# terms

id: GO:0004522
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endonucleolytic cleavage of RNA to 3'-phosphomononucleotides and 3'-phosphooligonucleotides ending in C-P or U-P with 2',3'-cyclic phosphate intermediates.","definition_xrefs":["EC:4.6.1.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA endonuclease activity","termid":"GO:0004521"},{"relation_name":"is_a","term_name":"phosphorus-oxygen lyase activity","termid":"GO:0016849"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829","GO:0140098"],"is_obsolete":false,"name":"ribonuclease A activity","secondary_identifiers":["Wikipedia:Ribonuclease_A"],"synonyms":[{"name":"RNase A activity","type":"related"},{"name":"RNase I activity","type":"related"},{"name":"RNase activity","type":"broad"},{"name":"S-genotype-assocd. glycoproteins","type":"related"},{"name":"SLSG glycoproteins","type":"related"},{"name":"alkaline ribonuclease activity","type":"exact"},{"name":"ceratitis capitata alkaline ribonuclease activity","type":"exact"},{"name":"endoribonuclease I","type":"related"},{"name":"gene S glycoproteins","type":"related"},{"name":"gene S locus-specific glycoproteins","type":"related"},{"name":"pancreatic RNase activity","type":"related"},{"name":"pancreatic ribonuclease activity","type":"narrow"},{"name":"ribonuclease I activity","type":"related"},{"name":"ribonucleate 3'-pyrimidino-oligonucleotidohydrolase activity","type":"exact"},{"name":"ribonucleic phosphatase activity","type":"exact"}],"termid":"GO:0004522"}


id: PBO:0003247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3-phosphate dehydrogenase Gpd3","termid":"PBO:0003247"}


id: FYPO:0004957
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a specific substance measured in the mitochondrion differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"altered level of substance in mitochondrion","synonyms":[{"name":"abnormal level of substance in mitochondrion","type":"exact"},{"name":"abnormal level of substance in mitochondrion during vegetative growth","type":"exact"},{"name":"abnormal mitochondrial level of substance","type":"exact"},{"name":"altered level of substance in mitochondrion during mitotic cell cycle","type":"related"},{"name":"altered mitochondrial level of substance","type":"exact"}],"termid":"FYPO:0004957"}


id: PBO:0036102
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K9_methylation_at_heterochromatin_island_during_vegetative_growth","termid":"PBO:0036102"}


id: PBO:0084642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Microtubule-associated protein; component of the interface between microtubules and kinetochore, involved in sister chromatid separation; essential in polyploid cells but not in haploid or diploid cells; promotes plus-end directed movement of Dyn1p; ortholog of mammalian CLIP-170","termid":"PBO:0084642"}


id: GO:1901976
data:
  {"annotated_genes":["SJAG_03681","SJAG_03126","SJAG_00883","SJAG_01297","SJAG_02169","SJAG_04259","SJAG_03353","SJAG_02336","SJAG_01837","SJAG_01679","SJAG_03327","SJAG_02451"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[116269,92595,115777,105826,113946,117903,109188,101506,110218],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902426"},{"annotations":[96084],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140499"},{"annotations":[115782],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905326"},{"annotations":[118682],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090267"},{"annotations":[103269],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905325"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell cycle checkpoint.","definition_xrefs":["PMID:23028116","GOC:TermGenie","GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle phase transition","termid":"GO:1901987"},{"relation_name":"is_a","term_name":"regulation of intracellular signal transduction","termid":"GO:1902531"},{"relation_name":"regulates","term_name":"cell cycle checkpoint signaling","termid":"GO:0000075"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00883":null,"SJAG_01297":null,"SJAG_01679":null,"SJAG_01837":null,"SJAG_02169":null,"SJAG_02336":null,"SJAG_02451":null,"SJAG_03126":null,"SJAG_03327":null,"SJAG_03353":null,"SJAG_03681":null,"SJAG_04259":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0007049"],"is_obsolete":false,"name":"regulation of cell cycle checkpoint","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:2001047"],"synonyms":[{"name":"regulation of G1/S checkpoint","type":"related"},{"name":"regulation of G1/S transition checkpoint","type":"related"}],"termid":"GO:1901976","terms_by_termid":{"GO:0090267":null,"GO:0140499":null,"GO:1902426":null,"GO:1905325":null,"GO:1905326":null}}


id: GO:0097158
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a pyrimidine-rich (CU-rich) intronic sequence of a pre-messenger RNA (pre-mRNA).","definition_xrefs":["GOC:ans","PMID:16260624","PMID:16777844"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pre-mRNA intronic binding","termid":"GO:0097157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003723","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"pre-mRNA intronic pyrimidine-rich binding","synonyms":[{"name":"pre-messenger RNA intronic pyrimidine-rich binding","type":"exact"}],"termid":"GO:0097158"}


id: CHEBI:29105
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"A zinc cation that has formula Zn.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc(2+)","termid":"CHEBI:29105"}


id: PBO:0026980
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_prospore_membrane","termid":"PBO:0026980"}


id: GO:0061247
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the mesonephric glomerular mesangium over time, from its formation to the mature structure. The mesonephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the mesonephros, which helps to support the capillary loops in a renal glomerulus.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerular mesangium development","termid":"GO:0072109"},{"relation_name":"part_of","term_name":"mesonephric glomerulus vasculature development","termid":"GO:0061231"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric glomerular mesangium development","termid":"GO:0061247"}


id: SO:0001408
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The C-terminal residues of a polypeptide which are exchanged for a GPI-anchor.","definition_xrefs":["EBI:rh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cleaved_peptide_region","termid":"SO:0100011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"cleaved_for_gpi_anchor_region","synonyms":[{"name":"cleaved for gpi anchor region","type":"exact"}],"termid":"SO:0001408"}


id: GO:1990147
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a talin, a family of related cytoskeletal proteins that play a role in assembly of actin filaments and migration of various cell types.","definition_xrefs":["GOC:hjd","PMID:23372168"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeletal protein binding","termid":"GO:0008092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0008092","GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"talin binding","termid":"GO:1990147"}


id: PBO:0108923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRNT1 pseudogene 1","termid":"PBO:0108923"}


id: MONDO:0018949
data:
  {"annotated_genes":["SJAG_00044","SJAG_02431","SJAG_03815","SJAG_02919","SJAG_03703","SJAG_04567"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87085,87084],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008050"},{"annotations":[88037,88036,88038],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012130"},{"annotations":[87934],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014877"}]},"cv_name":"mondo","definition":"Distal myopathy refers to a group of muscle diseases which share the clinical pattern of predominant weakness and atrophy beginning in the feet and/or hands.","definition_xrefs":["Orphanet:599"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy","termid":"MONDO:0020121"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00044":null,"SJAG_02431":null,"SJAG_02919":null,"SJAG_03703":null,"SJAG_03815":null,"SJAG_04567":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"distal myopathy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NCIT:C84675","icd11.foundation:596283352","OMIMPS:160500","MEDGEN:155541","UMLS:C0751336","DOID:11720","GARD:18699","NANDO:1200216","SCTID:58795000"],"synonyms":[{"name":"Miyoshi muscular dystrophy","type":"narrow"},{"name":"distal muscular dystrophy","type":"exact"},{"name":"distal myopathy","type":"exact"}],"termid":"MONDO:0018949","terms_by_termid":{"MONDO:0008050":null,"MONDO:0012130":null,"MONDO:0014877":null},"xrefs":{"Monarch":{"xref_id":"0018949"}}}


id: PBO:0066900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 200","termid":"PBO:0066900"}


id: GO:0018624
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + NADH + O2 + toluene = (1S,2R)-3-methylcyclohexa-3,5-diene-1,2-diol + NAD+.","definition_xrefs":["RHEA:16737","EC:1.14.12.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"toluene dioxygenase activity","secondary_identifiers":["KEGG_REACTION:R03559","UM-BBD_enzymeID:r0253","MetaCyc:TOLUENE-DIOXYGENASE-RXN"],"synonyms":[{"name":"toluene 1,2-dioxygenase activity","type":"related"},{"name":"toluene 2,3-dioxygenase activity","type":"related"},{"name":"toluene,NADH:oxygen oxidoreductase (1,2-hydroxylating)","type":"related"}],"termid":"GO:0018624"}


id: PBO:0042227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin Y","termid":"PBO:0042227"}


id: PBO:0018025
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human CDK7","termid":"PBO:0018025"}


id: PBO:0073620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sialic acid binding Ig like lectin 6","termid":"PBO:0073620"}


id: MONDO:0850087
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary hypomagnesemia-generalized seizures-intellectual disability-obesity syndrome","secondary_identifiers":["UMLS:C5681826","MEDGEN:1842330","Orphanet:620363","GARD:22484"],"termid":"MONDO:0850087","xrefs":{"Monarch":{"xref_id":"0850087"}}}


id: GO:1905883
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of triglyceride transport.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:25849533"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of acylglycerol transport","termid":"GO:1901506"},{"relation_name":"regulates","term_name":"triglyceride transport","termid":"GO:0034197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of triglyceride transport","synonyms":[{"name":"regulation of triacylglycerol transport","type":"exact"}],"termid":"GO:1905883"}


id: GO:0021794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the thalamus changes over time, from its initial formation to its mature state.","definition_xrefs":["GOC:dgh","GOC:jid","GOC:cls","GO_REF:0000021","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"diencephalon development","termid":"GO:0021536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thalamus development","termid":"GO:0021794"}


id: PR:O74423
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ent1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74423"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epsin-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC162.07","synonyms":[{"name":"Spom972h-ent1","type":"exact"}],"termid":"PR:O74423"}


id: PBO:0073327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family A member 3","termid":"PBO:0073327"}


id: FYPO:0001866
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of adenylyl cyclase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000654","FYPO:0000652"],"is_obsolete":false,"name":"normal adenylyl cyclase activity","synonyms":[{"name":"normal adenylate cyclase activity","type":"exact"}],"termid":"FYPO:0001866"}


id: PBO:0079127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"teashirt zinc finger homeobox 3","termid":"PBO:0079127"}


id: PBO:0048656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gap junction protein epsilon 1","termid":"PBO:0048656"}


id: GO:0141075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process in which a symbiont interferes with, inhibits or disrupt a JAK-STAT signal cascade in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:27437422","PMID:20624917","PMID:22919663","PMID:29924996","PMID:31413201"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression of host JAK-STAT cascade (obsolete GO:0141075)","synonyms":[{"name":"disruption of host JAK-STAT cascade","type":"exact"},{"name":"down-regulation of host JAK-STAT cascade","type":"exact"},{"name":"downregulation of host JAK-STAT cascade","type":"exact"},{"name":"inhibition of host JAK-STAT cascade","type":"narrow"},{"name":"negative regulation of host JAK-STAT cascade","type":"exact"},{"name":"suppression of host JAK-STAT cascade","type":"exact"},{"name":"symbiont-mediated suppression of host JAK-STAT cascade","type":"related"}],"termid":"GO:0141075"}


id: PBO:0083977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glucosidase II beta subunit, forms a complex with alpha subunit Rot2p; involved in removal of two glucose residues from N-linked glycans during glycoprotein biogenesis in the ER; relocalizes from ER to cytoplasm upon DNA replication stress","termid":"PBO:0083977"}


id: PBO:0031428
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_glycerol_dehydrogenase_activity","termid":"PBO:0031428"}


id: PBO:0046020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 2A pseudogene 1","termid":"PBO:0046020"}


id: PBO:0040700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 like 1","termid":"PBO:0040700"}


id: GO:0072011
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the glomerular endothelium over time, from its formation to the mature structure. The glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endothelium development","termid":"GO:0003158"},{"relation_name":"is_a","term_name":"glomerular epithelium development","termid":"GO:0072010"},{"relation_name":"part_of","term_name":"glomerulus vasculature development","termid":"GO:0072012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glomerular endothelium development","termid":"GO:0072011"}


id: MONDO:0859296
data:
  {"annotated_genes":["SJAG_00712"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87596],"is_not":false,"summary":null,"term":"MONDO:0859296"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neurodevelopmental disorder","termid":"MONDO:0700092"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00712":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with poor growth, spastic tetraplegia, and hearing loss","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5774229","DOID:0081324","MEDGEN:1824002","OMIM:620071"],"termid":"MONDO:0859296","terms_by_termid":{"MONDO:0859296":null},"xrefs":{"Monarch":{"xref_id":"0859296"}}}


id: PBO:0045097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DLX6 antisense RNA 2","termid":"PBO:0045097"}


id: PBO:0061980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily AT member 1 pseudogene","termid":"PBO:0061980"}


id: PBO:0059612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 24","termid":"PBO:0059612"}


id: MONDO:0002444
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A subtype of depression characterized by the inability to find pleasure in positive things combined with physical agitation, insomnia, or decreased appetite.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"depressive disorder","termid":"MONDO:0002050"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melancholia","secondary_identifiers":["EFO:1002014","NCIT:C34812","UMLS:C0025193","MEDGEN:6288","DOID:2848"],"synonyms":[{"name":"depression with melancholic features","type":"exact"},{"name":"melancholic depression","type":"exact"}],"termid":"MONDO:0002444","xrefs":{"Monarch":{"xref_id":"0002444"}}}


id: GO:0033556
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the addition of a glucose residue to the lipid-linked oligosaccharide precursor for N-linked glycosylation; the transfer of glucose from dolichyl phosphate glucose (Dol-P-Glc) on to the lipid-linked oligosaccharide Man(7)GlcNAc(2)-PP-Dol.","definition_xrefs":["PMID:10336995","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosyltransferase activity","termid":"GO:0046527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016757","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"dolichyl pyrophosphate Man7GlcNAc2 alpha-1,3-glucosyltransferase activity","synonyms":[{"name":"dolichyl-P-Glc:Man7GlcNAc2-PP-dolichyl glucosyltransferase activity","type":"exact"}],"termid":"GO:0033556"}


id: FYPO:0003003
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to centromere during vegetative growth","termid":"FYPO:0000451"},{"relation_name":"is_a","term_name":"abnormal protein localization to kinetochore during vegetative growth","termid":"FYPO:0001268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased protein localization to kinetochore during vegetative growth","synonyms":[{"name":"increased protein localisation to kinetochore during vegetative growth","type":"exact"},{"name":"increased protein localization to kinetochore during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003003"}


id: PBO:0002875
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.2.4.1","termid":"PBO:0002875"}


id: GO:0015522
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: hydrophobic uncoupler(in) + H+(out) = hydrophobic uncoupler(out) + H+(in). Hydrophobic uncouplers include CCCP, benzalkonium and SDS.","definition_xrefs":["TC:2.A.1.2.9"],"gene_count":0,"genotype_count":0,"name":"obsolete hydrophobic uncoupler:proton antiporter activity (obsolete GO:0015522)","synonyms":[{"name":"hydrophobic uncoupler:hydrogen antiporter activity","type":"exact"}],"termid":"GO:0015522"}


id: GO:0150024
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an oxidised low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.","definition_xrefs":["PMID:27607416","GOC:aruk","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma lipoprotein particle clearance","termid":"GO:0034381"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oxidised low-density lipoprotein particle clearance","synonyms":[{"name":"ox-LDL particle clearance","type":"exact"},{"name":"oxLDL particle clearance","type":"exact"},{"name":"oxidised LDL particle clearance","type":"exact"},{"name":"oxidized LDL particle clearance","type":"exact"},{"name":"oxidized low-density lipoprotein particle clearance","type":"exact"}],"termid":"GO:0150024"}


id: PBO:0004925
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argininosuccinate lyase (predicted)","termid":"PBO:0004925"}


id: GO:0002482
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class Ib protein complex following intracellular transport via a pathway not requiring TAP (transporter associated with antigen processing). The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family.","definition_xrefs":["GOC:add","PMID:15928678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of exogenous peptide antigen via MHC class Ib","termid":"GO:0002477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-independent","synonyms":[{"name":"TAP-independent antigen processing and presentation of exogenous peptide antigen via MHC class Ib","type":"exact"},{"name":"TAP-independent exogenous peptide antigen processing and presentation via MHC class Ib","type":"exact"},{"name":"exogenous peptide antigen processing and presentation via MHC class Ib, TAP-independent","type":"exact"}],"termid":"GO:0002482"}


id: FYPO:0007090
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of transcription as a consequence of the presence of one or more specific nutrient(s) is abnormal. For example, specific genes that are normally not transcribed in the presence of the nutrient may be transcribed in the mutant, or vice versa.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response phenotype during vegetative growth","termid":"FYPO:0001342"},{"relation_name":"is_a","term_name":"abnormal regulation of transcription during vegetative growth","termid":"FYPO:0004527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0006551","FYPO:0000298"],"is_obsolete":false,"name":"abnormal regulation of transcription by nutrient","synonyms":[{"name":"abnormal regulation of transcription by nutrient during mitotic cell cycle","type":"related"},{"name":"abnormal regulation of transcription by nutrient during vegetative growth","type":"exact"},{"name":"nutrient-insensitive transcription","type":"related"}],"termid":"FYPO:0007090"}


id: GO:0160242
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) + NAD+ = a 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerone) + NADH + H+.","definition_xrefs":["PMID:26338420","RHEA:81099"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"phosphatidylglycerol dehydrogenase (NAD+) activity","termid":"GO:0160242"}


id: GO:0038045
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex containing latency-associated proteins (LAPs), mature disulphide-linked dimeric TGF-beta, and latent TGF-beta binding proteins (LTBPs). TGF-beta is mostly secreted as part of the large latent complex, and must be subsequently released from the LLC in order to bind to cell surface receptors.","definition_xrefs":["PMID:2350783","PMID:9805445","GOC:bf","PMID:8680476"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"large latent transforming growth factor-beta complex","synonyms":[{"name":"LLC","type":"exact"},{"name":"large latent complex","type":"exact"}],"termid":"GO:0038045"}


id: PBO:0050863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inhibitor of DNA binding 2","termid":"PBO:0050863"}


id: MONDO:0034923
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete inflammatory/autoimmune disorder involving the lacrimal system (obsolete MONDO:0034923)","secondary_identifiers":["Orphanet:519264"],"termid":"MONDO:0034923","xrefs":{"Monarch":{"xref_id":"0034923"}}}


id: PR:Q9P7W0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An optic atrophy 3 protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12499:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OPA3-like protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1703.11","secondary_identifiers":["UniProtKB:Q9P7W0"],"synonyms":[{"name":"Spom972h-OPA3","type":"exact"}],"termid":"PR:Q9P7W0"}


id: PBO:0038910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion G protein-coupled receptor E5","termid":"PBO:0038910"}


id: FYPO:0005516
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome occupancy is lower than normal in regions of euchromatin. Nucleosome occupancy measures the tendency for DNA in a given region to be packaged into nucleosomes.","definition_xrefs":["PMID:22990236","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nucleosome positioning in euchromatin","termid":"FYPO:0000854"},{"relation_name":"is_a","term_name":"decreased nucleosome occupancy","termid":"FYPO:0004491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000641","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased nucleosome occupancy in euchromatin","synonyms":[{"name":"decreased nucleosome occupancy in euchromatin during mitotic cell cycle","type":"related"},{"name":"decreased nucleosome occupancy in euchromatin during vegetative growth","type":"exact"},{"name":"reduced nucleosome occupancy in euchromatin","type":"exact"}],"termid":"FYPO:0005516"}


id: MONDO:0010036
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any secretory diarrhea in which the cause of the disease is a mutation in the SPINT2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital sodium diarrhea","termid":"MONDO:0015170"},{"relation_name":"is_a","term_name":"congenital secretory diarrhea","termid":"MONDO:0045032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"congenital secretory sodium diarrhea 3","secondary_identifiers":["DOID:0060781","GARD:18260","OMIM:270420","MEDGEN:1778108","UMLS:C5441927"],"synonyms":[{"name":"DIAR3","type":"related"},{"name":"SPINT2 secretory diarrhea","type":"exact"},{"name":"SPINT2 secretory diarrhoea","type":"exact"},{"name":"congenital secretory sodium diarrhea 3 syndromic","type":"exact"},{"name":"congenital secretory sodium diarrhea 3 with or without other congenital anomalies","type":"exact"},{"name":"congenital secretory sodium diarrhea type 3","type":"exact"},{"name":"congenital secretory sodium diarrhoea 3 syndromic","type":"exact"},{"name":"congenital secretory sodium diarrhoea 3 with or without other congenital anomalies","type":"exact"},{"name":"congenital secretory sodium diarrhoea type 3","type":"exact"},{"name":"diarrhea 3, secretory sodium, congenital, syndromic","type":"related"},{"name":"diarrhea 3, secretory sodium, congenital, with or without other congenital anomalies","type":"related"},{"name":"diarrhoea 3, secretory sodium, congenital, syndromic","type":"related"},{"name":"diarrhoea 3, secretory sodium, congenital, with or without other congenital anomalies","type":"related"},{"name":"secretory diarrhea caused by mutation in SPINT2","type":"exact"},{"name":"secretory diarrhoea caused by mutation in SPINT2","type":"exact"},{"name":"sodium diarrhea, congenital","type":"related"}],"termid":"MONDO:0010036","xrefs":{"Monarch":{"xref_id":"0010036"}}}


id: PBO:0047553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FGF10 antisense RNA 1","termid":"PBO:0047553"}


id: PBO:0040169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"asparagine synthetase domain containing 1","termid":"PBO:0040169"}


id: GO:0035165
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an embryonic mesoderm-derived hemocyte precursor cell acquires the specialized features of a crystal cell. Crystal cells are a class of cells that contain crystalline inclusions and are involved in the melanization of pathogenic material in the hemolymph.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic hemocyte differentiation","termid":"GO:0035163"},{"relation_name":"is_a","term_name":"crystal cell differentiation","termid":"GO:0042688"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic crystal cell differentiation","termid":"GO:0035165"}


id: PBO:0075333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorbin and SH3 domain containing 2","termid":"PBO:0075333"}


id: PBO:0111889
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead domain","termid":"PBO:0111889"}


id: GO:0051580
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of a neurotransmitter into a neuron or glial cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neurotransmitter transport","termid":"GO:0051588"},{"relation_name":"regulates","term_name":"neurotransmitter uptake","termid":"GO:0001504"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of neurotransmitter uptake","synonyms":[{"name":"regulation of neurotransmitter import","type":"exact"},{"name":"regulation of neurotransmitter reuptake","type":"exact"}],"termid":"GO:0051580"}


id: GO:0106326
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3-O-[N-acetyl-beta-D-glucosaminyl-(1->3)-N-acetyl-alpha-D-galactosaminyl]-L-threonyl-[protein] + UDP-N-acetyl-alpha-D-glucosamine = 3-O-[N-acetyl-beta-D-glucosaminyl-(1->3)-[N-acetyl-beta-D-glucosaminyl-(1->6)]-N-acetyl-alpha-D-galactosaminyl]-L-threonyl-[protein] + H+ + UDP.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete acetylgalactosaminyl-O-glycosyl-threonyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity (obsolete GO:0106326)","termid":"GO:0106326"}


id: GO:0034296
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which zygospores are formed. Zygospores are characteristic of the zygomycete fungi (phylum Zygomycota) thick-walled and darkly colored, and usually heavily ornamented as well, with many spines or ridges. It is formed between two specialized organs called suspensors, which are themselves usually heavily ornamented, one from each mating partner. The zygospore forms between them and then breaks away.","definition_xrefs":["GOC:mah","GOC:ds","PMID:21858438"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sexual sporulation resulting in formation of a cellular spore","termid":"GO:0043935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"zygospore formation","termid":"GO:0034296"}


id: PBO:0046577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 19, envelope","termid":"PBO:0046577"}


id: MONDO:1012379
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"guttural pouch tympany, non-human animal","termid":"MONDO:1011929"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guttural pouch tympany, horse","secondary_identifiers":["OMIA:001408-9796"],"termid":"MONDO:1012379","xrefs":{"Monarch":{"xref_id":"1012379"}}}


id: GO:0032731
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-1 beta production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of interleukin-1 beta production","termid":"GO:0032651"},{"relation_name":"is_a","term_name":"positive regulation of interleukin-1 production","termid":"GO:0032732"},{"relation_name":"positively_regulates","term_name":"interleukin-1 beta production","termid":"GO:0032611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of interleukin-1 beta production","secondary_identifiers":["GO:0050718","GO:0050725"],"synonyms":[{"name":"activation of interleukin-1 beta production","type":"narrow"},{"name":"positive regulation of IL-1 beta production","type":"exact"},{"name":"positive regulation of interleukin-1 beta biosynthetic process","type":"narrow"},{"name":"positive regulation of interleukin-1 beta secretion","type":"narrow"},{"name":"stimulation of interleukin-1 beta production","type":"narrow"},{"name":"up regulation of interleukin-1 beta production","type":"exact"},{"name":"up-regulation of interleukin-1 beta production","type":"exact"},{"name":"upregulation of interleukin-1 beta production","type":"exact"}],"termid":"GO:0032731"}


id: PBO:0080749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X antigen family member 5","termid":"PBO:0080749"}


id: PBO:0063606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"platelet factor 4","termid":"PBO:0063606"}


id: PBO:0053677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 862","termid":"PBO:0053677"}


id: GO:1905891
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of cellular response to thapsigargin.","definition_xrefs":["PMID:21803450","GO_REF:0000058","GOC:bc","GOC:TermGenie","GOC:aruk"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cellular response to thapsigargin (obsolete GO:1905891)","termid":"GO:1905891"}


id: GO:0046235
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of gallate, the anion of gallic acid (3,4,5-trihydroxybenzoic acid).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete gallate biosynthetic process (obsolete GO:0046235)","synonyms":[{"name":"gallate anabolism","type":"exact"},{"name":"gallate biosynthesis","type":"exact"},{"name":"gallate formation","type":"exact"},{"name":"gallate synthesis","type":"exact"},{"name":"gallic acid biosynthesis","type":"exact"},{"name":"gallic acid biosynthetic process","type":"exact"}],"termid":"GO:0046235"}


id: MONDO:0003650
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hepatoblastoma characterized by the presence of fetal and embryonal epithelial components and a mesenchymal component.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hepatoblastoma","termid":"MONDO:0018666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"mixed hepatoblastoma","secondary_identifiers":["DOID:5789","ICDO:8970/3","MEDGEN:233194","UMLS:C1334784","NCIT:C7097"],"synonyms":[{"name":"mixed epithelial and mesenchymal hepatoblastoma","type":"exact"}],"termid":"MONDO:0003650","xrefs":{"Monarch":{"xref_id":"0003650"}}}


id: SO:0000860
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Attribute describing sequence regions occurring in same order on chromosome of different species.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"conserved","termid":"SO:0000856"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntenic","secondary_identifiers":["http://en.wikipedia.org/wiki/Syntenic"],"termid":"SO:0000860"}


id: GO:0097090
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process which results in the assembly, arrangement of constituent parts, or disassembly of a presynaptic membrane, including any proteins associated with the membrane, but excluding other cellular components. A presynaptic membrane is a specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction.","definition_xrefs":["GOC:pr","GOC:BHF","PMID:19730411","GOC:sjp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane organization","termid":"GO:0061024"},{"relation_name":"part_of","term_name":"synapse organization","termid":"GO:0050808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"presynaptic membrane organization","synonyms":[{"name":"pre-synaptic membrane organization","type":"exact"},{"name":"presynaptic membrane organisation","type":"exact"}],"termid":"GO:0097090"}


id: GO:0034388
data:
  {"annotated_genes":["SJAG_02300","SJAG_00572","SJAG_00245","SJAG_00538","SJAG_04069"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[73156,73477,75360,78649,81541],"is_not":false,"summary":null,"term":"GO:0034388"}]},"cv_name":"cellular_component","definition":"A protein complex that forms a subcomplex of the 90S preribosome and can interact directly with the 5' External Transcribed Spacer (ETS) of the full length pre-rRNA transcript. In S. cerevisiae, it sediments at 25-30 S and is composed of Pwp2p, Dip2p, Utp21p, Utp13p, Utp18p, and Utp6p.","definition_xrefs":["PMID:15231838","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"nucleolus","termid":"GO:0005730"},{"relation_name":"part_of","term_name":"90S preribosome","termid":"GO:0030686"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00245":null,"SJAG_00538":null,"SJAG_00572":null,"SJAG_02300":null,"SJAG_04069":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005730"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0030684"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005730","GO:0005575","GO:0032991","GO:0030684","GO:0005634"],"is_obsolete":false,"name":"Pwp2p-containing subcomplex of 90S preribosome","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"25-30 S subcomplex of 90S preribosome","type":"exact"},{"name":"UTP-B complex","type":"exact"}],"termid":"GO:0034388","terms_by_termid":{"GO:0034388":null}}


id: SO:0000160
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A linear clone derived from lambda bacteriophage. The genes involved in the lysogenic pathway are removed from the from the viral DNA. Up to 25 kb of foreign DNA can then be inserted into the lambda genome.","definition_xrefs":["ISBN:0-1767-2380-8"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000160 lambda_clone (obsolete SO:0000160)","termid":"SO:0000160"}


id: GO:1901994
data:
  {"annotated_genes":["SJAG_01082","SJAG_01837","SJAG_04287","SJAG_03854","SJAG_04126","SJAG_01515","SJAG_02771","SJAG_04259","SJAG_04280","SJAG_03327","SJAG_01330","SJAG_00364"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108271,116496],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905318"},{"annotations":[108571,93309,118060],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033315"},{"annotations":[77147,118675],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033316"},{"annotations":[80374,72443],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110031"},{"annotations":[100606],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902103"},{"annotations":[115782],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905326"},{"annotations":[103269],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905325"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of meiotic cell cycle phase transition.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie","PMID:22841721"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of meiotic cell cycle","termid":"GO:0051447"},{"relation_name":"is_a","term_name":"negative regulation of cell cycle phase transition","termid":"GO:1901988"},{"relation_name":"is_a","term_name":"regulation of meiotic cell cycle phase transition","termid":"GO:1901993"},{"relation_name":"negatively_regulates","term_name":"meiotic cell cycle phase transition","termid":"GO:0044771"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_01082":null,"SJAG_01330":null,"SJAG_01515":null,"SJAG_01837":null,"SJAG_02771":null,"SJAG_03327":null,"SJAG_03854":null,"SJAG_04126":null,"SJAG_04259":null,"SJAG_04280":null,"SJAG_04287":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"negative regulation of meiotic cell cycle phase transition","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of cell cycle transition","type":"broad"},{"name":"down regulation of meiotic cell cycle phase transition","type":"exact"},{"name":"down-regulation of cell cycle transition","type":"broad"},{"name":"down-regulation of meiotic cell cycle phase transition","type":"exact"},{"name":"downregulation of cell cycle transition","type":"broad"},{"name":"downregulation of meiotic cell cycle phase transition","type":"exact"},{"name":"inhibition of cell cycle transition","type":"broad"},{"name":"inhibition of meiotic cell cycle phase transition","type":"narrow"},{"name":"negative regulation of cell cycle transition","type":"broad"}],"termid":"GO:1901994","terms_by_termid":{"GO:0033315":null,"GO:0033316":null,"GO:0110031":null,"GO:1902103":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null}}


id: PBO:0017432
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-temporally_related_to","termid":"PBO:0017432"}


id: GO:0102922
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (3R)-3-amino-3-phenylpropanoyl-CoA + baccatin III = 3'-N-debenzoyl-2'-deoxytaxol + CoA.","definition_xrefs":["RHEA:42488"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"phenylpropanoyltransferase activity","secondary_identifiers":["MetaCyc:RXN-8857"],"termid":"GO:0102922"}


id: FYPO:0004978
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to a new growing cell tip is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to new cell tip","termid":"FYPO:0004977"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased protein localization to new growing cell tip","synonyms":[{"name":"increased protein localisation to new growing cell tip","type":"exact"},{"name":"increased protein localization to new growing cell end","type":"exact"},{"name":"increased protein localization to new growing cell tip during mitotic cell cycle","type":"related"},{"name":"increased protein localization to new growing cell tip during vegetative growth","type":"exact"}],"termid":"FYPO:0004978"}


id: PR:O60155
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- prs1 gene.","definition_xrefs":["UniProtKB:O60155","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline--tRNA ligase C19C7.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19C7.06","synonyms":[{"name":"ProRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-prs1","type":"exact"},{"name":"prolyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60155"}


id: MONDO:0003963
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"This is usually an oligoclonal CD8+ lymphocytic infiltration of various organs.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diffuse infiltrative lymphocytosis syndrome","secondary_identifiers":["DOID:6677","NCIT:C35699","UMLS:C1333292","SCTID:449784008","MEDGEN:232428"],"synonyms":[{"name":"diffuse infiltra. lymph. sydrome","type":"exact"},{"name":"diffuse infiltra. lymph. syndrome","type":"exact"}],"termid":"MONDO:0003963","xrefs":{"Monarch":{"xref_id":"0003963"}}}


id: PBO:0075894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"suppression of tumorigenicity 7","termid":"PBO:0075894"}


id: GO:0052588
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-acetoin + NAD+ = diacetyl + H+ + NADH. This reaction is catalyzed in the reverse direction.","definition_xrefs":["RHEA:27286"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetoin dehydrogenase (NAD+) activity","termid":"GO:0019152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"diacetyl reductase ((S)-acetoin forming) (NAD+) activity","secondary_identifiers":["MetaCyc:RXN-11032","EC:1.1.1.304","KEGG_REACTION:R09078"],"synonyms":[{"name":"(S)-acetoin dehydrogenase activity","type":"related"}],"termid":"GO:0052588"}


id: PBO:0069447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 712, pseudogene","termid":"PBO:0069447"}


id: GO:0140438
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent attachment of a stearoyl group to an amino acid in a protein.","definition_xrefs":["PMID:26214738"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein lipidation","termid":"GO:0006497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042158"}],"interesting_parent_ids":["GO:0042158","GO:0008150"],"is_obsolete":false,"name":"protein stearoylation","termid":"GO:0140438"}


id: MONDO:0044221
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete blood group--lutheran inhibitor (obsolete MONDO:0044221)","secondary_identifiers":["OMIM:111150"],"synonyms":[{"name":"INLU","type":"related"},{"name":"blood group--Lutheran INHIBITOR","type":"related"},{"name":"dominant 50U (A-B-) phenotype","type":"related"}],"termid":"MONDO:0044221","xrefs":{"Monarch":{"xref_id":"0044221"}}}


id: PBO:0116774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste receptor cell gene 1, pseudogene","termid":"PBO:0116774"}


id: MONDO:0019962
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lymphoma primarily involving the thyroid gland.","definition_xrefs":["NCIT:C5265"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thyroid cancer","termid":"MONDO:0002108"},{"relation_name":"is_a","term_name":"primary organ-specific lymphoma","termid":"MONDO:0017207"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005570"],"is_obsolete":false,"name":"thyroid lymphoma","secondary_identifiers":["UMLS:C1336753","icd11.foundation:571063415","DOID:10011","Orphanet:97285","GARD:19359","MEDGEN:234947"],"synonyms":[{"name":"lymphoma of the thyroid","type":"exact"},{"name":"lymphoma of the thyroid gland","type":"exact"},{"name":"lymphoma of thyroid","type":"exact"},{"name":"lymphoma of thyroid gland","type":"exact"},{"name":"primary thyroid gland lymphoma","type":"exact"},{"name":"thyroid gland lymphoma","type":"exact"},{"name":"thyroid lymphoma","type":"exact"}],"termid":"MONDO:0019962","xrefs":{"Monarch":{"xref_id":"0019962"}}}


id: FYPO:0004338
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing ethanol as the carbon source.","definition_xrefs":["PomBase:mah","PMID:22139357"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0002058","FYPO:0005447","FYPO:0001985","FYPO:0002060","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"abolished cell population growth on ethanol carbon source","synonyms":[{"name":"abolished ethanol utilization","type":"related"},{"name":"abolished growth on ethanol carbon source","type":"broad"},{"name":"abolished vegetative cell population growth on ethanol carbon source","type":"exact"},{"name":"cell population growth on ethanol carbon source abolished","type":"exact"}],"termid":"FYPO:0004338"}


id: PBO:0089034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane malate/succinate:proton symporter Mae1","termid":"PBO:0089034"}


id: PBO:0066071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinoic acid receptor responder 1","termid":"PBO:0066071"}


id: MONDO:0957595
data:
  {"annotated_genes":["SJAG_00328"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88049],"is_not":false,"summary":null,"term":"MONDO:0957595"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"bone marrow failure syndrome","termid":"MONDO:0000159"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00328":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"Ziegler-Huang syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1844409","OMIM:620501","UMLS:C5882688"],"termid":"MONDO:0957595","terms_by_termid":{"MONDO:0957595":null},"xrefs":{"Monarch":{"xref_id":"0957595"}}}


id: GO:0110134
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A biological process that results in the unequal transmission of alleles, haplotypes, or chromosomes from a parental genome to gametes. In the absence of meiotic drive, the two copies of each gene or chromosome in a diploid organism are transmitted to offspring with equal probability, whereas meiotic drive results in overrepresentation of the driving allele among the surviving products of meiosis.","definition_xrefs":["PMID:29499907","PMID:26920473","PMID:29322557","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive process","termid":"GO:0022414"}],"gene_count":0,"genotype_count":0,"in_subsets":["bp_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"meiotic drive","termid":"GO:0110134"}


id: PBO:0040118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat and SOCS box containing 5","termid":"PBO:0040118"}


id: GO:0042771
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage, and ends when the execution phase of apoptosis is triggered.","definition_xrefs":["GOC:go_curators","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intrinsic apoptotic signaling pathway in response to DNA damage","termid":"GO:0008630"},{"relation_name":"is_a","term_name":"intrinsic apoptotic signaling pathway by p53 class mediator","termid":"GO:0072332"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator","synonyms":[{"name":"DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis","type":"related"}],"termid":"GO:0042771"}


id: PBO:0069336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 596, pseudogene","termid":"PBO:0069336"}


id: PBO:0088105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Uridine nucleosidase (uridine-cytidine N-ribohydrolase); cleaves N-glycosidic bonds in nucleosides; involved in the pyrimidine salvage and nicotinamide riboside salvage pathways","termid":"PBO:0088105"}


id: PBO:0044542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-amino acid oxidase activator","termid":"PBO:0044542"}


id: PBO:0073988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 1 pseudogene 2","termid":"PBO:0073988"}


id: GO:0002483
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC protein complex. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of endogenous antigen","termid":"GO:0019883"},{"relation_name":"is_a","term_name":"antigen processing and presentation of peptide antigen","termid":"GO:0048002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of endogenous peptide antigen","synonyms":[{"name":"endogenous peptide antigen processing and presentation","type":"exact"}],"termid":"GO:0002483"}


id: PR:O94490
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC417.09c gene.","definition_xrefs":["UniProtKB:O94490","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C417.09c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC417.09c","synonyms":[{"name":"Spom972h-SPCC417.09c","type":"exact"}],"termid":"PR:O94490"}


id: MONDO:0035411
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"isolated congenital hypoglossia/aglossia","termid":"MONDO:0013003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"isolated congenital hypoglossia","secondary_identifiers":["GARD:22264","ICD10CM:Q38.3","Orphanet:563954"],"termid":"MONDO:0035411","xrefs":{"Monarch":{"xref_id":"0035411"}}}


id: MONDO:0800311
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital bilateral absence of vas deferens","termid":"MONDO:0018801"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vas deferens, congenital unilateral aplasia of","secondary_identifiers":["UMLS:C5393224","MEDGEN:1712847"],"synonyms":[{"name":"CUAVD","type":"exact"}],"termid":"MONDO:0800311","xrefs":{"Monarch":{"xref_id":"0800311"}}}


id: PBO:0088010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Type II HSP40 co-chaperone that interacts with the HSP70 protein Ssa1p; shuttles between cytosol and nucleus; mediates delivery of misfolded proteins into the nucleus for degradation; involved in proteasomal degradation of misfolded cytosolic proteins; protein abundance increases in response to DNA replication stress; polyQ aggregates sequester Sis1p and interfere with clearance of misfolded proteins; similar to bacterial DnaJ proteins and mammalian DnaJB1","termid":"PBO:0088010"}


id: PBO:0083218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps verified gene COQ2","termid":"PBO:0083218"}


id: PBO:0061885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"outer mitochondrial membrane lipid metabolism regulator OPA3","termid":"PBO:0061885"}


id: GO:0007384
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The specification of the characteristic structures of the thoracic segments following establishment of segment boundaries. Identity is considered to be the aggregate of characteristics by which a structure is recognized.","definition_xrefs":["ISBN:0878932437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of segmental identity, trunk","termid":"GO:0035292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of segmental identity, thorax","termid":"GO:0007384"}


id: PBO:0076715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor 21","termid":"PBO:0076715"}


id: PBO:0055085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2503","termid":"PBO:0055085"}


id: MONDO:1012353
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hyperornithinemia, hyperammonemia, and homocitrullinuria syndrome, non-human animal","termid":"MONDO:1011716"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperornithinemia, hyperammonemia, and homocitrullinuria syndrome, horse","secondary_identifiers":["OMIA:001290-9796"],"termid":"MONDO:1012353","xrefs":{"Monarch":{"xref_id":"1012353"}}}


id: FYPO:0006424
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cohesion between sister chromatids does not occur in centromeric regions during the first meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic sister chromatid cohesion","termid":"FYPO:0002092"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000641","FYPO:0005447","FYPO:0000631","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished meiotic sister chromatid cohesion at centromere during meiosis I","synonyms":[{"name":"abolished meiotic sister chromatid cohesion at centromere during first meiotic nuclear division","type":"exact"},{"name":"abolished meiotic sister chromatid cohesion, centromeric, during meiosis I","type":"exact"},{"name":"abolished sister chromatid cohesion at centromere during meiosis I","type":"exact"},{"name":"meiotic sister chromatid cohesion abolished at centromere during meiosis I","type":"exact"}],"termid":"FYPO:0006424"}


id: PBO:0090791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HECT-type ubiquitin-protein ligase E3 Pub3","termid":"PBO:0090791"}


id: GO:0005402
data:
  {"annotated_genes":["SJAG_03960","SJAG_04068","SJAG_03606","SJAG_03608","SJAG_00057","SJAG_04905","SJAG_02958","SJAG_03820"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78045,72640,74840,74945,76559,74956],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005351"},{"annotations":[119223],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005358"},{"annotations":[97669],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005364"},{"annotations":[77429],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008506"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + cation(out) = sugar(in) + cation(in).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate transmembrane transporter activity","termid":"GO:0015144"},{"relation_name":"is_a","term_name":"solute:monoatomic cation symporter activity","termid":"GO:0015294"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00057":null,"SJAG_02958":null,"SJAG_03606":null,"SJAG_03608":null,"SJAG_03820":null,"SJAG_03960":null,"SJAG_04068":null,"SJAG_04905":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"carbohydrate:monoatomic cation symporter activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"carbohydrate:cation symporter activity","type":"broad"},{"name":"cation/sugar symporter activity","type":"exact"},{"name":"cation:sugar symporter activity","type":"exact"},{"name":"sugar:cation symporter activity","type":"narrow"}],"termid":"GO:0005402","terms_by_termid":{"GO:0005351":null,"GO:0005358":null,"GO:0005364":null,"GO:0008506":null}}


id: GO:0044457
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of a cell septum, a structure composed of peptidoglycan and often chitin in addition to other materials. It usually forms perpendicular to the long axis of a cell or hypha and grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cell septum part (obsolete GO:0044457)","termid":"GO:0044457"}


id: PBO:0012534
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-results_in_morphogenesis_of","termid":"PBO:0012534"}


id: GO:0019114
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: catechol + O2 = a muconate.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete catechol dioxygenase activity (obsolete GO:0019114)","termid":"GO:0019114"}


id: PBO:0054413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1809","termid":"PBO:0054413"}


id: MONDO:0007904
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Median nodule of the upper lip is a minor trait of the lip transmitted in an autosomal dominant fashion.","definition_xrefs":["Orphanet:2699"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"median nodule of the upper lip","secondary_identifiers":["UMLS:C1835396","MEDGEN:372034","GARD:3440","OMIM:151630","SCTID:722034006"],"synonyms":[{"name":"LIP, MEDIAN NODULE of upper","type":"related"}],"termid":"MONDO:0007904","xrefs":{"Monarch":{"xref_id":"0007904"}}}


id: PBO:0061148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nicotinamide nucleotide adenylyltransferase 1","termid":"PBO:0061148"}


id: MONDO:0008522
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synovial chondromatosis, familial, with dwarfism","secondary_identifiers":["UMLS:C1861304","OMIM:186575","MESH:C566087","MEDGEN:348836"],"synonyms":[{"name":"synovial chondromatosis, familial with dwarfism","type":"related"},{"name":"synovial chondromatosis, familial, with dwarfism","type":"exact"}],"termid":"MONDO:0008522","xrefs":{"Monarch":{"xref_id":"0008522"}}}


id: SO:0001275
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A modified cytidine is a cytidine base feature which has been altered.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_RNA_base_feature","termid":"SO:0000250"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified_cytidine","synonyms":[{"name":"modified cytidine","type":"exact"}],"termid":"SO:0001275"}


id: PBO:0109295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MX1 antisense RNA 1","termid":"PBO:0109295"}


id: GO:0018458
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (1S,6R)-isopiperitenol + NAD+ = (6R)-isoperitenone + H+ + NADH.","definition_xrefs":["EC:1.1.1.223","RHEA:20860"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"isopiperitenol dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R03261","MetaCyc:ISOPIPERITENOL-DEHYDROGENASE-RXN","UM-BBD_reactionID:r0740"],"synonyms":[{"name":"(-)-trans-isopiperitenol:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0018458"}


id: GO:0051757
data:
  {"annotated_genes":["SJAG_04457","SJAG_02104"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95765,112158],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051755"}]},"cv_name":"biological_process","definition":"The process in which sister chromatids are physically detached from each other during meiosis.","definition_xrefs":["PMID:16325576","PMID:14730319","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic chromosome separation","termid":"GO:0051307"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02104":null,"SJAG_04457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0140013"],"is_obsolete":false,"name":"meiotic sister chromatid separation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"meiotic sister chromatid resolution","type":"exact"}],"termid":"GO:0051757","terms_by_termid":{"GO:0051755":null}}


id: GO:1904680
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a peptide from one side of a membrane to the other.","definition_xrefs":["GO_REF:0000070","GOC:TermGenie","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter activity","termid":"GO:0022857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"peptide transmembrane transporter activity","secondary_identifiers":["GO:0015197","GO:0015637","Reactome:R-HSA-1500817"],"synonyms":[{"name":"peptide transporter activity","type":"related"},{"name":"peptide uptake permease activity","type":"related"}],"termid":"GO:1904680"}


id: PBO:0110871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small endoribonuclease with 2 transmembrane domains, RNASEK, poorly chracterized protein implicated in endocytic pathway, vacuolar pricesses, protection against virus's","termid":"PBO:0110871"}


id: PBO:0050608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxysteroid 17-beta dehydrogenase 2","termid":"PBO:0050608"}


id: MOD:00604
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to 2x(2)H labeled monomethylated L-lysine.","definition_xrefs":["PubMed:15525938","Unimod:284"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"N6-methyl-L-lysine","termid":"MOD:00085"},{"relation_name":"is_a","term_name":"(2)H deuterium labeled residue","termid":"MOD:00839"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2x(2)H monomethylated L-lysine","synonyms":[{"name":"Deuterium Methylation of Lysine","type":"related"},{"name":"Methyl:2H(2)","type":"related"}],"termid":"MOD:00604"}


id: GO:0051070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of galactomannan, a polysaccharide composed of D-galactosyl and D-mannosyl. The mannosyl units form the backbone structure (a linear main chain) with the D-galactosyl as single side units.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide biosynthetic process","termid":"GO:0000271"},{"relation_name":"is_a","term_name":"galactomannan metabolic process","termid":"GO:0051069"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"galactomannan biosynthetic process","synonyms":[{"name":"galactomannan anabolism","type":"exact"},{"name":"galactomannan biosynthesis","type":"exact"},{"name":"galactomannan formation","type":"exact"},{"name":"galactomannan synthesis","type":"exact"}],"termid":"GO:0051070"}


id: PATO:0000784
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000784 excretory function value (obsolete PATO:0000784)","termid":"PATO:0000784"}


id: FYPO:0002828
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype in which the basal activity of a protein kinase is increased relative to normal. Basal protein kinase activity is the activity observed in the absence of a regulator. Abnormally elevated basal activity may or may not reach the levels observed in the normal activated state.","definition_xrefs":["PomBase:mah","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"constitutive catalytic activity","termid":"FYPO:0000683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000654","FYPO:0001320","FYPO:0005447","FYPO:0000652"],"is_obsolete":false,"name":"constitutive protein kinase activity","synonyms":[{"name":"constitutive protein kinase activity during mitotic cell cycle","type":"related"},{"name":"constitutive protein kinase activity during vegetative growth","type":"exact"},{"name":"constitutively active protein kinase","type":"related"}],"termid":"FYPO:0002828"}


id: GO:2000142
data:
  {"annotated_genes":["SJAG_05341","SJAG_03622","SJAG_02391","SJAG_02849","SJAG_03421","SJAG_00150","SJAG_04820","SJAG_04099","SJAG_01771","SJAG_02494","SJAG_03590","SJAG_04647","SJAG_03573","SJAG_00297","SJAG_01952","SJAG_00904","SJAG_00766","SJAG_05203","SJAG_02551","SJAG_01403","SJAG_04705","SJAG_00342","SJAG_00909"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[81353,91580],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045899"},{"annotations":[96338,92552,105606,116732,89304,97765,110720,100940,97283,110693,103887,105347,107644,65372,120964,108000,100588,108190,96223,92238,108327],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060261"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of DNA-templated transcription initiation.","definition_xrefs":["GOC:mah","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated transcription","termid":"GO:0006355"},{"relation_name":"regulates","term_name":"DNA-templated transcription initiation","termid":"GO:0006352"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00150":null,"SJAG_00297":null,"SJAG_00342":null,"SJAG_00766":null,"SJAG_00904":null,"SJAG_00909":null,"SJAG_01403":null,"SJAG_01771":null,"SJAG_01952":null,"SJAG_02391":null,"SJAG_02494":null,"SJAG_02551":null,"SJAG_02849":null,"SJAG_03421":null,"SJAG_03573":null,"SJAG_03590":null,"SJAG_03622":null,"SJAG_04099":null,"SJAG_04647":null,"SJAG_04705":null,"SJAG_04820":null,"SJAG_05203":null,"SJAG_05341":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"}],"interesting_parent_ids":["GO:0006351","GO:0008150","GO:0010467","GO:0006355"],"is_obsolete":false,"name":"regulation of DNA-templated transcription initiation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"regulation of DNA-dependent transcription, initiation","type":"exact"},{"name":"regulation of DNA-templated transcription, initiation","type":"exact"},{"name":"regulation of initiation of DNA-dependent transcription","type":"exact"},{"name":"regulation of transcription initiation, DNA-dependent","type":"exact"}],"termid":"GO:2000142","terms_by_termid":{"GO:0045899":null,"GO:0060261":null}}


id: PBO:0081037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCCH-type containing 13","termid":"PBO:0081037"}


id: GO:0046334
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of octopamine, 1-(p-hydroxyphenyl)-2-aminoethanol. The D enantiomer is about one-tenth as active as norepinephrine and is found in the salivary glands of Octopus and Eledone species.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound catabolic process","termid":"GO:0019336"},{"relation_name":"is_a","term_name":"biogenic amine catabolic process","termid":"GO:0042402"},{"relation_name":"is_a","term_name":"alcohol catabolic process","termid":"GO:0046164"},{"relation_name":"is_a","term_name":"octopamine metabolic process","termid":"GO:0046333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"octopamine catabolic process","synonyms":[{"name":"octopamine breakdown","type":"exact"},{"name":"octopamine catabolism","type":"exact"},{"name":"octopamine degradation","type":"exact"}],"termid":"GO:0046334"}


id: PBO:0060397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEDD4 binding protein 2 like 1","termid":"PBO:0060397"}


id: PBO:0060036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4 pseudogene 24","termid":"PBO:0060036"}


id: MONDO:0016760
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Microcephaly-microcornea syndrome, Seemanova type is characterized by microcephaly and brachycephaly, eye anomalies (microphthalmia, microcornea, congenital cataract), hypogenitalism, severe intellectual deficit, growth retardation and progressive spasticity. It has been described in two patients (a male and his sister's son). Both patients also presented with facial dysmorphism, including upslanting palpebral fissures, epicanthal folds, highly arched palate, microstomia, and retrognathia. This syndrome is transmitted as an X-linked trait.","definition_xrefs":["Orphanet:2528"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"disorder of visual system","termid":"MONDO:0024458"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microcephaly-microcornea syndrome, Seemanova type","secondary_identifiers":["icd11.foundation:1197077842","MESH:C537539","MEDGEN:419433","SCTID:715464002","UMLS:C2931524","GARD:3627"],"synonyms":[{"name":"Seemanova Lesny syndrome","type":"related"},{"name":"Seemanova-Lesny syndrome","type":"exact"},{"name":"X-linked microcephaly, microphthalmia, microcornea, congenital cataract, hypogenitalism, mental deficiency, growth retardation","type":"related"},{"name":"microcephaly microcornea syndrome Seemanova type","type":"related"}],"termid":"MONDO:0016760","xrefs":{"Monarch":{"xref_id":"0016760"}}}


id: GO:0030382
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of sperm mitochondria; the process in which they take on their characteristic morphology; they are flattened, elongated, and arranged circumferentially into a tight helical coil around the tail-dense fibers of the mature sperm.","definition_xrefs":["GOC:dph","GOC:mah","GOC:jl","PMID:8833144"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrion organization","termid":"GO:0007005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007005"],"is_obsolete":false,"name":"sperm mitochondrion organization","synonyms":[{"name":"sperm mitochondria organisation","type":"exact"},{"name":"sperm mitochondria organization and biogenesis","type":"related"},{"name":"sperm mitochondrion organization and biogenesis","type":"related"}],"termid":"GO:0030382"}


id: GO:0043258
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A laminin complex composed of alpha4, beta2 and gamma1 polypeptide chains.","definition_xrefs":["GOC:jl","PMID:10842354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laminin complex","termid":"GO:0043256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"laminin-9 complex","synonyms":[{"name":"laminin-421 complex","type":"exact"}],"termid":"GO:0043258"}


id: PBO:0090060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi localized protein, human HID1 ortholog 3, implicated in vesicle-mediated transport","termid":"PBO:0090060"}


id: PBO:0013022
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human DHODH","termid":"PBO:0013022"}


id: PBO:0056745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase 2A, methylcytidine","termid":"PBO:0056745"}


id: GO:0000376
data:
  {"annotated_genes":["SJAG_01517","SJAG_04738"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100620],"is_not":false,"summary":null,"term":"GO:0000376"},{"annotations":[99996],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000372"}]},"cv_name":"biological_process","definition":"Splicing of RNA via a series of two transesterification reactions with exogenous guanosine as the initiating nucleophile.","definition_xrefs":["PMID:11377794","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA splicing, via transesterification reactions","termid":"GO:0000375"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01517":null,"SJAG_04738":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"RNA splicing, via transesterification reactions with guanosine as nucleophile","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0000376","terms_by_termid":{"GO:0000372":null,"GO:0000376":null}}


id: GO:0061112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of bud outgrowth involved in lung branching.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental growth","termid":"GO:0048640"},{"relation_name":"is_a","term_name":"negative regulation of branching involved in lung morphogenesis","termid":"GO:0061048"},{"relation_name":"negatively_regulates","term_name":"bud outgrowth involved in lung branching","termid":"GO:0060447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of bud outgrowth involved in lung branching","termid":"GO:0061112"}


id: GO:0097476
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a spinal cord motor neuron from one site to another. A spinal cord motor neuron is a motor neuron that passes from the spinal cord toward or to a muscle and conducts an impulse that causes movement.","definition_xrefs":["GOC:yaf","CL:0011001","PMID:20711475"],"direct_ancestors":[{"relation_name":"is_a","term_name":"motor neuron migration","termid":"GO:0097475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spinal cord motor neuron migration","termid":"GO:0097476"}


id: PBO:0051411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable 1-47","termid":"PBO:0051411"}


id: GO:0019883
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses antigen (peptide or lipid) of endogenous origin on its cell surface in association with an MHC protein complex.","definition_xrefs":["PMID:15928678","GOC:add","ISBN:0781735149","PMID:15771591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation","termid":"GO:0019882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of endogenous antigen","synonyms":[{"name":"antigen presentation, endogenous antigen","type":"exact"}],"termid":"GO:0019883"}


id: PBO:0088055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-like protein with similarity to mammalian NEDD8; conjugation (neddylation) substrates include the cullins Cdc53p, Rtt101p, and Cul3p; activated by Ula1p and Uba3p (E1 enzyme pair); conjugation mediated by Ubc12p (E2 enzyme)","termid":"PBO:0088055"}


id: GO:0071934
data:
  {"annotated_genes":["SJAG_02962","SJAG_00835","SJAG_03652","SJAG_04673"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92015,92016],"is_not":false,"summary":null,"term":"GO:0071934"},{"annotations":[105570],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990545"},{"annotations":[102602],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140125"}]},"cv_name":"biological_process","definition":"The process in which thiamine is transported across a membrane. Thiamine is vitamin B1, a water soluble vitamin present in fresh vegetables and meats, especially liver.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiamine transport","termid":"GO:0015888"},{"relation_name":"is_a","term_name":"vitamin transmembrane transport","termid":"GO:0035461"},{"relation_name":"is_a","term_name":"azole transmembrane transport","termid":"GO:0045117"},{"relation_name":"is_a","term_name":"pyrimidine-containing compound transmembrane transport","termid":"GO:0072531"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00835":null,"SJAG_02962":null,"SJAG_03652":null,"SJAG_04673":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"thiamine transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"thiamin transmembrane transport","type":"exact"},{"name":"thiamine membrane transport","type":"exact"},{"name":"vitamin B1 transmembrane transport","type":"exact"}],"termid":"GO:0071934","terms_by_termid":{"GO:0071934":null,"GO:0140125":null,"GO:1990545":null}}


id: GO:0015116
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  {"annotated_genes":["SJAG_00671","SJAG_02463","SJAG_01941"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75645,90279],"is_not":false,"summary":null,"term":"GO:0015116"},{"annotations":[67079],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008271"}]},"cv_name":"molecular_function","definition":"Enables the transfer of sulfate ions, SO4(2-), from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transmembrane transporter activity","termid":"GO:0015103"},{"relation_name":"is_a","term_name":"sulfur compound transmembrane transporter activity","termid":"GO:1901682"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00671":null,"SJAG_01941":null,"SJAG_02463":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"sulfate transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-8875871","Reactome:R-HSA-3560789","Reactome:R-HSA-427555"],"synonyms":[{"name":"sulfate permease activity","type":"related"},{"name":"sulphate transporter activity","type":"exact"}],"termid":"GO:0015116","terms_by_termid":{"GO:0008271":null,"GO:0015116":null}}


id: PBO:0050721
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family D (Hsp60) member 1 pseudogene 7","termid":"PBO:0050721"}


id: MONDO:0011493
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Stickler syndrome is an inherited vitreoretinopathy characterized by the association of ocular signs with more or less complete forms of Pierre-Robin sequence, bone disorders, and sensorineural deafness (10% of cases). Stickler syndrome type 2 is caused by mutations in the COL11A1 gene (1p21).","definition_xrefs":["Orphanet:828"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Stickler syndrome","termid":"MONDO:0019354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005497"],"is_obsolete":false,"name":"Stickler syndrome type 2","secondary_identifiers":["icd11.foundation:1652024415","UMLS:C1858084","MESH:C537493","DOID:0080675","OMIM:604841","Orphanet:90654","GARD:5020","MEDGEN:347615","NCIT:C74985"],"synonyms":[{"name":"COL11A1 Stickler syndrome","type":"exact"},{"name":"STICKLER syndrome, type II","type":"related"},{"name":"STL 2","type":"related"},{"name":"STL2","type":"related"},{"name":"Stickler syndrome caused by mutation in COL11A1","type":"exact"},{"name":"Stickler syndrome type II","type":"exact"},{"name":"Stickler syndrome, beaded vitreous type","type":"related"},{"name":"Stickler syndrome, type 2","type":"related"},{"name":"Stickler syndrome, vitreous type 2","type":"related"}],"termid":"MONDO:0011493","xrefs":{"Monarch":{"xref_id":"0011493"}}}


id: GO:1904153
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of retrograde protein transport, ER to cytosol.","definition_xrefs":["PMID:18555783","GOC:TermGenie","GO_REF:0000058","GOC:bf","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein exit from endoplasmic reticulum","termid":"GO:0070862"},{"relation_name":"is_a","term_name":"regulation of retrograde protein transport, ER to cytosol","termid":"GO:1904152"},{"relation_name":"negatively_regulates","term_name":"retrograde protein transport, ER to cytosol","termid":"GO:0030970"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of retrograde protein transport, ER to cytosol","synonyms":[{"name":"down regulation of protein dislocation from ER","type":"exact"},{"name":"down regulation of retrograde protein transport, ER to cytosol","type":"exact"},{"name":"down regulation of retrograde protein transport, endoplasmic reticulum to cytosol","type":"exact"},{"name":"down-regulation of protein dislocation from ER","type":"exact"},{"name":"down-regulation of retrograde protein transport, ER to cytosol","type":"exact"},{"name":"down-regulation of retrograde protein transport, endoplasmic reticulum to cytosol","type":"exact"},{"name":"downregulation of protein dislocation from ER","type":"exact"},{"name":"downregulation of retrograde protein transport, ER to cytosol","type":"exact"},{"name":"downregulation of retrograde protein transport, endoplasmic reticulum to cytosol","type":"exact"},{"name":"inhibition of protein dislocation from ER","type":"narrow"},{"name":"inhibition of retrograde protein transport, ER to cytosol","type":"narrow"},{"name":"inhibition of retrograde protein transport, endoplasmic reticulum to cytosol","type":"narrow"},{"name":"negative regulation of protein dislocation from ER","type":"exact"},{"name":"negative regulation of protein retrotranslocation from ER","type":"exact"},{"name":"negative regulation of retrograde protein transport, endoplasmic reticulum to cytosol","type":"exact"}],"termid":"GO:1904153"}


id: MONDO:0010384
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hypospadias","termid":"MONDO:0005345"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypospadias 1, X-linked","secondary_identifiers":["MEDGEN:394735","OMIM:300633","GARD:18185","MESH:C567482","UMLS:C2678098"],"synonyms":[{"name":"HYSP1","type":"related"},{"name":"hypospadias 1, X-linked","type":"exact"},{"name":"hypospadias 1, X-linked, X-linked recessive","type":"exact"}],"termid":"MONDO:0010384","xrefs":{"Monarch":{"xref_id":"0010384"}}}


id: MOD:00178
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  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-(ADP-ribosyl)-L-cysteine.","definition_xrefs":["DeltaMass:0","Unimod:213#C","RESID:AA0169","PubMed:15842200","PubMed:3863818"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenosine diphosphoribosyl (ADP-ribosyl) modified residue","termid":"MOD:00752"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"S-(ADP-ribosyl)-L-cysteine","synonyms":[{"name":"(R)-2-amino-3-([adenosine 5'-(trihydrogen diphosphate) 5'->5'-ester with alpha-D-ribofuranosyl]sulfanyl)propanoic acid","type":"exact"},{"name":"ADP Ribose addition","type":"related"},{"name":"ADP-Ribosyl","type":"related"},{"name":"ADPRibCys","type":"exact"},{"name":"MOD_RES ADP-ribosylcysteine","type":"exact"},{"name":"S-(ADP-ribosyl)- (on Cysteine)","type":"exact"},{"name":"S-(ADP-ribosyl)-L-cysteine","type":"exact"},{"name":"S-L-cysteine alpha-D-ribofuranoside 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)","type":"exact"},{"name":"S-alpha-D-ribofuranosyl-L-cysteine 5'->5'-ester with adenosine 5'-(trihydrogen diphosphate)","type":"exact"}],"termid":"MOD:00178"}


id: PBO:0049203
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate ionotropic receptor kainate type subunit 3","termid":"PBO:0049203"}


id: GO:0034377
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The non-covalent aggregation and arrangement of proteins and lipids to form a plasma lipoprotein particle.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-lipid complex assembly","termid":"GO:0065005"},{"relation_name":"is_a","term_name":"plasma lipoprotein particle organization","termid":"GO:0071827"},{"relation_name":"part_of","term_name":"regulation of plasma lipoprotein particle levels","termid":"GO:0097006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"plasma lipoprotein particle assembly","secondary_identifiers":["Reactome:R-HSA-8963898"],"termid":"GO:0034377"}


id: GO:0140455
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  {"annotated_genes":["SJAG_00552","SJAG_00436","SJAG_00173","SJAG_03794","SJAG_01556","SJAG_02419","SJAG_02341"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106947,120611],"is_not":false,"summary":null,"term":"GO:0140455"},{"annotations":[109968,111720,111613,115615,112309],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071629"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of misfolded proteins in the cytoplasm, which are either targeted to cytoplasmic proteasomes for degradation or protected by chaperones to shield thermosensitive proteins from degradation until conditions allow disaggregation and refolding.","definition_xrefs":["PMID:32075773"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein quality control for misfolded or incompletely synthesized proteins","termid":"GO:0006515"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00173":null,"SJAG_00436":null,"SJAG_00552":null,"SJAG_01556":null,"SJAG_02341":null,"SJAG_02419":null,"SJAG_03794":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"cytoplasm protein quality control","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140455","terms_by_termid":{"GO:0071629":null,"GO:0140455":null}}


id: GO:0052017
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of xylan within the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete catabolism by symbiont of host xylan (obsolete GO:0052017)","synonyms":[{"name":"catabolism by organism of host xylan","type":"exact"}],"termid":"GO:0052017"}


id: GO:1905443
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of clathrin coat assembly.","definition_xrefs":["GO_REF:0000058","PMID:15533940","GOC:PARL","GOC:TermGenie","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex assembly","termid":"GO:0043254"},{"relation_name":"regulates","term_name":"clathrin coat assembly","termid":"GO:0048268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"regulation of clathrin coat assembly","synonyms":[{"name":"regulation of clathrin cage assembly","type":"exact"}],"termid":"GO:1905443"}


id: PBO:0043531
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COBL pseudogene 1","termid":"PBO:0043531"}


id: MONDO:0003301
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cutaneous leiomyoma arising from the dartos muscle of the scrotum or labia majora.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"benign reproductive system neoplasm","termid":"MONDO:0000383"},{"relation_name":"is_a","term_name":"leiomyoma cutis","termid":"MONDO:0003291"},{"relation_name":"is_a","term_name":"connective tissue neoplasm","termid":"MONDO:0021581"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"dartoic leiomyoma","secondary_identifiers":["ICD9:215.9","SCTID:254770007","NCIT:C4483","MEDGEN:91078","DOID:5147","UMLS:C0346066"],"synonyms":[{"name":"dartoic leiomyoma","type":"exact"},{"name":"dartoic myoma","type":"exact"},{"name":"dartos muscle leiomyoma","type":"exact"},{"name":"leiomyoma of dartos muscle","type":"exact"}],"termid":"MONDO:0003301","xrefs":{"Monarch":{"xref_id":"0003301"}}}


id: MONDO:0024880
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant tumor that has spread from its original (primary) site of growth to another site close to or distant from the primary site.","definition_xrefs":["NCIT:C36263"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary malignant neoplasm","termid":"MONDO:0024881"},{"relation_name":"is_a","term_name":"metastatic neoplasm","termid":"MONDO:0024883"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"metastatic malignant neoplasm","secondary_identifiers":["MEDGEN:422475","UMLS:C2939419"],"synonyms":[{"name":"malignant metastatic neoplasm","type":"exact"},{"name":"metastatic cancer","type":"exact"},{"name":"metastatic malignant neoplasm","type":"exact"},{"name":"metastatic neoplasm, malignant","type":"exact"}],"termid":"MONDO:0024880","xrefs":{"Monarch":{"xref_id":"0024880"}}}


id: MONDO:0015356
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inherited predisposition toward getting a tumor.","definition_xrefs":["NCIT:C3266"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"},{"relation_name":"is_a","term_name":"neoplastic 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neoplastic syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:699346009","GARD:19921","MEDGEN:14326","MESH:D009386","UMLS:C0027672","Orphanet:140162"],"synonyms":[{"name":"cancer syndrome, hereditary","type":"exact"},{"name":"cancer syndromes, hereditary","type":"exact"},{"name":"familial neoplastic syndrome","type":"exact"},{"name":"familial tumor syndrome","type":"exact"},{"name":"familial tumour syndrome","type":"exact"},{"name":"hereditary cancer syndrome","type":"exact"},{"name":"hereditary cancer syndromes","type":"exact"},{"name":"hereditary neoplastic syndrome","type":"exact"},{"name":"hereditary neoplastic syndromes","type":"exact"},{"name":"hereditary tumor syndrome","type":"exact"},{"name":"hereditary tumour syndrome","type":"exact"},{"name":"inherited cancer syndrome","type":"exact"},{"name":"inherited cancer-predisposing syndrome","type":"exact"},{"name":"neoplastic syndrome, hereditary","type":"exact"},{"name":"syndrome, hereditary cancer","type":"exact"},{"name":"syndrome, hereditary neoplastic","type":"exact"},{"name":"syndromes, hereditary cancer","type":"exact"},{"name":"syndromes, hereditary neoplastic","type":"exact"}],"termid":"MONDO:0015356","terms_by_termid":{"MONDO:0007356":null,"MONDO:0007485":null,"MONDO:0007681":null,"MONDO:0007767":null,"MONDO:0007768":null,"MONDO:0007888":null,"MONDO:0008018":null,"MONDO:0008612":null,"MONDO:0009136":null,"MONDO:0009759":null,"MONDO:0010159":null,"MONDO:0010518":null,"MONDO:0010584":null,"MONDO:0011740":null,"MONDO:0012041":null,"MONDO:0012249":null,"MONDO:0012252":null,"MONDO:0012953":null,"MONDO:0013092":null,"MONDO:0013108":null,"MONDO:0013199":null,"MONDO:0013224":null,"MONDO:0013510":null,"MONDO:0013519":null,"MONDO:0013520":null,"MONDO:0013521":null,"MONDO:0013582":null,"MONDO:0013699":null,"MONDO:0013710":null,"MONDO:0013806":null,"MONDO:0014038":null,"MONDO:0014056":null,"MONDO:0014368":null,"MONDO:0014600":null,"MONDO:0014630":null,"MONDO:0014690":null,"MONDO:0016368":null,"MONDO:0016369":null,"MONDO:0024498":null,"MONDO:0024517":null,"MONDO:0031057":null,"MONDO:0044300":null,"MONDO:0859346":null,"MONDO:0859575":null,"MONDO:0859576":null,"MONDO:0958013":null,"MONDO:0970950":null},"xrefs":{"Monarch":{"xref_id":"0015356"}}}


id: MONDO:0015984
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Rare genetic immune system disease.","gene_count":0,"genotype_count":0,"name":"obsolete rare genetic immune disease (obsolete MONDO:0015984)","secondary_identifiers":["Orphanet:183770"],"synonyms":[{"name":"rare genetic immune system disease","type":"exact"}],"termid":"MONDO:0015984","xrefs":{"Monarch":{"xref_id":"0015984"}}}


id: GO:0018157
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of a peptidyl serine-peptidyl glycine, or peptidyl cysteine-peptidyl glycine cross-link by the condensation of the serine hydroxyl or cysteine thiol with the carbonyl of the preceding residue and alpha-beta dehydrogenation.","definition_xrefs":["GOC:jsg"],"gene_count":0,"genotype_count":0,"name":"obsolete peptide cross-linking via an oxazole or thiazole (obsolete GO:0018157)","synonyms":[{"name":"peptide heterocycle biosynthesis","type":"related"},{"name":"peptide heterocycle biosynthetic process","type":"related"},{"name":"peptide heterocycle formation","type":"related"},{"name":"peptide heterocycle synthesis","type":"related"}],"termid":"GO:0018157"}


id: PBO:0055491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2925","termid":"PBO:0055491"}


id: MONDO:0800386
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A poisoning that is caused by exposure to organophosphate.","definition_xrefs":["MONDO:patterns/patterns/poisoning"],"direct_ancestors":[{"relation_name":"is_a","term_name":"poisoning","termid":"MONDO:0029000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"organophosphate poisoning","synonyms":[{"name":"insecticide poisoning","type":"exact"},{"name":"organophosphate exposure","type":"exact"}],"termid":"MONDO:0800386","xrefs":{"Monarch":{"xref_id":"0800386"}}}


id: FYPO:0002651
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the attachment of spindle microtubules to the kinetochore during a mitotic or meiotic nuclear division results in the connection of a single kinetochore to both spindle poles.","definition_xrefs":["PMID:21306900","PMID:17426725"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal attachment of spindle microtubules to kinetochore","termid":"FYPO:0000325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"merotelic kinetochore attachment","synonyms":[{"name":"merotelic attachment of spindle microtubules to kinetochore","type":"exact"}],"termid":"FYPO:0002651"}


id: MONDO:0002830
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete ovary transitional cell carcinoma (obsolete MONDO:0002830)","termid":"MONDO:0002830","xrefs":{"Monarch":{"xref_id":"0002830"}}}


id: FYPO:0006041
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of mitotic metaphase chromosome recapture is decreased.","definition_xrefs":["PMID:27146110","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic metaphase chromosome recapture","termid":"FYPO:0005362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000337","FYPO:0000138","FYPO:0000631","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0000641"],"is_obsolete":false,"name":"decreased rate of mitotic metaphase chromosome recapture","synonyms":[{"name":"decreased rate of chromosome recapture during mitosis","type":"exact"},{"name":"decreased rate of chromosome recapture during mitotic metaphase","type":"exact"},{"name":"decreased rate of kinetochore retrieval in mitotic metaphase","type":"exact"},{"name":"decreased rate of metaphase chromosome recapture during mitotic cell cycle","type":"related"},{"name":"decreased rate of mitotic kinetochore retrieval","type":"exact"},{"name":"decreased rate of mitotic metaphase chromosome recapture during vegetative growth","type":"exact"},{"name":"decreased rate of mitotic metaphase chromosome retrieval to the spindle pole body","type":"exact"},{"name":"decreased rate of mitotic sister kinetochore recapture","type":"exact"},{"name":"increased time to mitotic metaphase chromosome recapture","type":"related"},{"name":"reduced rate of mitotic metaphase chromosome recapture","type":"exact"}],"termid":"FYPO:0006041"}


id: PBO:0076779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TEA domain transcription factor 2","termid":"PBO:0076779"}


id: GO:0018034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a C-terminal peptidyl-alanine amide by hydrolysis and oxidation of an interior Ala-Gly peptide in a secreted protein.","definition_xrefs":["RESID:AA0081"],"gene_count":0,"genotype_count":0,"name":"obsolete C-terminal peptidyl-alanine amidation (obsolete GO:0018034)","termid":"GO:0018034"}


id: PBO:0004852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucosyltransferase Alg6 (predicted)","termid":"PBO:0004852"}


id: PBO:0031912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AP endonuclease, minor transcript isoform Apn1","termid":"PBO:0031912"}


id: GO:0046092
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving deoxycytidine, 2-deoxyribosylcytosine, one of the four major nucleosides of DNA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside metabolic process","termid":"GO:0046125"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"deoxycytidine metabolic process","synonyms":[{"name":"deoxycytidine metabolism","type":"exact"}],"termid":"GO:0046092"}


id: GO:0052215
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism in the environment of a second organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete energy taxis in environment of other organism involved in symbiotic interaction (obsolete GO:0052215)","synonyms":[{"name":"energy taxis in environment of other organism during symbiotic interaction","type":"related"},{"name":"energy taxis in response to environment of other organism","type":"exact"}],"termid":"GO:0052215"}


id: FYPO:0004361
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which haploid cells undergo meiotic nuclear division and attempt to sporulate when the cells are subject to nitrogen starvation. Haploid meiosis often results in the formation of a structure that resembles an azygotic ascus. Spores produced from a haploid cell have poor viability and appear to contain only 1/2C DNA on average.","definition_xrefs":["DOI:10.1007/BF00332932","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic cell cycle entry and sporulation in haploid","termid":"FYPO:0001886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"meiotic cell cycle entry and sporulation in haploid during nitrogen starvation","synonyms":[{"name":"haploid meiosis during nitrogen starvation","type":"related"},{"name":"haploid sporulation during nitrogen starvation","type":"related"},{"name":"meiosis in haploid during nitrogen starvation","type":"related"},{"name":"meiotic nuclear division and sporulation in haploid during nitrogen starvation","type":"narrow"},{"name":"sporulation in haploid during nitrogen starvation","type":"related"}],"termid":"FYPO:0004361"}


id: SO:0001052
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0001052 nested_repeat (obsolete SO:0001052)","termid":"SO:0001052"}


id: GO:0015288
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of substances, sized less than 1000 Da, from one side of a membrane to the other. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria.","definition_xrefs":["PMID:10839820","TC:1.B.1.-.-","GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"wide pore channel activity","termid":"GO:0022829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"porin activity","secondary_identifiers":["Wikipedia:Porin_(protein)"],"synonyms":[{"name":"outer membrane exporter porin","type":"narrow"},{"name":"porin","type":"exact"}],"termid":"GO:0015288"}


id: PBO:0071411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 17","termid":"PBO:0071411"}


id: MONDO:0019940
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hypertrichosis-acromegaloid facial appearance syndrome (HAFF) is a very rare multiple congenital abnormality syndrome manifesting from birth with progressive hypertrichosis congenita terminalis (thick scalp hair extending onto the forehead with generalized increased body hair) associated with a typical acromegaloid facial appearance (thick eyebrows, prominent supraorbital ridges, broad nasal bridge, anteverted nares, long and large philtrum, and prominent mouth with full lips) appearing during childhood. HAFF seems to belong to a spectrum of phenotypes with the clinically overlapping acromegaloid facial appearance syndrome and hypertrichotic osteochondrodysplasia, CantC9 type.","definition_xrefs":["Orphanet:966"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"hypertrichosis","termid":"MONDO:0019280"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypertrichosis-acromegaloid facial appearance syndrome","secondary_identifiers":["SCTID:721837000","GARD:502"],"synonyms":[{"name":"acromegaloid facial appearance syndrome and hypertrichosis","type":"related"},{"name":"acromegaloid hypertrichosis syndrome","type":"related"},{"name":"haff","type":"exact"},{"name":"hypertrichosis-acromegaloid facial features syndrome","type":"exact"},{"name":"hypertrichosis-coarse face syndrome","type":"exact"}],"termid":"MONDO:0019940","xrefs":{"Monarch":{"xref_id":"0019940"}}}


id: PBO:0057549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 663b","termid":"PBO:0057549"}


id: PBO:0110161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA wybutosine biosynthesis protein Tyw3","termid":"PBO:0110161"}


id: PBO:0073135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC16 homolog A, endoplasmic reticulum export factor","termid":"PBO:0073135"}


id: GO:0002122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Aggressive behavior associated with attempts to flee from a threat.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aggressive behavior","termid":"GO:0002118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fear-induced aggressive behavior","synonyms":[{"name":"fear-induced aggression","type":"exact"}],"termid":"GO:0002122"}


id: GO:0071466
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a xenobiotic, a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.","definition_xrefs":["GOC:mah","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to xenobiotic stimulus","termid":"GO:0009410"},{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to xenobiotic stimulus","secondary_identifiers":["GO:0035690"],"synonyms":[{"name":"cellular response to drug","type":"related"}],"termid":"GO:0071466"}


id: GO:0050008
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: isopiperitenone = piperitenone.","definition_xrefs":["RHEA:21516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, transposing C=C bonds","termid":"GO:0016863"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"isopiperitenone delta-isomerase activity","secondary_identifiers":["KEGG_REACTION:R03782","MetaCyc:ISOPIPERITENONE-DELTA-ISOMERASE-RXN","EC:5.3.3.11"],"synonyms":[{"name":"isopiperitenone D-isomerase activity","type":"exact"},{"name":"isopiperitenone delta8-delta4-isomerase activity","type":"related"}],"termid":"GO:0050008"}


id: GO:0097563
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Set of two basal bodies found in Giardia species (trophozoite stage). It comprises the caudal and posteriolateral basal bodies located to the right of the left nucleus of the trophozoite when viewed dorsally.","definition_xrefs":["PMID:5961344","ISBN:9780124260207","GOC:giardia","PMID:16607022"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cell projection","termid":"GO:0042995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"left middle basal body pair","termid":"GO:0097563"}


id: PBO:0117424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zDHHC palmitoyltransferase 19","termid":"PBO:0117424"}


id: FYPO:0004613
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the spindle pole body is not attached to any interphase cytoplasmic microtubules; as a result, the microtubules are not connected to the nucleus. Normally, the spindle pole body is attached to at least one cytoplasmic microtubule bundle.","definition_xrefs":["PomBase:mah","PMID:15772152","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle pole body morphology","termid":"FYPO:0001474"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished microtubule attachment to spindle pole body","synonyms":[{"name":"SPB detached from cytoplasmic microtubules","type":"exact"},{"name":"abolished microtubule attachment to nucleus","type":"broad"},{"name":"abolished microtubule attachment to spindle pole body during mitotic cell cycle","type":"related"},{"name":"abolished microtubule attachment to spindle pole body during vegetative growth","type":"exact"},{"name":"cytoplasmic microtubules absent from mitotic spindle pole body","type":"exact"},{"name":"cytoplasmic microtubules detached from spindle pole body","type":"exact"},{"name":"interphase microtubules detached from nucleus","type":"exact"},{"name":"interphase microtubules detached from spindle pole body","type":"exact"},{"name":"spindle pole body detached from cytoplasmic microtubules","type":"exact"}],"termid":"FYPO:0004613"}


id: GO:0015132
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of prostaglandins from one side of a membrane to the other. A prostaglandin is any of a group of biologically active metabolites which contain a cyclopentane ring due to the formation of a bond between two carbons of a fatty acid. They have a wide range of biological activities.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"icosanoid transmembrane transporter activity","termid":"GO:0071714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"prostaglandin transmembrane transporter activity","secondary_identifiers":["Reactome:R-HSA-879528","Reactome:R-HSA-5661188","Reactome:R-HSA-9032327"],"synonyms":[{"name":"prostaglandin/thromboxane transporter activity","type":"broad"}],"termid":"GO:0015132"}


id: FYPO:0006892
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which inositol hexakisphosphate kinase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal inositol hexakisphosphate kinase activity","termid":"FYPO:0006891"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0000654","FYPO:0000661","FYPO:0001985"],"is_obsolete":false,"name":"abolished inositol hexakisphosphate kinase activity","synonyms":[{"name":"inositol hexakisphosphate kinase activity abolished","type":"exact"}],"termid":"FYPO:0006892"}


id: MONDO:0003387
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A morphologic variant of urethral adenocarcinoma characterized by the presence of tubulocystic or papillary structures lined with clear cuboidal or hobnail cells.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urethra adenocarcinoma","termid":"MONDO:0003200"},{"relation_name":"is_a","term_name":"clear cell adenocarcinoma","termid":"MONDO:0005004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"urethra clear cell adenocarcinoma","secondary_identifiers":["DOID:5307","UMLS:C1336886","MEDGEN:277846","NCIT:C6172"],"synonyms":[{"name":"clear cell adenocarcinoma of the urethra","type":"exact"},{"name":"clear cell adenocarcinoma of urethra","type":"exact"},{"name":"urethra clear cell adenocarcinoma","type":"exact"},{"name":"urethral clear cell adenocarcinoma","type":"exact"}],"termid":"MONDO:0003387","xrefs":{"Monarch":{"xref_id":"0003387"}}}


id: MONDO:0006670
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the membranes surrounding the brain and spinal cord due to a bacterial infection.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"infectious meningitis","termid":"MONDO:0004796"},{"relation_name":"is_a","term_name":"bacterial infectious disease","termid":"MONDO:0005113"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bacterial meningitis","secondary_identifiers":["UMLS:C0085437","SCTID:95883001","ICD9:320.89","GARD:5881","icd11.foundation:684930313","ICD9:320","EFO:1000831","ICD9:320.7","ICD9:320.9","MedDRA:10004049","MEDGEN:39048","MESH:D016920","DOID:9470","NCIT:C118297"],"synonyms":[{"name":"Bacteria caused infectious meningitis","type":"exact"},{"name":"Bacteria infectious meningitis","type":"exact"},{"name":"meningitis, bacterial","type":"related"}],"termid":"MONDO:0006670","xrefs":{"Monarch":{"xref_id":"0006670"}}}


id: PBO:0045348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichol kinase","termid":"PBO:0045348"}


id: FYECO:0000227
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"A temperature at which a conditional (heat- or cold-sensitive) allele grows, usually at a normal or nearly normal rate.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping experimental environment","termid":"FYECO:0000132"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"permissive temperature","termid":"FYECO:0000227"}


id: GO:0030335
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell migration.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell migration","termid":"GO:0030334"},{"relation_name":"is_a","term_name":"positive regulation of cell motility","termid":"GO:2000147"},{"relation_name":"positively_regulates","term_name":"cell migration","termid":"GO:0016477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell migration","synonyms":[{"name":"activation of cell migration","type":"narrow"},{"name":"stimulation of cell migration","type":"narrow"},{"name":"up regulation of cell migration","type":"exact"},{"name":"up-regulation of cell migration","type":"exact"},{"name":"upregulation of cell migration","type":"exact"}],"termid":"GO:0030335"}


id: PBO:0005406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiosulfate sulfurtransferase, involved in tRNA wobble position thiolation Tum1 (predicted)","termid":"PBO:0005406"}


id: GO:1901077
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of relaxation of muscle.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle system process","termid":"GO:0090257"},{"relation_name":"regulates","term_name":"relaxation of muscle","termid":"GO:0090075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of relaxation of muscle","termid":"GO:1901077"}


id: MONDO:0006467
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rapidly growing primary carcinoma of the thyroid gland composed of malignant squamous cells. The clinical course is usually aggressive.","definition_xrefs":["NCIT:C46008"],"direct_ancestors":[{"relation_name":"is_a","term_name":"squamous cell carcinoma","termid":"MONDO:0005096"},{"relation_name":"is_a","term_name":"thyroid gland carcinoma","termid":"MONDO:0015075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"thyroid gland squamous cell carcinoma","secondary_identifiers":["MEDGEN:328050","UMLS:C1710177","EFO:1000594"],"synonyms":[{"name":"squamous cell thyroid gland carcinoma","type":"exact"},{"name":"thyroid gland squamous cell carcinoma","type":"exact"}],"termid":"MONDO:0006467","xrefs":{"Monarch":{"xref_id":"0006467"}}}


id: GO:0052753
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: propan-2-ol + coenzyme F420 = acetone + reduced coenzyme F420.","definition_xrefs":["PMID:1879431","GOC:mengo_curators","PMID:8706724","PMID:15016352"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"propan-2-ol:coenzyme F420 oxidoreductase activity","synonyms":[{"name":"F420-dependent propan-2-ol dehydrogenase activity","type":"exact"},{"name":"F420-dependent secondary alcohol dehydrogenase activity","type":"broad"},{"name":"isopropanol:coenzyme F420 oxidoreductase activity","type":"exact"}],"termid":"GO:0052753"}


id: PBO:0000732
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.2.1.16","termid":"PBO:0000732"}


id: FYPO:0001923
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein dephosphorylation is normal (i.e. indistinguishable from wild type) during the G2/M phase transition of the mitotic cell cycle. Protein dephosphorylation is the removal of a phosphate group from a protein amino acid.","definition_xrefs":["GO:0006470","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein dephosphorylation during vegetative growth","termid":"FYPO:0001922"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal protein dephosphorylation during mitotic G2/M transition","synonyms":[{"name":"normal protein dephosphorylation during G2/M phase transition","type":"exact"},{"name":"normal protein dephosphorylation during G2/M transition during vegetative growth","type":"exact"},{"name":"normal protein dephosphorylation during G2/M transition of mitotic cell cycle","type":"exact"},{"name":"normal protein/peptide dephosphorylation during mitotic G2/M transition","type":"exact"}],"termid":"FYPO:0001923"}


id: PBO:0043269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"claudin domain containing 2","termid":"PBO:0043269"}


id: MONDO:0001202
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"prostate disorder","termid":"MONDO:0003105"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostatic cyst","secondary_identifiers":["DOID:11133","ICD9:600.3","ICD10CM:N42.83","MEDGEN:731233","SCTID:409658007","UMLS:C1443972","ICD9:599.89"],"synonyms":[{"name":"cyst of prostate","type":"exact"}],"termid":"MONDO:0001202","xrefs":{"Monarch":{"xref_id":"0001202"}}}


id: PBO:0069835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1121, pseudogene","termid":"PBO:0069835"}


id: GO:0002518
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a lymphocyte to cross a high endothelial venule in response to an external stimulus.","definition_xrefs":["PMID:15122201","ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte chemotaxis","termid":"GO:0048247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lymphocyte chemotaxis across high endothelial venule","termid":"GO:0002518"}


id: PBO:0028287
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_response_to_mitotic_G2_DNA_damage_checkpoint_signaling","termid":"PBO:0028287"}


id: PBO:0079485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TXN2 pseudogene 1","termid":"PBO:0079485"}


id: PBO:0114274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin family protein (FoldSeek), possible PF15874 family (Pfam-N)","termid":"PBO:0114274"}


id: PBO:0082888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cyclin (Bur2p)-dependent protein kinase; subunit of the CDK-cyclin BUR kinase complex with Bur2p; regulates Set2p-dependent H3K36 trimethylation; regulates transcriptional elongation through the phosphorylation of the carboxy-terminal domain (CTD) of Rpo21p; stimulates recruitment of the PAF complex through Spt5p CTD phosphorylation; recruits Spt6p to the CTD at the onset of transcription; regulates telomere elongation; regulated by Cak1p; similar to metazoan CDK9 proteins","termid":"PBO:0082888"}


id: MONDO:1011430
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Neuronal ceroid lipofuscinosis that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal storage disease, non-human animal","termid":"MONDO:1010171"},{"relation_name":"is_a","term_name":"neurodegenerative disease, non-human animal","termid":"MONDO:1012953"},{"relation_name":"is_a","term_name":"hereditary neurological disease, non-human animal","termid":"MONDO:1012972"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuronal ceroid lipofuscinosis, non-human animal","secondary_identifiers":["OMIA:000181"],"termid":"MONDO:1011430","xrefs":{"Monarch":{"xref_id":"1011430"}}}


id: PBO:0039221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldo-keto reductase family 7 member A2","termid":"PBO:0039221"}


id: GO:0032068
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex consisting of two proteins which acts as an endonuclease in DNA sequences containing a specific modified recognition site. Modifications may include methylation, hydroxymethylation, and glucosyl-hydroxymethylation.","definition_xrefs":["PMID:12654995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endodeoxyribonuclease complex","termid":"GO:1905347"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"type IV site-specific deoxyribonuclease complex","synonyms":[{"name":"type IV restriction enzyme complex","type":"exact"}],"termid":"GO:0032068"}


id: PBO:0004567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-oxoacyl-[acyl-carrier-protein]-synthase condensing enzyme (predicted)","termid":"PBO:0004567"}


id: MONDO:0006955
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autoinflammatory condition following an infection with Group A Beta Hemolytic Streptococcus (GABHS), in which the heart is attacked by antibodies formed in reaction to a recent GABHS infection. Chief anatomic changes of the valve include leaflet thickening, commissural fusion, and shortening and thickening of the tendinous cords, all of which can result in valvular dysfunction.","definition_xrefs":["NCIT:C34882"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"heart valve disorder","termid":"MONDO:0002869"},{"relation_name":"is_a","term_name":"heart disorder","termid":"MONDO:0005267"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"rheumatic heart disease","secondary_identifiers":["DOID:0050827","ICD9:398.90","ICD9:398.99","EFO:1001161","UMLS:C0035439","MedDRA:10062110","SCTID:23685000","MEDGEN:20565","MESH:D012214"],"synonyms":[{"name":"RHD","type":"exact"},{"name":"disease, rheumatic heart","type":"exact"},{"name":"heart disease, rheumatic","type":"exact"},{"name":"rheumatic carditis","type":"exact"}],"termid":"MONDO:0006955","xrefs":{"Monarch":{"xref_id":"0006955"}}}


id: PBO:0049981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIKESHI pseudogene 2","termid":"PBO:0049981"}


id: FYPO:0006873
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found in the cell cortex at one or both cell tips is observed there.","definition_xrefs":["PMID:17895368","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein mislocalized to cytoplasm during vegetative growth","termid":"FYPO:0000783"},{"relation_name":"is_a","term_name":"protein mislocalized to cell tip","termid":"FYPO:0003527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"protein mislocalized to cell cortex of cell tip","synonyms":[{"name":"ectopic protein localization to cell cortex of cell tip","type":"exact"},{"name":"protein mislocalised to cell cortex of cell tip","type":"exact"},{"name":"protein mislocalised to cell cortex of cell tip during vegetative growth","type":"exact"},{"name":"protein mislocalized to cell cortex of cell end","type":"exact"},{"name":"protein mislocalized to cell cortex of cell tip during mitotic cell cycle","type":"related"},{"name":"protein mislocalized to cell cortex of cell tip during vegetative growth","type":"exact"},{"name":"protein mislocalized to cell tip cortex","type":"exact"}],"termid":"FYPO:0006873"}


id: PBO:0046450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epiplakin 1","termid":"PBO:0046450"}


id: PBO:0026707
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_chromatin_at_stalled_replication_fork","termid":"PBO:0026707"}


id: MONDO:0001187
data:
  {"annotated_genes":["SJAG_03453"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88118],"is_not":false,"summary":null,"term":"MONDO:0001187"}]},"cv_name":"mondo","definition":"A primary or metastatic malignant neoplasm involving the bladder.","definition_xrefs":["NCIT:C9334"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urinary bladder neoplasm","termid":"MONDO:0004987"},{"relation_name":"is_a","term_name":"malignant urinary system neoplasm","termid":"MONDO:0006295"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03453":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"urinary bladder cancer","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0005684","ICD9:188","ICD9:188.9","Orphanet:157980","DOID:11054","MEDGEN:14150","OMIM:109800","ICD9:188.8","SCTID:399326009"],"synonyms":[{"name":"bladder cancer, somatic","type":"exact"},{"name":"cancer of urinary bladder","type":"exact"},{"name":"malignant bladder neoplasm","type":"exact"},{"name":"malignant bladder tumor","type":"exact"},{"name":"malignant bladder tumour","type":"exact"},{"name":"malignant neoplasm of bladder","type":"exact"},{"name":"malignant neoplasm of the bladder","type":"exact"},{"name":"malignant neoplasm of the urinary bladder","type":"exact"},{"name":"malignant neoplasm of urinary bladder","type":"exact"},{"name":"malignant neoplasm, bladder","type":"exact"},{"name":"malignant neoplasm, urinary bladder","type":"exact"},{"name":"malignant tumor of bladder","type":"exact"},{"name":"malignant tumor of the bladder","type":"exact"},{"name":"malignant tumor of the urinary bladder","type":"exact"},{"name":"malignant tumor of urinary bladder","type":"exact"},{"name":"malignant tumor, urinary bladder","type":"exact"},{"name":"malignant tumour of bladder","type":"exact"},{"name":"malignant tumour of the bladder","type":"exact"},{"name":"malignant tumour of the urinary bladder","type":"exact"},{"name":"malignant tumour of urinary bladder","type":"exact"},{"name":"malignant urinary bladder neoplasm","type":"exact"},{"name":"malignant urinary bladder tumor","type":"exact"},{"name":"malignant urinary bladder tumour","type":"exact"},{"name":"tumor of the bladder","type":"broad"},{"name":"tumour of the bladder","type":"broad"},{"name":"urinary bladder cancer","type":"exact"},{"name":"urinary bladder malignant neoplasm","type":"exact"},{"name":"urinary bladder malignant tumor","type":"exact"},{"name":"urinary bladder malignant tumour","type":"exact"}],"termid":"MONDO:0001187","terms_by_termid":{"MONDO:0001187":null},"xrefs":{"Monarch":{"xref_id":"0001187"}}}


id: PBO:0076535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 62 pseudogene","termid":"PBO:0076535"}


id: MONDO:1012076
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"facial digital syndrome, non-human animal","termid":"MONDO:1011654"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"facial digital syndrome, cattle","secondary_identifiers":["OMIA:000360-9913"],"termid":"MONDO:1012076","xrefs":{"Monarch":{"xref_id":"1012076"}}}


id: GO:0018418
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The incorporation of nickel into a 3Fe-2S complex by tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide.","definition_xrefs":["RESID:AA0293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron-sulfur cluster assembly","termid":"GO:0016226"},{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"},{"relation_name":"is_a","term_name":"peptidyl-glutamic acid modification","termid":"GO:0018200"},{"relation_name":"is_a","term_name":"peptidyl-histidine modification","termid":"GO:0018202"},{"relation_name":"is_a","term_name":"nickel incorporation into metallo-sulfur cluster","termid":"GO:0018414"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0016226","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"nickel incorporation into iron-sulfur cluster via tris-L-cysteinyl L-cysteine persulfido L-glutamato L-histidino L-serinyl nickel triiron disulfide trioxide","synonyms":[{"name":"nickel incorporation into iron-sulphur cluster via tris-L-cysteinyl L-cysteine persulphido L-glutamato L-histidino L-serinyl nickel triiron disulphide trioxide","type":"exact"}],"termid":"GO:0018418"}


id: MONDO:0001249
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A chronic infection of the conjunctiva and cornea caused by chlamydia trachomatis.","definition_xrefs":["MESH:D014141"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chlamydia trachomatis infectious disease","termid":"MONDO:0005701"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trachoma","secondary_identifiers":["icd11.foundation:372424530","ICD9:076.1","DOID:11265","SCTID:2576002","UMLS:C0040592","ICD9:076","ICD9:076.0","ICD9:076.9","MEDGEN:52801"],"synonyms":[{"name":"active stage trachoma","type":"exact"},{"name":"trachoma dubium","type":"exact"}],"termid":"MONDO:0001249","xrefs":{"Monarch":{"xref_id":"0001249"}}}


id: FYPO:0005078
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to a combination of canavanine and rapamycin. Cells stop growing (and may die) at concentrations of canavanine and rapamycin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah","PMID:17179073"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002683","FYPO:0001985","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to canavanine and rapamycin","synonyms":[{"name":"hypersensitive to canavanine and rapamycin","type":"exact"},{"name":"sensitive to canavanine and rapamycin during mitotic cell cycle","type":"related"},{"name":"sensitive to canavanine and rapamycin during vegetative growth","type":"exact"},{"name":"sensitive to canavanine and rapamycin in combination","type":"exact"}],"termid":"FYPO:0005078"}


id: PBO:0028792
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_elongated_vegetative_cell,_with_progressive_elongation","termid":"PBO:0028792"}


id: PBO:0035790
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_during_cellular_response_to_endoplasmic_reticulum_stress","termid":"PBO:0035790"}


id: MONDO:0006888
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A diffuse or multifocal peripheral neuropathy caused by the effects of a distant neoplasm. It may be attributed, in part, to the immune response to neoplasm-elaborated proteins. The neuropathy may be sensory, motor, mixed or autonomic. It may be the initial presentation of an occult neoplasm. Detection and resection of the neoplasm may result in cure.","definition_xrefs":["NCIT:C3981"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete inflammatory and toxic neuropathy (obsolete MONDO:0002336)","termid":"MONDO:0002336"},{"relation_name":"is_a","term_name":"polyneuropathy","termid":"MONDO:0001824"},{"relation_name":"is_a","term_name":"paraneoplastic neurologic syndrome","termid":"MONDO:0018215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"paraneoplastic polyneuropathy","secondary_identifiers":["DOID:8681","ICD9:357.3","MESH:D020364","MEDGEN:124380","UMLS:C0270932","MedDRA:10062289","SCTID:77659000"],"synonyms":[{"name":"paraneoplastic polyneuropathy","type":"exact"}],"termid":"MONDO:0006888","xrefs":{"Monarch":{"xref_id":"0006888"}}}


id: PBO:0076319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptopodin 2 like","termid":"PBO:0076319"}


id: PATO:0001459
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A sensitivity of a process inhering in a biological process by virtue of the process unfolding in a location with oxygen.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitivity of a process to oxygen","termid":"PATO:0001458"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aerobic (for occurrence)","termid":"PATO:0001459"}


id: PBO:0089321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase PP2A regulatory subunit, Zds1","termid":"PBO:0089321"}


id: MONDO:0800472
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary congenital glaucoma in which the cause of the disease is a mutation in the CYP1B1 gene.","definition_xrefs":["PMID:24099281","PMID:23767995","PMID:9097971"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary congenital glaucoma","termid":"MONDO:0000365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"CYP1B1-related glaucoma with or without anterior segment dysgenesis","termid":"MONDO:0800472","xrefs":{"Monarch":{"xref_id":"0800472"}}}


id: PBO:0001703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome export GTPase (predicted)","termid":"PBO:0001703"}


id: PBO:0114317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional coactivator for ribosomal proteins via TOR signaling pathway Crf1Ifh1","termid":"PBO:0114317"}


id: GO:0014745
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of muscle adaptation.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle adaptation","termid":"GO:0043502"},{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"negatively_regulates","term_name":"muscle adaptation","termid":"GO:0043500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of muscle adaptation","synonyms":[{"name":"negative regulation of muscle plasticity","type":"related"}],"termid":"GO:0014745"}


id: PATO:0001137
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001137 ig g concentration (obsolete PATO:0001137)","termid":"PATO:0001137"}


id: PR:Q9Y7L4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An exonuclease V that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03411","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exonuclease V, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC685.02","secondary_identifiers":["UniProtKB:Q9Y7L4"],"synonyms":[{"name":"Exo V (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-EXO5","type":"exact"}],"termid":"PR:Q9Y7L4"}


id: PBO:0038640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA thioesterase 7","termid":"PBO:0038640"}


id: PBO:0066299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinol binding protein 1","termid":"PBO:0066299"}


id: PBO:0024822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pumilio family RNA-binding protein Puf3 (predicted)","termid":"PBO:0024822"}


id: MONDO:1012352
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"urticaria pigmentosa, non-human animal","termid":"MONDO:1011748"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urticaria pigmentosa, domestic cat","secondary_identifiers":["OMIA:001289-9685"],"termid":"MONDO:1012352","xrefs":{"Monarch":{"xref_id":"1012352"}}}


id: PATO:0001257
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Pink color having high brightness and moderate saturation.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pink","termid":"PATO:0000954"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"light deep pink","termid":"PATO:0001257"}


id: GO:0003072
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The renal process that modulates the force with which blood travels through the circulatory system, by impeding blood flow through the peripheral vasculature.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal system process involved in regulation of systemic arterial blood pressure","termid":"GO:0003071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"renal control of peripheral vascular resistance involved in regulation of systemic arterial blood pressure","synonyms":[{"name":"regulation of systemic arterial blood pressure by renal control of peripheral vascular resistance","type":"exact"},{"name":"renal regulation of systemic arterial blood pressure by control of peripheral vascular resistance","type":"exact"}],"termid":"GO:0003072"}


id: PBO:0076444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor 15","termid":"PBO:0076444"}


id: MONDO:0033115
data:
  {"annotated_genes":["SJAG_00059"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87248],"is_not":false,"summary":null,"term":"MONDO:0033115"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive cerebellar ataxia","termid":"MONDO:0015244"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00059":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005559"],"is_obsolete":false,"name":"spinocerebellar ataxia, autosomal recessive 25","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:617584","DOID:0080259","UMLS:C4539808","MEDGEN:1618081"],"synonyms":[{"name":"SCAR25","type":"related"},{"name":"autosomal recessive spinocerebellar ataxia 25","type":"related"},{"name":"spinocerebellar ataxia, autosomal recessive 25","type":"exact"}],"termid":"MONDO:0033115","terms_by_termid":{"MONDO:0033115":null},"xrefs":{"Monarch":{"xref_id":"0033115"}}}


id: PBO:0063249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin alpha 14 pseudogene","termid":"PBO:0063249"}


id: PBO:0083524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF RRP15, which is required for ribosomal RNA processing","termid":"PBO:0083524"}


id: GO:0007250
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The stimulation of the activity of NF-kappaB-inducing kinase through phosphorylation at specific residues.","definition_xrefs":["GOC:jl","PMID:12773372"],"direct_ancestors":[{"relation_name":"is_a","term_name":"activation of protein kinase activity","termid":"GO:0032147"},{"relation_name":"part_of","term_name":"non-canonical NF-kappaB signal transduction","termid":"GO:0038061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"activation of NF-kappaB-inducing kinase activity","synonyms":[{"name":"activation of NIK activity","type":"exact"},{"name":"positive regulation of NF-kappaB-inducing kinase activity","type":"broad"}],"termid":"GO:0007250"}


id: MONDO:0017579
data:
  {"annotated_genes":["SJAG_03145"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88287],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013812"}]},"cv_name":"mondo","definition":"Baraitser-Winter syndrome (BWS) is a malformation syndrome, characterized by facial dysmorphism (hypertelorism with ptosis, broad bulbous nose, ridged metopic suture, arched eyebrows, progressive coarsening of the face), ocular coloboma, pachygyria and/or band heterotopias with antero-posterior gradient, progressive joint stiffening, and intellectual deficit of variable severity, often with severe epilepsy. Pachygyria - epilepsy - intellectual disability - dysmorphism (Fryns-Aftimos syndrome (FA)) corresponds to the appearance of BWS in elderly patients.","definition_xrefs":["Orphanet:2995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"lissencephaly spectrum disorders","termid":"MONDO:0018838"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03145":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"Baraitser-Winter cerebrofrontofacial syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0060229","GARD:5279","ICD9:759.89","MEDGEN:340016","SCTID:702410002","UMLS:C1853623","OMIMPS:243310"],"synonyms":[{"name":"BRWS","type":"related"},{"name":"Baraitser-Winter syndrome","type":"exact"},{"name":"Fryns-Aftimos syndrome","type":"related"},{"name":"cerebro-frontofacial syndrome, type 3","type":"related"},{"name":"iris coloboma with ptosis hypertelorism and intellectual disability","type":"related"},{"name":"iris coloboma with ptosis hypertelorism and mental retardation","type":"related"},{"name":"trigonocephaly ptosis coloboma","type":"related"},{"name":"trigonocephaly ptosis intellectual disability","type":"related"},{"name":"trigonocephaly ptosis mental retardation","type":"related"}],"termid":"MONDO:0017579","terms_by_termid":{"MONDO:0013812":null},"xrefs":{"Monarch":{"xref_id":"0017579"}}}


id: PBO:0070963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18 pseudogene 1","termid":"PBO:0070963"}


id: PBO:0034168
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_between-species_paralogy_relationship_with","termid":"PBO:0034168"}


id: FYPO:0003087
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) in a mutant is normal (i.e. indistinguishable from wild type) at a replication fork barrier in the mating-type region.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal chromatin binding","termid":"FYPO:0003086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000257"],"is_obsolete":false,"name":"normal chromatin binding at mating-type region replication fork barrier","termid":"FYPO:0003087"}


id: FYPO:0001842
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of adenylyl cyclase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal adenylyl cyclase activity","termid":"FYPO:0001841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000654","FYPO:0000661","FYPO:0000652"],"is_obsolete":false,"name":"increased adenylyl cyclase activity","synonyms":[{"name":"increased adenylate cyclase activity","type":"exact"}],"termid":"FYPO:0001842"}


id: PBO:0082989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytosolic branched-chain amino acid (BCAA) aminotransferase; preferentially involved in BCAA catabolism; homolog of murine ECA39; highly expressed during stationary phase and repressed during logarithmic phase; BAT2 has a paralog, BAT1, that arose from the whole genome duplication","termid":"PBO:0082989"}


id: MONDO:0010336
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Oral-facial-digital syndrome, type 8 is characterized by tongue lobulation, hypoplasia of the epiglottis, median cleft upper lip, broad or bifid nasal tip, hypertelorism or telecanthus, bilateral preaxial and postaxial polydactyly, abnormal tibiae and/or radii, duplication of the halluces, short stature, and mild intellectual deficit.","definition_xrefs":["Orphanet:2755"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orofaciodigital syndrome","termid":"MONDO:0015375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"orofaciodigital syndrome VIII","secondary_identifiers":["GARD:4060","MEDGEN:208667","MESH:C557820","DOID:0060378","OMIM:300484","SCTID:722106001","UMLS:C0796101"],"synonyms":[{"name":"OFD syndrome 8","type":"related"},{"name":"OFD8","type":"exact"},{"name":"Ofds 8","type":"related"},{"name":"oral facial digital syndrome 8","type":"related"},{"name":"oral facial digital syndrome type 8","type":"related"},{"name":"oral-Facial-digital syndrome with hypoplastic Epiglottis","type":"related"},{"name":"oral-Facial-digital syndrome, type 8","type":"related"},{"name":"oral-facial-digital syndrome type 8","type":"exact"},{"name":"oral-facial-digital syndrome, Edwards type","type":"exact"},{"name":"orofaciodigital syndrome 8","type":"related"},{"name":"orofaciodigital syndrome VIII","type":"exact"},{"name":"orofaciodigital syndrome VIII, X-linked recessive","type":"exact"},{"name":"orofaciodigital syndrome type 8","type":"related"},{"name":"orofaciodigital syndrome type VIII","type":"exact"},{"name":"orofaciodigital syndrome, Edwards type","type":"exact"}],"termid":"MONDO:0010336","xrefs":{"Monarch":{"xref_id":"0010336"}}}


id: PBO:0083096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA damage response kinase; signal transduction pathway component required for DNA damage and replication checkpoints, promoting cell cycle arrest and DNA repair; role in initiation of DNA replication; inhibits gene gating through NPC protein phosphorylation, to promote fork stability; activates downstream kinase Dun1p; senses mtDNA depletion and mitochondrial ROS; relocalizes to cytosol under hypoxia; contains two FHA domains; human homolog CHEK2 implicated in breast cancer complements the null","termid":"PBO:0083096"}


id: MONDO:0018365
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"ovarian cancer","termid":"MONDO:0008170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant non-epithelial tumor of ovary","secondary_identifiers":["MEDGEN:1843209","GARD:21650","Orphanet:398940","UMLS:C5680039"],"synonyms":[{"name":"non-epithelial cancer of ovary","type":"exact"},{"name":"ovarian malignant non-epithelial tumor","type":"exact"},{"name":"ovarian malignant non-epithelial tumour","type":"exact"},{"name":"ovarian non-epithelial cancer","type":"exact"}],"termid":"MONDO:0018365","xrefs":{"Monarch":{"xref_id":"0018365"}}}


id: PR:Q09173
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ptc3 gene.","definition_xrefs":["UniProtKB:Q09173","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 2C homolog 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2G11.07c","synonyms":[{"name":"PP2C-3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ptc3","type":"exact"}],"termid":"PR:Q09173"}


id: PBO:0059627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTCH1 pseudogene 2","termid":"PBO:0059627"}


id: MONDO:0002319
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A metabolic disorder that affects the phosphate homeostasis.","definition_xrefs":["NCIT:C97095"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mineral metabolism disease","termid":"MONDO:0000226"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"phosphorus metabolism disease","secondary_identifiers":["MEDGEN:19276","MESH:D010760","SCTID:87049008","UMLS:C0031707","ICD9:275.3","DOID:2485","ICD10CM:E83.3"],"synonyms":[{"name":"disorder of phosphorus metabolism","type":"exact"},{"name":"phosphorus disorder","type":"exact"},{"name":"phosphorus metabolic disorder","type":"exact"},{"name":"phosphorus metabolism disorder","type":"exact"}],"termid":"MONDO:0002319","xrefs":{"Monarch":{"xref_id":"0002319"}}}


id: PBO:0040655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-butyrobetaine hydroxylase 1","termid":"PBO:0040655"}


id: GO:0030891
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that possesses ubiquitin ligase activity; the complex is usually pentameric; for example, in mammals the subunits are pVHL, elongin B, elongin C, cullin-2 (Cul2), and Rbx1.","definition_xrefs":["GOC:mah","PMID:11865071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic ubiquitin ligase complex","termid":"GO:0000153"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"VCB complex","synonyms":[{"name":"VHL complex","type":"exact"},{"name":"pVHL-elongin C-elongin B complex","type":"exact"},{"name":"von Hippel-Lindau tumor suppressor complex","type":"exact"}],"termid":"GO:0030891"}


id: MONDO:0017421
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete non-syndromic terminal limb defects (obsolete MONDO:0017421)","secondary_identifiers":["Orphanet:294929"],"synonyms":[{"name":"isolated terminal limb defects","type":"related"},{"name":"nonsyndromic terminal limb defects","type":"exact"},{"name":"terminal limb defects","type":"exact"},{"name":"terminal meromelia","type":"exact"}],"termid":"MONDO:0017421","xrefs":{"Monarch":{"xref_id":"0017421"}}}


id: GO:0047161
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: hydroxymalonate + sinapoyl-CoA = CoA + sinapoyltartronate.","definition_xrefs":["EC:2.3.1.106","RHEA:10952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-hydroxycinnamoyltransferase activity","termid":"GO:0050737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016746","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"tartronate O-hydroxycinnamoyltransferase activity","secondary_identifiers":["MetaCyc:2.3.1.106-RXN","KEGG_REACTION:R03965"],"synonyms":[{"name":"hydroxycinnamoyl-coenzyme-A:tartronate hydroxycinnamoyltransferase activity","type":"related"},{"name":"sinapoyl-CoA:2-hydroxymalonate O-(hydroxycinnamoyl)transferase activity","type":"related"},{"name":"tartronate sinapoyltransferase activity","type":"related"}],"termid":"GO:0047161"}


id: PBO:0091007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, stationary phase-specific Phx1","termid":"PBO:0091007"}


id: PBO:0014596
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae CDC28 when introns removed","termid":"PBO:0014596"}


id: PATO:0001964
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A curled quality inhering in a bearer by virtue of the bearer's edges of its surface being rolled spirally downwards.","definition_xrefs":["ISBN:0881923214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"curled","termid":"PATO:0000405"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"circinate","termid":"PATO:0001964"}


id: GO:0032651
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of interleukin-1 beta production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of interleukin-1 production","termid":"GO:0032652"},{"relation_name":"regulates","term_name":"interleukin-1 beta production","termid":"GO:0032611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of interleukin-1 beta production","secondary_identifiers":["GO:0050706","GO:0050722"],"synonyms":[{"name":"regulation of IL-1 beta production","type":"exact"},{"name":"regulation of interleukin-1 beta biosynthetic process","type":"narrow"},{"name":"regulation of interleukin-1 beta secretion","type":"narrow"}],"termid":"GO:0032651"}


id: PBO:0068015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 320","termid":"PBO:0068015"}


id: PR:000025003
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mfm1 gene or a 1:1 ortholog thereof.","definition_xrefs":["PRO:MSY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"M-factor precursor mfm1","pombase_gene_id":"SPAPB8E5.05","synonyms":[{"name":"mfm1","type":"exact"}],"termid":"PR:000025003"}


id: MONDO:0020512
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"acute lymphoblastic leukemia","termid":"MONDO:0004967"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"precursor T-cell acute lymphoblastic leukemia","secondary_identifiers":["EFO:1001830","icd11.foundation:803161771","GARD:19694","Orphanet:99861"],"synonyms":[{"name":"T-ALL","type":"broad"},{"name":"precursor T-cell acute lymphoblastic leukemia/lymphoma","type":"exact"},{"name":"precursor T-cell acute lymphocytic leukaemia","type":"exact"},{"name":"precursor T-cell acute lymphocytic leukemia","type":"exact"},{"name":"precursor T-cell acute lymphocytic leukemia/lymphoma","type":"exact"}],"termid":"MONDO:0020512","xrefs":{"Monarch":{"xref_id":"0020512"}}}


id: PBO:0074759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 118","termid":"PBO:0074759"}


id: PBO:0043058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatin accessibility complex subunit 1","termid":"PBO:0043058"}


id: RO:0002000
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity","direct_ancestors":[{"relation_name":"is_a","term_name":"mereotopologically_related_to","termid":"RO:0002323"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2D_boundary_of","termid":"RO:0002000"}


id: GO:0006746
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving the reduced form of flavin adenine dinucleotide.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavin adenine dinucleotide metabolic process","termid":"GO:0072387"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"FADH2 metabolic process","synonyms":[{"name":"FADH2 metabolism","type":"exact"},{"name":"reduced flavin adenine dinucleotide metabolic process","type":"exact"}],"termid":"GO:0006746"}


id: PBO:0051592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 21","termid":"PBO:0051592"}


id: MONDO:0002345
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute or chronic inflammatory process that affects the cervix. Causes include sexually transmitted diseases and bacterial infections. Clinical manifestations include abnormal vaginal bleeding and vaginal discharge.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cervix disorder","termid":"MONDO:0002256"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervicitis","secondary_identifiers":["MEDGEN:3338","NCIT:C26716","DOID:2568","SCTID:37610005","icd11.foundation:1433247301","UMLS:C0007860","MESH:D002575","ICD9:616.0","HP:0030160"],"synonyms":[{"name":"cervicitis","type":"exact"},{"name":"cervicitis (disease)","type":"exact"}],"termid":"MONDO:0002345","xrefs":{"Monarch":{"xref_id":"0002345"}}}


id: GO:1900935
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of nonadec-1-ene biosynthetic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of olefin biosynthetic process","termid":"GO:1900911"},{"relation_name":"is_a","term_name":"regulation of nonadec-1-ene metabolic process","termid":"GO:1900932"},{"relation_name":"regulates","term_name":"nonadec-1-ene biosynthetic process","termid":"GO:1900877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of nonadec-1-ene biosynthetic process","synonyms":[{"name":"regulation of nonadec-1-ene anabolism","type":"exact"},{"name":"regulation of nonadec-1-ene biosynthesis","type":"exact"},{"name":"regulation of nonadec-1-ene formation","type":"exact"},{"name":"regulation of nonadec-1-ene synthesis","type":"exact"}],"termid":"GO:1900935"}


id: PBO:0001921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clp1-interacting protein Nsk1","termid":"PBO:0001921"}


id: PBO:0078926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Arg (anticodon ACG) 2-2","termid":"PBO:0078926"}


id: FYPO:0001763
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which tRNA methylation, the posttranscriptional addition of methyl groups to specific residues in a tRNA molecule, is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","GO:0030488"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal tRNA modification","termid":"FYPO:0001762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal tRNA methylation","synonyms":[{"name":"normal tRNA methylation during mitotic cell cycle","type":"related"},{"name":"normal tRNA methylation during vegetative growth","type":"exact"}],"termid":"FYPO:0001763"}


id: PBO:0055510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2944","termid":"PBO:0055510"}


id: MONDO:1040040
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any isolated retinopathy caused by variants in the HGSNAT gene.","definition_xrefs":["PMID:25859010"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"HGSNAT-related retinopathy","synonyms":[{"name":"HGSNAT-related retinopathy","type":"exact"}],"termid":"MONDO:1040040","xrefs":{"Monarch":{"xref_id":"1040040"}}}


id: MONDO:0005988
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A parasitic infection caused by worms found in domestic animals. In humans nematode larvae enter the portal system from the small intestine and disseminate in visceral organs causing inflammatory reactions. Signs and symptoms include eosinophilia, hepatomegaly, splenomegaly, and lung infections.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Ascaridida infectious disease","termid":"MONDO:0005656"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"toxocariasis","secondary_identifiers":["NCIT:C85194","EFO:0007516","MESH:D014120","icd11.foundation:1794729263","SCTID:406619001","ICD9:128.0","NCIT:C34758","Orphanet:3343","MEDGEN:21596","DOID:9790","UMLS:C0040553","GARD:18793","MedDRA:10044269"],"synonyms":[{"name":"Toxocara caused disease or disorder","type":"exact"},{"name":"Toxocara disease or disorder","type":"exact"},{"name":"Toxocara infection","type":"exact"},{"name":"Toxocara infectious disease","type":"exact"},{"name":"infection by Toxascaris","type":"exact"},{"name":"visceral larva migrans","type":"exact"}],"termid":"MONDO:0005988","xrefs":{"Monarch":{"xref_id":"0005988"}}}


id: GO:0120259
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribonucleoprotein complex that contains the 7SK snRNA. The 7SK snRNP plays a central role in RNA polymerase II elongation control by regulating the availability of active P-TEFb.","definition_xrefs":["PMID:28431135","PMID:18249148"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small nuclear ribonucleoprotein complex","termid":"GO:0030532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"7SK snRNP","synonyms":[{"name":"snRNP 7SK","type":"exact"}],"termid":"GO:0120259"}


id: PBO:0026871
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K4_methylation_at_telomere","termid":"PBO:0026871"}


id: PBO:0089806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrestin-related substrate adaptor Any2","termid":"PBO:0089806"}


id: PBO:0083163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps the verified gene SSB1","termid":"PBO:0083163"}


id: MONDO:0000275
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A genetic disease that is the result of one or more abnormal alleles and may be dominant (a single copy of the abnormal allele is sufficient to give rise to the disease), semi-dominant, or recessive (requiring both copies of the gene to have an abnormal allele).","definition_xrefs":["DO:wk,ls","DOID:0050177"],"gene_count":0,"genotype_count":0,"name":"obsolete monogenic disease (obsolete MONDO:0000275)","termid":"MONDO:0000275","xrefs":{"Monarch":{"xref_id":"0000275"}}}


id: PBO:0045438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dpy-19 like C-mannosyltransferase 3","termid":"PBO:0045438"}


id: FYECO:0000306
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"A sequential growth condition in which cells are first grown at a standard temperature, transferred to low, and then to high temperature.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping sequential growth conditions","termid":"FYECO:0000094"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"two-step temperature shift, standard to low, low to high","termid":"FYECO:0000306"}


id: GO:0020036
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A disk-like structure that appears at the periphery of a red blood cell infected by an apicomplexan parasite, characterized by a translucent lumen and an electron-dense coat of variable thickness; often appears to be tethered to the host cell membrane by fibrous connections with the erythrocyte cytoskeleton.","definition_xrefs":["PMID:16705161"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell cytoplasm part","termid":"GO:0033655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"Maurer's cleft","synonyms":[{"name":"Maurers cleft","type":"exact"}],"termid":"GO:0020036"}


id: PR:O14339
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl1701 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14339"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L17-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2F12.04","synonyms":[{"name":"Spom972h-rpl1701","type":"exact"}],"termid":"PR:O14339"}


id: MONDO:0006739
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A transplantable, poorly differentiated malignant tumor which appeared originally as a spontaneous breast carcinoma in a mouse. It grows in both solid and ascitic forms.","definition_xrefs":["MESH:D002286"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast carcinoma","termid":"MONDO:0004989"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"Ehrlich tumor carcinoma","secondary_identifiers":["DOID:5050","EFO:1000913","MEDGEN:40103","UMLS:C0007125"],"synonyms":[{"name":"Ehrlich's tumor","type":"exact"},{"name":"Ehrlich's tumour","type":"exact"}],"termid":"MONDO:0006739","xrefs":{"Monarch":{"xref_id":"0006739"}}}


id: PBO:0003401
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae YGL056C and YBR214W","termid":"PBO:0003401"}


id: FYPO:0004859
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more polysaccharides measured in the cell wall is greater than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased polysaccharide level during vegetative growth","termid":"FYPO:0001083"},{"relation_name":"is_a","term_name":"altered level of substance in cell wall during vegetative growth","termid":"FYPO:0002627"},{"relation_name":"output_of","term_name":"abnormal cell wall biogenesis","termid":"FYPO:0000174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased cell wall polysaccharide level","synonyms":[{"name":"increased cell wall polysaccharide accumulation","type":"related"},{"name":"increased cell wall polysaccharide level during mitotic cell cycle","type":"related"},{"name":"increased cell wall polysaccharide level during vegetative growth","type":"exact"}],"termid":"FYPO:0004859"}


id: PBO:0046865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fumarylacetoacetate hydrolase domain containing 2C, pseudogene","termid":"PBO:0046865"}


id: PBO:0041831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer susceptibility 6","termid":"PBO:0041831"}


id: GO:0031913
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Stable structure that regulates the flow of liquid between the contractile vacuole and the surrounding medium.","definition_xrefs":["PMID:10503189"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"part_of","term_name":"cytoskeleton","termid":"GO:0005856"},{"relation_name":"part_of","term_name":"contractile vacuolar membrane","termid":"GO:0031164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"part_of","termid":"GO:0005773"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005773","GO:0031410","GO:0005886","GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"contractile vacuole pore","termid":"GO:0031913"}


id: PBO:0083277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; deletion mutation enhances replication of Brome mosaic virus in S. cerevisiae, but this is likely due to effects on the overlapping gene ELP4","termid":"PBO:0083277"}


id: PBO:0049320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GS homeobox 2","termid":"PBO:0049320"}


id: PBO:0065861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB18, member RAS oncogene family","termid":"PBO:0065861"}


id: PBO:0052299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KH RNA binding domain containing, signal transduction associated 3","termid":"PBO:0052299"}


id: MONDO:0013356
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any vesicoureteral reflux in which the cause of the disease is a mutation in the SOX17 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial vesicoureteral reflux","termid":"MONDO:0017329"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vesicoureteral reflux 3","secondary_identifiers":["MEDGEN:462277","UMLS:C3150927","GARD:18420","OMIM:613674"],"synonyms":[{"name":"SOX17 vesicoureteral reflux (disease)","type":"exact"},{"name":"VUR3","type":"related"},{"name":"vesicoureteral reflux (disease) caused by mutation in SOX17","type":"exact"},{"name":"vesicoureteral reflux 3","type":"exact"},{"name":"vesicoureteral reflux type 3","type":"exact"}],"termid":"MONDO:0013356","xrefs":{"Monarch":{"xref_id":"0013356"}}}


id: PBO:0057542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 658","termid":"PBO:0057542"}


id: PBO:0029862
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_tyrosine_phosphorylation","termid":"PBO:0029862"}


id: GO:0102053
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (-)-jasmonate + L-isoleucine + ATP(4-) = H+ + (-)-jasmonoyl-L-isoleucine + AMP(2-) + diphosphoric acid.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete (-)-jasmonoyl-isoleucine synthetase activity (obsolete GO:0102053)","termid":"GO:0102053"}


id: PBO:0071330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L27 pseudogene 7","termid":"PBO:0071330"}


id: GO:0043252
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed, sodium-independent, movement of organic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"sodium-independent organic anion transport","secondary_identifiers":["Reactome:R-HSA-879518"],"termid":"GO:0043252"}


id: FYPO:0005083
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at non-coding RNA (ncRNA) genes is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:21151114"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin during vegetative growth","termid":"FYPO:0001509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to chromatin at ncRNA gene","synonyms":[{"name":"normal protein localisation to chromatin at ncRNA gene","type":"exact"},{"name":"normal protein localization to chromatin at ncRNA gene during mitotic cell cycle","type":"related"},{"name":"normal protein localization to chromatin at ncRNA gene during vegetative growth","type":"exact"}],"termid":"FYPO:0005083"}


id: PBO:0004437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nascent polypeptide-associated complex alpha subunit Egd2","termid":"PBO:0004437"}


id: PR:O94553
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA-directed RNA polymerase III subunit RPC6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12780:SF0","PRO:DNx","OMA:SCHPO04900"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase III subunit rpc6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC290.02","secondary_identifiers":["UniProtKB:O94553"],"synonyms":[{"name":"DNA-directed RNA polymerase III 34 kDa polypeptide (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNA polymerase III subunit C34 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNA polymerase III subunit C6 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-POLR3F","type":"exact"}],"termid":"PR:O94553"}


id: MONDO:0014193
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary ciliary dyskinesia in which the cause of the disease is a mutation in the ARMC4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary ciliary dyskinesia","termid":"MONDO:0016575"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary ciliary dyskinesia 23","secondary_identifiers":["MEDGEN:815878","UMLS:C3809548","OMIM:615451","DOID:0110609","GARD:15969"],"synonyms":[{"name":"ARMC4 primary ciliary dyskinesia","type":"exact"},{"name":"CILD23","type":"exact"},{"name":"ciliary dyskinesia, primary, 23","type":"related"},{"name":"ciliary dyskinesia, primary, 23, with or without situs inversus","type":"related"},{"name":"ciliary dyskinesia, primary, type 23","type":"exact"},{"name":"primary ciliary dyskinesia 23 with or without situs inversus","type":"exact"},{"name":"primary ciliary dyskinesia caused by mutation in ARMC4","type":"exact"},{"name":"primary ciliary dyskinesia type 23","type":"exact"}],"termid":"MONDO:0014193","xrefs":{"Monarch":{"xref_id":"0014193"}}}


id: GO:0060795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of cells to specific cell fates of the endoderm, ectoderm, or mesoderm as a part of gastrulation.","definition_xrefs":["GOC:sdb_2009","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate commitment","termid":"GO:0045165"},{"relation_name":"part_of","term_name":"formation of primary germ layer","termid":"GO:0001704"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell fate commitment involved in formation of primary germ layer","termid":"GO:0060795"}


id: PBO:0074629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 24B","termid":"PBO:0074629"}


id: MONDO:1010745
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Dermatomyositis that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dermatomyositis, non-human animal","termid":"MONDO:1010127"},{"relation_name":"is_a","term_name":"polymyositis, dog","termid":"MONDO:1010931"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dermatomyositis, dog","secondary_identifiers":["OMIA:000270-9615"],"termid":"MONDO:1010745","xrefs":{"Monarch":{"xref_id":"1010745"}}}


id: SO:0002332
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence.","definition_xrefs":["SO:ds"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"epigenetically_modified","termid":"SO:0000133"},{"relation_name":"is_a","term_name":"epigenetically_modified_region","termid":"SO:0001720"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epigenomically_modified_region","secondary_identifiers":["https://epi.grants.cancer.gov/epigen/#\\:~\\:text=mail.nih.gov-\\,Overview\\,a%20cell%20or%20entire%20organism."],"synonyms":[{"name":"epigenomically modified region","type":"exact"}],"termid":"SO:0002332"}


id: MONDO:0012144
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Waardenburg syndrome type 2 in which the cause of the disease is a mutation in the SNAI2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Waardenburg syndrome type 2","termid":"MONDO:0019517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"Waardenburg syndrome type 2D","secondary_identifiers":["MESH:C563839","OMIM:608890","UMLS:C1837203","MEDGEN:323102","DOID:0110952"],"synonyms":[{"name":"SNAI2 Waardenburg syndrome type 2","type":"exact"},{"name":"WS2D","type":"exact"},{"name":"Waardenburg syndrome type 2 caused by mutation in SNAI2","type":"exact"},{"name":"Waardenburg syndrome type IID","type":"exact"},{"name":"Waardenburg syndrome, type 2D","type":"related"}],"termid":"MONDO:0012144","xrefs":{"Monarch":{"xref_id":"0012144"}}}


id: PBO:0038608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA binding domain containing 4","termid":"PBO:0038608"}


id: GO:0018202
data:
  {"annotated_genes":["SJAG_02467","SJAG_04544","SJAG_01058","SJAG_04085","SJAG_04846","SJAG_00251","SJAG_01418","SJAG_00235"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[60181,81909,59847,120808,79647,68203,80902,78801],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017183"}]},"cv_name":"biological_process","definition":"The modification of peptidyl-histidine.","definition_xrefs":["GOC:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-amino acid modification","termid":"GO:0018193"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00235":null,"SJAG_00251":null,"SJAG_01058":null,"SJAG_01418":null,"SJAG_02467":null,"SJAG_04085":null,"SJAG_04544":null,"SJAG_04846":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-histidine modification","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"termid":"GO:0018202","terms_by_termid":{"GO:0017183":null}}


id: PBO:0001814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABC transporter Pdr1","termid":"PBO:0001814"}


id: PBO:0040376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase peripheral stalk subunit d pseudogene 4","termid":"PBO:0040376"}


id: PBO:0088669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase Dbp10","termid":"PBO:0088669"}


id: PBO:0091283
data:
  {"annotation_feature_type":"gene","cv_name":"genome_org","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"divergently oriented to functionally related gene","termid":"PBO:0091283"}


id: GO:0015459
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and modulates the activity of a potassium channel.","definition_xrefs":["GOC:mah","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ion channel regulator activity","termid":"GO:0099106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0003674","GO:0098772"],"is_obsolete":false,"name":"potassium channel regulator activity","synonyms":[{"name":"potassium channel gating activity","type":"exact"}],"termid":"GO:0015459"}


id: GO:0036044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of a protein amino acid by the addition of a malonyl (CO-CH2-CO) group.","definition_xrefs":["GOC:sp"],"gene_count":0,"genotype_count":0,"name":"obsolete protein malonylation (obsolete GO:0036044)","synonyms":[{"name":"protein malonylation","type":"exact"}],"termid":"GO:0036044"}


id: PR:O74506
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC594.03 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74506"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C594.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC594.03","synonyms":[{"name":"Spom972h-SPCC594.03","type":"exact"}],"termid":"PR:O74506"}


id: PBO:0056909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYC inducible lncRNA inactivating p53","termid":"PBO:0056909"}


id: GO:0018561
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2'-aminobiphenyl-2,3-diol + O2 = H+ + 2-hydroxy-6-oxo-(2'-aminophenyl)-hexa-2,4-dienoate.","definition_xrefs":["UM-BBD_reactionID:r0457"],"gene_count":0,"genotype_count":0,"name":"obsolete 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase activity (obsolete GO:0018561)","termid":"GO:0018561"}


id: MONDO:0023022
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dwarfism thin bones multiple fractures","termid":"MONDO:0023022","xrefs":{"Monarch":{"xref_id":"0023022"}}}


id: GO:0009243
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of the O side chain of a lipopolysaccharide, which determines the antigenic specificity of the organism. It is made up of about 50 repeating units of a branched tetrasaccharide.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide biosynthetic process","termid":"GO:0000271"},{"relation_name":"is_a","term_name":"O antigen metabolic process","termid":"GO:0046402"},{"relation_name":"part_of","term_name":"lipopolysaccharide biosynthetic process","termid":"GO:0009103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0006629"},{"rel_name":"part_of","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0006629"],"is_obsolete":false,"name":"O antigen biosynthetic process","synonyms":[{"name":"O antigen anabolism","type":"exact"},{"name":"O antigen biosynthesis","type":"exact"},{"name":"O antigen formation","type":"exact"},{"name":"O antigen synthesis","type":"exact"}],"termid":"GO:0009243"}


id: PBO:0068427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, ribosomal 45S cluster 2","termid":"PBO:0068427"}


id: PBO:0084446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mannitol dehydrogenase; deletion suppresses mutation of mpt5; DSF1 has a paralog, MAN2, that arose from a segmental duplication","termid":"PBO:0084446"}


id: PBO:0039863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGAP26 antisense RNA 1","termid":"PBO:0039863"}


id: PR:O74359
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC28E12.02 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74359"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 60 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC28E12.02","synonyms":[{"name":"Spom972h-SPBC28E12.02","type":"exact"}],"termid":"PR:O74359"}


id: PBO:0061315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NPHS2 stomatin family member, podocin","termid":"PBO:0061315"}


id: MOD:02019
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to N6-timnodonoyl-L-lysine.","direct_ancestors":[{"relation_name":"is_a","term_name":"N6-acylated L-lysine","termid":"MOD:01875"},{"relation_name":"is_a","term_name":"N-timnodonoylated residue","termid":"MOD:02020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"},{"rel_name":"is_a","termid":"MOD:01875"}],"interesting_parent_ids":["MOD:01155","MOD:01875"],"is_obsolete":false,"name":"N6-timnodonoyl-L-lysine","termid":"MOD:02019"}


id: PBO:0073811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC6A14 pseudogene 2","termid":"PBO:0073811"}


id: FYPO:0002362
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H3 acetylation occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3 acetylation during vegetative growth","termid":"FYPO:0002361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001320","FYPO:0002274","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased histone H3 acetylation during vegetative growth","synonyms":[{"name":"decreased histone H3 acetylation during mitotic cell cycle","type":"related"},{"name":"reduced histone H3 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0002362"}


id: GO:0016600
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains flotillin-1 and flotillin-2, and may contain associated proteins. Flotillins associate into membrane microdomains resembling caveolae.","definition_xrefs":["PMID:17600709","PMID:17206938"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"part_of","term_name":"caveola","termid":"GO:0005901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"flotillin complex","termid":"GO:0016600"}


id: MONDO:0034981
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A rare ophthalmic disorder characterized by a usually congenital and unilateral round or oval, gray, white, or yellowish depression in the optic disk. There may be more than one pit present in one eye, and the anomaly is most commonly found in the inferotemporal region of the optic disk, although any sector may be involved. Patients are often asymptomatic, or may present with visual field defects, in particular paracentral arcuate scotoma connected to an enlarged blind spot. A number of patients develop serous macular detachment, with loss of vision typically becoming apparent in the third or fourth decade of life. [Orphanet:519404]","definition_xrefs":["Orphanet:519404"],"gene_count":0,"genotype_count":0,"name":"obsolete optic disk pit (obsolete MONDO:0034981)","secondary_identifiers":["ICD10CM:Q14.2"],"termid":"MONDO:0034981","xrefs":{"Monarch":{"xref_id":"0034981"}}}


id: PBO:0003012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldo/keto reductase family protein","termid":"PBO:0003012"}


id: PBO:0113274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"[PIN(+)] prion, named for [PSI+] INducibility; an infectious protein conformation that is generally an ordered protein aggregate","termid":"PBO:0113274"}


id: PR:P87112
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- not1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87112"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general negative regulator of transcription subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC20G8.06","synonyms":[{"name":"Spom972h-not1","type":"exact"}],"termid":"PR:P87112"}


id: PBO:0059157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallophosphoesterase domain containing 1","termid":"PBO:0059157"}


id: GO:0047622
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: adenosine + H2O = D-ribose + adenine.","definition_xrefs":["EC:3.2.2.7","MetaCyc:ADENOSINE-NUCLEOSIDASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleosidase activity","termid":"GO:0008477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016798","GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"adenosine nucleosidase activity","secondary_identifiers":["RHEA:18669"],"synonyms":[{"name":"ANase activity","type":"related"},{"name":"N-ribosyladenine ribohydrolase activity","type":"related"},{"name":"adenosinase activity","type":"related"},{"name":"adenosine hydrolase activity","type":"related"},{"name":"adenosine ribohydrolase activity","type":"related"}],"termid":"GO:0047622"}


id: PR:O42973
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC20F10.03 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42973"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C20F10.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC20F10.03","synonyms":[{"name":"Spom972h-SPBC20F10.03","type":"exact"}],"termid":"PR:O42973"}


id: FYPO:0007897
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process during mitosis in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal during mitotic exit.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein phosphorylation during mitosis","termid":"FYPO:0004355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0002494","FYPO:0002274","FYPO:0000002"],"is_obsolete":false,"name":"increased protein phosphorylation during mitotic exit","termid":"FYPO:0007897"}


id: MONDO:0024881
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm that arises from a pre-existing lower grade lesion, or as a result of a primary lesion that has spread to secondary sites, or due to a complication of a cancer treatment.","definition_xrefs":["NCIT:C4968"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cancer","termid":"MONDO:0004992"},{"relation_name":"is_a","term_name":"secondary neoplasm","termid":"MONDO:0024882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"secondary malignant neoplasm","secondary_identifiers":["UMLS:C3266877","EFO:0009812","ICD9:199.1","MEDGEN:473807","ICD9:198.89","SCTID:128462008"],"synonyms":[{"name":"secondary cancer","type":"exact"},{"name":"secondary malignancy","type":"exact"},{"name":"secondary malignant neoplasm","type":"exact"}],"termid":"MONDO:0024881","xrefs":{"Monarch":{"xref_id":"0024881"}}}


id: MONDO:0020382
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Multifocal pattern dystrophy simulating fundus flavimaculatus is a patterned dystrophy of the retinal pigment epithelium characterized by multiple yellowish irregular flecks scattered or interconnected around the macula, simulating what is observed in Stargardt disease, and usually asymptomatic until adulthood when patients present with a slowly progressive loss of vision that often only becomes apparent in old age.","definition_xrefs":["Orphanet:99003"],"direct_ancestors":[{"relation_name":"is_a","term_name":"patterned dystrophy of the retinal pigment epithelium","termid":"MONDO:0018973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"multifocal pattern dystrophy simulating fundus flavimaculatus","secondary_identifiers":["GARD:19612","SCTID:723408004","UMLS:C4509881","MEDGEN:1376850","ICD10CM:H35.5","icd11.foundation:1819044742"],"synonyms":[{"name":"multifocal pattern dystrophy simulating Stargardt disease","type":"exact"}],"termid":"MONDO:0020382","xrefs":{"Monarch":{"xref_id":"0020382"}}}


id: PBO:0029440
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_degradation","termid":"PBO:0029440"}


id: GO:0005579
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex produced by sequentially activated components of the complement cascade inserted into a target cell membrane and forming a pore leading to cell lysis via ion and water flow.","definition_xrefs":["ISBN:0198547684","ISBN:068340007X","GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pore complex","termid":"GO:0046930"},{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"membrane attack complex","secondary_identifiers":["Wikipedia:Complement_membrane_attack_complex"],"synonyms":[{"name":"MAC","type":"exact"},{"name":"TCC","type":"exact"},{"name":"membrane attack complex protein alphaM chain","type":"narrow"},{"name":"membrane attack complex protein beta2 chain","type":"narrow"},{"name":"terminal complement complex","type":"exact"}],"termid":"GO:0005579"}


id: PBO:0001314
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"expressed during sporulation","termid":"PBO:0001314"}


id: FYECO:0000099
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Recovery from nitrogen starvation: cells are first grown in minimal medium containing no nitrogen for 72h-7days. This medium is then replaced with nitrogen containing rich medium and cells are allowed to grow for 4-7 days.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrogen starvation and recovery","termid":"FYECO:0000110"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"72h-7days nitrogen starvation followed by 4-7 days recovery in rich medium","termid":"FYECO:0000099"}


id: PBO:0071865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 3","termid":"PBO:0071865"}


id: GO:0120291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that inhibits or decreases the rate of mitotic recombination-dependent replication fork processing. Suppression of recombination at replication forks is necessary to prevent template switching.","definition_xrefs":["PMID:28586299","PMID:31149897","GOC:krc","GOC:mah","PMID:30667359"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell cycle process","termid":"GO:0010948"},{"relation_name":"is_a","term_name":"negative regulation of DNA metabolic process","termid":"GO:0051053"},{"relation_name":"is_a","term_name":"regulation of mitotic recombination-dependent replication fork processing","termid":"GO:1903221"},{"relation_name":"negatively_regulates","term_name":"mitotic recombination-dependent replication fork processing","termid":"GO:1990426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0007049"],"is_obsolete":false,"name":"negative regulation of mitotic recombination-dependent replication fork processing","synonyms":[{"name":"maintenance of template fidelity during replication fork processing","type":"exact"},{"name":"negative regulation of mitotic recombination involved in replication fork processing","type":"related"},{"name":"negative regulation of template switch recombination involved in replication fork processing","type":"exact"},{"name":"suppression of template switching during replication fork processing","type":"exact"}],"termid":"GO:0120291"}


id: PBO:0071179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 20","termid":"PBO:0071179"}


id: PBO:0046816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid amide hydrolase","termid":"PBO:0046816"}


id: PBO:0081863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 799","termid":"PBO:0081863"}


id: PBO:0088453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetyl-CoA C-acetyltransferase Erg10","termid":"PBO:0088453"}


id: GO:1990406
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A transmembrane, G protein-coupled signaling receptor complex recognized by calcitonin gene-related peptides (CGRP).","definition_xrefs":["GOC:bhm","PMID:20826335"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcitonin family receptor complex","termid":"GO:1903439"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"CGRP receptor complex","synonyms":[{"name":"CGRP-R complex","type":"exact"},{"name":"Calcitonin-gene-related peptide receptor complex","type":"exact"},{"name":"calcitonin gene-related polypeptide receptor complex","type":"exact"}],"termid":"GO:1990406"}


id: PBO:0057167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 320d-1","termid":"PBO:0057167"}


id: GO:0015492
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: phenylalanine(out) + H+(out) = phenylalanine(in) + H+(in).","definition_xrefs":["TC:2.A.3.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid:proton symporter activity","termid":"GO:0005280"},{"relation_name":"is_a","term_name":"aromatic amino acid:proton symporter activity","termid":"GO:0015494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"phenylalanine:proton symporter activity","synonyms":[{"name":"phenylalanine:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015492"}


id: PBO:0109397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 24, pseudogene","termid":"PBO:0109397"}


id: PBO:0070964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18 pseudogene 2","termid":"PBO:0070964"}


id: PBO:0067854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 156","termid":"PBO:0067854"}


id: PBO:0028741
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_silver","termid":"PBO:0028741"}


id: PBO:0082086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase; synthesizes PRPP, which is required for nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes; PRS2 has a paralog, PRS4, that arose from the whole genome duplication","termid":"PBO:0082086"}


id: GO:0007179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by an extracellular ligand binding to a transforming growth factor beta receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:mah","GOC:signaling","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transforming growth factor beta receptor superfamily signaling pathway","termid":"GO:0141091"},{"relation_name":"part_of","term_name":"cellular response to transforming growth factor beta stimulus","termid":"GO:0071560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"transforming growth factor beta receptor signaling pathway","secondary_identifiers":["Reactome:R-HSA-170834"],"synonyms":[{"name":"TGF-beta receptor signaling pathway","type":"exact"},{"name":"TGF-beta receptor signalling pathway","type":"exact"},{"name":"TGFbeta receptor signaling pathway","type":"exact"},{"name":"TGFbeta receptor signalling pathway","type":"exact"},{"name":"transforming growth factor beta receptor signalling pathway","type":"exact"}],"termid":"GO:0007179"}


id: MONDO:0008603
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any isolated trigonocephaly in which the cause of the disease is a mutation in the FGFR1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isolated trigonocephaly","termid":"MONDO:0018065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"trigonocephaly 1","secondary_identifiers":["UMLS:C0432122","GARD:18558","MEDGEN:98473","OMIM:190440"],"synonyms":[{"name":"FGFR1 isolated trigonocephaly","type":"exact"},{"name":"TRIGNO1","type":"related"},{"name":"craniosynostosis, metopic","type":"related"},{"name":"isolated trigonocephaly caused by mutation in FGFR1","type":"exact"},{"name":"trigonocephaly 1","type":"exact"},{"name":"trigonocephaly type 1","type":"exact"}],"termid":"MONDO:0008603","xrefs":{"Monarch":{"xref_id":"0008603"}}}


id: PBO:0018033
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear PassenGer=","termid":"PBO:0018033"}


id: MONDO:1011992
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"vision disorder, non-human animal","termid":"MONDO:1011367"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital keratoconjunctivitis sicca and ichthyosiform dermatosis, non-human animal","secondary_identifiers":["OMIA:001683"],"termid":"MONDO:1011992","xrefs":{"Monarch":{"xref_id":"1011992"}}}


id: PR:Q10219
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC4H3.12c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10219"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C4H3.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4H3.12c","synonyms":[{"name":"Spom972h-SPAC4H3.12c","type":"exact"}],"termid":"PR:Q10219"}


id: MONDO:0100487
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A platelet disorder in which the cause of the disease is a variant in the TPM4 gene.","definition_xrefs":["PMID:34758189","PMID:28134622"],"direct_ancestors":[{"relation_name":"is_a","term_name":"blood platelet disease","termid":"MONDO:0002245"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"TPM4-related platelet disorder","synonyms":[{"name":"TPM4-related platelet dysfunction with or without thrombocytopenia","type":"exact"}],"termid":"MONDO:0100487","xrefs":{"Monarch":{"xref_id":"0100487"}}}


id: MONDO:0019476
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"primary cutaneous T-cell lymphoma","termid":"MONDO:0015758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0004992","MONDO:0005093"],"is_obsolete":false,"name":"primary cutaneous peripheral T-cell lymphoma not otherwise specified","secondary_identifiers":["UMLS:C0079774","GARD:19078","ICD10CM:C84.4","Orphanet:86885","MedDRA:10034623","MESH:D016411","MEDGEN:38240","NCIT:C201080"],"synonyms":[{"name":"primary cutaneous unspecified peripheral T-cell lymphoma","type":"exact"}],"termid":"MONDO:0019476","xrefs":{"Monarch":{"xref_id":"0019476"}}}


id: PBO:0087642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p); complex is localized to DNA replication origins and implicated in assembly of the DNA replication machinery","termid":"PBO:0087642"}


id: PBO:0043992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondroitin sulfate N-acetylgalactosaminyltransferase 2","termid":"PBO:0043992"}


id: GO:0046559
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an alpha-D-glucuronoside + H2O = an alcohol + D-glucuronate.","definition_xrefs":["EC:3.2.1.139"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016798","GO:0016787"],"is_obsolete":false,"name":"alpha-glucuronidase activity","secondary_identifiers":["MetaCyc:3.2.1.139-RXN","RHEA:20005"],"synonyms":[{"name":"alpha-D-glucosiduronate glucuronohydrolase activity","type":"related"},{"name":"alpha-glucosiduronase activity","type":"related"}],"termid":"GO:0046559"}


id: GO:0021660
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to rhombomere 3. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order.","definition_xrefs":["GOC:dgh","GOC:jid","GO_REF:0000021","GOC:curators","GOC:cls","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhombomere formation","termid":"GO:0021594"},{"relation_name":"part_of","term_name":"rhombomere 3 morphogenesis","termid":"GO:0021658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rhombomere 3 formation","termid":"GO:0021660"}


id: PBO:0045893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 gamma pseudogene 5","termid":"PBO:0045893"}


id: PBO:0039446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat and IBR domain containing 1","termid":"PBO:0039446"}


id: GO:0048397
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of intermediate mesoderm cell fate determination.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mesodermal cell fate determination","termid":"GO:0048336"},{"relation_name":"is_a","term_name":"regulation of intermediate mesodermal cell fate determination","termid":"GO:0048395"},{"relation_name":"positively_regulates","term_name":"intermediate mesodermal cell fate determination","termid":"GO:0048394"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of intermediate mesodermal cell fate determination","synonyms":[{"name":"activation of intermediate mesodermal cell fate determination","type":"narrow"},{"name":"stimulation of intermediate mesodermal cell fate determination","type":"narrow"},{"name":"up regulation of intermediate mesodermal cell fate determination","type":"exact"},{"name":"up-regulation of intermediate mesodermal cell fate determination","type":"exact"},{"name":"upregulation of intermediate mesodermal cell fate determination","type":"exact"}],"termid":"GO:0048397"}


id: MONDO:0016943
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chromosome 6p duplication is a chromosome abnormality that occurs when there is an extra copy of genetic material on the short arm (p) of chromosome 6. The severity of the condition and the signs and symptoms depend on the size and location of the duplication and which genes are involved. Features that often occur in people with chromosome 6p duplication include developmental delay, intellectual disability, behavioral problems and distinctive facial features. This condition can occur sporadically or be inherited from a parent who is either mildy affected (has the deletion) or carries a balanced translocation. Treatment is based on the signs and symptoms present in each person.","definition_xrefs":["GARD:0005352"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial duplication of chromosome 6","termid":"MONDO:0016927"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial duplication of the short arm of chromosome 6","secondary_identifiers":["MEDGEN:1826043","MESH:C537811","Orphanet:262740","GARD:5352","icd11.foundation:657610285","UMLS:C5679721"],"synonyms":[{"name":"6p duplication","type":"related"},{"name":"6p trisomy","type":"related"},{"name":"Duplication 6p","type":"related"},{"name":"chromosome 6p duplication","type":"related"},{"name":"partial duplication of chromosome 6p","type":"exact"},{"name":"partial duplication of the short arm of chromosome type 6","type":"exact"},{"name":"partial trisomy 6p","type":"related"},{"name":"partial trisomy of chromosome 6p","type":"exact"},{"name":"partial trisomy of the short arm of chromosome 6","type":"exact"},{"name":"trisomy 6p","type":"related"}],"termid":"MONDO:0016943","xrefs":{"Monarch":{"xref_id":"0016943"}}}


id: PBO:0060212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multivesicular body subunit 12B","termid":"PBO:0060212"}


id: PBO:0055243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2670","termid":"PBO:0055243"}


id: PBO:0078054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 44","termid":"PBO:0078054"}


id: PBO:0068622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 2","termid":"PBO:0068622"}


id: GO:0120151
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of mitotic actomyosin contractile ring disassembly.","definition_xrefs":["PMID:19109423"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of mitotic actomyosin contractile ring disassembly (obsolete GO:0120151)","termid":"GO:0120151"}


id: GO:2000106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of leukocyte apoptotic process.","definition_xrefs":["GOC:BHF","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic process","termid":"GO:0042981"},{"relation_name":"regulates","term_name":"leukocyte apoptotic process","termid":"GO:0071887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of leukocyte apoptotic process","synonyms":[{"name":"regulation of leukocyte apoptosis","type":"narrow"}],"termid":"GO:2000106"}


id: GO:0004750
data:
  {"annotated_genes":["SJAG_00501"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75535],"is_not":false,"summary":null,"term":"GO:0004750"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-ribulose 5-phosphate = D-xylulose 5-phosphate.","definition_xrefs":["RHEA:13677","EC:5.1.3.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00501":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"D-ribulose-phosphate 3-epimerase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["KEGG_REACTION:R01529","Reactome:R-HSA-71303","MetaCyc:RIBULP3EPIM-RXN","Reactome:R-HSA-199803"],"synonyms":[{"name":"D-ribulose 5-phosphate epimerase activity","type":"related"},{"name":"D-ribulose phosphate-3-epimerase activity","type":"related"},{"name":"D-ribulose-5-P 3-epimerase activity","type":"related"},{"name":"D-ribulose-5-phosphate 3-epimerase activity","type":"related"},{"name":"D-ribulose-5-phosphate epimerase activity","type":"related"},{"name":"D-xylulose-5-phosphate 3-epimerase activity","type":"related"},{"name":"erythrose-4-phosphate epimerase activity","type":"related"},{"name":"erythrose-4-phosphate isomerase activity","type":"related"},{"name":"pentose phosphate epimerase (PPE)","type":"related"},{"name":"pentose-5-phosphate 3-epimerase activity","type":"related"},{"name":"phosphoketopentose 3-epimerase activity","type":"related"},{"name":"phosphoketopentose epimerase activity","type":"related"},{"name":"phosphoribulose epimerase activity","type":"related"},{"name":"ribulose 5-phosphate 3-epimerase activity","type":"related"},{"name":"ribulose-phosphate 3-epimerase activity","type":"related"},{"name":"xylulose phosphate 3-epimerase activity","type":"related"}],"termid":"GO:0004750","terms_by_termid":{"GO:0004750":null}}


id: PBO:0055073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2490","termid":"PBO:0055073"}


id: PR:Q02953
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hsf1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q02953"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock factor protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2E12.02","synonyms":[{"name":"HSF (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"HSTF (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-hsf1","type":"exact"},{"name":"heat shock transcription factor (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q02953"}


id: MONDO:0009801
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial osteodysplasia, Anderson type is a rare, genetic dysostosis disorder characterized by craniofacial bone abnormalities (i.e. midface hypoplasia, broad, flat nasal bridge, narrow, thin prognathic mandible with pointed chin, malocclusion, partial dental agenesis) associated with additional osseous anomalies, including scoliosis, calvarial thinning, pointed spinous processes, clinodactyly and abnormal phalanges. Elevated erythrocyte sedimentation rate, hyperuricemia and hypertension have also been reported. There have been no further descriptions in the literature since 1982.","definition_xrefs":["Orphanet:2769"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial osteodysplasia, Anderson type","secondary_identifiers":["OMIM:259250","UMLS:C1850186","GARD:4136","icd11.foundation:107132680","MEDGEN:337990","MESH:C564923"],"synonyms":[{"name":"osteodysplasia familial Anderson type","type":"related"},{"name":"osteodysplasia, familial, Anderson type","type":"related"}],"termid":"MONDO:0009801","xrefs":{"Monarch":{"xref_id":"0009801"}}}


id: GO:0060367
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the sagittal suture is generated and organized.","definition_xrefs":["GOC:sl","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial suture morphogenesis","termid":"GO:0060363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sagittal suture morphogenesis","termid":"GO:0060367"}


id: GO:0008991
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage of a signal peptide from a protein precursor by a serine endopeptidase mechanism.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete serine-type signal peptidase activity (obsolete GO:0008991)","synonyms":[{"name":"serine-type signal peptidase activity","type":"exact"}],"termid":"GO:0008991"}


id: PBO:0002087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein Nop12 (predicted)","termid":"PBO:0002087"}


id: GO:0098590
data:
  {"annotated_genes":["SJAG_01437","SJAG_02351","SJAG_01189","SJAG_04358","SJAG_01388","SJAG_01983","SJAG_01794","SJAG_02572","SJAG_03608","SJAG_04905","SJAG_02258","SJAG_02684","SJAG_04714","SJAG_04001","SJAG_02924","SJAG_02989","SJAG_01114","SJAG_05285","SJAG_01888","SJAG_01738","SJAG_01660","SJAG_04620","SJAG_04637","SJAG_00514","SJAG_03536","SJAG_02916","SJAG_01978","SJAG_03915","SJAG_00368","SJAG_04668","SJAG_01353","SJAG_04673","SJAG_02222","SJAG_04509","SJAG_04167","SJAG_01345"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[108992,117811,89736,91726,94273,101676,108052],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032154"},{"annotations":[89846,93158],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0090689"},{"annotations":[108543],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0106186"},{"annotations":[89997,100893],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070250"},{"annotations":[98277,112169],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070867"},{"annotations":[103717,112841,119221,90138,98954,117470,91733,94371,114333,117818,95356,104944,98906,97425,89999,89745,110409,111412,94279,94590,102601,116381],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031520"},{"annotations":[79838],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902929"},{"annotations":[120559,90306,105187,91203],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044853"}]},"cv_name":"cellular_component","definition":"A membrane that is a (regional) part of the plasma membrane.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane","termid":"GO:0016020"},{"relation_name":"part_of","term_name":"plasma membrane","termid":"GO:0005886"}],"gene_count":36,"genes_by_uniquename":{"SJAG_00368":null,"SJAG_00514":null,"SJAG_01114":null,"SJAG_01189":null,"SJAG_01345":null,"SJAG_01353":null,"SJAG_01388":null,"SJAG_01437":null,"SJAG_01660":null,"SJAG_01738":null,"SJAG_01794":null,"SJAG_01888":null,"SJAG_01978":null,"SJAG_01983":null,"SJAG_02222":null,"SJAG_02258":null,"SJAG_02351":null,"SJAG_02572":null,"SJAG_02684":null,"SJAG_02916":null,"SJAG_02924":null,"SJAG_02989":null,"SJAG_03536":null,"SJAG_03608":null,"SJAG_03915":null,"SJAG_04001":null,"SJAG_04167":null,"SJAG_04358":null,"SJAG_04509":null,"SJAG_04620":null,"SJAG_04637":null,"SJAG_04668":null,"SJAG_04673":null,"SJAG_04714":null,"SJAG_04905":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"plasma membrane region","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"region of plasma membrane","type":"exact"}],"termid":"GO:0098590","terms_by_termid":{"GO:0031520":null,"GO:0032154":null,"GO:0044853":null,"GO:0070250":null,"GO:0070867":null,"GO:0090689":null,"GO:0106186":null,"GO:1902929":null}}


id: GO:0000827
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + 1D-myo-inositol 1,3,4,5,6-pentakisphosphate = ADP + diphospho-1D-myo-inositol tetrakisphosphate. The isomeric configuration of diphospho-1D-myo-inositol tetrakisphosphate is unknown.","definition_xrefs":["PMID:11311242","GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, phosphate group as acceptor","termid":"GO:0016776"},{"relation_name":"is_a","term_name":"inositol phosphate kinase activity","termid":"GO:0180030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016301","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"inositol-1,3,4,5,6-pentakisphosphate kinase activity","secondary_identifiers":["Reactome:R-HSA-1855181","Reactome:R-HSA-1855223"],"termid":"GO:0000827"}


id: FYPO:0007545
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which one or more proteins is localized to the mitotic nuclear bridge for a longer time than normal.","definition_xrefs":["PMID:32502403","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to nucleus during vegetative growth","termid":"FYPO:0001129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"increased duration of protein localization to mitotic nuclear bridge","synonyms":[{"name":"increased duration of protein localisation to mitotic nuclear bridge","type":"exact"},{"name":"increased duration of protein localization to mitotic nuclear bridge during mitotic anaphase B","type":"exact"},{"name":"increased duration of protein localization to mitotic nuclear bridge during mitotic cell cycle","type":"related"},{"name":"increased duration of protein localization to mitotic nuclear bridge during vegetative growth","type":"exact"},{"name":"prolonged protein localization to mitotic nuclear bridge","type":"exact"}],"termid":"FYPO:0007545"}


id: PBO:0004306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hira protein Slm9","termid":"PBO:0004306"}


id: GO:0046965
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a nuclear retinoid X receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear retinoic acid receptor binding","termid":"GO:0042974"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"nuclear retinoid X receptor binding","synonyms":[{"name":"RXR binding","type":"exact"},{"name":"retinoid X receptor binding","type":"broad"}],"termid":"GO:0046965"}


id: PBO:0084637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mevalonate kinase; acts in the biosynthesis of isoprenoids and sterols, including ergosterol, from mevalonate; human MVK functionally complements the lethality of the erg12 null mutation","termid":"PBO:0084637"}


id: SO:1000127
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000127 sequence_variant_causing_compensatory_transcript_secondary_structure_mutation (obsolete SO:1000127)","synonyms":[{"name":"mutation causing compensatory transcript secondary structure mutation","type":"related"},{"name":"sequence variant causing compensatory transcript secondary structure mutation","type":"exact"}],"termid":"SO:1000127"}


id: PBO:0004107
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"region specific activator of recombination","termid":"PBO:0004107"}


id: MONDO:0020950
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections of the eye caused by minute intracellular agents. These infections may lead to severe inflammation in various parts of the eye - conjunctiva, iris, eyelids, etc. Several viruses have been identified as the causative agents. Among these are Herpesvirus, Adenovirus, Poxvirus, and Myxovirus.","definition_xrefs":["MESH:D015828"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral infectious disease","termid":"MONDO:0005108"},{"relation_name":"is_a","term_name":"eye infectious disorder","termid":"MONDO:0043885"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"viral eye infection","secondary_identifiers":["MEDGEN:8753","SCTID:312132001","UMLS:C0015407"],"synonyms":[{"name":"EYE INFECT VIRAL","type":"related"},{"name":"Eye Infection, Viral","type":"related"},{"name":"Eye Infections, Viral","type":"related"},{"name":"Infection, Viral Eye","type":"related"},{"name":"Infection, Viral Ocular","type":"related"},{"name":"Infections, Viral Eye","type":"related"},{"name":"Infections, Viral Ocular","type":"related"},{"name":"OCULAR INFECT VIRAL","type":"related"},{"name":"Ocular Infection, Viral","type":"related"},{"name":"Ocular Infections, Viral","type":"related"},{"name":"VIRAL EYE INFECT","type":"related"},{"name":"Viral Eye Infection","type":"related"},{"name":"Viral Eye Infections","type":"related"},{"name":"Viral Ocular Infection","type":"related"},{"name":"Viral Ocular Infections","type":"related"},{"name":"Viral eye infection","type":"related"},{"name":"viral eye infection","type":"exact"}],"termid":"MONDO:0020950","xrefs":{"Monarch":{"xref_id":"0020950"}}}


id: PBO:0030440
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_tRNA_modification","termid":"PBO:0030440"}


id: GO:0030811
data:
  {"annotated_genes":["SJAG_02785","SJAG_05314","SJAG_00685"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77912,74846],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045820"},{"annotations":[71770],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006110"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nucleotide metabolic process","termid":"GO:0006140"},{"relation_name":"is_a","term_name":"regulation of catabolic process","termid":"GO:0009894"},{"relation_name":"regulates","term_name":"nucleotide catabolic process","termid":"GO:0009166"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00685":null,"SJAG_02785":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"regulation of nucleotide catabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"regulation of nucleotide breakdown","type":"exact"},{"name":"regulation of nucleotide catabolism","type":"exact"},{"name":"regulation of nucleotide degradation","type":"exact"}],"termid":"GO:0030811","terms_by_termid":{"GO:0006110":null,"GO:0045820":null}}


id: MONDO:0018601
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"bone disorder","termid":"MONDO:0005381"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autosomal dominant myopia-midfacial retrusion-sensorineural hearing loss-rhizomelic dysplasia syndrome","secondary_identifiers":["MEDGEN:1801714","UMLS:C5680056","Orphanet:440354","GARD:21838"],"termid":"MONDO:0018601","xrefs":{"Monarch":{"xref_id":"0018601"}}}


id: GO:0007100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Separation of duplicated centrosome components at the beginning of mitosis. The centriole pair within each centrosome becomes part of a separate microtubule organizing center that nucleates a radial array of microtubules called an aster. The two asters move to opposite sides of the nucleus to form the two poles of the mitotic spindle.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"centrosome separation","termid":"GO:0051299"},{"relation_name":"is_a","term_name":"mitotic cell cycle process","termid":"GO:1903047"},{"relation_name":"part_of","term_name":"mitotic nuclear division","termid":"GO:0140014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0000226","GO:0007010"],"is_obsolete":false,"name":"mitotic centrosome separation","termid":"GO:0007100"}


id: GO:0010379
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phaseic acid (PA), a catabolite of the plant hormone abscisic acid (ABA).","definition_xrefs":["MetaCyc:PWY-5271"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpenoid biosynthetic process","termid":"GO:0016106"},{"relation_name":"is_a","term_name":"apocarotenoid biosynthetic process","termid":"GO:0043289"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"phaseic acid biosynthetic process","termid":"GO:0010379"}


id: GO:0003949
data:
  {"annotated_genes":["SJAG_01346"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72896],"is_not":false,"summary":null,"term":"GO:0003949"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide = 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide.","definition_xrefs":["EC:5.3.1.16","RHEA:15469"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, interconverting aldoses and ketoses","termid":"GO:0016861"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["KEGG_REACTION:R04640","MetaCyc:PRIBFAICARPISOM-RXN"],"synonyms":[{"name":"1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide aldose-ketose-isomerase activity","type":"related"},{"name":"1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide ketol-isomerase activity","type":"related"},{"name":"N-(5'-phospho-D-ribosylformimino)-5-amino-1-(5''-phosphoribosyl)-4-imidazolecarboxamide isomerase activity","type":"related"},{"name":"N-(phosphoribosylformimino) aminophosphoribosylimidazolecarboxamide isomerase activity","type":"related"},{"name":"phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase activity","type":"related"},{"name":"phosphoribosylformiminoaminophosphoribosylimidazolecarboxamide isomerase activity","type":"related"}],"termid":"GO:0003949","terms_by_termid":{"GO:0003949":null}}


id: MONDO:0004362
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete placenta disease (obsolete MONDO:0004362)","termid":"MONDO:0004362","xrefs":{"Monarch":{"xref_id":"0004362"}}}


id: PBO:0058371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4743","termid":"PBO:0058371"}


id: PBO:0109013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSX family member 14, pseudogene","termid":"PBO:0109013"}


id: GO:0036313
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to the catalytic subunit of a phosphatidylinositol 3-kinase. The catalytic subunit catalyzes the addition of a phosphate group to an inositol lipid at the 3' position of the inositol ring.","definition_xrefs":["GOC:bf","PMID:17475214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase binding","termid":"GO:0019900"},{"relation_name":"is_a","term_name":"phosphatidylinositol 3-kinase binding","termid":"GO:0043548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"phosphatidylinositol 3-kinase catalytic subunit binding","synonyms":[{"name":"PI3K catalytic subunit binding","type":"exact"},{"name":"p110 binding","type":"related"}],"termid":"GO:0036313"}


id: PBO:0049994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeodomain interacting protein kinase 1","termid":"PBO:0049994"}


id: FYPO:0004303
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which a phosphatase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal phosphatase activity","termid":"FYPO:0004302"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000707","FYPO:0000652","FYPO:0001985","FYPO:0000654"],"is_obsolete":false,"name":"abolished phosphatase activity","synonyms":[{"name":"phosphatase activity abolished","type":"exact"}],"termid":"FYPO:0004303"}


id: PBO:0079415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta 8 class VIII pseudogene 9","termid":"PBO:0079415"}


id: PR:O59755
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cut12 gene.","definition_xrefs":["UniProtKB:O59755","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spindle pole body-associated protein cut12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC649.05","synonyms":[{"name":"Spom972h-cut12","type":"exact"},{"name":"cell untimely torn protein 12 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59755"}


id: GO:0103060
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: kaempferol-3-rhamnoside + UDP-L-rhamnose = kaempferol-3-rhamnoside-7-rhamnoside + UDP.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete kaempferol 3-rhamnoside 7-O-rhamnosyltransferase activity (obsolete GO:0103060)","termid":"GO:0103060"}


id: GO:0000953
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving the catabolism of amino acids to produce carboxylic acids with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When a branched chain family amino acid, leucine, isoleucine, or valine, is used as the substrate, 3-methylbutanoate, 2-methylbutanoate, or 2-methylpropanoate, respectively, is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of carboxylic acids, sometimes collectively referred to as fusel acids. Depending on the redox state of the cells, alcohol derivatives may be produced instead of carboxylic acids.","definition_xrefs":["GOC:krc","PMID:18281432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid catabolic process to carboxylic acid via Ehrlich pathway","termid":"GO:0000948"},{"relation_name":"is_a","term_name":"branched-chain amino acid catabolic process","termid":"GO:0009083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"branched-chain amino acid catabolic process to carboxylic acid via Ehrlich pathway","synonyms":[{"name":"branched chain family amino acid catabolic process to carboxylic acid via Ehrlich pathway","type":"exact"}],"termid":"GO:0000953"}


id: PomGeneEx:0000015
data:
  {"annotation_feature_type":"gene","cv_name":"PomGeneExRNA","definition":"A gene expression qualifier that indicates that an RNA is not detectable under a given set of conditions or at an indicated time.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"absent","termid":"PomGeneEx:0000006"},{"relation_name":"is_a","term_name":"RNA expression level","termid":"PomGeneEx:0000009"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA absent","synonyms":[{"name":"RNA expression absent","type":"exact"}],"termid":"PomGeneEx:0000015"}


id: MONDO:0021060
data:
  {"annotated_genes":["SJAG_01181","SJAG_00993","SJAG_02536","SJAG_03126","SJAG_03453","SJAG_02342","SJAG_02923"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86833],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014112"},{"annotations":[86836,86834,86835],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014113"},{"annotations":[86839,86840,86841],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014114"},{"annotations":[87012],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009026"},{"annotations":[89118,89119,89117],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008104"},{"annotations":[87599],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0033669"},{"annotations":[88484],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012371"},{"annotations":[88274],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013186"},{"annotations":[87336,87337],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054588"}]},"cv_name":"mondo","definition":"Developmental syndromes caused by germline mutations (or in rare cases by somatic mosaicism) in genes that alter the Ras subfamily and mitogen-activated protein kinases that control signal transduction.","definition_xrefs":["Wikipedia:RASopathy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00993":null,"SJAG_01181":null,"SJAG_02342":null,"SJAG_02536":null,"SJAG_02923":null,"SJAG_03126":null,"SJAG_03453":null},"genotype_count":0,"is_obsolete":false,"name":"RASopathy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5555857","DOID:0080690","EFO:1001502","GARD:22213","NCIT:C179667","MEDGEN:1792298","Orphanet:536391"],"synonyms":[{"name":"RASopathy","type":"exact"},{"name":"Ras protein signal transduction disease","type":"exact"},{"name":"disorder of Ras protein signal transduction","type":"exact"}],"termid":"MONDO:0021060","terms_by_termid":{"MONDO:0008104":null,"MONDO:0009026":null,"MONDO:0012371":null,"MONDO:0013186":null,"MONDO:0014112":null,"MONDO:0014113":null,"MONDO:0014114":null,"MONDO:0033669":null,"MONDO:0054588":null},"xrefs":{"Monarch":{"xref_id":"0021060"}}}


id: MONDO:0026157
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete genetic pigmentation anomaly of the skin (obsolete MONDO:0026157)","secondary_identifiers":["Orphanet:183463"],"termid":"MONDO:0026157","xrefs":{"Monarch":{"xref_id":"0026157"}}}


id: GO:0033053
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving D-glutamine, the D-enantiomer of the amino acid glutamine, i.e. (2R)-2,5-diamino-5-oxopentanoic acid.","definition_xrefs":["GOC:jsg","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamine metabolic process","termid":"GO:0006541"},{"relation_name":"is_a","term_name":"D-amino acid metabolic process","termid":"GO:0046416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"D-glutamine metabolic process","synonyms":[{"name":"D-glutamine metabolism","type":"exact"}],"termid":"GO:0033053"}


id: GO:0140702
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to cyclic GMP-AMP (cGAMP) nucleotide.","definition_xrefs":["PMID:23258412"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclic nucleotide binding","termid":"GO:0030551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"cyclic GMP-AMP binding","termid":"GO:0140702"}


id: PBO:0004750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c heme lyase (predicted)","termid":"PBO:0004750"}


id: GO:0005937
data:
  {"annotated_genes":["SJAG_01943","SJAG_02222","SJAG_03357","SJAG_04887","SJAG_04982","SJAG_02718","SJAG_04470","SJAG_03011","SJAG_02228","SJAG_00514","SJAG_01888","SJAG_03453","SJAG_03646","SJAG_03596","SJAG_04781","SJAG_01171","SJAG_02169","SJAG_00185","SJAG_00677","SJAG_04723","SJAG_02351","SJAG_04509","SJAG_03688","SJAG_01769","SJAG_03145","SJAG_05001","SJAG_00663","SJAG_01978","SJAG_04703","SJAG_00938","SJAG_04001","SJAG_00870","SJAG_01794","SJAG_01215","SJAG_01017","SJAG_04100","SJAG_02486","SJAG_00279","SJAG_01732","SJAG_05285","SJAG_03444","SJAG_02379","SJAG_01993","SJAG_04901","SJAG_00667","SJAG_02989","SJAG_00700","SJAG_02700","SJAG_02924"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[113348],"is_not":false,"summary":null,"term":"GO:0005937"},{"annotations":[102070,121162,95901,92713,110029,113299,90960,116621,110090,90136,97267,118175,103873,103872,95705,94391,101467],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990819"},{"annotations":[100893,89997],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070250"},{"annotations":[117968,102033,107961,96394],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032175"},{"annotations":[109115,116319,94464,117815,92588,78087,71899,108814,98775,75713,73942,89742,79563,92542,105183,80492,100808,108055,110817,99633,77338,111027,99827],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0043332"},{"annotations":[112169,98277],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070867"}]},"cv_name":"cellular_component","definition":"The projection formed by unicellular fungi in response to mating pheromone.","definition_xrefs":["GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection","termid":"GO:0120025"}],"gene_count":49,"genes_by_uniquename":{"SJAG_00185":null,"SJAG_00279":null,"SJAG_00514":null,"SJAG_00663":null,"SJAG_00667":null,"SJAG_00677":null,"SJAG_00700":null,"SJAG_00870":null,"SJAG_00938":null,"SJAG_01017":null,"SJAG_01171":null,"SJAG_01215":null,"SJAG_01732":null,"SJAG_01769":null,"SJAG_01794":null,"SJAG_01888":null,"SJAG_01943":null,"SJAG_01978":null,"SJAG_01993":null,"SJAG_02169":null,"SJAG_02222":null,"SJAG_02228":null,"SJAG_02351":null,"SJAG_02379":null,"SJAG_02486":null,"SJAG_02700":null,"SJAG_02718":null,"SJAG_02924":null,"SJAG_02989":null,"SJAG_03011":null,"SJAG_03145":null,"SJAG_03357":null,"SJAG_03444":null,"SJAG_03453":null,"SJAG_03596":null,"SJAG_03646":null,"SJAG_03688":null,"SJAG_04001":null,"SJAG_04100":null,"SJAG_04470":null,"SJAG_04509":null,"SJAG_04703":null,"SJAG_04723":null,"SJAG_04781":null,"SJAG_04887":null,"SJAG_04901":null,"SJAG_04982":null,"SJAG_05001":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"mating projection","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:36148799":null},"synonyms":[{"name":"conjugation tube","type":"narrow"},{"name":"shmoo","type":"narrow"}],"termid":"GO:0005937","terms_by_termid":{"GO:0005937":null,"GO:0032175":null,"GO:0043332":null,"GO:0070250":null,"GO:0070867":null,"GO:1990819":null}}


id: GO:0050085
data:
  {"annotated_genes":["SJAG_05033"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[69896],"is_not":false,"summary":null,"term":"GO:0050085"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-mannitol + NADP+ = D-fructose + H+ + NADPH.","definition_xrefs":["EC:1.1.1.138","RHEA:16765"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05033":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"mannitol 2-dehydrogenase (NADP+) activity","references_by_uniquename":{"GO_REF:0000117":null},"secondary_identifiers":["MetaCyc:MANNITOL-2-DEHYDROGENASE-NADP+-RXN","KEGG_REACTION:R00870"],"synonyms":[{"name":"D-mannitol:NADP+ 2-oxidoreductase activity","type":"related"},{"name":"NADP-dependent mannitol dehydrogenase activity","type":"related"}],"termid":"GO:0050085","terms_by_termid":{"GO:0050085":null}}


id: MONDO:0035511
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare disorder due to poisoning characterized by acute onset of potentially life-threatening illness following ingestion, inhalation, or injection of ricin, a lectin present in the seeds of <i>Ricinus communis</i>, the castor oil plant. Clinical presentation depends on the route of administration, inhalation being the most toxic route, followed by oral ingestion. Presenting signs and symptoms include nausea, vomiting, diarrhea, hematemesis, and melena (upon ingestion), cough, wheezing, dyspnea, sore throat, and congestion (upon inhalation), and erythema, induration, blisters, capillary leak syndrome, and localized necrosis (upon injection). The condition can progress to seizures, shock, organ failure, pulmonary edema, and respiratory failure.","definition_xrefs":["Orphanet:570470"],"direct_ancestors":[{"relation_name":"is_a","term_name":"poisoning","termid":"MONDO:0029000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ricin poisoning","secondary_identifiers":["ICD10CM:T62.2","GARD:22311"],"termid":"MONDO:0035511","xrefs":{"Monarch":{"xref_id":"0035511"}}}


id: GO:0016695
data:
  {"annotated_genes":["SJAG_02497"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[116764],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008901"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which hydrogen acts as an electron donor.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02497":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"oxidoreductase activity, acting on hydrogen as donor","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.12.-.-"],"synonyms":[{"name":"oxidoreductase activity, acting on hydrogen as donor, other acceptors","type":"narrow"}],"termid":"GO:0016695","terms_by_termid":{"GO:0008901":null}}


id: GO:0009984
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: substrate + ATP = substrate-AMP + diphosphate.","definition_xrefs":["PMID:12084835"],"gene_count":0,"genotype_count":0,"name":"obsolete adenylate forming enzyme activity (obsolete GO:0009984)","synonyms":[{"name":"adenylate forming enzyme activity","type":"exact"}],"termid":"GO:0009984"}


id: PBO:0030318
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_oleoyl-CoA_ligase_activity","termid":"PBO:0030318"}


id: PBO:0074445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small integral membrane protein 46","termid":"PBO:0074445"}


id: GO:0004832
data:
  {"annotated_genes":["SJAG_02428","SJAG_00443"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71604,71832],"is_not":false,"summary":null,"term":"GO:0004832"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-valine + ATP + tRNA(Val) = L-valyl-tRNA(Val) + AMP + diphosphate + 2 H+.","definition_xrefs":["RHEA:10704","EC:6.1.1.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00443":null,"SJAG_02428":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140098","GO:0140101","GO:0016874","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"valine-tRNA ligase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-380042","MetaCyc:VALINE--TRNA-LIGASE-RXN","KEGG_REACTION:R03665","Reactome:R-HSA-380199"],"synonyms":[{"name":"L-valine:tRNAVal ligase (AMP-forming)","type":"related"},{"name":"valine transfer ribonucleate ligase activity","type":"related"},{"name":"valine translase activity","type":"related"},{"name":"valyl-tRNA synthetase activity","type":"exact"},{"name":"valyl-transfer RNA synthetase activity","type":"related"},{"name":"valyl-transfer ribonucleate synthetase activity","type":"related"},{"name":"valyl-transfer ribonucleic acid synthetase activity","type":"related"}],"termid":"GO:0004832","terms_by_termid":{"GO:0004832":null}}


id: PBO:0016883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces pombe specific protein Isp3","termid":"PBO:0016883"}


id: MONDO:1011336
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Nervous system disorder that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-human animal disease","termid":"MONDO:0005583"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nervous system disorder, non-human animal","termid":"MONDO:1011336","xrefs":{"Monarch":{"xref_id":"1011336"}}}


id: MONDO:0018101
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial primary hypomagnesemia with normocalciuria and normocalcemia (FPHNN) is a form of familial primary hypomagnesemia (FPH), characterized by low serum magnesium (Mg) values but inappropriate normal urinary Mg values (i.e. renal hypomagnesemia). The typical symptoms are weakness of the limbs, vertigo, headaches, seizures, brisk tendon reflexes and mild to moderate psychomotor delay.","definition_xrefs":["Orphanet:34527"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial primary hypomagnesemia with normocalcuria","termid":"MONDO:0017626"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005240"],"is_obsolete":false,"name":"familial primary hypomagnesemia with normocalciuria and normocalcemia","secondary_identifiers":["SCTID:725031005","UMLS:C4510731","MEDGEN:1390277"],"termid":"MONDO:0018101","xrefs":{"Monarch":{"xref_id":"0018101"}}}


id: PBO:0068257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 45S pre-ribosomal 4","termid":"PBO:0068257"}


id: RO:HOM0000033
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Convergence that results from co-evolution usually involving an evolutionary arms race.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_convergence_relationship_with","termid":"RO:HOM0000004"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_mimicry_relationship_with","synonyms":[{"name":"mimicrous to","type":"exact"}],"termid":"RO:HOM0000033"}


id: FYPO:0000364
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the plasma membrane is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal plasma membrane during vegetative growth","termid":"FYPO:0003278"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal plasma membrane morphology during vegetative growth","synonyms":[{"name":"abnormal plasma membrane morphology during mitotic cell cycle","type":"related"},{"name":"plasma membrane morphology: abnormal","type":"related"}],"termid":"FYPO:0000364"}


id: MONDO:0022007
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition resulting from the excessive retention of water with sodium depletion.","definition_xrefs":["MESH:D014869"],"direct_ancestors":[{"relation_name":"is_a","term_name":"poisoning","termid":"MONDO:0029000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"water intoxication","secondary_identifiers":["UMLS:C0043049","MEDGEN:53061","SCTID:71785001"],"synonyms":[{"name":"WATER INTOX","type":"related"},{"name":"Water Intoxication","type":"related"},{"name":"Water intoxication","type":"related"},{"name":"Water intoxication syndrome","type":"related"},{"name":"water intoxication syndrome","type":"exact"}],"termid":"MONDO:0022007","xrefs":{"Monarch":{"xref_id":"0022007"}}}


id: PBO:0089946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S33","termid":"PBO:0089946"}


id: PBO:0005405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi transport protein Got1 (predicted)","termid":"PBO:0005405"}


id: GO:0071987
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a WD40 repeat domain of a protein. The WD40 repeat is a short structural motif of approximately 40 amino acids, often terminating in a tryptophan-aspartic acid (W-D) dipeptide. Several of these repeats are combined to form a type of protein domain called the WD domain.","definition_xrefs":["InterPro:IPR017986","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"WD40-repeat domain binding","synonyms":[{"name":"WD domain binding","type":"exact"},{"name":"beta-transducin repeat domain binding","type":"exact"}],"termid":"GO:0071987"}


id: GO:0044410
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Penetration by a symbiont into a host organism via naturally occurring openings in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:cc"],"gene_count":0,"genotype_count":0,"name":"obsolete entry into host through natural portals (obsolete GO:0044410)","synonyms":[{"name":"entry into other organism through natural portals during symbiotic interaction","type":"related"},{"name":"entry into other organism through natural portals involved in symbiotic interaction","type":"related"}],"termid":"GO:0044410"}


id: PBO:0015239
data:
  {"annotation_feature_type":"gene","cv_name":"subunit_composition","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homomeric(8)","termid":"PBO:0015239"}


id: PBO:0036104
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_transport_on_microtubule_tip_to_cell_tip_cortex_during_vegetative_growth","termid":"PBO:0036104"}


id: PBO:0017674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial methionyl-tRNA formyltransferase Fmt1 (predicted)","termid":"PBO:0017674"}


id: PBO:0056214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member B16","termid":"PBO:0056214"}


id: PBO:0038272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase allele types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino_acid_deletion_and_mutation","termid":"PBO:0038272"}


id: PBO:0048707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine receptor alpha 4 (pseudogene)","termid":"PBO:0048707"}


id: MONDO:0006061
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A tear within the wall of any of the arteries of the neck (carotid artery or vertebral artery) and that allows blood to separate the wall layers. By separating a portion of the wall of the artery (a layer of the Tunica intima or tunica media), a dissection creates two lumens or passages within the vessel, the native or true lumen, and the \\\"false lumen\\\" created by the new space within the wall of the artery.","definition_xrefs":["EFO:1000059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arterial disorder","termid":"MONDO:0000473"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervical artery dissection","secondary_identifiers":["MEDGEN:1709179","UMLS:C5396999"],"termid":"MONDO:0006061","xrefs":{"Monarch":{"xref_id":"0006061"}}}


id: MONDO:0054724
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 20","secondary_identifiers":["OMIM:617593","DOID:0070166","GARD:18404","MEDGEN:1621256","UMLS:C4539824"],"synonyms":[{"name":"SPGF20","type":"related"},{"name":"spermatogenic failure 20","type":"exact"}],"termid":"MONDO:0054724","xrefs":{"Monarch":{"xref_id":"0054724"}}}


id: GO:0097652
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A phosphatidylinositol 3-kinase complex that contains a catalytic subunit of a phosphatidylinositol 3-kinase (PI3K) enzyme and one or more adaptor proteins. There is no known obligatory regulatory subunit. The class II PI3K (PI3KC2) subfamily of genes has members in vertebrates, worm and fly, but none in yeast.","definition_xrefs":["GOC:ha","PMID:24587488"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol 3-kinase complex","termid":"GO:0005942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"phosphatidylinositol 3-kinase complex, class II","synonyms":[{"name":"class II PI3K complex","type":"exact"},{"name":"class II phosphatidylinositol 3-kinase complex","type":"exact"}],"termid":"GO:0097652"}


id: GO:0004397
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-histidine = urocanate + NH3.","definition_xrefs":["EC:4.3.1.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ammonia-lyase activity","termid":"GO:0016841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"histidine ammonia-lyase activity","secondary_identifiers":["Reactome:R-HSA-70899","MetaCyc:HISTIDINE-AMMONIA-LYASE-RXN","RHEA:21232"],"synonyms":[{"name":"L-histidine ammonia-lyase (urocanate-forming)","type":"related"},{"name":"L-histidine ammonia-lyase activity","type":"related"},{"name":"histidase activity","type":"related"},{"name":"histidinase activity","type":"related"},{"name":"histidine alpha-deaminase activity","type":"related"}],"termid":"GO:0004397"}


id: PBO:0065685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTTG1IP family member 2","termid":"PBO:0065685"}


id: GO:0061706
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of sucrose into pyruvate through both glucose and fructose intermediates, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.","definition_xrefs":["GOC:dph","MetaCyc:PWY-1042","PMID:15012287","GOC:glycolysis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycolytic process through fructose-6-phosphate","termid":"GO:0061615"},{"relation_name":"is_a","term_name":"glycolytic process from sucrose","termid":"GO:0061704"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0005975","GO:0008150","GO:0044281","GO:0006091"],"is_obsolete":false,"name":"glycolytic process from sucrose through glucose and fructose","termid":"GO:0061706"}


id: GO:0046178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of D-gluconate, the anion of D-gluconic acid, the aldonic acid derived from glucose.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate biosynthetic process","termid":"GO:0016051"},{"relation_name":"is_a","term_name":"D-gluconate metabolic process","termid":"GO:0019521"},{"relation_name":"is_a","term_name":"aldonic acid biosynthetic process","termid":"GO:0046175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"D-gluconate biosynthetic process","synonyms":[{"name":"D-gluconate anabolism","type":"exact"},{"name":"D-gluconate biosynthesis","type":"exact"},{"name":"D-gluconate formation","type":"exact"},{"name":"D-gluconate synthesis","type":"exact"}],"termid":"GO:0046178"}


id: GO:0060563
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which epiblast cells acquire specialized features of neuroepithelial cells.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"columnar/cuboidal epithelial cell differentiation","termid":"GO:0002065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuroepithelial cell differentiation","termid":"GO:0060563"}


id: PBO:0090247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II CTD phosphatase Ssu72","termid":"PBO:0090247"}


id: GO:0034068
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: nucleoside triphosphate + aminoglycoside = diphosphate + nucleotidylaminoglycoside.","definition_xrefs":["GOC:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotidyltransferase activity","termid":"GO:0016779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016779","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"aminoglycoside nucleotidyltransferase activity","synonyms":[{"name":"aminoglycoside adenylyltransferase activity","type":"narrow"},{"name":"streptomycin adenylate synthetase activity","type":"narrow"},{"name":"streptomycin adenyltransferase activity","type":"narrow"},{"name":"streptomycin adenylylase activity","type":"narrow"},{"name":"streptomycin adenylyltransferase activity","type":"narrow"},{"name":"streptomycin-spectinomycin adenylyltransferase activity","type":"narrow"}],"termid":"GO:0034068"}


id: GO:0005488
data:
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