# terms

id: GO:0140862
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a ubiquitin molecule to histone 2A at the lysine-119 residue.","definition_xrefs":["PMID:22844243","PMID:25470042","PMID:28624371"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2A ubiquitin ligase activity","termid":"GO:0141053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0004842"},{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140096","GO:0016740","GO:0004842","GO:0019787","GO:0016746","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"histone H2AK119 ubiquitin ligase activity","synonyms":[{"name":"histone H2A-K119 ubiquitin ligase activity","type":"exact"},{"name":"histone ubiquitin ligase activity (H2A-K119 specific)","type":"exact"}],"termid":"GO:0140862"}


id: MONDO:0001031
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute form of suppurative otitis media.","definition_xrefs":["MONDO:patterns/acute"],"direct_ancestors":[{"relation_name":"is_a","term_name":"suppurative otitis media","termid":"MONDO:0005975"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purulent acute otitis media","secondary_identifiers":["MEDGEN:543338","UMLS:C0271431","DOID:10435","ICD9:382.02","SCTID:194281003","ICD10CM:H66.0"],"synonyms":[{"name":"acute suppurative otitis media","type":"exact"},{"name":"suppurative otitis media, acute","type":"exact"}],"termid":"MONDO:0001031","xrefs":{"Monarch":{"xref_id":"0001031"}}}


id: GO:0045094
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to beta subunit of interleukin-18. IL-18b is a ligand non-binding chain and is required for signaling of IL-18 that binds with IL-18a.","definition_xrefs":["PMID:10653850"],"gene_count":0,"genotype_count":0,"name":"obsolete interleukin-18 beta subunit binding (obsolete GO:0045094)","synonyms":[{"name":"IL-18Rb binding","type":"exact"}],"termid":"GO:0045094"}


id: PBO:0087735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Slx5-Slx8 SUMO-targeted Ub ligase (STUbL) complex; role in Ub-mediated degradation of histone variant Cse4p preventing mislocalization to euchromatin; role in proteolysis of spindle positioning protein Kar9p, and DNA repair proteins Rad52p and Rad57p; forms SUMO-dependent nuclear foci, including DNA repair centers; contains a RING domain and two SIM motifs; associates with the centromere; required for maintenance of genome integrity like human ortholog RNF4","termid":"PBO:0087735"}


id: GO:0052222
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of environmental oxygen on, within or near a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative aerotaxis in environment of other organism involved in symbiotic interaction (obsolete GO:0052222)","synonyms":[{"name":"negative aerotaxis in environment of other organism during symbiotic interaction","type":"related"},{"name":"negative aerotaxis in response to environment of other organism","type":"exact"}],"termid":"GO:0052222"}


id: GO:1900217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of apoptotic process involved in metanephric nephron tubule development.","definition_xrefs":["GOC:TermGenie","GOC:mtg_kidney_jan10","GOC:yaf","PMID:17314325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic process involved in development","termid":"GO:1904748"},{"relation_name":"regulates","term_name":"apoptotic process involved in metanephric nephron tubule development","termid":"GO:1900205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of apoptotic process involved in metanephric nephron tubule development","synonyms":[{"name":"regulation of apoptosis of metanephric nephron tubule development","type":"narrow"},{"name":"regulation of apoptotic cell death of metanephric nephron tubule development","type":"exact"},{"name":"regulation of apoptotic process of metanephric nephron tubule development","type":"exact"},{"name":"regulation of apoptotic program of metanephric nephron tubule development","type":"narrow"},{"name":"regulation of apoptotic programmed cell death of metanephric nephron tubule development","type":"exact"},{"name":"regulation of programmed cell death by apoptosis of metanephric nephron tubule development","type":"exact"},{"name":"regulation of signaling (initiator) caspase activity of metanephric nephron tubule development","type":"related"},{"name":"regulation of type I programmed cell death of metanephric nephron tubule development","type":"narrow"}],"termid":"GO:1900217"}


id: MONDO:0003802
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm involving the cornea.","direct_ancestors":[{"relation_name":"is_a","term_name":"ocular cancer","termid":"MONDO:0002236"},{"relation_name":"is_a","term_name":"cornea neoplasm","termid":"MONDO:0021238"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005328"],"is_obsolete":false,"name":"cornea cancer","secondary_identifiers":["NCIT:C3565","DOID:6199","ICD9:190.4","ICD10CM:C69.1","MEDGEN:102282","SCTID:363464006","UMLS:C0153629"],"synonyms":[{"name":"cancer of cornea","type":"exact"},{"name":"cornea cancer","type":"exact"},{"name":"corneal tumor","type":"broad"},{"name":"corneal tumour","type":"broad"},{"name":"malignant cornea neoplasm","type":"exact"},{"name":"malignant cornea tumor","type":"exact"},{"name":"malignant cornea tumour","type":"exact"},{"name":"malignant corneal neoplasm","type":"exact"},{"name":"malignant corneal tumor","type":"exact"},{"name":"malignant corneal tumour","type":"exact"},{"name":"malignant neoplasm of cornea","type":"exact"},{"name":"malignant neoplasm of cornea (primary)","type":"exact"},{"name":"malignant neoplasm of the cornea","type":"exact"},{"name":"malignant tumor of cornea","type":"exact"},{"name":"malignant tumor of the cornea","type":"exact"},{"name":"malignant tumour of cornea","type":"exact"},{"name":"malignant tumour of the cornea","type":"exact"}],"termid":"MONDO:0003802","xrefs":{"Monarch":{"xref_id":"0003802"}}}


id: GO:0051081
data:
  {"annotated_genes":["SJAG_00840","SJAG_04578","SJAG_00680"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112287],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007077"},{"annotations":[105457],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140516"},{"annotations":[95613,105460],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905557"}]},"cv_name":"biological_process","definition":"The controlled breakdown of the nuclear membranes, for example during cellular division.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane disassembly","termid":"GO:0030397"},{"relation_name":"is_a","term_name":"nuclear membrane organization","termid":"GO:0071763"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00680":null,"SJAG_00840":null,"SJAG_04578":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"nuclear membrane disassembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"nuclear envelope breakdown","type":"related"},{"name":"nuclear envelope catabolism","type":"related"},{"name":"nuclear envelope degradation","type":"related"},{"name":"nuclear envelope disassembly","type":"related"}],"termid":"GO:0051081","terms_by_termid":{"GO:0007077":null,"GO:0140516":null,"GO:1905557":null}}


id: PBO:0017033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces pombe specific protein, predicted GPI anchored","termid":"PBO:0017033"}


id: PBO:0001786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial NTPase Ylf2 (predicted)","termid":"PBO:0001786"}


id: GO:0043705
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving cyanophycin, a non-protein, non-ribosomally produced amino acid polymer composed of an aspartic acid backbone and arginine side groups.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified amino acid metabolic process","termid":"GO:0006575"},{"relation_name":"is_a","term_name":"macromolecule metabolic process","termid":"GO:0043170"},{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cyanophycin metabolic process","synonyms":[{"name":"cyanophycin metabolism","type":"exact"},{"name":"multi-L-arginyl-poly(L-aspartic acid) metabolism","type":"exact"}],"termid":"GO:0043705"}


id: PBO:0027902
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_centromeric_outer_repeat_transcript-derived_siRNA_level","termid":"PBO:0027902"}


id: PBO:0073150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC24B antisense RNA 1","termid":"PBO:0073150"}


id: PBO:0046522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ermin","termid":"PBO:0046522"}


id: MONDO:0012597
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"prostate cancer, hereditary","termid":"MONDO:0700275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"prostate cancer, hereditary, 9","secondary_identifiers":["MESH:C567031","OMIM:610997","UMLS:C1970250","GARD:15505","MEDGEN:369689"],"synonyms":[{"name":"HPC9","type":"related"},{"name":"prostate cancer, hereditary, 9","type":"exact"},{"name":"prostate cancer, hereditary, type 9","type":"exact"}],"termid":"MONDO:0012597","xrefs":{"Monarch":{"xref_id":"0012597"}}}


id: GO:0098745
data:
  {"annotated_genes":["SJAG_05010","SJAG_01746","SJAG_05694"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[93097,93325,111707],"is_not":false,"summary":null,"term":"GO:0098745"}]},"cv_name":"cellular_component","definition":"A protein complex consisting of a Dcp1 regulatory subunit and a Dcp2 catalytic subunit that has mRNA cap binding activity and is involved in decapping of nuclear-transcribed mRNA.","definition_xrefs":["GOC:vw","PMID:22323607","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01746":null,"SJAG_05010":null,"SJAG_05694":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"RNA decapping complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Dcp1-Dcp2 complex","type":"exact"}],"termid":"GO:0098745","terms_by_termid":{"GO:0098745":null}}


id: MONDO:0017146
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete sickle cell disease and related diseases (obsolete MONDO:0017146)","secondary_identifiers":["Orphanet:275752"],"termid":"MONDO:0017146","xrefs":{"Monarch":{"xref_id":"0017146"}}}


id: MONDO:0859164
data:
  {"annotated_genes":["SJAG_00750"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88299],"is_not":false,"summary":null,"term":"MONDO:0859164"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00750":null},"genotype_count":0,"is_obsolete":false,"name":"osteootohepatoenteric syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:619377","MEDGEN:1785846","UMLS:C5543557"],"termid":"MONDO:0859164","terms_by_termid":{"MONDO:0859164":null},"xrefs":{"Monarch":{"xref_id":"0859164"}}}


id: PBO:0060462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium leak channel, non-selective","termid":"PBO:0060462"}


id: GO:0019724
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved with the carrying out of an immune response by a B cell, through, for instance, the production of antibodies or cytokines, or antigen presentation to T cells.","definition_xrefs":["GO_REF:0000022","GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte mediated immunity","termid":"GO:0002449"},{"relation_name":"is_a","term_name":"adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains","termid":"GO:0002460"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"B cell mediated immunity","synonyms":[{"name":"B lymphocyte mediated immune effector process","type":"exact"},{"name":"B lymphocyte mediated immunity","type":"exact"},{"name":"B-cell mediated immune effector process","type":"exact"},{"name":"B-cell mediated immunity","type":"exact"},{"name":"B-lymphocyte mediated immune effector process","type":"exact"},{"name":"B-lymphocyte mediated immunity","type":"exact"}],"termid":"GO:0019724"}


id: PBO:0004435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF1A","termid":"PBO:0004435"}


id: PBO:0071320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L27a pseudogene 4","termid":"PBO:0071320"}


id: MONDO:0001131
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete duodenum adenocarcinoma (obsolete MONDO:0001131)","termid":"MONDO:0001131","xrefs":{"Monarch":{"xref_id":"0001131"}}}


id: PBO:0060776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B8 pseudogene 2","termid":"PBO:0060776"}


id: FYPO:0004965
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell is inviable, is shaped in the form of a pear, and has a larger volume than normal, in the vegetative growth phase of the life cycle. One end is rounded, while the other resembles an end of a normal rod-shaped cell. The normally shaped end has the same diameter as a wild-type cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable swollen vegetative cell with abnormal cell shape","termid":"FYPO:0002415"},{"relation_name":"is_a","term_name":"inviable pear-shaped vegetative cell","termid":"FYPO:0002904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001320","FYPO:0000004","FYPO:0001985"],"is_obsolete":false,"name":"inviable swollen pear-shaped vegetative cell","synonyms":[{"name":"inviable enlarged pear-shaped vegetative cell","type":"related"},{"name":"inviable enlarged volume pear-shaped vegetative cell","type":"exact"},{"name":"inviable large pear-shaped vegetative cell","type":"related"},{"name":"inviable swollen ice cream cone-shaped vegetative cell","type":"exact"},{"name":"inviable swollen pear-shaped cell during vegetative growth","type":"exact"},{"name":"inviable swollen pear-shaped vegetative cell during mitotic cell cycle","type":"related"},{"name":"inviable, increased pear-shaped vegetative cell size","type":"related"},{"name":"inviable, increased pear-shaped vegetative cell volume","type":"exact"},{"name":"lethal; swollen pear-shaped vegetative cell","type":"exact"}],"termid":"FYPO:0004965"}


id: PBO:0110203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucear single stranded DNA specific 5'-3' exodeoxyribonuclease Exo5.1","termid":"PBO:0110203"}


id: GO:0099061
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic density membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of postsynaptic density membrane (obsolete GO:0099061)","termid":"GO:0099061"}


id: FYPO:0005743
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of invertase activity (beta-fructofuranosidase activity) is normal (i.e. indistinguishable from wild type) under conditions of glucose starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000257"],"is_obsolete":false,"name":"normal invertase activity during glucose starvation","synonyms":[{"name":"normal beta-fructofuranosidase activity during glucose starvation","type":"exact"},{"name":"normal invertase activity during cellular response to glucose starvation","type":"exact"},{"name":"normal invertase activity during glucose depletion","type":"exact"},{"name":"normal invertase activity during glucose deprivation","type":"exact"},{"name":"normal invertase activity during glucose limitation","type":"related"}],"termid":"FYPO:0005743"}


id: GO:0055112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The splitting or migration of one epithelial sheet into two involved in the process of deuterostomic gastrulation.","definition_xrefs":["ISBN:0878932437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"delamination","termid":"GO:0060232"},{"relation_name":"part_of","term_name":"gastrulation with mouth forming second","termid":"GO:0001702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"negatively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"delamination involved in gastrulation with mouth forming second","termid":"GO:0055112"}


id: MONDO:0004127
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lung adenocarcinoma detectable by sputum cytology only. The primary tumor is undetectable radiographically or during bronchoscopy; therefore, it can not be assessed.","definition_xrefs":["NCIT:C6699"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lung adenocarcinoma","termid":"MONDO:0005061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"lung occult adenocarcinoma","secondary_identifiers":["UMLS:C1335096","DOID:7168","MEDGEN:277443"],"synonyms":[{"name":"occult adenocarcinoma of lung","type":"related"},{"name":"occult adenocarcinoma of the lung","type":"exact"},{"name":"occult lung adenocarcinoma","type":"related"}],"termid":"MONDO:0004127","xrefs":{"Monarch":{"xref_id":"0004127"}}}


id: PBO:0012261
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA Elimination Defective","termid":"PBO:0012261"}


id: PBO:0027347
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_RNA_level_during_cellular_response_to_menadione","termid":"PBO:0027347"}


id: GO:0097542
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Part of the cilium where the axoneme ends. The ciliary tip has been implicated in ciliary assembly and disassembly, as well as signal transduction.","definition_xrefs":["GOC:cilia","PMID:23970417"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cilium","termid":"GO:0005929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"ciliary tip","synonyms":[{"name":"cilial tip","type":"exact"},{"name":"cilium tip","type":"exact"},{"name":"flagellar tip","type":"exact"},{"name":"flagellum tip","type":"exact"}],"termid":"GO:0097542"}


id: MONDO:0044743
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary or metastatic malignant neoplasm affecting the major salivary glands. Representative examples include carcinoma, lymphoma, and sarcoma.","definition_xrefs":["NCIT:C4762"],"direct_ancestors":[{"relation_name":"is_a","term_name":"salivary gland cancer","termid":"MONDO:0004669"},{"relation_name":"is_a","term_name":"neoplasm of major salivary gland","termid":"MONDO:0021368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"major salivary gland cancer","secondary_identifiers":["SCTID:363378008","MEDGEN:96919","UMLS:C0496763"],"synonyms":[{"name":"cancer of major salivary gland","type":"exact"},{"name":"malignant major salivary gland neoplasm","type":"exact"},{"name":"malignant major salivary gland tumor","type":"exact"},{"name":"malignant major salivary gland tumour","type":"exact"},{"name":"malignant neoplasm of major salivary gland","type":"exact"},{"name":"malignant neoplasm of major salivary glands","type":"related"},{"name":"malignant neoplasm of the major salivary gland","type":"exact"},{"name":"malignant tumor of major salivary gland","type":"exact"},{"name":"malignant tumor of the major salivary gland","type":"exact"},{"name":"malignant tumour of major salivary gland","type":"exact"},{"name":"malignant tumour of the major salivary gland","type":"exact"}],"termid":"MONDO:0044743","xrefs":{"Monarch":{"xref_id":"0044743"}}}


id: GO:0061566
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of introducing a phosphate group into CMP, cytidine monophosphate, to produce CDP. Addition of two phosphate groups produces CTP.","definition_xrefs":["PMID:23416111","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate phosphorylation","termid":"GO:0046940"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"CMP phosphorylation","termid":"GO:0061566"}


id: GO:0005105
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 1 fibroblast growth factor receptor (FGFR1).","definition_xrefs":["GOC:ceb","GOC:fb_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor binding","termid":"GO:0005104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"type 1 fibroblast growth factor receptor binding","synonyms":[{"name":"FGFR1 binding","type":"broad"},{"name":"FGFR1 ligand","type":"narrow"},{"name":"breathless binding","type":"narrow"},{"name":"breathless ligand","type":"narrow"},{"name":"type 1 fibroblast growth factor receptor ligand","type":"narrow"}],"termid":"GO:0005105"}


id: GO:0061860
data:
  {"annotated_genes":["SJAG_04150","SJAG_02182","SJAG_00729","SJAG_00272","SJAG_01010"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91355,95746,97059,114115,114673],"is_not":false,"summary":null,"term":"GO:0061860"}]},"cv_name":"molecular_function","definition":"Facilitating the opening of the ring structure of the PCNA complex, or any of the related sliding clamp complexes, and their removal from the DNA duplex, driven by ATP hydrolysis.","definition_xrefs":["GOC:vw","PMID:23499004"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-dependent activity, acting on DNA","termid":"GO:0008094"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00272":null,"SJAG_00729":null,"SJAG_01010":null,"SJAG_02182":null,"SJAG_04150":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140097","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"DNA clamp unloader activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"DNA clamp unloading activity","type":"exact"}],"termid":"GO:0061860","terms_by_termid":{"GO:0061860":null}}


id: PBO:0056769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase like 21A pseudogene 1","termid":"PBO:0056769"}


id: GO:1902595
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of DNA replication origin binding.","definition_xrefs":["GOC:TermGenie","GO_REF:0000059","PMID:11850415"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of DNA replication origin binding (obsolete GO:1902595)","synonyms":[{"name":"regulation of ARS binding","type":"narrow"}],"termid":"GO:1902595"}


id: MONDO:0003124
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A sex cord-stromal tumor that arises from the testis and is characterized by the presence of cells that resemble the successive stages of development of Leydig cells. It usually presents as a painless testicular mass. Gynecomastia is present in approximately thirty percent of the cases. Libido may be decreased. In children, precocious puberty may be present. A minority of cases exhibit malignant characteristics.","definition_xrefs":["NCIT:C6356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"testicular sex cord-stromal neoplasm","termid":"MONDO:0003125"},{"relation_name":"is_a","term_name":"Leydig cell tumor","termid":"MONDO:0006266"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testicular Leydig cell tumor","secondary_identifiers":["DOID:4756","MEDGEN:163584","SCTID:67871000119105","UMLS:C0863027"],"synonyms":[{"name":"Leydig cell neoplasm of testis","type":"exact"},{"name":"Leydig cell neoplasm of the testis","type":"exact"},{"name":"Leydig cell tumor of testis","type":"exact"},{"name":"Leydig cell tumor of the testis","type":"related"},{"name":"Leydig cell tumour of testis","type":"exact"},{"name":"Leydig cell tumour of the testis","type":"related"},{"name":"testicular Leydig cell neoplasm","type":"exact"},{"name":"testicular Leydig cell tumor","type":"exact"},{"name":"testis Leydig cell tumor","type":"exact"},{"name":"testis Leydig cell tumour","type":"exact"}],"termid":"MONDO:0003124","xrefs":{"Monarch":{"xref_id":"0003124"}}}


id: PBO:0068228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 535","termid":"PBO:0068228"}


id: GO:0075243
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which male and female gametangia develop and fuse to form an oospore, a thick-walled resting spore of Oomycetes and certain algae and fungi.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sexual sporulation resulting in formation of a cellular spore","termid":"GO:0043935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"oospore formation","termid":"GO:0075243"}


id: MONDO:0100066
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A tyrosine hydroxylase deficiency in which individuals are extremely sensitive to levodopa therapy. In this very severe form, treatment with levodopa is often limited by intolerable dyskinesias.","definition_xrefs":["PMID:20301610"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tyrosine hydroxylase deficiency","termid":"MONDO:0100064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"TH-deficient progressive infantile encephalopathy","synonyms":[{"name":"tyrosine hydroxylase-deficient progressive infantile encephalopathy","type":"exact"}],"termid":"MONDO:0100066","xrefs":{"Monarch":{"xref_id":"0100066"}}}


id: GO:0044646
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of complement activation in the bitten/stung organism.","definition_xrefs":["GOC:fj","GOC:jl","PMID:20837040"],"gene_count":0,"genotype_count":0,"name":"obsolete envenomation resulting in modulation of complement activation in another organism (obsolete GO:0044646)","synonyms":[{"name":"envenomation resulting in modulation of complement activation in other organism","type":"exact"},{"name":"envenomation resulting in regulation of complement activation in other organism","type":"exact"}],"termid":"GO:0044646"}


id: PBO:0039128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"androgen induced 1 pseudogene 1","termid":"PBO:0039128"}


id: GO:0019206
data:
  {"annotated_genes":["SJAG_01070","SJAG_00533","SJAG_03708"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004001"},{"annotations":[94746,116760],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043771"},{"annotations":[80726,94747],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004849"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + nucleoside = ADP + nucleoside monophosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"nucleobase-containing compound kinase activity","termid":"GO:0019205"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00533":null,"SJAG_01070":null,"SJAG_03708":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016301","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"nucleoside kinase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-73598","Reactome:R-HSA-110137","Reactome:R-HSA-109903","Reactome:R-HSA-109671","Reactome:R-HSA-110138","Reactome:R-HSA-109759","Reactome:R-HSA-73599","Reactome:R-HSA-73632"],"termid":"GO:0019206","terms_by_termid":{"GO:0004001":null,"GO:0004849":null,"GO:0043771":null}}


id: PBO:0072087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S12 pseudogene 17","termid":"PBO:0072087"}


id: PBO:0059830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial transcription termination factor 4","termid":"PBO:0059830"}


id: PBO:0044952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydroorotate dehydrogenase (quinone)","termid":"PBO:0044952"}


id: GO:0010925
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the rate or frequency of inositol-polyphosphate 5-phosphatase activity, the catalysis of the reactions: D-myo-inositol 1,4,5-trisphosphate + H2O = myo-inositol 1,4-bisphosphate + phosphate, and 1D-myo-inositol 1,3,4,5-tetrakisphosphate + H2O = 1D-myo-inositol 1,3,4-trisphosphate + phosphate.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of inositol-polyphosphate 5-phosphatase activity (obsolete GO:0010925)","termid":"GO:0010925"}


id: GO:0047536
data:
  {"annotated_genes":["SJAG_03312","SJAG_04678","SJAG_04988"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74223,78357,101167],"is_not":false,"summary":null,"term":"GO:0047536"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + L-2-aminoadipate = 2-oxoadipate + L-glutamate.","definition_xrefs":["EC:2.6.1.39","RHEA:12601"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03312":null,"SJAG_04678":null,"SJAG_04988":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016769"],"is_obsolete":false,"name":"2-aminoadipate transaminase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R01939","Reactome:R-HSA-70952","MetaCyc:2-AMINOADIPATE-AMINOTRANSFERASE-RXN","Reactome:R-HSA-508561"],"synonyms":[{"name":"2-aminoadipate aminotransferase activity","type":"exact"},{"name":"2-aminoadipic aminotransferase activity","type":"related"},{"name":"L-2-aminoadipate:2-oxoglutarate aminotransferase activity","type":"related"},{"name":"alpha-aminoadipate aminotransferase activity","type":"related"},{"name":"glutamate-alpha-ketoadipate transaminase activity","type":"related"},{"name":"glutamic-ketoadipic transaminase activity","type":"related"}],"termid":"GO:0047536","terms_by_termid":{"GO:0047536":null}}


id: PBO:0064668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 3","termid":"PBO:0064668"}


id: PBO:0005286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Ipi1 (predicted)","termid":"PBO:0005286"}


id: GO:0001553
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The set of processes resulting in differentiation of theca and granulosa cells into luteal cells and in the formation of a corpus luteum after ovulation.","direct_ancestors":[{"relation_name":"is_a","term_name":"ovulation cycle process","termid":"GO:0022602"},{"relation_name":"part_of","term_name":"female gonad development","termid":"GO:0008585"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"luteinization","secondary_identifiers":["Wikipedia:Luteal_phase","Wikipedia:Luteinization"],"synonyms":[{"name":"luteal phase","type":"related"}],"termid":"GO:0001553"}


id: PBO:0066483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ret finger protein like 1","termid":"PBO:0066483"}


id: MONDO:0018195
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete non-seminomatous germ cell tumor of testis (obsolete MONDO:0018195)","termid":"MONDO:0018195","xrefs":{"Monarch":{"xref_id":"0018195"}}}


id: PBO:0055946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 55","termid":"PBO:0055946"}


id: PBO:0028563
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_meiotic_DNA_double-strand_break_formation","termid":"PBO:0028563"}


id: PBO:0059075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"molybdenum cofactor synthesis 3 pseudogene 1","termid":"PBO:0059075"}


id: GO:1902586
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An intercellular transport which involves another organism.","definition_xrefs":["GOC:TermGenie","GOC:jl","GO_REF:0000089"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism intercellular transport (obsolete GO:1902586)","synonyms":[{"name":"multi organism intercellular transport","type":"exact"}],"termid":"GO:1902586"}


id: PBO:0077951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 9-2","termid":"PBO:0077951"}


id: PBO:0074960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 114-2","termid":"PBO:0074960"}


id: MONDO:0000488
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A adenoma that involves the periampullary region of duodenum.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"ampulla of vater neoplasm","termid":"MONDO:0000921"},{"relation_name":"is_a","term_name":"adenoma of small intestine","termid":"MONDO:0021303"},{"relation_name":"is_a","term_name":"tumor of duodenum","termid":"MONDO:0021375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"periampullary adenoma","secondary_identifiers":["DOID:0050849"],"synonyms":[{"name":"periampullary region of duodenum adenoma","type":"exact"}],"termid":"MONDO:0000488","xrefs":{"Monarch":{"xref_id":"0000488"}}}


id: PBO:0081435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 286A","termid":"PBO:0081435"}


id: PBO:0066676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RLF zinc finger","termid":"PBO:0066676"}


id: GO:1904557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-alanine across a membrane by means of some agent such as a transporter or a pore.","definition_xrefs":["GOC:TermGenie","GO_REF:0000069","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-alanine transport","termid":"GO:0015808"},{"relation_name":"is_a","term_name":"L-alpha-amino acid transmembrane transport","termid":"GO:1902475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"L-alanine transmembrane transport","termid":"GO:1904557"}


id: GO:0051974
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops or reduces the activity of the enzyme telomerase, which catalyzes of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of telomerase activity (obsolete GO:0051974)","synonyms":[{"name":"down regulation of telomerase activity","type":"exact"},{"name":"down-regulation of telomerase activity","type":"exact"},{"name":"downregulation of telomerase activity","type":"exact"},{"name":"inhibition of telomerase activity","type":"narrow"},{"name":"telomerase inhibitor","type":"related"}],"termid":"GO:0051974"}


id: MONDO:0013949
data:
  {"annotated_genes":["SJAG_02693"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89006],"is_not":false,"summary":null,"term":"MONDO:0013949"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"peroxisome biogenesis disorder","termid":"MONDO:0019234"},{"relation_name":"is_a","term_name":"peroxisome biogenesis disorder due to PEX13 defect","termid":"MONDO:0100267"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02693":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019053"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0019053","MONDO:0006025","MONDO:0005244","MONDO:0005559","MONDO:0005066"],"is_obsolete":false,"name":"peroxisome biogenesis disorder 11A (Zellweger)","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0080485","UMLS:C3554000","GARD:15874","MEDGEN:766914","OMIM:614883"],"synonyms":[{"name":"PBD11A","type":"related"},{"name":"peroxisome biogenesis disorder 11A (Zellweger)","type":"exact"},{"name":"peroxisome biogenesis disorder, complementation group 13","type":"related"},{"name":"peroxisome biogenesis disorder, complementation group H","type":"related"}],"termid":"MONDO:0013949","terms_by_termid":{"MONDO:0013949":null},"xrefs":{"Monarch":{"xref_id":"0013949"}}}


id: GO:0033562
data:
  {"annotated_genes":["SJAG_04574","SJAG_03689","SJAG_01601","SJAG_02621","SJAG_03356"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100900,101346,112310,117822,119947],"is_not":false,"summary":null,"term":"GO:0033562"}]},"cv_name":"biological_process","definition":"A process in which the RNAi machinery mediates the degradation of nascent transcripts in association with chromatin.","definition_xrefs":["GOC:mah","PMID:21151114","PMID:22431512","GOC:vw","PMID:17512405"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory ncRNA-mediated gene silencing","termid":"GO:0031047"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01601":null,"SJAG_02621":null,"SJAG_03356":null,"SJAG_03689":null,"SJAG_04574":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"co-transcriptional gene silencing by RNA interference machinery","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"RNAi-mediated CTGS","type":"exact"},{"name":"co-transcriptional gene silencing by small RNA","type":"exact"},{"name":"cotranscriptional gene silencing by RNA interference machinery","type":"related"},{"name":"cotranscriptional gene silencing by small RNA","type":"related"},{"name":"small RNA-mediated cotranscriptional gene silencing","type":"exact"}],"termid":"GO:0033562","terms_by_termid":{"GO:0033562":null}}


id: MOD:02028
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a residue with one of the Applied Biosystems iTRAQ4plex reagent reporter+balance groups.","definition_xrefs":["Unimod:214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"},{"relation_name":"is_a","term_name":"modifications with monoisotopic mass differences that are nominally equal at a resolution below 0.1 Da","termid":"MOD:01513"},{"relation_name":"is_a","term_name":"isotope tagged reagent acylated residue","termid":"MOD:01705"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter+balance reagent N-acylated residue","termid":"MOD:01709"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ4plex reporter+balance reagent acylated residue, average mass modification","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"iTRAQ","type":"related"}],"termid":"MOD:02028"}


id: FYPO:0008032
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the mitotic cell cycle spindle assembly checkpoint activation is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:36108046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic spindle assembly checkpoint","termid":"FYPO:0003762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320","FYPO:0000298","FYPO:0001312","FYPO:0000631"],"is_obsolete":false,"name":"normal mitotic spindle checkpoint activation","termid":"FYPO:0008032"}


id: GO:0048142
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The four rounds of incomplete mitosis undergone by a cystoblast to form a 16-cell cyst of interconnected cells within a germarium. Within the cyst, one cell differentiates into an oocyte while the rest become nurse cells. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu","GOC:jid","PMID:11131529"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cystoblast division","termid":"GO:0007282"},{"relation_name":"part_of","term_name":"germarium-derived female germ-line cyst formation","termid":"GO:0030727"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"germarium-derived cystoblast division","synonyms":[{"name":"germarium-derived cystoblast cell division","type":"exact"}],"termid":"GO:0048142"}


id: GO:0034955
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2,3-dihydroxydiphenyl ether + O2 + H2O = 2-hydroxymuconate + phenol.","definition_xrefs":["UM-BBD_reactionID:r1451"],"gene_count":0,"genotype_count":0,"name":"obsolete 2,3-dihydroxydiphenyl ether dioxygenase activity (obsolete GO:0034955)","termid":"GO:0034955"}


id: GO:0046758
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A form of viral release in which the nucleocapsid evaginates from the host Golgi membrane system, resulting in envelopment of the virus and cell lysis.","definition_xrefs":["ISBN:0072370319"],"gene_count":0,"genotype_count":0,"name":"obsolete lytic virus budding from Golgi membrane (obsolete GO:0046758)","synonyms":[{"name":"lytic Golgi membrane viral budding","type":"exact"},{"name":"lytic viral budding from Golgi membrane","type":"exact"},{"name":"lytic virus budding from Golgi membrane","type":"exact"}],"termid":"GO:0046758"}


id: GO:1900999
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of nitrobenzene.","definition_xrefs":["GOC:TermGenie","UniPathway:UPA00923","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"nitrobenzene metabolic process","termid":"GO:0018916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nitrobenzene biosynthetic process","synonyms":[{"name":"nitrobenzene anabolism","type":"exact"},{"name":"nitrobenzene biosynthesis","type":"exact"},{"name":"nitrobenzene formation","type":"exact"},{"name":"nitrobenzene synthesis","type":"exact"}],"termid":"GO:1900999"}


id: PBO:0119999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 6, pseudogene","termid":"PBO:0119999"}


id: GO:0075507
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Viral penetration into the host nucleus where the where a viral capsid docks on the cytoplasmic side of the nuclear pore complex (NPC) and ejects the viral genome through the pore into the nucleoplasm.","definition_xrefs":["PMID:22929056","VZ:989"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral penetration into host nucleus","termid":"GO:0075732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"entry of viral genome into host nucleus via docking of viral capsid to the nuclear pore complex and injection of viral genome","termid":"GO:0075507"}


id: PBO:0062603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily P member 1","termid":"PBO:0062603"}


id: PBO:0108565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair endonuclease non-catalytic (ERCC1) subunit Swi10","termid":"PBO:0108565"}


id: SO:0001984
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene cassette array that corresponds to a silenced version of a mating type region.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene_cassette_array","termid":"SO:0005854"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"silent_mating_type_cassette_array","synonyms":[{"name":"silent mating-type cassette","type":"related"}],"termid":"SO:0001984"}


id: PBO:0113329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; contributes to high inhibitor stress tolerance; deletion mutant is viable","termid":"PBO:0113329"}


id: GO:0045446
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a mesodermal, bone marrow or neural crest cell acquires specialized features of an endothelial cell, a thin flattened cell. A layer of such cells lines the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium.","definition_xrefs":["CL:0000115","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation","termid":"GO:0030855"},{"relation_name":"part_of","term_name":"endothelium development","termid":"GO:0003158"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endothelial cell differentiation","termid":"GO:0045446"}


id: PBO:0052421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kirre like nephrin family adhesion molecule 3","termid":"PBO:0052421"}


id: MONDO:0016523
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Bronchogenic cysts (BCs) are congenital malformations resulting from abnormal budding of the foregut and are most commonly found in the mediastinum.","definition_xrefs":["Orphanet:2357"],"direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory system disorder","termid":"MONDO:0005087"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bronchogenic cyst","secondary_identifiers":["HP:0100730","GARD:1025","MedDRA:10064585","MESH:D001994","MEDGEN:668","UMLS:C0006281","icd11.foundation:355400995"],"synonyms":[{"name":"bronchogenic cyst","type":"exact"},{"name":"bronchogenic cyst (disease)","type":"exact"}],"termid":"MONDO:0016523","xrefs":{"Monarch":{"xref_id":"0016523"}}}


id: PBO:0077643
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor necrosis factor","termid":"PBO:0077643"}


id: PBO:0088837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic cohesin complex kleisin subunit Rad21","termid":"PBO:0088837"}


id: MONDO:0012977
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive nonsyndromic deafness in which the cause of the disease is a mutation in the GJB6 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0019497"],"is_obsolete":false,"name":"autosomal recessive nonsyndromic hearing loss 1B","secondary_identifiers":["OMIM:612645","MEDGEN:436381","UMLS:C2675235","GARD:22629","MESH:C567213","GTR:AN1075764","DOID:0110476"],"synonyms":[{"name":"Autosomal recessive deafness type 1B","type":"narrow"},{"name":"DFNB1B","type":"narrow"},{"name":"GJB6 autosomal recessive nonsyndromic deafness","type":"narrow"},{"name":"autosomal recessive deafness 1B","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness 1B","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness caused by mutation in GJB6","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness type 1B","type":"narrow"},{"name":"deafness, autosomal recessive 1B","type":"narrow"},{"name":"deafness, autosomal recessive 1b","type":"narrow"},{"name":"deafness, autosomal recessive type 1B","type":"narrow"}],"termid":"MONDO:0012977","xrefs":{"Monarch":{"xref_id":"0012977"}}}


id: PBO:0054839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2253","termid":"PBO:0054839"}


id: GO:0042034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of a C-terminal peptidyl-lysine to form peptidyl-L-lysine methyl ester.","definition_xrefs":["RESID:AA0318"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-L-lysine methyl ester biosynthetic process from peptidyl-lysine (obsolete GO:0042034)","synonyms":[{"name":"peptidyl-lysine esterification","type":"exact"}],"termid":"GO:0042034"}


id: PBO:0065301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 8","termid":"PBO:0065301"}


id: GO:1903087
data:
  {"annotated_genes":["SJAG_03200","SJAG_04003","SJAG_03544","SJAG_01760","SJAG_04558"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91900,109243,114477,114680,116965],"is_not":false,"summary":null,"term":"GO:1903087"}]},"cv_name":"biological_process","definition":"Any spindle pole body duplication that is involved in the mitotic cell cycle.","definition_xrefs":["GO_REF:0000060","GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle pole body duplication","termid":"GO:0030474"},{"relation_name":"is_a","term_name":"mitotic cell cycle process","termid":"GO:1903047"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01760":null,"SJAG_03200":null,"SJAG_03544":null,"SJAG_04003":null,"SJAG_04558":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0000226","GO:0007010","GO:0044085","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"mitotic spindle pole body duplication","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"spindle pole body assembly involved in mitotic cell cycle","type":"exact"},{"name":"spindle pole body biogenesis involved in mitotic cell cycle","type":"exact"},{"name":"spindle pole body biosynthesis involved in mitotic cell cycle","type":"exact"},{"name":"spindle pole body duplication associated with nuclear envelope involved in mitotic cell cycle","type":"exact"},{"name":"spindle pole body duplication in cytoplasm involved in mitotic cell cycle","type":"exact"},{"name":"spindle pole body duplication involved in mitotic cell cycle","type":"exact"},{"name":"spindle pole body formation involved in mitotic cell cycle","type":"exact"},{"name":"spindle pole body replication involved in mitotic cell cycle","type":"exact"}],"termid":"GO:1903087","terms_by_termid":{"GO:1903087":null}}


id: GO:0055052
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex for the transport of metabolites into the cell, consisting of 5 subunits: two ATP-binding subunits, two membrane spanning subunits, and one substrate-binding subunit. In organisms with two membranes, the substrate-binding protein moves freely in the periplasmic space and joins the other subunits only when bound with substrate. In organisms with only one membrane the substrate-binding protein is tethered to the cytoplasmic membrane and associated with the other subunits. Transport of the substrate across the membrane is driven by the hydrolysis of ATP.","definition_xrefs":["GOC:mtg_sensu","GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-binding cassette (ABC) transporter complex","termid":"GO:0043190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing","termid":"GO:0055052"}


id: MONDO:0012796
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any retinitis pigmentosa in which the cause of the disease is a mutation in the PROM1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"},{"relation_name":"is_a","term_name":"PROM1-related recessive retinopathy","termid":"MONDO:1040052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0004736","MONDO:0005328","MONDO:0005066"],"is_obsolete":false,"name":"retinitis pigmentosa 41","secondary_identifiers":["GARD:10379","UMLS:C2677516","DOID:0110376","ICD10CM:H35.5","OMIM:612095","MESH:C567422","MEDGEN:383126"],"synonyms":[{"name":"PROM1 retinitis pigmentosa","type":"exact"},{"name":"RP 41","type":"related"},{"name":"RP41","type":"exact"},{"name":"retinal Degeneration, autosomal recessive, prominin-related","type":"related"},{"name":"retinitis pigmentosa 41","type":"exact"},{"name":"retinitis pigmentosa caused by mutation in PROM1","type":"exact"},{"name":"retinitis pigmentosa type 41","type":"exact"}],"termid":"MONDO:0012796","xrefs":{"Monarch":{"xref_id":"0012796"}}}


id: PR:Q9UTS8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of any of the following genes in Schizosaccharomyces pombe 972h-: fex1/fex2.","definition_xrefs":["UniProtKB:Q9UTS8","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0695 membrane protein C977.11/PB8B6.06c (Schizosaccharomyces pombe 972h-)","synonyms":[{"name":"Spom972h-fex2","type":"exact"}],"termid":"PR:Q9UTS8"}


id: PBO:0081095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger DHHC-type containing 20 pseudogene 4","termid":"PBO:0081095"}


id: PBO:0065242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 15","termid":"PBO:0065242"}


id: MONDO:0020176
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A neoplasm (disease) that involves the sebaceous gland of eyelid.","definition_xrefs":["MONDO:patterns/location"],"gene_count":0,"genotype_count":0,"name":"obsolete palpebral sebaceous gland tumor (obsolete MONDO:0020176)","secondary_identifiers":["Orphanet:98585"],"synonyms":[{"name":"neoplasm of sebaceous gland of eyelid","type":"exact"},{"name":"sebaceous gland of eyelid neoplasm","type":"exact"},{"name":"sebaceous gland of eyelid neoplasm (disease)","type":"exact"},{"name":"sebaceous gland of eyelid tumor","type":"exact"},{"name":"sebaceous gland of eyelid tumour","type":"exact"},{"name":"tumor of sebaceous gland of eyelid","type":"exact"},{"name":"tumour of sebaceous gland of eyelid","type":"exact"}],"termid":"MONDO:0020176","xrefs":{"Monarch":{"xref_id":"0020176"}}}


id: GO:1900629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving methanophenazine.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"methanophenazine metabolic process","synonyms":[{"name":"methanophenazine metabolism","type":"exact"}],"termid":"GO:1900629"}


id: MONDO:0009663
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucus inspissation of respiratory tract","secondary_identifiers":["MESH:C565366","MEDGEN:340702","OMIM:253240","UMLS:C1854729"],"synonyms":[{"name":"mucus inspissation of respiratory tract","type":"exact"}],"termid":"MONDO:0009663","xrefs":{"Monarch":{"xref_id":"0009663"}}}


id: PBO:0058472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5580","termid":"PBO:0058472"}


id: GO:0009976
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: delta-tocopherol = 2-methyl-6-phytyl-1,4-benzene-1,4-diol, gamma-tocopherol = 2,3-dimethyl-6-phytylbenzene-1,4-diol. delta-tocotrienol = 6-geranylgeranyl-2-methylbenzene-1,4-diol gamma-tocotrienol, and = 6-geranylgeranyl-2,3-dimethylbenzene-1,4-diol.","definition_xrefs":["EC:5.5.1.24","PMID:12213958"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclase activity","termid":"GO:0009975"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0009975"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0009975"],"is_obsolete":false,"name":"tocopherol cyclase activity","termid":"GO:0009976"}


id: PBO:0044186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTP synthase 2","termid":"PBO:0044186"}


id: GO:0046133
data:
  {"annotated_genes":["SJAG_01673"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90967],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006216"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any ribonucleoside, a nucleoside in which a pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoside catabolic process","termid":"GO:0042454"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleoside metabolic process","termid":"GO:0046131"},{"relation_name":"is_a","term_name":"pyrimidine nucleoside catabolic process","termid":"GO:0046135"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01673":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"pyrimidine ribonucleoside catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine ribonucleoside breakdown","type":"exact"},{"name":"pyrimidine ribonucleoside catabolism","type":"exact"},{"name":"pyrimidine ribonucleoside degradation","type":"exact"}],"termid":"GO:0046133","terms_by_termid":{"GO:0006216":null}}


id: GO:0071238
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brefeldin A stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to brefeldin A","termid":"GO:0031001"},{"relation_name":"is_a","term_name":"cellular response to antibiotic","termid":"GO:0071236"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to brefeldin A","termid":"GO:0071238"}


id: PBO:0091936
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIDdle","termid":"PBO:0091936"}


id: PBO:0051313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1/OR2-9 (pseudogene)","termid":"PBO:0051313"}


id: MONDO:0012710
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Hirschsprung disease, susceptibility to","termid":"MONDO:0100179"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hirschsprung disease, susceptibility to, 9","secondary_identifiers":["OMIM:611644","UMLS:C1968840","MEDGEN:369866"],"synonyms":[{"name":"HSCR9","type":"exact"},{"name":"Hirschsprung disease, susceptibility to, 9","type":"exact"}],"termid":"MONDO:0012710","xrefs":{"Monarch":{"xref_id":"0012710"}}}


id: PBO:0041342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 3 open reading frame 49","termid":"PBO:0041342"}


id: MONDO:0957202
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure, X-linked, 7","secondary_identifiers":["MEDGEN:1840203","OMIM:301106","UMLS:C5829567","DOID:0070598"],"termid":"MONDO:0957202","xrefs":{"Monarch":{"xref_id":"0957202"}}}


id: PBO:0001955
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulates eng1","termid":"PBO:0001955"}


id: GO:0032662
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of interleukin-19 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"interleukin-19 production","termid":"GO:0032622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of interleukin-19 production","secondary_identifiers":["GO:0045384"],"synonyms":[{"name":"regulation of IL-19 production","type":"exact"},{"name":"regulation of interleukin-19 biosynthetic process","type":"narrow"}],"termid":"GO:0032662"}


id: PBO:0001600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-amylase homolog Mde5","termid":"PBO:0001600"}


id: PBO:0005057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element Wtf5","termid":"PBO:0005057"}


id: PBO:0091581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMN complex subunit Yip11/Gem2","termid":"PBO:0091581"}


id: GO:0097023
data:
  {"annotated_genes":["SJAG_04242"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[116441],"is_not":false,"summary":null,"term":"GO:0097023"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-fructose-6-phosphate = dihydroxyacetone + D-glyceraldehyde-3-phosphate.","definition_xrefs":["PMID:21290439","GOC:imk","PMID:11120740"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04242":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"fructose 6-phosphate aldolase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:28002"],"termid":"GO:0097023","terms_by_termid":{"GO:0097023":null}}


id: MOD:00762
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod N-linked glycosylation - missing ref","definition_xrefs":["Unimod:309"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"},{"relation_name":"is_a","term_name":"complex glycosylation","termid":"MOD:00725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"biantennary (-2 galactose) N4-glycosylated asparagine","synonyms":[{"name":"Biantennary (-2 galactose)","type":"related"},{"name":"Hex(3)HexNAc(4)","type":"related"}],"termid":"MOD:00762"}


id: GO:0045438
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the formation of delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine from constituent amino acids and ATP in the presence of magnesium ions and dithioerythritol.","definition_xrefs":["PMID:1572368","PMID:2061333"],"gene_count":0,"genotype_count":0,"name":"obsolete delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine synthetase activity (obsolete GO:0045438)","synonyms":[{"name":"ACV synthetase activity","type":"broad"}],"termid":"GO:0045438"}


id: MONDO:0014226
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare primary immunodeficiency disorder characterized by persistent CD4 T-cell lymphopenia (less than 300 cells/B5L on multiple occasions) not associated with any other underlying primary or secondary immune deficiency. Patients typically present opportunistic infections (with cryptococcal, mycobacterial, candidal, varicella zoster virus infections and progressive multifocal leukoencephalopathy being the most prevalent), malignancies (mainly lymphoproliferative disorders), or autoimmune disorders. Some individuals are asymptomatic and incidentally diagnosed.","definition_xrefs":["Orphanet:228000"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"non-SCID combined immunodeficiency","termid":"MONDO:0018814"},{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"},{"relation_name":"is_a","term_name":"idiopathic disease","termid":"MONDO:0700007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"idiopathic CD4 lymphocytopenia","secondary_identifiers":["DOID:0111987","SCTID:763713000","UMLS:C3809768","GARD:12375","icd11.foundation:1639000446","OMIM:615518","MEDGEN:816098"],"synonyms":[{"name":"ICL","type":"related"},{"name":"IMD13","type":"related"},{"name":"idiopathic CD4 positive T-lymphocytopenia","type":"related"},{"name":"idiopathic Cd4 lymphopenia","type":"related"},{"name":"immunodeficiency 13","type":"related"},{"name":"immunodeficiency type 13","type":"exact"}],"termid":"MONDO:0014226","xrefs":{"Monarch":{"xref_id":"0014226"}}}


id: PBO:0031632
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_spore_germination","termid":"PBO:0031632"}


id: FYPO:0007952
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell is normal (i.e. indistinguishable from wild type), during stationary phase. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein level","termid":"FYPO:0004083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal protein level during stationary phase","termid":"FYPO:0007952"}


id: GO:0050669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving homocysteine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of sulfur amino acid metabolic process","termid":"GO:0031336"},{"relation_name":"is_a","term_name":"negative regulation of amino acid metabolic process","termid":"GO:0045763"},{"relation_name":"is_a","term_name":"regulation of homocysteine metabolic process","termid":"GO:0050666"},{"relation_name":"negatively_regulates","term_name":"homocysteine metabolic process","termid":"GO:0050667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006790"},{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520","GO:0006790"],"is_obsolete":false,"name":"negative regulation of homocysteine metabolic process","synonyms":[{"name":"down regulation of homocysteine metabolic process","type":"exact"},{"name":"down-regulation of homocysteine metabolic process","type":"exact"},{"name":"downregulation of homocysteine metabolic process","type":"exact"},{"name":"inhibition of homocysteine metabolic process","type":"narrow"},{"name":"negative regulation of Hcy metabolic process","type":"exact"},{"name":"negative regulation of Hcy metabolism","type":"exact"},{"name":"negative regulation of homocysteine metabolism","type":"exact"}],"termid":"GO:0050669"}


id: MONDO:0021050
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant neoplasm affecting the vagina. Representative examples of benign neoplasms include squamous papilloma and melanocytic nevus. Representative examples of malignant neoplasms include carcinoma, melanoma, and sarcoma.","definition_xrefs":["NCIT:C3437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vaginal disorder","termid":"MONDO:0001433"},{"relation_name":"is_a","term_name":"female reproductive system neoplasm","termid":"MONDO:0021148"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vaginal neoplasm","secondary_identifiers":["ICD9:239.5","ONCOTREE:VULVA","MEDGEN:22608","UMLS:C0042258","SCTID:126921000","EFO:1001447"],"synonyms":[{"name":"neoplasm of the vagina","type":"exact"},{"name":"neoplasm of vagina","type":"exact"},{"name":"tumor of the vagina","type":"exact"},{"name":"tumor of vagina","type":"exact"},{"name":"tumour of the vagina","type":"exact"},{"name":"tumour of vagina","type":"exact"},{"name":"vagina neoplasm","type":"exact"},{"name":"vagina neoplasm (disease)","type":"exact"},{"name":"vagina tumor","type":"exact"},{"name":"vagina tumour","type":"exact"},{"name":"vaginal neoplasm","type":"exact"},{"name":"vaginal tumor","type":"exact"},{"name":"vaginal tumour","type":"exact"}],"termid":"MONDO:0021050","xrefs":{"Monarch":{"xref_id":"0021050"}}}


id: GO:0071584
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of zinc ion import.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of zinc ion transmembrane import","termid":"GO:0071581"},{"relation_name":"is_a","term_name":"negative regulation of zinc ion transmembrane transport","termid":"GO:0071583"},{"relation_name":"negatively_regulates","term_name":"zinc ion import across plasma membrane","termid":"GO:0071578"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"negative regulation of zinc ion transmembrane import","termid":"GO:0071584"}


id: PBO:0074194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 39 member 4","termid":"PBO:0074194"}


id: PBO:0046916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 30 member C","termid":"PBO:0046916"}


id: SO:0002093
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variant that impacts the internal interactions of the resulting polypeptide structure.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3D_polypeptide_structure_variant","termid":"SO:0001599"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"structural_interaction_variant","synonyms":[{"name":"structural interaction variant","type":"exact"}],"termid":"SO:0002093"}


id: PBO:0042844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 52","termid":"PBO:0042844"}


id: PBO:0073016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium channel epithelial 1 subunit gamma","termid":"PBO:0073016"}


id: GO:0140621
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A short filamentous structure on the surface of a bacterial cell distinguished from other pili by their D-mannose-sensitive agglutinatination of erythrocytes. In E. coli, type I pili consist of a short tip fibrillum made up of the adhesin protein (FimH) and two minor subunits (FimG and FimF) that is joined to the pilus rod, a homopolymer of ~1000 FimA subunits.","definition_xrefs":["PMID:28496159","PMID:29345620"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pilus","termid":"GO:0009289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"type I pilus","synonyms":[{"name":"type 1 pilus","type":"exact"},{"name":"type I fimbriae","type":"exact"},{"name":"type I pili","type":"exact"}],"termid":"GO:0140621"}


id: MONDO:0000730
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pontocerebellar hypoplasia (obsolete MONDO:0000730)","termid":"MONDO:0000730","xrefs":{"Monarch":{"xref_id":"0000730"}}}


id: PBO:0075033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 115-44","termid":"PBO:0075033"}


id: GO:0035137
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the hindlimb are generated and organized.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"limb morphogenesis","termid":"GO:0035108"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hindlimb morphogenesis","termid":"GO:0035137"}


id: PBO:0003554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic spindle checkpoint protein Mad1","termid":"PBO:0003554"}


id: MONDO:0015697
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inborn error of immunity","termid":"MONDO:0003778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunoglobulin heavy chain deficiency","secondary_identifiers":["SCTID:234539005","UMLS:C0398692","GARD:20111","MEDGEN:98309","icd11.foundation:960006636","ICD9:279.03","Orphanet:169110"],"termid":"MONDO:0015697","xrefs":{"Monarch":{"xref_id":"0015697"}}}


id: PBO:0088398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin Snx3","termid":"PBO:0088398"}


id: PBO:0017414
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-preceded_by","termid":"PBO:0017414"}


id: PR:Q09740
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glutamine--fructose-6-phosphate aminotransferase [isomerizing] that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamine--fructose-6-phosphate aminotransferase [isomerizing] (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC12C2.11","secondary_identifiers":["UniProtKB:Q09740"],"synonyms":[{"name":"D-fructose-6-phosphate amidotransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GFAT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-glmS","type":"exact"},{"name":"hexosephosphate aminotransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09740"}


id: GO:0061743
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism acquires a novel neuromuscular action or movement as the result of experience.","definition_xrefs":["Wikipedia:Motor_learning","GOC:bf","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"learning","termid":"GO:0007612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"motor learning","termid":"GO:0061743"}


id: PBO:0004317
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Aberrent Microtubules when Overexpressed","termid":"PBO:0004317"}


id: PBO:0061484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuregulin 3","termid":"PBO:0061484"}


id: GO:0141073
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont alters or subverts opsonization by the host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:28860090","PMID:18068388","PMID:2307127","PMID:18941224"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host defense response","termid":"GO:0052031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host opsonization","synonyms":[{"name":"disruption by symbiont of host opsonization","type":"exact"}],"termid":"GO:0141073"}


id: PBO:0075475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPATA31 subfamily A member 1","termid":"PBO:0075475"}


id: PBO:0002556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRIP domain protein (predicted)","termid":"PBO:0002556"}


id: PBO:0031892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxin-3 peroxisome import protein Pex3 (predicted)","termid":"PBO:0031892"}


id: GO:1904606
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in a fat cell.","definition_xrefs":["GO_REF:0000085","GOC:TermGenie","PMID:17024416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process","termid":"GO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fat cell apoptotic process","synonyms":[{"name":"adipocyte apoptosis","type":"narrow"},{"name":"adipocyte apoptotic process","type":"exact"},{"name":"adipose cell apoptosis","type":"narrow"},{"name":"adipose cell apoptotic process","type":"exact"},{"name":"fat cell apoptosis","type":"narrow"}],"termid":"GO:1904606"}


id: PBO:0049984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HILPDA antisense RNA 1","termid":"PBO:0049984"}


id: GO:2000650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of sodium ion transmembrane transporter activity.","definition_xrefs":["GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of sodium ion transmembrane transporter activity (obsolete GO:2000650)","synonyms":[{"name":"negative regulation of sodium transporter activity","type":"exact"}],"termid":"GO:2000650"}


id: GO:0060927
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of cells to pacemaker cell fates and their capacity to differentiate into pacemaker cells. Pacemaker cells are specialized cardiomyocytes that are responsible for regulating the timing of heart contractions.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac muscle cell fate commitment","termid":"GO:0060923"},{"relation_name":"part_of","term_name":"cardiac pacemaker cell differentiation","termid":"GO:0060920"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac pacemaker cell fate commitment","synonyms":[{"name":"pacemaker cell fate commitment","type":"broad"}],"termid":"GO:0060927"}


id: PATO:0001197
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001197 modified direction (obsolete PATO:0001197)","termid":"PATO:0001197"}


id: GO:0002947
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A receptor complex that contains one or more members of the tumor necrosis factor (TNF) receptor superfamily.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor complex","termid":"GO:0043235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"tumor necrosis factor receptor superfamily complex","synonyms":[{"name":"TNF receptor superfamily complex","type":"related"}],"termid":"GO:0002947"}


id: GO:0016825
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of any acid phosphorus-nitrogen bond.","definition_xrefs":["EC:3.9.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity","termid":"GO:0016787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"hydrolase activity, acting on acid phosphorus-nitrogen bonds","termid":"GO:0016825"}


id: GO:0060264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of a phase of elevated metabolic activity, during which oxygen consumption increases made as a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals.","definition_xrefs":["GOC:BHF","GOC:tb","GOC:dph","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immune effector process","termid":"GO:0002697"},{"relation_name":"is_a","term_name":"regulation of innate immune response","termid":"GO:0045088"},{"relation_name":"is_a","term_name":"regulation of inflammatory response","termid":"GO:0050727"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"is_a","term_name":"regulation of respiratory burst","termid":"GO:0060263"},{"relation_name":"regulates","term_name":"respiratory burst involved in inflammatory response","termid":"GO:0002536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of respiratory burst involved in inflammatory response","synonyms":[{"name":"regulation of respiratory burst involved in acute inflammatory response","type":"broad"}],"termid":"GO:0060264"}


id: PBO:0082524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cell cycle-regulated gene of unknown function; promoter bound by Fkh2p; null mutant is sensitive to expression of the top1-T722A allele; TDA7 has a paralog, YDL211C, that arose from the whole genome duplication","termid":"PBO:0082524"}


id: MONDO:0020079
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete plasma cell tumor (obsolete MONDO:0020079)","termid":"MONDO:0020079","xrefs":{"Monarch":{"xref_id":"0020079"}}}


id: PR:O14067
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1687.08 gene.","definition_xrefs":["UniProtKB:O14067","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1687.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.08","synonyms":[{"name":"Spom972h-SPAC1687.08","type":"exact"}],"termid":"PR:O14067"}


id: PBO:0068301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 6 pseudogene 1","termid":"PBO:0068301"}


id: PBO:0000819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydroxyacetone kinase Dak1","termid":"PBO:0000819"}


id: FYPO:0005993
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A metabolism phenotype observed in the vegetative growth phase of the life cycle in which translation in the cytoplasm is normal (i.e. indistinguishable from wild type). Translation is the synthesis of a protein using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain.","definition_xrefs":["GO:0002181","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translation phenotype","termid":"FYPO:0000291"},{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal cytoplasmic translation","synonyms":[{"name":"normal cytoplasmic protein biosynthesis","type":"exact"},{"name":"normal cytoplasmic protein synthesis","type":"exact"},{"name":"normal cytoplasmic translation during mitotic cell cycle","type":"related"},{"name":"normal cytoplasmic translation during vegetative growth","type":"exact"}],"termid":"FYPO:0005993"}


id: PBO:0034485
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_during_meiosis_I","termid":"PBO:0034485"}


id: GO:0051193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a cofactor.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cofactor metabolic process (obsolete GO:0051193)","synonyms":[{"name":"regulation of cofactor metabolism","type":"exact"}],"termid":"GO:0051193"}


id: PBO:0047421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box and WD repeat domain containing 11","termid":"PBO:0047421"}


id: SO:0001718
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 18th residue (a lysine), from the start of the H3 histone protein is acetylated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_3_acetylation_site","termid":"SO:0001973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3K18_acetylation_site","synonyms":[{"name":"H3K18 acetylation site","type":"exact"},{"name":"H3K18ac","type":"exact"}],"termid":"SO:0001718"}


id: MONDO:0002453
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pathological processes involving the vestibulocochlear nerve; brainstem; or central nervous system. When hearing loss is due to retrocochlear pathology, it is called retrocochlear hearing loss.","definition_xrefs":["MESH:D012181"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auditory system disorder","termid":"MONDO:0002409"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retrocochlear disease","secondary_identifiers":["UMLS:C0035352","DOID:2889","MEDGEN:11216"],"termid":"MONDO:0002453","xrefs":{"Monarch":{"xref_id":"0002453"}}}


id: PBO:0003698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HRD ubiquitin ligase complex subunit (predicted)","termid":"PBO:0003698"}


id: PBO:0063781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHD finger protein 6","termid":"PBO:0063781"}


id: GO:0047308
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-alanine + oxomalonate = aminomalonate + pyruvate.","definition_xrefs":["RHEA:18809","EC:2.6.1.47"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016769","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"alanine-oxomalonate transaminase activity","secondary_identifiers":["MetaCyc:2.6.1.47-RXN","KEGG_REACTION:R02970"],"synonyms":[{"name":"L-alanine-ketomalonate transaminase activity","type":"related"},{"name":"L-alanine:oxomalonate aminotransferase activity","type":"related"},{"name":"alanine--oxomalonate aminotransferase activity","type":"related"},{"name":"alanine-ketomalonate (mesoxalate) transaminase activity","type":"related"},{"name":"alanine-oxomalonate aminotransferase activity","type":"exact"}],"termid":"GO:0047308"}


id: MONDO:0859332
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"complex cortical dysplasia with other brain malformations","termid":"MONDO:0000904"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cortical dysplasia, complex, with other brain malformations 11","secondary_identifiers":["UMLS:C5774270","MEDGEN:1824043","OMIM:620156"],"termid":"MONDO:0859332","xrefs":{"Monarch":{"xref_id":"0859332"}}}


id: GO:1901928
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cadinene.","definition_xrefs":["PMID:22867794","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpene biosynthetic process","termid":"GO:0051762"},{"relation_name":"is_a","term_name":"cadinene metabolic process","termid":"GO:1901926"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"cadinene biosynthetic process","synonyms":[{"name":"cadinene anabolism","type":"exact"},{"name":"cadinene biosynthesis","type":"exact"},{"name":"cadinene formation","type":"exact"},{"name":"cadinene synthesis","type":"exact"}],"termid":"GO:1901928"}


id: PBO:0109221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin gamma complex component 2","termid":"PBO:0109221"}


id: FYPO:0002380
data:
  {"alleles_by_uniquename":{"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_01794:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01794","name":"scd2delta","uniquename":"SJAG_01794:allele-1"},"SJAG_02819:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02819","name":"efc25delta","uniquename":"SJAG_02819:allele-1"},"SJAG_03453:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03453","name":"ras1delta","uniquename":"SJAG_03453:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121422,121427,121433,121459],"is_not":false,"summary":null,"term":"FYPO:0002380"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is viable, and shaped in the form of a spheroid. In spheroid cells, there is much less difference between the long and short axes of the cell than in wild type. Spheroid cells may shorter than normal, with approximately the same diameter as normal, or they may be enlarged.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"spheroid vegetative cell","termid":"FYPO:0000021"},{"relation_name":"is_a","term_name":"spheroid vegetative cell","termid":"FYPO:0000021"},{"relation_name":"is_a","term_name":"viable vegetative cell with abnormal cell shape","termid":"FYPO:0002197"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00514":null,"SJAG_01794":null,"SJAG_02819":null,"SJAG_03453":null},"genotype_count":4,"genotypes_by_uniquename":{"efc25delta":{"display_name":"efc25delta","display_uniquename":"efc25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02819:allele-1","expression":"Null"}]}]},"ras1delta":{"display_name":"ras1delta","display_uniquename":"ras1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03453:allele-1","expression":"Null"}]}]},"scd1delta":{"display_name":"scd1delta","display_uniquename":"scd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00514:allele-1","expression":"Null"}]}]},"scd2delta":{"display_name":"scd2delta","display_uniquename":"scd2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01794:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000005","FYPO:0001985","FYPO:0000004","FYPO:0001320"],"is_obsolete":false,"name":"viable spheroid vegetative cell","references_by_uniquename":{"PMID:29566183":null},"single_locus_annotated_genes":["SJAG_03453","SJAG_00514","SJAG_02819","SJAG_01794"],"single_locus_genotype_uniquenames":["scd2delta","scd1delta","ras1delta","efc25delta"],"synonyms":[{"name":"spheroid viable cell","type":"exact"},{"name":"viable round vegetative cell","type":"related"},{"name":"viable rounded vegetative cell","type":"exact"},{"name":"viable spheroid cell","type":"exact"},{"name":"viable spheroid cell during vegetative growth","type":"exact"},{"name":"viable spheroid vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002380","terms_by_termid":{"FYECO:0000137":null,"FYPO:0002380":null}}


id: FYECO:0000220
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"A nitrogen source shift condition in which cells are first grown in a medium with glutamate as the nitrogen source, and then shifted to a medium with proline as the nitrogen source.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrogen source shift","termid":"FYECO:0000221"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nitrogen source shift, glutamate to proline","termid":"FYECO:0000220"}


id: SO:0001346
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_2_prime_O_dimethyluridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_two_prime_O_dimethyluridine","secondary_identifiers":["RNAMOD:054"],"synonyms":[{"name":"5,2'-O-dimethyluridine","type":"exact"},{"name":"five two prime O dimethyluridine","type":"exact"},{"name":"m5Um","type":"exact"}],"termid":"SO:0001346"}


id: PBO:0079110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA splicing endonuclease subunit 2","termid":"PBO:0079110"}


id: PBO:0058030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4251","termid":"PBO:0058030"}


id: PBO:0065172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prokineticin 2","termid":"PBO:0065172"}


id: PBO:0030459
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_biotin_import","termid":"PBO:0030459"}


id: GO:2000349
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of signaling via the CD40 signaling pathway.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of CD40 signaling pathway","termid":"GO:2000348"},{"relation_name":"negatively_regulates","term_name":"CD40 signaling pathway","termid":"GO:0023035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of CD40 signaling pathway","synonyms":[{"name":"negative regulation of CD40 signalling pathway","type":"exact"}],"termid":"GO:2000349"}


id: MONDO:0011934
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Dermatofibrosarcoma protuberans (DFSP) is a rare infiltrating soft tissue sarcoma, generally of low grade malignancy, arising from the dermis of the skin and characteristically associated with a specific chromosomal translocation t(17;22).","definition_xrefs":["Orphanet:31112"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete rare skin tumor or hamartoma (obsolete MONDO:0019300)","termid":"MONDO:0019300"},{"relation_name":"is_a","term_name":"integumentary system cancer","termid":"MONDO:0000653"},{"relation_name":"is_a","term_name":"fibrosarcoma","termid":"MONDO:0005164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"dermatofibrosarcoma protuberans","secondary_identifiers":["UMLS:C3693482","ICDO:8832/3","DOID:3507","MESH:D018223","MEDGEN:811326","MedDRA:10057070","ONCOTREE:DFSP","SCTID:276799004","NCIT:C4683","OMIM:607907","GARD:9569","icd11.foundation:1579898301"],"synonyms":[{"name":"DFSP","type":"exact"},{"name":"dermatofibrosarcoma","type":"exact"},{"name":"dermatofibrosarcoma protuberans","type":"exact"},{"name":"familial dermatofibrosarcoma protuberans (subtype)","type":"related"},{"name":"giant cell fibroblastoma","type":"related"},{"name":"metastatic dermatofibrosarcoma protuberans (subtype)","type":"related"}],"termid":"MONDO:0011934","xrefs":{"Monarch":{"xref_id":"0011934"}}}


id: GO:0061027
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the development of the umbilical cord, from its formation to the mature structure. The umbilical cord is an organ or embryonic origin consisting of the 2 umbilical arteries and the one umbilical vein. The umbilical cord connects the cardiovascular system of the fetus to the mother via the placenta.","definition_xrefs":["GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"umbilical cord development","termid":"GO:0061027"}


id: GO:0008946
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the exonucleolytic cleavage of oligonucleotides to yield nucleoside 5'-phosphates.","definition_xrefs":["EC:3.1.13.3"],"gene_count":0,"genotype_count":0,"name":"obsolete oligonucleotidase activity (obsolete GO:0008946)","secondary_identifiers":["MetaCyc:3.1.13.3-RXN"],"termid":"GO:0008946"}


id: PBO:0025533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein, CENP-C ortholog Cnp3","termid":"PBO:0025533"}


id: PBO:0053409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 345","termid":"PBO:0053409"}


id: PBO:0077992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRABD antisense RNA 1","termid":"PBO:0077992"}


id: RO:0002157
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of derived by descent from","direct_ancestors":[{"relation_name":"is_a","term_name":"evolutionarily_related_to","termid":"RO:0002320"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_derived_by_descendant","termid":"RO:0002157"}


id: GO:0004744
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: all-trans-retinal = 11-cis-retinal.","definition_xrefs":["PMID:21447403"],"gene_count":0,"genotype_count":0,"name":"obsolete retinal isomerase activity (obsolete GO:0004744)","synonyms":[{"name":"all-trans-retinal 11-cis-trans-isomerase activity","type":"related"},{"name":"retinene isomerase activity","type":"related"},{"name":"retinoid isomerase activity","type":"broad"}],"termid":"GO:0004744"}


id: PBO:0041300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C2 calcium dependent domain containing 4D","termid":"PBO:0041300"}


id: PBO:0051990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"janus kinase and microtubule interacting protein 2","termid":"PBO:0051990"}


id: PBO:0088049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin hydrolase; deubiquitinates intralumenal vesicle (ILVs) cargo proteins; required for recycling ubiquitin from proteasome-bound ubiquitinated intermediates, acts at the late endosome/prevacuolar compartment to recover ubiquitin from ubiquitinated membrane proteins destined for the vacuole; DOA4 has a paralog, UBP5, that arose from the whole genome duplication","termid":"PBO:0088049"}


id: PBO:0090913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Fcf2","termid":"PBO:0090913"}


id: GO:0036514
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemotaxis process that directs the migration of an axon growth cone of a dopaminergic neuron to a specific target site in response to a combination of attractive and repulsive cues.","definition_xrefs":["GOC:bf","PMID:23517308","GOC:PARL","PMID:21106844"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axon guidance","termid":"GO:0007411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dopaminergic neuron axon guidance","synonyms":[{"name":"DA axon guidance","type":"exact"},{"name":"dopaminergic axon guidance","type":"exact"},{"name":"mdDA axon guidance","type":"exact"}],"termid":"GO:0036514"}


id: PBO:0084823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein, regulator of COB mRNA stability and translation; interacts with the 5'-untranslated region of the COB mRNA; found in a complex at the inner membrane along with Pet309p; localizes to mitochondrial foci upon DNA replication stress","termid":"PBO:0084823"}


id: PBO:0033748
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_DNA_recombination_frequency_during_cellular_response_to_ionizing_radiation","termid":"PBO:0033748"}


id: GO:0052588
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-acetoin + NAD+ = diacetyl + H+ + NADH. This reaction is catalyzed in the reverse direction.","definition_xrefs":["RHEA:27286"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetoin dehydrogenase (NAD+) activity","termid":"GO:0019152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"diacetyl reductase ((S)-acetoin forming) (NAD+) activity","secondary_identifiers":["MetaCyc:RXN-11032","KEGG_REACTION:R09078","EC:1.1.1.304"],"synonyms":[{"name":"(S)-acetoin dehydrogenase activity","type":"related"}],"termid":"GO:0052588"}


id: PBO:0084187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Histone glutamine methyltransferase, modifies H2A at Q105 in nucleolus; component of the small subunit processome complex, which is required for processing of pre-18S rRNA; ortholog of mammalian fibrillarin; inviability of the null mutant is functionally complemented by human FBL","termid":"PBO:0084187"}


id: SO:0000764
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000764 BAC_clone (obsolete SO:0000764)","termid":"SO:0000764"}


id: SO:0000335
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A mRNA with a minus 2 frameshift.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"minus_2_frameshift","termid":"SO:0000867"},{"relation_name":"is_a","term_name":"mRNA_with_frameshift","termid":"SO:0000108"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA_with_minus_2_frameshift","synonyms":[{"name":"mRNA with minus 2 frameshift","type":"exact"}],"termid":"SO:0000335"}


id: GO:0003407
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the neural retina over time from its initial formation to the mature structure. The neural retina is the part of the retina that contains neurons and photoreceptor cells.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"retina development in camera-type eye","termid":"GO:0060041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural retina development","termid":"GO:0003407"}


id: MONDO:0012432
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Joubert syndrome in which the cause of the disease is a mutation in the CEP290 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Joubert syndrome with oculorenal defect","termid":"MONDO:0009480"},{"relation_name":"is_a","term_name":"Joubert syndrome","termid":"MONDO:0018772"},{"relation_name":"is_a","term_name":"CEP290-related ciliopathy","termid":"MONDO:0100451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0020022"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005559","MONDO:0020022"],"is_obsolete":false,"name":"Joubert syndrome 5","secondary_identifiers":["UMLS:C1857780","DOID:0111000","OMIM:610188","GARD:15475","MEDGEN:347545","MESH:C537688"],"synonyms":[{"name":"CEP290 Joubert syndrome","type":"exact"},{"name":"JBTS5","type":"exact"},{"name":"Joubert syndrome 5","type":"exact"},{"name":"Joubert syndrome caused by mutation in CEP290","type":"exact"},{"name":"Joubert syndrome type 5","type":"exact"}],"termid":"MONDO:0012432","xrefs":{"Monarch":{"xref_id":"0012432"}}}


id: PBO:0001061
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.3.1.2","termid":"PBO:0001061"}


id: GO:0032185
data:
  {"annotated_genes":["SJAG_00663","SJAG_01143","SJAG_03146","SJAG_00514","SJAG_00118","SJAG_04375","SJAG_02683","SJAG_01658"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112516],"is_not":false,"summary":null,"term":"GO:0032185"},{"annotations":[74069,61031,105716],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000921"},{"annotations":[99602,103563,71828,118883],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031106"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising septin complexes and their associated proteins.","definition_xrefs":["GOC:dph","GOC:jl","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeleton organization","termid":"GO:0007010"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00118":null,"SJAG_00514":null,"SJAG_00663":null,"SJAG_01143":null,"SJAG_01658":null,"SJAG_02683":null,"SJAG_03146":null,"SJAG_04375":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007010","GO:0008150"],"is_obsolete":false,"name":"septin cytoskeleton organization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"septin cytoskeleton organisation","type":"exact"},{"name":"septin cytoskeleton organization and biogenesis","type":"related"}],"termid":"GO:0032185","terms_by_termid":{"GO:0000921":null,"GO:0031106":null,"GO:0032185":null}}


id: GO:1902164
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator.","definition_xrefs":["GOC:TermGenie","PMID:17719541"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator (obsolete GO:1902164)","synonyms":[{"name":"activation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator","type":"narrow"},{"name":"up regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator","type":"exact"},{"name":"up-regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator","type":"exact"},{"name":"upregulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator","type":"exact"}],"termid":"GO:1902164"}


id: PBO:0061943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 1 subfamily R member 1 pseudogene","termid":"PBO:0061943"}


id: PBO:0027970
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_reactive_oxygen_species_level_during_nitrogen_starvation","termid":"PBO:0027970"}


id: FYPO:0007022
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the posttranscriptional methylation of a guanosine residue in a tRNA molecule to form 2'-O-methylguanosine does not occur.","definition_xrefs":["PMID:25404562","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal tRNA methylation","termid":"FYPO:0001766"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000294"],"is_obsolete":false,"name":"abolished tRNA guanosine 2'-O-methylation","synonyms":[{"name":"2'-O-methylguanosine absent from tRNA","type":"related"},{"name":"abolished tRNA 2'-O-methylguanosine formation","type":"exact"},{"name":"abolished tRNA Gm formation","type":"exact"},{"name":"abolished tRNA guanosine 2'-O-methylation during mitotic cell cycle","type":"related"},{"name":"abolished tRNA guanosine 2'-O-methylation during vegetative growth","type":"exact"},{"name":"tRNA guanosine 2'-O-methylation abolished","type":"exact"}],"termid":"FYPO:0007022"}


id: GO:0031864
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an EP1 subtype prostaglandin E2 receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prostanoid receptor binding","termid":"GO:0031862"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"EP1 subtype prostaglandin E2 receptor binding","synonyms":[{"name":"EP1 subtype prostaglandin E2 receptor ligand","type":"narrow"},{"name":"prostanoid EP1 receptor binding","type":"exact"}],"termid":"GO:0031864"}


id: FYPO:0007188
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing sampangine.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0002057","FYPO:0002058","FYPO:0002060","FYPO:0000257"],"is_obsolete":false,"name":"normal growth on sampangine","synonyms":[{"name":"normal cell population growth in presence of sampangine","type":"exact"},{"name":"normal cell population growth on sampangine","type":"exact"},{"name":"normal vegetative cell population growth on sampangine","type":"exact"}],"termid":"FYPO:0007188"}


id: PBO:0071600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 17","termid":"PBO:0071600"}


id: GO:0070668
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of mast cell proliferation.","definition_xrefs":["GOC:add","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte proliferation","termid":"GO:0070665"},{"relation_name":"is_a","term_name":"regulation of mast cell proliferation","termid":"GO:0070666"},{"relation_name":"positively_regulates","term_name":"mast cell proliferation","termid":"GO:0070662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mast cell proliferation","synonyms":[{"name":"activation of mast cell proliferation","type":"narrow"},{"name":"stimulation of mast cell proliferation","type":"narrow"},{"name":"up regulation of mast cell proliferation","type":"exact"},{"name":"up-regulation of mast cell proliferation","type":"exact"},{"name":"upregulation of mast cell proliferation","type":"exact"}],"termid":"GO:0070668"}


id: GO:1900069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellular hyperosmotic salinity response.","definition_xrefs":["GOC:TermGenie","PMID:16278455","GOC:dgf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular response to osmotic stress","termid":"GO:0106049"},{"relation_name":"is_a","term_name":"regulation of response to salt stress","termid":"GO:1901000"},{"relation_name":"regulates","term_name":"cellular hyperosmotic salinity response","termid":"GO:0071475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular hyperosmotic salinity response","synonyms":[{"name":"regulation of cellular response to hyperosmotic salt stress","type":"exact"}],"termid":"GO:1900069"}


id: MONDO:0005023
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma entirely confined to the mammary ducts. It is also known as DCIS. There is no evidence of invasion of the basement membrane. Currently, it is classified into three categories: High-grade DCIS, intermediate-grade DCIS and low-grade DCIS. In this classification the DCIS grade is defined by a combination of nuclear grade, architectural growth pattern and presence of necrosis. The size of the lesion as well as the grade and the clearance margins play a major role in dictating the most appropriate therapy for DCIS.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenocarcinoma in situ","termid":"MONDO:0003218"},{"relation_name":"is_a","term_name":"breast intraductal proliferative lesion","termid":"MONDO:0004007"},{"relation_name":"is_a","term_name":"breast carcinoma in situ","termid":"MONDO:0004658"},{"relation_name":"is_a","term_name":"breast ductal adenocarcinoma","termid":"MONDO:0005590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"ductal breast carcinoma in situ","secondary_identifiers":["DOID:0060074","ICDO:8500/2","MESH:D002285","EFO:0000432","ICD9:233.0","MEDGEN:765","NCIT:C2924","ONCOTREE:DCIS","UMLS:C0007124"],"synonyms":[{"name":"DCIS","type":"exact"},{"name":"breast ductal carcinoma in situ","type":"related"},{"name":"carcinoma in situ of mammary duct","type":"exact"},{"name":"ductal breast carcinoma in situ","type":"exact"},{"name":"ductal carcinoma in situ","type":"exact"},{"name":"ductal carcinoma in situ (DCIS)","type":"exact"},{"name":"ductal carcinoma in situ of breast","type":"exact"},{"name":"ductal carcinoma in situ of the breast","type":"exact"},{"name":"intraductal breast carcinoma","type":"exact"},{"name":"intraductal carcinoma","type":"exact"},{"name":"intraductal carcinoma of breast","type":"exact"},{"name":"intraductal carcinoma of the breast","type":"exact"},{"name":"mammary duct carcinoma in situ","type":"exact"},{"name":"mammary duct in situ carcinoma","type":"exact"},{"name":"non-infiltrating ductal adenocarcinoma of breast","type":"exact"},{"name":"non-infiltrating ductal adenocarcinoma of the breast","type":"exact"},{"name":"non-infiltrating ductal breast adenocarcinoma","type":"exact"},{"name":"non-infiltrating ductal breast carcinoma","type":"exact"},{"name":"non-infiltrating ductal carcinoma of breast","type":"exact"},{"name":"non-infiltrating ductal carcinoma of the breast","type":"exact"},{"name":"non-infiltrating intraductal adenocarcinoma","type":"exact"},{"name":"non-infiltrating intraductal adenocarcinoma of breast","type":"exact"},{"name":"non-infiltrating intraductal adenocarcinoma of the breast","type":"exact"},{"name":"non-infiltrating intraductal breast adenocarcinoma","type":"exact"},{"name":"non-infiltrating intraductal carcinoma","type":"exact"},{"name":"non-invasive ductal adenocarcinoma of breast","type":"exact"},{"name":"non-invasive ductal adenocarcinoma of the breast","type":"exact"},{"name":"non-invasive ductal breast adenocarcinoma","type":"exact"},{"name":"non-invasive ductal breast carcinoma","type":"exact"},{"name":"non-invasive ductal carcinoma of breast","type":"exact"},{"name":"non-invasive ductal carcinoma of the breast","type":"exact"},{"name":"non-invasive intraductal adenocarcinoma of breast","type":"exact"},{"name":"non-invasive intraductal adenocarcinoma of the breast","type":"exact"},{"name":"non-invasive intraductal breast adenocarcinoma","type":"exact"},{"name":"stage 0 mammary duct carcinoma","type":"exact"}],"termid":"MONDO:0005023","xrefs":{"Monarch":{"xref_id":"0005023"}}}


id: MONDO:1060117
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any neurodevelopmental disorder in which the cause of the disease is a mutation in the MYCBP2 gene. This condition is characterized by variable corpus callosum defects consistent with dysgenesis, and a broad spectrum of neurobehavioural deficits including developmental delay, intellectual disability, epilepsy, and autistic features.","definition_xrefs":["PMID:36200388"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurodevelopmental disorder","termid":"MONDO:0700092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"MYCBP2-related developmental delay with corpus callosum defects","synonyms":[{"name":"MDCD","type":"exact"},{"name":"MYCBP2-related developmental delay with corpus callosum defects","type":"exact"}],"termid":"MONDO:1060117","xrefs":{"Monarch":{"xref_id":"1060117"}}}


id: FYPO:0002330
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 4 of histone H3 is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone methylation during vegetative growth","termid":"FYPO:0000457"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0002274","FYPO:0002494"],"is_obsolete":false,"name":"abnormal histone H3-K4 methylation during vegetative growth","synonyms":[{"name":"abnormal histone H3 K4 methylation during vegetative growth","type":"exact"},{"name":"abnormal histone H3-K4 methylation during mitotic cell cycle","type":"related"},{"name":"abnormal histone H3K4me during vegetative growth","type":"exact"},{"name":"abnormal histone lysine H3 K4 methylation during vegetative growth","type":"exact"}],"termid":"FYPO:0002330"}


id: PBO:0004471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SR family protein, human SRFS2 ortholog Srp1","termid":"PBO:0004471"}


id: SO:0002383
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variant that has been found to be pathogenic in the context of a neoplastic disease.","definition_xrefs":["PMID:35101336"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disease_associated_variant","termid":"SO:0001771"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oncogenic_variant","termid":"SO:0002383"}


id: MONDO:0020430
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cor triatriatum sinister (CTS) results when the left atrium is divided into two compartments by a membrane. The membrane can vary in size and shape and may have one or more openings. Severe cases of cor triatriatum sinister usually present in infancy and are often associated with other heart defects. In less severe cases, the diagnosis may not be made until later in life. The specific symptoms depend on the degree to which the membrane obstructs the flow of blood and whether or not there are additional heart defects. Symptoms may range from mild shortness of breath during exercise to signs of heart failure and lung congestion. Some people with CTS may not have symptoms. Treatment varies according to the severity of the symptoms. For symptomatic patients, surgery is generally consideredthe definitive course of therapy.","direct_ancestors":[{"relation_name":"is_a","term_name":"triatrial heart","termid":"MONDO:0015450"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cor triatriatum sinister","secondary_identifiers":["MEDGEN:576445","UMLS:C0344712","icd11.foundation:90967508","GARD:12484","SCTID:253353007","ICD9:746.89","Orphanet:99099"],"synonyms":[{"name":"cor triatriatum sinistrum","type":"exact"},{"name":"divided left atrium","type":"exact"}],"termid":"MONDO:0020430","xrefs":{"Monarch":{"xref_id":"0020430"}}}


id: PBO:0072289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S24 pseudogene 7","termid":"PBO:0072289"}


id: GO:0003835
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: CMP-N-acetylneuraminate + beta-D-galactoside = N-acetyl-alpha-neuraminyl-(2->6)-beta-D-galactosyl derivative + CMP + H+.","definition_xrefs":["EC:2.4.3.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sialyltransferase activity","termid":"GO:0008373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016757","GO:0003674"],"is_obsolete":false,"name":"beta-galactoside alpha-2,6-sialyltransferase activity","secondary_identifiers":["RHEA:52104","Reactome:R-HSA-975902","Reactome:R-HSA-977071","MetaCyc:RXN-18268","Reactome:R-HSA-4085033"],"synonyms":[{"name":"CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,6-sialyltransferase activity","type":"related"},{"name":"beta-galactosamide alpha-2,6-sialyltransferase activity","type":"exact"},{"name":"beta-galactoside alpha-(2,6)-sialyltransferase","type":"exact"},{"name":"lactosylceramide alpha-2,6-N-sialyltransferase","type":"related"}],"termid":"GO:0003835"}


id: PBO:0089193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein light chain Dlc2","termid":"PBO:0089193"}


id: PBO:0044724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD/H-box helicase 11 like 11 (pseudogene)","termid":"PBO:0044724"}


id: PBO:0046639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group W member 20","termid":"PBO:0046639"}


id: PBO:0083658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endonuclease required for telomere elongation; required for telomeric 5' C-rich strand resection; involved in ds-break repair and processing hairpin DNA structures with the MRX complex; function requires sumoylation and phosphorylation; exists as inactive oligomers that are transiently released into smaller active units by phosphorylation; DNA damage triggers Sae2p removal, so active Sae2p is present only transiently; sequence and functional similarity with human CtIP/RBBP8","termid":"PBO:0083658"}


id: GO:1902425
data:
  {"annotated_genes":["SJAG_04280","SJAG_01805","SJAG_05290","SJAG_03126","SJAG_04140","SJAG_01837","SJAG_00082","SJAG_03048"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106985,113793,117849],"is_not":false,"summary":null,"term":"GO:1902425"},{"annotations":[104179,113033,95581,118522,91773],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140429"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation.","definition_xrefs":["GOC:TermGenie","PMID:22065639"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of attachment of spindle microtubules to kinetochore","termid":"GO:0051987"},{"relation_name":"is_a","term_name":"regulation of attachment of mitotic spindle microtubules to kinetochore","termid":"GO:1902423"},{"relation_name":"positively_regulates","term_name":"attachment of mitotic spindle microtubules to kinetochore","termid":"GO:0051315"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_03048":null,"SJAG_03126":null,"SJAG_04140":null,"SJAG_04280":null,"SJAG_05290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0000070"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0000070"],"is_obsolete":false,"name":"positive regulation of attachment of mitotic spindle microtubules to kinetochore","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of attachment of spindle microtubules to kinetochore during mitosis","type":"related"},{"name":"activation of attachment of spindle microtubules to kinetochore involved in mitosis","type":"narrow"},{"name":"activation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation","type":"narrow"},{"name":"activation of attachment of spindle microtubules to mitotic chromosome","type":"narrow"},{"name":"activation of mitotic bipolar attachment","type":"related"},{"name":"positive regulation of attachment of spindle microtubules to kinetochore during mitosis","type":"related"},{"name":"positive regulation of attachment of spindle microtubules to kinetochore involved in mitosis","type":"exact"},{"name":"positive regulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation","type":"exact"},{"name":"positive regulation of attachment of spindle microtubules to mitotic chromosome","type":"exact"},{"name":"positive regulation of mitotic bipolar attachment","type":"related"},{"name":"up regulation of attachment of spindle microtubules to kinetochore during mitosis","type":"related"},{"name":"up regulation of attachment of spindle microtubules to kinetochore involved in mitosis","type":"exact"},{"name":"up regulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation","type":"exact"},{"name":"up regulation of attachment of spindle microtubules to mitotic chromosome","type":"exact"},{"name":"up regulation of mitotic bipolar attachment","type":"related"},{"name":"up-regulation of attachment of spindle microtubules to kinetochore during mitosis","type":"related"},{"name":"up-regulation of attachment of spindle microtubules to kinetochore involved in mitosis","type":"exact"},{"name":"up-regulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation","type":"exact"},{"name":"up-regulation of attachment of spindle microtubules to mitotic chromosome","type":"exact"},{"name":"up-regulation of mitotic bipolar attachment","type":"related"},{"name":"upregulation of attachment of spindle microtubules to kinetochore during mitosis","type":"related"},{"name":"upregulation of attachment of spindle microtubules to kinetochore involved in mitosis","type":"exact"},{"name":"upregulation of attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation","type":"exact"},{"name":"upregulation of attachment of spindle microtubules to mitotic chromosome","type":"exact"},{"name":"upregulation of mitotic bipolar attachment","type":"related"}],"termid":"GO:1902425","terms_by_termid":{"GO:0140429":null,"GO:1902425":null}}


id: PBO:0072390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 16","termid":"PBO:0072390"}


id: GO:0045327
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a covalent cross-link between DNA and a peptidyl-tyrosine residue.","definition_xrefs":["GOC:jsg"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-DNA covalent cross-linking via peptidyl-tyrosine (obsolete GO:0045327)","synonyms":[{"name":"DNA-protein covalent cross-linking via peptidyl-tyrosine","type":"exact"}],"termid":"GO:0045327"}


id: PATO:0000584
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An increased size quality inhering in a bearer by virtue of the bearer's exhibiting enlargement of a cell or constituent group of cells (for example, organ).","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased volume","termid":"PATO:0000595"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypertrophic","synonyms":[{"name":"hypertrophy","type":"narrow"}],"termid":"PATO:0000584"}


id: PBO:0057566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 761","termid":"PBO:0057566"}


id: MOD:02076
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an L-arginine residue coordinated to one or more metal atoms or metal clusters.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-arginine residue","termid":"MOD:00902"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metal or metal cluster coordinated L-arginine residue","termid":"MOD:02076"}


id: MONDO:0004331
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A adenocarcinoma that involves the urachus.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urachus cancer","termid":"MONDO:0001378"},{"relation_name":"is_a","term_name":"bladder adenocarcinoma","termid":"MONDO:0002751"},{"relation_name":"is_a","term_name":"bladder urachal carcinoma","termid":"MONDO:0003715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"bladder urachal adenocarcinoma","secondary_identifiers":["UMLS:C2931201","DOID:7694","MEDGEN:419014","MESH:C536474","ONCOTREE:UA","NCIT:C39843"],"synonyms":[{"name":"adenocarcinoma of the urachus","type":"related"},{"name":"bladder urachal adenocarcinoma","type":"exact"},{"name":"urachal adenocarcinoma","type":"related"},{"name":"urachus adenocarcinoma","type":"exact"}],"termid":"MONDO:0004331","xrefs":{"Monarch":{"xref_id":"0004331"}}}


id: SO:0000949
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A site at which replicated bacterial circular chromosomes are decatenated by site specific resolvase.","definition_xrefs":["SO:as"],"direct_ancestors":[{"relation_name":"is_a","term_name":"resolution_site","termid":"SO:0000947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dif_site","synonyms":[{"name":"dif site","type":"exact"}],"termid":"SO:0000949"}


id: GO:0150179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of phosphatidylserine metabolic process.","definition_xrefs":["GOC:aruk","GOC:bc","PMID:30074985"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phosphatidylserine metabolic process","termid":"GO:0150178"},{"relation_name":"is_a","term_name":"positive regulation of phospholipid metabolic process","termid":"GO:1903727"},{"relation_name":"positively_regulates","term_name":"phosphatidylserine metabolic process","termid":"GO:0006658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"positive regulation of phosphatidylserine metabolic process","termid":"GO:0150179"}


id: PBO:0090718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"19S proteasome base subcomplex ATPase subunit Rpt3","termid":"PBO:0090718"}


id: GO:0080113
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of growth of the seed of an plant.","definition_xrefs":["PMID:19141706"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental growth","termid":"GO:0048638"},{"relation_name":"regulates","term_name":"seed growth","termid":"GO:0080112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of seed growth","synonyms":[{"name":"regulation of seed size","type":"exact"}],"termid":"GO:0080113"}


id: MONDO:0016789
data:
  {"annotated_genes":["SJAG_02107","SJAG_01924","SJAG_02009","SJAG_02158","SJAG_03660","SJAG_03064","SJAG_00605","SJAG_00839","SJAG_00866","SJAG_03310","SJAG_02796","SJAG_04192","SJAG_02006","SJAG_03290","SJAG_02369","SJAG_00461","SJAG_04334","SJAG_03553","SJAG_04495","SJAG_03247"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88828,88827],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011534"},{"annotations":[86892,86890,86891],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013046"},{"annotations":[89003],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010392"},{"annotations":[87578],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009865"},{"annotations":[87414],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009295"},{"annotations":[87925],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013275"},{"annotations":[88233,88234],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011236"},{"annotations":[88392],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013762"},{"annotations":[89035],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014674"},{"annotations":[86875,86876],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007453"},{"annotations":[87902],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013877"},{"annotations":[88208,88207],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009340"},{"annotations":[88153,88154],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100165"},{"annotations":[88181],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010717"},{"annotations":[87661],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013580"},{"annotations":[88523],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009502"},{"annotations":[86946],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009529"},{"annotations":[88524],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009503"},{"annotations":[88179],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012120"},{"annotations":[87335],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009950"},{"annotations":[88947],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007067"},{"annotations":[87527],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014221"}]},"cv_name":"mondo","definition":"An inherited metabolic disease that is has its basis in the disruption of pyruvate metabolic process.","definition_xrefs":["MONDO:patterns/inborn_metabolic"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of amino acid and other organic acid metabolism","termid":"MONDO:0019189"},{"relation_name":"is_a","term_name":"inborn disorder of energy metabolism","termid":"MONDO:0019243"},{"relation_name":"is_a","term_name":"disorder of organic acid metabolism","termid":"MONDO:0045022"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00461":null,"SJAG_00605":null,"SJAG_00839":null,"SJAG_00866":null,"SJAG_01924":null,"SJAG_02006":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02158":null,"SJAG_02369":null,"SJAG_02796":null,"SJAG_03064":null,"SJAG_03247":null,"SJAG_03290":null,"SJAG_03310":null,"SJAG_03553":null,"SJAG_03660":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"pyruvate metabolism disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:20752","Orphanet:254746","MEDGEN:1842590","UMLS:C0268192"],"synonyms":[{"name":"inborn error of pyruvate metabolic process","type":"exact"},{"name":"inborn pyruvate metabolic process disorder","type":"exact"},{"name":"rare inborn error of pyruvate metabolic process","type":"exact"}],"termid":"MONDO:0016789","terms_by_termid":{"MONDO:0007067":null,"MONDO:0007453":null,"MONDO:0009295":null,"MONDO:0009340":null,"MONDO:0009502":null,"MONDO:0009503":null,"MONDO:0009529":null,"MONDO:0009865":null,"MONDO:0009950":null,"MONDO:0010392":null,"MONDO:0010717":null,"MONDO:0011236":null,"MONDO:0011534":null,"MONDO:0012120":null,"MONDO:0013046":null,"MONDO:0013275":null,"MONDO:0013580":null,"MONDO:0013762":null,"MONDO:0013877":null,"MONDO:0014221":null,"MONDO:0014674":null,"MONDO:0100165":null},"xrefs":{"Monarch":{"xref_id":"0016789"}}}


id: GO:0047601
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetate + diphosphate = acetyl phosphate + phosphate.","definition_xrefs":["EC:2.7.2.12","RHEA:24276"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, carboxyl group as acceptor","termid":"GO:0016774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016301","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"acetate kinase (diphosphate) activity","secondary_identifiers":["MetaCyc:ACETATE-KINASE-PYROPHOSPHATE-RXN","KEGG_REACTION:R00320"],"synonyms":[{"name":"acetate kinase (pyrophosphate) activity","type":"related"},{"name":"diphosphate:acetate phosphotransferase activity","type":"related"},{"name":"pyrophosphate-acetate phosphotransferase activity","type":"related"}],"termid":"GO:0047601"}


id: PBO:0052198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium calcium-activated channel subfamily N member 2","termid":"PBO:0052198"}


id: PBO:0028127
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_valinomycin","termid":"PBO:0028127"}


id: FYPO:0001947
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype in which progression through the mitotic cell cycle is arrested in anaphase under conditions where arrest does not normally occur, and sister chromatids have not separated. The unseparated chromosomes remain condensed.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete abnormal cell cycle arrest in mitotic anaphase, with unseparated sister chromatids (obsolete FYPO:0001947)","synonyms":[{"name":"abnormal cell cycle arrest in mitotic anaphase, with unseparated sister chromatids, during vegetative growth","type":"exact"},{"name":"abnormal cell cycle arrest in mitotic anaphase, with unseparated, condensed chromosomes","type":"exact"},{"name":"abnormal cell cycle arrest in mitotic anaphase, with unseparated, condensed sister chromatids","type":"exact"},{"name":"abnormal mitotic cell cycle arrest in anaphase, with unseparated sister chromatids","type":"exact"},{"name":"absence of chromosome separation, abnormal mitotic anaphase arrest with condensed chromosomes","type":"exact"}],"termid":"FYPO:0001947"}


id: MONDO:0020369
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chandler syndrome, the most frequent clinical variant of iridocorneal endothelial (ICE) syndrome, is characterized by very few iris abnormalities but more severe corneal edema and less severe secondary glaucoma than seen in the other two ICE syndrome variants: Cogan-Reese syndrome and essential iris atrophy.","definition_xrefs":["Orphanet:98979"],"direct_ancestors":[{"relation_name":"is_a","term_name":"corneal dystrophy","termid":"MONDO:0018102"},{"relation_name":"is_a","term_name":"iridocorneal endothelial syndrome","termid":"MONDO:0018988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"Chandler syndrome","secondary_identifiers":["DOID:11554","SCTID:416960004","icd11.foundation:806443940","ICD9:371.57","NORD:918","GARD:6033","UMLS:C0544008","MedDRA:10057487","MEDGEN:107777"],"synonyms":[{"name":"Chandler's Syndrome","type":"exact"},{"name":"Chandler's syndrome","type":"exact"},{"name":"dystrophy of corneal endothelium","type":"exact"},{"name":"endothelial corneal dystrophy","type":"exact"},{"name":"posterior membrane corneal dystrophy","type":"exact"}],"termid":"MONDO:0020369","xrefs":{"Monarch":{"xref_id":"0020369"}}}


id: PBO:0117142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THUMP domain 1 NAT10 acetyltransferase adaptor","termid":"PBO:0117142"}


id: GO:1905955
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of endothelial tube morphogenesis.","definition_xrefs":["GOC:BHF","GO_REF:0000058","GOC:TermGenie","GOC:rph","PMID:25961718","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of endothelial tube morphogenesis","termid":"GO:1901509"},{"relation_name":"is_a","term_name":"negative regulation of morphogenesis of an epithelium","termid":"GO:1905331"},{"relation_name":"negatively_regulates","term_name":"endothelial tube morphogenesis","termid":"GO:0061154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of endothelial tube morphogenesis","synonyms":[{"name":"down regulation of endothelial tube morphogenesis","type":"exact"},{"name":"down-regulation of endothelial tube morphogenesis","type":"exact"},{"name":"downregulation of endothelial tube morphogenesis","type":"exact"},{"name":"inhibition of endothelial tube morphogenesis","type":"narrow"}],"termid":"GO:1905955"}


id: PBO:0029800
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-thick_actin_cables","termid":"PBO:0029800"}


id: GO:0032042
data:
  {"annotated_genes":["SJAG_03906","SJAG_03780","SJAG_03724","SJAG_04752","SJAG_00198","SJAG_01262","SJAG_00611","SJAG_01807","SJAG_00153","SJAG_04064","SJAG_02658","SJAG_03957","SJAG_03068","SJAG_05280","SJAG_02528","SJAG_01648","SJAG_01948"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94335,96513,98902,104294,113416],"is_not":false,"summary":null,"term":"GO:0032042"},{"annotations":[92150],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032043"},{"annotations":[115740,77955,97926,104698,114353,110368,72890,104678,101090],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043504"},{"annotations":[76519],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006264"},{"annotations":[97527],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0090297"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving mitochondrial DNA.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolic process","termid":"GO:0006259"},{"relation_name":"part_of","term_name":"mitochondrial genome maintenance","termid":"GO:0000002"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00153":null,"SJAG_00198":null,"SJAG_00611":null,"SJAG_01262":null,"SJAG_01648":null,"SJAG_01807":null,"SJAG_01948":null,"SJAG_02528":null,"SJAG_02658":null,"SJAG_03068":null,"SJAG_03724":null,"SJAG_03780":null,"SJAG_03906":null,"SJAG_03957":null,"SJAG_04064":null,"SJAG_04752":null,"SJAG_05280":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0007005"],"is_obsolete":false,"name":"mitochondrial DNA metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrial DNA metabolism","type":"exact"},{"name":"mtDNA metabolic process","type":"exact"},{"name":"mtDNA metabolism","type":"exact"}],"termid":"GO:0032042","terms_by_termid":{"GO:0006264":null,"GO:0032042":null,"GO:0032043":null,"GO:0043504":null,"GO:0090297":null}}


id: PBO:0053545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 551","termid":"PBO:0053545"}


id: MONDO:0003052
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chronic inflammation of the endometrium characterized by the presence of epithelioid granulomas. Causes include tuberculosis, fungal infections, parasitic infections, and sarcoidosis.","definition_xrefs":["NCIT:C27626"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chronic endometritis","termid":"MONDO:0024279"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"granulomatous endometritis","secondary_identifiers":["MEDGEN:234322","UMLS:C1333876","DOID:4561"],"synonyms":[{"name":"granulomatous endometritis","type":"exact"}],"termid":"MONDO:0003052","xrefs":{"Monarch":{"xref_id":"0003052"}}}


id: PBO:0000312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Proline","termid":"PBO:0000312"}


id: GO:0098651
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any collagen timer that is part of a basement membrane.","definition_xrefs":["GOC:dos","PMID:21421911"],"gene_count":0,"genotype_count":0,"name":"obsolete basement membrane collagen trimer (obsolete GO:0098651)","termid":"GO:0098651"}


id: GO:0140881
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of the fungal metabolite terrein.","definition_xrefs":["PMID:24816227","PMID:25852654"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of secondary metabolite biosynthetic process","termid":"GO:1900378"},{"relation_name":"is_a","term_name":"positive regulation of alcohol biosynthetic process","termid":"GO:1902932"},{"relation_name":"positively_regulates","term_name":"terrein biosynthetic process","termid":"GO:0140880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"positive regulation terrein biosynthetic process","termid":"GO:0140881"}


id: GO:0090399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which normal somatic cells reach an irreversible stage of cell cycle arrest following multiple rounds of replication; this end stage is associated with marked changes in gene expression and function. This is a natural barrier to unlimited proliferation of somatic cells, and is believed to be contolled by telomere shortening.","definition_xrefs":["PMID:23061726","PMID:17014937"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"replicative senescence","termid":"GO:0090399"}


id: PBO:0043563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type VI alpha 2 chain","termid":"PBO:0043563"}


id: PBO:0050298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 like 3","termid":"PBO:0050298"}


id: GO:0070638
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any pyridine nucleoside, a nucleoside in which a pyridine base covalently bonded to a sugar, usually ribose.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside catabolic process","termid":"GO:0009164"},{"relation_name":"is_a","term_name":"pyridine nucleoside metabolic process","termid":"GO:0070637"},{"relation_name":"is_a","term_name":"pyridine-containing compound catabolic process","termid":"GO:0072526"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"pyridine nucleoside catabolic process","synonyms":[{"name":"pyridine nucleoside breakdown","type":"exact"},{"name":"pyridine nucleoside catabolism","type":"exact"},{"name":"pyridine nucleoside degradation","type":"exact"}],"termid":"GO:0070638"}


id: GO:0075050
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates, maintains or increases the frequency, rate or extent of symbiont cell wall strengthening during entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of symbiont cell wall strengthening involved in entry into host (obsolete GO:0075050)","synonyms":[{"name":"positive regulation of symbiont cell wall strengthening during entry into host","type":"related"}],"termid":"GO:0075050"}


id: PBO:0000008
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-occurs_in","termid":"PBO:0000008"}


id: MONDO:0005573
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete type II hypersensitivity reaction disease (obsolete MONDO:0005573)","termid":"MONDO:0005573","xrefs":{"Monarch":{"xref_id":"0005573"}}}


id: MONDO:0002771
data:
  {"annotated_genes":["SJAG_02194","SJAG_05979","SJAG_00566","SJAG_03855","SJAG_01836","SJAG_03125"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86785],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0800029"},{"annotations":[88307],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957261"},{"annotations":[88306],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957263"},{"annotations":[88072],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957294"},{"annotations":[87903],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013878"},{"annotations":[87026],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014612"},{"annotations":[88892],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030690"}]},"cv_name":"mondo","definition":"Chronic progressive interstitial lung disorder characterized by the replacement of the lung tissue by connective tissue, leading to progressive dyspnea, respiratory failure, or right heart failure. Causes include chronic inflammatory processes, exposure to environmental irritants, radiation therapy, autoimmune disorders, certain drugs, or it may be idiopathic (no identifiable cause).","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interstitial lung disease","termid":"MONDO:0015925"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00566":null,"SJAG_01836":null,"SJAG_02194":null,"SJAG_03125":null,"SJAG_03855":null,"SJAG_05979":null},"genotype_count":0,"is_obsolete":false,"name":"pulmonary fibrosis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0034069","MEDGEN:11028","SCTID:51615001","NCIT:C26869","DOID:3770","EFO:0009448","MESH:D011658"],"synonyms":[{"name":"fibrosis of lung","type":"exact"},{"name":"pulmonary interstitial fibrosis","type":"exact"}],"termid":"MONDO:0002771","terms_by_termid":{"MONDO:0013878":null,"MONDO:0014612":null,"MONDO:0030690":null,"MONDO:0800029":null,"MONDO:0957261":null,"MONDO:0957263":null,"MONDO:0957294":null},"xrefs":{"Monarch":{"xref_id":"0002771"}}}


id: GO:0000909
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a fruiting body organ over time, from its formation to the mature structure. The fruiting body is a spore bearing structure. In fungi, the sporocarp (also known as fruiting body) is a multicellular structure on which spore-producing structures, such as basidia or asci, are borne. The fruiting body is part of the sexual phase of a fungal life cycle, with the rest of the life cycle being characterized by vegetative mycelial growth. The sporocarp of a basidiomycete is known as a basidiocarp, while the fruiting body of an ascomycete is known as an ascocarp. A significant range of different shapes and morphologies is found in both basidiocarps and ascocarps; these features play an important role in the identification and taxonomy of fungi.","definition_xrefs":["GOC:mtg_sensu","GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sporocarp development","termid":"GO:0030584"},{"relation_name":"part_of","term_name":"sexual reproduction","termid":"GO:0019953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sporocarp development involved in sexual reproduction","synonyms":[{"name":"ascus development","type":"narrow"},{"name":"fruiting body development involved in sexual reproduction","type":"broad"},{"name":"fruiting body formation involved in sexual reproduction","type":"broad"},{"name":"perfect stage fruiting body development","type":"narrow"}],"termid":"GO:0000909"}


id: PBO:0001503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uridine ribohydrolase (predicted)","termid":"PBO:0001503"}


id: PBO:0079898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinol-cytochrome c reductase, complex III subunit X","termid":"PBO:0079898"}


id: PBO:0055004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2419","termid":"PBO:0055004"}


id: MONDO:0024676
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A Wilms tumor of the kidney which occurs in children.","definition_xrefs":["NCIT:C27730"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney Wilms tumor","termid":"MONDO:0019004"},{"relation_name":"is_a","term_name":"childhood malignant kidney neoplasm","termid":"MONDO:0036511"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005240"],"is_obsolete":false,"name":"childhood kidney Wilms tumor","secondary_identifiers":["UMLS:C1333015","MEDGEN:232073"],"synonyms":[{"name":"Wilms tumor","type":"broad"},{"name":"Wilms tumour","type":"broad"},{"name":"childhood Wilms tumor","type":"exact"},{"name":"childhood Wilms tumour","type":"exact"},{"name":"childhood kidney Wilms tumor","type":"exact"},{"name":"childhood renal Wilms tumor","type":"exact"},{"name":"childhood renal Wilms tumour","type":"exact"},{"name":"childhood renal Wilms' tumor","type":"exact"},{"name":"childhood renal Wilms' tumour","type":"exact"},{"name":"kidney Wilms tumor","type":"broad"},{"name":"kidney Wilms tumour","type":"broad"}],"termid":"MONDO:0024676","xrefs":{"Monarch":{"xref_id":"0024676"}}}


id: FYPO:0001393
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which the activation of monopolar cell growth, i.e. the initiation of growth at the old end of a cell following cell division, is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of cell growth","termid":"FYPO:0001392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal activation of monopolar cell growth","synonyms":[{"name":"abnormal regulation of monopolar vegetative cell growth","type":"related"}],"termid":"FYPO:0001393"}


id: PBO:0059943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 29","termid":"PBO:0059943"}


id: PBO:0065800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB1A, member RAS oncogene family","termid":"PBO:0065800"}


id: PBO:0042763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 57","termid":"PBO:0042763"}


id: PR:Q9UTB3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- deg1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTB3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA pseudouridine synthase C25B8.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25B8.05","synonyms":[{"name":"Spom972h-deg1","type":"exact"}],"termid":"PR:Q9UTB3"}


id: MONDO:1012291
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neonatal hepatitis, non-human animal","termid":"MONDO:1011779"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neonatal hepatitis, dog","secondary_identifiers":["OMIA:001094-9615"],"termid":"MONDO:1012291","xrefs":{"Monarch":{"xref_id":"1012291"}}}


id: PBO:0049377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIIC subunit 1","termid":"PBO:0049377"}


id: GO:2000357
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of kidney smooth muscle cell differentiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of smooth muscle cell differentiation","termid":"GO:0051151"},{"relation_name":"is_a","term_name":"regulation of kidney smooth muscle cell differentiation","termid":"GO:2000356"},{"relation_name":"negatively_regulates","term_name":"kidney smooth muscle cell differentiation","termid":"GO:0072195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of kidney smooth muscle cell differentiation","termid":"GO:2000357"}


id: MONDO:0019034
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Accessory pancreas is an asymptomatic embryopathy characterized by the presence of pancreatic tissue in other sites of the body such as the splenic pedicle, gonadic pedicles, intestinal mesentery, duodenum wall, upper jejunum, or, more rarely, the gastric wall, ileum, gallbladder or spleen.","definition_xrefs":["Orphanet:674"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pancreas disorder","termid":"MONDO:0002356"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"accessory pancreas","secondary_identifiers":["UMLS:C0266268","MEDGEN:82737","SCTID:79037006","GARD:454","icd11.foundation:240534435","MESH:C536003"],"synonyms":[{"name":"pancreas accessorium","type":"related"}],"termid":"MONDO:0019034","xrefs":{"Monarch":{"xref_id":"0019034"}}}


id: GO:0071470
data:
  {"annotated_genes":["SJAG_03893","SJAG_04726","SJAG_00409","SJAG_00661","SJAG_02342","SJAG_00596","SJAG_02592","SJAG_04205","SJAG_04668","SJAG_01084","SJAG_02091","SJAG_03185","SJAG_02883"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[59336,93664,96139,97753,104591,106328,108312,116306,118124,118926],"is_not":false,"summary":null,"term":"GO:0071470"},{"annotations":[94174],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071474"},{"annotations":[91286],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071473"},{"annotations":[101963],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071472"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to osmotic stress","termid":"GO:0006970"},{"relation_name":"is_a","term_name":"cellular response to chemical stress","termid":"GO:0062197"},{"relation_name":"is_a","term_name":"cellular response to abiotic stimulus","termid":"GO:0071214"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00409":null,"SJAG_00596":null,"SJAG_00661":null,"SJAG_01084":null,"SJAG_02091":null,"SJAG_02342":null,"SJAG_02592":null,"SJAG_02883":null,"SJAG_03185":null,"SJAG_03893":null,"SJAG_04205":null,"SJAG_04668":null,"SJAG_04726":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to osmotic stress","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"cellular osmotic response","type":"exact"},{"name":"cellular osmotic stress response","type":"exact"}],"termid":"GO:0071470","terms_by_termid":{"GO:0071470":null,"GO:0071472":null,"GO:0071473":null,"GO:0071474":null}}


id: PBO:0001368
data:
  {"annotation_feature_type":"gene","cv_name":"DNA_binding_specificity","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complex binds 5'-CCAAT-3'","termid":"PBO:0001368"}


id: PBO:0117156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCT5 antisense RNA 1","termid":"PBO:0117156"}


id: SO:1000022
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transversion from T to G.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine_to_purine_transversion","termid":"SO:1000018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T_to_G_transversion","synonyms":[{"name":"T to G transversion","type":"exact"}],"termid":"SO:1000022"}


id: PBO:0077108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocase of inner mitochondrial membrane 13","termid":"PBO:0077108"}


id: PBO:0042634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain Y-linked 9 pseudogene","termid":"PBO:0042634"}


id: GO:0003393
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed, self-propelled movement of a neuron that contributes to the process of retrograde extension.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron migration","termid":"GO:0001764"},{"relation_name":"part_of","term_name":"retrograde extension","termid":"GO:0003389"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuron migration involved in retrograde extension","termid":"GO:0003393"}


id: GO:0050494
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of a C-terminal peptidyl-glycine ethanolamide-linked glycosylsphingolipidinositol (GSI) anchor following hydrolysis of a glycyl-peptide bond in the carboxy-terminal region of a membrane-associated protein.","definition_xrefs":["RESID:AA0165"],"gene_count":0,"genotype_count":0,"name":"obsolete GSI anchor biosynthetic process via N-glycyl-glycosylsphingolipidinositolethanolamine (obsolete GO:0050494)","synonyms":[{"name":"GSI anchor anabolism via N-glycyl-glycosylsphingolipidinositolethanolamine","type":"exact"},{"name":"GSI anchor formation via N-glycyl-glycosylsphingolipidinositolethanolamine","type":"exact"},{"name":"GSI anchor synthesis via N-glycyl-glycosylsphingolipidinositolethanolamine","type":"exact"}],"termid":"GO:0050494"}


id: GO:0072338
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving lactams, any cyclic amides of amino carboxylic acids, having a 1-azacycloalkan-2-one structure, or analogues having unsaturation or heteroatoms replacing one or more carbon atoms of the ring.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"},{"relation_name":"is_a","term_name":"small molecule metabolic process","termid":"GO:0044281"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"lactam metabolic process","synonyms":[{"name":"cellular lactam metabolic process","type":"exact"},{"name":"cellular lactam metabolism","type":"exact"}],"termid":"GO:0072338"}


id: GO:0047790
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: creatinine + H2O = N-methylhydantoin + NH3.","definition_xrefs":["MetaCyc:CREATININE-DEAMINASE-RXN","EC:3.5.4.21"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016810","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"creatinine deaminase activity","secondary_identifiers":["RHEA:12681"],"synonyms":[{"name":"creatinine desiminase activity","type":"related"},{"name":"creatinine hydrolase","type":"broad"},{"name":"creatinine iminohydrolase activity","type":"related"}],"termid":"GO:0047790"}


id: PBO:0052331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIAA1671 antisense RNA 1","termid":"PBO:0052331"}


id: GO:0048226
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Region of plant cell wall specialised to act as a seal to prevent back leakage of secreted material (analogous to tight junction between epithelial cells). Found particularly where root parenchymal cells secrete solutes into xylem vessels. The barrier is composed of suberin; a fatty substance, containing long chain fatty acids and fatty esters, also found in the cell walls of cork cells (phellem) in higher plants.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"secondary cell wall","termid":"GO:0009531"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005618"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005618","GO:0005575"],"is_obsolete":false,"name":"Casparian strip","secondary_identifiers":["Wikipedia:Casparian_strip"],"termid":"GO:0048226"}


id: GO:2000755
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of sphingomyelin catabolic process.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of amide metabolic process","termid":"GO:0034250"},{"relation_name":"is_a","term_name":"positive regulation of phospholipid catabolic process","termid":"GO:0060697"},{"relation_name":"is_a","term_name":"regulation of sphingomyelin catabolic process","termid":"GO:2000754"},{"relation_name":"positively_regulates","term_name":"sphingomyelin catabolic process","termid":"GO:0006685"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"positive regulation of sphingomyelin catabolic process","synonyms":[{"name":"positive regulation of sphingomyelin breakdown","type":"exact"},{"name":"positive regulation of sphingomyelin catabolism","type":"exact"},{"name":"positive regulation of sphingomyelin degradation","type":"exact"}],"termid":"GO:2000755"}


id: MONDO:0013390
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of limb-girdle muscular dystrophy characterized by proximal muscle weakness presenting in early childhood (with occasional falls and difficulties in climbing stairs) and a progressive course resulting in loss of ambulation in early adulthood. Muscle atrophy and multiple contractures have also been reported in rare cases.","definition_xrefs":["Orphanet:254361"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive limb-girdle muscular dystrophy","termid":"MONDO:0015152"},{"relation_name":"is_a","term_name":"qualitative or quantitative defects of plectin","termid":"MONDO:0016198"},{"relation_name":"is_a","term_name":"PLEC-related muscular dystrophy-epidermolysis bullosa simplex spectrum disorder","termid":"MONDO:1060109"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive limb-girdle muscular dystrophy type 2Q","secondary_identifiers":["GARD:12542","UMLS:C3150989","MEDGEN:462339","OMIM:613723","DOID:0110285"],"synonyms":[{"name":"LGMD2Q","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy due to plectin deficiency","type":"exact"},{"name":"limb-girdle muscular dystrophy type 2Q","type":"related"},{"name":"muscular dystrophy, limb-girdle, autosomal recessive 17","type":"exact"},{"name":"muscular dystrophy, limb-girdle, type 2Q","type":"exact"}],"termid":"MONDO:0013390","xrefs":{"Monarch":{"xref_id":"0013390"}}}


id: PBO:0056201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member A9B","termid":"PBO:0056201"}


id: MONDO:0008377
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any retinitis pigmentosa in which the cause of the disease is a mutation in the RP1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066","MONDO:0005328"],"is_obsolete":false,"name":"retinitis pigmentosa 1","secondary_identifiers":["GARD:9149","OMIM:180100","UMLS:C0220701","MEDGEN:67395","ICD10CM:H35.5","MESH:C538365","DOID:0110390"],"synonyms":[{"name":"RP","type":"related"},{"name":"RP1","type":"exact"},{"name":"RP1 retinitis pigmentosa","type":"exact"},{"name":"retinitis pigmentosa","type":"related"},{"name":"retinitis pigmentosa 1","type":"exact"},{"name":"retinitis pigmentosa caused by mutation in RP1","type":"exact"},{"name":"retinitis pigmentosa type 1","type":"exact"}],"termid":"MONDO:0008377","xrefs":{"Monarch":{"xref_id":"0008377"}}}


id: SO:0000794
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A rescue region that is engineered.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"engineered","termid":"SO:0000783"},{"relation_name":"is_a","term_name":"rescue_region","termid":"SO:0000411"},{"relation_name":"is_a","term_name":"engineered_region","termid":"SO:0000804"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"engineered_rescue_region","synonyms":[{"name":"engineered rescue fragment","type":"exact"},{"name":"engineered rescue region","type":"exact"},{"name":"engineered rescue segment","type":"exact"}],"termid":"SO:0000794"}


id: FYECO:0000215
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Any experimental condition where the pH of the medium or assay buffer is lower than the standard pombe growth medium of pH of ~5.6.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping experimental environment","termid":"FYECO:0000132"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"low pH","termid":"FYECO:0000215"}


id: PBO:0116604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lung cancer associated lncRNA targeting TOP2A","termid":"PBO:0116604"}


id: GO:0097614
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The part of a dinoflagellate cell below the cingulum; also referred to as the posterior portion of a dinoflagellate cell. It is separated from the epicone by the cingulum.","definition_xrefs":["Wikipedia:Dinoflagellate#Morphology","GOC:at"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"dinoflagellate hypocone","synonyms":[{"name":"hypocone","type":"broad"},{"name":"hyposome","type":"related"},{"name":"hypotheca","type":"related"}],"termid":"GO:0097614"}


id: GO:0046447
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving terpenoid indole alkaloids, compounds formed from the condensation of tryptamine (derived from tryptophan) and secologanin (derived from geranyl pyrophosphate).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"indole alkaloid metabolic process","termid":"GO:0035834"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"terpenoid indole alkaloid metabolic process","synonyms":[{"name":"terpenoid indole alkaloid metabolism","type":"exact"}],"termid":"GO:0046447"}


id: PBO:0073302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 14 pseudogene 24","termid":"PBO:0073302"}


id: PR:O94702
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An endoplasmic reticulum metallopeptidase 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04550","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum metallopeptidase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1259.02c","secondary_identifiers":["UniProtKB:O94702"],"synonyms":[{"name":"FXNA-like protease (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ERMP1","type":"exact"}],"termid":"PR:O94702"}


id: GO:0050388
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-galacturonate + H2O + NAD+ = galactarate + 2 H+ + NADH.","definition_xrefs":["EC:1.1.1.203","RHEA:22404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"uronate dehydrogenase activity","secondary_identifiers":["MetaCyc:URONATE-DEHYDROGENASE-RXN","KEGG_REACTION:R01981"],"synonyms":[{"name":"uronate: NAD-oxidoreductase activity","type":"related"},{"name":"uronate:NAD+ 1-oxidoreductase activity","type":"related"},{"name":"uronic acid dehydrogenase activity","type":"related"}],"termid":"GO:0050388"}


id: GO:0010938
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of tubulin heterodimers from one or both ends of a cytoplasmic microtubule.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule depolymerization","termid":"GO:0007019"},{"relation_name":"is_a","term_name":"cytoplasmic microtubule organization","termid":"GO:0031122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0000226","GO:0007010","GO:0008150"],"is_obsolete":false,"name":"cytoplasmic microtubule depolymerization","termid":"GO:0010938"}


id: GO:0042713
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expulsion of seminal fluid, thick white fluid containing spermatozoa, from the male genital tract.","definition_xrefs":["PMID:26385403","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"},{"relation_name":"part_of","term_name":"insemination","termid":"GO:0007320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sperm ejaculation","termid":"GO:0042713"}


id: PBO:0031688
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_peroxisomal_transport","termid":"PBO:0031688"}


id: SO:0000598
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000598 edited_by_C_insertion_and_dinucleotide_insertion (obsolete SO:0000598)","synonyms":[{"name":"transcript_edited_by_C-insertion_and_dinucleotide_insertion","type":"related"}],"termid":"SO:0000598"}


id: RO:HOM0000073
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Synology that results from allopolyploidy.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_ohnology_relationship_with","termid":"RO:HOM0000022"},{"relation_name":"is_a","term_name":"in_synology_relationship_with","termid":"RO:HOM0000053"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_homoeology_relationship_with","synonyms":[{"name":"homoeologous to","type":"exact"}],"termid":"RO:HOM0000073"}


id: GO:1902092
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of fumagillin biosynthetic process.","definition_xrefs":["PMID:23488861","GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of fumagillin biosynthetic process","termid":"GO:1902090"},{"relation_name":"positively_regulates","term_name":"fumagillin biosynthetic process","termid":"GO:1902086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"positive regulation of fumagillin biosynthetic process","synonyms":[{"name":"activation of fumagillin anabolism","type":"exact"},{"name":"activation of fumagillin biosynthesis","type":"exact"},{"name":"activation of fumagillin biosynthetic process","type":"narrow"},{"name":"activation of fumagillin formation","type":"exact"},{"name":"activation of fumagillin synthesis","type":"exact"},{"name":"positive regulation of fumagillin anabolism","type":"exact"},{"name":"positive regulation of fumagillin biosynthesis","type":"exact"},{"name":"positive regulation of fumagillin formation","type":"exact"},{"name":"positive regulation of fumagillin synthesis","type":"exact"},{"name":"up regulation of fumagillin anabolism","type":"exact"},{"name":"up regulation of fumagillin biosynthesis","type":"exact"},{"name":"up regulation of fumagillin biosynthetic process","type":"exact"},{"name":"up regulation of fumagillin formation","type":"exact"},{"name":"up regulation of fumagillin synthesis","type":"exact"},{"name":"up-regulation of fumagillin anabolism","type":"exact"},{"name":"up-regulation of fumagillin biosynthesis","type":"exact"},{"name":"up-regulation of fumagillin biosynthetic process","type":"exact"},{"name":"up-regulation of fumagillin formation","type":"exact"},{"name":"up-regulation of fumagillin synthesis","type":"exact"},{"name":"upregulation of fumagillin anabolism","type":"exact"},{"name":"upregulation of fumagillin biosynthesis","type":"exact"},{"name":"upregulation of fumagillin biosynthetic process","type":"exact"},{"name":"upregulation of fumagillin formation","type":"exact"},{"name":"upregulation of fumagillin synthesis","type":"exact"}],"termid":"GO:1902092"}


id: GO:0060862
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of floral organ abscission, the controlled shedding of floral organs.","definition_xrefs":["GOC:tb","GOC:dph","GOC:sdb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of floral organ abscission","termid":"GO:0060860"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"floral organ abscission","termid":"GO:0010227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of floral organ abscission","termid":"GO:0060862"}


id: PBO:0064081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoinositide interacting regulator of transient receptor potential channels","termid":"PBO:0064081"}


id: GO:0098501
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of removing one or more phosphate groups from a polynucleotide.","definition_xrefs":["GOC:DOS"],"gene_count":0,"genotype_count":0,"name":"obsolete polynucleotide dephosphorylation (obsolete GO:0098501)","termid":"GO:0098501"}


id: MONDO:0018862
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cat-scratch disease (obsolete MONDO:0018862)","termid":"MONDO:0018862","xrefs":{"Monarch":{"xref_id":"0018862"}}}


id: PBO:0072012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S7 pseudogene 14","termid":"PBO:0072012"}


id: PBO:0073626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIGLEC10 antisense RNA 2","termid":"PBO:0073626"}


id: PBO:0113197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meiosis-specific HORMAD protein required for chromosome synapsis; displays Red1p-dependent localization to unsynapsed axial-lateral elements of the synaptonemal complex; required for chiasma formation; binds chromatin to regulate initiation of meiotic recombination; promotes intra- and intermolecular synapsis between dsDNA molecules and folds DNA into rigid protein-DNA filaments in vitro; contains a HORMA domain, and a chromatin-binding region made up of PHD and winged helix-turn-helix domains","termid":"PBO:0113197"}


id: PBO:0076044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine kinase like domain containing 1","termid":"PBO:0076044"}


id: GO:0044402
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism within a multispecies community gains an advantage in growth or survival over another organism of a different species in that community.","definition_xrefs":["GOC:cc"],"gene_count":0,"genotype_count":0,"name":"obsolete competition with other organism (obsolete GO:0044402)","synonyms":[{"name":"competition with another organism","type":"exact"},{"name":"interspecies competition","type":"broad"}],"termid":"GO:0044402"}


id: MONDO:1010763
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Vitiligo that occurs in water buffalo.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitiligo, non-human animal","termid":"MONDO:1010136"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vitiligo, water buffalo","secondary_identifiers":["OMIA:001055-89462"],"termid":"MONDO:1010763","xrefs":{"Monarch":{"xref_id":"1010763"}}}


id: PBO:0041054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bromodomain containing 7 pseudogene 5","termid":"PBO:0041054"}


id: MONDO:0013017
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hypotrichosis that has material basis in a mutation on chromosome 1p21.1-q21.3.","definition_xrefs":["DOID:0110702","PMID:16185270"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"Marie Unna hereditary hypotrichosis","termid":"MONDO:0018631"},{"relation_name":"is_a","term_name":"Marie Unna hereditary hypotrichosis","termid":"MONDO:0018631"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypotrichosis 5","secondary_identifiers":["GARD:15585","MEDGEN:440568","OMIM:612841","MESH:C567554","UMLS:C2748535"],"synonyms":[{"name":"HYPT5","type":"exact"},{"name":"MUHH2","type":"exact"},{"name":"Marie Unna hereditary hypotrichosis 2","type":"exact"},{"name":"Muhh2","type":"exact"},{"name":"hypotrichosis 5","type":"exact"},{"name":"hypotrichosis type 5","type":"exact"},{"name":"hypt5","type":"exact"}],"termid":"MONDO:0013017","xrefs":{"Monarch":{"xref_id":"0013017"}}}


id: GO:1900572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of diorcinol.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"diorcinol metabolic process","termid":"GO:1900570"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"diorcinol biosynthetic process","synonyms":[{"name":"diorcinol anabolism","type":"exact"},{"name":"diorcinol biosynthesis","type":"exact"},{"name":"diorcinol formation","type":"exact"},{"name":"diorcinol synthesis","type":"exact"}],"termid":"GO:1900572"}


id: MONDO:0010124
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thumb, distal hyperextensibility of","secondary_identifiers":["MEDGEN:338552","UMLS:C1848817","OMIM:274200"],"synonyms":[{"name":"thumb, distal hyperextensibility of","type":"exact"}],"termid":"MONDO:0010124","xrefs":{"Monarch":{"xref_id":"0010124"}}}


id: PBO:0060478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NANOGNB pseudogene 3","termid":"PBO:0060478"}


id: GO:0004578
data:
  {"annotated_genes":["SJAG_02102"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[69563],"is_not":false,"summary":null,"term":"GO:0004578"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: an N,N'-diacetylchitobiosyl-diphospho-di-trans,poly-cis-dolichol + GDP-alpha-D-mannose = a beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-alpha-D-GlcNAc-diphospho-di-trans,poly-cis-dolichol + GDP + H+.","definition_xrefs":["RHEA:13865"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-1,4-mannosyltransferase activity","termid":"GO:0019187"},{"relation_name":"is_a","term_name":"GlcNAc(2)-PP-Dol mannosyltransferase activity","termid":"GO:0120562"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02102":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"chitobiosyldiphosphodolichol beta-mannosyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["Reactome:R-HSA-446218","MetaCyc:2.4.1.142-RXN","Reactome:R-HSA-4549382","EC:2.4.1.142"],"synonyms":[{"name":"GDP-mannose-dolichol diphosphochitobiose mannosyltransferase activity","type":"related"},{"name":"GDP-mannose:chitobiosyldiphosphodolichol beta-D-mannosyltransferase activity","type":"related"},{"name":"guanosine diphosphomannose-dolichol diphosphochitobiose mannosyltransferase activity","type":"related"}],"termid":"GO:0004578","terms_by_termid":{"GO:0004578":null}}


id: GO:0007386
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regionalization process in which embryonic segments are divided into compartments that will result in differences in cell differentiation.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anterior/posterior pattern specification","termid":"GO:0009952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"compartment pattern specification","synonyms":[{"name":"compartment specification","type":"related"}],"termid":"GO:0007386"}


id: GO:0030203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving glycosaminoglycans, any of a group of linear polysaccharides composed of repeating disaccharide units.","definition_xrefs":["PMID:38500384"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoglycan metabolic process","termid":"GO:0006022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glycosaminoglycan metabolic process","secondary_identifiers":["Reactome:R-HSA-1630316"],"synonyms":[{"name":"glycosaminoglycan metabolism","type":"exact"}],"termid":"GO:0030203"}


id: PBO:0002524
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.2.1.3","termid":"PBO:0002524"}


id: PBO:0038455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apoptosis associated transcript in bladder cancer","termid":"PBO:0038455"}


id: PBO:0049760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"host cell factor C2","termid":"PBO:0049760"}


id: GO:0006351
data:
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id: MONDO:0009188
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id: PBO:0066883
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id: GO:0070105
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id: PBO:0070869
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id: GO:1901305
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id: PR:Q9USK1
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id: MONDO:0013384
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id: FYECO:0000346
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id: PBO:0040198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argininosuccinate synthetase 1 pseudogene 11","termid":"PBO:0040198"}


id: GO:1904650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of fat cell apoptotic process.","definition_xrefs":["PMID:17024416","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of apoptotic process","termid":"GO:0043066"},{"relation_name":"is_a","term_name":"regulation of fat cell apoptotic process","termid":"GO:1904649"},{"relation_name":"negatively_regulates","term_name":"fat cell apoptotic process","termid":"GO:1904606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of fat cell apoptotic process","synonyms":[{"name":"down regulation of adipocyte apoptosis","type":"narrow"},{"name":"down regulation of adipocyte apoptotic process","type":"exact"},{"name":"down regulation of adipose cell apoptosis","type":"narrow"},{"name":"down regulation of adipose cell apoptotic process","type":"exact"},{"name":"down regulation of fat cell apoptosis","type":"narrow"},{"name":"down regulation of fat cell apoptotic process","type":"exact"},{"name":"down-regulation of adipocyte apoptosis","type":"narrow"},{"name":"down-regulation of adipocyte apoptotic process","type":"exact"},{"name":"down-regulation of adipose cell apoptosis","type":"narrow"},{"name":"down-regulation of adipose cell apoptotic process","type":"exact"},{"name":"down-regulation of fat cell apoptosis","type":"narrow"},{"name":"down-regulation of fat cell apoptotic process","type":"exact"},{"name":"downregulation of adipocyte apoptosis","type":"narrow"},{"name":"downregulation of adipocyte apoptotic process","type":"exact"},{"name":"downregulation of adipose cell apoptosis","type":"narrow"},{"name":"downregulation of adipose cell apoptotic process","type":"exact"},{"name":"downregulation of fat cell apoptosis","type":"narrow"},{"name":"downregulation of fat cell apoptotic process","type":"exact"},{"name":"inhibition of adipocyte apoptosis","type":"narrow"},{"name":"inhibition of adipocyte apoptotic process","type":"narrow"},{"name":"inhibition of adipose cell apoptosis","type":"narrow"},{"name":"inhibition of adipose cell apoptotic process","type":"narrow"},{"name":"inhibition of fat cell apoptosis","type":"narrow"},{"name":"inhibition of fat cell apoptotic process","type":"narrow"},{"name":"negative regulation of adipocyte apoptosis","type":"narrow"},{"name":"negative regulation of adipocyte apoptotic process","type":"exact"},{"name":"negative regulation of adipose cell apoptosis","type":"narrow"},{"name":"negative regulation of adipose cell apoptotic process","type":"exact"},{"name":"negative regulation of fat cell apoptosis","type":"narrow"}],"termid":"GO:1904650"}


id: GO:0002832
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of a response to biotic stimulus.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to biotic stimulus","termid":"GO:0002831"},{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"negatively_regulates","term_name":"response to biotic stimulus","termid":"GO:0009607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of response to biotic stimulus","synonyms":[{"name":"down regulation of response to biotic stimulus","type":"exact"},{"name":"down-regulation of response to biotic stimulus","type":"exact"},{"name":"downregulation of response to biotic stimulus","type":"exact"},{"name":"inhibition of response to biotic stimulus","type":"narrow"}],"termid":"GO:0002832"}


id: GO:0042608
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a T cell receptor, the antigen-recognizing receptor on the surface of T cells.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"},{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"T cell receptor binding","synonyms":[{"name":"T lymphocyte receptor binding","type":"exact"},{"name":"T-cell receptor binding","type":"exact"},{"name":"T-lymphocyte receptor binding","type":"exact"},{"name":"TCR binding","type":"exact"}],"termid":"GO:0042608"}


id: GO:0045542
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cholesterol.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cholesterol biosynthetic process","termid":"GO:0045540"},{"relation_name":"is_a","term_name":"positive regulation of cholesterol metabolic process","termid":"GO:0090205"},{"relation_name":"is_a","term_name":"positive regulation of sterol biosynthetic process","termid":"GO:0106120"},{"relation_name":"is_a","term_name":"positive regulation of alcohol biosynthetic process","termid":"GO:1902932"},{"relation_name":"positively_regulates","term_name":"cholesterol biosynthetic process","termid":"GO:0006695"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"positive regulation of cholesterol biosynthetic process","synonyms":[{"name":"activation of cholesterol biosynthetic process","type":"narrow"},{"name":"positive regulation of cholesterol anabolism","type":"exact"},{"name":"positive regulation of cholesterol biosynthesis","type":"exact"},{"name":"positive regulation of cholesterol formation","type":"exact"},{"name":"positive regulation of cholesterol synthesis","type":"exact"},{"name":"stimulation of cholesterol biosynthetic process","type":"narrow"},{"name":"up regulation of cholesterol biosynthetic process","type":"exact"},{"name":"up-regulation of cholesterol biosynthetic process","type":"exact"},{"name":"upregulation of cholesterol biosynthetic process","type":"exact"}],"termid":"GO:0045542"}


id: GO:0051237
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which RNA is maintained in a location and prevented from moving elsewhere.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of location","termid":"GO:0051235"},{"relation_name":"part_of","term_name":"RNA localization","termid":"GO:0006403"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"maintenance of RNA location","synonyms":[{"name":"RNA retention","type":"exact"},{"name":"maintenance of RNA localization","type":"related"}],"termid":"GO:0051237"}


id: MONDO:0003415
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hemoglobin d disease (obsolete MONDO:0003415)","termid":"MONDO:0003415","xrefs":{"Monarch":{"xref_id":"0003415"}}}


id: PBO:0087240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine kinase involved in cell cycle regulation and rDNA integrity; associated with late pre-40S particles via its conserved C-terminal domain; prevents premature use of pre-40S particles in translation; association with pre-40S particles regulated by its catalytic ATPase site and likely occurs after the release of Rio2p from these particles; involved in cell cycle progression and processing of the 20S pre-rRNA into mature 18S rRNA; phosphorylates Rpa43p in anaphase to remove Pol I from rDNA","termid":"PBO:0087240"}


id: GO:0045455
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ecdysteroids, a group of polyhydroxylated ketosteroids ubiquitous in insects and other arthropods, in which they initiate post-embryonic development, including the metamorphosis of immature forms and the development of the reproductive system and the maturation of oocytes in adult females.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid metabolic process","termid":"GO:0008202"},{"relation_name":"is_a","term_name":"ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"hormone metabolic process","termid":"GO:0042445"},{"relation_name":"part_of","term_name":"instar larval or pupal development","termid":"GO:0002165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"ecdysteroid metabolic process","synonyms":[{"name":"ecdysteroid metabolism","type":"exact"}],"termid":"GO:0045455"}


id: MONDO:0000472
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rheumatic heart disease (obsolete MONDO:0000472)","termid":"MONDO:0000472","xrefs":{"Monarch":{"xref_id":"0000472"}}}


id: MONDO:0031011
data:
  {"annotated_genes":["SJAG_01999"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87314],"is_not":false,"summary":null,"term":"MONDO:0031011"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01999":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with dysmorphic facies and variable seizures","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1784197","OMIM:619264","UMLS:C5543268","GARD:18543"],"synonyms":[{"name":"NEDDFAS","type":"exact"}],"termid":"MONDO:0031011","terms_by_termid":{"MONDO:0031011":null},"xrefs":{"Monarch":{"xref_id":"0031011"}}}


id: PBO:0018081
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae MCM10","termid":"PBO:0018081"}


id: GO:0010862
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the rate, frequency or extent of pathway-restricted SMAD protein phosphorylation. Pathway-restricted SMAD proteins and common-partner SMAD proteins are involved in the transforming growth factor beta receptor signaling pathways.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of pathway-restricted SMAD protein phosphorylation (obsolete GO:0010862)","termid":"GO:0010862"}


id: MONDO:0018888
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete congenital cornea plana (obsolete MONDO:0018888)","termid":"MONDO:0018888","xrefs":{"Monarch":{"xref_id":"0018888"}}}


id: GO:1990325
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A collagen homotrimer of alpha1(XXVII) chains. These trimers form thin, non-striated fibrils. Type XXVII collagen triple helices play a role during the calcification of cartilage and the transition of cartilage to bone.","definition_xrefs":["PMID:21421911","GOC:bhm","PMID:17876790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibrillar collagen trimer","termid":"GO:0005583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"collagen type XXVII trimer","termid":"GO:1990325"}


id: FYPO:0002147
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which all vegetative cells arising from a population of germinated spores are inviable. The population may be mixed with respect to other phenotypes (e.g. whether cell division occurs).","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable vegetative cell population after spore germination (obsolete FYPO:0002147)","synonyms":[{"name":"cell population inviable after spore germination","type":"exact"},{"name":"inviable germinated spore population","type":"exact"},{"name":"population of inviable germinated spores","type":"exact"}],"termid":"FYPO:0002147"}


id: MONDO:0020435
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"atrial septal defect","termid":"MONDO:0006664"},{"relation_name":"is_a","term_name":"syndromic congenital heart disease","termid":"MONDO:0100614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"atrial septal defect, coronary sinus type","secondary_identifiers":["Orphanet:99104","MEDGEN:488986","GARD:10697","icd11.foundation:664625334","UMLS:C2063331","ICD9:746.89","SCTID:40272001"],"synonyms":[{"name":"ASD coronary sinus","type":"related"},{"name":"ASD, coronary sinus type","type":"exact"},{"name":"atrial septal defect coronary sinus","type":"exact"},{"name":"coronary sinus atrial septal defects","type":"related"},{"name":"unroofed coronary sinus","type":"exact"}],"termid":"MONDO:0020435","xrefs":{"Monarch":{"xref_id":"0020435"}}}


id: PBO:0088030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquinol-cytochrome-c reductase; a Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex; transfers electrons from ubiquinol to cytochrome c1 during respiration; during import, Rip1p is first imported into the mitochondrial matrix where it is processed, acquires its Fe-S cluster, and is folded, then is translocated into the inner membrane by the action of a homo-oligomer of Bcs1p, and finally is delivered by Bcs1p to Complex III for assembly","termid":"PBO:0088030"}


id: PBO:0047674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fli-1 proto-oncogene, ETS transcription factor","termid":"PBO:0047674"}


id: PBO:0047318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAT atypical cadherin 2","termid":"PBO:0047318"}


id: PBO:0064929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 6 regulatory subunit 2 pseudogene 1","termid":"PBO:0064929"}


id: PBO:0116751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF related BAF chromatin remodeling complex subunit D1","termid":"PBO:0116751"}


id: PBO:0079421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta pseudogene 4","termid":"PBO:0079421"}


id: PBO:0046716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EVA1C pseudogene 2","termid":"PBO:0046716"}


id: MONDO:0002652
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenocarcinoma arising in the anal canal epithelium, including the mucosal surface, the anal glands, and the lining of fistulous tracts. The prognosis is related to the stage at diagnosis.","definition_xrefs":["NCIT:C5600"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rectum adenocarcinoma","termid":"MONDO:0002169"},{"relation_name":"is_a","term_name":"anal carcinoma","termid":"MONDO:0003199"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"anus adenocarcinoma","secondary_identifiers":["SCTID:423607006","MEDGEN:233976","UMLS:C1332257","DOID:3447"],"synonyms":[{"name":"adenocarcinoma of anus","type":"exact"},{"name":"adenocarcinoma of the anus","type":"exact"},{"name":"anal adenocarcinoma","type":"exact"},{"name":"anus adenocarcinoma","type":"exact"}],"termid":"MONDO:0002652","xrefs":{"Monarch":{"xref_id":"0002652"}}}


id: MONDO:0019675
data:
  {"annotated_genes":["SJAG_00851","SJAG_00183","SJAG_03864"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88485],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010075"},{"annotations":[87876],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032724"},{"annotations":[87413],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011335"}]},"cv_name":"mondo","definition":"A form of skeletal dysplasia characterized by severe dwarfism, generalized articular hypermobility, and progressive spinal malalignment.","definition_xrefs":["PMID:12784311"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"spondyloepiphyseal dysplasia","termid":"MONDO:0016761"},{"relation_name":"excluded_subClassOf","term_name":"obsolete disorder of O-xylosylglycan synthesis (obsolete MONDO:0017742)","termid":"MONDO:0017742"},{"relation_name":"excluded_subClassOf","term_name":"obsolete congenital disorder of glycosylation-related bone disorder (obsolete MONDO:0018292)","termid":"MONDO:0018292"},{"relation_name":"excluded_subClassOf","term_name":"obsolete congenital disorder of glycosylation with skin involvement (obsolete MONDO:0018293)","termid":"MONDO:0018293"},{"relation_name":"is_a","term_name":"spondyloepimetaphyseal dysplasia","termid":"MONDO:0100510"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00183":null,"SJAG_00851":null,"SJAG_03864":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"spondyloepimetaphyseal dysplasia with joint laxity","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0112197","MESH:C562968","UMLS:C0432243","ICD9:756.9","GARD:4982","MEDGEN:98148","OMIMPS:271640","SCTID:254100000","ICD9:719.80","Orphanet:93359"],"synonyms":[{"name":"SEMD-JL","type":"exact"},{"name":"SEMDJL","type":"exact"},{"name":"SEMDJL1","type":"narrow"},{"name":"spondyloepimetaphyseal dysplasia joint laxity","type":"related"},{"name":"spondyloepimetaphyseal dysplasia with joint laxity","type":"exact"},{"name":"spondyloepimetaphyseal dysplasia with joint laxity type 1","type":"narrow"},{"name":"spondyloepimetaphyseal dysplasia with joint laxity, Beighton type","type":"narrow"}],"termid":"MONDO:0019675","terms_by_termid":{"MONDO:0010075":null,"MONDO:0011335":null,"MONDO:0032724":null},"xrefs":{"Monarch":{"xref_id":"0019675"}}}


id: MOD:01696
data:
  {"annotated_genes":["SJAG_02522","SJAG_00733"],"annotation_feature_type":"gene","cv_annotations":{"PSI-MOD":[{"annotations":[82427,82366],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00050"}]},"cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with an acyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acylated residue","termid":"MOD:00670"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00733":null,"SJAG_02522":null},"genotype_count":0,"is_obsolete":false,"name":"alpha-amino acylated residue","references_by_uniquename":{"PMID:36408920":null},"termid":"MOD:01696","terms_by_termid":{"MOD:00050":null}}


id: GO:0006857
data:
  {"annotated_genes":["SJAG_03497","SJAG_02139","SJAG_05182","SJAG_05213","SJAG_01344","SJAG_01983","SJAG_02602","SJAG_03577","SJAG_00922","SJAG_01660"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73568],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140206"},{"annotations":[120212,120211],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035442"},{"annotations":[97306],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098709"},{"annotations":[114970],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0160007"},{"annotations":[98832,120060,97854],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071996"},{"annotations":[77308],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090374"},{"annotations":[120061,98833,97855],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036246"},{"annotations":[109803],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901583"},{"annotations":[104811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140207"}]},"cv_name":"biological_process","definition":"The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide transport","termid":"GO:0015833"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00922":null,"SJAG_01344":null,"SJAG_01660":null,"SJAG_01983":null,"SJAG_02139":null,"SJAG_02602":null,"SJAG_03497":null,"SJAG_03577":null,"SJAG_05182":null,"SJAG_05213":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"oligopeptide transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0006857","terms_by_termid":{"GO:0035442":null,"GO:0036246":null,"GO:0071996":null,"GO:0090374":null,"GO:0098709":null,"GO:0140206":null,"GO:0140207":null,"GO:0160007":null,"GO:1901583":null}}


id: PBO:0071145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L22 pseudogene 8","termid":"PBO:0071145"}


id: PBO:0028961
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_glycoprotein_glycan_structure","termid":"PBO:0028961"}


id: PBO:0073310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SERPINE1 mRNA binding protein 1 pseudogene 6","termid":"PBO:0073310"}


id: PR:Q10234
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mrp5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10234"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"37S ribosomal protein S5, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4G9.17c","synonyms":[{"name":"Spom972h-mrp5","type":"exact"}],"termid":"PR:Q10234"}


id: MONDO:0957263
data:
  {"annotated_genes":["SJAG_02194"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88306],"is_not":false,"summary":null,"term":"MONDO:0957263"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"pulmonary fibrosis and/or bone marrow failure, telomere-related","termid":"MONDO:0000148"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02194":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019303"}],"interesting_parent_ids":["MONDO:0019303"],"is_obsolete":false,"name":"pulmonary fibrosis and/or bone marrow failure syndrome, telomere-related, 8","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1841132","UMLS:C5830496","OMIM:620367"],"termid":"MONDO:0957263","terms_by_termid":{"MONDO:0957263":null},"xrefs":{"Monarch":{"xref_id":"0957263"}}}


id: PR:P78827
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ilv5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P78827"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ketol-acid reductoisomerase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC56F2.12","synonyms":[{"name":"Spom972h-ilv5","type":"exact"},{"name":"acetohydroxy-acid reductoisomerase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"alpha-keto-beta-hydroxylacyl reductoisomerase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P78827"}


id: PBO:0070511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L6 pseudogene 10","termid":"PBO:0070511"}


id: PBO:0066934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 236","termid":"PBO:0066934"}


id: GO:0070415
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving trehalose that occur as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.","definition_xrefs":["GOC:jp","GOC:mah","PMID:9797333"],"gene_count":0,"genotype_count":0,"name":"obsolete trehalose metabolism in response to cold stress (obsolete GO:0070415)","synonyms":[{"name":"trehalose metabolic process involved in response to cold stress","type":"exact"}],"termid":"GO:0070415"}


id: PBO:0042420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle 27 pseudogene 4","termid":"PBO:0042420"}


id: GO:0032097
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains, or increases the rate of a response to a food stimulus.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to food","termid":"GO:0032095"},{"relation_name":"is_a","term_name":"positive regulation of response to nutrient levels","termid":"GO:0032109"},{"relation_name":"positively_regulates","term_name":"response to food","termid":"GO:0032094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to food","synonyms":[{"name":"activation of response to food","type":"narrow"},{"name":"stimulation of response to food","type":"narrow"},{"name":"up regulation of response to food","type":"exact"},{"name":"up-regulation of response to food","type":"exact"},{"name":"upregulation of response to food","type":"exact"}],"termid":"GO:0032097"}


id: MONDO:0015655
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cerebral malformation with epilepsy (obsolete MONDO:0015655)","secondary_identifiers":["Orphanet:166478"],"termid":"MONDO:0015655","xrefs":{"Monarch":{"xref_id":"0015655"}}}


id: GO:1901171
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of naphthalene.","definition_xrefs":["GOC:yaf","UniPathway:UPA00082","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete naphthalene biosynthetic process (obsolete GO:1901171)","synonyms":[{"name":"naphthalene anabolism","type":"exact"},{"name":"naphthalene biosynthesis","type":"exact"},{"name":"naphthalene formation","type":"exact"},{"name":"naphthalene synthesis","type":"exact"}],"termid":"GO:1901171"}


id: PBO:0045413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPPA4 pseudogene 2","termid":"PBO:0045413"}


id: PBO:0001893
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ammecr1","termid":"PBO:0001893"}


id: PBO:0028695
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_transcription_termination","termid":"PBO:0028695"}


id: GO:0043450
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of an alkene, any acyclic branched or unbranched hydrocarbon having one carbon-carbon double bond and the general formula CnH2n.","definition_xrefs":["Wikipedia:Alkene","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkene metabolic process","termid":"GO:0043449"},{"relation_name":"is_a","term_name":"olefin biosynthetic process","termid":"GO:1900674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"alkene biosynthetic process","synonyms":[{"name":"alkene anabolism","type":"exact"},{"name":"alkene biosynthesis","type":"exact"},{"name":"alkene formation","type":"exact"},{"name":"alkene synthesis","type":"exact"}],"termid":"GO:0043450"}


id: PBO:0030364
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_during_cellular_response_to_oxygen","termid":"PBO:0030364"}


id: _global:overlaps
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"X overlaps Y iff there exists some Z such that Z contained_by X and Z contained_by Y.","definition_xrefs":["PMID:20226267"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mereotopologically_related_to","termid":"_global:mereotopologically_related_to"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"overlaps","secondary_identifiers":["RO:0002131"],"termid":"_global:overlaps"}


id: GO:0005037
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete death receptor adaptor protein activity (obsolete GO:0005037)","synonyms":[{"name":"death receptor adaptor protein activity","type":"exact"}],"termid":"GO:0005037"}


id: PBO:0082466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Calcium/H+ antiporter localized to the endoplasmic reticulum membrane; member of the calcium exchanger (CAX) family; potential Cdc28p substrate","termid":"PBO:0082466"}


id: MONDO:0003395
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare sex cord-stromal tumor that arises from the testis. It is characterized by the presence of granulosa-like cells and Call-Exner bodies. There are two variants described, the adult and the juvenile.","definition_xrefs":["NCIT:C6357"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"benign female reproductive system neoplasm","termid":"MONDO:0000624"},{"relation_name":"is_a","term_name":"testicular sex cord-stromal neoplasm","termid":"MONDO:0003125"},{"relation_name":"is_a","term_name":"granulosa cell tumor","termid":"MONDO:0006036"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testicular granulosa cell tumor","secondary_identifiers":["MEDGEN:237001","DOID:5331","UMLS:C1336709"],"synonyms":[{"name":"granulosa cell neoplasm of testis","type":"related"},{"name":"granulosa cell neoplasm of the testis","type":"related"},{"name":"granulosa cell tumor of testis","type":"exact"},{"name":"granulosa cell tumor of the testis","type":"related"},{"name":"granulosa cell tumour of testis","type":"exact"},{"name":"granulosa cell tumour of the testis","type":"related"},{"name":"testicular granulosa cell neoplasm","type":"related"},{"name":"testicular granulosa cell tumor","type":"exact"},{"name":"testis granulosa cell tumor","type":"exact"},{"name":"testis granulosa cell tumour","type":"exact"}],"termid":"MONDO:0003395","xrefs":{"Monarch":{"xref_id":"0003395"}}}


id: GO:0045915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving catecholamine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of amine metabolic process","termid":"GO:0033240"},{"relation_name":"is_a","term_name":"regulation of catecholamine metabolic process","termid":"GO:0042069"},{"relation_name":"positively_regulates","term_name":"catecholamine metabolic process","termid":"GO:0006584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of catecholamine metabolic process","synonyms":[{"name":"activation of catecholamine metabolic process","type":"narrow"},{"name":"positive regulation of catecholamine metabolism","type":"exact"},{"name":"stimulation of catecholamine metabolic process","type":"narrow"},{"name":"up regulation of catecholamine metabolic process","type":"exact"},{"name":"up-regulation of catecholamine metabolic process","type":"exact"},{"name":"upregulation of catecholamine metabolic process","type":"exact"}],"termid":"GO:0045915"}


id: GO:0034515
data:
  {"annotated_genes":["SJAG_04088","SJAG_02900","SJAG_03638"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[62866,74808,81543],"is_not":false,"summary":null,"term":"GO:0034515"}]},"cv_name":"cellular_component","definition":"An aggregation of proteasome core protease (CP) and regulatory particle (RP) complexes that localizes in the cytoplasm as dot-like structures when cells are in a quiescent state.","definition_xrefs":["PMID:30204036","PMID:18504300","GOC:krc","GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membraneless organelle","termid":"GO:0043232"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02900":null,"SJAG_03638":null,"SJAG_04088":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"proteasome storage granule","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000117":null},"synonyms":[{"name":"PSG","type":"related"}],"termid":"GO:0034515","terms_by_termid":{"GO:0034515":null}}


id: GO:0005216
data:
  {"annotated_genes":["SJAG_05229","SJAG_02564","SJAG_03114","SJAG_02598","SJAG_MIT37","SJAG_MIT09","SJAG_05342","SJAG_MIT15","SJAG_00915","SJAG_00048","SJAG_02532","SJAG_01168","SJAG_00133","SJAG_05204","SJAG_02322","SJAG_02019","SJAG_02105","SJAG_04471","SJAG_04122","SJAG_03925","SJAG_02877","SJAG_01090","SJAG_07003","SJAG_03895","SJAG_00438","SJAG_04668","SJAG_00542","SJAG_00836","SJAG_00985"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78949,116278,74100],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005262"},{"annotations":[81530,74718],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005227"},{"annotations":[72097],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005254"},{"annotations":[76134],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008331"},{"annotations":[105562],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140135"},{"annotations":[97465],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008381"},{"annotations":[120932,96626,103615,71566,79506,77502,109625,95055,58026,81016,74420,120938,71859,95646,120945,109717,79830],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046933"},{"annotations":[94121,115764,94179,101415],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015275"},{"annotations":[73368],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008308"}]},"cv_name":"molecular_function","definition":"Enables the facilitated diffusion of a monoatomic ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport","GOC:cy","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic ion transmembrane transporter activity","termid":"GO:0015075"},{"relation_name":"is_a","term_name":"channel activity","termid":"GO:0015267"}],"gene_count":29,"genes_by_uniquename":{"SJAG_00048":null,"SJAG_00133":null,"SJAG_00438":null,"SJAG_00542":null,"SJAG_00836":null,"SJAG_00915":null,"SJAG_00985":null,"SJAG_01090":null,"SJAG_01168":null,"SJAG_02019":null,"SJAG_02105":null,"SJAG_02322":null,"SJAG_02532":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_02877":null,"SJAG_03114":null,"SJAG_03895":null,"SJAG_03925":null,"SJAG_04122":null,"SJAG_04471":null,"SJAG_04668":null,"SJAG_05204":null,"SJAG_05229":null,"SJAG_05342":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"monoatomic ion channel activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"ion channel activity","type":"broad"}],"termid":"GO:0005216","terms_by_termid":{"GO:0005227":null,"GO:0005254":null,"GO:0005262":null,"GO:0008308":null,"GO:0008331":null,"GO:0008381":null,"GO:0015275":null,"GO:0046933":null,"GO:0140135":null}}


id: GO:0044659
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The dissemination of mature viral particles from a host cell by the rupture of cell membranes and the loss of cytoplasm.","definition_xrefs":["PMID:26728778","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated cytolysis of host cell","termid":"GO:0001897"},{"relation_name":"is_a","term_name":"viral release from host cell","termid":"GO:0019076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral release from host cell by cytolysis","secondary_identifiers":["GO:0019077","VZ:1077","GO:0046756"],"synonyms":[{"name":"cytolysis by virus of host cell","type":"related"},{"name":"lytic viral life cycle","type":"related"},{"name":"lytic viral release","type":"exact"},{"name":"viral exit from host cell by cytolysis","type":"exact"},{"name":"viral release by cell lysis","type":"exact"},{"name":"viral release by host cell lysis","type":"exact"}],"termid":"GO:0044659"}


id: PBO:0034668
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormally_monopolar_protein_localization_to_cell_tip","termid":"PBO:0034668"}


id: MONDO:0015871
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A usually unilateral, benign and well circumscribed biphasic neoplasm that arises from the breast. It usually affects middle-aged women. It is characterized by the presence of a double layer of epithelial cells that are arranged in clefts, surrounded by a cellular, monomorphic spindle cell mesenchymal component. Mitoses are rare. Necrotic changes may be present in large tumors.","definition_xrefs":["NCIT:C5196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast benign neoplasm","termid":"MONDO:0000620"},{"relation_name":"is_a","term_name":"breast phyllodes tumor","termid":"MONDO:0021047"},{"relation_name":"is_a","term_name":"benign phyllodes tumor","termid":"MONDO:0037002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign breast phyllodes tumor","secondary_identifiers":["ONCOTREE:BPT","icd11.foundation:827143668","UMLS:C1332533","MedDRA:10011813","MEDGEN:231438","Orphanet:180261","SCTID:720344007","DOID:1631"],"synonyms":[{"name":"BPT","type":"related"},{"name":"benign breast phyllodes tumor","type":"exact"},{"name":"benign cystosarcoma phyllodes","type":"related"},{"name":"benign phyllodes neoplasm","type":"broad"},{"name":"benign phyllodes neoplasm of breast","type":"exact"},{"name":"benign phyllodes neoplasm of the breast","type":"exact"},{"name":"benign phyllodes tumor of breast","type":"exact"},{"name":"benign phyllodes tumor of the breast","type":"exact"},{"name":"benign phyllodes tumour of breast","type":"exact"},{"name":"benign phyllodes tumour of the breast","type":"exact"},{"name":"breast benign phyllodes neoplasm","type":"exact"},{"name":"breast phyllodes tumor, benign","type":"exact"},{"name":"cystosarcoma phyllode","type":"related"},{"name":"cystosarcoma phyllode of the breast","type":"exact"},{"name":"cystosarcoma phyllodes","type":"related"},{"name":"cystosarcoma phyllodes NOS (morphologic abnormality)","type":"related"},{"name":"cystosarcoma phylloide","type":"related"},{"name":"cystosarcoma phylloide of the breast","type":"exact"},{"name":"phyllode tumor of the breast","type":"related"},{"name":"phyllode tumour of the breast","type":"related"},{"name":"phyllodes neoplasm","type":"broad"},{"name":"phyllodes tumor, benign (morphologic abnormality)","type":"broad"},{"name":"phylloide tumor of the breast","type":"exact"},{"name":"phylloide tumour of the breast","type":"exact"}],"termid":"MONDO:0015871","xrefs":{"Monarch":{"xref_id":"0015871"}}}


id: PBO:0058498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5692a-1","termid":"PBO:0058498"}


id: GO:0016031
data:
  {"annotated_genes":["SJAG_03358"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80845],"is_not":false,"summary":null,"term":"GO:0016031"}]},"cv_name":"biological_process","definition":"The process in which a tRNA is transported from the cytosol into the mitochondrial matrix.","definition_xrefs":["PMID:10988073","GOC:ma","PMID:11121736"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA import into mitochondrion","termid":"GO:0035927"},{"relation_name":"is_a","term_name":"tRNA transport","termid":"GO:0051031"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03358":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"tRNA import into mitochondrion","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"cytoplasmic tRNA import into mitochondria","type":"exact"},{"name":"cytoplasmic tRNA import into mitochondrion","type":"narrow"},{"name":"cytoplasmic tRNA transport into mitochondrion","type":"exact"},{"name":"cytoplasmic tRNA, mitochondrial import","type":"exact"},{"name":"mitochondrial import of cytoplasmic tRNA","type":"narrow"},{"name":"nuclear-encoded tRNA import into mitochondrion","type":"narrow"}],"termid":"GO:0016031","terms_by_termid":{"GO:0016031":null}}


id: PBO:0079035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Val (anticodon AAC) 4-1","termid":"PBO:0079035"}


id: MONDO:0043096
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital acardia","termid":"MONDO:0022357"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"holoacardius amorphus","secondary_identifiers":["SCTID:41049003","MEDGEN:75621","GARD:2720","UMLS:C0266719","Orphanet:2161"],"synonyms":[{"name":"Holoacardius amorphus","type":"exact"},{"name":"amorphous globosus","type":"related"},{"name":"amorphus globosus","type":"related"},{"name":"fetus anideus","type":"related"},{"name":"foetus anideus","type":"related"}],"termid":"MONDO:0043096","xrefs":{"Monarch":{"xref_id":"0043096"}}}


id: PBO:0039726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein B mRNA editing enzyme catalytic subunit 3H","termid":"PBO:0039726"}


id: GO:0004150
data:
  {"annotated_genes":["SJAG_00815"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70562],"is_not":false,"summary":null,"term":"GO:0004150"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-dihydropteridine = 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine + glycolaldehyde.","definition_xrefs":["EC:4.1.2.25"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00815":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"dihydroneopterin aldolase activity","references_by_uniquename":{"GO_REF:0000002":null},"secondary_identifiers":["RHEA:10540","MetaCyc:H2NEOPTERINALDOL-RXN"],"synonyms":[{"name":"2-amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-dihydropteridine glycolaldehyde-lyase (2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine-forming)","type":"related"},{"name":"2-amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-dihydropteridine glycolaldehyde-lyase activity","type":"related"}],"termid":"GO:0004150","terms_by_termid":{"GO:0004150":null}}


id: PBO:0027288
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_glutathione_transferase_activity_during_stationary_phase","termid":"PBO:0027288"}


id: GO:0102082
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4'-demethylrebeccamycin + S-adenosyl-L-methionine = H+ + rebeccamycin + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.164","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016741"],"is_obsolete":false,"name":"demethylrebeccamycin--D-glucose O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-10847","RHEA:27353"],"termid":"GO:0102082"}


id: PBO:0055197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2622","termid":"PBO:0055197"}


id: MONDO:0002341
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the arteries that is characterized by the presence of granulomas.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arteritis","termid":"MONDO:0043494"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"granulomatous angiitis","secondary_identifiers":["UMLS:C0018202","MESH:D020293","MEDGEN:9088","NCIT:C34653","DOID:2555"],"synonyms":[{"name":"Granulomatous arteritis","type":"exact"}],"termid":"MONDO:0002341","xrefs":{"Monarch":{"xref_id":"0002341"}}}


id: PBO:0002764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UbiE family methyltransferase (predicted)","termid":"PBO:0002764"}


id: GO:1905283
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of epidermal growth factor receptor signaling pathway involved in heart process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:23069713","GOC:BHF","GOC:BHF_miRNA","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of epidermal growth factor receptor signaling pathway","termid":"GO:0042059"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of epidermal growth factor receptor signaling pathway involved in heart process","termid":"GO:1905282"},{"relation_name":"negatively_regulates","term_name":"epidermal growth factor receptor signaling pathway involved in heart process","termid":"GO:1905251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of epidermal growth factor receptor signaling pathway involved in heart process","synonyms":[{"name":"down regulation of EGF receptor signaling pathway involved in cardiac process","type":"related"},{"name":"down regulation of EGF receptor signaling pathway involved in heart process","type":"exact"},{"name":"down regulation of EGF receptor signalling pathway involved in cardiac process","type":"related"},{"name":"down regulation of EGF receptor signalling pathway involved in heart process","type":"exact"},{"name":"down regulation of EGFR signaling pathway involved in cardiac process","type":"related"},{"name":"down regulation of EGFR signaling pathway involved in heart process","type":"exact"},{"name":"down regulation of ERBB1 signaling pathway involved in cardiac process","type":"related"},{"name":"down regulation of ERBB1 signaling pathway involved in heart process","type":"exact"},{"name":"down regulation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"down regulation of epidermal growth factor receptor signaling pathway involved in heart process","type":"exact"},{"name":"down regulation of epidermal growth factor receptor signalling pathway involved in cardiac process","type":"related"},{"name":"down regulation of epidermal growth factor receptor signalling pathway involved in heart process","type":"exact"},{"name":"down regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process","type":"related"},{"name":"down regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process","type":"exact"},{"name":"down-regulation of EGF receptor signaling pathway involved in cardiac process","type":"related"},{"name":"down-regulation of EGF receptor signaling pathway involved in heart process","type":"exact"},{"name":"down-regulation of EGF receptor signalling pathway involved in cardiac process","type":"related"},{"name":"down-regulation of EGF receptor signalling pathway involved in heart process","type":"exact"},{"name":"down-regulation of EGFR signaling pathway involved in cardiac process","type":"related"},{"name":"down-regulation of EGFR signaling pathway involved in heart process","type":"exact"},{"name":"down-regulation of ERBB1 signaling pathway involved in cardiac process","type":"related"},{"name":"down-regulation of ERBB1 signaling pathway involved in heart process","type":"exact"},{"name":"down-regulation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"down-regulation of epidermal growth factor receptor signaling pathway involved in heart process","type":"exact"},{"name":"down-regulation of epidermal growth factor receptor signalling pathway involved in cardiac process","type":"related"},{"name":"down-regulation of epidermal growth factor receptor signalling pathway involved in heart process","type":"exact"},{"name":"down-regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process","type":"related"},{"name":"down-regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process","type":"exact"},{"name":"downregulation of EGF receptor signaling pathway involved in cardiac process","type":"related"},{"name":"downregulation of EGF receptor signaling pathway involved in heart process","type":"exact"},{"name":"downregulation of EGF receptor signalling pathway involved in cardiac process","type":"related"},{"name":"downregulation of EGF receptor signalling pathway involved in heart process","type":"exact"},{"name":"downregulation of EGFR signaling pathway involved in cardiac process","type":"related"},{"name":"downregulation of EGFR signaling pathway involved in heart process","type":"exact"},{"name":"downregulation of ERBB1 signaling pathway involved in cardiac process","type":"related"},{"name":"downregulation of ERBB1 signaling pathway involved in heart process","type":"exact"},{"name":"downregulation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"downregulation of epidermal growth factor receptor signaling pathway involved in heart process","type":"exact"},{"name":"downregulation of epidermal growth factor receptor signalling pathway involved in cardiac process","type":"related"},{"name":"downregulation of epidermal growth factor receptor signalling pathway involved in heart process","type":"exact"},{"name":"downregulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process","type":"related"},{"name":"downregulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process","type":"exact"},{"name":"inhibition of EGF receptor signaling pathway involved in cardiac process","type":"related"},{"name":"inhibition of EGF receptor signaling pathway involved in heart process","type":"narrow"},{"name":"inhibition of EGF receptor signalling pathway involved in cardiac process","type":"related"},{"name":"inhibition of EGF receptor signalling pathway involved in heart process","type":"narrow"},{"name":"inhibition of EGFR signaling pathway involved in cardiac process","type":"related"},{"name":"inhibition of EGFR signaling pathway involved in heart process","type":"narrow"},{"name":"inhibition of ERBB1 signaling pathway involved in cardiac process","type":"related"},{"name":"inhibition of ERBB1 signaling pathway involved in heart process","type":"narrow"},{"name":"inhibition of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"inhibition of epidermal growth factor receptor signaling pathway involved in heart process","type":"narrow"},{"name":"inhibition of epidermal growth factor receptor signalling pathway involved in cardiac process","type":"related"},{"name":"inhibition of epidermal growth factor receptor signalling pathway involved in heart process","type":"narrow"},{"name":"inhibition of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process","type":"related"},{"name":"inhibition of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process","type":"narrow"},{"name":"negative regulation of EGF receptor signaling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of EGF receptor signaling pathway involved in heart process","type":"exact"},{"name":"negative regulation of EGF receptor signalling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of EGF receptor signalling pathway involved in heart process","type":"exact"},{"name":"negative regulation of EGFR signaling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of EGFR signaling pathway involved in heart process","type":"exact"},{"name":"negative regulation of ERBB1 signaling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of ERBB1 signaling pathway involved in heart process","type":"exact"},{"name":"negative regulation of epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of epidermal growth factor receptor signalling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of epidermal growth factor receptor signalling pathway involved in heart process","type":"exact"},{"name":"negative regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process","type":"related"},{"name":"negative regulation of receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process","type":"exact"}],"termid":"GO:1905283"}


id: GO:0021761
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the limbic system over time from its initial formation until its mature state. The limbic system is a collection of structures in the brain involved in emotion, motivation and emotional aspects of memory.","definition_xrefs":["ISBN:0878937420","GO_REF:0000021","GOC:cls","GOC:jid","GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"system development","termid":"GO:0048731"},{"relation_name":"part_of","term_name":"forebrain development","termid":"GO:0030900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"limbic system development","termid":"GO:0021761"}


id: PBO:0042395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD320 molecule","termid":"PBO:0042395"}


id: SOFP:keywords
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keywords","termid":"SOFP:keywords"}


id: GO:0009429
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the central rod of the bacterial-type flagellar basal body that is proximal to the cell membrane; the proximal rod connects the distal rod to the flagellar motor.","definition_xrefs":["PMID:11133968","GOC:mtg_sensu","PMID:10572114","PMID:12624192","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"bacterial-type flagellum basal body, rod","termid":"GO:0030694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"bacterial-type flagellum basal body, proximal rod","synonyms":[{"name":"flagellar basal body, proximal rod","type":"exact"},{"name":"flagellin-based flagellum basal body, proximal rod","type":"exact"}],"termid":"GO:0009429"}


id: GO:0002908
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of peripheral B cell deletion.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of peripheral tolerance induction","termid":"GO:0002658"},{"relation_name":"is_a","term_name":"regulation of B cell mediated immunity","termid":"GO:0002712"},{"relation_name":"is_a","term_name":"regulation of B cell deletion","termid":"GO:0002867"},{"relation_name":"regulates","term_name":"peripheral B cell deletion","termid":"GO:0002454"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of peripheral B cell deletion","termid":"GO:0002908"}


id: GO:0061669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Neurotransmitter secretion that occurs in the absence of the action of a secretagogue or a presynaptic action potential.","definition_xrefs":["GOC:dph","GOC:pad","GOC:PARL","PMID:21334193"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurotransmitter secretion","termid":"GO:0007269"},{"relation_name":"part_of","term_name":"spontaneous synaptic transmission","termid":"GO:0098814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0023052","GO:0051179"],"is_obsolete":false,"name":"spontaneous neurotransmitter secretion","synonyms":[{"name":"stimulus-independent neurotransmitter secretion","type":"exact"}],"termid":"GO:0061669"}


id: MONDO:0021172
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Atypical form of Timothy syndrome, causes a more severe form of long QT syndrome and a greater risk of arrhythmia and sudden death.","direct_ancestors":[{"relation_name":"is_a","term_name":"Timothy syndrome","termid":"MONDO:0010979"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005267"],"is_obsolete":false,"name":"Timothy syndrome, atypical type","secondary_identifiers":["GARD:22382","ICD10CM:I49.8","MEDGEN:1805271","Orphanet:595109","UMLS:C5575746","SCTID:719907006"],"synonyms":[{"name":"ATS","type":"exact"},{"name":"Atypical LQT8","type":"exact"},{"name":"Timothy syndrome type 2 (disorder)","type":"exact"},{"name":"atypical Timothy syndrome","type":"exact"}],"termid":"MONDO:0021172","xrefs":{"Monarch":{"xref_id":"0021172"}}}


id: PBO:0081080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger DHHC-type containing 11B","termid":"PBO:0081080"}


id: MONDO:0000598
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A language disorder that involves an acquired impairment of any language modality such as producing or comprehending spoken or written language.","definition_xrefs":["DOID:0060046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"language disorder","termid":"MONDO:0004750"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aphasia","secondary_identifiers":["MESH:D001037","icd11.foundation:1167055901","MEDGEN:8159","UMLS:C0003537","ICD10CM:R47.01"],"termid":"MONDO:0000598","xrefs":{"Monarch":{"xref_id":"0000598"}}}


id: FYPO:0000513
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which karyogamy involved in conjugation with cellular fusion begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear fusion during mating","termid":"FYPO:0000510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of nuclear fusion during mating","synonyms":[{"name":"delayed nuclear fusion during mating","type":"exact"},{"name":"delayed onset of karyogamy","type":"exact"},{"name":"delayed onset of karyogamy involved in conjugation with cellular fusion","type":"exact"},{"name":"nuclear fusion during mating: delayed","type":"related"}],"termid":"FYPO:0000513"}


id: PBO:0060841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurofilament light chain","termid":"PBO:0060841"}


id: PBO:0063948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 inhibitor and LY6/PLAUR domain containing","termid":"PBO:0063948"}


id: PBO:0002891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DASH complex subunit Dad3","termid":"PBO:0002891"}


id: PBO:0068850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 88, pseudogene","termid":"PBO:0068850"}


id: PBO:0080785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XK related, Y-linked pseudogene 5","termid":"PBO:0080785"}


id: MOD:00983
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:67"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Asp transamidation with piperidine","termid":"MOD:00983"}


id: GO:0160073
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a Casparian strip, a region of plant cell wall specialised to act as a seal to prevent back leakage of secreted material.","definition_xrefs":["PMID:28104889"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"part_of","term_name":"plant-type cell wall assembly","termid":"GO:0071668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0071554"],"is_obsolete":false,"name":"Casparian strip assembly","synonyms":[{"name":"Casparian strip formation","type":"exact"}],"termid":"GO:0160073"}


id: PBO:0042137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine ligand 1","termid":"PBO:0042137"}


id: PBO:0031413
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-T-shaped_vegetative_cell","termid":"PBO:0031413"}


id: PBO:0082278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Anthranilate synthase; catalyzes the initial step of tryptophan biosynthesis, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp3p","termid":"PBO:0082278"}


id: PBO:0116191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-oxoprolinase (ATP-hydrolizing), Oxp1","termid":"PBO:0116191"}


id: SO:0001390
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A post translationally modified cysteine amino acid feature.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_amino_acid_feature","termid":"SO:0001385"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified_L_cysteine","secondary_identifiers":["MOD:00905"],"synonyms":[{"name":"ModCys","type":"exact"},{"name":"modified L cysteine","type":"exact"},{"name":"modified L-cysteine","type":"exact"}],"termid":"SO:0001390"}


id: MONDO:1010760
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pityriasis rosea that occurs in pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pityriasis rosea, non-human animal","termid":"MONDO:1010134"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pityriasis rosea, pig","secondary_identifiers":["OMIA:000801-9823"],"termid":"MONDO:1010760","xrefs":{"Monarch":{"xref_id":"1010760"}}}


id: MONDO:0010092
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Filippi syndrome is characterized by microcephaly, cutaneous syndactyly of the fingers and toes, intellectual deficit, growth retardation and a characteristic facies (high and broad nasal bridge, thin alae nasi, micrognathia and a high frontal hairline). So far, less than 25 cases have been reported. Cryptorchidism, polydactyly, and teeth and hair anomalies may also be present. Transmission is autosomal recessive.","definition_xrefs":["Orphanet:3255"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"polydactyly-syndactyly-triphalangism","termid":"MONDO:0800066"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Filippi syndrome","secondary_identifiers":["MESH:C538152","GARD:62","icd11.foundation:1989471300","MEDGEN:163197","DOID:0112194","SCTID:720954000","OMIM:272440","NORD:1149","UMLS:C0795940"],"synonyms":[{"name":"FILIPPI syndrome","type":"related"},{"name":"FLPIS","type":"related"},{"name":"Filippi syndrome","type":"exact"},{"name":"Scott craniodigital syndrome with intellectual disability","type":"related"},{"name":"Scott craniodigital syndrome with mental retardation","type":"related"},{"name":"syndactyly type I with microcephaly and intellectual disability","type":"related"},{"name":"syndactyly type I with microcephaly and mental retardation","type":"related"},{"name":"syndactyly, type I, with microcephaly and intellectual disability","type":"related"},{"name":"syndactyly, type I, with microcephaly and mental retardation","type":"related"},{"name":"type 1 syndactyly-microcephaly-intellectual disability syndrome","type":"exact"},{"name":"unusual facial appearance, microcephaly, growth and intellectual disability and syndactyly","type":"related"},{"name":"unusual facial appearance, microcephaly, growth and mental retardation and syndactyly","type":"related"}],"termid":"MONDO:0010092","xrefs":{"Monarch":{"xref_id":"0010092"}}}


id: PBO:0090530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F1-FO ATP synthase subunit E","termid":"PBO:0090530"}


id: GO:0022031
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of an astrocyte cell through the telencephalon.","definition_xrefs":["GOC:jid","GO_REF:0000021","GOC:cls","GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telencephalon glial cell migration","termid":"GO:0022030"},{"relation_name":"is_a","term_name":"astrocyte cell migration","termid":"GO:0043615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"telencephalon astrocyte cell migration","termid":"GO:0022031"}


id: GO:0034407
data:
  {"annotated_genes":["SJAG_05285","SJAG_01835","SJAG_00218","SJAG_04668","SJAG_01255","SJAG_01290","SJAG_04483","SJAG_02222","SJAG_01787","SJAG_01288","SJAG_03705","SJAG_04666","SJAG_04771","SJAG_04659","SJAG_04462","SJAG_00610","SJAG_03587","SJAG_00876"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96240],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034413"},{"annotations":[74684,107912,115001,77546,93372,117660,72740,76200],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071970"},{"annotations":[94193,89279],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0140748"},{"annotations":[107721,119757,92540,119890,107148,94177,69342],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090334"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds, found in the walls of cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(1->3)-beta-D-glucan metabolic process","termid":"GO:0006074"},{"relation_name":"is_a","term_name":"cell wall beta-glucan metabolic process","termid":"GO:0034406"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00218":null,"SJAG_00610":null,"SJAG_00876":null,"SJAG_01255":null,"SJAG_01288":null,"SJAG_01290":null,"SJAG_01787":null,"SJAG_01835":null,"SJAG_02222":null,"SJAG_03587":null,"SJAG_03705":null,"SJAG_04462":null,"SJAG_04483":null,"SJAG_04659":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0071554"],"is_obsolete":false,"name":"cell wall (1->3)-beta-D-glucan metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"cell wall 1,3-beta-D-glucan metabolic process","type":"exact"},{"name":"cell wall 1,3-beta-glucan metabolic process","type":"broad"},{"name":"cell wall 1,3-beta-glucan metabolism","type":"exact"},{"name":"cell wall beta-1,3 glucan metabolic process","type":"exact"},{"name":"cell wall beta-1,3 glucan metabolism","type":"exact"}],"termid":"GO:0034407","terms_by_termid":{"GO:0034413":null,"GO:0071970":null,"GO:0090334":null,"GO:0140748":null}}


id: PBO:0047626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"filamin A interacting protein 1 like","termid":"PBO:0047626"}


id: PATO:0001690
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A contractility quality inhering in a bearer by virtue of the bearer's ability of contracting or being contracted.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"contractility","termid":"PATO:0001579"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contractile","termid":"PATO:0001690"}


id: MONDO:0007815
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete immunodeficiency with defective leukocyte and lymphocyte function and with response to histamine-1 antagonist (obsolete MONDO:0007815)","termid":"MONDO:0007815","xrefs":{"Monarch":{"xref_id":"0007815"}}}


id: FYPO:0001757
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein phosphatase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein phosphatase activity","termid":"FYPO:0001756"},{"relation_name":"is_a","term_name":"decreased phosphatase activity","termid":"FYPO:0004304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0001985","FYPO:0000707","FYPO:0000652","FYPO:0000654"],"is_obsolete":false,"name":"decreased protein phosphatase activity","synonyms":[{"name":"decreased phosphoprotein phosphatase activity","type":"exact"},{"name":"reduced protein phosphatase activity","type":"exact"}],"termid":"FYPO:0001757"}


id: PBO:0086461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative metalloprotease of the mitochondrial inner membrane; required for processing of Atp6p; has an additional role in assembly of the F0 sector of the F1F0 ATP synthase complex; substrate of the Mia40p-Erv1p disulfide relay system, and folding is assisted by Mia40p","termid":"PBO:0086461"}


id: PBO:0070759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10 pseudogene 15","termid":"PBO:0070759"}


id: PBO:0001076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase (predicted)","termid":"PBO:0001076"}


id: PBO:0018129
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methemoglobinemia","termid":"PBO:0018129"}


id: PBO:0075472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatogenesis associated 22","termid":"PBO:0075472"}


id: MONDO:0015922
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete channelopathy with epilepsy (obsolete MONDO:0015922)","secondary_identifiers":["Orphanet:182083"],"termid":"MONDO:0015922","xrefs":{"Monarch":{"xref_id":"0015922"}}}


id: GO:0018192
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of an enzyme active site via modification of peptidyl-cysteine to peptidyl-L-cysteine persulfide.","definition_xrefs":["RESID:AA0269"],"gene_count":0,"genotype_count":0,"name":"obsolete enzyme active site formation via cysteine modification to L-cysteine persulfide (obsolete GO:0018192)","synonyms":[{"name":"enzyme active site formation via L-cysteine persulphide","type":"exact"}],"termid":"GO:0018192"}


id: MONDO:0011969
data:
  {"annotated_genes":["SJAG_01950"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86796],"is_not":false,"summary":null,"term":"MONDO:0011969"}]},"cv_name":"mondo","definition":"A form of congenital disorders of N-linked glycosylation that is characterized by gastrointestinal symptoms (diarrhea, vomiting, feeding problems with failure to thrive, protein-losing enteropathy), edema and ascites (including hydrops fetalis), hepatomegaly, renal tubulopathy, coagulation anomalies due to thrombocytopenia, brain involvement (psychomotor delay, seizures, ataxia), facial dysmorphism (low-set ears and retrognathia), pes equinovarus, and muscular hypotonia. Cataracts may also be observed. Prognosis is usually poor. The disease is caused by loss-of-function mutations in the gene ALG8 (11q14.1), resulting in a block in the initial step of protein glycosylation.","definition_xrefs":["Orphanet:79325"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type I","termid":"MONDO:0005500"},{"relation_name":"is_a","term_name":"disorder of protein N-glycosylation","termid":"MONDO:0017740"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01950":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"ALG8-congenital disorder of glycosylation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C535746","GARD:9834","MEDGEN:419692","SCTID:720977000","UMLS:C2931002","OMIM:608104","DOID:0080560"],"synonyms":[{"name":"ALG8-CDG","type":"exact"},{"name":"ALG8-CDG (CDG-Ih)","type":"related"},{"name":"ALG8-congenital disorder of glycosylation","type":"exact"},{"name":"CDG 1H","type":"related"},{"name":"CDG Ih","type":"related"},{"name":"CDG syndrome type Ih","type":"exact"},{"name":"CDG-Ih","type":"exact"},{"name":"CDG1H","type":"exact"},{"name":"carbohydrate deficient glycoprotein syndrome type Ih","type":"exact"},{"name":"congenital disorder of glycosylation type 1h","type":"exact"},{"name":"congenital disorder of glycosylation type Ih","type":"exact"},{"name":"congenital disorder of glycosylation, type Ih","type":"related"},{"name":"glucosyltransferase 2 deficiency","type":"exact"}],"termid":"MONDO:0011969","terms_by_termid":{"MONDO:0011969":null},"xrefs":{"Monarch":{"xref_id":"0011969"}}}


id: FYPO:0007338
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 4 of histone H3 in centromeric regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K4 methylation at centromere during vegetative growth","termid":"FYPO:0007337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002274","FYPO:0002494","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased histone H3-K4 trimethylation at centromere during vegetative growth","synonyms":[{"name":"increased centromeric histone H3-K4 trimethylation during vegetative growth","type":"exact"},{"name":"increased histone H3 K4 trimethylation at centromere","type":"exact"},{"name":"increased histone H3-K4 trimethylation at centromere during mitotic cell cycle during vegetative growth","type":"related"},{"name":"increased histone H3-K4 trimethylation at centromeric region","type":"exact"},{"name":"increased histone H3K4 trimethylation at centromere","type":"exact"},{"name":"increased histone H3K4me3 at centromere","type":"exact"},{"name":"increased histone lysine H3 K4 trimethylation at centromere","type":"exact"}],"termid":"FYPO:0007338"}


id: PBO:0030308
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-misoriented_septum_during_vegetative_growth","termid":"PBO:0030308"}


id: MONDO:0007486
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare genetic disorder with an autosomal dominant pattern of inheritance with variable penetrance. It was initially described among Native Americans belonging to the Haliwa-Saponi tribe of northeastern North Carolina. It is caused by a duplication of chromosomal DNA at 4q35. Clinical signs present in early childhood and include asymptomatic plaques of the epibulbar conjunctivae and oral mucosa. Clinical progression of the plaques to malignancy has not been reported.","definition_xrefs":["NCIT:C3940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"superficial corneal dystrophy","termid":"MONDO:0020212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"hereditary benign intraepithelial dyskeratosis","secondary_identifiers":["GARD:17524","MESH:C562551","SCTID:400014002","MEDGEN:75588","OMIM:127600","UMLS:C0265966","icd11.foundation:2059594980","Orphanet:352657"],"synonyms":[{"name":"Dkbi","type":"related"},{"name":"HBID","type":"exact"},{"name":"Witkop-Von Sallmann disease","type":"exact"},{"name":"dyskeratosis, hereditary benign intraepithelial","type":"related"},{"name":"hereditary benign corneal intraepithelial dyskeratosis","type":"exact"}],"termid":"MONDO:0007486","xrefs":{"Monarch":{"xref_id":"0007486"}}}


id: PBO:0052469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF transcription factor 15","termid":"PBO:0052469"}


id: FYECO:0000403
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in medium containing glucose (typically <2% w/v), salts, water and with L-glutamine as the nitrogen source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose MM, glutamine nitrogen source","synonyms":[{"name":"EMMG","type":"related"},{"name":"glucose minimal medium, glutamine nitrogen source","type":"exact"},{"name":"standard glucose minimal medium, glutamine nitrogen source","type":"related"}],"termid":"FYECO:0000403"}


id: GO:0052920
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (2R)-2-hydroxy-2-methylbutanenitrile = butan-2-one + hydrogen cyanide.","definition_xrefs":["EC:4.1.2.46"],"gene_count":0,"genotype_count":0,"name":"obsolete (2R)-2-hydroxy-2-methylbutanenitrile lyase activity (obsolete GO:0052920)","termid":"GO:0052920"}


id: FYPO:0001425
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of the initiation of mitotic DNA replication is abnormal, resulting in one or more rounds of rereplication of the entire genome.","definition_xrefs":["PMID:10388806","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"DNA content increased during vegetative growth","termid":"FYPO:0000158"},{"relation_name":"is_a","term_name":"abnormal negative regulation of mitotic DNA replication initiation","termid":"FYPO:0000216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal negative regulation of mitotic DNA replication initiation resulting in complete rereplication","synonyms":[{"name":"abnormal negative regulation of DNA replication initiation during vegetative growth, resulting in complete rereplication","type":"exact"},{"name":"abnormal negative regulation of DNA replication initiation resulting in complete rereplication during mitotic cell cycle","type":"related"},{"name":"abnormal negative regulation of mitotic DNA replication initiation resulting in complete re-replication","type":"exact"},{"name":"complete mitotic DNA re-replication","type":"related"},{"name":"complete mitotic DNA rereplication","type":"related"},{"name":"endoreduplication","type":"related"},{"name":"endoreplication","type":"related"},{"name":"increased spontaneous diploidization","type":"related"}],"termid":"FYPO:0001425"}


id: FYPO:0005045
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of mitotic spindle elongation is decreased, and sister chromatids do not move towards the spindle poles at the same time during mitosis prior to completion of chromosome segregation.","definition_xrefs":["PomBase:mah","PMID:20935472"],"direct_ancestors":[{"relation_name":"has_part","term_name":"lagging mitotic chromosomes","termid":"FYPO:0000228"},{"relation_name":"has_part","term_name":"decreased rate of mitotic spindle elongation","termid":"FYPO:0003268"},{"relation_name":"is_a","term_name":"decreased rate of mitotic spindle elongation","termid":"FYPO:0003268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0000641"},{"rel_name":"has_part","termid":"FYPO:0000054"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0000054","FYPO:0000337","FYPO:0000641","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal mitotic sister chromatid segregation with lagging chromosomes and decreased rate of mitotic spindle elongation","synonyms":[{"name":"abnormal mitotic sister chromatid segregation with lagging chromosomes and decreased rate of mitotic spindle elongation during vegetative growth","type":"exact"},{"name":"abnormal sister chromatid segregation with lagging chromosomes and decreased rate of spindle elongation during mitotic cell cycle","type":"related"},{"name":"lagging mitotic chromosomes with decreased rate of mitotic spindle elongation","type":"exact"},{"name":"lagging mitotic chromosomes with decreased spindle elongation rate","type":"exact"},{"name":"lagging mitotic sister chromatids, with decreased rate of mitotic spindle elongation","type":"exact"}],"termid":"FYPO:0005045"}


id: PBO:0089687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteasome complex subunit alpha 1","termid":"PBO:0089687"}


id: PBO:0114492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER-resident glycoprotein involved in high-pressure tolerance; proposed role promoting proper folding of nutrient permeases, such as Tat2p, in the ER during hydrostatic pressure stress and maintaining permease conformational stability; contains two transmembrane domains, a C-terminal cytoplasmic domain and a luminal region with 12 N-linked glycans; null is synthetically sick with cdc13-1; localizes to the ER membrane","termid":"PBO:0114492"}


id: PBO:0078169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta diversity 2","termid":"PBO:0078169"}


id: GO:0042902
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of linking a protein to peptidoglycan via a carboxy terminal threonine carboxyl group through a pentaglycyl peptide to the lysine or diaminopimelic acid of the peptidoglycan.","definition_xrefs":["RESID:AA0345"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidoglycan-protein cross-linking via L-threonyl-pentaglycyl-murein (obsolete GO:0042902)","termid":"GO:0042902"}


id: MONDO:0017581
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete familial infantile gigantism (obsolete MONDO:0017581)","secondary_identifiers":["Orphanet:300373"],"synonyms":[{"name":"X-LAG (X-linked acrogigantism)","type":"exact"},{"name":"hereditary infantile gigantism","type":"exact"},{"name":"hereditary pituitary hyperplasia","type":"exact"},{"name":"infantile gigantism due to pituitary hyperplasia","type":"exact"}],"termid":"MONDO:0017581","xrefs":{"Monarch":{"xref_id":"0017581"}}}


id: GO:0007127
data:
  {"annotated_genes":["SJAG_01138","SJAG_04271","SJAG_03751","SJAG_05266","SJAG_03525","SJAG_00140","SJAG_03683","SJAG_01662","SJAG_00918","SJAG_02814","SJAG_01410","SJAG_05185","SJAG_01419","SJAG_00727","SJAG_01370","SJAG_02339","SJAG_03219","SJAG_02295","SJAG_01677","SJAG_02731","SJAG_03092","SJAG_00600","SJAG_03220","SJAG_02737","SJAG_02556","SJAG_07002","SJAG_03681","SJAG_04748","SJAG_05226","SJAG_01067","SJAG_00418","SJAG_05319","SJAG_01873","SJAG_02181","SJAG_03048","SJAG_05019","SJAG_01076","SJAG_03698","SJAG_01775","SJAG_03437","SJAG_00397","SJAG_05373","SJAG_04076","SJAG_04001","SJAG_01538","SJAG_03217","SJAG_01708","SJAG_02465","SJAG_01211","SJAG_01863","SJAG_00980","SJAG_03989","SJAG_05333","SJAG_03680","SJAG_03221","SJAG_04950","SJAG_04126","SJAG_00794","SJAG_02045","SJAG_00377","SJAG_03720","SJAG_04457","SJAG_02104","SJAG_00623","SJAG_01224","SJAG_04259","SJAG_01371","SJAG_05220","SJAG_03942","SJAG_02460","SJAG_03073","SJAG_01263","SJAG_01156","SJAG_03327","SJAG_03567","SJAG_02294","SJAG_02708","SJAG_01777","SJAG_03673","SJAG_05196","SJAG_05323","SJAG_01082","SJAG_02267","SJAG_00757","SJAG_02346","SJAG_04303","SJAG_01278","SJAG_00756","SJAG_02652","SJAG_00100","SJAG_03287","SJAG_02286","SJAG_01837","SJAG_04143","SJAG_01330","SJAG_00172","SJAG_02561","SJAG_02311","SJAG_04623","SJAG_00229","SJAG_02606","SJAG_01601","SJAG_05295","SJAG_00368","SJAG_00908","SJAG_01044","SJAG_02822","SJAG_03685","SJAG_00113","SJAG_03926","SJAG_01805","SJAG_05260","SJAG_02616","SJAG_00935","SJAG_02490"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109530,119091],"is_not":false,"summary":null,"term":"GO:0007127"},{"annotations":[100838,109473,118642,90310,90934],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990918"},{"annotations":[92763,112883,89524,104764,115785,93620,118791,105055,96990,113234,93156,99360,102516],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030989"},{"annotations":[95569,118909,117380,92056,100402,115623,109634,103130,89579],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031619"},{"annotations":[109635,113056,89525,80524,112379],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0007129"},{"annotations":[118710,61461,62285,91133],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045143"},{"annotations":[103230,113057,108401],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032118"},{"annotations":[118910,91367],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030999"},{"annotations":[108125,116337],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1905318"},{"annotations":[65476,91537],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070197"},{"annotations":[89162,104617,106910,101712,91538],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032121"},{"annotations":[95573,103064,103591,116338,106297,117742,109636,115624,115064,100905],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990813"},{"annotations":[110565,106683,92108,111469,112958],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010780"},{"annotations":[112127,109475],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010772"},{"annotations":[80519,64137,98698,103318,118951,109476,90251,112128],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000709"},{"annotations":[95656,112006],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051755"},{"annotations":[102338,90252,80522],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010774"},{"annotations":[119545,119407,98498,117784],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045141"},{"annotations":[115825],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0044821"},{"annotations":[115627],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905326"},{"annotations":[104175,110177],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1905263"},{"annotations":[81071,106126,72723,108537,91370,106647,117381,102373,94525,102436,102935,79466,70858,92575,94452,105663,93243],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0007131"},{"annotations":[103133],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905325"},{"annotations":[118525],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1904967"},{"annotations":[110903,109964,73430,119294,76613,78519,112151,119146,76019,80999],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000712"},{"annotations":[118074],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0062209"},{"annotations":[112141,99688,117767,112185,104234,110707,95586,103134,109638,91522,107281,100410,102313,92752,118763,115067,110964,90915,97342,115937,109321,111717,97096],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051455"}]},"cv_name":"biological_process","definition":"The first meiotic nuclear division in which homologous chromosomes are paired and segregated from each other, producing two haploid daughter nuclei.","definition_xrefs":["PMID:9334324","GOC:dph","GOC:jl","GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiosis I cell cycle process","termid":"GO:0061982"},{"relation_name":"is_a","term_name":"meiotic nuclear 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I","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["Wikipedia:Meiosis#Meiosis_I"],"synonyms":[{"name":"meiosis I nuclear division","type":"exact"}],"termid":"GO:0007127","terms_by_termid":{"GO:0000709":null,"GO:0000712":null,"GO:0007127":null,"GO:0007129":null,"GO:0007131":null,"GO:0010772":null,"GO:0010774":null,"GO:0010780":null,"GO:0030989":null,"GO:0030999":null,"GO:0031619":null,"GO:0032118":null,"GO:0032121":null,"GO:0044821":null,"GO:0045141":null,"GO:0045143":null,"GO:0051455":null,"GO:0051755":null,"GO:0062209":null,"GO:0070197":null,"GO:1904967":null,"GO:1905263":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null,"GO:1990813":null,"GO:1990918":null}}


id: MONDO:1010780
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Alopecia areata that occurs in horse.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alopecia areata, non-human animal","termid":"MONDO:1010140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alopecia areata, horse","secondary_identifiers":["OMIA:001702-9796"],"termid":"MONDO:1010780","xrefs":{"Monarch":{"xref_id":"1010780"}}}


id: GO:0005436
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + phosphate(out) = Na+(in) + phosphate(in).","definition_xrefs":["TC:2.A.1.14.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphate transmembrane transporter activity","termid":"GO:0005315"},{"relation_name":"is_a","term_name":"solute:sodium symporter activity","termid":"GO:0015370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"sodium:phosphate symporter activity","secondary_identifiers":["GO:0015321","Reactome:R-HSA-427656","Reactome:R-HSA-5687585","Reactome:R-HSA-427605","Reactome:R-HSA-2872498","Reactome:R-HSA-5625123","Reactome:R-HSA-5651697","Reactome:R-HSA-428609","Reactome:R-HSA-5651685","Reactome:R-HSA-427645","Reactome:R-HSA-5651971"],"synonyms":[{"name":"sodium-dependent phosphate transmembrane transporter activity","type":"related"},{"name":"sodium/phosphate symporter activity","type":"exact"}],"termid":"GO:0005436"}


id: FYPO:0001368
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which contractile ring assembly is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal actin cytoskeleton organization","termid":"FYPO:0001366"},{"relation_name":"is_a","term_name":"normal cytokinesis","termid":"FYPO:0001367"},{"relation_name":"is_a","term_name":"normal actomyosin contractile ring organization","termid":"FYPO:0007827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal actomyosin contractile ring assembly","synonyms":[{"name":"normal actomyosin contractile ring assembly during mitotic cell cycle","type":"related"},{"name":"normal actomyosin contractile ring assembly during vegetative growth","type":"exact"},{"name":"normal actomyosin contractile ring formation","type":"related"},{"name":"normal contractile ring assembly","type":"exact"},{"name":"normal cytokinesis, actomyosin contractile ring assembly","type":"exact"},{"name":"normal cytokinetic contractile ring assembly","type":"exact"},{"name":"normal cytokinetic ring assembly","type":"related"},{"name":"normal cytokinetic ring formation","type":"related"},{"name":"normal mitotic contractile ring assembly","type":"exact"}],"termid":"FYPO:0001368"}


id: PBO:0003195
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.3.4.5","termid":"PBO:0003195"}


id: PBO:0086412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative GPI-anchored protein; localized to the cell wall; involved in foam formation in sake mash by conferring hydrophobicity to the cell surface","termid":"PBO:0086412"}


id: MONDO:0013695
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hereditary nonpolyposis colon cancer in which the cause of the disease is a mutation in the TGFBR2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"Lynch syndrome","termid":"MONDO:0005835"},{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"hereditary nonpolyposis colon cancer","termid":"MONDO:0018630"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0000426","MONDO:0004335"],"is_obsolete":false,"name":"colorectal cancer, hereditary nonpolyposis, type 6","secondary_identifiers":["DOID:0070273","GARD:15789","MESH:C566039","UMLS:C1860896","MEDGEN:348732","OMIM:614331"],"synonyms":[{"name":"HNPCC6","type":"related"},{"name":"TGFBR2 hereditary nonpolyposis colon cancer","type":"exact"},{"name":"colon cancer, hereditary nonpolyposis, type 6","type":"related"},{"name":"colorectal cancer, hereditary nonpolyposis, type 6","type":"exact"},{"name":"hereditary nonpolyposis colon cancer caused by mutation in TGFBR2","type":"exact"}],"termid":"MONDO:0013695","xrefs":{"Monarch":{"xref_id":"0013695"}}}


id: MONDO:1012146
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"malignant hyperthermia, non-human animal","termid":"MONDO:1011713"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malignant hyperthermia, domestic cat","secondary_identifiers":["OMIA:000621-9685"],"termid":"MONDO:1012146","xrefs":{"Monarch":{"xref_id":"1012146"}}}


id: PBO:0052891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 10-2","termid":"PBO:0052891"}


id: PBO:0064781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase, Mg2+/Mn2+ dependent 1B","termid":"PBO:0064781"}


id: PBO:0031126
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-loss_of_viability_upon_nutrient_depletion","termid":"PBO:0031126"}


id: PBO:0089087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Noc complex subunit Noc201","termid":"PBO:0089087"}


id: PATO:0000702
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000702 threshold value (obsolete PATO:0000702)","termid":"PATO:0000702"}


id: PBO:0111918
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrin binding repeats","termid":"PBO:0111918"}


id: PBO:0072585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal RNA processing 7 homolog B, pseudogene","termid":"PBO:0072585"}


id: MOD:00220
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-arginine residue to a 4-hydroxy-L-arginine.","definition_xrefs":["RESID:AA0215","PubMed:7650037","PubMed:10966817"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monohydroxylated residue","termid":"MOD:00425"},{"relation_name":"is_a","term_name":"hydroxylated arginine","termid":"MOD:00682"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-hydroxy-L-arginine","synonyms":[{"name":"(2S,4Xi)-2-amino-5-[(diaminomethylidene)amino]-4-hydroxypentanoic acid","type":"exact"},{"name":"2-amino-5-(carbamimidamido)-4-hydroxypentanoic acid [tautomer]","type":"exact"},{"name":"2-amino-5-[(aminoiminomethyl)amino]-4-hydroxypentanoic acid [tautomer]","type":"exact"},{"name":"2-amino-5-guanidino-4-hydroxypentanoic acid","type":"exact"},{"name":"4-hydroxy-L-arginine","type":"exact"},{"name":"4-hydroxylated L-arginine","type":"exact"},{"name":"4HyArg","type":"exact"},{"name":"C(gamma)-hydroxyarginine","type":"exact"},{"name":"MOD_RES 4-hydroxyarginine","type":"exact"},{"name":"gamma-hydroxyarginine","type":"exact"}],"termid":"MOD:00220"}


id: PBO:0085556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein containing an N-terminal epsin-like domain; involved in clathrin recruitment and traffic between the Golgi and endosomes; associates with the clathrin adaptor Gga2p","termid":"PBO:0085556"}


id: GO:0060436
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a bronchiole is generated and organized. A bronchiole is the first airway branch that no longer contains cartilage; it is a branch of the bronchi.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube morphogenesis","termid":"GO:0035239"},{"relation_name":"part_of","term_name":"bronchiole development","termid":"GO:0060435"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bronchiole morphogenesis","termid":"GO:0060436"}


id: PBO:0075174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNRPE pseudogene 4","termid":"PBO:0075174"}


id: PBO:0070842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13a pseudogene 21","termid":"PBO:0070842"}


id: GO:0009805
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of coumarins, a class of compounds derived from the phenylacrylic skeleton of cinnamic acids.","definition_xrefs":["GOC:yl","GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenylpropanoid biosynthetic process","termid":"GO:0009699"},{"relation_name":"is_a","term_name":"coumarin metabolic process","termid":"GO:0009804"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"coumarin biosynthetic process","secondary_identifiers":["MetaCyc:PWY-5176"],"synonyms":[{"name":"coumarin anabolism","type":"exact"},{"name":"coumarin biosynthesis","type":"exact"},{"name":"coumarin formation","type":"exact"},{"name":"coumarin synthesis","type":"exact"}],"termid":"GO:0009805"}


id: PR:O94356
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- meu6 gene.","definition_xrefs":["UniProtKB:O94356","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic expression up-regulated protein 6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC428.07","synonyms":[{"name":"Spom972h-meu6","type":"exact"}],"termid":"PR:O94356"}


id: SO:0000659
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region that can be transcribed into a transfer-messenger RNA (tmRNA).","direct_ancestors":[{"relation_name":"is_a","term_name":"non_protein_coding","termid":"SO:0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tmRNA_encoding","synonyms":[{"name":"tmRNA encoding","type":"exact"}],"termid":"SO:0000659"}


id: PBO:0042141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine ligand 3 like 1","termid":"PBO:0042141"}


id: MONDO:1012584
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any arachnomelia syndrome that occurs in cattle due to a mutation in the SUOX gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arachnomelia syndrome, non-human animal","termid":"MONDO:1012955"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arachnomelia syndrome, SUOX-related, cattle","secondary_identifiers":["OMIA:000059-9913"],"synonyms":[{"name":"Arachnomelia, SUOX-related, cattle","type":"exact"}],"termid":"MONDO:1012584","xrefs":{"Monarch":{"xref_id":"1012584"}}}


id: PBO:0083590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; YPR012W is not an essential gene","termid":"PBO:0083590"}


id: PBO:0062762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily P member 2 pseudogene","termid":"PBO:0062762"}


id: GO:1903197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of L-dopa biosynthetic process.","definition_xrefs":["GO_REF:0000058","GOC:bf","GOC:PARL","PMID:16731528","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of L-dopa biosynthetic process","termid":"GO:1903195"},{"relation_name":"is_a","term_name":"positive regulation of amino acid biosynthetic process","termid":"GO:2000284"},{"relation_name":"positively_regulates","term_name":"L-dopa biosynthetic process","termid":"GO:1903185"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"positive regulation of L-dopa biosynthetic process","synonyms":[{"name":"activation of L-dopa anabolism","type":"narrow"},{"name":"activation of L-dopa biosynthesis","type":"narrow"},{"name":"activation of L-dopa biosynthetic process","type":"narrow"},{"name":"activation of L-dopa formation","type":"narrow"},{"name":"activation of L-dopa synthesis","type":"narrow"},{"name":"positive regulation of L-dopa anabolism","type":"exact"},{"name":"positive regulation of L-dopa biosynthesis","type":"exact"},{"name":"positive regulation of L-dopa formation","type":"exact"},{"name":"positive regulation of L-dopa synthesis","type":"exact"},{"name":"up regulation of L-dopa anabolism","type":"exact"},{"name":"up regulation of L-dopa biosynthesis","type":"exact"},{"name":"up regulation of L-dopa biosynthetic process","type":"exact"},{"name":"up regulation of L-dopa formation","type":"exact"},{"name":"up regulation of L-dopa synthesis","type":"exact"},{"name":"up-regulation of L-dopa anabolism","type":"exact"},{"name":"up-regulation of L-dopa biosynthesis","type":"exact"},{"name":"up-regulation of L-dopa biosynthetic process","type":"exact"},{"name":"up-regulation of L-dopa formation","type":"exact"},{"name":"up-regulation of L-dopa synthesis","type":"exact"},{"name":"upregulation of L-dopa anabolism","type":"exact"},{"name":"upregulation of L-dopa biosynthesis","type":"exact"},{"name":"upregulation of L-dopa biosynthetic process","type":"exact"},{"name":"upregulation of L-dopa formation","type":"exact"},{"name":"upregulation of L-dopa synthesis","type":"exact"}],"termid":"GO:1903197"}


id: PBO:0082744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the RSC chromatin remodeling complex; interacts with Rsc3p, Rsc30p, Ldb7p, and Htl1p to form a module important for a broad range of RSC functions","termid":"PBO:0082744"}


id: GO:0030666
data:
  {"annotated_genes":["SJAG_00104","SJAG_00800","SJAG_02805","SJAG_01167"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[110149,58581,79959,76140],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030122"}]},"cv_name":"cellular_component","definition":"The lipid bilayer surrounding an endocytic vesicle.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle membrane","termid":"GO:0030659"},{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"endocytic vesicle","termid":"GO:0030139"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00104":null,"SJAG_00800":null,"SJAG_01167":null,"SJAG_02805":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0031410","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"endocytic vesicle membrane","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0030666","terms_by_termid":{"GO:0030122":null}}


id: MONDO:0014363
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive nonsyndromic deafness in which the cause of the disease is a mutation in the GRXCR2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive nonsyndromic hearing loss 101","secondary_identifiers":["DOID:0110462","GARD:22651","MEDGEN:856148","OMIM:615837","UMLS:C3892049"],"synonyms":[{"name":"DFNB101","type":"narrow"},{"name":"GRXCR2 autosomal recessive nonsyndromic deafness","type":"narrow"},{"name":"autosomal recessive deafness 101","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness 101","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness caused by mutation in GRXCR2","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness type 101","type":"narrow"},{"name":"deafness, autosomal recessive 101","type":"narrow"},{"name":"deafness, autosomal recessive type 101","type":"narrow"}],"termid":"MONDO:0014363","xrefs":{"Monarch":{"xref_id":"0014363"}}}


id: GO:1905319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a mesenchymal stem cell from one site to another.","definition_xrefs":["PMID:24924806","GOC:TermGenie","PMID:25181476","GO_REF:0000091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration","termid":"GO:0016477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal stem cell migration","termid":"GO:1905319"}


id: PBO:0111329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome bigenesis rRNA methyltransferase Spb1","termid":"PBO:0111329"}


id: PR:Q9P7Q2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pfl9 gene.","definition_xrefs":["UniProtKB:Q9P7Q2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell agglutination protein C186.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC186.01","synonyms":[{"name":"Spom972h-pfl9","type":"exact"}],"termid":"PR:Q9P7Q2"}


id: PBO:0002502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein Pof11","termid":"PBO:0002502"}


id: PATO:0002310
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's being strong, thick or sturdy.","definition_xrefs":["PATOC:BF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"robust","termid":"PATO:0002310"}


id: PBO:0076331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SYS1-DBNDD2 readthrough (NMD candidate)","termid":"PBO:0076331"}


id: PBO:0072794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spalt like transcription factor 4","termid":"PBO:0072794"}


id: PBO:0025442
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homocystinuria","termid":"PBO:0025442"}


id: PBO:0025491
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cockayne syndrome","termid":"PBO:0025491"}


id: FYPO:0000878
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromere inner repeat regions occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K9 dimethylation at centromere inner repeat during vegetative growth","termid":"FYPO:0000868"},{"relation_name":"is_a","term_name":"decreased histone H3-K9 dimethylation at centromere during vegetative growth","termid":"FYPO:0000877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0002494","FYPO:0002274","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased histone H3-K9 dimethylation at centromere inner repeat during vegetative growth","synonyms":[{"name":"decreased histone H3 K9 dimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at centromere imr during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at centromere inner repeat during mitotic cell cycle","type":"related"},{"name":"decreased histone H3-K9 dimethylation at centromere inner repeat region during vegetative growth","type":"exact"},{"name":"decreased histone H3K9 dimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"decreased histone H3K9me2 at centromere inner repeat during vegetative growth","type":"exact"},{"name":"reduced histone H3-K9 dimethylation at centromere inner repeat during vegetative growth","type":"exact"},{"name":"v histone lysine H3 K9 dimethylation at centromere inner repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0000878"}


id: PBO:0058042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4263","termid":"PBO:0058042"}


id: GO:0033789
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 1,4-benzoquinone + H2O + phenylacetyl-CoA = 2 hydroquinone + phenylglyoxylyl-CoA.","definition_xrefs":["RHEA:15705"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH or CH2 groups, quinone or similar compound as acceptor","termid":"GO:0033695"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"phenylacetyl-CoA dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R07222","MetaCyc:1.17.5.1-RXN","EC:1.17.5.1"],"synonyms":[{"name":"phenylacetyl-CoA:acceptor oxidoreductase activity","type":"related"},{"name":"phenylacetyl-CoA:quinone oxidoreductase activity","type":"related"}],"termid":"GO:0033789"}


id: PBO:0082856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Core component of transport protein particle (TRAPP) complexes I-III; TRAPP complexes are related multimeric guanine nucleotide-exchange factor for the GTPase Ypt1p, regulating ER-Golgi traffic (TRAPPI), intra-Golgi traffic (TRAPPII), endosome-Golgi traffic (TRAPPII and III) and autophagy (TRAPPIII); human homolog is TRAPPC4","termid":"PBO:0082856"}


id: GO:0106389
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an ecdysteroid + ATP = an ecdysteroid 22-phosphate + ADP + H+.","definition_xrefs":["PMID:16899460","RHEA:67972"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016301","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"ecdysteroid 22-kinase activity","secondary_identifiers":["MetaCyc:RXN-14755"],"synonyms":[{"name":"EcKinase","type":"related"}],"termid":"GO:0106389"}


id: PBO:0120103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Coronin; cortical actin cytoskeletal component that associates with the Arp2p/Arp3p complex to regulate its activity; plays a role in regulation of actin patch assembly; binds directly to Aim7p, forms a high affinity ternary Crn1-Gmf1-Arp2/3 complex, and binds to F-actin branch junctions to synergistically enhance Aim7p-mediated actin filament debranching","termid":"PBO:0120103"}


id: GO:0061174
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Terminal inflated portion of the axon of a glutamatergic neuron, containing the specialized apparatus necessary to release neurotransmitters that will induce the contraction of muscle. The axon terminus is considered to be the whole region of thickening and the terminal bouton is a specialized region of it.","definition_xrefs":["GOC:mc","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terminal bouton","termid":"GO:0043195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"type I terminal bouton","synonyms":[{"name":"type I terminal button","type":"exact"}],"termid":"GO:0061174"}


id: PBO:0080428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS51 pseudogene 12","termid":"PBO:0080428"}


id: GO:0034931
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-hydroxypyrene + XCH3 = 1-methoxypyrene + HX.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-hydroxypyrene methyltransferase activity (obsolete GO:0034931)","termid":"GO:0034931"}


id: MONDO:1010985
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hydrocephalus that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrocephalus, non-human animal","termid":"MONDO:1010233"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrocephalus, domestic cat","secondary_identifiers":["OMIA:000487-9685"],"termid":"MONDO:1010985","xrefs":{"Monarch":{"xref_id":"1010985"}}}


id: PBO:0057486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 604","termid":"PBO:0057486"}


id: PR:P78968
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pzh1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P78968"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein phosphatase PP-Z (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC57A7.08","synonyms":[{"name":"Spom972h-pzh1","type":"exact"}],"termid":"PR:P78968"}


id: PBO:0053859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1132","termid":"PBO:0053859"}


id: GO:0030409
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-formimidoyltetrahydrofolate + L-glutamate = tetrahydrofolate + N-formimidoyl-L-glutamate.","definition_xrefs":["RHEA:15097"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydroxymethyl-, formyl- and related transferase activity","termid":"GO:0016742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016741","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"glutamate formimidoyltransferase activity","secondary_identifiers":["MetaCyc:GLUTAMATE-FORMIMINOTRANSFERASE-RXN","EC:2.1.2.5","GO:0030407"],"synonyms":[{"name":"5-formimidoyltetrahydrofolate:L-glutamate N-formimidoyltransferase activity","type":"related"},{"name":"formimidoyltransferase activity","type":"broad"},{"name":"formiminoglutamic acid transferase activity","type":"related"},{"name":"formiminoglutamic formiminotransferase activity","type":"related"},{"name":"formiminotransferase activity","type":"broad"},{"name":"glutamate formiminotransferase activity","type":"exact"},{"name":"glutamate formyltransferase activity","type":"related"}],"termid":"GO:0030409"}


id: GO:0009171
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of purine deoxyribonucleoside monophosphate, a compound consisting of a purine base linked to a deoxyribose sugar esterified with phosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleoside monophosphate biosynthetic process","termid":"GO:0009127"},{"relation_name":"is_a","term_name":"deoxyribonucleoside monophosphate biosynthetic process","termid":"GO:0009157"},{"relation_name":"is_a","term_name":"purine deoxyribonucleoside monophosphate metabolic process","termid":"GO:0009170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"purine deoxyribonucleoside monophosphate biosynthetic process","synonyms":[{"name":"purine deoxyribonucleoside monophosphate anabolism","type":"exact"},{"name":"purine deoxyribonucleoside monophosphate biosynthesis","type":"exact"},{"name":"purine deoxyribonucleoside monophosphate formation","type":"exact"},{"name":"purine deoxyribonucleoside monophosphate synthesis","type":"exact"}],"termid":"GO:0009171"}


id: MONDO:1011029
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An early onset syndrome of impaired neuromuscular transmission associated with a defect in acetylcholine synthesis in dogs due to a variation in the CHAT gene.","definition_xrefs":["PMID:32668077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"congenital neuromuscular disease, non-human animal","termid":"MONDO:1011851"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital myasthenic syndrome, CHAT-related, dog","secondary_identifiers":["OMIA:002072-9615"],"termid":"MONDO:1011029","xrefs":{"Monarch":{"xref_id":"1011029"}}}


id: PBO:0047046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 110 member A","termid":"PBO:0047046"}


id: PBO:0091666
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long non-coding RNAs (mlonRNA) initiated from sites upstream of fbp1 are transcribed prior to full transcriptional activation of fbp1 during glucose starvation","termid":"PBO:0091666"}


id: PBO:0059412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S35 pseudogene 2","termid":"PBO:0059412"}


id: FYPO:0005035
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the phosphorylation of one or more specific proteins, or of specific protein sites, is normal (i.e. indistinguishable from wild type) when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation","termid":"FYPO:0004422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal protein phosphorylation during nitrogen starvation","synonyms":[{"name":"normal protein phosphorylation during nitrogen depletion","type":"exact"},{"name":"normal protein phosphorylation during nitrogen deprivation","type":"exact"}],"termid":"FYPO:0005035"}


id: GO:1900488
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of [2Fe-2S] cluster assembly.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of [2Fe-2S] cluster assembly","termid":"GO:1900487"},{"relation_name":"is_a","term_name":"negative regulation of iron-sulfur cluster assembly","termid":"GO:1903330"},{"relation_name":"negatively_regulates","term_name":"[2Fe-2S] cluster assembly","termid":"GO:0044571"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016226"},{"rel_name":"negatively_regulates","termid":"GO:0016226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0016226","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of [2Fe-2S] cluster assembly","synonyms":[{"name":"down regulation of 2Fe-2S cluster assembly","type":"exact"},{"name":"down regulation of [2Fe-2S] cluster assembly","type":"exact"},{"name":"down regulation of [2Fe-2S] cluster biosynthetic process","type":"related"},{"name":"down-regulation of 2Fe-2S cluster assembly","type":"exact"},{"name":"down-regulation of [2Fe-2S] cluster assembly","type":"exact"},{"name":"down-regulation of [2Fe-2S] cluster biosynthetic process","type":"related"},{"name":"downregulation of 2Fe-2S cluster assembly","type":"exact"},{"name":"downregulation of [2Fe-2S] cluster assembly","type":"exact"},{"name":"downregulation of [2Fe-2S] cluster biosynthetic process","type":"related"},{"name":"inhibition of 2Fe-2S cluster assembly","type":"narrow"},{"name":"inhibition of [2Fe-2S] cluster assembly","type":"narrow"},{"name":"inhibition of [2Fe-2S] cluster biosynthetic process","type":"related"},{"name":"negative regulation of 2Fe-2S cluster assembly","type":"exact"},{"name":"negative regulation of [2Fe-2S] cluster biosynthetic process","type":"related"}],"termid":"GO:1900488"}


id: GO:0071061
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha6-beta4 integrin complex bound to the tetraspanin CD151.","definition_xrefs":["PMID:10811835"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"alpha6-beta4 integrin-CD151 complex","synonyms":[{"name":"ITGA6-ITGB4-CD151 complex","type":"narrow"}],"termid":"GO:0071061"}


id: PBO:0042807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"competing endogenous lncRNA 1 for miR-4707-5p and miR-4767","termid":"PBO:0042807"}


id: MONDO:0007233
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital defect in the neck that occurs during early embryonic development. It is caused by developmental abnormalities of the pharyngeal arches and results in the development of a cyst or a fissure in the side of the neck.","definition_xrefs":["NCIT:C104813"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cysts and fistulae of the face and oral cavity","termid":"MONDO:0015476"},{"relation_name":"is_a","term_name":"hereditary otorhinolaryngologic disease","termid":"MONDO:0018751"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"second branchial cleft anomaly","secondary_identifiers":["MEDGEN:840602","GARD:16968","Orphanet:141022","SCTID:73381000119100","OMIM:113600","UMLS:C3874315"],"synonyms":[{"name":"branchial cleft","type":"exact"},{"name":"branchial cleft anomalies","type":"related"},{"name":"branchial cleft remnant","type":"exact"},{"name":"branchial cysts","type":"related"},{"name":"second branchial cleft cyst","type":"exact"},{"name":"second branchial cleft fistula","type":"exact"}],"termid":"MONDO:0007233","xrefs":{"Monarch":{"xref_id":"0007233"}}}


id: PBO:0089607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial serine/threonine protein phosphatase PP2C catalytic subunit Ptc4","termid":"PBO:0089607"}


id: GO:0015267
data:
  {"annotated_genes":["SJAG_00048","SJAG_00915","SJAG_00133","SJAG_03925","SJAG_MIT09","SJAG_02532","SJAG_02564","SJAG_00836","SJAG_03895","SJAG_02877","SJAG_00438","SJAG_03114","SJAG_04122","SJAG_MIT37","SJAG_02598","SJAG_MIT15","SJAG_00542","SJAG_02322","SJAG_05229","SJAG_04731","SJAG_02105","SJAG_01090","SJAG_00985","SJAG_04136","SJAG_07003","SJAG_04471","SJAG_01168","SJAG_04668","SJAG_02019","SJAG_05342","SJAG_05204"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71507,77044],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008519"},{"annotations":[74100,78949,116278],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005262"},{"annotations":[81530,74718],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005227"},{"annotations":[72097],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005254"},{"annotations":[76134],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008331"},{"annotations":[105562],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140135"},{"annotations":[97465],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008381"},{"annotations":[71859,81016,120938,74420,109625,58026,109717,120945,71566,79830,79506,103615,120932,77502,95646,95055,96626],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046933"},{"annotations":[94121,115764,101415,94179],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015275"},{"annotations":[73368],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008308"}]},"cv_name":"molecular_function","definition":"Enables the energy-independent facilitated diffusion of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"passive transmembrane transporter activity","termid":"GO:0022803"}],"gene_count":31,"genes_by_uniquename":{"SJAG_00048":null,"SJAG_00133":null,"SJAG_00438":null,"SJAG_00542":null,"SJAG_00836":null,"SJAG_00915":null,"SJAG_00985":null,"SJAG_01090":null,"SJAG_01168":null,"SJAG_02019":null,"SJAG_02105":null,"SJAG_02322":null,"SJAG_02532":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_02877":null,"SJAG_03114":null,"SJAG_03895":null,"SJAG_03925":null,"SJAG_04122":null,"SJAG_04136":null,"SJAG_04471":null,"SJAG_04668":null,"SJAG_04731":null,"SJAG_05204":null,"SJAG_05229":null,"SJAG_05342":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"channel activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9905999","Reactome:R-HSA-9857682","GO:0015249","Reactome:R-HSA-8953430","TC:1","GO:0015268","Reactome:R-HSA-9857649","GO:0022838","Reactome:R-HSA-3779381"],"synonyms":[{"name":"alpha-type channel activity","type":"related"},{"name":"channel-forming toxin activity","type":"related"},{"name":"channel/pore class transporter activity","type":"exact"},{"name":"nonselective channel activity","type":"exact"},{"name":"pore activity","type":"broad"},{"name":"pore class transporter activity","type":"related"},{"name":"substrate-specific channel activity","type":"related"}],"termid":"GO:0015267","terms_by_termid":{"GO:0005227":null,"GO:0005254":null,"GO:0005262":null,"GO:0008308":null,"GO:0008331":null,"GO:0008381":null,"GO:0008519":null,"GO:0015275":null,"GO:0046933":null,"GO:0140135":null}}


id: MONDO:0054654
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"combined oxidative phosphorylation deficiency","termid":"MONDO:0000732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"combined oxidative phosphorylation deficiency 32","secondary_identifiers":["MEDGEN:1617600","UMLS:C4540029","OMIM:617664","DOID:0111492"],"synonyms":[{"name":"COXPD32","type":"related"},{"name":"combined oxidative phosphorylation deficiency 32","type":"exact"}],"termid":"MONDO:0054654","xrefs":{"Monarch":{"xref_id":"0054654"}}}


id: MONDO:1012221
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"portosystemic hepatic encephalopathy, non-human animal","termid":"MONDO:1011777"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"portosystemic hepatic encephalopathy, dog","secondary_identifiers":["OMIA:000816-9615"],"termid":"MONDO:1012221","xrefs":{"Monarch":{"xref_id":"1012221"}}}


