizures","type":"exact"},{"name":"epilepsy with myoclonic-atonic seizures","type":"exact"},{"name":"epilepsy with myoclono-astatic crisis","type":"related"},{"name":"myoclonic astatic epilepsy","type":"related"},{"name":"myoclonic atonic epilepsy","type":"exact"},{"name":"myoclonic-astatic epilepsy in early childhood","type":"exact"},{"name":"myoclonic-atonic epilepsy","type":"exact"}],"termid":"MONDO:0014633","xrefs":{"Monarch":{"xref_id":"0014633"}}}


id: GO:1900053
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of retinoic acid biosynthetic process.","definition_xrefs":["GOC:yaf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of hormone metabolic process","termid":"GO:0032351"},{"relation_name":"is_a","term_name":"negative regulation of isoprenoid metabolic process","termid":"GO:0045827"},{"relation_name":"is_a","term_name":"negative regulation of vitamin metabolic process","termid":"GO:0046137"},{"relation_name":"is_a","term_name":"negative regulation of lipid biosynthetic process","termid":"GO:0051055"},{"relation_name":"is_a","term_name":"regulation of retinoic acid biosynthetic process","termid":"GO:1900052"},{"relation_name":"negatively_regulates","term_name":"retinoic acid biosynthetic process","termid":"GO:0002138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006766"},{"rel_name":"regulates","termid":"GO:0006766"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281","GO:0006766"],"is_obsolete":false,"name":"negative regulation of retinoic acid biosynthetic process","synonyms":[{"name":"down regulation of retinoic acid anabolic process","type":"exact"},{"name":"down regulation of retinoic acid biosynthetic process","type":"related"},{"name":"down-regulation of retinoic acid anabolic process","type":"exact"},{"name":"down-regulation of retinoic acid biosynthetic process","type":"related"},{"name":"downregulation of retinoic acid anabolic process","type":"exact"},{"name":"downregulation of retinoic acid biosynthetic process","type":"related"},{"name":"inhibition of retinoic acid anabolic process","type":"exact"},{"name":"inhibition of retinoic acid biosynthetic process","type":"related"},{"name":"negative regulation of retinoic acid anabolic process","type":"exact"}],"termid":"GO:1900053"}


id: FYPO:0005841
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein transport along microtubules to the cortex of the cell tip is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein transport along microtubule to cell tip during vegetative growth","termid":"FYPO:0005828"},{"relation_name":"is_a","term_name":"normal protein localization to cell cortex of cell tip","termid":"FYPO:0006876"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000138","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal protein transport along microtubule to cell tip cortex during vegetative growth","secondary_identifiers":["FYPO:0005829"],"synonyms":[{"name":"normal protein movement along microtubule to cell tip cortex during vegetative growth","type":"exact"},{"name":"normal protein transport along microtubule to cell cortex of cell tip during vegetative growth","type":"exact"},{"name":"normal protein transport along microtubule to cell tip cortex during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005841"}


id: GO:0071063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required for an organism to receive sensory mechanical stimulus resulting from air flow, convert it to a molecular signal, and recognize and characterize the signal.","definition_xrefs":["GOC:mah","PMID:19279637"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception of mechanical stimulus","termid":"GO:0050954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sensory perception of wind","synonyms":[{"name":"perception of wind","type":"exact"},{"name":"sensory perception of air flow","type":"exact"}],"termid":"GO:0071063"}


id: PBO:0070268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, variant U1 small nuclear 2A","termid":"PBO:0070268"}


id: MONDO:0006915
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Diseases characterized by injury or dysfunction involving multiple peripheral nerves and nerve roots. The process may primarily affect myelin or nerve axons. Two of the more common demyelinating forms are acute inflammatory polyradiculopathy (guillain-barre syndrome) and polyradiculoneuropathy, chronic inflammatory demyelinating. Polyradiculoneuritis refers to inflammation of multiple peripheral nerves and spinal nerve roots.","definition_xrefs":["MESH:D011129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyneuropathy","termid":"MONDO:0001824"},{"relation_name":"is_a","term_name":"demyelinating disease","termid":"MONDO:0002562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244","MONDO:0005559"],"is_obsolete":false,"name":"polyradiculoneuropathy","secondary_identifiers":["DOID:4308","EFO:1001116","MEDGEN:46012","UMLS:C0032587","SCTID:128078004"],"termid":"MONDO:0006915","xrefs":{"Monarch":{"xref_id":"0006915"}}}


id: PBO:0077322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 60","termid":"PBO:0077322"}


id: SO:0001356
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Uridine_5_oxyacetic_acid is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uridine_five_oxyacetic_acid","secondary_identifiers":["RNAMOD:064"],"synonyms":[{"name":"cmo5U","type":"exact"},{"name":"uridine 5-oxyacetic acid","type":"exact"},{"name":"uridine five oxyacetic acid","type":"exact"}],"termid":"SO:0001356"}


id: PBO:0065804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB1C, member RAS oncogene family pseudogene","termid":"PBO:0065804"}


id: GO:0004037
data:
  {"annotated_genes":["SJAG_00035"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77044],"is_not":false,"summary":null,"term":"GO:0004037"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: allantoate + H2O = (S)-ureidoglycolate + urea.","definition_xrefs":["RHEA:11016","EC:3.5.3.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00035":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016810"],"is_obsolete":false,"name":"allantoicase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["KEGG_REACTION:R02422","MetaCyc:ALLANTOICASE-RXN"],"synonyms":[{"name":"allantoate amidinohydrolase activity","type":"related"},{"name":"allantoine amidinohydrolase activity","type":"exact"}],"termid":"GO:0004037","terms_by_termid":{"GO:0004037":null}}


id: MONDO:1011941
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ancon dwarfism, non-human animal","secondary_identifiers":["OMIA:000302"],"termid":"MONDO:1011941","xrefs":{"Monarch":{"xref_id":"1011941"}}}


id: SO:0001839
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A promoter element with consensus sequence GTGRGAA, bound by CSL (CBF1/RBP-JK/Suppressor of Hairless/LAG-1) transcription factors.","definition_xrefs":["PMID:19101542"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CSL_response_element","synonyms":[{"name":"CSL response element","type":"exact"}],"termid":"SO:0001839"}


id: GO:0072741
data:
  {"annotated_genes":["SJAG_04461","SJAG_00333","SJAG_03602","SJAG_02645","SJAG_04597","SJAG_04703","SJAG_00279","SJAG_02022"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97560],"is_not":false,"summary":null,"term":"GO:0072741"},{"annotations":[96296],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0140325"},{"annotations":[100343],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0120047"},{"annotations":[93016,107306],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071574"},{"annotations":[120673,94208],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904498"},{"annotations":[109917],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905391"}]},"cv_name":"biological_process","definition":"A cellular protein localization process in which a protein is transported to, or maintained at, the site of cell division.","definition_xrefs":["PMID:19756689","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization","termid":"GO:0008104"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_00333":null,"SJAG_02022":null,"SJAG_02645":null,"SJAG_03602":null,"SJAG_04461":null,"SJAG_04597":null,"SJAG_04703":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to cell division site","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"protein localisation to cell division site","type":"exact"}],"termid":"GO:0072741","terms_by_termid":{"GO:0071574":null,"GO:0072741":null,"GO:0120047":null,"GO:0140325":null,"GO:1904498":null,"GO:1905391":null}}


id: GO:1904139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of microglial cell migration.","definition_xrefs":["GOC:nc","PMID:19100238","GOC:TermGenie","GO_REF:0000058","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glial cell migration","termid":"GO:1903975"},{"relation_name":"is_a","term_name":"regulation of macrophage migration","termid":"GO:1905521"},{"relation_name":"regulates","term_name":"microglial cell migration","termid":"GO:1904124"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of microglial cell migration","termid":"GO:1904139"}


id: GO:0003044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulation of blood pressure mediated by biochemical signaling: hormonal, autocrine or paracrine.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of systemic arterial blood pressure","termid":"GO:0003073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of systemic arterial blood pressure mediated by a chemical signal","synonyms":[{"name":"blood pressure regulation mediated by a chemical signal","type":"exact"}],"termid":"GO:0003044"}


id: GO:1904352
data:
  {"annotated_genes":["SJAG_04990"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101309],"is_not":false,"summary":null,"term":"GO:1904352"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein catabolic process in the vacuole.","definition_xrefs":["GOC:TermGenie","GOC:BHF","GO_REF:0000058","GOC:rl","PMID:25635054"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein catabolic process","termid":"GO:0045732"},{"relation_name":"is_a","term_name":"regulation of protein catabolic process in the vacuole","termid":"GO:1904350"},{"relation_name":"positively_regulates","term_name":"protein catabolic process in the vacuole","termid":"GO:0007039"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04990":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0030163"},{"rel_name":"positively_regulates","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein catabolic process in the vacuole","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of protein catabolic process in the vacuole","type":"narrow"},{"name":"activation of vacuolar protein breakdown","type":"related"},{"name":"activation of vacuolar protein catabolic process","type":"related"},{"name":"activation of vacuolar protein catabolism","type":"related"},{"name":"activation of vacuolar protein degradation","type":"related"},{"name":"positive regulation of vacuolar protein breakdown","type":"related"},{"name":"positive regulation of vacuolar protein catabolic process","type":"related"},{"name":"positive regulation of vacuolar protein catabolism","type":"related"},{"name":"positive regulation of vacuolar protein degradation","type":"related"},{"name":"up regulation of protein catabolic process in the vacuole","type":"exact"},{"name":"up regulation of vacuolar protein breakdown","type":"related"},{"name":"up regulation of vacuolar protein catabolic process","type":"related"},{"name":"up regulation of vacuolar protein catabolism","type":"related"},{"name":"up regulation of vacuolar protein degradation","type":"related"},{"name":"up-regulation of protein catabolic process in the vacuole","type":"exact"},{"name":"up-regulation of vacuolar protein breakdown","type":"related"},{"name":"up-regulation of vacuolar protein catabolic process","type":"related"},{"name":"up-regulation of vacuolar protein catabolism","type":"related"},{"name":"up-regulation of vacuolar protein degradation","type":"related"},{"name":"upregulation of protein catabolic process in the vacuole","type":"exact"},{"name":"upregulation of vacuolar protein breakdown","type":"related"},{"name":"upregulation of vacuolar protein catabolic process","type":"related"},{"name":"upregulation of vacuolar protein catabolism","type":"related"},{"name":"upregulation of vacuolar protein degradation","type":"related"}],"termid":"GO:1904352","terms_by_termid":{"GO:1904352":null}}


id: GO:0102071
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 9,10-epoxy-18-hydroxystearate + H2O = 9,10,18-trihydroxystearate.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 9,10-epoxy-18-hydroxystearate hydrolase activity (obsolete GO:0102071)","termid":"GO:0102071"}


id: PBO:0055308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2735","termid":"PBO:0055308"}


id: MONDO:0001442
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A chronic mood disorder in which the symptoms are similar to, though milder than, those diagnosed in depression.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mood disorder","termid":"MONDO:0005371"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dysthymic disorder","secondary_identifiers":["UMLS:C0013415","icd11.foundation:810797047","ICD10CM:F34.1","SCTID:78667006","MESH:D019263","NCIT:C34562","EFO:0008623","ICD9:300.4","MEDGEN:8517","DOID:12139"],"synonyms":[{"name":"dysthymia","type":"exact"}],"termid":"MONDO:0001442","xrefs":{"Monarch":{"xref_id":"0001442"}}}


id: MONDO:0012536
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any osteogenesis imperfecta in which the cause of the disease is a mutation in the CRTAP gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteogenesis imperfecta and a reduction of bone mineral density.","termid":"MONDO:0800064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"osteogenesis imperfecta type 7","secondary_identifiers":["GARD:8701","MEDGEN:343981","DOID:0110337","OMIM:610682","SCTID:254111008","UMLS:C1853162"],"synonyms":[{"name":"CRTAP osteogenesis imperfecta","type":"exact"},{"name":"OI type 7","type":"related"},{"name":"OI type VII","type":"related"},{"name":"OI, type 7","type":"related"},{"name":"OI7","type":"exact"},{"name":"osteogenesis imperfecta caused by mutation in CRTAP","type":"exact"},{"name":"osteogenesis imperfecta type 7","type":"exact"},{"name":"osteogenesis imperfecta type VII","type":"exact"},{"name":"osteogenesis imperfecta, type 7","type":"related"},{"name":"osteogenesis imperfecta, type IIb","type":"related"},{"name":"osteogenesis imperfecta, type IIb, formerly","type":"related"},{"name":"osteogenesis imperfecta, type VII","type":"related"}],"termid":"MONDO:0012536","xrefs":{"Monarch":{"xref_id":"0012536"}}}


id: PBO:0086701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; may be involved in phosphatase regulation and/or generation of precursor metabolites and energy","termid":"PBO:0086701"}


id: SO:0001677
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A core promoter region of RNA polymerase III type 1 promoters.","definition_xrefs":["PMID:12381659"],"direct_ancestors":[{"relation_name":"is_a","term_name":"core_eukaryotic_promoter_element","termid":"SO:0001660"},{"relation_name":"part_of","term_name":"RNApol_III_promoter_type_1","termid":"SO:0000617"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intermediate_element","synonyms":[{"name":"IE","type":"exact"},{"name":"intermediate element","type":"related"}],"termid":"SO:0001677"}


id: MONDO:0957268
data:
  {"annotated_genes":["SJAG_02463","SJAG_01941"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88401,88402],"is_not":false,"summary":null,"term":"MONDO:0957268"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01941":null,"SJAG_02463":null},"genotype_count":0,"is_obsolete":false,"name":"hypersulfaturia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:620372","UMLS:C5830511","MEDGEN:1841147"],"termid":"MONDO:0957268","terms_by_termid":{"MONDO:0957268":null},"xrefs":{"Monarch":{"xref_id":"0957268"}}}


id: PBO:0109620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain Y-linked 14 pseudogene","termid":"PBO:0109620"}


id: PBO:0070361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 37","termid":"PBO:0070361"}


id: PBO:0089256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin/importin beta family nuclear import signal receptor Kap14","termid":"PBO:0089256"}


id: MONDO:0018210
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Alexander disease type II (AxD type II) is an astrogliopathy and a form of Alexander disease (AxD) characterized by ataxia, bulbar symptoms, spastic paraparesis, palatal myoclonus, and autonomic symptoms.","definition_xrefs":["Orphanet:363722"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Alexander disease","termid":"MONDO:0008752"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"Alexander disease type II","secondary_identifiers":["NANDO:1200556","MEDGEN:1842714","GARD:17573","UMLS:C5679914"],"synonyms":[{"name":"AxD type II","type":"exact"}],"termid":"MONDO:0018210","xrefs":{"Monarch":{"xref_id":"0018210"}}}


id: PBO:0071393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L30 pseudogene 16","termid":"PBO:0071393"}


id: MONDO:0019768
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Golabi-Ito-Hall syndrome is an X-linked intellectual disability syndrome (XLMR) characterized by intellectual deficiency, microcephaly and short stature. It belongs to the group of disorders collectively referred to as Renpenning syndrome.","definition_xrefs":["Orphanet:93947"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Renpenning syndrome","termid":"MONDO:0010653"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-linked intellectual disability, Golabi-Ito-hall type","secondary_identifiers":["UMLS:C5681614","GARD:19241","MEDGEN:1842639"],"termid":"MONDO:0019768","xrefs":{"Monarch":{"xref_id":"0019768"}}}


id: PR:Q9HE02
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- med13 gene.","definition_xrefs":["UniProtKB:Q9HE02","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator of RNA polymerase II transcription subunit 13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC589.02c","synonyms":[{"name":"Spom972h-med13","type":"exact"},{"name":"mediator complex subunit 13 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"suppressor of RNA polymerase B srb9 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9HE02"}


id: GO:1900532
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Negative regulation of cell proliferation during cellular hyperosmotic response.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of cell proliferation involved in cellular hyperosmotic response (obsolete GO:1900532)","synonyms":[{"name":"down regulation of cell proliferation of cellular HOG response","type":"exact"},{"name":"down regulation of cell proliferation of cellular hyperosmotic response","type":"exact"},{"name":"down regulation of cell proliferation of cellular hypertonic response","type":"exact"},{"name":"down regulation of cell proliferation of cellular response to hypertonicity","type":"exact"},{"name":"down-regulation of cell proliferation of cellular HOG response","type":"exact"},{"name":"down-regulation of cell proliferation of cellular hyperosmotic response","type":"exact"},{"name":"down-regulation of cell proliferation of cellular hypertonic response","type":"exact"},{"name":"down-regulation of cell proliferation of cellular response to hypertonicity","type":"exact"},{"name":"downregulation of cell proliferation of cellular HOG response","type":"exact"},{"name":"downregulation of cell proliferation of cellular hyperosmotic response","type":"exact"},{"name":"downregulation of cell proliferation of cellular hypertonic response","type":"exact"},{"name":"downregulation of cell proliferation of cellular response to hypertonicity","type":"exact"},{"name":"inhibition of cell proliferation of cellular HOG response","type":"narrow"},{"name":"inhibition of cell proliferation of cellular hyperosmotic response","type":"narrow"},{"name":"inhibition of cell proliferation of cellular hypertonic response","type":"narrow"},{"name":"inhibition of cell proliferation of cellular response to hypertonicity","type":"narrow"},{"name":"negative regulation of cell proliferation involved in cellular hyperosmotic response","type":"exact"},{"name":"negative regulation of cell proliferation of cellular HOG response","type":"exact"},{"name":"negative regulation of cell proliferation of cellular hyperosmotic response","type":"exact"},{"name":"negative regulation of cell proliferation of cellular hypertonic response","type":"exact"},{"name":"negative regulation of cell proliferation of cellular response to hypertonicity","type":"exact"}],"termid":"GO:1900532"}


id: SO:0000796
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"TE that has been modified in vitro, including insertion of DNA derived from a source other than the originating TE.","definition_xrefs":["FB:mc"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"clone","termid":"SO:0000151"},{"relation_name":"has_quality","term_name":"transgenic","termid":"SO:0000781"},{"relation_name":"is_a","term_name":"transposable_element","termid":"SO:0000101"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transgenic_transposable_element","synonyms":[{"name":"transgenic transposable element","type":"exact"}],"termid":"SO:0000796"}


id: MONDO:0043775
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Complete or severe weakness of the muscles of respiration. This condition may be associated with motor neuron diseases; peripheral nerve diseases; neuromuscular junction diseases; spinal cord diseases; injury to the phrenic nerve; and other disorders.","definition_xrefs":["MESH:D012133"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diaphragm disorder","termid":"MONDO:0005728"},{"relation_name":"is_a","term_name":"palsy","termid":"MONDO:0006496"},{"relation_name":"is_a","term_name":"respiratory failure","termid":"MONDO:0021113"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"respiratory paralysis","secondary_identifiers":["UMLS:C0035232","MEDGEN:19748","SCTID:64228003"],"synonyms":[{"name":"diaphragmatic paralysis","type":"related"},{"name":"muscle paralysis, respiratory","type":"related"},{"name":"muscle paralyzes, respiratory","type":"related"},{"name":"paralysis of diaphragm","type":"exact"},{"name":"paralysis, diaphragmatic","type":"related"},{"name":"paralysis, respiratory","type":"related"},{"name":"paralysis, respiratory muscle","type":"related"},{"name":"respiratory muscle paralysis","type":"related"}],"termid":"MONDO:0043775","xrefs":{"Monarch":{"xref_id":"0043775"}}}


id: PBO:0001753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T5orf172 family protein","termid":"PBO:0001753"}


id: PBO:0073514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH2 domain containing 7","termid":"PBO:0073514"}


id: PBO:0040415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting V0 subunit c","termid":"PBO:0040415"}


id: PBO:0074856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 44","termid":"PBO:0074856"}


id: PBO:0036055
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_mitotic_anaphase_B","termid":"PBO:0036055"}


id: PBO:0074550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA host gene 3","termid":"PBO:0074550"}


id: PBO:0082433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bridging factor involved in ER-associated protein degradation (ERAD); bridges the cytosolic Cdc48p-Npl1p-Ufd1p ATPase complex and the membrane associated Ssm4p and Hrd1p ubiquitin ligase complexes; contains a UBX (ubiquitin regulatory X) domain and a ubiquitin-associated (UBA) domain; redistributes from the ER to lipid droplets during the diauxic shift and stationary phase; required for the maintenance of lipid homeostasis; required for mitochondrial protein translocation-associated degradation","termid":"PBO:0082433"}


id: GO:0009685
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators.","definition_xrefs":["ISBN:0387969845"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diterpenoid metabolic process","termid":"GO:0016101"},{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"gibberellin metabolic process","synonyms":[{"name":"gibberellic acid metabolic process","type":"narrow"},{"name":"gibberellic acid metabolism","type":"narrow"},{"name":"gibberellin metabolism","type":"exact"}],"termid":"GO:0009685"}


id: PBO:0017831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZIP zinc transmembrane transporter Zrt2 (predicted)","termid":"PBO:0017831"}


id: GO:0048898
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the anterior lateral line system over time, from its formation to the mature structure. The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance.","definition_xrefs":["ISBN:0125296509","PMID:15018940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lateral line system development","termid":"GO:0048925"},{"relation_name":"part_of","term_name":"mechanosensory lateral line system development","termid":"GO:0048881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior lateral line system development","synonyms":[{"name":"ALL system development","type":"related"}],"termid":"GO:0048898"}


id: PBO:0112849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"asynchronous replication autosomal RNA 9-2","termid":"PBO:0112849"}


id: GO:0019139
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N6-dimethylallyladenine + acceptor + H2O = adenine + 3-methylbut-2-enal + reduced electron acceptor.","definition_xrefs":["EC:1.5.99.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors","termid":"GO:0016645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"cytokinin dehydrogenase activity","secondary_identifiers":["MetaCyc:1.5.99.12-RXN","GO:0046420","RHEA:13625"],"synonyms":[{"name":"6-N-dimethylallyladenine:acceptor oxidoreductase activity","type":"related"},{"name":"N6-dimethylallyladenine:(acceptor) oxidoreductase activity","type":"related"},{"name":"N6-dimethylallyladenine:acceptor oxidoreductase activity","type":"related"},{"name":"cytokinin oxidase activity","type":"related"}],"termid":"GO:0019139"}


id: GO:0018210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of peptidyl-threonine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-amino acid modification","termid":"GO:0018193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-threonine modification","termid":"GO:0018210"}


id: PBO:0045955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EGFLAM antisense RNA 2","termid":"PBO:0045955"}


id: GO:0018027
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The methylation of peptidyl-lysine to form peptidyl-N6,N6-dimethyl-L-lysine.","definition_xrefs":["RESID:AA0075"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-lysine methylation","termid":"GO:0018022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-lysine dimethylation","termid":"GO:0018027"}


id: PBO:0071439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 45","termid":"PBO:0071439"}


id: PBO:0068932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 175, pseudogene","termid":"PBO:0068932"}


id: GO:0048497
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the identity of a floral organ is maintained. Identity is considered to be the aggregate of characteristics by which a structure is recognized.","definition_xrefs":["PO:0025395","PMID:9090883","GOC:PO_curators","GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of plant organ identity","termid":"GO:0090700"},{"relation_name":"part_of","term_name":"floral organ development","termid":"GO:0048437"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of floral organ identity","termid":"GO:0048497"}


id: PBO:0052691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 15","termid":"PBO:0052691"}


id: GO:0004466
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a long-chain 2,3-saturated fatty acyl-CoA + H+ + oxidized [electron-transfer flavoprotein] = a long-chain (2E)-enoyl-CoA + reduced [electron-transfer flavoprotein]. A long-chain fatty acid has an aliphatic tail containing 13 to 22 carbons.","definition_xrefs":["RHEA:17721"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA dehydrogenase activity","termid":"GO:0003995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"long-chain fatty acyl-CoA dehydrogenase activity","secondary_identifiers":["EC:1.3.8.8","MetaCyc:LONG-CHAIN-ACYL-COA-DEHYDROGENASE-RXN"],"synonyms":[{"name":"long-chain acyl-coenzyme A dehydrogenase activity","type":"related"},{"name":"long-chain-acyl-CoA dehydrogenase activity","type":"exact"},{"name":"palmitoyl-CoA dehydrogenase activity","type":"narrow"},{"name":"palmitoyl-coenzyme A dehydrogenase activity","type":"narrow"}],"termid":"GO:0004466"}


id: MONDO:0010161
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tyrosinemia type 1 (HTI) is an inborn error of tyrosine catabolism caused by defective activity of fumarylacetoacetate hydrolase (FAH) and is characterized by progressive liver disease, renal tubular dysfunction, porphyria-like crises and a dramatic improvement in prognosis following treatment with nitisinone.","definition_xrefs":["Orphanet:882"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"excluded_subClassOf","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"},{"relation_name":"is_a","term_name":"tyrosinemia","termid":"MONDO:0004741"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"tyrosinemia type I","secondary_identifiers":["NANDO:2200468","NCIT:C98641","MEDGEN:75688","SCTID:410056006","NANDO:1200788","UMLS:C0268490","NORD:1811","OMIM:276700","DOID:0050726","GARD:2658","icd11.foundation:2029519782","MedDRA:10069462"],"synonyms":[{"name":"FAH deficiency","type":"exact"},{"name":"Fah deficiency","type":"related"},{"name":"TYRSN1","type":"related"},{"name":"Tyrosinemia Type 1","type":"exact"},{"name":"fumarylacetoacetase deficiency","type":"exact"},{"name":"fumarylacetoacetate hydrolase deficiency","type":"exact"},{"name":"hepatorenal tyrosinemia","type":"exact"},{"name":"type I tyrosinemia","type":"exact"},{"name":"tyrosinemia type 1","type":"related"},{"name":"tyrosinemia type I","type":"exact"},{"name":"tyrosinemia, type 1","type":"related"},{"name":"tyrosinemia, type I","type":"related"}],"termid":"MONDO:0010161","xrefs":{"Monarch":{"xref_id":"0010161"}}}


id: PBO:0079968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 6","termid":"PBO:0079968"}


id: GO:0002081
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The acrosomal membrane region that underlies the plasma membrane of the sperm. This membrane fuses with the sperm plasma membrane as part of the acrosome reaction.","definition_xrefs":["PMID:8936405","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle membrane","termid":"GO:0030659"},{"relation_name":"part_of","term_name":"acrosomal membrane","termid":"GO:0002080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0031410","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"outer acrosomal membrane","termid":"GO:0002081"}


id: MONDO:1012812
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Leukodystrophy that occurs in dogs due to a mutation in the TSEN54 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukodystrophy, dog","termid":"MONDO:1011005"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukodystrophy, TSEN54-related, dog","secondary_identifiers":["OMIA:002215-9615"],"termid":"MONDO:1012812","xrefs":{"Monarch":{"xref_id":"1012812"}}}


id: GO:0047629
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ADP + H2O = IDP + NH3.","definition_xrefs":["MetaCyc:ADP-DEAMINASE-RXN","EC:3.5.4.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenosine-phosphate deaminase activity","termid":"GO:0047623"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0016810","GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"ADP deaminase activity","secondary_identifiers":["RHEA:12741"],"synonyms":[{"name":"ADP aminohydrolase activity","type":"related"},{"name":"adenosine diphosphate deaminase activity","type":"related"},{"name":"adenosinepyrophosphate deaminase activity","type":"related"}],"termid":"GO:0047629"}


id: GO:0044800
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The membrane organization process that joins two lipid bilayers to form a single membrane, involving more than one organism.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism membrane fusion (obsolete GO:0044800)","termid":"GO:0044800"}


id: GO:0090444
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the consistent predetermined time point at which a nematode larva progresses from an initial condition to a later condition and the rate at which this time point is reached.","definition_xrefs":["PMID:17550772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of development, heterochronic","termid":"GO:0040034"},{"relation_name":"is_a","term_name":"regulation of nematode larval development","termid":"GO:0061062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of nematode larval development, heterochronic","termid":"GO:0090444"}


id: PBO:0073440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Scm like with four mbt domains 2","termid":"PBO:0073440"}


id: PBO:0065814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB3A interacting protein","termid":"PBO:0065814"}


id: GO:0006990
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The activation of genes whose promoters contain a specific sequence elements such as the unfolded protein response element (UPRE; consensus CAGCGTG) or the ER stress-response element (ERSE; CCAAN(N)9CCACG), as a result of signaling via the unfolded protein response.","definition_xrefs":["GOC:dph","GOC:mah","GOC:txnOH","GOC:tb","PMID:12042763"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response (obsolete GO:0006990)","synonyms":[{"name":"positive regulation of transcription of target genes involved in unfolded protein response","type":"exact"},{"name":"unfolded protein response, activation of target gene transcription","type":"narrow"},{"name":"unfolded protein response, positive regulation of target gene transcription","type":"exact"},{"name":"unfolded protein response, stimulation of target gene transcription","type":"narrow"},{"name":"unfolded protein response, target gene transcriptional activation","type":"broad"},{"name":"unfolded protein response, up regulation of target gene transcription","type":"exact"},{"name":"unfolded protein response, up-regulation of target gene transcription","type":"exact"},{"name":"unfolded protein response, upregulation of target gene transcription","type":"exact"}],"termid":"GO:0006990"}


id: SO:0000494
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A 9 nucleotide recombination site (e.g. ACAAAAACC), part of a 3' D-recombination signal sequence of an immunoglobulin/T-cell receptor gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"nonamer_of_recombination_feature_of_vertebrate_immune_system_gene","termid":"SO:0000562"},{"relation_name":"part_of","term_name":"three_prime_D_recombination_signal_sequence","termid":"SO:0000570"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_prime_D_nonamer","synonyms":[{"name":"3'D-NOMAMER","type":"exact"},{"name":"three prime D nonamer","type":"exact"}],"termid":"SO:0000494"}


id: GO:0043262
data:
  {"annotated_genes":["SJAG_03676"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[115956],"is_not":false,"summary":null,"term":"GO:0043262"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ADP + H2O = AMP + phosphate + H+.","definition_xrefs":["PMID:1470606","RHEA:61436"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside diphosphate phosphatase activity","termid":"GO:0017110"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03676":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"ADP phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-10862"],"synonyms":[{"name":"ADP diphosphatase activity","type":"broad"},{"name":"ADPase","type":"broad"},{"name":"ADPase activity","type":"related"},{"name":"ATP diphosphohydrolase activity","type":"related"},{"name":"ATP-diphosphatase activity","type":"related"},{"name":"adenosine diphosphatase activity","type":"related"},{"name":"adenosine-diphosphatase activity","type":"exact"}],"termid":"GO:0043262","terms_by_termid":{"GO:0043262":null}}


id: GO:0071006
data:
  {"annotated_genes":["SJAG_04783","SJAG_04898","SJAG_04117","SJAG_01315","SJAG_01504"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[62588,72610,75233,79266,79704],"is_not":false,"summary":null,"term":"GO:0071006"}]},"cv_name":"cellular_component","definition":"A spliceosomal complex that is formed by the displacement of the U1 and U4 snRNPs from the precatalytic spliceosome; the U2, U5 and U6 snRNPs remain associated with the mRNA. This complex, sometimes called the activated spliceosome, is the catalytically active form of the spliceosome, and includes many proteins in addition to those found in the U2, and U5 and U6 snRNPs.","definition_xrefs":["GOC:krc","GOC:ab","PMID:18322460","GOC:mah","ISBN:0879695897","ISBN:0879697393","PMID:19239890"],"direct_ancestors":[{"relation_name":"is_a","term_name":"U2-type spliceosomal complex","termid":"GO:0005684"},{"relation_name":"is_a","term_name":"catalytic step 1 spliceosome","termid":"GO:0071012"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01315":null,"SJAG_01504":null,"SJAG_04117":null,"SJAG_04783":null,"SJAG_04898":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"U2-type catalytic step 1 spliceosome","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000117":null},"synonyms":[{"name":"GT-AG catalytic step 1 spliceosome","type":"narrow"},{"name":"U2-type activated spliceosome","type":"exact"},{"name":"major catalytic step 1 spliceosome","type":"exact"},{"name":"mammalian U2-type spliceosomal complex B*","type":"narrow"},{"name":"mammalian U2-type spliceosomal complex B2","type":"narrow"},{"name":"yeast U2-type spliceosomal complex A1","type":"narrow"}],"termid":"GO:0071006","terms_by_termid":{"GO:0071006":null}}


id: GO:0072695
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of DNA recombination within the telomere.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA recombination","termid":"GO:0000018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006310"}],"interesting_parent_ids":["GO:0006310","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"regulation of DNA recombination at telomere","synonyms":[{"name":"regulation of telomeric recombination","type":"exact"}],"termid":"GO:0072695"}


id: PBO:0056806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major facilitator superfamily domain containing 3","termid":"PBO:0056806"}


id: PATO:0001951
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial pattern inhering in a bearer by virtue of the bearer's being in opposition round a common axis.","definition_xrefs":["ISBN:0881923214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spatial pattern","termid":"PATO:0000060"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"whorled","termid":"PATO:0001951"}


id: PBO:0030119
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_protein_level_during_cellular_response_to_hypoxia","termid":"PBO:0030119"}


id: PATO:0000350
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000350 electrolyte composition value (obsolete PATO:0000350)","termid":"PATO:0000350"}


id: PBO:0031395
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_endocytosis_during_vegetative_growth","termid":"PBO:0031395"}


id: MONDO:0100206
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lumbar disk degeneration, susceptibility to","secondary_identifiers":["MEDGEN:390827","UMLS:C2675551"],"termid":"MONDO:0100206","xrefs":{"Monarch":{"xref_id":"0100206"}}}


id: PBO:0073247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 1","termid":"PBO:0073247"}


id: PBO:0005783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate-CoA ligase beta subunit (predicted)","termid":"PBO:0005783"}


id: MONDO:0012021
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myopia","termid":"MONDO:0001384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"myopia 17, autosomal dominant","secondary_identifiers":["MEDGEN:854818","OMIM:608367","UMLS:C3888211"],"synonyms":[{"name":"MYP17","type":"exact"},{"name":"myopia 17, autosomal dominant","type":"exact"},{"name":"myopia 4","type":"related"},{"name":"myopia 4, formerly","type":"related"}],"termid":"MONDO:0012021","xrefs":{"Monarch":{"xref_id":"0012021"}}}


id: PBO:0114664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AMP-dependent synthetase/ligase domain/Fatty acyl-coenzyme A reductase-like, NAD-binding domain, implicated in fatty acid metabolism, or amino acid metabolism","termid":"PBO:0114664"}


id: MONDO:0026181
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete genetic renal or urinary tract malformation (obsolete MONDO:0026181)","secondary_identifiers":["Orphanet:183539"],"termid":"MONDO:0026181","xrefs":{"Monarch":{"xref_id":"0026181"}}}


id: MONDO:0008504
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"SupraValvar Aortic Stenosis (SVAS) is characterized by the narrowing of the aorta lumen (close to its origin) or other arteries (branch pulmonary arteries, coronary arteries). This narrowing of the aorta or pulmonary branches may impede blood flow, resulting in heart murmur and ventricular hypertrophy (in case of aorta involvement). The narrowing results from a thickening of the artery wall, which is not related to atherosclerosis.","definition_xrefs":["Orphanet:3193"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aortic valve stenosis","termid":"MONDO:0042981"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"supravalvular aortic stenosis","secondary_identifiers":["DOID:1929","MEDGEN:2001","UMLS:C0003499","NCIT:C85176","SCTID:268185002","MedDRA:10042598","GARD:743","OMIM:185500","HP:0004381","NANDO:2200285","icd11.foundation:1066595728"],"synonyms":[{"name":"SVAS","type":"exact"},{"name":"aortic supravalvular stenosis","type":"related"},{"name":"supra-valvular aortic stenosis","type":"exact"},{"name":"supravalvar aortic stenosis","type":"exact"},{"name":"supravalvar aortic stenosis, Eisenberg type","type":"related"},{"name":"supravalvular aortic stenosis","type":"exact"},{"name":"supravalvular aortic stenosis (disease)","type":"exact"}],"termid":"MONDO:0008504","xrefs":{"Monarch":{"xref_id":"0008504"}}}


id: PBO:0083187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the uncharacterized gene YFR011C; identified by expression profiling and mass spectrometry","termid":"PBO:0083187"}


id: PBO:0080845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Y-box binding protein 1 pseudogene 9","termid":"PBO:0080845"}


id: MONDO:0007370
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coracoclavicular joint, anomalous","secondary_identifiers":["MESH:C565161","OMIM:121350","MEDGEN:377706","UMLS:C1852561"],"synonyms":[{"name":"coracoclavicular joint, anomalous","type":"exact"}],"termid":"MONDO:0007370","xrefs":{"Monarch":{"xref_id":"0007370"}}}


id: PR:O74472
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug33 gene.","definition_xrefs":["UniProtKB:O74472","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 33 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1739.10","synonyms":[{"name":"Spom972h-mug33","type":"exact"}],"termid":"PR:O74472"}


id: PR:Q9P7Z4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC2A9.13 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7Z4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C2A9.13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2A9.13","synonyms":[{"name":"Spom972h-SPBC2A9.13","type":"exact"}],"termid":"PR:Q9P7Z4"}


id: GO:0045490
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues.","definition_xrefs":["PMID:11931668","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide catabolic process","termid":"GO:0000272"},{"relation_name":"is_a","term_name":"pectin metabolic process","termid":"GO:0045488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"pectin catabolic process","synonyms":[{"name":"pectin breakdown","type":"exact"},{"name":"pectin catabolism","type":"exact"},{"name":"pectin degradation","type":"exact"}],"termid":"GO:0045490"}


id: PBO:0049436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GUSB pseudogene 13","termid":"PBO:0049436"}


id: PBO:0083327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps ORF SRC1/YML034W","termid":"PBO:0083327"}


id: GO:0062009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of the secondary palate from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure. The secondary palate is the part of the palate formed from the fusion of the two palatine shelves, extensions of the maxillary prominences.","definition_xrefs":["PMID:28784960"],"direct_ancestors":[{"relation_name":"is_a","term_name":"roof of mouth development","termid":"GO:0060021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"secondary palate development","termid":"GO:0062009"}


id: GO:2001076
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of metanephric ureteric bud development.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"regulation of metanephric ureteric bud development","termid":"GO:2001074"},{"relation_name":"positively_regulates","term_name":"metanephric part of ureteric bud development","termid":"GO:0035502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of metanephric ureteric bud development","termid":"GO:2001076"}


id: PBO:0078850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily C member 5","termid":"PBO:0078850"}


id: PBO:0091798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-Pro dipeptidase","termid":"PBO:0091798"}


id: GO:0015186
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of L-glutamine from one side of a membrane to the other. L-glutamine is 2-amino-4-carbamoylbutanoic acid.","definition_xrefs":["GOC:ai","GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"neutral L-amino acid transmembrane transporter activity","termid":"GO:0015175"},{"relation_name":"is_a","term_name":"L-amino acid transmembrane transporter activity","termid":"GO:0015179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"L-glutamine transmembrane transporter activity","synonyms":[{"name":"asparagine/glutamine permease activity","type":"narrow"}],"termid":"GO:0015186"}


id: FYPO:0009015
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population phenotype in which a larger than normal proportion of cells is viable when grown with glycerol as carbon source. In High Throughput Phenotyping this is typically assessed using phloxine as a dye.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased vegetative cell population viability","termid":"FYPO:0009008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"increased cell population viability on glycerol carbon source","synonyms":[{"name":"increased cell population viability during vegetative growth on glycerol carbon source","type":"exact"}],"termid":"FYPO:0009015"}


id: PBO:0056402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAPT intronic transcript 1","termid":"PBO:0056402"}


id: PR:Q9P786
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylenetetrahydrofolate dehydrogenase [NAD(+)] (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1711.04","secondary_identifiers":["UniProtKB:Q9P786"],"synonyms":[{"name":"SPBC1711.04","type":"related"},{"name":"Spom972h-MTHFD2","type":"exact"}],"termid":"PR:Q9P786"}


id: GO:0072301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of metanephric glomerular mesangial cell proliferation.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glomerular mesangial cell proliferation","termid":"GO:0072124"},{"relation_name":"regulates","term_name":"metanephric glomerular mesangial cell proliferation involved in metanephros development","termid":"GO:0072262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of metanephric glomerular mesangial cell proliferation","termid":"GO:0072301"}


id: GO:0140730
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of amphiregulin due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels. Amphiregulin (AREG) is a ligand of the epidermal growth factor receptor (EGFR), a widely expressed transmembrane tyrosine kinase. AREG is synthesized as a membrane-anchored precursor protein that can engage in juxtacrine signaling on adjacent cells. Alternatively, after proteolytic processing by cell membrane proteases, mainly TACE/ADAM17, AREG is secreted and behaves as an autocrine or paracrine factor.","definition_xrefs":["PMID:24463227"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"amphiregulin production","synonyms":[{"name":"AREG production","type":"broad"}],"termid":"GO:0140730"}


id: PBO:0054114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1479","termid":"PBO:0054114"}


id: PBO:0049366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTF2I repeat domain containing 1 pseudogene 1","termid":"PBO:0049366"}


id: MONDO:0017741
data:
  {"annotated_genes":["SJAG_03188","SJAG_01491","SJAG_04053","SJAG_04316"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87020],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012248"},{"annotations":[88503,88502],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013162"},{"annotations":[87771],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014142"},{"annotations":[87677,87678,87676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009364"},{"annotations":[87764],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014140"},{"annotations":[88497,88496],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013154"},{"annotations":[88501],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013159"},{"annotations":[87769],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014141"},{"annotations":[88499,88500],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013160"}]},"cv_name":"mondo","definition":"A disease that has its basis in the disruption of protein O-linked glycosylation.","definition_xrefs":["MONDO:patterns/basis_in_disruption_of_process"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation","termid":"MONDO:0015286"},{"relation_name":"is_a","term_name":"glycoprotein metabolism disease","termid":"MONDO:0045010"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01491":null,"SJAG_03188":null,"SJAG_04053":null,"SJAG_04316":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0024322"],"is_obsolete":false,"name":"disorder of protein O-glycosylation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:309447","UMLS:C5681041","GARD:21336","icd11.foundation:1883085871","MEDGEN:1842631"],"synonyms":[{"name":"disorder of protein O-linked glycosylation","type":"exact"},{"name":"protein O-linked glycosylation disease","type":"exact"}],"termid":"MONDO:0017741","terms_by_termid":{"MONDO:0009364":null,"MONDO:0012248":null,"MONDO:0013154":null,"MONDO:0013159":null,"MONDO:0013160":null,"MONDO:0013162":null,"MONDO:0014140":null,"MONDO:0014141":null,"MONDO:0014142":null},"xrefs":{"Monarch":{"xref_id":"0017741"}}}


id: PBO:0059243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L14","termid":"PBO:0059243"}


id: PBO:0028864
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_pre-mRNA_level","termid":"PBO:0028864"}


id: MONDO:0006891
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A simple partial seizure consisting of clonus or spasm of a muscle or muscle group; it may be single or in a continuous and repetitive series or may spread to adjacent muscles.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"focal epilepsy","termid":"MONDO:0005384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"partial motor epilepsy","secondary_identifiers":["UMLS:C0016399","EFO:1001089","MESH:D020938","MEDGEN:5237","DOID:3327","ICD9:780.39","SCTID:128612007"],"synonyms":[{"name":"epilepsy, focal motor","type":"exact"},{"name":"focal motor seizure","type":"exact"}],"termid":"MONDO:0006891","xrefs":{"Monarch":{"xref_id":"0006891"}}}


id: GO:0050350
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3 malonyl-CoA + 4-coumaroyl-CoA = 4 CoA + 3,4',5-trihydroxy-stilbene + 4 CO2.","definition_xrefs":["EC:2.3.1.95"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016746"],"is_obsolete":false,"name":"trihydroxystilbene synthase activity","secondary_identifiers":["RHEA:11936","MetaCyc:RXN-87"],"synonyms":[{"name":"malonyl-CoA:4-coumaroyl-CoA malonyltransferase (cyclizing)","type":"broad"},{"name":"resveratrol synthase activity","type":"related"},{"name":"stilbene synthase activity","type":"broad"}],"termid":"GO:0050350"}


id: PBO:0117253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TORC1 inhibitor, Ecl3","termid":"PBO:0117253"}


id: PBO:0066432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RERG like","termid":"PBO:0066432"}


id: GO:1905904
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mesoderm formation.","definition_xrefs":["GOC:rph","GOC:BHF","PMID:23939491","GOC:TermGenie","GO_REF:0000058","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mesoderm formation","termid":"GO:1905902"},{"relation_name":"is_a","term_name":"positive regulation of mesoderm development","termid":"GO:2000382"},{"relation_name":"positively_regulates","term_name":"mesoderm formation","termid":"GO:0001707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mesoderm formation","synonyms":[{"name":"activation of mesoderm formation","type":"narrow"},{"name":"up regulation of mesoderm formation","type":"exact"},{"name":"up-regulation of mesoderm formation","type":"exact"},{"name":"upregulation of mesoderm formation","type":"exact"}],"termid":"GO:1905904"}


id: FYPO:0009114
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the mitotic spindle remains monopolar when formed, with microtubules emanating from only one pole, for longer than wild-type, but eventually reaches bipolarity.","definition_xrefs":["PMID:25057016"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monopolar mitotic spindle","termid":"FYPO:0000276"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000337"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000002","FYPO:0000337","FYPO:0005447","FYPO:0002399","FYPO:0000641","FYPO:0000054","FYPO:0001985","FYPO:0000120","FYPO:0001320"],"is_obsolete":false,"name":"transient monopolar mitotic spindle","synonyms":[{"name":"monopolar mitotic spindle that eventually reaches bipolarity","type":"exact"},{"name":"temporary monopolar mitotic spindle","type":"exact"}],"termid":"FYPO:0009114"}


id: GO:0033963
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: 5,6alpha-epoxy-5alpha-cholestan-3beta-ol + H2O = cholestane-3beta-5alpha,6beta-triol, and 5,6beta-epoxy-5beta-cholestan-3beta-ol + H2O = cholestane-3beta-5alpha,6beta-triol.","definition_xrefs":["EC:3.3.2.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ether hydrolase activity","termid":"GO:0016803"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"cholesterol-5,6-oxide hydrolase activity","synonyms":[{"name":"5,6alpha-epoxy-5alpha-cholestan-3beta-ol hydrolase activity","type":"related"},{"name":"ChEH","type":"related"},{"name":"cholesterol-epoxide hydrolase activity","type":"related"}],"termid":"GO:0033963"}


id: PBO:0036445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E1 Atg8 and Atg12 E1 activating enzyme Atg7","termid":"PBO:0036445"}


id: GO:2000412
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of thymocyte migration.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of T cell migration","termid":"GO:2000406"},{"relation_name":"is_a","term_name":"regulation of thymocyte migration","termid":"GO:2000410"},{"relation_name":"positively_regulates","term_name":"thymocyte migration","termid":"GO:0072679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of thymocyte migration","synonyms":[{"name":"positive regulation of immature T cell migration","type":"related"},{"name":"positive regulation of immature T lymphocyte migration","type":"related"},{"name":"positive regulation of immature T-cell migration","type":"related"},{"name":"positive regulation of immature T-lymphocyte migration","type":"related"},{"name":"positive regulation of thymic lymphocyte migration","type":"exact"}],"termid":"GO:2000412"}


id: PBO:0044005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"casein alpha s1","termid":"PBO:0044005"}


id: GO:0005343
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: organic acid(out) + Na+(out) = organic acid(in) + Na+(in).","definition_xrefs":["TC:2.A.28.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic acid transmembrane transporter activity","termid":"GO:0005342"},{"relation_name":"is_a","term_name":"solute:sodium symporter activity","termid":"GO:0015370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"organic acid:sodium symporter activity","secondary_identifiers":["Reactome:R-HSA-8876312"],"synonyms":[{"name":"sodium/chloride-dependent organic acid cotransporter activity","type":"related"},{"name":"sodium:dicarboxylate/tricarboxylate symporter activity","type":"narrow"}],"termid":"GO:0005343"}


id: PBO:0042266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin containing TCP1 subunit 6 pseudogene 1","termid":"PBO:0042266"}


id: PBO:0013822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mago Nashi interacting protein Mni1 (predicted)","termid":"PBO:0013822"}


id: PBO:0071541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 6","termid":"PBO:0071541"}


id: PBO:0031512
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_mating_efficiency","termid":"PBO:0031512"}


id: MONDO:0019871
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Distal trisomy 2p is a rare chromosomal anomaly syndrome, resulting from the partial duplication of the short arm of chromosome 2, with a highly variable phenotype principally characterized by pre- and post-natal growth failure, global developmental delay, facial dysmorphism (incl. high forehead/frontal bossing, abnormal ear shape and/or position, hypertelorism/telecanthus, broad/depressed nasal bridge) and ocular anomalies (e.g. exophthalmos, retinal hypopigmentation, optic nerve and foveal hypoplasia). Other reported anomalies include generalized hypotonia, pectus excavatum, long fingers and toes, syndactyly, congenital heart (e.g. ventricular and atrial septal defects) and neural tube defects, seizures, pulmonary hypoplasia, diaphragmatic hernia and urogenital anomalies.","definition_xrefs":["Orphanet:96070"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete chromosomal anomaly with cataract (obsolete MONDO:0020226)","termid":"MONDO:0020226"},{"relation_name":"is_a","term_name":"partial duplication of the short arm of chromosome 2","termid":"MONDO:0016939"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"distal trisomy 2p","secondary_identifiers":["UMLS:C4706937","MEDGEN:1646233","GARD:19304","SCTID:764518004"],"synonyms":[{"name":"distal duplication 2p","type":"exact"},{"name":"distal trisomy type 2p","type":"exact"},{"name":"telomeric duplication 2p","type":"exact"},{"name":"trisomy 2pter","type":"exact"}],"termid":"MONDO:0019871","xrefs":{"Monarch":{"xref_id":"0019871"}}}


id: PBO:0031120
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_spontaneous_diploidization","termid":"PBO:0031120"}


id: PBO:0067090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 126, pseudogene","termid":"PBO:0067090"}


id: PBO:0042341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD79a molecule","termid":"PBO:0042341"}


id: GO:0060105
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A lipid-containing layer of cuticle that lies between the cortical layer and the surface coat. An example of this component is found in Caenorhabditis elegans.","definition_xrefs":["ISSN:15518507","GOC:dph","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cuticular extracellular matrix","termid":"GO:0060102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"epicuticle of collagen and cuticulin-based cuticle extracellular matrix","synonyms":[{"name":"epicuticle of collagen and cuticulin-based exoskeleton extracellular matrix","type":"related"}],"termid":"GO:0060105"}


id: MONDO:0044204
data:
  {"annotated_genes":["SJAG_00487","SJAG_04491","SJAG_03684","SJAG_04991"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88076,88077,88078,88079],"is_not":false,"summary":null,"term":"MONDO:0044204"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Shwachman-Diamond syndrome","termid":"MONDO:0009833"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00487":null,"SJAG_03684":null,"SJAG_04491":null,"SJAG_04991":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Shwachman-Diamond syndrome 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:260400","UMLS:C4692625","GARD:15221","MEDGEN:1640046"],"synonyms":[{"name":"SDS1","type":"related"},{"name":"Shwachman-Bodian syndrome","type":"related"},{"name":"Shwachman-Diamond syndrome","type":"related"},{"name":"Shwachman-Diamond syndrome 1","type":"exact"},{"name":"lipomatosis of pancreas, congenital","type":"related"},{"name":"pancreatic insufficiency and bone marrow dysfunction","type":"related"}],"termid":"MONDO:0044204","terms_by_termid":{"MONDO:0044204":null},"xrefs":{"Monarch":{"xref_id":"0044204"}}}


id: PBO:0002396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial splicing suppressor Mss51 (predicted)","termid":"PBO:0002396"}


id: GO:0140159
data:
  {"annotated_genes":["SJAG_01183"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112946],"is_not":false,"summary":null,"term":"GO:0140159"}]},"cv_name":"biological_process","definition":"The directed movement of borate from inside of a cell, across the plasma membrane and into the extracellular region.","definition_xrefs":["GOC:vw","PMID:17459946"],"direct_ancestors":[{"relation_name":"is_a","term_name":"borate transmembrane transport","termid":"GO:0035445"},{"relation_name":"is_a","term_name":"export across plasma membrane","termid":"GO:0140115"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01183":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"borate export across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140159","terms_by_termid":{"GO:0140159":null}}


id: PBO:0058915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 12133","termid":"PBO:0058915"}


id: FYPO:0004931
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell during sporulation is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level","termid":"FYPO:0000840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal RNA level during sporulation","synonyms":[{"name":"normal RNA accumulation during sporulation","type":"related"},{"name":"normal cellular RNA level during sporulation","type":"exact"},{"name":"normal mRNA level during sporulation","type":"narrow"},{"name":"normal transcript level during sporulation","type":"exact"}],"termid":"FYPO:0004931"}


id: MONDO:1010719
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hyperphosphatemia that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperphosphatemia, non-human animal","termid":"MONDO:1010110"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperphosphatemia, cattle","secondary_identifiers":["OMIA:002052-9913"],"termid":"MONDO:1010719","xrefs":{"Monarch":{"xref_id":"1010719"}}}


id: PBO:0013027
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is not functionally complemented by S. cerevisiae CMD1","termid":"PBO:0013027"}


id: PBO:0055621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3060","termid":"PBO:0055621"}


id: GO:0030036
data:
  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id: GO:0140668
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of production of oxytocin.","definition_xrefs":["PMID:25096581"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of gene expression","termid":"GO:0010628"},{"relation_name":"is_a","term_name":"regulation of oxytocin production","termid":"GO:0140667"},{"relation_name":"positively_regulates","term_name":"oxytocin production","termid":"GO:0036162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of oxytocin production","termid":"GO:0140668"}


id: PBO:0042645
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain Y-linked 20 pseudogene","termid":"PBO:0042645"}


id: PBO:0042788
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 162","termid":"PBO:0042788"}


id: MONDO:0000532
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lung combined type small cell carcinoma that has material basis in epithelial tissue of glandular origin.","definition_xrefs":["DOID:0050917"],"direct_ancestors":[{"relation_name":"is_a","term_name":"combined small cell lung carcinoma","termid":"MONDO:0003438"},{"relation_name":"is_a","term_name":"lung adenocarcinoma","termid":"MONDO:0005061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"lung combined type small cell adenocarcinoma","secondary_identifiers":["MEDGEN:231029","NCIT:C9379","UMLS:C1332165"],"termid":"MONDO:0000532","xrefs":{"Monarch":{"xref_id":"0000532"}}}


id: PBO:0048468
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glial cells missing transcription factor 1","termid":"PBO:0048468"}


id: GO:0141166
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that chemically modifies 5-methylcytosine (5meC) to make it a substrate for the base excision repair pathway, which then restores the unmodified cytosine.","definition_xrefs":["PMID:36478523","PMID:21862972","PMID:31546611"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolic process","termid":"GO:0006259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006259"],"is_obsolete":false,"name":"chromosomal 5-methylcytosine DNA demethylation pathway","synonyms":[{"name":"epigenetic 5-methylcytosine DNA demethylation","type":"related"},{"name":"epigenetic 5-methylcytosine DNA demethylation pathway","type":"related"},{"name":"epigenetic DNA demethylation","type":"related"}],"termid":"GO:0141166"}


id: PBO:0030045
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_transcription_during_iron_starvation","termid":"PBO:0030045"}


id: GO:0004555
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  {"annotated_genes":["SJAG_04859"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73236],"is_not":false,"summary":null,"term":"GO:0004555"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha,alpha-trehalose + H2O = 2 D-glucose.","definition_xrefs":["RHEA:32675","PMID:19897915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trehalase activity","termid":"GO:0015927"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04859":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016798","GO:0016787"],"is_obsolete":false,"name":"alpha,alpha-trehalase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-188985","EC:3.2.1.28","MetaCyc:TREHALA-RXN"],"synonyms":[{"name":"alpha,alpha-trehalose glucohydrolase activity","type":"related"}],"termid":"GO:0004555","terms_by_termid":{"GO:0004555":null}}


id: RO:0008504
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  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of kleptoparasite of","direct_ancestors":[{"relation_name":"is_a","term_name":"parasitized_by","termid":"RO:0002445"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kleptoparasitized_by","termid":"RO:0008504"}


id: PBO:0088793
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Erd1 homolog","termid":"PBO:0088793"}


id: FYPO:0002601
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H2A phosphorylation is normal. All histone H2A phosphorylation may be assayed, or phosphorylation of specific sites on histone H2A may be measured.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone phosphorylation during vegetative growth","termid":"FYPO:0002595"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal histone H2A phosphorylation during vegetative growth","synonyms":[{"name":"normal histone H2A phosphorylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002601"}


id: GO:0000087
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cell cycle phase during which nuclear division occurs, and which is comprises the phases: prophase, metaphase, anaphase and telophase and occurs as part of a mitotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"M phase","termid":"GO:0000279"},{"relation_name":"is_a","term_name":"mitotic cell cycle phase","termid":"GO:0098763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mitotic M phase","secondary_identifiers":["Reactome:R-HSA-68886"],"synonyms":[{"name":"M phase of mitotic cell cycle","type":"exact"},{"name":"M-phase of mitotic cell cycle","type":"exact"}],"termid":"GO:0000087"}


id: PR:Q9UQW6
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An acetyl-CoA acetyltransferase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR18919:SF7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetyl-CoA acetyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC215.09c","secondary_identifiers":["UniProtKB:Q9UQW6"],"synonyms":[{"name":"SPBC215.09c","type":"related"},{"name":"Spom972h-ACAT1","type":"exact"},{"name":"acetoacetyl-CoA thiolase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ergosterol biosynthesis protein 10 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UQW6"}


id: PBO:0058682
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6810","termid":"PBO:0058682"}


id: GO:0071504
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id: PBO:0043737
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6C pseudogene 16","termid":"PBO:0043737"}


id: GO:0140936
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A histone deubiquitinase that cleaves ubiquitin from a histone H2B protein to which it is conjugated.","definition_xrefs":["PMID:18206972","PMID:29352077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone deubiquitinase activity","termid":"GO:0140934"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0008233","GO:0003674","GO:0140096","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"histone H2B deubiquitinase activity","synonyms":[{"name":"histone H2B deubiquitination","type":"related"}],"termid":"GO:0140936"}


id: GO:0051979
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of O-acetyl ester groups to alginic acid, a linear polymer of D-mannuronate and L-guluronate.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alginic acid metabolic process","termid":"GO:0042120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"alginic acid acetylation","synonyms":[{"name":"alginate acetylation","type":"exact"}],"termid":"GO:0051979"}


id: PBO:0083584
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; transcription of both YLL044W and the overlapping gene RPL8B is reduced in the gcr1 null mutant","termid":"PBO:0083584"}


id: PBO:0001697
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar calcium transporting P-type ATPase P2 type, Pmc1","termid":"PBO:0001697"}


id: FYPO:0007847
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the meiotic spindle is longer than normal during meiosis I.","definition_xrefs":["PomBase:mah","PMID:34346498"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long meiotic spindle","termid":"FYPO:0000736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002399"}],"interesting_parent_ids":["FYPO:0000120","FYPO:0000054","FYPO:0000002","FYPO:0002399","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"long meiosis I spindle","synonyms":[{"name":"elongated meiosis I spindle","type":"exact"},{"name":"long spindle during first meiotic nuclear division","type":"exact"},{"name":"long spindle during meiosis I","type":"exact"}],"termid":"FYPO:0007847"}


id: PBO:0029911
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id: PBO:0088115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuolar ATPase V0 domain subunit c'; involved in proton transport activity; hydrophobic integral membrane protein (proteolipid) containing four transmembrane segments; N and C termini are in the vacuolar lumen","termid":"PBO:0088115"}


id: PBO:0025525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein Hsp104","termid":"PBO:0025525"}


id: GO:0004504
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: peptidyl-glycine + ascorbate + O2 = peptidyl(2-hydroxyglycine) + dehydroascorbate + H2O.","definition_xrefs":["EC:1.14.17.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen","termid":"GO:0016715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"peptidylglycine monooxygenase activity","secondary_identifiers":["RHEA:21452","MetaCyc:PEPTIDYLGLYCINE-MONOOXYGENASE-RXN"],"synonyms":[{"name":"PAM activity","type":"related"},{"name":"PAM-A","type":"related"},{"name":"PAM-B","type":"related"},{"name":"peptide alpha-amidating enzyme","type":"related"},{"name":"peptide alpha-amide synthase activity","type":"related"},{"name":"peptide-alpha-amide synthetase activity","type":"related"},{"name":"peptidyl alpha-amidating enzyme activity","type":"related"},{"name":"peptidylglycine 2-hydroxylase activity","type":"exact"},{"name":"peptidylglycine alpha-amidating monooxygenase activity","type":"related"},{"name":"peptidylglycine alpha-hydroxylase activity","type":"related"},{"name":"peptidylglycine,ascorbate:oxygen oxidoreductase (2-hydroxylating)","type":"related"},{"name":"synthase, peptide alpha-amide","type":"related"}],"termid":"GO:0004504"}


id: SO:0001180
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A cis-acting element found in the 3' UTR of some mRNA which is rich in AUUUA pentamers. Messenger RNAs bearing multiple AU-rich elements are often unstable.","definition_xrefs":["PMID:7892223"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UTR_region","termid":"SO:0000837"},{"relation_name":"part_of","term_name":"three_prime_UTR","termid":"SO:0000205"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AU_rich_element","secondary_identifiers":["http://en.wikipedia.org/wiki/AU-rich_element"],"synonyms":[{"name":"ARE","type":"related"},{"name":"AU rich element","type":"exact"},{"name":"AU-rich element","type":"exact"}],"termid":"SO:0001180"}


id: PBO:0058274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4651","termid":"PBO:0058274"}


id: PBO:0084591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a discrete protein; YFL043C was originally annotated as an independent ORF, but as a result of a sequence change, it was merged with an adjacent ORF into a single reading frame, designated YFL042C","termid":"PBO:0084591"}


id: PBO:0056657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 24","termid":"PBO:0056657"}


id: GO:0008784
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-alanine = D-alanine.","definition_xrefs":["EC:5.1.1.1","RHEA:20249"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid racemase activity","termid":"GO:0047661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"alanine racemase activity","secondary_identifiers":["MetaCyc:ALARACECAT-RXN","KEGG_REACTION:R00401"],"synonyms":[{"name":"L-alanine racemase activity","type":"related"}],"termid":"GO:0008784"}


