# terms

id: PBO:0028971
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-excess_Golgi_cisternae_present","termid":"PBO:0028971"}


id: PBO:0070366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY5 pseudogene 4","termid":"PBO:0070366"}


id: MONDO:0014653
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any retinitis pigmentosa in which the cause of the disease is a mutation in the ZNF408 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736","MONDO:0005328"],"is_obsolete":false,"name":"retinitis pigmentosa 72","secondary_identifiers":["MEDGEN:895867","OMIM:616469","ICD10CM:H35.5","DOID:0110395","GARD:16119","UMLS:C4225315"],"synonyms":[{"name":"RP72","type":"exact"},{"name":"ZNF408 retinitis pigmentosa","type":"exact"},{"name":"retinitis pigmentosa 72","type":"exact"},{"name":"retinitis pigmentosa caused by mutation in ZNF408","type":"exact"},{"name":"retinitis pigmentosa type 72","type":"exact"}],"termid":"MONDO:0014653","xrefs":{"Monarch":{"xref_id":"0014653"}}}


id: GO:0051339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of lyase activity, the catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of lyase activity (obsolete GO:0051339)","synonyms":[{"name":"lyase regulator","type":"exact"}],"termid":"GO:0051339"}


id: PBO:0063938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PIMREG pseudogene 3","termid":"PBO:0063938"}


id: GO:0015274
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a chloride ion by a voltage-gated channel. The membrane is an organellar membrane.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated chloride channel activity","termid":"GO:0005247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"organellar voltage-gated chloride channel activity","synonyms":[{"name":"organellar voltage gated chloride channel activity","type":"exact"},{"name":"organellar voltage-dependent chloride channel activity","type":"exact"}],"termid":"GO:0015274"}


id: GO:0006571
data:
  {"annotated_genes":["SJAG_03312","SJAG_04652"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78443,80527],"is_not":false,"summary":null,"term":"GO:0006571"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tyrosine metabolic process","termid":"GO:0006570"},{"relation_name":"is_a","term_name":"aromatic amino acid family biosynthetic process, prephenate pathway","termid":"GO:0009095"},{"relation_name":"is_a","term_name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process","termid":"GO:1902223"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03312":null,"SJAG_04652":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"tyrosine biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"tyrosine anabolism","type":"exact"},{"name":"tyrosine biosynthesis","type":"exact"},{"name":"tyrosine formation","type":"exact"},{"name":"tyrosine synthesis","type":"exact"}],"termid":"GO:0006571","terms_by_termid":{"GO:0006571":null}}


id: PBO:0069986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1281, pseudogene","termid":"PBO:0069986"}


id: PBO:0065949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD17 checkpoint clamp loader component","termid":"PBO:0065949"}


id: MONDO:0010352
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic X-linked intellectual disability","termid":"MONDO:0019181"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intellectual disability, X-linked 82","secondary_identifiers":["DOID:0112052","GARD:22681","MEDGEN:337201","UMLS:C1845286","OMIM:300518","MESH:C564496"],"synonyms":[{"name":"MRX82","type":"exact"},{"name":"intellectual disability, X-linked 82","type":"exact"},{"name":"mental retardation, X-linked 82","type":"related"},{"name":"mental retardation, X-linked 82, X-linked recessive","type":"exact"}],"termid":"MONDO:0010352","xrefs":{"Monarch":{"xref_id":"0010352"}}}


id: GO:0070452
data:
  {"annotated_genes":["SJAG_04018"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111827],"is_not":false,"summary":null,"term":"GO:0070452"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of ergosterol.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ergosterol biosynthetic process","termid":"GO:0032443"},{"relation_name":"is_a","term_name":"positive regulation of sterol biosynthetic process","termid":"GO:0106120"},{"relation_name":"is_a","term_name":"positive regulation of alcohol biosynthetic process","termid":"GO:1902932"},{"relation_name":"positively_regulates","term_name":"ergosterol biosynthetic process","termid":"GO:0006696"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"positive regulation of ergosterol biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of ergosterol biosynthetic process","type":"narrow"},{"name":"positive regulation of ergosterol anabolism","type":"exact"},{"name":"positive regulation of ergosterol biosynthesis","type":"exact"},{"name":"positive regulation of ergosterol formation","type":"exact"},{"name":"positive regulation of ergosterol synthesis","type":"exact"},{"name":"stimulation of ergosterol biosynthetic process","type":"narrow"},{"name":"up regulation of ergosterol biosynthetic process","type":"exact"},{"name":"up-regulation of ergosterol biosynthetic process","type":"exact"},{"name":"upregulation of ergosterol biosynthetic process","type":"exact"}],"termid":"GO:0070452","terms_by_termid":{"GO:0070452":null}}


id: PBO:0069944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1237, pseudogene","termid":"PBO:0069944"}


id: FYPO:0005553
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of single-stranded telomeric DNA binding by a gene product is normal (i.e. indistinguishable from wild type). The relevant gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal single-stranded DNA binding","termid":"FYPO:0004384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000653"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000653","FYPO:0000652"],"is_obsolete":false,"name":"normal single-stranded telomeric DNA binding","synonyms":[{"name":"normal ssDNA telomeric binding","type":"exact"}],"termid":"FYPO:0005553"}


id: GO:0031094
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A network of membrane-bounded compartments found in blood platelets, where they regulate platelet activation by sequestering or releasing calcium. The dense tubular network exists as thin elongated membranes in resting platelets, and undergoes a major ultrastructural change, to a rounded vesicular form, upon addition of thrombin.","definition_xrefs":["PMID:1322202"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"platelet dense tubular network","termid":"GO:0031094"}


id: GO:0043696
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a specialized structure (cell, tissue or organ) loses structural or functional features that characterize it in the mature organism, or some other relatively stable phase of the organism's life history. Under certain conditions, these structures can revert back to the features of their ancestors.","definition_xrefs":["GOC:pg","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process","termid":"GO:0032502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dedifferentiation","secondary_identifiers":["Wikipedia:Cellular_differentiation#Dedifferentiation"],"termid":"GO:0043696"}


id: PBO:0065291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paired related homeobox 1","termid":"PBO:0065291"}


id: PBO:0001777
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by P. carnii Brl1","termid":"PBO:0001777"}


id: GO:0090592
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Synthesis of DNA that is a part of the process of duplicating one or more molecules of DNA.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA biosynthetic process","termid":"GO:0071897"},{"relation_name":"part_of","term_name":"DNA replication","termid":"GO:0006260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"part_of","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006260","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"DNA synthesis involved in DNA replication","termid":"GO:0090592"}


id: GO:0071925
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of thymic stromal lymphopoietin (TSLP) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["PMID:17129180","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"thymic stromal lymphopoietin production","synonyms":[{"name":"TSLP production","type":"exact"}],"termid":"GO:0071925"}


id: PBO:0048038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibrous sheath interacting protein 1","termid":"PBO:0048038"}


id: GO:0031878
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 1 somatostatin receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"somatostatin receptor binding","termid":"GO:0031877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"type 1 somatostatin receptor binding","synonyms":[{"name":"type 1 somatostatin receptor ligand","type":"narrow"}],"termid":"GO:0031878"}


id: PBO:0004051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAR adaptor protein Hob1","termid":"PBO:0004051"}


id: MONDO:0020808
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A sex cord-stromal tumor that arises from the testis and is characterized by the presence of neoplastic cells with features of Sertoli cells. It usually presents as a slow growing testicular mass. The vast majority of cases follow a benign clinical course.","direct_ancestors":[{"relation_name":"is_a","term_name":"Sertoli cell tumor","termid":"MONDO:0002696"},{"relation_name":"is_a","term_name":"testicular sex cord-stromal neoplasm","termid":"MONDO:0003125"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testicular sertoli cell tumor","secondary_identifiers":["MEDGEN:91165","NCIT:C4672","UMLS:C0349671"],"synonyms":[{"name":"Sertoli Cell Neoplasm of Testis","type":"exact"},{"name":"Sertoli Cell Neoplasm of the Testis","type":"exact"},{"name":"Sertoli Cell Tumor of Testis","type":"exact"},{"name":"Sertoli Cell Tumor of the Testis","type":"exact"},{"name":"Sertoli Cell Tumour of Testis","type":"exact"},{"name":"Sertoli Cell Tumour of the Testis","type":"exact"},{"name":"Testicular Sertoli Cell Neoplasm","type":"exact"},{"name":"Testicular Sertoli Cell Tumor","type":"exact"},{"name":"Testicular Sertoli Cell Tumor, NOS","type":"exact"},{"name":"Testicular Sertoli Cell Tumor, Not Otherwise Specified","type":"exact"},{"name":"Testicular Sertoli Cell Tumour","type":"exact"}],"termid":"MONDO:0020808","xrefs":{"Monarch":{"xref_id":"0020808"}}}


id: GO:0030797
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 24-methylidenelophenol + S-adenosyl-L-methionine(1+) = (Z)-24-ethylidenelophenol + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["EC:2.1.1.143","RHEA:21044"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016741","GO:0003674"],"is_obsolete":false,"name":"24-methylenesterol C-methyltransferase activity","secondary_identifiers":["MetaCyc:2.1.1.143-RXN","KEGG_REACTION:R05776"],"synonyms":[{"name":"24-methylenelophenol C-24(1)-methyltransferase activity","type":"related"},{"name":"24-methylenelophenol C-241-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:24-methylenelophenol C-methyltransferase activity","type":"related"},{"name":"SMT(2) activity","type":"narrow"},{"name":"SMT2","type":"related"}],"termid":"GO:0030797"}


id: MONDO:0000090
data:
  {"annotated_genes":["SJAG_02658","SJAG_02050","SJAG_06022","SJAG_04665","SJAG_04183","SJAG_00885","SJAG_04816"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86953],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014062"},{"annotations":[88365],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0024528"},{"annotations":[86986],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012238"},{"annotations":[87357],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013117"},{"annotations":[88177],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009783"},{"annotations":[86948],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014656"},{"annotations":[88248],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0020845"},{"annotations":[87890],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957993"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"progressive external ophthalmoplegia","termid":"MONDO:0005181"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00885":null,"SJAG_02050":null,"SJAG_02658":null,"SJAG_04183":null,"SJAG_04665":null,"SJAG_04816":null,"SJAG_06022":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005336","MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"progressive external ophthalmoplegia with mitochondrial DNA deletions","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIMPS:157640"],"synonyms":[{"name":"progressive external ophthalmoplegia with mtDNA deletions","type":"exact"}],"termid":"MONDO:0000090","terms_by_termid":{"MONDO:0009783":null,"MONDO:0012238":null,"MONDO:0013117":null,"MONDO:0014062":null,"MONDO:0014656":null,"MONDO:0020845":null,"MONDO:0024528":null,"MONDO:0957993":null},"xrefs":{"Monarch":{"xref_id":"0000090"}}}


id: PBO:0012863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome subunit Csl4","termid":"PBO:0012863"}


id: GO:0033338
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a medial fin over time, from its formation to the mature structure.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fin development","termid":"GO:0033333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"medial fin development","synonyms":[{"name":"median fin development","type":"exact"}],"termid":"GO:0033338"}


id: GO:0015981
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The passive movement of protons from areas of high proton concentration and electrical potential to areas where concentration and electrical potential are low.","definition_xrefs":["ISBN:0716731363"],"gene_count":0,"genotype_count":0,"name":"obsolete passive proton transport, down the electrochemical gradient (obsolete GO:0015981)","synonyms":[{"name":"passive proton transport, down the electrochemical gradient","type":"exact"}],"termid":"GO:0015981"}


id: MOD:01641
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes or replaces an L-leucine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-leucine residue","termid":"MOD:00911"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue removal","termid":"MOD:01651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-leucine removal","termid":"MOD:01641"}


id: PBO:0110336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP6V1F pseudogene 2","termid":"PBO:0110336"}


id: MONDO:0006801
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant neoplasm that affects the wall of the ileum. Representative examples include adenoma, carcinoma, and lymphoma.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small intestine neoplasm","termid":"MONDO:0004251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"ileal neoplasm","secondary_identifiers":["MONDO:0021376","EFO:1000981","MEDGEN:43825","MESH:D007078","SCTID:126835002","NCIT:C3130","UMLS:C0020876","DOID:10156"],"synonyms":[{"name":"ileal tumor","type":"exact"},{"name":"ileal tumour","type":"exact"},{"name":"ileum neoplasm","type":"exact"},{"name":"ileum neoplasm (disease)","type":"exact"},{"name":"ileum tumor","type":"exact"},{"name":"ileum tumour","type":"exact"},{"name":"neoplasm of ileum","type":"exact"},{"name":"neoplasm of the ileum","type":"exact"},{"name":"tumor of ileum","type":"exact"},{"name":"tumor of the ileum","type":"exact"},{"name":"tumour of ileum","type":"exact"},{"name":"tumour of the ileum","type":"exact"}],"termid":"MONDO:0006801","xrefs":{"Monarch":{"xref_id":"0006801"}}}


id: _global:should_conform_to
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"should_conform_to","termid":"_global:should_conform_to","xrefs":{"Monarch":{"xref_id":"should_conform_to"}}}


id: PATO:0000366
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A directional quality inhering in a bearer by virtue of the bearer's direction that is similar to the direction of an object to the north when it faces east.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"direction","termid":"PATO:0000039"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"left","termid":"PATO:0000366"}


id: GO:0080153
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the reductive pentose-phosphate cycle.","definition_xrefs":["PMID:17031544","PMID:20399532"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of biosynthetic process","termid":"GO:0009890"},{"relation_name":"is_a","term_name":"negative regulation of carbohydrate metabolic process","termid":"GO:0045912"},{"relation_name":"is_a","term_name":"regulation of reductive pentose-phosphate cycle","termid":"GO:0080152"},{"relation_name":"is_a","term_name":"negative regulation of photosynthesis","termid":"GO:1905156"},{"relation_name":"negatively_regulates","term_name":"reductive pentose-phosphate cycle","termid":"GO:0019253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"negatively_regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"negative regulation of reductive pentose-phosphate cycle","synonyms":[{"name":"negative regulation of C3 photosynthesis","type":"narrow"},{"name":"negative regulation of Calvin cycle","type":"narrow"}],"termid":"GO:0080153"}


id: PBO:0055993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"limbic system associated membrane protein","termid":"PBO:0055993"}


id: GO:0048282
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of determinate inflorescences are generated and organized. A determinate inflorescence is one that can only produce a predetermined number of floral meristems.","definition_xrefs":["PMID:9553044","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflorescence morphogenesis","termid":"GO:0048281"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"determinate inflorescence morphogenesis","termid":"GO:0048282"}


id: GO:0032681
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of lymphotoxin A production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein metabolic process","termid":"GO:0051246"},{"relation_name":"is_a","term_name":"regulation of tumor necrosis factor superfamily cytokine production","termid":"GO:1903555"},{"relation_name":"regulates","term_name":"lymphotoxin A production","termid":"GO:0032641"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of lymphotoxin A production","secondary_identifiers":["GO:0043016"],"synonyms":[{"name":"regulation of LTA production","type":"exact"},{"name":"regulation of TNF-beta production","type":"exact"},{"name":"regulation of lymphotoxin A biosynthetic process","type":"narrow"},{"name":"regulation of lymphotoxin-alpha production","type":"exact"},{"name":"regulation of tumor necrosis factor-beta production","type":"exact"}],"termid":"GO:0032681"}


id: GO:0014818
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a skeletal muscle satellite cell regardless of its environment; upon determination, the cell fate cannot be reversed.","definition_xrefs":["GOC:mtg_muscle","PMID:16607119","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stem cell fate determination","termid":"GO:0048867"},{"relation_name":"part_of","term_name":"skeletal muscle satellite cell commitment","termid":"GO:0014813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"skeletal muscle satellite cell fate determination","termid":"GO:0014818"}


id: PBO:0076590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 10C","termid":"PBO:0076590"}


id: GO:0103069
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 17alpha-hydroxyprogesterone + O2 + reduced [NADPH--hemoprotein reductase] = 11-deoxycortisol + H+ + H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["RHEA:50308"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid 21-monooxygenase activity","termid":"GO:0004509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"17-hydroxyprogesterone 21-hydroxylase activity","secondary_identifiers":["MetaCyc:RXN66-356"],"termid":"GO:0103069"}


id: FYECO:0000049
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which oleic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ fatty acid","termid":"FYECO:0000042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ oleic acid","termid":"FYECO:0000049"}


id: GO:0004114
data:
  {"annotated_genes":["SJAG_02481"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[80829],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004115"},{"annotations":[80831],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047555"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a nucleoside 3',5'-cyclic phosphate + H2O = a nucleoside 5'-phosphate.","definition_xrefs":["RHEA:14653","PMID:35216259"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclic-nucleotide phosphodiesterase activity","termid":"GO:0004112"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02481":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0016788","GO:0003824"],"is_obsolete":false,"name":"3',5'-cyclic-nucleotide phosphodiesterase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["EC:3.1.4.17","Reactome:R-HSA-162425","MetaCyc:3.1.4.17-RXN"],"synonyms":[{"name":"3', 5'-cyclic nucleoside monophosphate phosphodiesterase activity","type":"related"},{"name":"3',5' cyclic-nucleotide phosphodiesterase activity","type":"exact"},{"name":"3',5'-cyclic-nucleotide 5'-nucleotidohydrolase activity","type":"related"},{"name":"3',5'-cyclonucleotide phosphodiesterase activity","type":"related"},{"name":"3',5'-nucleotide phosphodiesterase activity","type":"related"},{"name":"3': 5'-monophosphate phosphodiesterase (cyclic CMP) activity","type":"related"},{"name":"3':5'-cyclic nucleotide 5'-nucleotidohydrolase activity","type":"related"},{"name":"PDE","type":"related"},{"name":"cyclic 3',5'-mononucleotide phosphodiesterase activity","type":"related"},{"name":"cyclic 3',5'-nucleotide phosphodiesterase activity","type":"related"},{"name":"cyclic 3',5'-phosphodiesterase activity","type":"related"},{"name":"cyclic 3',5-nucleotide monophosphate phosphodiesterase activity","type":"related"},{"name":"cyclic AMP phosphodiesterase activity","type":"narrow"},{"name":"cyclic nucleotide phosphodiesterase activity","type":"related"},{"name":"cytidine 3':5'-monophosphate phosphodiesterase (cyclic CMP) activity","type":"related"},{"name":"nucleoside 3',5'-cyclic phosphate diesterase activity","type":"related"},{"name":"nucleoside-3',5-monophosphate phosphodiesterase activity","type":"related"}],"termid":"GO:0004114","terms_by_termid":{"GO:0004115":null,"GO:0047555":null}}


id: GO:0016114
data:
  {"annotated_genes":["SJAG_03349","SJAG_03352","SJAG_04307","SJAG_03715","SJAG_00413","SJAG_04499","SJAG_04568","SJAG_04865","SJAG_00624","SJAG_03360","SJAG_00580","SJAG_01474"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[115742,116906,76066,101513,108484,81904,96332,103811,90560,111457],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010142"},{"annotations":[101514,111458],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033386"},{"annotations":[62532,67802],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016104"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpenoid metabolic process","termid":"GO:0006721"},{"relation_name":"is_a","term_name":"isoprenoid biosynthetic process","termid":"GO:0008299"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00413":null,"SJAG_00580":null,"SJAG_00624":null,"SJAG_01474":null,"SJAG_03349":null,"SJAG_03352":null,"SJAG_03360":null,"SJAG_03715":null,"SJAG_04307":null,"SJAG_04499":null,"SJAG_04568":null,"SJAG_04865":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"terpenoid biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Terpenoid"],"synonyms":[{"name":"terpenoid anabolism","type":"exact"},{"name":"terpenoid biosynthesis","type":"exact"},{"name":"terpenoid formation","type":"exact"},{"name":"terpenoid synthesis","type":"exact"}],"termid":"GO:0016114","terms_by_termid":{"GO:0010142":null,"GO:0016104":null,"GO:0033386":null}}


id: PBO:0108683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RabGAP Gyp7","termid":"PBO:0108683"}


id: GO:0019541
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving propionate, the anion derived from propionic (propanoic) acid, a carboxylic acid important in the energy metabolism of ruminants.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"short-chain fatty acid metabolic process","termid":"GO:0046459"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"propionate metabolic process","synonyms":[{"name":"propanoate metabolic process","type":"exact"},{"name":"propanoate metabolism","type":"exact"},{"name":"propionate metabolism","type":"exact"}],"termid":"GO:0019541"}


id: PBO:0005185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger splicing factor Bpb1","termid":"PBO:0005185"}


id: PBO:0044511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoskeleton regulator RNA","termid":"PBO:0044511"}


id: PBO:0052814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 80","termid":"PBO:0052814"}


id: PBO:0113399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative serine hydrolase; likely target of Cyc8p-Tup1p-Rfx1p transcriptional regulation; localizes to cytosol and peroxisomes; similar to S. cerevisiae Fsh1p and Fsh2p and the human candidate tumor suppressor OVCA2","termid":"PBO:0113399"}


id: PBO:0011112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intergenic RNA Omt3","termid":"PBO:0011112"}


id: GO:0047182
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an alcohol + 1-O-trans-cinnamoyl-beta-D-glucopyranose = beta-D-glucose + alkyl cinnamate.","definition_xrefs":["MetaCyc:2.3.1.152-RXN","EC:2.3.1.152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"alcohol O-cinnamoyltransferase activity","secondary_identifiers":["RHEA:23524"],"synonyms":[{"name":"1-O-trans-cinnamoyl-beta-D-glucopyranose:alcohol O-cinnamoyltransferase activity","type":"related"}],"termid":"GO:0047182"}


id: PBO:0078776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 2-8","termid":"PBO:0078776"}


id: PBO:0038401
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-helper_property_(not_for_use_in_curation)","termid":"PBO:0038401"}


id: MONDO:0000787
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A allergy involving a Solanum lycopersicum.","definition_xrefs":["MONDO:patterns/allergy"],"gene_count":0,"genotype_count":0,"name":"obsolete tomato allergy (obsolete MONDO:0000787)","secondary_identifiers":["DOID:0060512"],"synonyms":[{"name":"Solanum lycopersicum allergic disease","type":"exact"},{"name":"Solanum lycopersicum caused allergic disease","type":"exact"},{"name":"Solanum lycopersicum fruit allergy","type":"exact"},{"name":"allergy of Solanum lycopersicum","type":"exact"}],"termid":"MONDO:0000787","xrefs":{"Monarch":{"xref_id":"0000787"}}}


id: PBO:0074650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 40","termid":"PBO:0074650"}


id: PBO:0012859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome subunit Rrp45","termid":"PBO:0012859"}


id: PBO:0073974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 22 member 25","termid":"PBO:0073974"}


id: PBO:0057863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3174","termid":"PBO:0057863"}


id: PBO:0066074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinoic acid receptor responder 2 pseudogene 2","termid":"PBO:0066074"}


id: PBO:0049056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 61","termid":"PBO:0049056"}


id: MONDO:0012643
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive spastic paraplegia type 32 (SPG32) is a rare, complex type of hereditary spastic paraplegia characterized by a slowly progressive spastic paraplegia (with walking difficulties appearing at onset at 6-7 years of age) associated with mild intellectual disability. Brain imaging reveals thin corpus callosum, cortical and cerebellar atrophy, and pontine dysraphia. The SPG32 phenotype has been mapped to a locus on chromosome 14q12-q21.","definition_xrefs":["Orphanet:171622"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complex hereditary spastic paraplegia","termid":"MONDO:0015150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"hereditary spastic paraplegia 32","secondary_identifiers":["UMLS:C1970009","SCTID:726606003","MESH:C566983","GARD:12749","MEDGEN:409967","OMIM:611252","DOID:0110783"],"synonyms":[{"name":"SPG32","type":"exact"},{"name":"autosomal recessive spastic paraplegia 32","type":"exact"},{"name":"autosomal recessive spastic paraplegia type 32","type":"exact"},{"name":"hereditary spastic paraplegia type 32","type":"exact"},{"name":"spastic paraplegia 32","type":"related"},{"name":"spastic paraplegia 32, autosomal recessive","type":"related"}],"termid":"MONDO:0012643","xrefs":{"Monarch":{"xref_id":"0012643"}}}


id: PBO:0044469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 7 subfamily B member 1","termid":"PBO:0044469"}


id: PBO:0085281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peroxisomal membrane protein (PMP); required for proper localization and stability of PMPs; anchors peroxisome retention factor Inp1p at the peroxisomal membrane; interacts with Pex19p","termid":"PBO:0085281"}


id: MONDO:0010445
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete McLeod syndrome (obsolete MONDO:0010445)","termid":"MONDO:0010445","xrefs":{"Monarch":{"xref_id":"0010445"}}}


id: RO:0002009
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relation that applies between a cell(c) and a gene(g) , where the process of 'transcription, DNA templated (GO_0006351)' is occuring in in cell c and that process has input gene g.","direct_ancestors":[{"relation_name":"is_a","term_name":"expresses","termid":"RO:0002292"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell_expresses","termid":"RO:0002009"}


id: PR:O14038
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein cornichon that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01768","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C2C4.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2C4.05","secondary_identifiers":["UniProtKB:O14038"],"synonyms":[{"name":"Spom972h-CNIH1","type":"exact"}],"termid":"PR:O14038"}


id: MONDO:0016501
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hermansky-Pudlak syndrome with pulmonary fibrosis as a complication includes two types (HPS-1 and HPS-4) of Hermansky-Pudlak syndrome (HPS), a multi-system disorder characterized by oculocutaneous albinism, bleeding diathesis and, in some cases, pulmonary fibrosis or granulomatous colitis.","definition_xrefs":["Orphanet:231500"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interstitial lung disease specific to childhood","termid":"MONDO:0017014"},{"relation_name":"is_a","term_name":"Hermansky-Pudlak syndrome","termid":"MONDO:0019312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005093","MONDO:0005066"],"is_obsolete":false,"name":"Hermansky-Pudlak syndrome with pulmonary fibrosis","secondary_identifiers":["GARD:17168","MEDGEN:1843223","icd11.foundation:1086187623","UMLS:C5679834","ICD10CM:E70.3"],"synonyms":[{"name":"HPS with pulmonary fibrosis","type":"exact"}],"termid":"MONDO:0016501","xrefs":{"Monarch":{"xref_id":"0016501"}}}


id: GO:0102047
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: indole-3-acetate + glycine + ATP(4-) = H+ + indole-3-acetyl-glycine + AMP(2-) + diphosphoric acid.","definition_xrefs":["PMID:15659623","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"indole-3-acetyl-glycine synthetase activity","secondary_identifiers":["MetaCyc:RXN-10429"],"termid":"GO:0102047"}


id: PBO:0017756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic phenylalanine-tRNA ligase beta subunit Frs1 (predicted)","termid":"PBO:0017756"}


id: FYPO:0007409
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which alternative polyadenylation of mRNA is abnormal. mRNA alternative polyadenylation generates mRNA molecules with variable 3'-end lengths from a given pre-mRNA by differential use of cleavage and polyadenylation signals. Includes differences in the relative usage levels of alternative polyadenylation sites.","definition_xrefs":["GO:0110104","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal RNA alternative polyadenylation","termid":"FYPO:0007919"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0006551"],"is_obsolete":false,"name":"abnormal mRNA alternative polyadenylation","synonyms":[{"name":"abnormal mRNA alternative polyadenylation during mitotic cell cycle","type":"related"},{"name":"abnormal mRNA alternative polyadenylation during vegetative growth","type":"exact"}],"termid":"FYPO:0007409"}


id: MONDO:0008762
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive Alport syndrome isa genetic condition characterized by kidney disease, hearing loss, and eye abnormalities. Most affected individuals experience progressive loss of kidney function, usually resulting in end-stage kidney disease. People with Alport syndrome frequently develop sensorineural hearing loss in late childhood or early adolescence. The eye abnormalities seen in this condition seldom lead to vision loss. Alport syndrome can have different patterns of inheritance. About15 percentof Alport syndrome cases are inherited in an autosomal recessive pattern and are caused bymutations in both copies of the COL4A3 or COL4A4 genes. Treatment is based on the symptoms present and may include medications to delay the progression of kidney disease. In most cases, a kidney transplant is eventually needed.","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"Alport syndrome","termid":"MONDO:0018965"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005240"],"is_obsolete":false,"name":"autosomal recessive Alport syndrome","secondary_identifiers":["MedDRA:10001843","OMIM:203780","DOID:0110033","MEDGEN:1648334","SCTID:717767009","GARD:625","UMLS:C4746745","Orphanet:88919"],"synonyms":[{"name":"Alport syndrome 2, autosomal recessive","type":"exact"},{"name":"Alport syndrome autosomal recessive","type":"related"},{"name":"Alport syndrome recessive type","type":"related"},{"name":"Alport syndrome, autosomal recessive","type":"exact"},{"name":"nephropathy and deafness","type":"related"}],"termid":"MONDO:0008762","xrefs":{"Monarch":{"xref_id":"0008762"}}}


id: PBO:0116632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARF GTPase 4 pseudogene 5","termid":"PBO:0116632"}


id: SO:0001563
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant where copies of a feature (CNV) are either increased or decreased.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_length_variant","termid":"SO:0002160"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copy_number_change","synonyms":[{"name":"copy number change","type":"exact"}],"termid":"SO:0001563"}


id: PBO:0044281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-X-C motif chemokine receptor 4","termid":"PBO:0044281"}


id: PBO:0057160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 302e","termid":"PBO:0057160"}


id: GO:0072499
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemotaxis process that directs the migration of a photoreceptor cell axon growth cone to its target in the optic lobe in response to a combination of attractive and repulsive cues.","definition_xrefs":["GOC:sart","PMID:20826677"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axon guidance","termid":"GO:0007411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"photoreceptor cell axon guidance","synonyms":[{"name":"photoreceptor cell axon pathfinding","type":"exact"}],"termid":"GO:0072499"}


id: PBO:0079939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USH1 protein network component harmonin","termid":"PBO:0079939"}


id: PBO:0064808
data:
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id: PR:Q10369
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id: GO:0032787
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id: PBO:0048080
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id: PBO:0041422
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id: MONDO:0000289
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id: PBO:0004443
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id: GO:0044073
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id: PBO:0045573
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id: GO:0005829
data:
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id: PBO:0055484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2917","termid":"PBO:0055484"}


id: PBO:0060941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear factor, erythroid 2 like 3 pseudogene 1","termid":"PBO:0060941"}


id: PBO:0044611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDB1 and CUL4 associated factor 13 pseudogene 2","termid":"PBO:0044611"}


id: PR:O42877
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fcf2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42877"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA-processing protein fcf2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3G9.15c","synonyms":[{"name":"Spom972h-fcf2","type":"exact"}],"termid":"PR:O42877"}


id: MONDO:0008881
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Kyphomelic dysplasia is a prenatal skeletal disease that causes dwarfism characterized bythe following: a disproportionately short stature with a short narrow chest,shortening and bending (bowing)of the limbs, flared irregular metaphyses of the bones, and characteristicfacial features.Bone changes are said to improve with age.Kyphomelic dysplasia is inherited in an autosomal recessive pattern. Recent studies indicate that Kyphomelic dysplasia is no longerconsidered it's ownentity and that individual cases should be further evaluated andre-classified as another existing chondrodysplasias, such as Schwartz-Jampel syndrome.","direct_ancestors":[{"relation_name":"is_a","term_name":"bent bone dysplasia","termid":"MONDO:0019698"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kyphomelic dysplasia","secondary_identifiers":["ICD9:733.29","UMLS:C0432239","MEDGEN:140930","OMIM:211350","Orphanet:1801","GARD:10149","SCTID:254096001","MESH:C538128","icd11.foundation:268821879"],"synonyms":[{"name":"bowing, congenital, with short bones","type":"related"},{"name":"congenital bowing with short bones","type":"related"},{"name":"kyphomelic dysplasia","type":"exact"}],"termid":"MONDO:0008881","xrefs":{"Monarch":{"xref_id":"0008881"}}}


id: FYPO:0006351
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which mitotic spindle microtubules become disconnected from the spindle pole body.","definition_xrefs":["PMID:17579515","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle","termid":"FYPO:0000338"},{"relation_name":"is_a","term_name":"abnormal mitotic spindle pole body morphology","termid":"FYPO:0001474"},{"relation_name":"is_a","term_name":"abnormal spindle morphology","termid":"FYPO:0003607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000120","FYPO:0001985","FYPO:0002399","FYPO:0000054","FYPO:0001320"],"is_obsolete":false,"name":"mitotic spindle microtubules detached from spindle pole body","synonyms":[{"name":"mitotic spindle microtubules detached from SPB","type":"exact"},{"name":"mitotic spindle microtubules detached from spindle pole body during vegetative growth","type":"exact"},{"name":"spindle microtubules detached from spindle pole body during mitosis","type":"exact"},{"name":"spindle microtubules detached from spindle pole body during mitotic cell cycle","type":"exact"},{"name":"spindle pole body detached from mitotic spindle microtubules","type":"exact"}],"termid":"FYPO:0006351"}


id: GO:1905858
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of heparan sulfate proteoglycan binding.","definition_xrefs":["GOC:TermGenie","GO_REF:0000059","GOC:aruk","GOC:bc","PMID:7683668"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of heparan sulfate proteoglycan binding (obsolete GO:1905858)","synonyms":[{"name":"regulation of heparin proteoglycan binding","type":"related"}],"termid":"GO:1905858"}


id: PBO:0092031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Arginine (ucg), mitochondrial","termid":"PBO:0092031"}


id: PBO:0034529
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_onset_of_premeiotic_DNA_replication","termid":"PBO:0034529"}


id: GO:0042749
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the circadian sleep/wake cycle.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of circadian rhythm","termid":"GO:0042752"},{"relation_name":"is_a","term_name":"regulation of behavior","termid":"GO:0050795"},{"relation_name":"regulates","term_name":"circadian sleep/wake cycle","termid":"GO:0042745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of circadian sleep/wake cycle","termid":"GO:0042749"}


id: PBO:0053970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1281","termid":"PBO:0053970"}


id: PBO:0036278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palmitoyl-(protein) hydrolase (predicted)","termid":"PBO:0036278"}


id: PBO:0040203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antisense transcript of PTP4A3, liver carcinoma survival associated","termid":"PBO:0040203"}


id: GO:2000929
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cellodextrin catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catabolic process","termid":"GO:0009896"},{"relation_name":"is_a","term_name":"positive regulation of cellodextrin metabolic process","termid":"GO:2000926"},{"relation_name":"is_a","term_name":"regulation of cellodextrin catabolic process","termid":"GO:2000927"},{"relation_name":"positively_regulates","term_name":"cellodextrin catabolic process","termid":"GO:2000890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"positive regulation of cellodextrin catabolic process","synonyms":[{"name":"positive regulation of cellodextrin catabolism","type":"exact"}],"termid":"GO:2000929"}


id: GO:0008080
data:
  {"annotated_genes":["SJAG_01826","SJAG_03112","SJAG_01619","SJAG_03900","SJAG_02773","SJAG_02990","SJAG_04631","SJAG_01877","SJAG_03537","SJAG_01899","SJAG_00246","SJAG_02165","SJAG_04791","SJAG_02309","SJAG_00519","SJAG_02296","SJAG_02726","SJAG_04535","SJAG_01204","SJAG_01592","SJAG_00695","SJAG_04131","SJAG_03288","SJAG_00676"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[64462,72197,104960,119267],"is_not":false,"summary":null,"term":"GO:0008080"},{"annotations":[74145],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990883"},{"annotations":[76142],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004059"},{"annotations":[94646],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046941"},{"annotations":[102550,89260],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004145"},{"annotations":[72667],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004343"},{"annotations":[66536],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004402"},{"annotations":[75792],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043998"},{"annotations":[92630,93293],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036408"},{"annotations":[93294],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043993"},{"annotations":[100882],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044016"},{"annotations":[74341],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032931"},{"annotations":[93295],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043992"},{"annotations":[75794,100883],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010485"},{"annotations":[90291],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043997"},{"annotations":[90292],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043995"},{"annotations":[90293],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043996"},{"annotations":[90095],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047198"},{"annotations":[66616,74134],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004042"},{"annotations":[66615],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004358"},{"annotations":[105515,117348],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120518"},{"annotations":[79135,75795],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990189"},{"annotations":[105926],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061733"},{"annotations":[120007],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004596"},{"annotations":[91267],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008999"},{"annotations":[79136],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990190"},{"annotations":[74146],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051392"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetyltransferase activity","termid":"GO:0016407"},{"relation_name":"is_a","term_name":"N-acyltransferase 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activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-2468039","Reactome:R-HSA-2473152","Reactome:R-HSA-6790987","Reactome:R-HSA-9636560"],"termid":"GO:0008080","terms_by_termid":{"GO:0004042":null,"GO:0004059":null,"GO:0004145":null,"GO:0004343":null,"GO:0004358":null,"GO:0004402":null,"GO:0004596":null,"GO:0008080":null,"GO:0008999":null,"GO:0010485":null,"GO:0032931":null,"GO:0036408":null,"GO:0043992":null,"GO:0043993":null,"GO:0043995":null,"GO:0043996":null,"GO:0043997":null,"GO:0043998":null,"GO:0044016":null,"GO:0046941":null,"GO:0047198":null,"GO:0051392":null,"GO:0061733":null,"GO:0120518":null,"GO:1990189":null,"GO:1990190":null,"GO:1990883":null}}


id: GO:0062058
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a transcription factor TFIIH holo complex.","definition_xrefs":["PMID:11259578"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"transcription factor TFIIH holo complex binding","termid":"GO:0062058"}


id: MONDO:0018049
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Kaposi sarcoma (obsolete MONDO:0018049)","termid":"MONDO:0018049","xrefs":{"Monarch":{"xref_id":"0018049"}}}


id: PBO:0047447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fc gamma receptor IIc (gene/pseudogene)","termid":"PBO:0047447"}


id: PBO:0060596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-SMC condensin I complex subunit D2","termid":"PBO:0060596"}


id: PBO:0050946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon alpha 20, pseudogene","termid":"PBO:0050946"}


id: PBO:0034432
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_duration_of_mitosis","termid":"PBO:0034432"}


id: PBO:0083030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deleted ORF; originally included in genome annotation but deleted due to sequence correction","termid":"PBO:0083030"}


id: PBO:0000693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F1-ATPase beta subunit Atp2","termid":"PBO:0000693"}


id: PBO:0042623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caudal type homeobox 4","termid":"PBO:0042623"}


id: PBO:0031766
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_antimycin_A","termid":"PBO:0031766"}


id: FYPO:0001045
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of acid phosphatase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal acid phosphatase activity","termid":"FYPO:0001044"},{"relation_name":"is_a","term_name":"decreased phosphatase activity","termid":"FYPO:0004304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0001985","FYPO:0000661","FYPO:0000654"],"is_obsolete":false,"name":"decreased acid phosphatase activity","synonyms":[{"name":"reduced acid phosphatase activity","type":"exact"}],"termid":"FYPO:0001045"}


id: PBO:0050513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox C13","termid":"PBO:0050513"}


id: MONDO:0011608
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing atopic dermatitis that is associated with variation in the region 13q12-q14.","definition_xrefs":["DOID:0110101","MONDO:patterns/inherited_susceptibility","PMID:11069631"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"excluded_subClassOf","term_name":"atopic eczema","termid":"MONDO:0004980"},{"relation_name":"is_a","term_name":"dermatitis, atopic, susceptibility to","termid":"MONDO:0100178"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dermatitis, atopic, 5","secondary_identifiers":["MEDGEN:381292","OMIM:605844","UMLS:C1853900","MESH:C565280"],"synonyms":[{"name":"ATOD5","type":"exact"},{"name":"atopic dermatitis 5","type":"exact"},{"name":"atopic dermatitis type 5","type":"exact"},{"name":"dermatitis, ATOPIC, 5","type":"related"},{"name":"dermatitis, atopic, susceptibility to, 5","type":"exact"}],"termid":"MONDO:0011608","xrefs":{"Monarch":{"xref_id":"0011608"}}}


id: _global:relation_between_physical_entity_and_a_process_or_stage
data:
  {"annotation_feature_type":"gene","cv_name":"external","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"relation_between_physical_entity_and_a_process_or_stage","secondary_identifiers":["RO:0002487"],"termid":"_global:relation_between_physical_entity_and_a_process_or_stage"}


id: PBO:0046905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 25 member E, pseudogene","termid":"PBO:0046905"}


id: PBO:0047396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 36","termid":"PBO:0047396"}


id: SO:0001447
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A polar amino acid encoded by the codons TGT and TGC.","direct_ancestors":[{"relation_name":"is_a","term_name":"amino_acid","termid":"SO:0001237"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine","synonyms":[{"name":"C","type":"exact"},{"name":"Cys","type":"exact"}],"termid":"SO:0001447"}


id: GO:0031420
data:
  {"annotated_genes":["SJAG_02796"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70426],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030955"}]},"cv_name":"molecular_function","definition":"Binding to an alkali metal ion; alkali metals are those elements in group Ia of the periodic table, with the exception of hydrogen.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metal ion binding","termid":"GO:0046872"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02796":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0046872"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0046872","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"alkali metal ion binding","references_by_uniquename":{"GO_REF:0000002":null},"termid":"GO:0031420","terms_by_termid":{"GO:0030955":null}}


id: PBO:0057099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR193b-365a host gene","termid":"PBO:0057099"}


id: PBO:0005729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element Wtf19","termid":"PBO:0005729"}


id: PBO:0073868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 9 member B1 pseudogene 4","termid":"PBO:0073868"}


id: PBO:0055305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2732","termid":"PBO:0055305"}


id: MONDO:0060778
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A Fanconi renotubular syndrome that occurs in an adult. Adult Fanconi syndrome is typically acquired.","definition_xrefs":["MONDO:patterns/adult"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Fanconi renotubular syndrome","termid":"MONDO:0001083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"adult Fanconi syndrome","secondary_identifiers":["UMLS:C0341703","NCIT:C4377","MEDGEN:137960"],"synonyms":[{"name":"adult Fanconi syndrome","type":"exact"},{"name":"adult Fanconi's syndrome","type":"exact"}],"termid":"MONDO:0060778","xrefs":{"Monarch":{"xref_id":"0060778"}}}


id: GO:0045208
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a MAPK phosphatase from the nucleus to the cytoplasm.","definition_xrefs":["GOC:ebc"],"gene_count":0,"genotype_count":0,"name":"obsolete MAPK phosphatase export from nucleus (obsolete GO:0045208)","synonyms":[{"name":"MAPK phosphatase export from cell nucleus","type":"exact"},{"name":"MAPK phosphatase export out of nucleus","type":"exact"},{"name":"MAPK phosphatase transport from nucleus to cytoplasm","type":"exact"},{"name":"MAPK phosphatase-nucleus export","type":"exact"}],"termid":"GO:0045208"}


id: MOD:01484
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-glutamic acid residue and an L-lysine residue by an isopeptide bond to form N6-(L-isoglutamyl)-L-lysine and the release of water.","definition_xrefs":["RESID:AA0124#GLU","ChEBI:21863","PubMed:19015515"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues with loss of water","termid":"MOD:00954"},{"relation_name":"is_a","term_name":"N6-(L-isoglutamyl)-L-lysine","termid":"MOD:01630"},{"relation_name":"is_a","term_name":"crosslinked L-glutamic acid residue","termid":"MOD:02045"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01875"}],"interesting_parent_ids":["MOD:01875"],"is_obsolete":false,"name":"N6-(L-isoglutamyl)-L-lysine (Glu)","synonyms":[{"name":"(2S)-2-amino-6-([(4S)-4-amino-4-carboxybutanoyl]amino)hexanoic acid","type":"exact"},{"name":"2-azanyl-6-([4-azanyl-4-carboxybutanoyl]azanyl)hexanoic acid","type":"exact"},{"name":"5-glutamyl N6-lysine","type":"exact"},{"name":"N alpha -(gamma-Glutamyl)-lysine","type":"exact"},{"name":"N(epsilon)-(gamma-glutamyl)lysine","type":"exact"},{"name":"N6-(L-isoglutamyl)-L-lysine","type":"exact"}],"termid":"MOD:01484"}


id: PBO:0043715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6B1 pseudogene 3","termid":"PBO:0043715"}


id: GO:0009651
data:
  {"annotated_genes":["SJAG_02389","SJAG_04567","SJAG_02883","SJAG_03815","SJAG_00661"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[62861,81444,111987],"is_not":false,"summary":null,"term":"GO:0009651"},{"annotations":[91383],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071473"},{"annotations":[102097],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071472"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to osmotic stress","termid":"GO:0006970"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00661":null,"SJAG_02389":null,"SJAG_02883":null,"SJAG_03815":null,"SJAG_04567":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to salt stress","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"response to ionic osmotic stress","type":"exact"},{"name":"salinity response","type":"exact"}],"termid":"GO:0009651","terms_by_termid":{"GO:0009651":null,"GO:0071472":null,"GO:0071473":null}}


id: GO:0072308
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of metanephric nephron tubule epithelial cell differentiation.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nephron tubule epithelial cell differentiation","termid":"GO:0072183"},{"relation_name":"is_a","term_name":"regulation of metanephric nephron tubule epithelial cell differentiation","termid":"GO:0072307"},{"relation_name":"negatively_regulates","term_name":"metanephric nephron tubule epithelial cell differentiation","termid":"GO:0072257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of metanephric nephron tubule epithelial cell differentiation","termid":"GO:0072308"}


id: PBO:0069519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 788, pseudogene","termid":"PBO:0069519"}


id: PBO:0075573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPIN2 family pseudogene 1","termid":"PBO:0075573"}


id: PBO:0073364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family H member 1","termid":"PBO:0073364"}


id: FYPO:0000316
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A viability phenotype in which a spore germinates but fails to produce dividing cells that can survive under normal conditions.","definition_xrefs":["PomBase:mah","PomBase:jh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable vegetative cell","termid":"FYPO:0001489"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"inviable after spore germination","synonyms":[{"name":"inviable germinated spore","type":"exact"},{"name":"inviable germinating spore","type":"related"},{"name":"lethal after spore germination","type":"exact"}],"termid":"FYPO:0000316"}


id: PBO:0111343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small subunit processome, U3 snoRNP-associated protein Utp1","termid":"PBO:0111343"}


id: PBO:0068516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 108, pseudogene","termid":"PBO:0068516"}


id: PBO:0041485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 11 open reading frame 98","termid":"PBO:0041485"}


id: GO:0045028
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a purine nucleotide and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.","definition_xrefs":["PMID:9755289","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purinergic nucleotide receptor activity","termid":"GO:0001614"},{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"G protein-coupled purinergic nucleotide receptor activity","synonyms":[{"name":"G protein coupled purinergic nucleotide receptor activity","type":"exact"},{"name":"G-protein coupled purinergic nucleotide receptor activity","type":"exact"},{"name":"P2Y","type":"related"},{"name":"P2Y receptor","type":"related"},{"name":"purinergic nucleotide receptor activity, G protein coupled","type":"exact"},{"name":"purinergic nucleotide receptor activity, G-protein coupled","type":"exact"}],"termid":"GO:0045028"}


id: GO:0009901
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The dehiscence of an anther to release the pollen grains contained within it.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dehiscence","termid":"GO:0009900"},{"relation_name":"part_of","term_name":"anther development","termid":"GO:0048653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anther dehiscence","termid":"GO:0009901"}


id: GO:0051988
data:
  {"annotated_genes":["SJAG_00082","SJAG_04280","SJAG_01805","SJAG_03048","SJAG_04140","SJAG_01837","SJAG_05290","SJAG_03126"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104295],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902424"},{"annotations":[107129,113947,118011],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902425"},{"annotations":[95690,113187,118685,91871,104315],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140429"},{"annotations":[118688],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904967"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the attachment of spindle microtubules to the kinetochore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"regulates","term_name":"attachment of spindle microtubules to kinetochore","termid":"GO:0008608"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_03048":null,"SJAG_03126":null,"SJAG_04140":null,"SJAG_04280":null,"SJAG_05290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"regulation of attachment of spindle microtubules to kinetochore","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of kinetochore-microtubule attachment","type":"exact"}],"termid":"GO:0051988","terms_by_termid":{"GO:0140429":null,"GO:1902424":null,"GO:1902425":null,"GO:1904967":null}}


id: PBO:0068640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 21, pseudogene","termid":"PBO:0068640"}


id: MONDO:0017638
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Manganese poisoning is associated with chronic inhalation of manganese particles by individuals who work with manganese ore. Clinical features include confusion; hallucinations; and an extrapyramidal syndrome (parkinson disease, secondary) that includes rigidity; dystonia; retropulsion; and tremor. (Adams, Principles of Neurology, 6th ed, p1213)","definition_xrefs":["MESH:D020149"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete rare parkinsonian syndrome due to intoxication (obsolete MONDO:0017637)","termid":"MONDO:0017637"},{"relation_name":"is_a","term_name":"poisoning","termid":"MONDO:0029000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"manganese poisoning","secondary_identifiers":["MedDRA:10058951","SCTID:88687001","Orphanet:306682","GARD:21264","EFO:1001808","ICD9:503"],"synonyms":[{"name":"Manganism","type":"exact"},{"name":"manganese intoxication","type":"exact"}],"termid":"MONDO:0017638","xrefs":{"Monarch":{"xref_id":"0017638"}}}


id: PBO:0066426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginine-glutamic acid dipeptide repeats pseudogene 1 Y-linked","termid":"PBO:0066426"}


id: MONDO:0003718
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cerebrovascular disorder","termid":"MONDO:0011057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"occlusion precerebral artery","secondary_identifiers":["DOID:5976","ICD9:433","SCTID:28790007","ICD9:433.80","EFO:0009677","ICD9:433.81","ICD9:433.9","ICD9:433.3","MEDGEN:539069","UMLS:C0265090"],"synonyms":[{"name":"occlusion and stenosis of multiple and bilateral precerebral arteries","type":"related"},{"name":"occlusion and stenosis of precerebral artery","type":"related"}],"termid":"MONDO:0003718","xrefs":{"Monarch":{"xref_id":"0003718"}}}


id: PBO:0064350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PLXNB3 antisense RNA 1","termid":"PBO:0064350"}


id: PBO:0055729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIM domain only 3","termid":"PBO:0055729"}


id: GO:0042072
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete cell adhesion receptor inhibitor activity (obsolete GO:0042072)","synonyms":[{"name":"cell adhesion receptor inhibitor activity","type":"exact"}],"termid":"GO:0042072"}


id: PBO:0036449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exon-exon junction complex disassembly factor Mni1 (predicted)","termid":"PBO:0036449"}


id: GO:0006144
data:
  {"annotated_genes":["SJAG_01859","SJAG_06634","SJAG_01661","SJAG_01997","SJAG_01081","SJAG_04297","SJAG_02364","SJAG_01814","SJAG_04300","SJAG_03140","SJAG_04299","SJAG_01070","SJAG_05287"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71752,77065],"is_not":false,"summary":null,"term":"GO:0006144"},{"annotations":[72519,119366,112341],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046084"},{"annotations":[99720],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046083"},{"annotations":[75701],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006168"},{"annotations":[69624],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006147"},{"annotations":[77413],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046100"},{"annotations":[60493,116505],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009113"},{"annotations":[75382,93660],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006145"},{"annotations":[73976],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009115"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleobase metabolic process","termid":"GO:0009112"},{"relation_name":"is_a","term_name":"purine-containing compound metabolic process","termid":"GO:0072521"}],"gene_count":13,"genes_by_uniquename":{"SJAG_01070":null,"SJAG_01081":null,"SJAG_01661":null,"SJAG_01814":null,"SJAG_01859":null,"SJAG_01997":null,"SJAG_02364":null,"SJAG_03140":null,"SJAG_04297":null,"SJAG_04299":null,"SJAG_04300":null,"SJAG_05287":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"purine nucleobase metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"purine base metabolic process","type":"exact"},{"name":"purine base metabolism","type":"exact"},{"name":"purine metabolic process","type":"narrow"},{"name":"purine metabolism","type":"narrow"}],"termid":"GO:0006144","terms_by_termid":{"GO:0006144":null,"GO:0006145":null,"GO:0006147":null,"GO:0006168":null,"GO:0009113":null,"GO:0009115":null,"GO:0046083":null,"GO:0046084":null,"GO:0046100":null}}


id: FYPO:0006782
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a protein measured in a complex that is a precursor of the large ribosomal subunit is lower than normal.","definition_xrefs":["PomBase:mah","PMID:27667686"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"is_a","term_name":"decreased protein level during vegetative growth","termid":"FYPO:0001324"},{"relation_name":"is_a","term_name":"abnormal protein complex composition","termid":"FYPO:0005003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein level in large ribosomal subunit precursor","synonyms":[{"name":"decreased large ribosomal subunit precursor complex protein level during vegetative growth","type":"exact"},{"name":"decreased protein level in large ribosomal subunit precursor during mitotic cell cycle","type":"related"},{"name":"decreased protein level in large ribosomal subunit precursor during vegetative growth","type":"exact"},{"name":"decreased protein level in preribosome, large subunit precursor","type":"exact"},{"name":"reduced protein level in large ribosomal subunit precursor","type":"exact"}],"termid":"FYPO:0006782"}


id: PBO:0005330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA endoribonuclease involved in mRNP quality control (predicted)","termid":"PBO:0005330"}


id: PBO:0067999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 301","termid":"PBO:0067999"}


id: PBO:0052358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 6","termid":"PBO:0052358"}


id: GO:0048200
data:
  {"annotated_genes":["SJAG_03268","SJAG_04391"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73019,119754],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048205"}]},"cv_name":"biological_process","definition":"The addition of specific coat proteins to Golgi membranes during the formation of transport vesicles.","definition_xrefs":["ISBN:0716731363","PMID:10219233","GOC:jid","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle coating","termid":"GO:0006901"},{"relation_name":"part_of","term_name":"Golgi vesicle budding","termid":"GO:0048194"},{"relation_name":"part_of","term_name":"vesicle targeting, to, from or within Golgi","termid":"GO:0048199"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03268":null,"SJAG_04391":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0061024","GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"Golgi transport vesicle coating","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"dictyosome transport vesicle coating","type":"narrow"}],"termid":"GO:0048200","terms_by_termid":{"GO:0048205":null}}


id: PBO:0053359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 265-2, pseudogene","termid":"PBO:0053359"}


id: MONDO:0005616
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lung carcinoma characterized by the presence of malignant non-keratinizing squamoid cells, mucin-producing cells and intermediate type cells.","definition_xrefs":["NCIT:C45544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucoepidermoid carcinoma","termid":"MONDO:0003036"},{"relation_name":"is_a","term_name":"lung colloid adenocarcinoma","termid":"MONDO:0027772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"pulmonary mucoepidermoid carcinoma","secondary_identifiers":["UMLS:C1708778","DOID:0050932","EFO:0006740","MEDGEN:310949","ONCOTREE:LUMEC"],"synonyms":[{"name":"lung mucoepidermoid cancer","type":"exact"},{"name":"lung mucoepidermoid carcinoma","type":"exact"},{"name":"mucoepidermoid carcinoma of the lung","type":"related"}],"termid":"MONDO:0005616","xrefs":{"Monarch":{"xref_id":"0005616"}}}


id: PBO:0073132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC14 like lipid binding 4","termid":"PBO:0073132"}


id: PBO:0005467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteinase B inhibitor Pbi2 (predicted)","termid":"PBO:0005467"}


id: PBO:0081879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 826, pseudogene","termid":"PBO:0081879"}


id: PBO:0066496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ret finger protein like 4A pseudogene 7","termid":"PBO:0066496"}


id: MONDO:0001325
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary or metastatic malignant neoplasm that affects the penis. Representative examples include penile carcinoma and penile sarcoma.","definition_xrefs":["NCIT:C7547"],"direct_ancestors":[{"relation_name":"is_a","term_name":"male reproductive organ cancer","termid":"MONDO:0005836"},{"relation_name":"is_a","term_name":"penile neoplasm","termid":"MONDO:0006895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"penile cancer","secondary_identifiers":["ICD9:187.4","SCTID:363516004","UMLS:C0153601","Orphanet:398043","MEDGEN:102277","GARD:9366","DOID:11615","ICD9:187.3"],"synonyms":[{"name":"Ca penis","type":"exact"},{"name":"cancer of penis","type":"exact"},{"name":"malignant neoplasm of body of penis","type":"exact"},{"name":"malignant neoplasm of penis","type":"exact"},{"name":"malignant neoplasm of the penis","type":"exact"},{"name":"malignant penile neoplasm","type":"exact"},{"name":"malignant penile tumor","type":"exact"},{"name":"malignant penile tumour","type":"exact"},{"name":"malignant penis neoplasm","type":"exact"},{"name":"malignant tumor of penis","type":"exact"},{"name":"malignant tumor of the penis","type":"exact"},{"name":"malignant tumour of penis","type":"exact"},{"name":"malignant tumour of the penis","type":"exact"},{"name":"penile Ca","type":"exact"},{"name":"penile cancer","type":"exact"},{"name":"penile neoplasm","type":"broad"},{"name":"penis cancer","type":"exact"}],"termid":"MONDO:0001325","xrefs":{"Monarch":{"xref_id":"0001325"}}}


id: PATO:0000214
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000214 reproductive function (obsolete PATO:0000214)","termid":"PATO:0000214"}


id: GO:0097717
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of copper (Cu) ions passing through the blood-cerebrospinal fluid barrier.","definition_xrefs":["PMID:24614235","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"copper ion transport","termid":"GO:0006825"},{"relation_name":"is_a","term_name":"transport across blood-cerebrospinal fluid barrier","termid":"GO:0150195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"copper ion transport across blood-cerebrospinal fluid barrier","synonyms":[{"name":"copper ion transport across BCB","type":"related"},{"name":"copper ion transport across BCSFB","type":"exact"},{"name":"copper ion transport across blood-CSF barrier","type":"exact"},{"name":"copper ion transport across blood/CSF barrier","type":"exact"},{"name":"copper ion transport across blood/cerebrospinal fluid barrier","type":"exact"}],"termid":"GO:0097717"}


id: MONDO:0020731
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A viral infection that is transmitted by an arthropod.","definition_xrefs":["NCIT:C34396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral infectious disease","termid":"MONDO:0005108"},{"relation_name":"is_a","term_name":"vector-borne disease","termid":"MONDO:0100120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arbovirus infection","secondary_identifiers":["EFO:1001269","MEDGEN:389","UMLS:C0003723","MESH:D001102","SCTID:40610006"],"synonyms":[{"name":"ARBOVIRUS INFECT","type":"related"},{"name":"Arboviral disease","type":"related"},{"name":"Arbovirus Infection","type":"related"},{"name":"Arbovirus Infections","type":"related"},{"name":"Arbovirus infection","type":"related"},{"name":"Arthropod-Borne Viral Infection","type":"related"},{"name":"Arthropod-borne viral infection","type":"related"},{"name":"Infection, Arbovirus","type":"related"},{"name":"Infections, Arbovirus","type":"related"},{"name":"arbovirus infection","type":"exact"},{"name":"arthropod-borne viral infection","type":"exact"}],"termid":"MONDO:0020731","xrefs":{"Monarch":{"xref_id":"0020731"}}}


id: PBO:0054238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1620","termid":"PBO:0054238"}


id: MONDO:0011311
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete glaucoma 1, open angle, F (obsolete MONDO:0011311)","secondary_identifiers":["MESH:C566383","OMIM:603383"],"synonyms":[{"name":"GLC1F","type":"related"},{"name":"glaucoma 1, open angle, F","type":"exact"},{"name":"glaucoma 1, open angle, type F","type":"exact"},{"name":"glaucoma, primary open angle, adult-onset","type":"related"}],"termid":"MONDO:0011311","xrefs":{"Monarch":{"xref_id":"0011311"}}}


id: FYPO:0005677
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sites at which the protein Rad52 (also called Rad22) accumulates is lower than normal during S phase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah","PMID:27151298"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased number of Rad52 foci during vegetative growth","termid":"FYPO:0004516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased number of Rad52 foci during mitotic S phase","synonyms":[{"name":"decreased number of Rad22 foci during mitotic S phase","type":"exact"},{"name":"decreased number of Rad52 foci during S phase of mitotic cell cycle","type":"exact"},{"name":"decreased number of Rad52 foci during mitotic S phase during vegetative growth","type":"exact"},{"name":"reduced number of Rad52 foci during mitotic S phase","type":"exact"}],"termid":"FYPO:0005677"}


id: PBO:0027987
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_without_cell_division,_cell_enlarged_around_nucleus","termid":"PBO:0027987"}


id: PBO:0080348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 112 pseudogene","termid":"PBO:0080348"}


id: GO:0045009
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An intracellular membrane-bounded particle found in fungi and containing chitin synthase; it synthesizes chitin microfibrils. Chitin synthase activity exists in chitosomes and they are proposed to act as a reservoir for regulated transport of chitin synthase enzymes to the division septum.","definition_xrefs":["ISBN:0198506732","PMID:8970154"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle","termid":"GO:0031410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"chitosome","termid":"GO:0045009"}


id: GO:0015386
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  {"annotated_genes":["SJAG_04616"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[81836],"is_not":false,"summary":null,"term":"GO:0015386"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(in) + H+(out) = K+(out) + H+(in).","definition_xrefs":["TC:2.A.37.-.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:potassium antiporter activity","termid":"GO:0022821"},{"relation_name":"is_a","term_name":"metal cation:proton antiporter activity","termid":"GO:0051139"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04616":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"potassium:proton antiporter activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:TRANS-RXN-42","RHEA:29467"],"synonyms":[{"name":"potassium:hydrogen antiporter activity","type":"exact"}],"termid":"GO:0015386","terms_by_termid":{"GO:0015386":null}}


id: PBO:0083921
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Formylglycinamidine-ribonucleotide (FGAM)-synthetase; catalyzes a step in the 'de novo' purine nucleotide biosynthetic pathway","termid":"PBO:0083921"}


id: PBO:0005244
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIIC complex subunit Sfc4","termid":"PBO:0005244"}


id: PBO:0113738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRCA1 associated deubiquitinase 1","termid":"PBO:0113738"}


id: SO:0000839
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id: MONDO:0016863
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Duane-radial ray syndrome","termid":"MONDO:0011812"},{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 20","termid":"MONDO:0016918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005497"],"is_obsolete":false,"name":"Okihiro syndrome due to 20q13 microdeletion","secondary_identifiers":["UMLS:C5679682","MEDGEN:1826026","Orphanet:261638","GARD:20787"],"synonyms":[{"name":"Duane-radial ray syndrome due to monosomy 20q13","type":"exact"},{"name":"Okihiro syndrome due to del(20)(q13)","type":"exact"},{"name":"Okihiro syndrome due to monosomy 20q13","type":"exact"}],"termid":"MONDO:0016863","xrefs":{"Monarch":{"xref_id":"0016863"}}}


id: PBO:0051168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-52 (pseudogene)","termid":"PBO:0051168"}


id: PBO:0011058
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-not_occurs_in","termid":"PBO:0011058"}


id: PR:P87053
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pof1 gene.","definition_xrefs":["UniProtKB:P87053","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box/WD repeat-containing protein pof1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC57A10.05c","synonyms":[{"name":"Spom972h-pof1","type":"exact"},{"name":"skp1-binding protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87053"}


id: GO:0044066
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id: GO:0039645
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont interferes with the normal execution of the host cell G1/S transition checkpoint. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:24501404","VZ:880"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host cell cycle progression","termid":"GO:0044071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host cell cycle G1/S transition checkpoint","synonyms":[{"name":"G1/S host cell cycle checkpoint dysregulation by virus","type":"exact"},{"name":"modulation by virus of host G1/S transition checkpoint","type":"related"},{"name":"perturbation by virus of host G1/S transition checkpoint","type":"narrow"}],"termid":"GO:0039645"}


id: MONDO:0100420
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any acute myeloid leukemia that has the chromosomal anomaly KIT gene mutation. (A molecular genetic abnormality that refers to mutation of the c-kit (CD117) proto-oncogene. It is associated with the development of gastrointestinal stromal tumor and gastrointestinal autonomic nerve tumor. It has also been described in acute myeloid leukemias, dysgerminomas, and seminomas.)","definition_xrefs":["NCIT:C39712"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute myeloid leukemia","termid":"MONDO:0018874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0004992","MONDO:0005570"],"is_obsolete":false,"name":"acute myeloid leukemia, KIT gene mutation","synonyms":[{"name":"AML, C-KIT Mutation","type":"exact"},{"name":"AML, CD117 Gene Mutation","type":"exact"},{"name":"AML, CD117 Mutation","type":"exact"},{"name":"AML, KIT Proto-Oncogene Tyrosine Protein Kinase Gene Mutation","type":"exact"},{"name":"AML, KIT gene mutation","type":"exact"},{"name":"AML, V-Kit Hardy-Zuckerman 4 Feline Sarcoma Viral Oncogene Homolog Gene Mutation","type":"exact"},{"name":"AML, c-KIT Gene Mutation","type":"exact"}],"termid":"MONDO:0100420","xrefs":{"Monarch":{"xref_id":"0100420"}}}


id: PR:Q10087
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC11D3.08c gene.","definition_xrefs":["UniProtKB:Q10087","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized amino-acid permease C11D3.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.08c","synonyms":[{"name":"Spom972h-SPAC11D3.08c","type":"exact"}],"termid":"PR:Q10087"}


id: GO:0055051
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex for the transport of metabolites out of the cell, consisting of 4 domains: two ATP-binding domains and two membrane spanning domains. In some cases, all 4 domains are contained on 1 polypeptide, while in others one ATP-binding domain and one membrane spanning domain are together on one polypeptide in what is called a half transporter. Two half-transporters come together to form a functional transporter. Transport of the substrate across the membrane is driven by the hydrolysis of ATP.","definition_xrefs":["GOC:mtg_sensu","GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-binding cassette (ABC) transporter complex","termid":"GO:0043190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"ATP-binding cassette (ABC) transporter complex, integrated substrate binding","termid":"GO:0055051"}


id: PBO:0111810
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho family","termid":"PBO:0111810"}


id: MONDO:0010326
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any non-syndromic X-linked intellectual disability in which the cause of the disease is a mutation in the ARHGEF6 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic X-linked intellectual disability","termid":"MONDO:0019181"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intellectual disability, X-linked 46","secondary_identifiers":["UMLS:C1845526","MEDGEN:337255","DOID:0112055","MESH:C564513","OMIM:300436","GARD:22677"],"synonyms":[{"name":"ARHGEF6 non-syndromic X-linked intellectual disability","type":"exact"},{"name":"MRX46","type":"related"},{"name":"intellectual disability, X-linked 46","type":"exact"},{"name":"intellectual disability, X-linked type 46","type":"exact"},{"name":"mental retardation, X-linked 46","type":"related"},{"name":"mental retardation, X-linked 46, X-linked recessive","type":"exact"},{"name":"mental retardation, X-linked type 46","type":"exact"},{"name":"non-syndromic X-linked intellectual disability caused by mutation in ARHGEF6","type":"exact"}],"termid":"MONDO:0010326","xrefs":{"Monarch":{"xref_id":"0010326"}}}


id: PBO:0056417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARCHF11 divergent transcript","termid":"PBO:0056417"}


id: GO:0002035
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an angiotensin-mediated signaling system present in the brain regulates the force with which blood passes through the circulatory system.","definition_xrefs":["PMID:2909574"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system process involved in regulation of systemic arterial blood pressure","termid":"GO:0001976"},{"relation_name":"is_a","term_name":"regulation of blood volume by renin-angiotensin","termid":"GO:0002016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"brain renin-angiotensin system","termid":"GO:0002035"}


id: GO:0043032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stimulates, induces or increases the rate of macrophage activation.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte activation","termid":"GO:0002696"},{"relation_name":"is_a","term_name":"regulation of macrophage activation","termid":"GO:0043030"},{"relation_name":"positively_regulates","term_name":"macrophage activation","termid":"GO:0042116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of macrophage activation","synonyms":[{"name":"activation of macrophage activation","type":"narrow"},{"name":"positive regulation of macrophage polarization","type":"exact"},{"name":"stimulation of macrophage activation","type":"narrow"},{"name":"up regulation of macrophage activation","type":"exact"},{"name":"up-regulation of macrophage activation","type":"exact"},{"name":"upregulation of macrophage activation","type":"exact"}],"termid":"GO:0043032"}


id: PBO:0044800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 4A","termid":"PBO:0044800"}


id: SO:0001841
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A pseudogene in the reference genome, though known to be intact in the genomes of other individuals of the same species. The annotation process has confirmed that the pseudogenisation event is not a genomic sequencing error.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html","JAX:hd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudogene","termid":"SO:0000336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polymorphic_pseudogene","synonyms":[{"name":"polymorphic psuedogene","type":"exact"}],"termid":"SO:0001841"}


id: GO:0102715
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: gibberellin A17 + 2-oxoglutarate + O2 = gibberellin A28 + succinate + carbon dioxide.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete gibberellin A17,oxoglutarate:oxygen oxidoreductase activity (obsolete GO:0102715)","termid":"GO:0102715"}


id: GO:0030743
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: adenosine(1067) in 23S rRNA + S-adenosyl-L-methionine = 2'-O-methyladenosine(1067) in 23S rRNA + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.230"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA (adenine) methyltransferase activity","termid":"GO:0016433"},{"relation_name":"is_a","term_name":"RNA 2'-O-methyltransferase activity","termid":"GO:0062105"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0140098","GO:0003824","GO:0016741"],"is_obsolete":false,"name":"23S rRNA (adenosine(1067)-2'-O)-methyltransferase activity","secondary_identifiers":["RHEA:43212","MetaCyc:RXN-12464"],"synonyms":[{"name":"RNA-pentose methylase activity","type":"related"},{"name":"S-adenosyl-L-methionine:rRNA (adenosine-2'-O)-methyltransferase activity","type":"related"},{"name":"rRNA adenosine 2'-methylase activity","type":"related"},{"name":"ribosomal ribonucleate adenosine 2'-methyltransferase activity","type":"related"},{"name":"thiostrepton-resistance methylase activity","type":"narrow"}],"termid":"GO:0030743"}


id: PATO:0001719
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A behavioral quality which holds by virtue of whether the bearer exhibits the ability to receive another agentitive entity.","definition_xrefs":["PATOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"behavioral quality","termid":"PATO:0000186"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"receptivity","termid":"PATO:0001719"}


id: PBO:0073016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium channel epithelial 1 subunit gamma","termid":"PBO:0073016"}


id: PBO:0041270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1q like 2","termid":"PBO:0041270"}


id: MONDO:0025518
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A allergic disease involving a acetylsalicylic acid.","definition_xrefs":["MONDO:patterns/allergy"],"gene_count":0,"genotype_count":0,"name":"obsolete aspirin allergy (obsolete MONDO:0025518)","secondary_identifiers":["DOID:0040002","ICD9:995.27","IEDB:RV","SCTID:293586001"],"synonyms":[{"name":"ASA allergy","type":"exact"},{"name":"acetylsalicylic acid allergic disease","type":"exact"},{"name":"acetylsalicylic acid allergy","type":"exact"},{"name":"allergy of acetylsalicylic acid","type":"exact"}],"termid":"MONDO:0025518","xrefs":{"Monarch":{"xref_id":"0025518"}}}


id: GO:0060395
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An intracellular signaling cassette that starts with the activation of a SMAD protein, leading to the formation of a complex with co-SMADs, which translocates to the nucleus and regulates transcription of specific target genes.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular signaling cassette","termid":"GO:0141124"},{"relation_name":"part_of","term_name":"cell surface receptor protein serine/threonine kinase signaling pathway","termid":"GO:0007178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"SMAD protein signal transduction","termid":"GO:0060395"}


id: PBO:0002961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GARP complex subunit Vps51 (predicted)","termid":"PBO:0002961"}


id: MONDO:0007084
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"alopecia, isolated","termid":"MONDO:0000005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"familial focal alopecia","secondary_identifiers":["UMLS:C1863092","OMIM:104110","MEDGEN:350835","MESH:C566301"],"synonyms":[{"name":"ALPF","type":"related"},{"name":"alopecia, familial focal","type":"exact"}],"termid":"MONDO:0007084","xrefs":{"Monarch":{"xref_id":"0007084"}}}


id: PBO:0051123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 1/OR16-1 (pseudogene)","termid":"PBO:0051123"}


id: GO:0006543
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-glutamine, 2-amino-4-carbamoylbutanoic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamine metabolic process","termid":"GO:0006541"},{"relation_name":"is_a","term_name":"glutamine family amino acid catabolic process","termid":"GO:0009065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"L-glutamine catabolic process","synonyms":[{"name":"glutamine breakdown","type":"exact"},{"name":"glutamine catabolism","type":"exact"},{"name":"glutamine degradation","type":"exact"}],"termid":"GO:0006543"}


id: PBO:0051118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 1/OR15-3 (pseudogene)","termid":"PBO:0051118"}


id: MONDO:0008953
data:
  {"annotated_genes":["SJAG_02619"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88685],"is_not":false,"summary":null,"term":"MONDO:0008953"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"peroxisome biogenesis disorder","termid":"MONDO:0019234"},{"relation_name":"is_a","term_name":"peroxisome biogenesis disorder due to PEX1 defect","termid":"MONDO:0100259"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02619":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0019053"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0006025","MONDO:0005244","MONDO:0019053","MONDO:0005066"],"is_obsolete":false,"name":"peroxisome biogenesis disorder 1A (Zellweger)","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1648474","OMIM:214100","DOID:0080476","UMLS:C4721541"],"synonyms":[{"name":"Cerebrohepatorenal syndrome","type":"related"},{"name":"PBD1A","type":"related"},{"name":"Zs","type":"related"},{"name":"peroxisome biogenesis disorder 1A (Zellweger)","type":"exact"},{"name":"peroxisome biogenesis disorder, complementation group 1","type":"related"},{"name":"peroxisome biogenesis disorder, complementation group E","type":"related"}],"termid":"MONDO:0008953","terms_by_termid":{"MONDO:0008953":null},"xrefs":{"Monarch":{"xref_id":"0008953"}}}


id: PBO:0074153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 35 member E2A (pseudogene)","termid":"PBO:0074153"}


id: GO:0031098
data:
  {"annotated_genes":["SJAG_03969","SJAG_04551","SJAG_05000","SJAG_00424","SJAG_02392","SJAG_04522","SJAG_03263","SJAG_00610","SJAG_04666","SJAG_01181","SJAG_04825","SJAG_01787","SJAG_01114","SJAG_03705","SJAG_03753"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104073,66244,112961],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000196"},{"annotations":[109569,109001,97752,101355,105734,120346],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1903138"},{"annotations":[89941,69403,92641,94299,119920,91307],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1903139"}]},"cv_name":"biological_process","definition":"The series of molecular signals in which a stress-activated protein kinase (SAPK) cascade relays a signal.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to stress","termid":"GO:0033554"},{"relation_name":"is_a","term_name":"intracellular signal transduction","termid":"GO:0035556"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00424":null,"SJAG_00610":null,"SJAG_01114":null,"SJAG_01181":null,"SJAG_01787":null,"SJAG_02392":null,"SJAG_03263":null,"SJAG_03705":null,"SJAG_03753":null,"SJAG_03969":null,"SJAG_04522":null,"SJAG_04551":null,"SJAG_04666":null,"SJAG_04825":null,"SJAG_05000":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"stress-activated protein kinase signaling cascade","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"JNK signaling pathway","type":"narrow"},{"name":"JNK signalling pathway","type":"narrow"},{"name":"SAPK signaling pathway","type":"exact"},{"name":"SAPK signalling pathway","type":"exact"},{"name":"stress-activated protein kinase signaling pathway","type":"exact"},{"name":"stress-activated protein kinase signalling pathway","type":"exact"}],"termid":"GO:0031098","terms_by_termid":{"GO:0000196":null,"GO:1903138":null,"GO:1903139":null}}


id: GO:0099122
data:
  {"annotated_genes":["SJAG_00448","SJAG_04933","SJAG_03118"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[66378],"is_not":false,"summary":null,"term":"GO:0099122"},{"annotations":[79977,74286],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990269"}]},"cv_name":"molecular_function","definition":"Binding to the C-terminal domain (CTD) of the largest subunit of RNA polymerase II. The CTD is comprised of repeats of a heptapeptide with the consensus sequence YSPTSPS. The number of repeats varies with the species and a minimum number of repeats is required for RNAP II function.","definition_xrefs":["PMID:20889714"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II complex binding","termid":"GO:0000993"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00448":null,"SJAG_03118":null,"SJAG_04933":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"RNA polymerase II C-terminal domain binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"synonyms":[{"name":"RNAP II C-terminal binding","type":"exact"}],"termid":"GO:0099122","terms_by_termid":{"GO:0099122":null,"GO:1990269":null}}


id: MONDO:0004747
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital abnormality consisting of one or more clefts (splits) in the upper lip, which may be accompanied by a cleft palate; it is the result of the failure of the embryonic parts of the lip to fuse.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orofacial cleft","termid":"MONDO:0000358"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cleft lip","secondary_identifiers":["DOID:9296","ICD9:749.10","MESH:D002971","HP:0410030","NCIT:C87175","ICD9:749.1","SCTID:80281008","ICD9:749.11","MEDGEN:1370297","UMLS:C4321245"],"synonyms":[{"name":"cheiloschisis","type":"exact"},{"name":"cleft lip","type":"exact"},{"name":"cleft lip (disease)","type":"exact"},{"name":"cleft lip, unilateral, complete","type":"exact"},{"name":"complete unilateral cleft lip","type":"exact"},{"name":"hare lip","type":"exact"},{"name":"labium leporinum","type":"exact"}],"termid":"MONDO:0004747","xrefs":{"Monarch":{"xref_id":"0004747"}}}


id: PBO:0026907
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_chromatin_at_chromosome_arms","termid":"PBO:0026907"}


id: MONDO:0007342
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The most common congenital deformation of the foot, occurring in 1 of 1,000 live births. The most common form is talipes equinovarus, where the deformed foot is turned downward and inward sharply.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial clubfoot with or without associated lower limb anomalies","termid":"MONDO:0016046"},{"relation_name":"is_a","term_name":"non-syndromic limb reduction defect","termid":"MONDO:0019713"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clubfoot","secondary_identifiers":["ICD9:754.51","MESH:D003025","UMLS:C0009081","MEDGEN:3130","OMIM:119800","DOID:11836","SCTID:397932003","NCIT:C84641"],"synonyms":[{"name":"CCF","type":"related"},{"name":"club foot","type":"exact"},{"name":"clubbed foot","type":"exact"},{"name":"clubfoot, congenital, with or without deficiency of long bones and/or mirror-IMAGE polydactyly","type":"related"},{"name":"congenital clubfoot","type":"exact"},{"name":"congenital equinovarus","type":"exact"},{"name":"congenital talipes equinovarus","type":"exact"},{"name":"equinovarus deformity of foot","type":"exact"},{"name":"equinovarus deformity of foot (finding)","type":"exact"},{"name":"talipes","type":"exact"},{"name":"talipes equinovarus","type":"exact"}],"termid":"MONDO:0007342","xrefs":{"Monarch":{"xref_id":"0007342"}}}


id: PBO:0087948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Translation initiation factor eIF4E; mRNA cap binding protein and subunit of the mRNA cap-binding complex (eIF4F) along with eIF4A (Tif1p/Tif2p) and eIF4G (Tif4631p/Tif4632p), that mediates cap-dependent translation; required with eIF4G for Ded1p-mediated stimulation of mRNA recruitment during 48S preinitiation complex (PIC) assembly; protein abundance increases in response to DNA replication stress; human homolog EIF4E can complement the cdc33 null mutant","termid":"PBO:0087948"}


id: PBO:0000279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA pseudouridylate synthase (predicted)","termid":"PBO:0000279"}


id: GO:0050839
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a cell adhesion molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"cell adhesion molecule binding","synonyms":[{"name":"CAM binding","type":"exact"},{"name":"adhesive extracellular matrix constituent","type":"related"},{"name":"cell adhesion molecule activity","type":"related"},{"name":"cell adhesion receptor activity","type":"related"}],"termid":"GO:0050839"}


id: MONDO:0009251
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fructose-1,6-biphosphatase (FBP) deficiency is a disorder of fructose metabolism characterized by recurrent episodes of fasting hypoglycemia with lactic acidosis, that may be life-threatening in neonates and infants.","definition_xrefs":["Orphanet:348"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"disorder of fructose metabolism","termid":"MONDO:0017689"},{"relation_name":"is_a","term_name":"disorder of gluconeogenesis","termid":"MONDO:0019225"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005066"],"is_obsolete":false,"name":"fructose-1,6-bisphosphatase deficiency","secondary_identifiers":["SCTID:28183005","UMLS:C0016756","NCIT:C128119","OMIM:229700","DOID:5204","GARD:2400","MEDGEN:42106","NANDO:2200535"],"synonyms":[{"name":"FBP1D","type":"related"},{"name":"baker-Winegrad disease","type":"related"},{"name":"fructose 1 phosphate aldolase deficiency","type":"exact"},{"name":"fructose 1,6 diphosphatase deficiency","type":"related"},{"name":"fructose-1,6-bisphosphatase deficiency","type":"exact"},{"name":"fructose-1,6-diphosphatase deficiency","type":"exact"}],"termid":"MONDO:0009251","xrefs":{"Monarch":{"xref_id":"0009251"}}}


id: GO:0021900
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of neuroblast to become a basal progenitor cell. Basal progenitor cells are neuronal precursor cells that are committed to becoming neurons.","definition_xrefs":["PMID:16226447","GO_REF:0000021","GOC:dgh","GOC:cls","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"commitment of multipotent stem cells to neuronal lineage in forebrain","termid":"GO:0021898"},{"relation_name":"part_of","term_name":"forebrain neuroblast differentiation","termid":"GO:0021863"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventricular zone cell fate commitment","termid":"GO:0021900"}


id: MONDO:0005786
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Virus diseases caused by the hepadnaviridae.","definition_xrefs":["MESH:D018347"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary viral infectious disease","termid":"MONDO:0100329"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hepadnaviridae infectious disease","secondary_identifiers":["MEDGEN:64649","UMLS:C0206746"],"synonyms":[{"name":"Hepadnaviridae caused disease or disorder","type":"exact"},{"name":"Hepadnaviridae disease or disorder","type":"exact"}],"termid":"MONDO:0005786","xrefs":{"Monarch":{"xref_id":"0005786"}}}


id: GO:0097014
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"All of the contents of a cilium, excluding the plasma membrane surrounding the cilium.","definition_xrefs":["GOC:cilia","GOC:dos","PMID:17895364","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection cytoplasm","termid":"GO:0032838"},{"relation_name":"part_of","term_name":"cilium","termid":"GO:0005929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"ciliary plasm","synonyms":[{"name":"cilial cytoplasm","type":"related"},{"name":"ciliary cytoplasm","type":"related"},{"name":"cilium cytoplasm","type":"related"},{"name":"cilium plasm","type":"exact"},{"name":"microtubule-based flagellar cytoplasm","type":"related"},{"name":"microtubule-based flagellar matrix","type":"narrow"},{"name":"microtubule-based flagellum cytoplasm","type":"related"},{"name":"microtubule-based flagellum matrix","type":"narrow"}],"termid":"GO:0097014"}


id: PBO:0079285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin tyrosine ligase like 4","termid":"PBO:0079285"}


id: MONDO:0018148
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Vasoproliferative tumor of the retina is a rare, benign, retinal vascular disease characterized by solitary or multiple, unilateral or bilateral, intra-retinal tumor(s), usually located in the peripheral infero-temporal quadrant, and often associated with sub- and intraretinal exudates, epiretinal membranes, exudative retinal detachment and cystoid macular edema, as well as, occasionally, retinal and vitreous hemorrhage. Patients may present with visual loss, floaters, and/or photopsia. Association with various conditions, such as retinitis pigmentosa, congenital retinal toxoplasmosis, retinopathy of prematurity, or coloboma, has been reported.","definition_xrefs":["Orphanet:353356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinal vascular disorder","termid":"MONDO:0002311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"vasoproliferative tumor of retina","secondary_identifiers":["GARD:21533","UMLS:C4749792","MEDGEN:1652844"],"synonyms":[{"name":"VPTR","type":"exact"},{"name":"retinal vasoproliferative tumor","type":"exact"},{"name":"retinal vasoproliferative tumour","type":"exact"},{"name":"vasoproliferative tumor of ocular fundus","type":"exact"},{"name":"vasoproliferative tumor of the ocular fundus","type":"exact"},{"name":"vasoproliferative tumor of the retina","type":"related"},{"name":"vasoproliferative tumour of ocular fundus","type":"exact"},{"name":"vasoproliferative tumour of the ocular fundus","type":"exact"},{"name":"vasoproliferative tumour of the retina","type":"related"}],"termid":"MONDO:0018148","xrefs":{"Monarch":{"xref_id":"0018148"}}}


id: GO:0008466
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-glucose + glycogenin = UDP + glucosylglycogenin. This first reaction is a self glucosylation. Further UDP-glucose goups are added to the [1,4-alpha-D-glucosyl](n) group of glycogenin until a length of about 5-13 residues.","definition_xrefs":["EC:2.4.1.186"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"glycogenin glucosyltransferase activity","secondary_identifiers":["Reactome:R-HSA-3322003","Reactome:R-HSA-3322025","Reactome:R-HSA-3814838","GO:0047210","Reactome:R-HSA-3322014","Reactome:R-HSA-3322019"],"synonyms":[{"name":"1,4alpha-glucan-protein synthase (UDP-forming) activity","type":"exact"},{"name":"UDP-alpha-D-glucose:glycogenin alpha-D-glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:glycogenin glucosyltransferase activity","type":"related"},{"name":"alpha-1,4-glucan-protein synthase (UDP-forming) activity","type":"exact"},{"name":"glycogenin activity","type":"related"},{"name":"priming glucosyltransferase activity","type":"related"}],"termid":"GO:0008466"}


id: MONDO:0024421
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short stature contractures hypotonia","synonyms":[{"name":"Hennekam Koss de Geest syndrome","type":"related"}],"termid":"MONDO:0024421","xrefs":{"Monarch":{"xref_id":"0024421"}}}


id: GO:0097224
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The segment of the sperm flagellum that attaches to the implantation fossa of the nucleus in the sperm head; from the remnant of the centriole at this point, the axoneme extends throughout the length of the flagellum.","definition_xrefs":["GOC:cjm","MP:0009830"],"gene_count":0,"genotype_count":0,"name":"obsolete sperm connecting piece (obsolete GO:0097224)","termid":"GO:0097224"}


id: MONDO:0018673
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Idiopathic hypertrophic pachymeningitis (IHP) is a rare disorder causing inflammation and thickening of the outer layer (dura) of the brain and/or spinal cord. IHP can be widespread or cause tumor-like lesions. Before IHP can be diagnosed, other conditions including sarcoidosis, tumors, meningioma, infections (syphilis, tuberculosis, and Lyme disease), and autoimmune diseases (rheumatoid arthritis, Sjogrenbs syndrome, Wegenerbs granulomatosis, and IgG4-related disease) must be ruled out. IHP often presents with headache and cranial nerve impairment. Treatment may involve prednisone and/or an immune suppressing drug. This treatment often improves symptoms, however complete recovery is rare. Surgery may be recommended for people with advanced or severe IHP. Some people with IHP have no symptoms and may not need treatment.","definition_xrefs":["GARD:0013256"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin G4-related sclerosing disease","termid":"MONDO:0017287"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"IgG4-related pachymeningitis","secondary_identifiers":["UMLS:C4545992","icd11.foundation:1140264879","SCTID:762282007","GARD:13256","MEDGEN:1627405","Orphanet:449427"],"synonyms":[{"name":"idiopathic hypertrophic cranial pachymeningitis","type":"related"},{"name":"idiopathic hypertrophic craniospinal pachymeningitis","type":"related"},{"name":"idiopathic hypertrophic pachymeningitis","type":"exact"},{"name":"idiopathic hypertrophic spinal pachymeningitis","type":"related"}],"termid":"MONDO:0018673","xrefs":{"Monarch":{"xref_id":"0018673"}}}


id: FYPO:0000875
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromere inner repeat regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K9 dimethylation at centromere inner repeat during vegetative growth","termid":"FYPO:0000868"},{"relation_name":"is_a","term_name":"increased histone H3-K9 dimethylation at centromere during vegetative growth","termid":"FYPO:0000874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002274","FYPO:0002494","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased histone H3-K9 dimethylation at centromere inner repeat during vegetative growth","synonyms":[{"name":"increased histone H3 K9 dimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 dimethylation at centromere imr during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 dimethylation at centromere inner repeat during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 dimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"increased histone H3K9me2 at centromere inner repeat during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 dimethylation at centromere inner repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0000875"}


id: PBO:0043287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-type lectin domain containing 5A","termid":"PBO:0043287"}


id: GO:2001086
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a laminarabioseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mengo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete laminarabiose transport (obsolete GO:2001086)","termid":"GO:2001086"}


id: PBO:0070309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY1 pseudogene 15","termid":"PBO:0070309"}


id: MONDO:0015191
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"chronic intestinal pseudoobstruction","termid":"MONDO:0017574"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"myopathic intestinal pseudoobstruction","secondary_identifiers":["icd11.foundation:1007742014","GARD:19853","Orphanet:104077","UMLS:C5681739","MEDGEN:1843444"],"termid":"MONDO:0015191","xrefs":{"Monarch":{"xref_id":"0015191"}}}


id: MONDO:0032655
data:
  {"annotated_genes":["SJAG_02838"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88096],"is_not":false,"summary":null,"term":"MONDO:0032655"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02838":null},"genotype_count":0,"is_obsolete":false,"name":"visual impairment and progressive phthisis bulbi","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0070356","OMIM:618283","MEDGEN:1648430","UMLS:C4748978"],"synonyms":[{"name":"VIPB","type":"related"},{"name":"VISUAL IMPAIRMENT AND PROGRESSIVE PHTHISIS BULBI","type":"related"}],"termid":"MONDO:0032655","terms_by_termid":{"MONDO:0032655":null},"xrefs":{"Monarch":{"xref_id":"0032655"}}}


id: PBO:0078700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon CAA) 2-1","termid":"PBO:0078700"}


id: GO:1904877
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of DNA ligase activity.","definition_xrefs":["GOC:TermGenie","PMID:17389648","GOC:BHF_telomere","GO_REF:0000059","GOC:BHF","GOC:rl"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of DNA ligase activity (obsolete GO:1904877)","synonyms":[{"name":"activation of DNA ligase activity","type":"narrow"},{"name":"up regulation of DNA ligase activity","type":"exact"},{"name":"up-regulation of DNA ligase activity","type":"exact"},{"name":"upregulation of DNA ligase activity","type":"exact"}],"termid":"GO:1904877"}


id: PBO:0071661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37a pseudogene 2","termid":"PBO:0071661"}


id: PBO:0109952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 51 member A","termid":"PBO:0109952"}


id: PBO:0027846
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-swollen_multinucleate_vegetative_cell","termid":"PBO:0027846"}


id: PBO:0046784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EYA transcriptional coactivator and phosphatase 4","termid":"PBO:0046784"}


id: GO:0150136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of interleukin-37 production.","definition_xrefs":["PMID:30362558","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"interleukin-37 production","termid":"GO:0150137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of interleukin-37 production","synonyms":[{"name":"regulation of interleukin-37 biosynthetic process","type":"narrow"}],"termid":"GO:0150136"}


id: PBO:0089254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"siroheme synthase Met8","termid":"PBO:0089254"}


id: PR:P36623
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC26F1.06","secondary_identifiers":["UniProtKB:P36623"],"synonyms":[{"name":"BPG-dependent PGAM (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"MPGM (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PGAM (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Phosphoglyceromutase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPAC26F1.06","type":"related"},{"name":"Spom972h-gpmA","type":"exact"}],"termid":"PR:P36623"}


id: MONDO:0022337
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AIDS dysmorphic syndrome","secondary_identifiers":["MEDGEN:1843488","UMLS:C5243926"],"termid":"MONDO:0022337","xrefs":{"Monarch":{"xref_id":"0022337"}}}


id: FYPO:0004843
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has two nuclei and more than one septum, and the septa are grouped together between two compartments, one contains both nuclei.","definition_xrefs":["PMID:25203555","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiseptate vegetative cell","termid":"FYPO:0000118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000032"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0000032","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"multiseptate vegetative cell with binucleate and anucleate compartments","synonyms":[{"name":"multiseptate cell with binucleate and anucleate compartments during vegetative growth","type":"exact"},{"name":"multiseptate vegetative cell with binucleate and anucleate compartments during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004843"}


id: GO:0099534
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The directed change of presynaptic cytosolic free calcium ion concentration in the cytosol via the reversible binding of calcium ions to calcium-binding proteins in the cytosol thereby modulating the spatial and temporal dynamics of changes in presynaptic cytosolic calcium concentrations.","definition_xrefs":["PMID:26190970","PMID:24442513"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium ion binding involved in regulation of cytosolic calcium ion concentration","termid":"GO:0099510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0046872"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0046872","GO:0005488"],"is_obsolete":false,"name":"calcium ion binding involved in regulation of presynaptic cytosolic calcium ion concentration","synonyms":[{"name":"calcium ion binding involved in regulation of presynaptic cytosolic calcium levels","type":"exact"},{"name":"presynaptic calcium ion buffering","type":"exact"},{"name":"regulation of presynaptic cytosolic calcium ion concentration by calcium ion buffering","type":"exact"}],"termid":"GO:0099534"}


id: MONDO:0004575
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition produced by a deficiency of choline in animals. Choline is known as a lipotropic agent because it has been shown to promote the transport of excess fat from the liver under certain conditions in laboratory animals. Combined deficiency of choline (included in the B vitamin complex) and all other methyl group donors causes liver cirrhosis in some animals. Unlike compounds normally considered as vitamins, choline does not serve as a cofactor in enzymatic reactions. (From Saunders Dictionary & Encyclopedia of Laboratory Medicine and Technology, 1984)","definition_xrefs":["MESH:D002796"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nutritional deficiency disease","termid":"MONDO:0006873"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"choline deficiency disease","secondary_identifiers":["DOID:8456","UMLS:C0008412","SCTID:238113006","MEDGEN:930","ICD9:266.2"],"synonyms":[{"name":"choline deficiency","type":"exact"}],"termid":"MONDO:0004575","xrefs":{"Monarch":{"xref_id":"0004575"}}}


id: PATO:0000855
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000855 corneal reflex value (obsolete PATO:0000855)","termid":"PATO:0000855"}


id: MONDO:1011685
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hematologic disorder, non-human animal","termid":"MONDO:1011319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bleeding disorder, non-human animal","secondary_identifiers":["OMIA:000112","OMIA:000113"],"synonyms":[{"name":"bleeding diathesis, non-human animal","type":"exact"}],"termid":"MONDO:1011685","xrefs":{"Monarch":{"xref_id":"1011685"}}}


id: PBO:0049285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase alpha 4","termid":"PBO:0049285"}


id: PBO:0074148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 35 member D1","termid":"PBO:0074148"}


id: GO:0140588
data:
  {"annotated_genes":["SJAG_01067","SJAG_01831","SJAG_05019","SJAG_00682","SJAG_03418","SJAG_00796","SJAG_03926","SJAG_02606"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89668,91544,92795,98145,109695,109779,112530,118870],"is_not":false,"summary":null,"term":"GO:0140588"}]},"cv_name":"biological_process","definition":"A chromatin organization process that starts with the loading of an extrusion motor (by an SMC family complex) onto the chromatin, followed by chromatin extrusion that stops at loop anchoring sites on the chromosome.","definition_xrefs":["PMID:32213323"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin organization","termid":"GO:0006325"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00682":null,"SJAG_00796":null,"SJAG_01067":null,"SJAG_01831":null,"SJAG_02606":null,"SJAG_03418":null,"SJAG_03926":null,"SJAG_05019":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006325"],"is_obsolete":false,"name":"chromatin looping","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"DNA loop extrusion","type":"exact"},{"name":"DNA looping","type":"broad"},{"name":"chromatin folding","type":"related"},{"name":"chromatin loop assembly","type":"exact"}],"termid":"GO:0140588","terms_by_termid":{"GO:0140588":null}}


id: PBO:0062549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 9 subfamily N member 1 pseudogene","termid":"PBO:0062549"}


id: MONDO:0007424
data:
  {"annotated_genes":["SJAG_01943","SJAG_00279"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87163,87164],"is_not":false,"summary":null,"term":"MONDO:0007424"}]},"cv_name":"mondo","definition":"Any autosomal dominant nonsyndromic deafness in which the cause of the disease is a mutation in the DIAPH1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_01943":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0000426"],"is_obsolete":false,"name":"autosomal dominant nonsyndromic hearing loss 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C1852282","DOID:0110541","OMIM:124900","MEDGEN:343767","MESH:C565121"],"synonyms":[{"name":"DFNA1","type":"narrow"},{"name":"DIAPH1 autosomal dominant nonsyndromic deafness","type":"narrow"},{"name":"Konigsmark syndrome","type":"exact"},{"name":"LFHL1","type":"exact"},{"name":"autosomal dominant deafness 1","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness 1","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness caused by mutation in DIAPH1","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness type 1","type":"narrow"},{"name":"deafness, autosomal dominant 1","type":"narrow"},{"name":"deafness, autosomal dominant 1, with or without thrombocytopenia","type":"narrow"},{"name":"deafness, autosomal dominant type 1","type":"narrow"},{"name":"deafness, progressive Low tone","type":"narrow"},{"name":"hereditary Low frequency hearing loss","type":"related"},{"name":"hereditary low frequency hearing loss 1","type":"exact"}],"termid":"MONDO:0007424","terms_by_termid":{"MONDO:0007424":null},"xrefs":{"Monarch":{"xref_id":"0007424"}}}


id: PBO:0001934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor Thi1","termid":"PBO:0001934"}


id: PBO:0113757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein, OB fold, predicted role in DNA metabolism","termid":"PBO:0113757"}


id: PATO:0001752
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A heterochronic growth quality inhering in an organism, structure, or group of organisms by virtue of the bearer's increased growth.","definition_xrefs":["PATOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterochronic growth","termid":"PATO:0001490"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peramorphic growth","synonyms":[{"name":"hyperplastic growth","type":"exact"}],"termid":"PATO:0001752"}


id: GO:0120313
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of oocyte karyosome formation, the chromosome organization process in which meiotic chromosomes in the oocyte nucleus cluster together to form a compact spherical structure called the karyosome.","definition_xrefs":["PMID:33382409","GOC:ha","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"is_a","term_name":"regulation of chromosome organization","termid":"GO:0033044"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"oocyte karyosome formation","termid":"GO:0030717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"regulation of oocyte karyosome formation","termid":"GO:0120313"}


id: GO:0060194
data:
  {"annotated_genes":["SJAG_00266"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109932],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060195"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the synthesis of antisense RNA, an RNA molecule complementary in sequence to another RNA or DNA molecule, which, by binding the latter, acts to inhibit its function and/or completion of synthesis, on a template of DNA.","definition_xrefs":["PMID:18075583","GOC:tb","GOC:dph","GOC:jp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated transcription","termid":"GO:0006355"},{"relation_name":"regulates","term_name":"antisense RNA transcription","termid":"GO:0009300"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00266":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0006355","GO:0008150","GO:0006351"],"is_obsolete":false,"name":"regulation of antisense RNA transcription","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0060194","terms_by_termid":{"GO:0060195":null}}


id: PBO:0045297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynamin 1 pseudogene 49","termid":"PBO:0045297"}


id: PBO:0042362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD151 molecule (Raph blood group)","termid":"PBO:0042362"}


id: PBO:0086232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that interacts with glycerol 3-phosphatase; plays a role in anaerobic glycerol production; localizes to the nucleus and cytosol","termid":"PBO:0086232"}


id: PBO:0040094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP-ribosyltransferase 1","termid":"PBO:0040094"}


id: PBO:0054004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1332","termid":"PBO:0054004"}


id: PBO:0079973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 11","termid":"PBO:0079973"}


id: GO:0034685
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An integrin complex that comprises one alphav subunit and one beta6 subunit.","definition_xrefs":["PMID:12297042"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integrin complex","termid":"GO:0008305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"integrin alphav-beta6 complex","synonyms":[{"name":"ITGAV-ITGB6 complex","type":"narrow"},{"name":"alphav-beta6 integrin complex","type":"exact"}],"termid":"GO:0034685"}


id: GO:0099006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The entry of a symbiont into a host cell, following endocytosis, via permeabilization of the endosomal membrane by membrane penetration protein(s) of the symbiont. This process mediates the entry of some non-enveloped virus into eukaryotic cells. In some cases, viral membrane-penetration protein requires to be activated to display its membrane penetrating activity. Activation can be due to receptor binding or the acidic pH of the endosomal lumen.","definition_xrefs":["PMID:25055856","PMID:15329727"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont entry into host cell via permeabilization of host membrane","termid":"GO:0140267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont entry into host cell via permeabilization of endosomal membrane","synonyms":[{"name":"viral entry via permeabilization of endosomal membrane","type":"narrow"}],"termid":"GO:0099006"}


id: GO:0102063
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate(3-) = diphosphoric acid + (-)-beta-curcumene.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete beta-curcumene synthase activity (obsolete GO:0102063)","termid":"GO:0102063"}


id: MONDO:0859204
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fetal akinesia, respiratory insufficiency, microcephaly, polymicrogyria, and dysmorphic facies","secondary_identifiers":["OMIM:619602","MEDGEN:1794225","UMLS:C5562015"],"termid":"MONDO:0859204","xrefs":{"Monarch":{"xref_id":"0859204"}}}


id: PBO:0079328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 16","termid":"PBO:0079328"}


id: MONDO:0044250
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete tongue curling, folding, or rolling (obsolete MONDO:0044250)","secondary_identifiers":["OMIM:189300"],"synonyms":[{"name":"cloverleaf tongue","type":"related"},{"name":"tongue curling, folding, or rolling","type":"related"},{"name":"trefoil tongue","type":"related"}],"termid":"MONDO:0044250","xrefs":{"Monarch":{"xref_id":"0044250"}}}


id: MONDO:0023067
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Kaposi's sarcoma","termid":"MONDO:0005055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"endemic Kaposi sarcoma","secondary_identifiers":["UMLS:C1275231","MEDGEN:698516","icd11.foundation:509381237","GARD:10431"],"synonyms":[{"name":"African Kaposi sarcoma","type":"related"},{"name":"African/endemic Kaposi sarcoma","type":"related"}],"termid":"MONDO:0023067","xrefs":{"Monarch":{"xref_id":"0023067"}}}


id: MONDO:0037252
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An ovarian or testicular stromal tumor characterized by the presence of lipid-rich neoplastic spindle cells. In females, uterine bleeding is the most common symptom. A minority of post-menopausal women with thecoma have an associated endometrial adenocarcinoma or rarely a malignant mixed mullerian tumor or endometrial stromal sarcoma. Rare cases with nuclear atypia and mitotic activity may metastasize. In males, thecomas are rare and they usually present as slow growing, sometimes painful masses. Metastases have not been reported.","definition_xrefs":["NCIT:C3405"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sex cord-stromal tumor","termid":"MONDO:0006055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thecoma","secondary_identifiers":["ICDO:8600/0","MESH:D013798","UMLS:C0039747","MEDGEN:21505"],"synonyms":[{"name":"thecoma","type":"exact"}],"termid":"MONDO:0037252","xrefs":{"Monarch":{"xref_id":"0037252"}}}


id: GO:2000440
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of toll-like receptor 15 signaling pathway.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pattern recognition receptor signaling pathway","termid":"GO:0062207"},{"relation_name":"regulates","term_name":"toll-like receptor 15 signaling pathway","termid":"GO:0035681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of toll-like receptor 15 signaling pathway","synonyms":[{"name":"regulation of TLR15 signaling pathway","type":"exact"},{"name":"regulation of toll-like receptor 15 signalling pathway","type":"exact"}],"termid":"GO:2000440"}


id: GO:0070485
data:
  {"annotated_genes":["SJAG_00265"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103398],"is_not":false,"summary":null,"term":"GO:0070485"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of dehydro-D-arabinono-1,4-lactone, the gamma-lactone (5R)-3,4-dihydroxy-5-(hydroxymethyl)furan-2(5H)-one.","definition_xrefs":["GOC:mah","GOC:cjk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dehydro-D-arabinono-1,4-lactone metabolic process","termid":"GO:0070484"},{"relation_name":"is_a","term_name":"lactone biosynthetic process","termid":"GO:1901336"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00265":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dehydro-D-arabinono-1,4-lactone biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"dehydro-D-arabinono-1,4-lactone anabolism","type":"exact"},{"name":"dehydro-D-arabinono-1,4-lactone biosynthesis","type":"exact"},{"name":"dehydro-D-arabinono-1,4-lactone formation","type":"exact"},{"name":"dehydro-D-arabinono-1,4-lactone synthesis","type":"exact"}],"termid":"GO:0070485","terms_by_termid":{"GO:0070485":null}}


id: GO:0018250
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of peptidyl-dehydroalanine from either peptidyl-tyrosine by phenyl transfer, or from peptidyl-serine, which is coupled with the formation of 5-imidazolinone by the two neighboring residues, produces an 4-methylidene-imidazole-5-one active site of some amino acid ammonia-lyases; the 4-methylidene-imidazole-5-one, is formed autocatalytically by cyclization and dehydration of the sequence ASG.","definition_xrefs":["RESID:AA0181"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-dehydroalanine biosynthetic process from peptidyl-tyrosine or peptidyl-serine (obsolete GO:0018250)","synonyms":[{"name":"peptidyl-dehydroalanine anabolism from peptidyl-tyrosine or peptidyl-serine","type":"exact"},{"name":"peptidyl-dehydroalanine formation from peptidyl-tyrosine or peptidyl-serine","type":"exact"},{"name":"peptidyl-dehydroalanine synthesis from peptidyl-tyrosine or peptidyl-serine","type":"exact"}],"termid":"GO:0018250"}


id: PBO:0067102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 144, pseudogene","termid":"PBO:0067102"}


id: MONDO:0041448
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"malignant colon neoplasm","termid":"MONDO:0021063"},{"relation_name":"is_a","term_name":"metastatic malignant neoplasm","termid":"MONDO:0024880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"metastasis from malignant tumor of colon","secondary_identifiers":["UMLS:C1282500","MEDGEN:705366","SCTID:314998002"],"synonyms":[{"name":"metastasis from malignant tumor of colon","type":"exact"}],"termid":"MONDO:0041448","xrefs":{"Monarch":{"xref_id":"0041448"}}}


id: PBO:0001581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic spindle checkpoint protein Bub3","termid":"PBO:0001581"}


id: PBO:0067641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 814, pseudogene","termid":"PBO:0067641"}


id: GO:0009253
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls and consisting of long glycan strands of alternating residues of beta-(1,4) linked N-acetylglucosamine and N-acetylmuramic acid, cross-linked by short peptides.","definition_xrefs":["PMID:9158729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidoglycan metabolic process","termid":"GO:0000270"},{"relation_name":"is_a","term_name":"glycosaminoglycan catabolic process","termid":"GO:0006027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidoglycan catabolic process","secondary_identifiers":["GO:0009286"],"synonyms":[{"name":"murein catabolic process","type":"exact"},{"name":"murein catabolism","type":"exact"},{"name":"peptidoglycan breakdown","type":"exact"},{"name":"peptidoglycan catabolism","type":"exact"},{"name":"peptidoglycan degradation","type":"exact"}],"termid":"GO:0009253"}


id: GO:1990045
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the sclerotium over time, from its formation to the mature structure. A sclerotium is a mycelial resting body, resistant to adverse environmental conditions.","definition_xrefs":["GOC:di","PMID:21148914"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sclerotium development","termid":"GO:1990045"}


id: FYPO:0002026
data:
  {"alleles_by_uniquename":{"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121456],"is_not":false,"summary":null,"term":"FYPO:0002026"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell forms an actomyosin contractile ring that is perpendicular to the long axis of the cell, but is not located at the midpoint of the long axis.","definition_xrefs":["PomBase:mah","PMID:8834798"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized actomyosin contractile ring","termid":"FYPO:0001369"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02392":null},"genotype_count":1,"genotypes_by_uniquename":{"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000032","FYPO:0000138","FYPO:0004803","FYPO:0001320","FYPO:0000631","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"actomyosin contractile ring displaced from midpoint","references_by_uniquename":{"PMID:25866389":null},"single_locus_annotated_genes":["SJAG_02392"],"single_locus_genotype_uniquenames":["pom1delta"],"synonyms":[{"name":"actomyosin contractile ring displaced from cell center","type":"exact"},{"name":"actomyosin contractile ring displaced from cell centre","type":"exact"},{"name":"actomyosin contractile ring displaced from cell midpoint","type":"exact"},{"name":"actomyosin contractile ring displaced from midpoint during mitotic cell cycle","type":"related"},{"name":"actomyosin contractile ring displaced from midpoint during vegetative growth","type":"exact"},{"name":"cytokinetic contractile ring displaced from midpoint","type":"exact"}],"termid":"FYPO:0002026","terms_by_termid":{"FYECO:0000162":null,"FYPO:0002026":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: PR:O74349
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An E3 ubiquitin-protein ligase listerin that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12389:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 ubiquitin-protein ligase listerin (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21D10.09c","secondary_identifiers":["UniProtKB:O74349"],"synonyms":[{"name":"SPBC21D10.09c","type":"related"},{"name":"Spom972h-LTN1","type":"exact"}],"termid":"PR:O74349"}


id: PBO:0063460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"platelet derived growth factor subunit B","termid":"PBO:0063460"}


id: PBO:0065744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PYD and CARD domain containing","termid":"PBO:0065744"}


id: GO:0033040
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with soluble sour compounds to initiate a change in cell activity. These receptors are responsible for the sense of sour taste.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"taste receptor activity","termid":"GO:0008527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"sour taste receptor activity","termid":"GO:0033040"}


id: GO:0031302
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the endosome membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:mah","GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of endosome membrane (obsolete GO:0031302)","synonyms":[{"name":"intrinsic to endosome membrane","type":"narrow"}],"termid":"GO:0031302"}


id: MOD:01054
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-toluenesulfonyl","synonyms":[{"name":"4-toluenesulphonyl","type":"exact"},{"name":"Tos","type":"exact"},{"name":"Tosyl","type":"exact"}],"termid":"MOD:01054"}


id: PBO:0077261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane p24 trafficking protein 10 pseudogene 1","termid":"PBO:0077261"}


id: MONDO:0017889
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete mucinous tubular and spindle cell renal carcinoma (obsolete MONDO:0017889)","termid":"MONDO:0017889","xrefs":{"Monarch":{"xref_id":"0017889"}}}


id: MONDO:0004555
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An angiomyolipoma arising from the kidney.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney benign neoplasm","termid":"MONDO:0002513"},{"relation_name":"is_a","term_name":"angiomyolipoma","termid":"MONDO:0002603"},{"relation_name":"is_a","term_name":"benign PEComa","termid":"MONDO:0020581"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"kidney angiomyolipoma","secondary_identifiers":["SCTID:254921004","DOID:8411","ONCOTREE:RAML","UMLS:C0241961","MEDGEN:69146","NCIT:C3888"],"synonyms":[{"name":"RAML","type":"related"},{"name":"angiomyolipoma of kidney","type":"exact"},{"name":"angiomyolipoma of the kidney","type":"exact"},{"name":"kidney angiomyolipoma","type":"exact"},{"name":"renal angiomyolipoma","type":"exact"}],"termid":"MONDO:0004555","xrefs":{"Monarch":{"xref_id":"0004555"}}}


id: PBO:0062001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily G member 6","termid":"PBO:0062001"}


id: PBO:0066685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein, LIM domain interacting pseudogene 3","termid":"PBO:0066685"}


id: FYPO:0002151
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A viability phenotype in which a spore is unable to survive under conditions in which wild type spores survive. An inviable spore does not germinate.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable cell","termid":"FYPO:0000049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"inviable spore","secondary_identifiers":["FYPO:0000306"],"synonyms":[{"name":"abolished spore germination","type":"related"},{"name":"decreased spore viability","type":"related"},{"name":"lethal in spore","type":"exact"},{"name":"spore germination abolished","type":"related"}],"termid":"FYPO:0002151"}


id: GO:0070773
data:
  {"annotated_genes":["SJAG_00476","SJAG_00450"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[80283,80701],"is_not":false,"summary":null,"term":"GO:0070773"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: N-terminal L-glutaminyl-[protein] + H2O = N-terminal L-glutamyl-[protein] + NH3. This reaction is the deamidation of an N-terminal glutamine residue of a protein.","definition_xrefs":["RHEA:50680","PMID:19560421"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00450":null,"SJAG_00476":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016810","GO:0016787","GO:0140096","GO:0003674"],"is_obsolete":false,"name":"protein-N-terminal glutamine amidohydrolase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["EC:3.5.1.122"],"synonyms":[{"name":"NtQ-amidase activity","type":"exact"}],"termid":"GO:0070773","terms_by_termid":{"GO:0070773":null}}


id: GO:0080117
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Lateral growth of a plant axis (shoot axis or root) that is an increase in thickness resulting from formation of secondary vascular tissues by the vascular cambium.","definition_xrefs":["ISBN:0471245208","PMID:19074290","PO:0025004","PO:0005598"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lateral growth","termid":"GO:0080190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"secondary growth","synonyms":[{"name":"cambial secondary growth","type":"exact"}],"termid":"GO:0080117"}


id: GO:1990460
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a leptin receptor.","definition_xrefs":["GOC:pm","PMID:22405007"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"leptin receptor binding","termid":"GO:1990460"}


id: FYPO:0005332
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the repair of pyrimidine-pyrimidone 6-4 photoproducts by error-prone translesion synthesis does not occur.","definition_xrefs":["PomBase:mah","PMID:20453833"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal error-prone translesion synthesis","termid":"FYPO:0003892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000293","FYPO:0005447","FYPO:0000298"],"is_obsolete":false,"name":"abolished error-prone translesion synthesis of pyrimidine-pyrimidone 6-4 photoproducts","synonyms":[{"name":"abolished error-prone translesion synthesis across TT-(6-4)","type":"exact"},{"name":"abolished error-prone translesion synthesis of pyrimidine-pyrimidone 6-4 photoproducts during mitotic cell cycle","type":"related"},{"name":"abolished error-prone translesion synthesis of pyrimidine-pyrimidone 6-4 photoproducts during vegetative growth","type":"exact"},{"name":"error-prone translesion synthesis of pyrimidine-pyrimidone 6-4 photoproducts abolished","type":"exact"}],"termid":"FYPO:0005332"}


id: PBO:0027102
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_rDNA_antisense_small_RNA_level","termid":"PBO:0027102"}


id: GO:0000931
data:
  {"annotated_genes":["SJAG_02609","SJAG_03835","SJAG_02431","SJAG_01215","SJAG_01756","SJAG_02886","SJAG_00856","SJAG_07018"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[80808,99557,102005,102906,108400,111572,112554,119198],"is_not":false,"summary":null,"term":"GO:0000931"}]},"cv_name":"cellular_component","definition":"A complex of gamma tubulin and associated proteins thought to be formed by multimerization of gamma-tubulin small complexes. An example of this structure is found in Schizosaccharomyces pombe.","definition_xrefs":["PMID:12134075","GOC:mtg_sensu","PMID:17021256"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gamma-tubulin complex","termid":"GO:0000930"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00856":null,"SJAG_01215":null,"SJAG_01756":null,"SJAG_02431":null,"SJAG_02609":null,"SJAG_02886":null,"SJAG_03835":null,"SJAG_07018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0015630","GO:0005575"],"is_obsolete":false,"name":"gamma-tubulin ring complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0000925","GO:0055031","GO:0055032","GO:0000929","GO:0008274","GO:0061494","GO:0000926","GO:0000924","GO:0055033"],"synonyms":[{"name":"gamma-TuRC","type":"exact"},{"name":"gamma-tubulin large complex","type":"related"},{"name":"gamma-tubulin large complex, centrosomal","type":"narrow"},{"name":"gamma-tubulin large complex, eMTOC","type":"narrow"},{"name":"gamma-tubulin large complex, equatorial microtubule organizing center","type":"narrow"},{"name":"gamma-tubulin large complex, equatorial microtubule organizing centre","type":"narrow"},{"name":"gamma-tubulin large complex, iMTOC","type":"narrow"},{"name":"gamma-tubulin large complex, interphase microtubule organizing center","type":"narrow"},{"name":"gamma-tubulin large complex, interphase microtubule organizing centre","type":"narrow"},{"name":"gamma-tubulin large complex, mitotic spindle pole body","type":"narrow"},{"name":"gamma-tubulin large complex, spindle pole body","type":"narrow"},{"name":"gamma-tubulin ring complex, centrosomal","type":"narrow"}],"termid":"GO:0000931","terms_by_termid":{"GO:0000931":null}}


id: PBO:0083405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the dubious ORF YHR032C-A","termid":"PBO:0083405"}


id: PBO:0065545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostaglandin D2 receptor 2","termid":"PBO:0065545"}


id: MONDO:0017533
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"postaxial polydactyly type B","termid":"MONDO:0019674"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"postaxial polydactyly type B, unilateral","secondary_identifiers":["Orphanet:295167","icd11.foundation:154207037"],"termid":"MONDO:0017533","xrefs":{"Monarch":{"xref_id":"0017533"}}}


id: MONDO:0008414
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A schizophrenia that has material basis in an autosomal dominant mutation of SCZD1 on chromosome 5q23-q35.","definition_xrefs":["DOID:0070077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"schizophrenia","termid":"MONDO:0005090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0002039"],"is_obsolete":false,"name":"schizophrenia 1","secondary_identifiers":["MEDGEN:65084","OMIM:181510","UMLS:C0220702"],"synonyms":[{"name":"SCZD1","type":"exact"},{"name":"schizophrenia 1","type":"exact"},{"name":"schizophrenia 1 with or without an affective disorder","type":"related"},{"name":"schizophrenia susceptibility locus, chromosome 5-related","type":"related"}],"termid":"MONDO:0008414","xrefs":{"Monarch":{"xref_id":"0008414"}}}


id: PBO:0048139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FXYD domain containing ion transport regulator 3","termid":"PBO:0048139"}


id: GO:0099111
data:
  {"annotated_genes":["SJAG_02431","SJAG_02731","SJAG_03437","SJAG_02286","SJAG_02737","SJAG_05185","SJAG_04597","SJAG_03835","SJAG_01297","SJAG_01775","SJAG_02761","SJAG_00332","SJAG_00851","SJAG_04143","SJAG_02045","SJAG_01546","SJAG_05266","SJAG_03540","SJAG_01662","SJAG_00918","SJAG_01863","SJAG_00594","SJAG_01613","SJAG_02336","SJAG_05220","SJAG_04387","SJAG_05319","SJAG_01211","SJAG_03673","SJAG_01371","SJAG_02651","SJAG_00397","SJAG_04001","SJAG_00113","SJAG_00368","SJAG_03073","SJAG_02509","SJAG_00140","SJAG_01224","SJAG_04003","SJAG_01370","SJAG_02561"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93728,113388,115943,93264,105191,118954,104900,113037,99491,102652,89614,92867,97110],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030989"},{"annotations":[108546,103366,113211],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032118"},{"annotations":[118958,72538,109389,103377,111586,76788,115945],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098863"},{"annotations":[101149,99566],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090561"},{"annotations":[78100,99493,93266,101150,89618],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000743"},{"annotations":[96301],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1902854"},{"annotations":[105680],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099117"},{"annotations":[105836,120698,102309,110231],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140210"},{"annotations":[116095,102447,91618,98687,118925,110858,92855,100539,109465,91011,111868],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990976"},{"annotations":[93028],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010970"},{"annotations":[106822,106488],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047496"}]},"cv_name":"biological_process","definition":"A microtubule-based process that results in the transport of organelles, other microtubules, or other cellular components. Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules.","definition_xrefs":["ISBN:0815316194","GOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport","termid":"GO:0006810"}],"gene_count":42,"genes_by_uniquename":{"SJAG_00113":null,"SJAG_00140":null,"SJAG_00332":null,"SJAG_00368":null,"SJAG_00397":null,"SJAG_00594":null,"SJAG_00851":null,"SJAG_00918":null,"SJAG_01211":null,"SJAG_01224":null,"SJAG_01297":null,"SJAG_01370":null,"SJAG_01371":null,"SJAG_01546":null,"SJAG_01613":null,"SJAG_01662":null,"SJAG_01775":null,"SJAG_01863":null,"SJAG_02045":null,"SJAG_02286":null,"SJAG_02336":null,"SJAG_02431":null,"SJAG_02509":null,"SJAG_02561":null,"SJAG_02651":null,"SJAG_02731":null,"SJAG_02737":null,"SJAG_02761":null,"SJAG_03073":null,"SJAG_03437":null,"SJAG_03540":null,"SJAG_03673":null,"SJAG_03835":null,"SJAG_04001":null,"SJAG_04003":null,"SJAG_04143":null,"SJAG_04387":null,"SJAG_04597":null,"SJAG_05185":null,"SJAG_05220":null,"SJAG_05266":null,"SJAG_05319":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"microtubule-based transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0099111","terms_by_termid":{"GO:0000743":null,"GO:0010970":null,"GO:0030989":null,"GO:0032118":null,"GO:0047496":null,"GO:0090561":null,"GO:0098863":null,"GO:0099117":null,"GO:0140210":null,"GO:1902854":null,"GO:1990976":null}}


id: GO:0140268
data:
  {"annotated_genes":["SJAG_01329","SJAG_01168","SJAG_03247","SJAG_02613","SJAG_04413","SJAG_03170","SJAG_01564"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[78765,93360,99366,106308,113647,119540,120707],"is_not":false,"summary":null,"term":"GO:0140268"}]},"cv_name":"cellular_component","definition":"A contact site between the endoplasmic reticulum membrane and the plasma membrane, structured by bridging complexes.","definition_xrefs":["PMID:23041194","PMID:29782498","PMID:27955928","PMID:29290560","PMID:30012696"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle membrane contact site","termid":"GO:0044232"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01168":null,"SJAG_01329":null,"SJAG_01564":null,"SJAG_02613":null,"SJAG_03170":null,"SJAG_03247":null,"SJAG_04413":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"endoplasmic reticulum-plasma membrane contact site","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"EPCS","type":"exact"},{"name":"ER-PM contact site","type":"exact"},{"name":"ER-plasma membrane contact site","type":"exact"},{"name":"endoplasmic reticulum-plasma membrane contact junction","type":"exact"}],"termid":"GO:0140268","terms_by_termid":{"GO:0140268":null}}


id: GO:0014734
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The enlargement or overgrowth of all or part of an organ due to an increase in size (not length) of individual muscle fibers without cell division. In the case of skeletal muscle cells this happens due to the additional synthesis of sarcomeric proteins and assembly of myofibrils.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striated muscle hypertrophy","termid":"GO:0014897"},{"relation_name":"is_a","term_name":"skeletal muscle adaptation","termid":"GO:0043501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"skeletal muscle hypertrophy","termid":"GO:0014734"}


id: PBO:0051328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 2-19 (pseudogene)","termid":"PBO:0051328"}


id: PBO:0039525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD33B pseudogene 6","termid":"PBO:0039525"}


id: GO:0030039
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA unwinding factor (obsolete GO:0030039)","synonyms":[{"name":"DNA unwinding factor","type":"exact"}],"termid":"GO:0030039"}


id: GO:0060174
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process pertaining to the initial formation of a limb bud from unspecified parts. This process begins with the formation of a local condensation of mesenchyme cells within the prospective limb field, and ends when a limb bud is recognizable.","definition_xrefs":["GOC:dph","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"limb morphogenesis","termid":"GO:0035108"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"limb bud formation","synonyms":[{"name":"limb formation","type":"exact"},{"name":"limbbud formation","type":"exact"}],"termid":"GO:0060174"}


id: PBO:0091193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Pro","termid":"PBO:0091193"}


id: PBO:0064904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 3 catalytic subunit gamma","termid":"PBO:0064904"}


id: GO:0030998
data:
  {"annotated_genes":["SJAG_07002","SJAG_00172","SJAG_02652","SJAG_04303","SJAG_04748","SJAG_03438","SJAG_02490","SJAG_03843","SJAG_05333"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[90926,92205,93348,96645,106825,111527,111619,113110,117539],"is_not":false,"summary":null,"term":"GO:0030998"}]},"cv_name":"cellular_component","definition":"A proteinaceous scaffold associated with fission yeast chromosomes during meiotic prophase. Linear elements consist of a protein complex, LinE, with four main structural components (Rec10, Rec25, Rec27, and Mug20 in S. pombe) associated with chromatin. The resulting structure is related to but not equivalent to the synaptonemal complex.","definition_xrefs":["DOI:10.2323/jgam.28.263","PMID:12665553","GOC:jb","PMID:30640914"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synaptonemal structure","termid":"GO:0099086"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00172":null,"SJAG_02490":null,"SJAG_02652":null,"SJAG_03438":null,"SJAG_03843":null,"SJAG_04303":null,"SJAG_04748":null,"SJAG_05333":null,"SJAG_07002":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005694","GO:0005575"],"is_obsolete":false,"name":"linear element","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030998","terms_by_termid":{"GO:0030998":null}}


id: GO:0004120
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: nucleoside cyclic phosphate + H2O = nucleoside phosphate. This reaction is the hydrolysis of bonds in a cyclic nucleotide.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete photoreceptor cyclic-nucleotide phosphodiesterase activity (obsolete GO:0004120)","termid":"GO:0004120"}


id: GO:1990316
data:
  {"annotated_genes":["SJAG_04502","SJAG_05017","SJAG_01274","SJAG_02441","SJAG_04232"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72620,74038,74328,81502,119817],"is_not":false,"summary":null,"term":"GO:1990316"}]},"cv_name":"cellular_component","definition":"A protein complex consisting of Atg1 (or Atg1 homologs e.g. ULK1, ULK2 in mammals) and Atg13 along with other proteins that regulate its function (e.g. Atg17 in yeast or RB1CC1(FIP200) in mammals). This complex has serine/threonine protein kinase activity and is involved in autophagosome formation.","definition_xrefs":["PMID:19258318","PMID:22885598","GOC:rb","PMID:19211835","GOC:DOS","GOC:bhm","PMID:19597335","PMID:15743910"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine/threonine protein kinase complex","termid":"GO:1902554"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01274":null,"SJAG_02441":null,"SJAG_04232":null,"SJAG_04502":null,"SJAG_05017":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"Atg1/ULK1 kinase complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0070969","GO:0034273"],"synonyms":[{"name":"ATG1 kinase complex","type":"exact"},{"name":"ATG1-ATG13 complex","type":"exact"},{"name":"ATG1/ULK1 signaling complex","type":"exact"},{"name":"Atg1p signalling complex","type":"exact"},{"name":"ULK complex","type":"exact"},{"name":"ULK1 complex","type":"exact"},{"name":"ULK1 signaling complex","type":"exact"},{"name":"ULK1-ATG13-FIP200 complex","type":"exact"},{"name":"ULK1-ATG13-RB1CC1 complex","type":"exact"},{"name":"autophagy-initiation complex","type":"exact"}],"termid":"GO:1990316","terms_by_termid":{"GO:1990316":null}}


id: GO:0047550
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-hydroxyadipate + NAD+ = 2-oxoadipate + H+ + NADH.","definition_xrefs":["RHEA:14793","EC:1.1.1.172"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"2-oxoadipate reductase activity","secondary_identifiers":["KEGG_REACTION:R01932","MetaCyc:2-OXOADIPATE-REDUCTASE-RXN"],"synonyms":[{"name":"2-hydroxyadipate:NAD+ 2-oxidoreductase activity","type":"related"},{"name":"2-ketoadipate reductase activity","type":"related"},{"name":"alpha-ketoadipate reductase activity","type":"related"}],"termid":"GO:0047550"}


id: GO:0044720
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces the size of an imaginal disc-derived wing.","definition_xrefs":["PMID:21393605"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of imaginal disc-derived wing size","termid":"GO:0044719"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of imaginal disc-derived wing size","termid":"GO:0044720"}


id: MONDO:0008672
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Watson syndrome is believed to be a variant of neurofibromatosis type 1. The symptoms of this condition are pulmonary valvular stenosis, cafe-au-lait spots and short stature. IQTest scores for individuals with Watson syndromecan rangebetween 60-100.Many people with this condition also have a larger than average head size (macrocephaly) and Lisch nodules. While mutations in the NF1 gene have been found in families with Watson syndrome, the exactcause of this condition is unknown. The conditionis inherited in an autosomal dominant pattern. Treatment aims at managing the specific symptoms of an individual.","direct_ancestors":[{"relation_name":"is_a","term_name":"neurofibromatosis-Noonan syndrome","termid":"MONDO:0011035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"Watson syndrome","secondary_identifiers":["GARD:5540","icd11.foundation:1674178232","SCTID:403820003","DOID:0070483","ICD9:709.8","OMIM:193520","Orphanet:3444","UMLS:C0553586","MEDGEN:107817"],"synonyms":[{"name":"WTSN","type":"related"},{"name":"Watson syndrome","type":"exact"},{"name":"cafe-Au-lait Spots with pulmonic stenosis","type":"related"},{"name":"pulmonic stenosis with cafe-Au-lait Spots","type":"related"}],"termid":"MONDO:0008672","xrefs":{"Monarch":{"xref_id":"0008672"}}}


id: GO:0048061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a motile cell or organism towards the source of gravity.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gravitaxis","termid":"GO:0042332"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive gravitaxis","secondary_identifiers":["GO:0048064"],"synonyms":[{"name":"positive geotactic behavior","type":"exact"},{"name":"positive geotactic behaviour","type":"exact"},{"name":"positive gravitactic behavior","type":"exact"},{"name":"positive gravitactic behaviour","type":"exact"},{"name":"positive taxis in response to gravity","type":"exact"},{"name":"positive taxis in response to gravitytaxis in response to gravitational stimulus","type":"exact"}],"termid":"GO:0048061"}


id: GO:0010264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phytic acid, myo-inositol hexakisphosphate, a regulator of intracellular signaling, a highly abundant animal anti-nutrient and a phosphate and mineral storage compound in plant seeds.","definition_xrefs":["PMID:16107538"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol phosphate biosynthetic process","termid":"GO:0032958"},{"relation_name":"is_a","term_name":"myo-inositol hexakisphosphate metabolic process","termid":"GO:0033517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"myo-inositol hexakisphosphate biosynthetic process","synonyms":[{"name":"myo-inositol hexakisphosphate anabolism","type":"exact"},{"name":"myo-inositol hexakisphosphate biosynthesis","type":"exact"},{"name":"myo-inositol hexakisphosphate formation","type":"exact"},{"name":"myo-inositol hexakisphosphate synthesis","type":"exact"},{"name":"phytate biosynthesis","type":"exact"},{"name":"phytate biosynthetic process","type":"exact"}],"termid":"GO:0010264"}


id: GO:0036373
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-L-fucose = beta-L-fucose.","definition_xrefs":["PMID:15060078","RHEA:25580","GOC:crds"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"L-fucose mutarotase activity","secondary_identifiers":["MetaCyc:RXN0-5298","EC:5.1.3.29"],"synonyms":[{"name":"alpha-L-fucose 1-epimerase activity","type":"related"},{"name":"fucose 1-epimerase activity","type":"related"},{"name":"type-2 mutarotase activity","type":"related"}],"termid":"GO:0036373"}


id: GO:0032687
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of interferon-alpha production.","definition_xrefs":["PMID:15546383","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of type I interferon production","termid":"GO:0032480"},{"relation_name":"is_a","term_name":"regulation of interferon-alpha production","termid":"GO:0032647"},{"relation_name":"negatively_regulates","term_name":"interferon-alpha production","termid":"GO:0032607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of interferon-alpha production","secondary_identifiers":["GO:1902740","GO:0045355"],"synonyms":[{"name":"down regulation of interferon-alpha production","type":"exact"},{"name":"down-regulation of interferon-alpha production","type":"exact"},{"name":"downregulation of interferon-alpha production","type":"exact"},{"name":"inhibition of interferon-alpha production","type":"narrow"},{"name":"negative regulation of interferon-alpha biosynthetic process","type":"narrow"},{"name":"negative regulation of interferon-alpha secretion","type":"narrow"}],"termid":"GO:0032687"}


id: GO:0120335
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Radial spoke 3 (RS3), when present, is the most distal of each group of radial spokes, whether grouped as triplets or doublets. RS3 has significantly different morphology and protein composition than RS1 and RS2 and also extends at a slant from the microtubule doublet, rather than perpendicularly like RS1 and RS2. In some organisms (e.g. Chlamydomonas and Sarcophaga bullata), RS3 is represented only as a stump attached to the A-microtubule lacking the rest of the stalk structure and entirely lacking the head structure.","definition_xrefs":["ISBN:0124325653","PMID:22754630","PMID:25694453","PMID:9450971","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"radial spoke","termid":"GO:0001534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"radial spoke 3","synonyms":[{"name":"RS3","type":"related"}],"termid":"GO:0120335"}


id: PBO:0065794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"R3HDM2 divergent transcript","termid":"PBO:0065794"}


id: GO:0046562
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-D-glucose + O2 = D-glucono-1,5-lactone + H2O2.","definition_xrefs":["RHEA:11428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose oxidase activity","termid":"GO:0047979"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"beta-D-glucose oxidase activity","secondary_identifiers":["EC:1.1.3.4","KEGG_REACTION:R01522","MetaCyc:GLUCOSE-OXIDASE-RXN"],"synonyms":[{"name":"D-glucose oxidase activity","type":"related"},{"name":"D-glucose-1-oxidase activity","type":"related"},{"name":"GOD activity","type":"related"},{"name":"beta-D-glucose:oxygen 1-oxido-reductase activity","type":"related"},{"name":"beta-D-glucose:oxygen 1-oxidoreductase activity","type":"related"},{"name":"beta-D-glucose:quinone oxidoreductase activity","type":"related"},{"name":"corylophyline","type":"related"},{"name":"deoxin-1","type":"related"},{"name":"glucose aerodehydrogenase activity","type":"related"},{"name":"glucose oxidase activity","type":"exact"},{"name":"glucose oxyhydrase activity","type":"related"},{"name":"microcid","type":"related"},{"name":"penatin","type":"related"}],"termid":"GO:0046562"}


id: PBO:0028960
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-galactose_absent_from_glycoprotein_glycan","termid":"PBO:0028960"}


id: GO:0048777
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of leucophore differentiation.","definition_xrefs":["GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leucophore differentiation","termid":"GO:0048775"},{"relation_name":"is_a","term_name":"positive regulation of pigment cell differentiation","termid":"GO:0050942"},{"relation_name":"positively_regulates","term_name":"leucophore differentiation","termid":"GO:0048772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of leucophore differentiation","synonyms":[{"name":"activation of leucophore differentiation","type":"narrow"},{"name":"stimulation of leucophore differentiation","type":"narrow"},{"name":"up regulation of leucophore differentiation","type":"exact"},{"name":"up-regulation of leucophore differentiation","type":"exact"},{"name":"upregulation of leucophore differentiation","type":"exact"}],"termid":"GO:0048777"}


id: MONDO:0010524
data:
  {"annotated_genes":["SJAG_02457"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87572],"is_not":false,"summary":null,"term":"MONDO:0010524"}]},"cv_name":"mondo","definition":"A rare syndromic, inherited form of sideroblastic anemia in which the cause of the disease is a mutation in the ABCB7 gene and is characterized by mild to moderate anemia (with hypochromia and microcytosis) and early-onset, non- or slowly progressive spinocerebellar ataxia.","definition_xrefs":["Orphanet:2802"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"X-linked sideroblastic anemia 1","termid":"MONDO:0020721"},{"relation_name":"is_a","term_name":"X-linked cerebellar ataxia","termid":"MONDO:0016612"},{"relation_name":"is_a","term_name":"inherited sideroblastic anemia","termid":"MONDO:0020099"},{"relation_name":"is_a","term_name":"mitochondrial disease","termid":"MONDO:0044970"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0002280","MONDO:0005559"],"is_obsolete":false,"name":"X-linked sideroblastic anemia with ataxia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:301310","MEDGEN:335078","DOID:0050554","DOID:0060064","MESH:C536358","SCTID:719816006","UMLS:C1845028","GARD:668"],"synonyms":[{"name":"ASAT","type":"exact"},{"name":"Pagon Bird Detter syndrome","type":"related"},{"name":"Pagon-Bird-Detter syndrome","type":"exact"},{"name":"X-linked sideroblastic Anaemia and ataxia","type":"related"},{"name":"X-linked sideroblastic Anemia and ataxia","type":"related"},{"name":"X-linked sideroblastic anaemia and ataxia","type":"exact"},{"name":"X-linked sideroblastic anaemia and spinocerebellar ataxia","type":"related"},{"name":"X-linked sideroblastic anaemia with spinocerebellar ataxia","type":"exact"},{"name":"X-linked sideroblastic anemia and ataxia","type":"exact"},{"name":"X-linked sideroblastic anemia and spinocerebellar ataxia","type":"related"},{"name":"X-linked sideroblastic anemia with ataxia","type":"exact"},{"name":"X-linked sideroblastic anemia with spinocerebellar ataxia","type":"exact"},{"name":"XLSA-A","type":"exact"},{"name":"Xlsa-A","type":"related"},{"name":"anaemia sideroblastic and spinocerebellar ataxia","type":"exact"},{"name":"anemia sideroblastic and spinocerebellar ataxia","type":"exact"},{"name":"anemia, Sex-linked hypochromic Siderobla","type":"related"},{"name":"anemia, sideroblastic, and spinocerebellar ataxia","type":"related"},{"name":"anemia, sideroblastic, with ataxia, X-linked recessive","type":"exact"},{"name":"sideroblastic anaemia with spinocerebellar ataxia","type":"exact"},{"name":"sideroblastic anemia with spinocerebellar ataxia","type":"exact"}],"termid":"MONDO:0010524","terms_by_termid":{"MONDO:0010524":null},"xrefs":{"Monarch":{"xref_id":"0010524"}}}


id: PBO:0060331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin IIIA","termid":"PBO:0060331"}


id: PBO:0088151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuole-specific Myo2p receptor; Myo2p-Vac17p-Vac8p transport complex subunit required for vacuolar inheritance; mediates anchoring of phosphatidylinositol 3-kinase complex I (PIK3C3-C1) to autophagosome; required with Atg13p for the vesicle closure step of the cytoplasm-to-vacuole (CVT) pathway, for homotypic vacuole-vacuole fusion and for nucleus-vacuole junction formation with Nvj1p; contains 11 armadillo (ARM) repeats; myristoylated, palmitoylated, and phosphorylated","termid":"PBO:0088151"}


id: MONDO:1012481
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cervical vertebral compressive myelopathy, non-human animal","termid":"MONDO:1011891"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervical vertebral compressive myelopathy, horse","secondary_identifiers":["OMIA:001894-9796"],"termid":"MONDO:1012481","xrefs":{"Monarch":{"xref_id":"1012481"}}}


id: GO:1900825
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of membrane depolarization during a cardiac muscle cell action potential.","definition_xrefs":["GOC:TermGenie","GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane depolarization during action potential","termid":"GO:0098902"},{"relation_name":"regulates","term_name":"membrane depolarization during cardiac muscle cell action potential","termid":"GO:0086012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of membrane depolarization during cardiac muscle cell action potential","termid":"GO:1900825"}


id: PBO:0047337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibulin 5","termid":"PBO:0047337"}


id: PBO:0110302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial and nuclear tRNA (guanine-N2-)-methyltransferase Trm1.2","termid":"PBO:0110302"}


id: PBO:0017937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ran1/Pat1","termid":"PBO:0017937"}


id: PBO:0051311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1/OR2-3 (pseudogene)","termid":"PBO:0051311"}


id: FYPO:0005023
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a cell is inviable, contains one nucleus and one or more septa and is elongated. Cells with this phenotype are inviable, and the nucleus is not in the normal location.","definition_xrefs":["PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"has_part","term_name":"inviable elongated vegetative cell","termid":"FYPO:0001490"},{"relation_name":"is_a","term_name":"inviable septated mononucleate vegetative cell","termid":"FYPO:0002000"},{"relation_name":"is_a","term_name":"inviable elongated mononucleate vegetative cell with mislocalized nucleus","termid":"FYPO:0002337"},{"relation_name":"is_a","term_name":"inviable septated vegetative cell with abnormal cell morphology","termid":"FYPO:0002452"},{"relation_name":"is_a","term_name":"elongated septated vegetative cell","termid":"FYPO:0004750"},{"relation_name":"output_of","term_name":"cut","termid":"FYPO:0000229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000337","FYPO:0000032","FYPO:0000631","FYPO:0000004","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000005","FYPO:0000138","FYPO:0000641","FYPO:0005447"],"is_obsolete":false,"name":"inviable elongated septated mononucleate vegetative cell","synonyms":[{"name":"elongated cell with cytokinesis in the absence of nuclear division","type":"related"},{"name":"elongated cell with cytokinesis without nuclear division","type":"related"},{"name":"elongated cell with septation in the absence of nuclear division","type":"related"},{"name":"elongated cell with septation independent of mitosis","type":"related"},{"name":"elongated cell with septation without nuclear division","type":"related"},{"name":"inviable elongated cell with premature septation","type":"related"},{"name":"inviable elongated septated mononucleate cell","type":"exact"},{"name":"inviable elongated septated mononucleate cell during vegetative growth","type":"exact"},{"name":"inviable elongated septated mononucleate vegetative cell during mitotic cell cycle","type":"related"},{"name":"inviable elongated septated mononucleate vegetative cell with mislocalized nucleus","type":"exact"},{"name":"inviable septated mononucleate elongated vegetative cell","type":"exact"},{"name":"lethal; elongated septated mononucleate vegetative cell","type":"exact"}],"termid":"FYPO:0005023"}


id: MOD:01308
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["Unimod:332#T"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiophosphate labeled with biotin-HPDP","termid":"MOD:00639"},{"relation_name":"is_a","term_name":"modified L-threonine residue","termid":"MOD:00917"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiophosphate labeled with biotin-HPDP -site T","synonyms":[{"name":"Thiophos-S-S-biotin","type":"related"},{"name":"thiophosphate labeled with biotin-HPDP","type":"related"}],"termid":"MOD:01308"}


id: GO:0002685
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of leukocyte migration.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immune system process","termid":"GO:0002682"},{"relation_name":"is_a","term_name":"regulation of cell migration","termid":"GO:0030334"},{"relation_name":"regulates","term_name":"leukocyte migration","termid":"GO:0050900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of leukocyte migration","synonyms":[{"name":"regulation of immune cell migration","type":"exact"},{"name":"regulation of leucocyte migration","type":"exact"}],"termid":"GO:0002685"}


id: PBO:0028147
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_nucleolus","termid":"PBO:0028147"}


id: MOD:01525
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The protein modification reporter fragment produced by an Applied Biosystems iTRAQ4plex 117 reagent derivatized residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"iTRAQ4plex-117, mTRAQ heavy, reporter+balance reagent acylated residue","termid":"MOD:01506"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter fragment","termid":"MOD:01521"},{"relation_name":"is_a","term_name":"mTRAQ reporter fragment","termid":"MOD:01870"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ4plex-117, mTRAQ heavy, reporter fragment","synonyms":[{"name":"4-methyl-1-methylidenepiperazin-1-ium","type":"exact"}],"termid":"MOD:01525"}


id: PBO:0116851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatin remodelling factor Iws1","termid":"PBO:0116851"}


id: MONDO:1010819
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polydactyly that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polydactyly, non-human animal","termid":"MONDO:1010158"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polydactyly, cattle","secondary_identifiers":["OMIA:000810-9913"],"termid":"MONDO:1010819","xrefs":{"Monarch":{"xref_id":"1010819"}}}


id: GO:0010594
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of the orderly movement of an endothelial cell into the extracellular matrix to form an endothelium.","definition_xrefs":["GOC:tb","GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell migration","termid":"GO:0030334"},{"relation_name":"regulates","term_name":"endothelial cell migration","termid":"GO:0043542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of endothelial cell migration","termid":"GO:0010594"}


id: MONDO:0017528
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"polydactyly of an index finger","termid":"MONDO:0008271"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polydactyly of an index finger, bilateral","secondary_identifiers":["UMLS:C5438861","icd11.foundation:806174152","Orphanet:295154","MEDGEN:1727346"],"synonyms":[{"name":"preaxial polydactyly type 3, bilateral","type":"exact"}],"termid":"MONDO:0017528","xrefs":{"Monarch":{"xref_id":"0017528"}}}


id: PBO:0090559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall alpha-1,3-glucan synthase Mok13","termid":"PBO:0090559"}


id: MONDO:0017796
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete ameloblastic carcinoma (obsolete MONDO:0017796)","termid":"MONDO:0017796","xrefs":{"Monarch":{"xref_id":"0017796"}}}


id: PBO:0109352
data:
  {"annotation_feature_type":"gene","cv_name":"subunit_composition","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homomeric(16)","termid":"PBO:0109352"}


id: PBO:0011974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiamine diphosphokinase Tnr3/ Nudix hydrolase fusion protein","termid":"PBO:0011974"}


id: MOD:01275
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that is produced by formation of an adduct with 4-(2-aminoethyl)benzenesulfonyl fluoride, AEBS, and an L-lysine residue.","definition_xrefs":["PubMed:8597590","Unimod:276#K"],"direct_ancestors":[{"relation_name":"is_a","term_name":"4-(2-aminoethyl)benzenesulfonyl fluoride derivatized residue","termid":"MOD:00596"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6-[4-(2-aminoethyl)benzenesulfonyl]lysine","synonyms":[{"name":"AEBS","type":"related"},{"name":"Aminoethylbenzenesulfonylation","type":"related"}],"termid":"MOD:01275"}


id: GO:0015972
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving guanine pentaphosphate (5'-pppGpp-3'), a derivative of guanine riboside with five phosphates.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide metabolic process","termid":"GO:0009150"},{"relation_name":"is_a","term_name":"purine ribonucleoside bisphosphate metabolic process","termid":"GO:0034035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"guanosine pentaphosphate metabolic process","synonyms":[{"name":"guanosine pentaphosphate (5'-pppGpp-3') metabolic process","type":"exact"},{"name":"guanosine pentaphosphate (5'-pppGpp-3') metabolism","type":"exact"},{"name":"guanosine pentaphosphate metabolism","type":"exact"}],"termid":"GO:0015972"}


id: MONDO:0001544
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mononeuritis of lower limb","termid":"MONDO:0004797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"tibial nerve palsy","secondary_identifiers":["MEDGEN:509643","SCTID:365258000","DOID:12529","ICD9:355.8","UMLS:C0154751"],"termid":"MONDO:0001544","xrefs":{"Monarch":{"xref_id":"0001544"}}}


id: PBO:0005310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-B (predicted)","termid":"PBO:0005310"}


id: PBO:0004694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi membrane exchange factor subunit Sat1 (predicted)","termid":"PBO:0004694"}


id: GO:1903666
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of asexual reproduction.","definition_xrefs":["PMID:24390142","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of asexual reproduction","termid":"GO:1903664"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"asexual reproduction","termid":"GO:0019954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of asexual reproduction","synonyms":[{"name":"activation of asexual reproduction","type":"narrow"},{"name":"up regulation of asexual reproduction","type":"exact"},{"name":"up-regulation of asexual reproduction","type":"exact"},{"name":"upregulation of asexual reproduction","type":"exact"}],"termid":"GO:1903666"}


id: MONDO:0012641
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"restless legs syndrome, susceptibility to","termid":"MONDO:0100170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"restless legs syndrome, susceptibility to, 5","secondary_identifiers":["MEDGEN:370807","UMLS:C1970010","OMIM:611242"],"synonyms":[{"name":"RLS 5","type":"related"},{"name":"RLS5","type":"exact"},{"name":"restless legs syndrome 5","type":"exact"},{"name":"restless legs syndrome, susceptibility to, 5","type":"exact"}],"termid":"MONDO:0012641","xrefs":{"Monarch":{"xref_id":"0012641"}}}


id: PBO:0090267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate kinase Pgk1","termid":"PBO:0090267"}


id: PATO:0002209
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's having the shape of an incisor tooth.","definition_xrefs":["thefreedictionary:http://www.thefreedictionary.com/incisiform"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sharp","termid":"PATO:0001419"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"incisiform","termid":"PATO:0002209"}


id: PBO:0059594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 6","termid":"PBO:0059594"}


id: PBO:0066206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 20","termid":"PBO:0066206"}


id: PBO:0018209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxal family transmembrane transporter (predicted)","termid":"PBO:0018209"}


id: PBO:0074809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 14A","termid":"PBO:0074809"}


id: MONDO:0014450
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any isolated congenital breast hypoplasia/aplasia in which the cause of the disease is a mutation in the PTPRF gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isolated congenital breast hypoplasia/aplasia","termid":"MONDO:0015855"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breasts and/or nipples, aplasia or hypoplasia of, 2","secondary_identifiers":["OMIM:616001","GARD:16044","MEDGEN:863355","UMLS:C4014918"],"synonyms":[{"name":"BNAH2","type":"related"},{"name":"PTPRF isolated congenital breast hypoplasia/aplasia","type":"exact"},{"name":"breasts and/or nipples, aplasia or hypoplasia of, 2","type":"exact"},{"name":"breasts and/or nipples, aplasia or hypoplasia of, type 2","type":"exact"},{"name":"isolated congenital breast hypoplasia/aplasia caused by mutation in PTPRF","type":"exact"}],"termid":"MONDO:0014450","xrefs":{"Monarch":{"xref_id":"0014450"}}}


id: PBO:0065970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD51 paralog D","termid":"PBO:0065970"}


id: PBO:0044680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA damage inducible transcript 3","termid":"PBO:0044680"}


id: MONDO:0008034
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Becker muscular dystrophy","termid":"MONDO:0010311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"muscular dystrophy, pseudohypertrophic, with Internalized capillaries","secondary_identifiers":["MESH:C563554","OMIM:159050","MEDGEN:320399","UMLS:C1834652","GARD:15089"],"synonyms":[{"name":"muscular dystrophy, pseudohypertrophic, with Internalized capillaries","type":"exact"}],"termid":"MONDO:0008034","xrefs":{"Monarch":{"xref_id":"0008034"}}}


id: GO:0006039
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of cell wall chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues, found in the walls of cells.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete cell wall chitin catabolic process (obsolete GO:0006039)","synonyms":[{"name":"cell wall chitin breakdown","type":"exact"},{"name":"cell wall chitin catabolism","type":"exact"},{"name":"cell wall chitin degradation","type":"exact"}],"termid":"GO:0006039"}


id: GO:0140947
data:
  {"annotated_genes":["SJAG_04574"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[112474],"is_not":false,"summary":null,"term":"GO:0140947"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: N6,N6-dimethyl-L-lysyl9-[histone H3] + S-adenosyl-L-methionine = H+ + N6,N6,N6-trimethyl-L-lysyl9-[histone H3] + S-adenosyl-L-homocysteine. This reaction is the addition of a single methyl group to the dimethylated lysine residue at position 9 of histone H3, producing histone H3K9me3.","definition_xrefs":["RHEA:60280"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3K9 methyltransferase activity","termid":"GO:0046974"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04574":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016741","GO:0008276","GO:0003674","GO:0016740","GO:0140096"],"is_obsolete":false,"name":"histone H3K9me2 methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:2.1.1.366"],"synonyms":[{"name":"histone H3-K9 trimethylation","type":"broad"},{"name":"histone H3K9 trimethylation","type":"broad"},{"name":"histone H3K9me2 methylase activity","type":"exact"},{"name":"histone dimethyl-lysine(H3K9) N-methyltransferase activity (H3-K9 specific)","type":"exact"}],"termid":"GO:0140947","terms_by_termid":{"GO:0140947":null}}


id: PBO:0009256
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human ARPC3","termid":"PBO:0009256"}


id: GO:1900031
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any regulation of transcription from RNA polymerase II promoter that is involved in calcium-mediated signaling.","definition_xrefs":["GOC:TermGenie","PMID:9407035","PMID:9407036"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription from RNA polymerase II promoter involved in calcium-mediated signaling (obsolete GO:1900031)","synonyms":[{"name":"global transcription regulation from Pol II promoter of calcium ion signaling","type":"related"},{"name":"global transcription regulation from Pol II promoter of calcium signaling","type":"related"},{"name":"global transcription regulation from Pol II promoter of calcium signalling","type":"related"},{"name":"global transcription regulation from Pol II promoter of calcium-mediated signaling","type":"related"},{"name":"global transcription regulation from Pol II promoter of calcium-mediated signalling","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter of calcium ion signaling","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter of calcium signaling","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter of calcium signalling","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"related"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"related"},{"name":"regulation of global transcription from Pol II promoter of calcium ion signaling","type":"related"},{"name":"regulation of global transcription from Pol II promoter of calcium signaling","type":"related"},{"name":"regulation of global transcription from Pol II promoter of calcium signalling","type":"related"},{"name":"regulation of global transcription from Pol II promoter of calcium-mediated signaling","type":"related"},{"name":"regulation of global transcription from Pol II promoter of calcium-mediated signalling","type":"related"},{"name":"regulation of transcription from Pol II promoter of calcium ion signaling","type":"exact"},{"name":"regulation of transcription from Pol II promoter of calcium signaling","type":"exact"},{"name":"regulation of transcription from Pol II promoter of calcium signalling","type":"exact"},{"name":"regulation of transcription from Pol II promoter of calcium-mediated signaling","type":"related"},{"name":"regulation of transcription from Pol II promoter of calcium-mediated signalling","type":"exact"},{"name":"regulation of transcription from RNA polymerase II promoter involved in calcium-mediated signaling","type":"exact"},{"name":"regulation of transcription from RNA polymerase II promoter of calcium ion signaling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter of calcium signaling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter of calcium signalling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter of calcium-mediated signaling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter of calcium-mediated signalling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global of calcium ion signaling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global of calcium signaling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global of calcium signalling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global of calcium-mediated signaling","type":"related"},{"name":"regulation of transcription from RNA polymerase II promoter, global of calcium-mediated signalling","type":"related"}],"termid":"GO:1900031"}


id: GO:0019211
data:
  {"annotated_genes":["SJAG_04968","SJAG_01142","SJAG_00369","SJAG_03681","SJAG_00095","SJAG_04638","SJAG_00526","SJAG_03353","SJAG_03793","SJAG_00078","SJAG_01270"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[120607],"is_not":false,"summary":null,"term":"GO:0019211"},{"annotations":[74390,76491,78280,80668,119964,99614,116983,94811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072542"},{"annotations":[73471,77603],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008160"}]},"cv_name":"molecular_function","definition":"Binds to and increases the activity of a phosphatase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"},{"relation_name":"is_a","term_name":"phosphatase regulator activity","termid":"GO:0019208"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00078":null,"SJAG_00095":null,"SJAG_00369":null,"SJAG_00526":null,"SJAG_01142":null,"SJAG_01270":null,"SJAG_03353":null,"SJAG_03681":null,"SJAG_03793":null,"SJAG_04638":null,"SJAG_04968":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0098772","GO:0003674","GO:0030234","GO:0140677"],"is_obsolete":false,"name":"phosphatase activator activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0019211","terms_by_termid":{"GO:0008160":null,"GO:0019211":null,"GO:0072542":null}}


id: MONDO:1010682
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"AA amyloidosis that occurs in zebra finch.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"},{"relation_name":"is_a","term_name":"AA amyloidosis, non-human animal","termid":"MONDO:1010092"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AA amyloidosis, zebra finch","secondary_identifiers":["OMIA:000038-59729"],"termid":"MONDO:1010682","xrefs":{"Monarch":{"xref_id":"1010682"}}}


id: PBO:0031315
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_valproic_acid","termid":"PBO:0031315"}


id: GO:1901618
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of organic hydroxy compound from one side of a membrane to the other.","definition_xrefs":["GOC:TermGenie","GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete organic hydroxy compound transmembrane transporter activity (obsolete GO:1901618)","termid":"GO:1901618"}


id: PR:Q09898
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sid2 gene.","definition_xrefs":["UniProtKB:Q09898","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase sid2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC24B11.11c","synonyms":[{"name":"Spom972h-sid2","type":"exact"}],"termid":"PR:Q09898"}


id: PBO:0059749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 23","termid":"PBO:0059749"}


id: GO:1905692
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of an endoplasmic reticulum into its constituent components.","definition_xrefs":["GOC:autophagy","GO_REF:0000079","GOC:TermGenie","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum organization","termid":"GO:0007029"},{"relation_name":"is_a","term_name":"organelle disassembly","termid":"GO:1903008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum disassembly","synonyms":[{"name":"ER disassembly","type":"exact"}],"termid":"GO:1905692"}


id: GO:0051476
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A phosphoenolpyruvate-dependent sugar phosphotransferase transport specific for mammosylglycerate.","definition_xrefs":["PMID:368051"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoenolpyruvate-dependent sugar phosphotransferase system","termid":"GO:0009401"},{"relation_name":"is_a","term_name":"glycoside transport","termid":"GO:1901656"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"phosphoenolpyruvate-dependent mannosylglycerate phosphotransferase system","synonyms":[{"name":"mannosylglycerate transport","type":"broad"}],"termid":"GO:0051476"}


id: PBO:0073707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SKI/DACH domain containing 1","termid":"PBO:0073707"}


id: PBO:0034031
data:
  {"annotation_feature_type":"gene","cv_name":"pubprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canto_session_submitted_date","termid":"PBO:0034031"}


id: PBO:0036345
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"URAcil requiring","termid":"PBO:0036345"}


id: PBO:0056511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"muscleblind like splicing regulator 1","termid":"PBO:0056511"}


id: MONDO:0020856
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"bone marrow failure syndrome","termid":"MONDO:0000159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"bone marrow failure syndrome 4","secondary_identifiers":["MEDGEN:1648485","OMIM:618116","UMLS:C4748257"],"synonyms":[{"name":"BMFS4","type":"exact"},{"name":"BONE MARROW FAILURE SYNDROME 4","type":"exact"}],"termid":"MONDO:0020856","xrefs":{"Monarch":{"xref_id":"0020856"}}}


id: PBO:0029738
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_DNA_topoisomerase_II_activity","termid":"PBO:0029738"}


id: PBO:0076504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 4","termid":"PBO:0076504"}


id: FYPO:0001127
data:
  {"alleles_by_uniquename":{"SJAG_00028:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00028","name":"rga6delta","uniquename":"SJAG_00028:allele-1"},"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_02013:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02013","name":"pyp1delta","uniquename":"SJAG_02013:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_03048:allele-1":{"allele_type":"amino_acid_mutation","description":"G146D","gene_uniquename":"SJAG_03048","name":"cdc2-1w","uniquename":"SJAG_03048:allele-1"},"SJAG_03581:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03581","name":"gef1delta","uniquename":"SJAG_03581:allele-1"},"SJAG_04280:allele-1":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-1"},"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"G788E","gene_uniquename":"SJAG_04280","name":"wee1-G788E","uniquename":"SJAG_04280:allele-2"},"SJAG_04312:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04312","name":"pka1delta","uniquename":"SJAG_04312:allele-1"},"SJAG_04332:allele-1":{"allele_type":"amino_acid_mutation","description":"I30T,T572P","gene_uniquename":"SJAG_04332","name":"cdc25-D9","uniquename":"SJAG_04332:allele-1"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121596,121602,121614],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0001122"},{"annotations":[121427],"is_not":false,"rel_names":["has_part","is_a"],"summary":null,"term":"FYPO:0007701"},{"annotations":[121523,121623,121524,121527],"is_not":false,"rel_names":["has_part","is_a"],"summary":null,"term":"FYPO:0000648"},{"annotations":[121525,121532,121526],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0001877"},{"annotations":[121530,121531],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0006616"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell has a volume or dimensions that differ from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell morphology","termid":"FYPO:0000005"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00028":null,"SJAG_00266":null,"SJAG_02013":null,"SJAG_02592":null,"SJAG_03048":null,"SJAG_03581":null,"SJAG_04280":null,"SJAG_04312":null,"SJAG_04332":null,"SJAG_04522":null},"genotype_count":11,"genotypes_by_uniquename":{"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc2-1w(G146D aa)","display_uniquename":"cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03048:allele-1","expression":"Not assayed or wild 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assayed or wild type"}]}]},"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0000002"],"is_obsolete":false,"name":"abnormal cell size","references_by_uniquename":{"PMID:25866389":null,"PMID:27678009":null,"PMID:30664646":null,"PMID:31150379":null},"single_locus_annotated_genes":["SJAG_03048","SJAG_04312","SJAG_04280","SJAG_02592","SJAG_02013","SJAG_03581","SJAG_00266","SJAG_04332","SJAG_04522","SJAG_00028"],"single_locus_genotype_uniquenames":["atf1delta","rga4delta","wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","rga6delta","pyp1delta","pka1delta","sty1delta","cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","gef1delta","cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal cell length","type":"narrow"}],"termid":"FYPO:0001127","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000102":null,"FYECO:0000137":null,"FYECO:0000338":null,"FYPO:0000648":null,"FYPO:0001122":null,"FYPO:0001877":null,"FYPO:0006616":null,"FYPO:0007701":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"FYPO_EXT:0000003":null}}


id: PR:O59701
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cys11 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59701"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine synthase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC36.04","synonyms":[{"name":"CSase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"O-acetylserine (thiol)-lyase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"O-acetylserine sulfhydrylase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"OAS-TL 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cys11","type":"exact"}],"termid":"PR:O59701"}


id: PR:Q9UTE4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sno1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTE4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized glutaminase C222.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC222.08c","synonyms":[{"name":"Spom972h-sno1","type":"exact"}],"termid":"PR:Q9UTE4"}


id: PBO:0069650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 927, pseudogene","termid":"PBO:0069650"}


id: PATO:0000779
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000779 absolute locomotor activity value (obsolete PATO:0000779)","termid":"PATO:0000779"}


id: MONDO:0016480
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Silver-Russell syndrome","termid":"MONDO:0008394"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"silver-Russell syndrome due to an imprinting defect of 11p15","secondary_identifiers":["GARD:20604","MEDGEN:1826102","UMLS:C5680916","Orphanet:231140"],"synonyms":[{"name":"Silver-Russell syndrome due to an imprinting defect of type 11p15","type":"exact"}],"termid":"MONDO:0016480","xrefs":{"Monarch":{"xref_id":"0016480"}}}


id: PBO:0068555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 6, pseudogene","termid":"PBO:0068555"}


id: GO:0120310
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphological, biochemical and genetic changes that induce the differentiation of metacyclic parasites into amastigotes in some of the Trypanosomatidae species such as Leishmania parasites and Trypanosoma cruzi. This process occurs inside the cells of the mammalian hosts, particularly in macrophages and other phagocytic cells for Leishmania parasites.","definition_xrefs":["GOC:ach","PMID:13129524","PMID:12377273","DOI:10.5772/intechopen.84639","GOC:krc","PMID:26752404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"development of symbiont in host","termid":"GO:0044114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amastigogenesis","termid":"GO:0120310"}


id: PBO:0083930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fungal-specific protein of unknown function; induced in respiratory-deficient cells; YAR068W has a paralog, YHR214W-A, that arose from a segmental duplication","termid":"PBO:0083930"}


id: PBO:0006181
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-independent_of","termid":"PBO:0006181"}


id: PBO:0116274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytosolic gamma-glutamyl kinase; catalyzes the first step in proline biosynthesis; required for nitrogen starvation-induced ribophagy but not for nonselective autophagy; PRO1 has a paralog, YHR033W, that arose from the whole genome duplication","termid":"PBO:0116274"}


id: MONDO:0000820
data:
  {"annotated_genes":["SJAG_01718"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86889],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0975952"}]},"cv_name":"mondo","definition":"A disorder characterized by malformations in the structure of the capillaries in the brain. It is caused by mutations in the CCM2, KRIT1 and PDCD10 genes. The capillaries fill with blood and stretch, thereby creating cavernous spaces. Some patients experience headaches, seizures, or visual and hearing disturbances. Cerebral hemorrhage may also occur.","definition_xrefs":["NCIT:C84626"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"central nervous system hemangioma","termid":"MONDO:0003241"},{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01718":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"cerebral cavernous malformation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:418825","Orphanet:164","icd11.foundation:916773262","UMLS:C2919945","DOID:0060669"],"synonyms":[{"name":"CCM","type":"exact"},{"name":"brain cavernous hemangioma","type":"exact"},{"name":"cavernous angiomatous malformations","type":"exact"},{"name":"cerebral capillary malformations","type":"exact"},{"name":"cerebral cavernous malformation","type":"exact"},{"name":"familial cavernous angioma","type":"related"}],"termid":"MONDO:0000820","terms_by_termid":{"MONDO:0975952":null},"xrefs":{"Monarch":{"xref_id":"0000820"}}}


id: PBO:0113422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II subunit B12.6; contacts DNA; mutations affect transcription start site selection and fidelity of transcription; positively regulates ATG1 transcription as a key regulator of autophagy","termid":"PBO:0113422"}


id: PBO:0049952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIF1AP pseudogene 1","termid":"PBO:0049952"}


id: PBO:0034768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spindle pole body SUN domain protein Sad1","termid":"PBO:0034768"}


id: GO:1901936
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of beta-caryophyllene.","definition_xrefs":["GOC:TermGenie","PMID:22867794"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpene catabolic process","termid":"GO:0051763"},{"relation_name":"is_a","term_name":"beta-caryophyllene metabolic process","termid":"GO:1901935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"beta-caryophyllene catabolic process","synonyms":[{"name":"beta-caryophyllene breakdown","type":"exact"},{"name":"beta-caryophyllene catabolism","type":"exact"},{"name":"beta-caryophyllene degradation","type":"exact"}],"termid":"GO:1901936"}


id: GO:0004083
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2,3-bisphospho-D-glycerate + H2O = 3-phospho-D-glycerate + phosphate.","definition_xrefs":["PMID:9452443","PMID:8567632"],"gene_count":0,"genotype_count":0,"name":"obsolete bisphosphoglycerate 2-phosphatase activity (obsolete GO:0004083)","termid":"GO:0004083"}


id: MONDO:0004605
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"skin disorder","termid":"MONDO:0005093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"chronic ulcer of skin","secondary_identifiers":["MEDGEN:510410","SCTID:19429009","UMLS:C0157738","DOID:8549","ICD9:707","ICD9:707.8","ICD9:707.9"],"synonyms":[{"name":"callous ulcer","type":"exact"},{"name":"callous ulcer (morphologic abnormality)","type":"exact"},{"name":"indolent ulcer","type":"exact"},{"name":"indolent ulcer (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0004605","xrefs":{"Monarch":{"xref_id":"0004605"}}}


id: PBO:0084784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial phosphatidate cytidylyltransferase (CDP-DAG synthase); required for cardiolipin biosynthesis; viability of null mutant is strain-dependent; mRNA is targeted to the bud; mutant displays defect in mitochondrial protein import, likely due to altered membrane lipid composition","termid":"PBO:0084784"}


id: MONDO:0019112
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cancer associated retinopathy (CAR) is a paraneoplastic disease of the eye associated with the presence of extraocular malignancy and circulating autoantibodies against retinal proteins.","definition_xrefs":["Orphanet:71505"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinal disorder","termid":"MONDO:0005283"},{"relation_name":"is_a","term_name":"paraneoplastic neurologic syndrome","termid":"MONDO:0018215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cancer-associated retinopathy","secondary_identifiers":["icd11.foundation:1216073790","ICD9:362.10","MEDGEN:729915","GARD:18912","UMLS:C1321315","MESH:D059545","SCTID:404663008"],"synonyms":[{"name":"CAR syndrome","type":"exact"},{"name":"paraneoplastic retinopathy","type":"exact"}],"termid":"MONDO:0019112","xrefs":{"Monarch":{"xref_id":"0019112"}}}


id: MONDO:0044792
data:
  {"annotated_genes":["SJAG_03453"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88631],"is_not":false,"summary":null,"term":"MONDO:0044792"}]},"cv_name":"mondo","definition":"A large, or giant, congenital melanocytic nevus (LCMN or GCMN) is a pigmented skin lesion of more than 20 cm - or 40 cm- respectively, projected adult diameter, composed of melanocytes, and presenting with an elevated risk of malignant transformation.","definition_xrefs":["Orphanet:626"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melanocytic nevus","termid":"MONDO:0005073"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03453":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"large congenital melanocytic nevus","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["icd11.foundation:618273329","NORD:1184","OMIM:137550","SCTID:254815002","UMLS:C1842036","ICDO:8761/1","MedDRA:10072036","NCIT:C4234","DOID:0111359","GARD:2469","SCTID:398696001","NCIT:C3944","ONCOTREE:SKCN","MEDGEN:330752"],"synonyms":[{"name":"CMNS","type":"related"},{"name":"GMN","type":"exact"},{"name":"GPHN","type":"related"},{"name":"Giant Congenital Melanocytic Nevus","type":"exact"},{"name":"LCMN","type":"exact"},{"name":"bathing trunk nevus","type":"exact"},{"name":"congenital giant pigmented nevus","type":"related"},{"name":"congenital hairy nevus","type":"related"},{"name":"congenital melanocytic nevi","type":"exact"},{"name":"congenital melanocytic nevus","type":"exact"},{"name":"congenital melanocytic nevus of skin","type":"exact"},{"name":"congenital melanocytic nevus of the skin","type":"exact"},{"name":"congenital nevus","type":"related"},{"name":"congenital nevus of skin","type":"exact"},{"name":"congenital nevus of the skin","type":"exact"},{"name":"congenital pigmented melanocytic Nevus","type":"exact"},{"name":"congenital pigmented nevus","type":"exact"},{"name":"congenital pigmented nevus of skin","type":"exact"},{"name":"congenital pigmented nevus of the skin","type":"exact"},{"name":"congenital pigmented skin nevus","type":"exact"},{"name":"congenital skin nevus","type":"exact"},{"name":"giant congenital melanocytic nevus","type":"related"},{"name":"giant congenital nevus","type":"exact"},{"name":"giant congenital pigmented Nevus","type":"related"},{"name":"giant hairy nevus","type":"related"},{"name":"giant pigmented hairy nevus","type":"exact"},{"name":"giant pigmented nevus","type":"related"},{"name":"giant pigmented nevus of skin","type":"exact"},{"name":"giant pigmented nevus of the skin","type":"exact"},{"name":"large congenital melanocytic nevus","type":"exact"},{"name":"melanocytic nevus syndrome, congenital","type":"related"},{"name":"melanocytic nevus syndrome, congenital, somatic","type":"exact"},{"name":"nevus spilus","type":"related"},{"name":"pigmented moles","type":"related"},{"name":"spitz nevus","type":"related"},{"name":"spitz nevus or nevus spilus, somatic","type":"exact"}],"termid":"MONDO:0044792","terms_by_termid":{"MONDO:0044792":null},"xrefs":{"Monarch":{"xref_id":"0044792"}}}


id: MONDO:0008277
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A polyp that arises from the stomach. This category includes neoplastic polyps (intestinal-type adenomatous polyps, gastric-type adenomas, and fundic gland polyps), and non-neoplastic polyps (hyperplastic polyps and hamartomatous polyps).","definition_xrefs":["NCIT:C3954"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stomach disorder","termid":"MONDO:0004298"},{"relation_name":"is_a","term_name":"polyp","termid":"MONDO:0005079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"stomach polyp","secondary_identifiers":["MESH:C562464","SCTID:87252009","MEDGEN:68629","UMLS:C0236048"],"synonyms":[{"name":"gastric polyp","type":"exact"},{"name":"gastric polyposa","type":"exact"},{"name":"gastric polyposis","type":"related"},{"name":"polyps of stomach","type":"exact"},{"name":"polyps of the stomach","type":"exact"}],"termid":"MONDO:0008277","xrefs":{"Monarch":{"xref_id":"0008277"}}}


id: GO:2000609
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of thyroid hormone generation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hormone metabolic process","termid":"GO:0032350"},{"relation_name":"regulates","term_name":"thyroid hormone generation","termid":"GO:0006590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of thyroid hormone generation","termid":"GO:2000609"}


id: GO:0032375
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of cholesterol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of sterol transport","termid":"GO:0032372"},{"relation_name":"is_a","term_name":"regulation of cholesterol transport","termid":"GO:0032374"},{"relation_name":"negatively_regulates","term_name":"cholesterol transport","termid":"GO:0030301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of cholesterol transport","synonyms":[{"name":"down regulation of cholesterol transport","type":"exact"},{"name":"down-regulation of cholesterol transport","type":"exact"},{"name":"downregulation of cholesterol transport","type":"exact"},{"name":"inhibition of cholesterol transport","type":"narrow"}],"termid":"GO:0032375"}


id: MONDO:0022803
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coloboma porencephaly hydronephrosis","termid":"MONDO:0022803","xrefs":{"Monarch":{"xref_id":"0022803"}}}


id: PBO:0034702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane bound O-acyltransferase, MBOAT Gup1 (predicted)","termid":"PBO:0034702"}


id: MONDO:0008427
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sister chromatid exchange, frequency of","secondary_identifiers":["UMLS:C1866942","OMIM:182220","MEDGEN:357877"],"synonyms":[{"name":"SCE, frequency of","type":"related"},{"name":"sister chromatid exchange, frequency of","type":"exact"}],"termid":"MONDO:0008427","xrefs":{"Monarch":{"xref_id":"0008427"}}}


id: PBO:0088411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pentafunctional aromatic polypeptide Aro1","termid":"PBO:0088411"}


id: PBO:0075098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 147","termid":"PBO:0075098"}


id: PR:O94660
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nitrilase homolog 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02781","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolase nit2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC651.02","secondary_identifiers":["UniProtKB:O94660"],"synonyms":[{"name":"Spom972h-NIT1","type":"exact"}],"termid":"PR:O94660"}


id: GO:0071192
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A voltage-gated potassium channel complex that contains the Kv channel interacting protein KChIP1 associated with the channel via interaction with the Kv alpha subunit 4.2.","definition_xrefs":["PMID:15356203"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated potassium channel complex","termid":"GO:0008076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"Kv4.2-KChIP1 channel complex","secondary_identifiers":["CORUM:606"],"termid":"GO:0071192"}


id: PBO:0051792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IQCH antisense RNA 1","termid":"PBO:0051792"}


id: MONDO:0002216
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A sarcoma arising from the brain.","definition_xrefs":["NCIT:C5154"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brain cancer","termid":"MONDO:0001657"},{"relation_name":"is_a","term_name":"central nervous system sarcoma","termid":"MONDO:0002217"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"brain sarcoma","secondary_identifiers":["DOID:2132","MEDGEN:272381","UMLS:C1332607"],"synonyms":[{"name":"brain sarcoma","type":"exact"},{"name":"primary brain sarcoma","type":"exact"},{"name":"sarcoma of brain","type":"exact"},{"name":"sarcoma of the brain","type":"exact"}],"termid":"MONDO:0002216","xrefs":{"Monarch":{"xref_id":"0002216"}}}


id: PBO:0046321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enolase 1 pseudogene 2","termid":"PBO:0046321"}


id: PBO:0083020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deleted ORF; does not encode a protein; included in the original annotation of Chromosome I but later withdrawn","termid":"PBO:0083020"}


id: GO:0033481
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of galacturonate, the anion of galacturonic acid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galacturonate metabolic process","termid":"GO:0019586"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"galacturonate biosynthetic process","synonyms":[{"name":"galacturonate anabolism","type":"exact"},{"name":"galacturonate biosynthesis","type":"exact"},{"name":"galacturonate formation","type":"exact"},{"name":"galacturonate synthesis","type":"exact"}],"termid":"GO:0033481"}


id: MOD:01025
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tyrosine residue to 3'-bromo-L-tyrosine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monobrominated tyrosine","termid":"MOD:01000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-bromo-L-tyrosine","synonyms":[{"name":"3'-BrTyr","type":"exact"}],"termid":"MOD:01025"}


id: MONDO:0015430
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ring chromosome 1 syndrome is an autosomal anomaly characterized by variable clinical features, most commonly including significant intrauterine and postnatal growth failure, developmental delay, intellectual disability, microcephaly, and dysmorphic facial features. Some less frequent clinical features are dysgenesis of corpus callosum, atrial septal defect, rocker bottom feet and clinodactyly.","definition_xrefs":["Orphanet:1437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 1 disorder","termid":"MONDO:0700008"},{"relation_name":"is_a","term_name":"ring chromosome disorder","termid":"MONDO:0700091"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring chromosome 1","secondary_identifiers":["GTR:AN0102272","GARD:1320","MESH:C535361","UMLS:C0265395","SCTID:47017007","MEDGEN:539215","NCIT:C36474"],"synonyms":[{"name":"R1","type":"related"},{"name":"Ring 1","type":"exact"},{"name":"Ring chromosome 1 syndrome","type":"related"},{"name":"Ring chromosome type 1","type":"exact"},{"name":"chromosome 1 ring","type":"related"},{"name":"chromosome 1, ring","type":"related"},{"name":"r(1) syndrome","type":"exact"}],"termid":"MONDO:0015430","xrefs":{"Monarch":{"xref_id":"0015430"}}}


id: GO:0034936
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 4,6-dichloro-3-methylcatechol + O2 = 3,5-dichloro-3-methyl-cis,cis-muconate + 2 H+.","definition_xrefs":["UM-BBD_reactionID:r0959"],"gene_count":0,"genotype_count":0,"name":"obsolete 4,6-dichloro-3-methylcatechol 1,2-dioxygenase activity (obsolete GO:0034936)","termid":"GO:0034936"}


id: PBO:0074023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 15 pseudogene 1","termid":"PBO:0074023"}


id: GO:0140974
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process carried out at the cellular level that reduces or removes the toxicity of a sulfide. These may include chemical modification or transport of sulfide away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance.","definition_xrefs":["PMID:25747485","PMID:20077566"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular detoxification","termid":"GO:1990748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098754"}],"interesting_parent_ids":["GO:0008150","GO:0098754"],"is_obsolete":false,"name":"cellular detoxification of sulfide","termid":"GO:0140974"}


id: GO:0005077
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binds to MAP kinase and anchors it to a particular subcellular location.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete MAP-kinase anchoring activity (obsolete GO:0005077)","synonyms":[{"name":"MAP-kinase anchor protein activity","type":"exact"},{"name":"MAP-kinase anchoring activity","type":"exact"}],"termid":"GO:0005077"}


id: GO:0061482
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an irinotecan stimulus.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to irinotecan","termid":"GO:0061482"}


id: PBO:0046118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4E binding protein 2 pseudogene 2","termid":"PBO:0046118"}


