# terms

id: PR:O59751
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- klp6 gene.","definition_xrefs":["UniProtKB:O59751","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin-like protein 6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1685.15c","synonyms":[{"name":"Spom972h-klp6","type":"exact"}],"termid":"PR:O59751"}


id: PBO:0113276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane protein of unknown function; targeted to vacuole via AP-3 pathway; truncation and overexpression suppresses lethality of G-alpha protein deficiency","termid":"PBO:0113276"}


id: PBO:0062678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 14 subfamily K member 1","termid":"PBO:0062678"}


id: PBO:0067303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 388, pseudogene","termid":"PBO:0067303"}


id: MONDO:0060456
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebral sclerosis, diffuse, scholz type","secondary_identifiers":["MEDGEN:335049","UMLS:C1844884","OMIM:302700","MESH:C564449"],"synonyms":[{"name":"cerebral sclerosis, diffuse, scholz type","type":"exact"}],"termid":"MONDO:0060456","xrefs":{"Monarch":{"xref_id":"0060456"}}}


id: GO:0018874
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving benzoate, the anion of benzoic acid (benzenecarboxylic acid), a fungistatic compound widely used as a food preservative; it is conjugated to glycine in the liver and excreted as hippuric acid.","definition_xrefs":["ISBN:0721662544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"benzoate metabolic process","secondary_identifiers":["UM-BBD_pathwayID:benz2"],"synonyms":[{"name":"benzoate metabolism","type":"exact"}],"termid":"GO:0018874"}


id: PBO:0073029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secernin 2","termid":"PBO:0073029"}


id: PBO:0045798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endothelin 2","termid":"PBO:0045798"}


id: GO:0010140
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The pathway by which adenine, hypoxanthine and their nucleosides from purine nucleotides breakdown are converted back to purine nucleotides. The salvage pathway is important where there is no de-novo purine nucleotide biosynthesis.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete adenine, hypoxanthine and their nucleoside salvage (obsolete GO:0010140)","synonyms":[{"name":"adenine, hypoxanthine and their nucleoside salvage","type":"exact"}],"termid":"GO:0010140"}


id: PBO:0062817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OSBPL10 antisense RNA 1","termid":"PBO:0062817"}


id: GO:0047630
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-ADP-2-phosphoglycerate + H2O = 3-ADP-glycerate + phosphate.","definition_xrefs":["RHEA:15861"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787","GO:0016788"],"is_obsolete":false,"name":"ADP-phosphoglycerate phosphatase activity","secondary_identifiers":["KEGG_REACTION:R03969","MetaCyc:ADP-PHOSPHOGLYCERATE-PHOSPHATASE-RXN","EC:3.1.3.28"],"synonyms":[{"name":"3-(ADP)-2-phosphoglycerate phosphohydrolase activity","type":"related"},{"name":"ADPphosphoglycerate phosphatase activity","type":"related"},{"name":"adenosine diphosphate phosphoglycerate phosphatase activity","type":"related"}],"termid":"GO:0047630"}


id: MONDO:0019552
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Centrifugal lipodystrophy is a rare, acquired, localized lipodistrophy characterized by single or, occasionally, multiple, centrifugally progressive, asymptomatic to sometimes mildly tender, hypopigmented, lipoatrophic skin depressions with weakly erymatheous inflammatory borders, typically associated with regional ipsilateral lymph nodes swelling. Lesions typically occur on lower trunk (in particular groin and abdomen region), followed by upper trunk (axilla and neighboring regions) and, rarely, neck and head. It is usually not associated with systemic disease and is typically self-resolving.","definition_xrefs":["Orphanet:90156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localized lipodystrophy","termid":"MONDO:0019194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005093"],"is_obsolete":false,"name":"centrifugal lipodystrophy","secondary_identifiers":["icd11.foundation:1561732835","MEDGEN:590539","UMLS:C0406605","GARD:19125"],"synonyms":[{"name":"lipodystrophia centrifugalis abdominalis infantilis","type":"exact"}],"termid":"MONDO:0019552","xrefs":{"Monarch":{"xref_id":"0019552"}}}


id: PBO:0088338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospho-2-dehydro-3-deoxyheptonate aldolase","termid":"PBO:0088338"}


id: PBO:0053488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 463","termid":"PBO:0053488"}


id: PBO:0087590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the ARP2/3 complex; ARP2/3 is required for the motility and integrity of cortical actin patches; mutation is functionally complemented by human ARPC4","termid":"PBO:0087590"}


id: PBO:0080661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WAP four-disulfide core domain 6","termid":"PBO:0080661"}


id: PBO:0029809
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_mixed_population_including_germinated_spores_with_elongated_germ_tubes_and_cells_with_normal_morphology_(obsolete_FYPO:0002428)","termid":"PBO:0029809"}


id: PBO:0081727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 655","termid":"PBO:0081727"}


id: GO:0008455
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R.","definition_xrefs":["EC:2.4.1.143"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a glycoprotein","termid":"GO:0140103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0140096","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.143-RXN","Reactome:R-HSA-9694656","RHEA:12941","Reactome:R-HSA-975829","Reactome:R-HSA-4793955"],"synonyms":[{"name":"GnTII activity","type":"related"},{"name":"N-acetylglucosaminyltransferase II activity","type":"related"},{"name":"N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase II activity","type":"related"},{"name":"UDP-GlcNAc:mannoside alpha-(1,6) acetylglucosaminyltransferase activity","type":"related"},{"name":"UDP-GlcNAc:mannoside alpha-1,6 acetylglucosaminyltransferase activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:6-(alpha-D-mannosyl)-beta-D-mannosyl-glycoprotein 2-beta-N-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"acetylglucosaminyltransferase II activity","type":"related"},{"name":"alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"alpha-1,6-mannosylglycoprotein beta-1,2-N-acetylglucosaminyltransferase activity","type":"exact"},{"name":"uridine diphosphoacetylglucosamine-alpha-1,6-mannosylglycoprotein beta-1,2-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-alpha-D-mannoside beta(1,2)-acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-alpha-D-mannoside beta-1,2-acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-mannoside alpha(1,6)-acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-mannoside alpha-1,6-acetylglucosaminyltransferase activity","type":"related"}],"termid":"GO:0008455"}


id: GO:0033573
data:
  {"annotated_genes":["SJAG_04677","SJAG_04675"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[79409,79625],"is_not":false,"summary":null,"term":"GO:0033573"}]},"cv_name":"cellular_component","definition":"A protein complex composed of a multicopper ferroxidase that oxidizes Fe(II) to Fe(III), and a ferric iron permease that transports the produced Fe(III) into the cell. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations.","definition_xrefs":["GOC:jp","PMID:16522632","PMID:8599111"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"is_a","term_name":"transmembrane transporter complex","termid":"GO:1902495"},{"relation_name":"is_a","term_name":"ferroxidase complex","termid":"GO:1905862"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04675":null,"SJAG_04677":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"high-affinity iron permease complex","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"high affinity iron permease complex","type":"exact"}],"termid":"GO:0033573","terms_by_termid":{"GO:0033573":null}}


id: PBO:0006192
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_presence_of","termid":"PBO:0006192"}


id: PBO:0045984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"euchromatic histone lysine methyltransferase 2","termid":"PBO:0045984"}


id: MONDO:0003617
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chronic inflammation of the fallopian tube. It usually follows an acute inflammatory attack.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"salpingitis","termid":"MONDO:0003619"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chronic salpingitis","secondary_identifiers":["ICD10CM:N70.11","icd11.foundation:1932766800","DOID:5731","UMLS:C0269041","SCTID:55551005","MEDGEN:82839","NCIT:C40118"],"synonyms":[{"name":"salpingitis, chronic","type":"exact"}],"termid":"MONDO:0003617","xrefs":{"Monarch":{"xref_id":"0003617"}}}


id: PBO:0079423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta class I pseudogene 6","termid":"PBO:0079423"}


id: PBO:0109005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STAG3 cohesin complex component like 3 (pseudogene)","termid":"PBO:0109005"}


id: PBO:0001297
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.2.11","termid":"PBO:0001297"}


id: CHEBI:35780
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphate ion","termid":"CHEBI:35780"}


id: MONDO:0035694
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"combined immunodeficiency","termid":"MONDO:0015131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"combined immunodeficiency due to RELA haploinsufficiency","secondary_identifiers":["GARD:22392","UMLS:C5680288","MEDGEN:1843216","Orphanet:596759"],"synonyms":[{"name":"CID due to RELA haploinsufficiency","type":"exact"}],"termid":"MONDO:0035694","xrefs":{"Monarch":{"xref_id":"0035694"}}}


id: MONDO:1012980
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mucolipidosis that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal storage disease, non-human animal","termid":"MONDO:1010171"},{"relation_name":"is_a","term_name":"developmental defect during embryogenesis, non-human animal","termid":"MONDO:1011310"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucolipidosis, non-human animal","termid":"MONDO:1012980","xrefs":{"Monarch":{"xref_id":"1012980"}}}


id: PBO:0088314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bromodomain protein Bdc1","termid":"PBO:0088314"}


id: PBO:0081740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF670-ZNF695 readthrough (NMD candidate)","termid":"PBO:0081740"}


id: PBO:0002135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER protein translocation subcomplex subunit Sec62 (predicted)","termid":"PBO:0002135"}


id: MONDO:0010996
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary hemorrhagic telangiectasia","termid":"MONDO:0019180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"hereditary hemorrhagic telangiectasia type 3","secondary_identifiers":["UMLS:C1832774","GARD:9902","MEDGEN:371403","MESH:C537140","OMIM:601101"],"synonyms":[{"name":"HHT3","type":"related"},{"name":"ORW3","type":"related"},{"name":"Osler Weber Rendu syndrome type 3","type":"related"},{"name":"telangiectasia hereditary hemorrhagic type 3","type":"related"},{"name":"telangiectasia, hereditary hemorrhagic, type 3","type":"related"}],"termid":"MONDO:0010996","xrefs":{"Monarch":{"xref_id":"0010996"}}}


id: GO:0098591
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The leaflet the apical region of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.","definition_xrefs":["GOC:dos","GOC:ab"],"direct_ancestors":[{"relation_name":"is_a","term_name":"external side of plasma membrane","termid":"GO:0009897"},{"relation_name":"part_of","term_name":"apical plasma membrane","termid":"GO:0016324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"part_of","termid":"GO:0009986"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0009986","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"external side of apical plasma membrane","termid":"GO:0098591"}


id: FYPO:0006653
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of flap-structured DNA binding by a gene product is normal (i.e. indistinguishable from wild type). The relevant gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal DNA binding","termid":"FYPO:0000655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000653"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000257","FYPO:0000653"],"is_obsolete":false,"name":"normal flap-structured DNA binding","termid":"FYPO:0006653"}


id: PBO:0058684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6812","termid":"PBO:0058684"}


id: MONDO:0000576
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete CD3delta deficiency (obsolete MONDO:0000576)","termid":"MONDO:0000576","xrefs":{"Monarch":{"xref_id":"0000576"}}}


id: GO:0120062
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of any gastric emptying process, the process in which the liquid and liquid-suspended solid contents of the stomach exit through the pylorus into the duodenum.","definition_xrefs":["PMID:15890336","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of digestive system process","termid":"GO:0060456"},{"relation_name":"is_a","term_name":"regulation of gastric emptying","termid":"GO:0120060"},{"relation_name":"positively_regulates","term_name":"gastric emptying","termid":"GO:0035483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of gastric emptying","termid":"GO:0120062"}


id: PBO:0090395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein, G-patch type, splicing factor 45 ortholog","termid":"PBO:0090395"}


id: MONDO:0012108
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A spondyloepimetaphyseal dysplasia characterized by disproportionate early-onset dwarfism, bowing of the lower limbs, short, wide and stocky long bones with severe epiphyseal and metaphyseal changes, lumbar lordosis, hypoplastic iliac bones, flat ovoid vertebral bodies and normal hands.","definition_xrefs":["Orphanet:156728"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"spondyloepiphyseal dysplasia","termid":"MONDO:0016761"},{"relation_name":"is_a","term_name":"spondyloepimetaphyseal dysplasia","termid":"MONDO:0100510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"spondyloepimetaphyseal dysplasia, matrilin-3 type","secondary_identifiers":["UMLS:C1837481","GARD:10611","OMIM:608728","MESH:C563869","icd11.foundation:1983063881","MEDGEN:325181","SCTID:719166003"],"synonyms":[{"name":"SEMD MATN3-related","type":"related"},{"name":"SEMD, MATN3-related","type":"exact"},{"name":"SEMD, matrilin-3 type","type":"exact"},{"name":"spondyloepimetaphyseal dysplasia matrilin-3 related","type":"related"},{"name":"spondyloepimetaphyseal dysplasia matrilin-3 type","type":"related"},{"name":"spondyloepimetaphyseal dysplasia, Borochowitz-Cormier-Daire type","type":"exact"},{"name":"spondyloepimetaphyseal dysplasia, matrilin-3 related","type":"related"}],"termid":"MONDO:0012108","xrefs":{"Monarch":{"xref_id":"0012108"}}}


id: GO:0031824
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 1E serotonin receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled serotonin receptor binding","termid":"GO:0031821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"type 1E serotonin receptor binding","synonyms":[{"name":"5-hydroxytryptamine 1E receptor binding","type":"exact"},{"name":"type 1E serotonin receptor ligand","type":"narrow"}],"termid":"GO:0031824"}


id: GO:1905196
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of ATPase activity, uncoupled.","definition_xrefs":["GOC:TermGenie","PMID:26545917","GO_REF:0000059"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of ATPase activity, uncoupled (obsolete GO:1905196)","synonyms":[{"name":"activation of ATPase activity, uncoupled","type":"narrow"},{"name":"activation of adenylpyrophosphatase activity","type":"related"},{"name":"positive regulation of adenylpyrophosphatase activity","type":"related"},{"name":"up regulation of ATPase activity, uncoupled","type":"exact"},{"name":"up regulation of adenylpyrophosphatase activity","type":"related"},{"name":"up-regulation of ATPase activity, uncoupled","type":"exact"},{"name":"up-regulation of adenylpyrophosphatase activity","type":"related"},{"name":"upregulation of ATPase activity, uncoupled","type":"exact"},{"name":"upregulation of adenylpyrophosphatase activity","type":"related"}],"termid":"GO:1905196"}


id: PATO:0002129
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A disposition inhering in a tumour by virtue of the bearer's disposition to invade surrounding tissues.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplastic","termid":"PATO:0002011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neoplastic, invasive","termid":"PATO:0002129"}


id: GO:0106021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of vesicle docking.","definition_xrefs":["PMID:22810233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"negative regulation of transport","termid":"GO:0051051"},{"relation_name":"is_a","term_name":"regulation of vesicle docking","termid":"GO:0106020"},{"relation_name":"negatively_regulates","term_name":"vesicle docking","termid":"GO:0048278"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0140056"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0140056"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0140056","GO:0008150"],"is_obsolete":false,"name":"negative regulation of vesicle docking","synonyms":[{"name":"negative regulation of vesicle to membrane docking","type":"exact"}],"termid":"GO:0106021"}


id: GO:0033684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the regulated release of luteinizing hormone.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gonadotropin secretion","termid":"GO:0032276"},{"relation_name":"regulates","term_name":"luteinizing hormone secretion","termid":"GO:0032275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of luteinizing hormone secretion","termid":"GO:0033684"}


id: GO:1900637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of asperfuranone biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of polyketide biosynthetic process","termid":"GO:1900732"},{"relation_name":"is_a","term_name":"regulation of alcohol biosynthetic process","termid":"GO:1902930"},{"relation_name":"regulates","term_name":"asperfuranone biosynthetic process","termid":"GO:1900554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0019748"],"is_obsolete":false,"name":"regulation of asperfuranone biosynthetic process","synonyms":[{"name":"regulation of asperfuranone anabolism","type":"exact"},{"name":"regulation of asperfuranone biosynthesis","type":"exact"},{"name":"regulation of asperfuranone formation","type":"exact"},{"name":"regulation of asperfuranone synthesis","type":"exact"}],"termid":"GO:1900637"}


id: GO:0071737
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An IgG immunoglobulin complex that is present in the plasma membrane of B cells and is composed of two identical immunoglobulin heavy chains of an IgG isotype and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins.","definition_xrefs":["ISBN:0781765196","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B cell receptor complex","termid":"GO:0019815"},{"relation_name":"is_a","term_name":"IgG immunoglobulin complex","termid":"GO:0071735"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"IgG B cell receptor complex","synonyms":[{"name":"membrane-bound IgG","type":"narrow"},{"name":"membrane-bound IgG1","type":"narrow"},{"name":"membrane-bound IgG2","type":"narrow"},{"name":"membrane-bound IgG2a","type":"narrow"},{"name":"membrane-bound IgG2b","type":"narrow"},{"name":"membrane-bound IgG2c","type":"narrow"},{"name":"membrane-bound IgG3","type":"narrow"},{"name":"membrane-bound IgG4","type":"narrow"},{"name":"surface IgG","type":"narrow"},{"name":"surface IgG1","type":"narrow"},{"name":"surface IgG2","type":"narrow"},{"name":"surface IgG2a","type":"narrow"},{"name":"surface IgG2b","type":"narrow"},{"name":"surface IgG2c","type":"narrow"},{"name":"surface IgG3","type":"narrow"},{"name":"surface IgG4","type":"narrow"}],"termid":"GO:0071737"}


id: PBO:0069687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 966, pseudogene","termid":"PBO:0069687"}


id: GO:0106061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of exit from meiosis.","definition_xrefs":["PMID:11493649","GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of exit from meiosis","termid":"GO:0106060"},{"relation_name":"is_a","term_name":"negative regulation of meiotic cell cycle phase transition","termid":"GO:1901994"},{"relation_name":"negatively_regulates","term_name":"exit from meiosis","termid":"GO:1990947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"negative regulation of exit from meiosis","termid":"GO:0106061"}


id: PR:Q9P7L0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC21C3.14c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7L0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C21C3.14c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21C3.14c","synonyms":[{"name":"Spom972h-SPBC21C3.14c","type":"exact"}],"termid":"PR:Q9P7L0"}


id: MONDO:0000540
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A well differentiated, low grade neuroendocrine tumor (carcinoid tumor) that arises from the small intestine. The mitotic count is less than 2 per 10 HPF and/or the Ki67 index is equal to or less than 2 percent.","definition_xrefs":["NCIT:C4638"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small intestine neuroendocrine tumor, well differentiated, low or intermediate grade","termid":"MONDO:0002995"},{"relation_name":"is_a","term_name":"intestinal neuroendocrine tumor G1","termid":"MONDO:0021533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"small intestinal neuroendocrine tumor G1","secondary_identifiers":["MEDGEN:91150","SCTID:276818002","UMLS:C0349536","DOID:0050925"],"synonyms":[{"name":"carcinoid tumor of small bowel","type":"exact"},{"name":"carcinoid tumor of small intestine","type":"exact"},{"name":"carcinoid tumor of the small bowel","type":"exact"},{"name":"carcinoid tumor of the small intestine","type":"exact"},{"name":"carcinoid tumour of small bowel","type":"exact"},{"name":"carcinoid tumour of small intestine","type":"exact"},{"name":"carcinoid tumour of the small bowel","type":"exact"},{"name":"carcinoid tumour of the small intestine","type":"exact"},{"name":"grade 1 neuroendocrine neoplasm of small intestine","type":"exact"},{"name":"small bowel carcinoid tumor","type":"exact"},{"name":"small bowel carcinoid tumour","type":"exact"},{"name":"small intestinal NET G1","type":"exact"},{"name":"small intestinal carcinoid tumor","type":"exact"},{"name":"small intestinal carcinoid tumour","type":"exact"},{"name":"small intestinal neuroendocrine tumor G1","type":"exact"},{"name":"small intestine NET G1","type":"exact"},{"name":"small intestine carcinoid neuroendocrine tumor","type":"related"},{"name":"small intestine carcinoid neuroendocrine tumour","type":"related"},{"name":"small intestine carcinoid tumor","type":"exact"},{"name":"small intestine carcinoid tumor (disease)","type":"exact"},{"name":"small intestine carcinoid tumour","type":"exact"},{"name":"small intestine carcinoid tumour (disease)","type":"exact"},{"name":"small intestine neuroendocrine neoplasm G1","type":"exact"},{"name":"small intestine neuroendocrine tumor, well differentiated, low grade","type":"exact"}],"termid":"MONDO:0000540","xrefs":{"Monarch":{"xref_id":"0000540"}}}


id: PBO:0011406
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-entity","termid":"PBO:0011406"}


id: GO:0035570
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The methylation of the N-terminal serine of proteins.","definition_xrefs":["PMID:20668449"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein amino acid methylation","termid":"GO:0006480"},{"relation_name":"is_a","term_name":"peptidyl-serine modification","termid":"GO:0018209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"N-terminal peptidyl-serine methylation","termid":"GO:0035570"}


id: GO:0018903
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving members of the 1,3-dichloropropene family, which includes cis- and trans-1,3-dichloropropene. The 1,3-dichloropropenes are chlorinated hydrocarbons and the major active ingredients of commercial products for control of plant-parasitic nematodes.","definition_xrefs":["UM-BBD_pathwayID:cpr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chlorinated hydrocarbon metabolic process","termid":"GO:0042196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"1,3-dichloropropene metabolic process","synonyms":[{"name":"1,3-dichloropropene metabolism","type":"exact"},{"name":"1,3-dichloropropylene metabolic process","type":"exact"},{"name":"1,3-dichloropropylene metabolism","type":"exact"},{"name":"gamma-chloroallylchloride metabolic process","type":"exact"},{"name":"gamma-chloroallylchloride metabolism","type":"exact"}],"termid":"GO:0018903"}


id: PBO:0079245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetratricopeptide repeat domain 19","termid":"PBO:0079245"}


id: PBO:0059443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane spanning 4-domains A14","termid":"PBO:0059443"}


id: PBO:0075017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 115-28","termid":"PBO:0075017"}


id: MONDO:0002419
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neurological disorder presenting in childhood that is characterized by motor and/or phonic tics that occur daily or nearly daily for one to twelve months and are not attributed to an identifiable cause.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tic disorder","termid":"MONDO:0002420"},{"relation_name":"is_a","term_name":"movement disorder","termid":"MONDO:0005395"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient tic disorder","secondary_identifiers":["ICD9:307.21","ICD10CM:F95.0","SCTID:56573006","MEDGEN:52814","DOID:2768","NCIT:C116767","UMLS:C0040702"],"synonyms":[{"name":"benign Tic disorder of childhood","type":"exact"}],"termid":"MONDO:0002419","xrefs":{"Monarch":{"xref_id":"0002419"}}}


id: PR:Q9Y7V0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug117 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7V0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 117 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC645.11c","synonyms":[{"name":"Spom972h-mug117","type":"exact"}],"termid":"PR:Q9Y7V0"}


id: GO:0044347
data:
  {"annotated_genes":["SJAG_01017","SJAG_00667"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95793,101938],"is_not":false,"summary":null,"term":"GO:0044347"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of cell wall polysaccharides.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide catabolic process","termid":"GO:0000272"},{"relation_name":"is_a","term_name":"cell wall polysaccharide metabolic process","termid":"GO:0010383"},{"relation_name":"is_a","term_name":"cell wall macromolecule catabolic process","termid":"GO:0016998"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00667":null,"SJAG_01017":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0071554","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"cell wall polysaccharide catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cell wall polysaccharide breakdown","type":"exact"}],"termid":"GO:0044347","terms_by_termid":{"GO:0044347":null}}


id: PR:Q9Y7J4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An actin-related protein 2/3 complex subunit 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12391:SF0","PRO:DNx","OMA:SCHPO03569"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin-related protein 2/3 complex subunit 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1778.08c","secondary_identifiers":["UniProtKB:Q9Y7J4"],"synonyms":[{"name":"Spom972h-ARPC3","type":"exact"},{"name":"arp2/3 complex 21 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"p21-ARC (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9Y7J4"}


id: PR:Q9Y7T2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A WD repeat-containing protein 89 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04472","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized WD repeat-containing protein C63.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC63.06","secondary_identifiers":["UniProtKB:Q9Y7T2"],"synonyms":[{"name":"Spom972h-WDR89","type":"exact"}],"termid":"PR:Q9Y7T2"}


id: GO:0102527
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-amino-4,7-dihydroxycoumarin + 3-dimethylallyl-4-hydroxybenzoate + ATP(4-) = H+ + 8-desmethylnovobiocic acid(1-) + AMP(2-) + diphosphoric acid.","definition_xrefs":["EC:6.3.1.15","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-ammonia (or amide) ligase activity","termid":"GO:0016880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"8-demethylnovobiocate synthase activity","secondary_identifiers":["RHEA:36699","MetaCyc:RXN-14547"],"termid":"GO:0102527"}


id: PBO:0005625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-F (predicted)","termid":"PBO:0005625"}


id: PBO:0088784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA translocase Rdh54","termid":"PBO:0088784"}


id: PBO:0063155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paired box 1","termid":"PBO:0063155"}


id: PBO:0038463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily A member 3","termid":"PBO:0038463"}


id: GO:0044232
data:
  {"annotated_genes":["SJAG_01564","SJAG_04221","SJAG_01168","SJAG_05241","SJAG_01116","SJAG_03416","SJAG_01929","SJAG_02578","SJAG_05184","SJAG_02501","SJAG_02002","SJAG_03170","SJAG_01329","SJAG_02613","SJAG_03710","SJAG_04552","SJAG_01305","SJAG_03247","SJAG_04370","SJAG_03282","SJAG_02028","SJAG_04413"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[113493,93252,99235,119377,78678,120543,106167],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140268"},{"annotations":[117040],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098853"},{"annotations":[81768,118456,76453,71622,71665],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032865"},{"annotations":[108133],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044233"},{"annotations":[103497,76742,91267,109131,111843],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044284"},{"annotations":[117041,108135,108836,78971],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071561"},{"annotations":[91988,96088],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990816"}]},"cv_name":"cellular_component","definition":"A zone of apposition between the membranes of an organelle with another membrane, either another membrane of the same organelle, a membrane of another organelle, or the plasma membrane. Membrane contact sites (MCSs) are structured by bridging complexes. They are specialized for communication, including the efficient traffic of small molecules such as Ca2+ ions and lipids, as well as enzyme-substrate interactions.","definition_xrefs":["PMID:16806880","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"organelle","termid":"GO:0043226"}],"gene_count":22,"genes_by_uniquename":{"SJAG_01116":null,"SJAG_01168":null,"SJAG_01305":null,"SJAG_01329":null,"SJAG_01564":null,"SJAG_01929":null,"SJAG_02002":null,"SJAG_02028":null,"SJAG_02501":null,"SJAG_02578":null,"SJAG_02613":null,"SJAG_03170":null,"SJAG_03247":null,"SJAG_03282":null,"SJAG_03416":null,"SJAG_03710":null,"SJAG_04221":null,"SJAG_04370":null,"SJAG_04413":null,"SJAG_04552":null,"SJAG_05184":null,"SJAG_05241":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"organelle membrane contact site","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"MCS","type":"exact"},{"name":"inter-organelle junction","type":"narrow"},{"name":"interorganelle junction","type":"narrow"}],"termid":"GO:0044232","terms_by_termid":{"GO:0032865":null,"GO:0044233":null,"GO:0044284":null,"GO:0071561":null,"GO:0098853":null,"GO:0140268":null,"GO:1990816":null}}


id: GO:0035151
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Ensuring that an epithelial tube in an open tracheal system is of the correct length and diameter. Tracheal tubes undergo highly regulated tube-size increases during development, expanding up to 40 times their initial size by the end of larval life. Tube size appears to be controlled by regulation of apical membrane expansion and secretion, rather than by changes in cell number, size or shape.","definition_xrefs":["PMID:12930776","PMID:12973360","GOC:mtg_sensu","PMID:10887083"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of tube size","termid":"GO:0035150"},{"relation_name":"is_a","term_name":"regulation of tube architecture, open tracheal system","termid":"GO:0035152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of tube size, open tracheal system","synonyms":[{"name":"regulation of tracheal tube size","type":"exact"}],"termid":"GO:0035151"}


id: PBO:0000001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene characterisation status","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biological role published","termid":"PBO:0000001"}


id: MONDO:0005630
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease characterized by suppurative and granulomatous lesions in the respiratory tract, upper alimentary tract, skin, kidneys, joints, and other tissues. Actinobacillus lignieresii infects cattle and sheep while A. equuli infects horses and pigs.","definition_xrefs":["MESH:D000187"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cattle disease","termid":"MONDO:0024913"},{"relation_name":"is_a","term_name":"horse disease","termid":"MONDO:0024950"},{"relation_name":"is_a","term_name":"sheep disease","termid":"MONDO:0024985"},{"relation_name":"is_a","term_name":"swine disease","termid":"MONDO:0024990"},{"relation_name":"is_a","term_name":"Actinobacillus infectious disease, non-human animal","termid":"MONDO:0700059"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actinobacillosis","secondary_identifiers":["SCTID:16140007","DOID:4974"],"termid":"MONDO:0005630","xrefs":{"Monarch":{"xref_id":"0005630"}}}


id: FYPO:0002605
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H2A phosphorylation occurs to a greater extent than normal at ribosomal DNA during G2 phase of the mitotic cell cycle. All histone H2A phosphorylation may be affected, or phosphorylation of specific sites on histone H2A may be increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H2A phosphorylation at rDNA during vegetative growth","termid":"FYPO:0002604"},{"relation_name":"is_a","term_name":"increased protein phosphorylation during mitotic G2 phase","termid":"FYPO:0004112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0005447","FYPO:0001985","FYPO:0002494","FYPO:0001320"],"is_obsolete":false,"name":"increased histone H2A phosphorylation at rDNA during mitotic G2 phase","synonyms":[{"name":"increased histone H2A phosphorylation at rDNA during mitotic G2 phase during vegetative growth","type":"exact"},{"name":"increased histone H2A phosphorylation at ribosomal DNA during mitotic G2 phase","type":"exact"}],"termid":"FYPO:0002605"}


id: GO:0170034
data:
  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id: MONDO:0032805
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypopigmentation, organomegaly, and delayed myelination and development","secondary_identifiers":["OMIM:618541","UMLS:C5203300","MEDGEN:1684826"],"synonyms":[{"name":"HOD","type":"related"},{"name":"HYPOPIGMENTATION, ORGANOMEGALY, AND DELAYED MYELINATION AND DEVELOPMENT","type":"related"}],"termid":"MONDO:0032805","xrefs":{"Monarch":{"xref_id":"0032805"}}}


id: PBO:0067388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 493, pseudogene","termid":"PBO:0067388"}


id: GO:0061241
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the mesonephric nephron epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. The mesonephric nephron epithelium is a tissue that covers the surface of a nephron in the mesonephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron epithelium development","termid":"GO:0072009"},{"relation_name":"is_a","term_name":"mesonephric epithelium development","termid":"GO:0072163"},{"relation_name":"part_of","term_name":"mesonephric nephron development","termid":"GO:0061215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric nephron epithelium development","termid":"GO:0061241"}


id: GO:0019653
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The anaerobic chemical reactions and pathways resulting in the breakdown of purine nucleobases, yielding energy in the form of ATP.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleobase catabolic process","termid":"GO:0006145"},{"relation_name":"is_a","term_name":"nitrogenous compound fermentation","termid":"GO:0019666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150","GO:0006091"],"is_obsolete":false,"name":"anaerobic purine nucleobase catabolic process","synonyms":[{"name":"anaerobic purine base catabolic process","type":"exact"},{"name":"anaerobic purine base catabolism","type":"exact"},{"name":"anaerobic purine catabolic process","type":"related"},{"name":"purine base fermentation","type":"exact"},{"name":"purine fermentation","type":"related"}],"termid":"GO:0019653"}


id: GO:0160133
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the energy-independent facilitated diffusion of bicarbonate through a transmembrane aqueous pore or channel.","definition_xrefs":["PMID:18400985"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bicarbonate transmembrane transporter activity","termid":"GO:0015106"},{"relation_name":"is_a","term_name":"channel activity","termid":"GO:0015267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"bicarbonate channel activity","synonyms":[{"name":"hydrogencarbonate channel activity","type":"exact"}],"termid":"GO:0160133"}


id: MONDO:0013007
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of combined immunodeficiency due to Calcium release activated Ca2+ (CRAC) channel dysfunction characterized by recurrent infections, congenital myopathy, ectodermal dysplasia and anhydrosis.","definition_xrefs":["Orphanet:317428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"combined immunodeficiency due to CRAC channel dysfunction","termid":"MONDO:0015695"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"combined immunodeficiency due to ORAI1 deficiency","secondary_identifiers":["MESH:C557826","UMLS:C2748568","OMIM:612782","icd11.foundation:677672007","DOID:0111976","MEDGEN:440578","GARD:10524"],"synonyms":[{"name":"CID due to ORAI1 deficiency","type":"exact"},{"name":"IMD9","type":"related"},{"name":"immune dysfunction with T-cell inactivation due to calcium entry defect 1","type":"related"},{"name":"immunodeficiency 9","type":"related"},{"name":"immunodeficiency type 9","type":"exact"}],"termid":"MONDO:0013007","xrefs":{"Monarch":{"xref_id":"0013007"}}}


id: MONDO:0024501
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm with neuroendocrine differentiation that arises from the appendix. It includes well differentiated neuroendocrine tumors (low and intermediate grade) and poorly differentiated neuroendocrine carcinomas (high grade).","definition_xrefs":["NCIT:C60709"],"direct_ancestors":[{"relation_name":"is_a","term_name":"appendiceal neoplasm","termid":"MONDO:0001236"},{"relation_name":"is_a","term_name":"colon neuroendocrine neoplasm","termid":"MONDO:0002882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"appendix neuroendocrine neoplasm","secondary_identifiers":["MEDGEN:361887","UMLS:C1879718"],"synonyms":[{"name":"appendix neuroendocrine neoplasm","type":"exact"},{"name":"neuroendocrine neoplasm of vermiform appendix","type":"exact"},{"name":"vermiform appendix NET","type":"exact"},{"name":"vermiform appendix neuroendocrine neoplasm","type":"exact"},{"name":"vermiform appendix neuroendocrine tumor","type":"exact"},{"name":"vermiform appendix neuroendocrine tumor, well differentiated, low or intermediate grade","type":"exact"},{"name":"vermiform appendix neuroendocrine tumour","type":"exact"}],"termid":"MONDO:0024501","xrefs":{"Monarch":{"xref_id":"0024501"}}}


id: GO:0005171
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an hepatocyte growth factor receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth factor receptor binding","termid":"GO:0070851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"hepatocyte growth factor receptor binding","synonyms":[{"name":"HGF receptor binding","type":"exact"},{"name":"hepatocyte growth factor","type":"narrow"},{"name":"hepatocyte growth factor receptor ligand","type":"narrow"}],"termid":"GO:0005171"}


id: MONDO:0004614
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Form of leukemia characterized by an uncontrolled proliferation of the myeloid lineage and their precursors (myeloid progenitor cells) in the bone marrow and other sites.","definition_xrefs":["MESH:D007951"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chronic leukemia","termid":"MONDO:0001014"},{"relation_name":"is_a","term_name":"monocytic leukemia","termid":"MONDO:0004600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"chronic monocytic leukemia","secondary_identifiers":["UMLS:C0023466","NCIT:C34774","DOID:8593","ICD9:206.1","ICD9:206.11","ICD9:206.10","MEDGEN:9729","SCTID:188745007"],"synonyms":[{"name":"monocytic leukemia, chronic","type":"exact"}],"termid":"MONDO:0004614","xrefs":{"Monarch":{"xref_id":"0004614"}}}


id: FYPO:0007290
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of UDP-glucose 4-epimerase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal UDP-glucose 4-epimerase activity","termid":"FYPO:0007289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0001985","FYPO:0000661","FYPO:0000654"],"is_obsolete":false,"name":"decreased UDP-glucose 4-epimerase activity","synonyms":[{"name":"reduced UDP-glucose 4-epimerase activity","type":"exact"}],"termid":"FYPO:0007290"}


id: GO:0007506
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the gonadal mesoderm over time, from its formation to the mature structure. The gonadal mesoderm is the middle layer of the three primary germ layers of the embryo which will go on to form the gonads of the organism.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"mesoderm development","termid":"GO:0007498"},{"relation_name":"is_a","term_name":"mesenchyme development","termid":"GO:0060485"},{"relation_name":"part_of","term_name":"gonad development","termid":"GO:0008406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"gonadal mesoderm development","termid":"GO:0007506"}


id: GO:0051434
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a BH3 protein domain, present in Bcl-2 family members. The BH3 domain is a potent death domain and has an important role in protein-protein interactions and in cell death.","definition_xrefs":["PMID:11048732","PMID:12133724","Prosite:PS01259","PMID:9020082","PMID:9704409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"BH domain binding","termid":"GO:0051400"},{"relation_name":"is_a","term_name":"death domain binding","termid":"GO:0070513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"BH3 domain binding","termid":"GO:0051434"}


id: GO:0007521
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell fate determination process in which a cell becomes capable of differentiating autonomously into a muscle cell regardless of its environment; upon determination, the cell fate cannot be reversed.","definition_xrefs":["GOC:go_curators","CL:0000187"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate determination","termid":"GO:0001709"},{"relation_name":"part_of","term_name":"muscle cell fate commitment","termid":"GO:0042693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"muscle cell fate determination","termid":"GO:0007521"}


id: PBO:0052038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Jun proto-oncogene, AP-1 transcription factor subunit","termid":"PBO:0052038"}


id: GO:0006418
data:
  {"annotated_genes":["SJAG_02977"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96442],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070127"}]},"cv_name":"biological_process","definition":"The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis.","definition_xrefs":["GOC:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA aminoacylation","termid":"GO:0043039"},{"relation_name":"part_of","term_name":"translation","termid":"GO:0006412"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02977":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006520","GO:0010467","GO:0006399","GO:0008150"],"is_obsolete":false,"name":"tRNA aminoacylation for protein translation","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:TRNA-CHARGING-PWY","Reactome:R-HSA-379724"],"synonyms":[{"name":"tRNA charging","type":"narrow"}],"termid":"GO:0006418","terms_by_termid":{"GO:0070127":null}}


id: PBO:0063092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAQR9 antisense RNA 1","termid":"PBO:0063092"}


id: GO:0103061
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP(4-) + H2O + a trans-methoxy-C60-meroacyl-[acp] = diphosphoric acid + a trans-methoxy-meroacyl-adenylate + a holo-[acyl-carrier protein].","definition_xrefs":["PMID:15042094","GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete trans-methoxy-C60-meroacyl-AMP ligase activity (obsolete GO:0103061)","termid":"GO:0103061"}


id: PBO:0041766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calpain 6","termid":"PBO:0041766"}


id: PBO:0003390
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.5.1.21","termid":"PBO:0003390"}


id: MONDO:0015856
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"breast disorder","termid":"MONDO:0002657"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndromic breast hypoplasia/aplasia","secondary_identifiers":["MEDGEN:1842220","GARD:20196","UMLS:C5680482","Orphanet:180193"],"termid":"MONDO:0015856","xrefs":{"Monarch":{"xref_id":"0015856"}}}


id: MONDO:0008399
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any sarcoidosis in which the cause of the disease is a mutation in the HLA-DRB1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sarcoidosis, susceptibility to, 1","secondary_identifiers":["UMLS:C2697310","ICD9:135","MEDGEN:394568","OMIM:181000"],"synonyms":[{"name":"Boeck sarcoid","type":"related"},{"name":"HLA-DRB1 sarcoidosis","type":"exact"},{"name":"SS1","type":"related"},{"name":"sarcoidosis","type":"broad"},{"name":"sarcoidosis caused by mutation in HLA-DRB1","type":"exact"},{"name":"sarcoidosis, susceptibility to, 1","type":"exact"},{"name":"sarcoidosis, susceptibility to, type 1","type":"exact"},{"name":"susceptibility to sarcoidosis 1","type":"related"}],"termid":"MONDO:0008399","xrefs":{"Monarch":{"xref_id":"0008399"}}}


id: PBO:0075531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"speedy/RINGO cell cycle regulator family member E11","termid":"PBO:0075531"}


id: GO:0097693
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Eye-like subcellular structure found in dinoflagellates (a large group of single-celled eukaryotes). Consists of subcellular analogues to a cornea, lens, iris, and retina. Ocelloids are built from pre-existing organelles, including a cornea-like layer made of mitochondria and a retinal body made of anastomosing plastids.","definition_xrefs":["GOC:ar","PMID:26131935"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"ocelloid","termid":"GO:0097693"}


id: GO:0001832
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An increase in size of a blastocyst due to expansion of the blastocoelic cavity cell shape changes and cell proliferation.","definition_xrefs":["GOC:dph","ISBN:0198542771","ISBN:0124020607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental growth","termid":"GO:0048589"},{"relation_name":"part_of","term_name":"blastocyst development","termid":"GO:0001824"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"blastocyst growth","synonyms":[{"name":"blastula growth","type":"related"}],"termid":"GO:0001832"}


id: GO:0042542
data:
  {"annotated_genes":["SJAG_01199","SJAG_02515","SJAG_04823","SJAG_04953","SJAG_00141","SJAG_01216"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[119216,110654,106852,96979,120156,101789],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0061692"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to reactive oxygen species","termid":"GO:0000302"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00141":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_02515":null,"SJAG_04823":null,"SJAG_04953":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to hydrogen peroxide","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0042542","terms_by_termid":{"GO:0061692":null}}


id: SO:0000147
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcript_region","termid":"SO:0000833"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exon","secondary_identifiers":["http://en.wikipedia.org/wiki/Exon"],"synonyms":[{"name":"INSDC_feature:exon","type":"exact"}],"termid":"SO:0000147"}


id: GO:0032033
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a light chain of a myosin II complex.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myosin light chain binding","termid":"GO:0032027"},{"relation_name":"is_a","term_name":"myosin II binding","termid":"GO:0045159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0008092","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"myosin II light chain binding","termid":"GO:0032033"}


id: GO:0052084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a symbiont modulates the frequency, rate or extent of the ethylene-mediated defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host defense response","termid":"GO:0052031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated modulation of host ethylene-mediated defense response","secondary_identifiers":["GO:0052077","GO:0052279","GO:0052441"],"synonyms":[{"name":"modulation by organism of defense-related ethylene-mediated signal transduction pathway in other organism involved in symbiotic interaction","type":"broad"},{"name":"modulation by organism of ethylene-mediated defense response of other organism involved in symbiotic interaction","type":"broad"},{"name":"modulation by symbiont of defense-related host ethylene-mediated signal transduction pathway","type":"broad"},{"name":"modulation by symbiont of host ethylene-mediated defense response","type":"exact"}],"termid":"GO:0052084"}


id: MONDO:0017909
data:
  {"annotated_genes":["SJAG_01351"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87516],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009947"},{"annotations":[87953],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009284"}]},"cv_name":"mondo","definition":"Glutathione synthetase deficiency is characterized by hemolytic anemia, associated with metabolic acidosis and 5-oxoprolinuria in moderate forms, and with progressive neurological symptoms and recurrent bacterial infections in the most severe forms.","definition_xrefs":["Orphanet:32"],"direct_ancestors":[{"relation_name":"is_a","term_name":"defective phagocytic cell engulfment","termid":"MONDO:0024626"},{"relation_name":"is_a","term_name":"inherited glutathione metabolism disease","termid":"MONDO:0040566"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01351":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0019241"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0019241","MONDO:0005046","MONDO:0005066"],"is_obsolete":false,"name":"inherited glutathione synthetase deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NCIT:C128193","GARD:10047","MESH:C536835","DOID:0080699","SCTID:234589002"],"synonyms":[{"name":"5-oxoprolinuria","type":"exact"},{"name":"GSSD","type":"exact"},{"name":"glutathione synthetase deficiency","type":"exact"},{"name":"inborn error of glutathione synthase activity","type":"exact"},{"name":"inborn glutathione synthase activity disorder","type":"exact"},{"name":"inherited glutathione synthetase deficiency","type":"exact"},{"name":"oxoprolinase deficiency","type":"related"},{"name":"pyroglutamic aciduria","type":"exact"},{"name":"pyroglutamicaciduria","type":"exact"},{"name":"rare inborn error of glutathione synthase activity","type":"exact"}],"termid":"MONDO:0017909","terms_by_termid":{"MONDO:0009284":null,"MONDO:0009947":null},"xrefs":{"Monarch":{"xref_id":"0017909"}}}


id: GO:0061228
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the mesonephric nephron are generated and organized. A mesonephric nephron is the functional unit of the mesonephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron morphogenesis","termid":"GO:0072028"},{"relation_name":"part_of","term_name":"mesonephros morphogenesis","termid":"GO:0061206"},{"relation_name":"part_of","term_name":"mesonephric nephron development","termid":"GO:0061215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric nephron morphogenesis","termid":"GO:0061228"}


id: PBO:0120140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of ribosome-associated quality control trigger complex (RQT); contains ATPase activity required for subunit dissociation of non-functional 80S ribosomes containing polyubiquitinated Rps3p, leading to Xrn1-dependent degradation of the non-functional 18S rRNA; blocks translation of non-poly(A) mRNAs; required to repress the propagation of dsRNA viruses; RNA helicase-family protein related to Ski2p; human homolog is ASCC3","termid":"PBO:0120140"}


id: GO:0002010
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the molecular signal from the arterial baroreceptors is relayed to the vasomotor center causing it to signal increase arterial pressure.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system process involved in regulation of systemic arterial blood pressure","termid":"GO:0001976"},{"relation_name":"part_of","term_name":"baroreceptor response to decreased systemic arterial blood pressure","termid":"GO:0001982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"excitation of vasomotor center by baroreceptor signaling","synonyms":[{"name":"excitation of vasomotor center by baroreceptor signalling","type":"exact"}],"termid":"GO:0002010"}


id: GO:0035647
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: a 3-oxo-delta-4,5-steroid + NADPH + H+ = a 5-beta-3-oxo-steroid + NADP+.","definition_xrefs":["PMID:19166903","GOC:kad","MetaCyc:RXN-9726"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-oxo-delta(4,5)-steroid 5-beta-reductase activity (obsolete GO:0035647)","synonyms":[{"name":"3-oxo-delta4,5-steroid 5beta-reductase","type":"exact"}],"termid":"GO:0035647"}


id: MONDO:0044325
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Fanconi anemia","termid":"MONDO:0019391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0021190"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005570","MONDO:0005046","MONDO:0021190","MONDO:0002280"],"is_obsolete":false,"name":"Fanconi anemia, complementation group W","secondary_identifiers":["MEDGEN:1621245","OMIM:617784","UMLS:C4521564","DOID:0060978"],"synonyms":[{"name":"FANCW","type":"related"},{"name":"Fanconi anemia, complementation group W","type":"exact"}],"termid":"MONDO:0044325","xrefs":{"Monarch":{"xref_id":"0044325"}}}


id: GO:0042689
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of crystal cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hemocyte differentiation","termid":"GO:0045610"},{"relation_name":"regulates","term_name":"crystal cell differentiation","termid":"GO:0042688"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of crystal cell differentiation","termid":"GO:0042689"}


id: GO:0061354
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors including C-Jun N-terminal kinase (JNK) to modulate cytoskeletal elements and control cell polarity that contributes to the shaping of the pericardium.","definition_xrefs":["GOC:mtg_heart","PMID:19056682","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete planar cell polarity pathway involved in pericardium morphogenesis (obsolete GO:0061354)","termid":"GO:0061354"}


id: MONDO:1012656
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any disorder of sexual differentiation that occurs in rabbits due to a mutation in the SRY gene created by genetic engineering or gene editing.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"difference of sexual differentiation, non-human animal","termid":"MONDO:0700105"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XY sex reversal, SRY-related, rabbit","secondary_identifiers":["OMIA:001230-9986"],"termid":"MONDO:1012656","xrefs":{"Monarch":{"xref_id":"1012656"}}}


id: PBO:0013029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor Cwf16","termid":"PBO:0013029"}


id: MONDO:1011996
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"vision disorder, non-human animal","termid":"MONDO:1011367"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ocular melanosis, non-human animal","secondary_identifiers":["OMIA:001804"],"termid":"MONDO:1011996","xrefs":{"Monarch":{"xref_id":"1011996"}}}


id: PBO:0075645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sprouty RTK signaling antagonist 4","termid":"PBO:0075645"}


id: MONDO:0012521
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Herpes simplex virus encephalitis (HSE) is caused by the infection of the central nervous system by Herpes simplex virus (HSV) that could have a devastating clinical course and a potentially fatal outcome particularly with delay or lack of treatment. HSV often involves the frontal and temporal lobes, usually asymmetrically, resulting in personality changes, cognitive impairment, aphasia, seizures, and focal weakness.","definition_xrefs":["Orphanet:1930"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete infectious disease with epilepsy (obsolete MONDO:0015659)","termid":"MONDO:0015659"},{"relation_name":"excluded_subClassOf","term_name":"obsolete hereditary predisposition to infections (obsolete MONDO:0015979)","termid":"MONDO:0015979"},{"relation_name":"excluded_subClassOf","term_name":"obsolete infectious disease with dementia (obsolete MONDO:0020141)","termid":"MONDO:0020141"},{"relation_name":"is_a","term_name":"herpes simplex infectious disease","termid":"MONDO:0004609"},{"relation_name":"is_a","term_name":"viral encephalitis","termid":"MONDO:0006009"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"herpes simplex encephalitis","secondary_identifiers":["MEDGEN:75794","NCIT:C84762","UMLS:C0276226","ICD10EXP:B00.4+","GARD:6649","NANDO:2200772","ICD10EXP:G05.1*","icd11.foundation:320069644","MESH:D020803","NORD:1087"],"synonyms":[{"name":"Encephalitis, Herpes Simplex","type":"exact"},{"name":"HSE","type":"exact"},{"name":"HSV encephalitis","type":"exact"},{"name":"HSVE","type":"exact"},{"name":"Herpes simplex meningo-encephalitis","type":"exact"},{"name":"Herpes simplex neuroinvasion","type":"exact"},{"name":"Herpes simplex virus encephalitis","type":"related"},{"name":"Simplexvirus caused infectious encephalitis","type":"exact"},{"name":"Simplexvirus infectious encephalitis","type":"exact"},{"name":"herpetic encephalitis","type":"exact"}],"termid":"MONDO:0012521","xrefs":{"Monarch":{"xref_id":"0012521"}}}


id: MONDO:0021631
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A astrocytoma (excluding glioblastoma) that involves the brain.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"astrocytoma (excluding glioblastoma)","termid":"MONDO:0019781"},{"relation_name":"is_a","term_name":"primary brain neoplasm","termid":"MONDO:0021632"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brain astrocytoma","secondary_identifiers":["SCTID:254938000","NCIT:C60780","MEDGEN:811330","UMLS:C3695127"],"synonyms":[{"name":"astrocytoma (excluding glioblastoma) of brain","type":"exact"},{"name":"brain astrocytoma","type":"exact"},{"name":"brain astrocytoma (excluding glioblastoma)","type":"exact"}],"termid":"MONDO:0021631","xrefs":{"Monarch":{"xref_id":"0021631"}}}


id: PR:Q9USP5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GPI-anchor transamidase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12000:SF1","PRO:DNx","OMA:SCHPO04689"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI-anchor transamidase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC11E10.02c","secondary_identifiers":["UniProtKB:Q9USP5"],"synonyms":[{"name":"GPI transamidase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PIGK","type":"exact"}],"termid":"PR:Q9USP5"}


id: GO:0031573
data:
  {"annotated_genes":["SJAG_01044","SJAG_00364","SJAG_00640","SJAG_02563","SJAG_01677","SJAG_00429","SJAG_03160","SJAG_03898","SJAG_04287","SJAG_00327","SJAG_00623","SJAG_03026","SJAG_04332","SJAG_05373","SJAG_04671","SJAG_03048","SJAG_01708","SJAG_01605","SJAG_02771"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75590,76024,80629,81003,81090,90893,90939,92215,93204,96317,97794,101143,102647,104157,108431,109478,113562,113868,117902],"is_not":false,"summary":null,"term":"GO:0031573"}]},"cv_name":"biological_process","definition":"A mitotic cell cycle checkpoint that slows DNA synthesis in response to DNA damage by the prevention of new origin firing and the stabilization of slow replication fork progression.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic DNA damage checkpoint signaling","termid":"GO:0044773"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00327":null,"SJAG_00364":null,"SJAG_00429":null,"SJAG_00623":null,"SJAG_00640":null,"SJAG_01044":null,"SJAG_01605":null,"SJAG_01677":null,"SJAG_01708":null,"SJAG_02563":null,"SJAG_02771":null,"SJAG_03026":null,"SJAG_03048":null,"SJAG_03160":null,"SJAG_03898":null,"SJAG_04287":null,"SJAG_04332":null,"SJAG_04671":null,"SJAG_05373":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0023052"],"is_obsolete":false,"name":"mitotic intra-S DNA damage checkpoint signaling","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0072428"],"synonyms":[{"name":"S-phase checkpoint","type":"broad"},{"name":"intra-S DNA damage checkpoint","type":"exact"},{"name":"mitotic intra-S DNA damage checkpoint","type":"exact"},{"name":"signal transduction involved in intra-S DNA damage checkpoint","type":"exact"}],"termid":"GO:0031573","terms_by_termid":{"GO:0031573":null}}


id: GO:0036006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a macrophage colony-stimulating factor stimulus.","definition_xrefs":["GOC:yaf","PMID:14687666"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to macrophage colony-stimulating factor","termid":"GO:0036005"},{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to macrophage colony-stimulating factor stimulus","synonyms":[{"name":"cellular response to M-CSF stimulus","type":"exact"},{"name":"cellular response to macrophage colony-stimulating factor","type":"exact"}],"termid":"GO:0036006"}


id: MONDO:0020637
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited susceptibility to mycobacterial diseases","termid":"MONDO:0019146"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mendelian susceptibility to mycobacterial diseases due to a partial deficiency","termid":"MONDO:0020637","xrefs":{"Monarch":{"xref_id":"0020637"}}}


id: PATO:0001927
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A fluorescence which is lower than normal.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"fluorescent","termid":"PATO:0001290"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased fluorescence","synonyms":[{"name":"low fluorescence","type":"exact"}],"termid":"PATO:0001927"}


id: GO:0033832
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha,alpha-trehalose + phosphate = alpha-D-glucose + alpha-D-glucose 1-phosphate.","definition_xrefs":["RHEA:16257"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosyltransferase activity","termid":"GO:0046527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"alpha,alpha-trehalose phosphorylase (configuration-retaining) activity","secondary_identifiers":["MetaCyc:RXN-4441","EC:2.4.1.231"],"synonyms":[{"name":"alpha,alpha-trehalose:phosphate alpha-D-glucosyltransferase activity","type":"related"},{"name":"trehalose phosphorylase activity","type":"broad"}],"termid":"GO:0033832"}


id: MONDO:0033635
data:
  {"annotated_genes":["SJAG_03173"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87467],"is_not":false,"summary":null,"term":"MONDO:0033635"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex IV deficiency, nuclear-type","termid":"MONDO:0033885"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03173":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial complex 4 deficiency, nuclear type 3","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:16404","UMLS:C5436682","OMIM:619046","MEDGEN:1764816","DOID:0070492"],"synonyms":[{"name":"MC4DN3","type":"exact"},{"name":"mitochondrial complex IV deficiency, nuclear type 3","type":"exact"}],"termid":"MONDO:0033635","terms_by_termid":{"MONDO:0033635":null},"xrefs":{"Monarch":{"xref_id":"0033635"}}}


id: PBO:0017013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial phosphatidate cytidylyltransferase Tam41 (predicted)","termid":"PBO:0017013"}


id: MONDO:0012286
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked myopathy with excessive autophagy","termid":"MONDO:0010684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"myopathy, autophagic vacuolar, infantile-onset","secondary_identifiers":["OMIM:609500","UMLS:C2931230","MEDGEN:419364"],"synonyms":[{"name":"myopathy, autophagic vacuolar, infantile-onset","type":"exact"}],"termid":"MONDO:0012286","xrefs":{"Monarch":{"xref_id":"0012286"}}}


id: PBO:0049289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase alpha 8, pseudogene","termid":"PBO:0049289"}


id: PBO:0073223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semaphorin 6D","termid":"PBO:0073223"}


id: PATO:0000134
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000134 absolute_angle (obsolete PATO:0000134)","termid":"PATO:0000134"}


id: GO:0018391
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The ATP-dependent addition of a tyrosine residue to a glutamic acid residue at the C-terminus of a protein.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete C-terminal peptidyl-glutamic acid tyrosinylation (obsolete GO:0018391)","termid":"GO:0018391"}


id: PBO:0075945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stromal antigen 3","termid":"PBO:0075945"}


id: PR:Q7LL04
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC1494.01 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q7LL04"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0676 protein C1494.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1494.01","synonyms":[{"name":"Spom972h-SPCC1494.01","type":"exact"}],"termid":"PR:Q7LL04"}


id: PBO:0052180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium two pore domain channel subfamily K member 12","termid":"PBO:0052180"}


id: MONDO:0018531
data:
  {"annotated_genes":["SJAG_02049"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88387],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007256"}]},"cv_name":"mondo","definition":"A carcinoma that arises from the hepatocytes or intrahepatic bile ducts. The main subtypes are hepatocellular carcinoma (hepatoma) and cholangiocarcinoma.","definition_xrefs":["NCIT:C7927"],"direct_ancestors":[{"relation_name":"is_a","term_name":"liver cancer","termid":"MONDO:0002691"},{"relation_name":"is_a","term_name":"digestive system carcinoma","termid":"MONDO:0006181"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02049":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"carcinoma of liver and intrahepatic biliary tract","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0279000","MEDGEN:78921","Orphanet:424936","GARD:21786","ONCOTREE:HCCIHCH"],"synonyms":[{"name":"cancer of liver","type":"broad"},{"name":"cancer of liver and intrahepatic biliary tract","type":"broad"},{"name":"cancer of the liver","type":"broad"},{"name":"cancer of the liver and intrahepatic biliary tract","type":"broad"},{"name":"carcinoma of liver","type":"broad"},{"name":"carcinoma of liver and IBT","type":"exact"},{"name":"hepatic cancer","type":"broad"},{"name":"hepatocellular carcinoma plus intrahepatic cholangiocarcinoma","type":"related"},{"name":"liver and intrahepatic bile duct cancer","type":"broad"},{"name":"liver and intrahepatic bile duct carcinoma","type":"exact"},{"name":"liver and intrahepatic biliary tract cancer","type":"exact"},{"name":"liver and intrahepatic biliary tract carcinoma","type":"exact"},{"name":"liver cancer","type":"broad"},{"name":"liver carcinoma","type":"broad"},{"name":"liver/hepatobiliary cancer","type":"broad"},{"name":"primary liver carcinoma","type":"exact"}],"termid":"MONDO:0018531","terms_by_termid":{"MONDO:0007256":null},"xrefs":{"Monarch":{"xref_id":"0018531"}}}


id: MONDO:0007531
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"electroencephalographic peculiarity: fronto-precentral beta wave groups","secondary_identifiers":["MEDGEN:343646","OMIM:130300","UMLS:C1851756"],"synonyms":[{"name":"electroencephalographic peculiarity: fronto-precentral beta wave groups","type":"exact"}],"termid":"MONDO:0007531","xrefs":{"Monarch":{"xref_id":"0007531"}}}


id: GO:0008253
data:
  {"annotated_genes":["SJAG_03096","SJAG_02593","SJAG_02582","SJAG_02580","SJAG_01055","SJAG_03276","SJAG_02959"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71589,92086,92317,96132,115549,115550,119029],"is_not":false,"summary":null,"term":"GO:0008253"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate.","definition_xrefs":["EC:3.1.3.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotidase activity","termid":"GO:0008252"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01055":null,"SJAG_02580":null,"SJAG_02582":null,"SJAG_02593":null,"SJAG_02959":null,"SJAG_03096":null,"SJAG_03276":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"5'-nucleotidase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-109514","Reactome:R-HSA-109387","Reactome:R-HSA-109380","Reactome:R-HSA-109278","Reactome:R-HSA-109291","Reactome:R-HSA-109470","Reactome:R-HSA-109415","Reactome:R-HSA-109480","Reactome:R-HSA-9755078","Reactome:R-HSA-109449","MetaCyc:5-NUCLEOTID-RXN","Reactome:R-HSA-8940074","Reactome:R-HSA-8940070","Reactome:R-HSA-74248","Reactome:R-HSA-5694126","RHEA:12484"],"synonyms":[{"name":"5' nucleotidase activity","type":"exact"},{"name":"5'-AMP nucleotidase","type":"narrow"},{"name":"5'-AMPase","type":"narrow"},{"name":"5'-adenylic phosphatase","type":"narrow"},{"name":"5'-mononucleotidase activity","type":"related"},{"name":"5'-ribonucleotide phosphohydrolase activity","type":"related"},{"name":"AMP phosphatase","type":"narrow"},{"name":"AMP phosphohydrolase","type":"narrow"},{"name":"AMPase","type":"narrow"},{"name":"UMPase","type":"narrow"},{"name":"adenosine 5'-phosphatase","type":"narrow"},{"name":"adenosine monophosphatase","type":"narrow"},{"name":"snake venom 5'-nucleotidase","type":"narrow"},{"name":"thimidine monophosphate nucleotidase","type":"narrow"},{"name":"uridine 5'-nucleotidase","type":"narrow"}],"termid":"GO:0008253","terms_by_termid":{"GO:0008253":null}}


id: PBO:0025429
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trichothiodystrophy","termid":"PBO:0025429"}


id: MONDO:0044350
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial primary hyperparathyroidism","termid":"MONDO:0016365"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperparathyroidism, primary, caused by water clear cell hyperplasia","secondary_identifiers":["MEDGEN:325036","OMIM:600166","UMLS:C1838501","GARD:18254","MESH:C563982"],"synonyms":[{"name":"hyperparathyroidism, primary, caused by water clear cell hyperplasia","type":"exact"}],"termid":"MONDO:0044350","xrefs":{"Monarch":{"xref_id":"0044350"}}}


id: PBO:0070744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10 like","termid":"PBO:0070744"}


id: PBO:0044726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD/H-box helicase 11 like 15 (pseudogene)","termid":"PBO:0044726"}


id: PBO:0041786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CAPSL divergent transcript","termid":"PBO:0041786"}


id: PBO:0091215
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pdc2-Repressed lncRNA","termid":"PBO:0091215"}


id: GO:0043812
data:
  {"annotated_genes":["SJAG_00880","SJAG_02706"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75534,79870],"is_not":false,"summary":null,"term":"GO:0043812"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol 4-phosphate) + H2O = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol) + phosphate.","definition_xrefs":["PMID:10224048","RHEA:55652"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol phosphate 4-phosphatase activity","termid":"GO:0034596"},{"relation_name":"is_a","term_name":"phosphatidylinositol monophosphate phosphatase activity","termid":"GO:0052744"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00880":null,"SJAG_02706":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016788","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"phosphatidylinositol-4-phosphate phosphatase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:RXN-10961"],"synonyms":[{"name":"phosphatidylinositol 4-phosphate phosphatase activity","type":"exact"}],"termid":"GO:0043812","terms_by_termid":{"GO:0043812":null}}


id: MONDO:0017329
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial vesicoureteral reflux is a rare, non-syndromic urogenital tract malformation characterized by the familial occurrence of retrograde flow of urine from the bladder into the ureter and sometimes the kidneys. Patients may be asymptomatic or may present with recurrent, sometimes febrile, urinary tract infections that, in case of acute pyelonephritis, may lead to serious complications (renal scarring, hypertension, renal failure). Spontaneous resolution of the disorder is possible.","definition_xrefs":["Orphanet:289365"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"vesicoureteral reflux","termid":"MONDO:0006007"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial vesicoureteral reflux","secondary_identifiers":["UMLS:C4706552","MEDGEN:1637583","GARD:17323","SCTID:763716008","OMIMPS:193000"],"synonyms":[{"name":"familial VUR","type":"exact"},{"name":"hereditary vesicoureteral reflux (disease)","type":"exact"}],"termid":"MONDO:0017329","xrefs":{"Monarch":{"xref_id":"0017329"}}}


id: GO:0060878
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenetic process in which an epithelial sheet bends along a linear axis and gives rise to a pouch that will form a semicircular canal.","definition_xrefs":["GOC:dph","GOC:tb","GOC:sdb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"is_a","term_name":"morphogenesis of an epithelial fold","termid":"GO:0060571"},{"relation_name":"part_of","term_name":"semicircular canal formation","termid":"GO:0060876"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pouch outgrowth involved in semicircular canal formation","termid":"GO:0060878"}


id: PBO:0087752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the transmembrane ring of the nuclear pore complex (NPC); contributes to nucleocytoplasmic transport, NPC biogenesis and spindle pole body duplication; homologous to human NDC1","termid":"PBO:0087752"}


id: GO:0032190
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to acrosin, a protein that is found in the acrosomes of sperm and possesses protease and carbohydrate binding activities.","definition_xrefs":["PMID:12398221","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme binding","termid":"GO:0019899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"acrosin binding","secondary_identifiers":["GO:0032192","GO:0032191"],"synonyms":[{"name":"acrosin heavy chain binding","type":"narrow"},{"name":"acrosin light chain binding","type":"narrow"}],"termid":"GO:0032190"}


id: PBO:0108693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RabGAP Tbc13","termid":"PBO:0108693"}


id: GO:0030684
data:
  {"annotated_genes":["SJAG_04424","SJAG_04979","SJAG_00253","SJAG_03341","SJAG_04395","SJAG_04069","SJAG_02952","SJAG_03156","SJAG_04033","SJAG_00629","SJAG_04339","SJAG_02287","SJAG_01877","SJAG_02894","SJAG_05187","SJAG_03364","SJAG_01494","SJAG_00838","SJAG_04492","SJAG_02300","SJAG_01608","SJAG_01764","SJAG_03077","SJAG_01454","SJAG_00384","SJAG_00949","SJAG_04346","SJAG_02046","SJAG_00772","SJAG_00744","SJAG_01799","SJAG_01087","SJAG_02759","SJAG_01721","SJAG_03458","SJAG_03197","SJAG_02890","SJAG_04160","SJAG_02372","SJAG_00537","SJAG_01618","SJAG_02840","SJAG_03028","SJAG_03919","SJAG_03569","SJAG_01551","SJAG_03654","SJAG_04491","SJAG_05018","SJAG_00572","SJAG_06612","SJAG_01811","SJAG_00748","SJAG_04992","SJAG_00311","SJAG_00538","SJAG_01272","SJAG_00271","SJAG_03413","SJAG_02508","SJAG_03666","SJAG_03326","SJAG_04478","SJAG_03905","SJAG_02250","SJAG_02597","SJAG_02830","SJAG_00657","SJAG_04475","SJAG_03697","SJAG_05186","SJAG_02427","SJAG_01839","SJAG_00245","SJAG_02350","SJAG_02121","SJAG_00142","SJAG_03410","SJAG_00765","SJAG_01821","SJAG_03423","SJAG_03617","SJAG_02283","SJAG_05216","SJAG_04611","SJAG_01907","SJAG_03080","SJAG_02081","SJAG_01366","SJAG_00294","SJAG_01565","SJAG_04330","SJAG_01322","SJAG_01202","SJAG_02436","SJAG_01606","SJAG_03335","SJAG_01588","SJAG_01364","SJAG_00722","SJAG_01005","SJAG_02377","SJAG_02608","SJAG_03012","SJAG_00689","SJAG_01420","SJAG_02644","SJAG_02802","SJAG_01580","SJAG_00155","SJAG_03719","SJAG_03931","SJAG_01115","SJAG_01169","SJAG_03133","SJAG_04908","SJAG_02024","SJAG_00945","SJAG_03159","SJAG_02025","SJAG_03425","SJAG_03466","SJAG_00943","SJAG_04304","SJAG_00897","SJAG_04897","SJAG_01338","SJAG_04534","SJAG_04004","SJAG_00940","SJAG_02530","SJAG_04414","SJAG_02681","SJAG_00749","SJAG_04669","SJAG_02546","SJAG_01194","SJAG_00220","SJAG_01676","SJAG_03539","SJAG_02702","SJAG_02755","SJAG_04919","SJAG_00965","SJAG_03252","SJAG_03846","SJAG_04940","SJAG_00921","SJAG_02611","SJAG_00879","SJAG_02207","SJAG_00882","SJAG_00166","SJAG_04224","SJAG_03383","SJAG_01275","SJAG_02662","SJAG_04847","SJAG_01853"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[57039,58856,59559,60052,62622,62934,64498,64539,66740,68779,69703,89845,91718,92822,92823,94158,97101,98951,98952,99991,99992,100948,100949,102215,102216,102381,102696,103695,103696,104261,104262,104704,105899,105900,107457,107458,109250,109685,109809,110827,112939,112940,113273,113973,114221,114222,115334,116365,116366,117156,117616,117617,117999,118728,118729,119279,119280,119446,119447,119622,119808,120136,120137,120661,120662,120831,120832],"is_not":false,"summary":null,"term":"GO:0030684"},{"annotations":[73590,78029,72475,75459,72031,117558,118584,79656,108840,62412,114902,61066,78244,67396,101829,94385],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030686"},{"annotations":[77673,80068,81905],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034457"},{"annotations":[81861,74553,99661],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030690"},{"annotations":[114271,74554,81862],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030691"},{"annotations":[74500,80351],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030692"},{"annotations":[75366,76526,77892],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070545"},{"annotations":[94983,101243,73331,79193,96616,76525,62155,77757,76903,73920,81580,78432,72926,79990,100959,105300,80422,99750,73976,81060,118066,77891],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030687"},{"annotations":[114826,76304,67397,80908,72032,108775,71542,73018,112887,81023,71005],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030688"},{"annotations":[75282,73080,73401,81452,78562],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034388"},{"annotations":[61597,80868,77033,74543,76148,81451,80949,77672,73271,73079,81393,80352,68077,78750,77118,72538,68156,81904,79181,78090,72283,103206,115378,77303,112021,72465,65178,78561,80256,75281,80067,73400,79772,78245,74969,82087,93000,112394,91008,74590,119255,89512,74501,78030],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032040"},{"annotations":[80258,76276,79804,77707,95512],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034456"}]},"cv_name":"cellular_component","definition":"Any complex of pre-rRNAs, ribosomal proteins, and associated proteins formed during ribosome biogenesis.","definition_xrefs":["PMID:10567516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoprotein 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id: PR:000027897
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pap1 gene or a 1:1 ortholog thereof.","definition_xrefs":["PMID:15165244","PMID:1899230","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AP-1-like transcription factor","synonyms":[{"name":"CAF3","type":"related"},{"name":"Caffeine resistance protein 3","type":"exact"},{"name":"pap1","type":"exact"}],"termid":"PR:000027897"}


id: PBO:0052031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Jrk helix-turn-helix protein","termid":"PBO:0052031"}


id: PBO:0068367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 150","termid":"PBO:0068367"}


id: GO:0022620
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a microgametophyte. The microgametophyte vegetative cell gives rise to the pollen tube.","definition_xrefs":["GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"microgametogenesis","termid":"GO:0055046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"microgametophyte vegetative cell differentiation","synonyms":[{"name":"tube cell differentiation","type":"related"},{"name":"vegetative cell differentiation","type":"related"}],"termid":"GO:0022620"}


id: GO:0042925
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the directed movement of benzoate, the anion of benzoic acid (benzenecarboxylic acid) from one side of a membrane to the other.","definition_xrefs":["ISBN:0721662544","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic transmembrane transporter activity","termid":"GO:0042910"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transporter activity","termid":"GO:0046943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"benzoate transmembrane transporter activity","synonyms":[{"name":"benzoate transporter activity","type":"related"}],"termid":"GO:0042925"}


id: FYPO:0002529
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleoplasm is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to nucleus during vegetative growth","termid":"FYPO:0001129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"abnormal protein localization to nucleoplasm","synonyms":[{"name":"abnormal protein localisation to nucleoplasm","type":"exact"},{"name":"abnormal protein localization to nucleoplasm during mitotic cell cycle","type":"related"},{"name":"abnormal protein localization to nucleoplasm during vegetative growth","type":"exact"}],"termid":"FYPO:0002529"}


id: GO:0016704
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A grouping term for oxidoreductases acting on single donors with incorporation of molecular oxygen that cannot be more accurated categorized.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, miscellaneous (obsolete GO:0016704)","synonyms":[{"name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, miscellaneous","type":"exact"}],"termid":"GO:0016704"}


id: PBO:0043164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CIDEC pseudogene 1","termid":"PBO:0043164"}


id: GO:0034920
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: pyrene + 2 H+ + 2 e- + O2 = cis-4,5-dihydroxy-4,5-dihydropyrene.","definition_xrefs":["UM-BBD_reactionID:r0934"],"gene_count":0,"genotype_count":0,"name":"obsolete pyrene dioxygenase activity (obsolete GO:0034920)","termid":"GO:0034920"}


id: PBO:0012061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial metallopeptidase predicted to be involved in tRNA threonylcarbamoyladenosine modification Pgp1","termid":"PBO:0012061"}


id: PBO:0000255
data:
  {"annotation_feature_type":"gene","cv_name":"m_f_g","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperone","termid":"PBO:0000255"}


id: MOD:00893
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Natural or modified residues with a mass of 128.0-128.1 Da.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"residues isobaric at a resolution below 0.1 Da","termid":"MOD:00616"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"residues isobaric at 128.0-128.1","termid":"MOD:00893"}


id: PBO:0027792
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_phosphatase_activity","termid":"PBO:0027792"}


id: MONDO:0013462
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fucosyltransferase 6 deficiency","secondary_identifiers":["UMLS:C3151219","MEDGEN:462569","OMIM:613852"],"synonyms":[{"name":"fucosyltransferase 6 deficiency","type":"exact"}],"termid":"MONDO:0013462","xrefs":{"Monarch":{"xref_id":"0013462"}}}


id: GO:0006859
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed extracellular movement of carbohydrates.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete extracellular carbohydrate transport (obsolete GO:0006859)","termid":"GO:0006859"}


id: PBO:0002090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RhoGEF Scd1","termid":"PBO:0002090"}


id: GO:0006657
data:
  {"annotated_genes":["SJAG_00946","SJAG_01918"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57113,61882],"is_not":false,"summary":null,"term":"GO:0006657"}]},"cv_name":"biological_process","definition":"The phosphatidylcholine biosynthetic process that begins with the phosphorylation of choline and ends with the combination of CDP-choline with diacylglycerol to form phosphatidylcholine.","definition_xrefs":["ISBN:0471331309","MetaCyc:PWY3O-450"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylcholine biosynthetic process","termid":"GO:0006656"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00946":null,"SJAG_01918":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"CDP-choline pathway","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000108":null},"synonyms":[{"name":"Kennedy pathway","type":"exact"},{"name":"phosphatidylcholine biosynthesis from choline","type":"exact"}],"termid":"GO:0006657","terms_by_termid":{"GO:0006657":null}}


id: GO:0045295
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to catenin complex gamma subunit.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"gamma-catenin binding","synonyms":[{"name":"plakoglobin binding","type":"exact"}],"termid":"GO:0045295"}


id: MONDO:0014923
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any peeling skin syndrome in which the cause of the disease is a mutation in the SERPINB8 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exfoliative ichthyosis","termid":"MONDO:0017339"},{"relation_name":"is_a","term_name":"peeling skin syndrome","termid":"MONDO:0019347"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"peeling skin syndrome 5","secondary_identifiers":["MEDGEN:934677","OMIM:617115","UMLS:C4310710","GARD:18427","DOID:0070524"],"synonyms":[{"name":"PSS5","type":"exact"},{"name":"SERPINB8 peeling skin syndrome","type":"exact"},{"name":"peeling skin syndrome 5","type":"exact"},{"name":"peeling skin syndrome 5; PSS5","type":"exact"},{"name":"peeling skin syndrome caused by mutation in SERPINB8","type":"exact"},{"name":"peeling skin syndrome type 5","type":"exact"}],"termid":"MONDO:0014923","xrefs":{"Monarch":{"xref_id":"0014923"}}}


id: MONDO:1012773
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cystinuria that occurs in cats due to a mutation in the SLC7A9 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cystinuria, non-human animal","termid":"MONDO:1012968"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystinuria, SLC7A9-related, domestic cat","secondary_identifiers":["OMIA:002023-9685"],"synonyms":[{"name":"cystinuria, type B, domestic cat","type":"related"}],"termid":"MONDO:1012773","xrefs":{"Monarch":{"xref_id":"1012773"}}}


id: GO:0046473
data:
  {"annotated_genes":["SJAG_04323","SJAG_01519","SJAG_02654","SJAG_04319","SJAG_01957","SJAG_01036","SJAG_04883"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72781,106694,73348,79448,73171,63043,94830],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006654"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycerophospholipid metabolic process","termid":"GO:0006650"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01036":null,"SJAG_01519":null,"SJAG_01957":null,"SJAG_02654":null,"SJAG_04319":null,"SJAG_04323":null,"SJAG_04883":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"phosphatidic acid metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"phosphatidic acid metabolism","type":"exact"}],"termid":"GO:0046473","terms_by_termid":{"GO:0006654":null}}


id: GO:0009180
data:
  {"annotated_genes":["SJAG_02038"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73582],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006172"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of purine ribonucleoside diphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with diphosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleoside diphosphate biosynthetic process","termid":"GO:0009136"},{"relation_name":"is_a","term_name":"purine ribonucleoside diphosphate metabolic process","termid":"GO:0009179"},{"relation_name":"is_a","term_name":"ribonucleoside diphosphate biosynthetic process","termid":"GO:0009188"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02038":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"purine ribonucleoside diphosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"purine ribonucleoside diphosphate anabolism","type":"exact"},{"name":"purine ribonucleoside diphosphate biosynthesis","type":"exact"},{"name":"purine ribonucleoside diphosphate formation","type":"exact"},{"name":"purine ribonucleoside diphosphate synthesis","type":"exact"}],"termid":"GO:0009180","terms_by_termid":{"GO:0006172":null}}


id: PBO:0046385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endothelium and lymphocyte associated ASCH domain 2","termid":"PBO:0046385"}


id: PBO:0048327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 38","termid":"PBO:0048327"}


id: GO:1990278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of activity of the transcription factor MBF.","definition_xrefs":["PMID:11795845"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of MBF transcription factor activity (obsolete GO:1990278)","synonyms":[{"name":"positive regulation of MBF transcription factor activity","type":"exact"}],"termid":"GO:1990278"}


id: MONDO:0018858
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Graham Little-Piccardi-Lassueur syndrome is a variant of lichen planopilaris characterized by the clinical triad of progressive cicatricial (scarring) alopecia of the scalp, follicular keratotic papules on glabrous skin, and variable alopecia of the axillae and groin.","definition_xrefs":["Orphanet:505"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alopecia","termid":"MONDO:0004907"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Graham Little-Piccardi-Lassueur syndrome","secondary_identifiers":["UMLS:C4273658","MEDGEN:905915","SCTID:718215008","ICD10CM:L66.1","GARD:3195"],"synonyms":[{"name":"Graham Little syndrome","type":"exact"},{"name":"Graham-Little-Piccardi-Lassueur syndrome","type":"related"},{"name":"Piccardi-Lassueur-Little syndrome","type":"exact"}],"termid":"MONDO:0018858","xrefs":{"Monarch":{"xref_id":"0018858"}}}


id: GO:0003436
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix and contributes to the shaping of the growth plate cartilage of an endochondral bone.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell adhesion","termid":"GO:0030155"},{"relation_name":"part_of","term_name":"growth plate cartilage morphogenesis","termid":"GO:0003422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"regulation of cell adhesion involved in growth plate cartilage morphogenesis","termid":"GO:0003436"}


id: PBO:0081077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZDHHC8B, pseudogene","termid":"PBO:0081077"}


id: GO:0071707
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which immunoglobulin heavy chain V, D, and J gene segments are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS).","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin V(D)J recombination","termid":"GO:0033152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0006310","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"immunoglobulin heavy chain V-D-J recombination","synonyms":[{"name":"immunoglobulin V(D)J joining","type":"broad"},{"name":"immunoglobulin V(D)J recombination","type":"broad"},{"name":"immunoglobulin V-D-J joining","type":"exact"}],"termid":"GO:0071707"}


id: PBO:0090275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynactin complex subunit, dynamitin Jnm1","termid":"PBO:0090275"}


id: GO:0039626
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The intermediate layer of a triple concentric icosahedral capsid. Intermediate capsids are part of reoviridae virions.","definition_xrefs":["UniProtKB-KW:KW-1154"],"direct_ancestors":[{"relation_name":"is_a","term_name":"virion component","termid":"GO:0044423"},{"relation_name":"part_of","term_name":"icosahedral viral capsid","termid":"GO:0019030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"viral intermediate capsid","synonyms":[{"name":"intermediate capsid","type":"exact"}],"termid":"GO:0039626"}


id: GO:0005030
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a neurotrophin, any of a family of growth factors that prevent apoptosis in neurons and promote nerve growth, and transmitting the signal to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor activity","termid":"GO:0038023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"neurotrophin receptor activity","termid":"GO:0005030"}


id: GO:0038041
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Inhibition of one protomer of a G protein-coupled receptor (GPCR) heterodimer by the associated subunit. For example, agonist activation of one cytokine receptor can prevent activation of its associated cytokine receptor subunit.","definition_xrefs":["GOC:bf","GOC:al","PMID:15979374"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of G protein-coupled receptor signaling pathway","termid":"GO:0008277"},{"relation_name":"is_a","term_name":"negative regulation of signaling receptor activity","termid":"GO:2000272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"cross-receptor inhibition within G protein-coupled receptor heterodimer","synonyms":[{"name":"cross-receptor inhibition within G-protein coupled receptor heterodimer","type":"exact"}],"termid":"GO:0038041"}


id: PBO:0027819
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_pyrimidine_salvage_gene_mRNA_during_vegetative_growth","termid":"PBO:0027819"}


id: PBO:0075643
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sprouty RTK signaling antagonist 2","termid":"PBO:0075643"}


id: GO:0055011
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a cardiac muscle cell in the atrium. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction. The atrium is the part of the heart that receives blood into the organ.","definition_xrefs":["GOC:devbiol","GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac muscle cell differentiation","termid":"GO:0055007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"atrial cardiac muscle cell differentiation","synonyms":[{"name":"atrial cardiomyocyte differentiation","type":"exact"},{"name":"atrial heart muscle cell differentiation","type":"exact"}],"termid":"GO:0055011"}


id: PBO:0040991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bolA family member 2 pseudogene 1","termid":"PBO:0040991"}


id: MONDO:0003427
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign lung neoplasm characterized by the presence of a fibrovascular stroma lined by cuboidal to columnar cells. Patients are usually asymptomatic and it is incidentally discovered as a pulmonary nodule during chest X-ray examination. Surgical excision is curative.","definition_xrefs":["NCIT:C3494"],"direct_ancestors":[{"relation_name":"is_a","term_name":"papillary adenoma","termid":"MONDO:0002533"},{"relation_name":"is_a","term_name":"bronchial neoplasm","termid":"MONDO:0002807"},{"relation_name":"is_a","term_name":"lung adenoma","termid":"MONDO:0003422"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bronchus adenoma","secondary_identifiers":["UMLS:C0149845","DOID:5391","MEDGEN:56206","ICDO:8260/0"],"synonyms":[{"name":"adenoma of bronchus","type":"exact"},{"name":"adenoma of the bronchus","type":"exact"},{"name":"adenoma, bronchial, benign","type":"exact"},{"name":"bronchial adenoma","type":"exact"},{"name":"bronchial adenoma NOS (morphologic abnormality)","type":"exact"},{"name":"bronchus adenoma","type":"exact"},{"name":"lung papillary adenoma","type":"exact"},{"name":"papillary adenoma of type II pneumocytes","type":"exact"},{"name":"peripheral papillary tumor of type II pneumocytes","type":"exact"},{"name":"peripheral papillary tumour of type II pneumocytes","type":"exact"},{"name":"type II pneumocyte adenoma","type":"exact"}],"termid":"MONDO:0003427","xrefs":{"Monarch":{"xref_id":"0003427"}}}


id: PBO:0078692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon AAG) 3-1","termid":"PBO:0078692"}


id: PBO:0046640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group W member 21","termid":"PBO:0046640"}


id: MONDO:0800483
data:
  {"annotated_genes":["SJAG_00504"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007943"}]},"cv_name":"mondo","definition":"A congenital malformation syndrome characterized by mandibulofacial dysostosis and anterior upper-limb defects, though occasionally, lower-limb defects have also been reported. Intrafamilial variability has been observed along with phenotype variability and severity including shoulder and pelvic girdle hypoplasia, fibular hypoplasia and eleven ribs.","direct_ancestors":[{"relation_name":"is_a","term_name":"acrofacial dysostosis","termid":"MONDO:0018237"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00504":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"SF3B4-related acrofacial dysostosis","references_by_uniquename":{"PB_REF:0000006":null},"synonyms":[{"name":"SF3B4-related acrofacial dysostosis","type":"exact"}],"termid":"MONDO:0800483","terms_by_termid":{"MONDO:0007943":null},"xrefs":{"Monarch":{"xref_id":"0800483"}}}


id: MONDO:0006406
data:
  {"annotated_genes":["SJAG_03689"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88091],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011014"}]},"cv_name":"mondo","definition":"A malignant epithelial neoplasm characterized by the presence of spindle cells and anaplastic morphologic features. Giant cells and a sarcomatous component may also be present.","definition_xrefs":["NCIT:C27004"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"squamous cell carcinoma","termid":"MONDO:0005096"},{"relation_name":"is_a","term_name":"carcinoma","termid":"MONDO:0004993"},{"relation_name":"is_a","term_name":"anaplastic cancer","termid":"MONDO:0020633"},{"relation_name":"is_a","term_name":"malignant spindle cell neoplasm","termid":"MONDO:0020663"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03689":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"sarcomatoid carcinoma","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:60009","EFO:1000520","ICDO:8032/3","DOID:4015","ICDO:8033/3","UMLS:C0205697"],"synonyms":[{"name":"carcinoma, spindle cell, malignant","type":"exact"},{"name":"pseudosarcomatous carcinoma","type":"exact"},{"name":"sarcomatoid carcinoma","type":"exact"},{"name":"spindle cell carcinoma","type":"exact"},{"name":"spindle cell carcinoma (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0006406","terms_by_termid":{"MONDO:0011014":null},"xrefs":{"Monarch":{"xref_id":"0006406"}}}


id: PBO:0073677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIRPG antisense RNA 1","termid":"PBO:0073677"}


id: MONDO:0012830
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"10q22.3q23.3 microdeletion syndrome is a rare partial autosomal monosomy characterized by a mild facial dysmorphism variably including macrocephaly, broad forehead, hypertelorism or hypotelorism, deep-set eyes, upslanting or downslanting palpebral fissures, low-set ears, flat nasal bridge, smooth philtrum, thin upper lip), cleft palate, cerebellar and cardiac malformations, psychomotor development delay, and behavioral abnormalities (attention deficit hyperactivity disorder, autism). Other rare features may include congenital breast aplasia, arachnodactyly, joint hyperlaxity, club feet, feeding difficulties, failure to thrive.","definition_xrefs":["Orphanet:276413"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial monosomy of the long arm of chromosome 10","termid":"MONDO:0016909"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 10q23 deletion syndrome","secondary_identifiers":["GARD:17280","DOID:0060389","MEDGEN:906099","MESH:C567385","OMIM:612242","UMLS:C4225669"],"synonyms":[{"name":"10q22.3q23 microdeletion syndrome","type":"related"},{"name":"10q22.3q23.3 microdeletion syndrome","type":"related"},{"name":"Del(10)(q22.3q23.3)","type":"exact"},{"name":"chromosome 10Q22.3-q23.2 deletion syndrome","type":"related"},{"name":"chromosome 10q22.3-q23.2 deletion syndrome","type":"related"},{"name":"chromosome 10q23 deletion syndrome","type":"exact"},{"name":"deletion 10q22.3q23.3","type":"exact"},{"name":"juvenile polyposis of infancy","type":"related"},{"name":"juvenile polyposis, infantile","type":"related"},{"name":"monosomy 10q22.3q23.3","type":"exact"}],"termid":"MONDO:0012830","xrefs":{"Monarch":{"xref_id":"0012830"}}}


id: PBO:0069409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 669, pseudogene","termid":"PBO:0069409"}


id: PBO:0074611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 15","termid":"PBO:0074611"}


id: FYPO:0006105
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the removal of tubulin dimers from a microtubule occurs to a greater extent than normal in the lateral part of the cell.","definition_xrefs":["PMID:26443240","PomBase:mah","GO:0007019"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule depolymerization during vegetative growth","termid":"FYPO:0000902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000054"],"is_obsolete":false,"name":"increased microtubule depolymerization at cell side","synonyms":[{"name":"increased microtubule catastrophe at cell side","type":"related"},{"name":"increased microtubule depolymerisation at cell side","type":"exact"},{"name":"increased microtubule depolymerization at cell side during mitotic cell cycle","type":"related"},{"name":"increased microtubule depolymerization at cell side during vegetative growth","type":"exact"},{"name":"increased microtubule depolymerization at lateral part of cell","type":"exact"}],"termid":"FYPO:0006105"}


id: PBO:0000090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intergenic RNA (predicted)","termid":"PBO:0000090"}


id: PBO:0004171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat/BOP1NT protein (predicted)","termid":"PBO:0004171"}


id: PBO:0042921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycoprotein hormones, alpha polypeptide","termid":"PBO:0042921"}


id: PBO:0075502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatogenesis and centriole associated 1 like","termid":"PBO:0075502"}


id: PBO:0057815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3135b","termid":"PBO:0057815"}


id: GO:0043726
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-amino-6-(5-phospho-D-ribitylamino)uracil + H2O = 5-amino-6-(D-ribitylamino)uracil + phosphate.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016788","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"5-amino-6-(5-phosphoribitylamino)uracil phosphatase activity","secondary_identifiers":["MetaCyc:RIBOPHOSPHAT-RXN","GO:0019173","RHEA:25197","EC:3.1.3.104"],"synonyms":[{"name":"pyrimidine phosphatase activity","type":"exact"}],"termid":"GO:0043726"}


id: GO:0045436
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the cyclization of beta rings at one or both ends of the lycopene molecule (psi, psi-carotene) to form gamma-carotene or the bicyclic beta-carotene (beta, beta-carotene), respectively.","definition_xrefs":["PMID:8837512"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclase activity","termid":"GO:0009975"},{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity","termid":"GO:0016860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0009975"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016853","GO:0009975","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"lycopene beta cyclase activity","secondary_identifiers":["RHEA:32219","MetaCyc:RXN1F-150"],"synonyms":[{"name":"crtL","type":"related"},{"name":"lycopene cyclase","type":"broad"}],"termid":"GO:0045436"}


id: PBO:0061232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOP9 nucleolar protein","termid":"PBO:0061232"}


id: GO:0047007
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD+ + pregnan-21-ol = H+ + NADH + pregnan-21-al.","definition_xrefs":["RHEA:11448"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0033764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"pregnan-21-ol dehydrogenase (NAD+) activity","secondary_identifiers":["EC:1.1.1.150","KEGG_REACTION:R03043","MetaCyc:1.1.1.150-RXN"],"synonyms":[{"name":"21-hydroxysteroid dehydrogenase (NAD+) activity","type":"broad"},{"name":"21-hydroxysteroid:NAD+ 21-oxidoreductase activity","type":"broad"}],"termid":"GO:0047007"}


id: PBO:0091414
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human XPO1","termid":"PBO:0091414"}


id: GO:0047121
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: A + H2O + isoquinoline = AH(2) + isoquinolin-1(2H)-one.","definition_xrefs":["EC:1.3.99.16","RHEA:11588"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors","termid":"GO:0016627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"isoquinoline 1-oxidoreductase activity","secondary_identifiers":["KEGG_REACTION:R05151","MetaCyc:1.3.99.16-RXN"],"synonyms":[{"name":"isoquinoline:acceptor 1-oxidoreductase (hydroxylating)","type":"related"}],"termid":"GO:0047121"}


id: PBO:0080956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Z-DNA binding protein 1","termid":"PBO:0080956"}


id: GO:0010487
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methioninamine + spermidine = S-methyl-5'-thioadenosine + thermospermine + H+.","definition_xrefs":["EC:2.5.1.79","PMID:17560575","MetaCyc:RXN-11190"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016765"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016765"],"is_obsolete":false,"name":"thermospermine synthase activity","secondary_identifiers":["RHEA:30515"],"termid":"GO:0010487"}


id: PBO:0045773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extracellular matrix protein X-linked, pseudogene","termid":"PBO:0045773"}


id: GO:0070767
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains BRCA1 and Rad 51, and is involved in the control of recombination and of genome integrity.","definition_xrefs":["PMID:9008167","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"BRCA1-Rad51 complex","termid":"GO:0070767"}


id: PBO:0017621
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ataxia","termid":"PBO:0017621"}


id: PBO:0087591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the ARP2/3 complex; ARP2/3 is required for the motility and integrity of cortical actin patches; required for cortical localization of calmodulin","termid":"PBO:0087591"}


id: MONDO:0018953
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Enlarged parietal foramina (EPF) is a developmental defect, characterized by variable intramembranous ossification defects of the parietal bones, which is either asymptomatic, symptomatic (headaches, nausea, vomiting, intellectual disability) or associated with other pathologies.","definition_xrefs":["Orphanet:60015"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural tube defect","termid":"MONDO:0018075"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0020022"}],"interesting_parent_ids":["MONDO:0020022"],"is_obsolete":false,"name":"parietal foramina","secondary_identifiers":["OMIMPS:168500","SCTID:718099006","DOID:0060285","GARD:16662","icd11.foundation:905361904","HP:0002697","MESH:C566826"],"synonyms":[{"name":"Caitlin marks","type":"exact"},{"name":"catlin marks","type":"exact"},{"name":"enlarged parietal foramina","type":"exact"},{"name":"fenestrae parietales symmetricae","type":"exact"},{"name":"foramina parietalia permagna","type":"exact"},{"name":"hereditary cranium bifidum","type":"exact"},{"name":"parietal foramina","type":"exact"},{"name":"symmetric parietal foramina","type":"exact"}],"termid":"MONDO:0018953","xrefs":{"Monarch":{"xref_id":"0018953"}}}


id: FYPO:0003855
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide). Cells stop growing (and may die) at a concentration of MTT that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to MTT","synonyms":[{"name":"hypersensitive to MTT","type":"exact"},{"name":"sensitive to 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide","type":"exact"},{"name":"sensitive to MTT during mitotic cell cycle","type":"related"},{"name":"sensitive to MTT during vegetative growth","type":"exact"}],"termid":"FYPO:0003855"}


id: GO:2000613
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of thyroid-stimulating hormone secretion.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of peptide hormone secretion","termid":"GO:0090278"},{"relation_name":"is_a","term_name":"regulation of thyroid-stimulating hormone secretion","termid":"GO:2000612"},{"relation_name":"negatively_regulates","term_name":"thyroid-stimulating hormone secretion","termid":"GO:0070460"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0023052"],"is_obsolete":false,"name":"negative regulation of thyroid-stimulating hormone secretion","synonyms":[{"name":"negative regulation of TSH secretion","type":"exact"},{"name":"negative regulation of thyroid stimulating hormone secretion","type":"exact"}],"termid":"GO:2000613"}


id: GO:0044790
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a host organism stops, prevents or reduces the frequency, rate or extent of the release of a virus with which it is infected, from its cells.","definition_xrefs":["PMID:18305167","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"defense response to virus","termid":"GO:0051607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"suppression of viral release by host","secondary_identifiers":["GO:1902187"],"synonyms":[{"name":"down regulation of release of virus from host","type":"exact"},{"name":"down regulation of viral exit","type":"exact"},{"name":"down regulation of viral release","type":"exact"},{"name":"down regulation of viral release from host cell","type":"exact"},{"name":"down regulation of viral shedding","type":"exact"},{"name":"down-regulation of release of virus from host","type":"exact"},{"name":"down-regulation of viral exit","type":"exact"},{"name":"down-regulation of viral release","type":"exact"},{"name":"down-regulation of viral release from host cell","type":"exact"},{"name":"down-regulation of viral shedding","type":"exact"},{"name":"downregulation of release of virus from host","type":"exact"},{"name":"downregulation of viral exit","type":"exact"},{"name":"downregulation of viral release","type":"exact"},{"name":"downregulation of viral release from host cell","type":"exact"},{"name":"downregulation of viral shedding","type":"exact"},{"name":"inhibition of release of virus from host","type":"exact"},{"name":"inhibition of viral exit","type":"exact"},{"name":"inhibition of viral release","type":"exact"},{"name":"inhibition of viral release from host cell","type":"narrow"},{"name":"inhibition of viral shedding","type":"exact"},{"name":"negative regulation by host of viral release from host cell","type":"exact"},{"name":"negative regulation of release of virus from host","type":"exact"},{"name":"negative regulation of viral exit","type":"exact"},{"name":"negative regulation of viral release","type":"exact"},{"name":"negative regulation of viral release from host cell","type":"exact"},{"name":"negative regulation of viral shedding","type":"exact"}],"termid":"GO:0044790"}


id: PBO:0046059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 3 subunit I pseudogene 1","termid":"PBO:0046059"}


id: GO:0039508
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the functional activity of a host receptor.","definition_xrefs":["GOC:sp","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host receptor activity (obsolete GO:0039508)","synonyms":[{"name":"down-regulation by virus of host receptor activity","type":"exact"},{"name":"downregulation by virus of host receptor activity","type":"exact"},{"name":"inhibition by virus of host receptor activity","type":"narrow"},{"name":"negative regulation by virus of host receptor activity","type":"exact"},{"name":"suppression by virus of host receptor function","type":"exact"},{"name":"viral inhibition of host receptor","type":"exact"}],"termid":"GO:0039508"}


id: PBO:0085066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-essential sumoylated protein of unknown function; similar to components of human SWI/SNF complex including SMRD3; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm, nucleus and nucleolus; TRI1 has a paralog, UAF30, that arose from the whole genome duplication","termid":"PBO:0085066"}


id: MONDO:0001565
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"binocular vision disease","termid":"MONDO:0001564"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abnormal retinal correspondence","secondary_identifiers":["icd11.foundation:119512999","ICD10CM:H53.31","ICD9:368.34","MEDGEN:509763","SCTID:79195003","UMLS:C0155010","DOID:12668"],"termid":"MONDO:0001565","xrefs":{"Monarch":{"xref_id":"0001565"}}}


id: MONDO:0010515
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meester-Loeys syndrome","secondary_identifiers":["MEDGEN:934778","NCIT:C187989","OMIM:300989","DOID:0111861","UMLS:C4310811"],"synonyms":[{"name":"MRLS","type":"exact"},{"name":"Meester-Loeys syndrome","type":"exact"},{"name":"Meester-Loeys syndrome; MRLS","type":"exact"}],"termid":"MONDO:0010515","xrefs":{"Monarch":{"xref_id":"0010515"}}}


id: PBO:0075597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPNS lysolipid transporter 1, lysophospholipid","termid":"PBO:0075597"}


id: PBO:0026735
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_cell_cycle_regulation_upon_nitrogen_source_shift","termid":"PBO:0026735"}


id: GO:0070920
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of regulatory non-coding RNA processing.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gene silencing by regulatory ncRNA","termid":"GO:0060966"},{"relation_name":"is_a","term_name":"regulation of primary metabolic process","termid":"GO:0080090"},{"relation_name":"regulates","term_name":"regulatory ncRNA processing","termid":"GO:0070918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of regulatory ncRNA processing","synonyms":[{"name":"regulation of gene silencing by RNA, production of guide RNA","type":"exact"},{"name":"regulation of gene silencing by RNA, production of small RNA","type":"exact"},{"name":"regulation of production of small RNA involved in gene silencing by RNA","type":"narrow"}],"termid":"GO:0070920"}


id: MONDO:0006714
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Abnormal balloon- or sac-like dilatation in the wall of coronary vessels. Most coronary aneurysms are due to coronary atherosclerosis, and the rest are due to inflammatory diseases, such as kawasaki disease.","definition_xrefs":["MESH:D003323"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"heart aneurysm","termid":"MONDO:0006779"},{"relation_name":"is_a","term_name":"coronary artery disorder","termid":"MONDO:0005010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"coronary aneurysm","secondary_identifiers":["DOID:3362","HP:0030882","EFO:1000881","MedDRA:10002348","SCTID:50570003","ICD9:414.11","MEDGEN:3622","UMLS:C0010051"],"synonyms":[{"name":"aneurysm of coronary vessels","type":"exact"},{"name":"aneurysmal lesion of coronary artery","type":"exact"},{"name":"arteriovenous aneurysm of coronary vessels","type":"exact"},{"name":"coronary artery aneurysm","type":"related"}],"termid":"MONDO:0006714","xrefs":{"Monarch":{"xref_id":"0006714"}}}


id: FYPO:0001729
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-cysteine measured in the vacuole is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in vacuole","termid":"FYPO:0001603"},{"relation_name":"is_a","term_name":"normal cellular cysteine level","termid":"FYPO:0001726"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal vacuolar cysteine level","synonyms":[{"name":"normal level of cysteine in vacuole","type":"exact"},{"name":"normal vacuolar L-cysteine level","type":"exact"},{"name":"normal vacuolar cysteine level during mitotic cell cycle","type":"related"},{"name":"normal vacuolar cysteine level during vegetative growth","type":"exact"}],"termid":"FYPO:0001729"}


id: PBO:0090974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase Alg3","termid":"PBO:0090974"}


id: FYPO:0005606
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the region of a chromosome at which a DNA double-strand break has occurred begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to double-strand break site","termid":"FYPO:0002473"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"delayed onset of protein localization to double-strand break site","synonyms":[{"name":"delayed onset of protein localisation to double-strand break site","type":"exact"},{"name":"delayed onset of protein localization to DSB site","type":"exact"},{"name":"delayed onset of protein localization to double-strand break site during mitotic cell cycle","type":"related"},{"name":"delayed onset of protein localization to double-strand break site during vegetative growth","type":"exact"},{"name":"delayed onset of protein localization to site of double-strand break","type":"exact"},{"name":"delayed protein localization to double-strand break site","type":"exact"}],"termid":"FYPO:0005606"}


id: GO:0020011
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The plastid organelle found in apicomplexans.","definition_xrefs":["ISBN:0521664470"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid","termid":"GO:0009536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"apicoplast","secondary_identifiers":["Wikipedia:Apicoplast"],"termid":"GO:0020011"}


id: MONDO:0011463
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, genetic, autosomal recessive axonal hereditary motor and sensory neuropathy disease characterized by prenatal onset of a severe sensorimotor axonal polyneuropathy (reflected by reduced fetal movement and polyhydramnios), manifesting, at birth, with respiratory failure requiring mechanical ventilation, profound muscular hypotonia, rapidly progressing distal muscle weakness, and absent deep tendon reflexes, in the absence of contractures, leading to death before 8 months of age. Neuropathological findings show severe loss of large- and medium-sized myelinated fibers without signs of demyelination.","definition_xrefs":["Orphanet:538096"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyneuropathy, lethal neonatal, axonal sensorimotor, autosomal recessive","secondary_identifiers":["OMIM:604431","UMLS:C1858353","MEDGEN:348918","MESH:C565773","GARD:17976"],"synonyms":[{"name":"polyneuropathy, lethal neonatal, axonal sensorimotor, autosomal recessive","type":"exact"}],"termid":"MONDO:0011463","xrefs":{"Monarch":{"xref_id":"0011463"}}}


id: GO:0044436
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of a thylakoid, a sac-like vesicle that bears the photosynthetic pigments in photosynthetic organisms.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete thylakoid part (obsolete GO:0044436)","termid":"GO:0044436"}


id: PBO:0047765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FOS like 1, AP-1 transcription factor subunit","termid":"PBO:0047765"}


id: PR:000027583
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A meiosis protein mei2 unmodified form in Schizosaccharomyces pombe.","definition_xrefs":["PomBase:MAH","PMID:9062192"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiosis protein mei2","termid":"PR:000027567"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mei2/UnMod","pombase_gene_id":"SPAC27D7.03c","synonyms":[{"name":"PomBase_original_PRO_term_name: meiosis protein mei2 unmodified form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-mei2/UnMod","type":"exact"},{"name":"mei2/UnMod","type":"exact"}],"termid":"PR:000027583"}


id: GO:0140942
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysyl9-[histone H3] + 2 S-adenosyl-L-methionine = 2 H+ + N6,N6-dimethyl-L-lysyl9-[histone H3] + 2 S-adenosyl-L-homocysteine. This reaction is the successive addition of two methyl groups to the unmethylated lysine residue at position 9 of histone H3, producing histone H3K9me2.","definition_xrefs":["RHEA:64444"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3K9 methyltransferase activity","termid":"GO:0046974"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0008276"}],"interesting_parent_ids":["GO:0140096","GO:0003674","GO:0016741","GO:0003824","GO:0008276","GO:0016740"],"is_obsolete":false,"name":"histone H3K9 dimethyltransferase activity","secondary_identifiers":["EC:2.1.1.368"],"synonyms":[{"name":"histone H3-K9 dimethylation","type":"broad"},{"name":"histone H3K9 dimethylase activity","type":"exact"},{"name":"histone H3K9 dimethylation","type":"broad"},{"name":"histone H3K9 mono/dimethylase activity","type":"exact"},{"name":"histone lysine N-dimethyltransferase activity (H3-K9 specific)","type":"exact"}],"termid":"GO:0140942"}


id: PBO:0060058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 5","termid":"PBO:0060058"}


id: GO:1990309
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type-II dockerin domain of a protein. Type-II dockerin domain is the binding partner of type-II cohesin domain.","definition_xrefs":["PMID:23195689","PMID:24080387","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"type-II dockerin domain binding","termid":"GO:1990309"}


id: GO:0044594
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 17-beta-hydroxysteroid + NAD+ = a 17-oxosteroid + NADH + H+.","definition_xrefs":["RHEA:81599","PMID:17074428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0033764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"17-beta-hydroxysteroid dehydrogenase (NAD+) activity","termid":"GO:0044594"}


id: MONDO:0001085
data:
  {"annotated_genes":["SJAG_03994"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87884],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013898"}]},"cv_name":"mondo","definition":"Inflammation of the renal tubules and supporting tissues of the kidney.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephritis","termid":"MONDO:0001166"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03994":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"interstitial nephritis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICD10CM:N10-N16","MESH:D009395","DOID:1063","MEDGEN:11952","SCTID:28689008","UMLS:C0041349","NCIT:C26834","ICD9:583.89","NANDO:2200136"],"synonyms":[{"name":"Tubulointerstitial nephritis","type":"exact"},{"name":"renal tubulo-interstitial disease","type":"exact"}],"termid":"MONDO:0001085","terms_by_termid":{"MONDO:0013898":null},"xrefs":{"Monarch":{"xref_id":"0001085"}}}


id: PBO:0053355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 254","termid":"PBO:0053355"}


id: PBO:0028136
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_dense_body_present_in_nucleolus","termid":"PBO:0028136"}


id: PBO:0057089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 185","termid":"PBO:0057089"}


id: PBO:0043305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calmegin","termid":"PBO:0043305"}


id: GO:0019964
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to type II interferon, also known as interferon-gamma.","definition_xrefs":["PMID:15546383","ISBN:0126896631","GOC:ai","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interferon binding","termid":"GO:0019961"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"type II interferon binding","synonyms":[{"name":"IFN-gamma binding","type":"exact"},{"name":"IFNG binding","type":"exact"},{"name":"interferon-gamma binding","type":"broad"}],"termid":"GO:0019964"}


id: PR:Q9USJ5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hem12 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9USJ5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uroporphyrinogen decarboxylase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4B3.05c","synonyms":[{"name":"Spom972h-hem12","type":"exact"},{"name":"UPD (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"URO-D (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USJ5"}


id: GO:0150144
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of CD80 biosynthetic process.","definition_xrefs":["PMID:26936882","GOC:aruk"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of CD80 production (obsolete GO:0150144)","synonyms":[{"name":"negative regulation of CD80 biosynthetic process","type":"exact"}],"termid":"GO:0150144"}


id: GO:1900221
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of amyloid-beta clearance.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"amyloid-beta clearance","termid":"GO:0097242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of amyloid-beta clearance","synonyms":[{"name":"regulation of beta-amyloid clearance","type":"exact"}],"termid":"GO:1900221"}


id: PBO:0062616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily V member 7 pseudogene","termid":"PBO:0062616"}


id: MOD:01569
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a threonine residue with the Applied Biosystems iTRAQ8plex-118 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ8plex-118 reporter+balance reagent acylated residue","termid":"MOD:01563"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent O-acylated residue","termid":"MOD:01714"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ8plex-118 reporter+balance reagent O3-acylated threonine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"}],"termid":"MOD:01569"}


id: PBO:0053085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"late cornified envelope 1C","termid":"PBO:0053085"}


id: GO:0051538
data:
  {"annotated_genes":["SJAG_00260","SJAG_04054"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[60112,67695],"is_not":false,"summary":null,"term":"GO:0051538"}]},"cv_name":"molecular_function","definition":"Binding to a 3 iron, 4 sulfur (3Fe-4S) cluster; this cluster consists of three iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. It is essentially a 4Fe-4S cluster with one iron missing.","definition_xrefs":["PMID:15952888","GOC:ai","Wikipedia:Iron-sulfur_cluster"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron-sulfur cluster binding","termid":"GO:0051536"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00260":null,"SJAG_04054":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"3 iron, 4 sulfur cluster binding","references_by_uniquename":{"GO_REF:0000043":null},"synonyms":[{"name":"3 Fe 4 S cluster binding","type":"exact"},{"name":"3 iron, 4 sulphur cluster binding","type":"exact"},{"name":"3Fe-4S cluster binding","type":"exact"},{"name":"iron-sulfur cluster 3Fe-4S binding","type":"exact"},{"name":"iron-sulphur cluster 3Fe-4S binding","type":"exact"},{"name":"triiron tetrasulfide cluster binding","type":"exact"},{"name":"triiron tetrasulphide cluster binding","type":"exact"}],"termid":"GO:0051538","terms_by_termid":{"GO:0051538":null}}


id: MONDO:0033364
data:
  {"annotated_genes":["SJAG_02913"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87167],"is_not":false,"summary":null,"term":"MONDO:0033364"}]},"cv_name":"mondo","definition":"A developmental and epileptic encephalopathy characterized by onset in the first weeks or months of life of refractory seizures, profoundly impaired intellectual development, absent speech, spastic quadriplegia, and dyskinetic movements that has material basis in homozygous or compound heterozygous mutation in the PIGP gene on chromosome 21q22.","definition_xrefs":["DOID:0080283"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"inherited lipid metabolism disorder","termid":"MONDO:0002525"},{"relation_name":"is_a","term_name":"congenital disorder of glycosylation","termid":"MONDO:0015286"},{"relation_name":"is_a","term_name":"disorder of GPI anchor biosynthesis","termid":"MONDO:0024321"},{"relation_name":"is_a","term_name":"genetic developmental and epileptic encephalopathy","termid":"MONDO:0100062"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02913":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005027"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005027","MONDO:0024322","MONDO:0005066","MONDO:0700092","MONDO:0002525"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy, 55","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4539843","GARD:16241","MEDGEN:1622363","OMIM:617599"],"synonyms":[{"name":"DEE55","type":"exact"},{"name":"EIEE55","type":"exact"},{"name":"developmental and epileptic encephalopathy 55","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 55","type":"exact"},{"name":"glycosylphosphatidylinositol biosynthesis defect 14","type":"related"},{"name":"infantile epileptic encephalopathy 55","type":"related"}],"termid":"MONDO:0033364","terms_by_termid":{"MONDO:0033364":null},"xrefs":{"Monarch":{"xref_id":"0033364"}}}


id: PBO:0029309
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-swollen_spheroid_cell","termid":"PBO:0029309"}


id: MONDO:0020783
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"angioosteohypertrophic syndrome","termid":"MONDO:0007864"},{"relation_name":"is_a","term_name":"capillary malformation-arteriovenous malformation syndrome","termid":"MONDO:0012016"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capillary malformation-arteriovenous malformation 1","secondary_identifiers":["UMLS:C4747394","SCTID:234143003","OMIM:608355","Orphanet:90307","GARD:9787","MEDGEN:1648501","ICD9:759.6","OMIM:608354"],"synonyms":[{"name":"CAPILLARY MALFORMATION-ARTERIOVENOUS MALFORMATION 1","type":"exact"},{"name":"CMAVM1","type":"exact"},{"name":"Capillary Malformation-Arteriovenous Malformation","type":"broad"},{"name":"PKWS","type":"exact"},{"name":"Parkes Weber syndrome","type":"exact"},{"name":"capillary malformation-arteriovenous malformation 1","type":"exact"}],"termid":"MONDO:0020783","xrefs":{"Monarch":{"xref_id":"0020783"}}}


id: RO:0002261
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"c has-application-role r iff c has-role r and r is an application role (CHEBI:33232)","direct_ancestors":[{"relation_name":"is_a","term_name":"has_role","termid":"RO:0000087"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_application_role","termid":"RO:0002261"}


id: PBO:0072244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S20 pseudogene 19","termid":"PBO:0072244"}


id: PBO:0080782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XK related, Y-linked pseudogene 2","termid":"PBO:0080782"}


id: SO:0000988
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A quality of a nucleotide polymer that has no terminal nucleotide residues.","definition_xrefs":["SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"topology_attribute","termid":"SO:0000986"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"circular","synonyms":[{"name":"zero-ended","type":"related"}],"termid":"SO:0000988"}


id: PBO:0084050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase-activating protein for Gpa1p; regulates desensitization to alpha factor pheromone; also required to prevent receptor-independent signaling of the mating pathway; member of the RGS (regulator of G-protein signaling) family","termid":"PBO:0084050"}


id: GO:0043460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a long or persistent exposure to a lithium ion stimulus.","definition_xrefs":["PMID:10208444"],"gene_count":0,"genotype_count":0,"name":"obsolete response to long exposure to lithium ion (obsolete GO:0043460)","synonyms":[{"name":"response to long exposure to lithium ion","type":"exact"}],"termid":"GO:0043460"}


id: PBO:0039515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 30B pseudogene 3","termid":"PBO:0039515"}


id: PBO:0085399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane protein, component of eisosomes; long-lived protein that remains stable in eisosomes of mother cells while other eisosome proteins, Pil1p and Lsp1p, turn over; may function to anchor the eisosome in place; sporulation and plasma membrane sphingolipid content are altered in mutants; localizes to furrow-like invaginations (MCC patches)","termid":"PBO:0085399"}


id: PBO:0078746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA methyltransferase 10A","termid":"PBO:0078746"}


id: GO:0019647
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pathway in which formaldehyde is used as a carbon source in the ribulose monophosphate cycle. Methanotrophic bacteria produce formaldehyde from the oxidation of methane and methanol, and then assimilate it via the ribulose monophosphate cycle to form intermediates of the central metabolic routes that are subsequently used for biosynthesis of cell material. Three molecules of formaldehyde are assimilated, forming a three-carbon intermediate of central metabolism; in this pathway, all cellular carbon is assimilated at the oxidation level of formaldehyde.","definition_xrefs":["MetaCyc:PWY-1861"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formaldehyde assimilation","termid":"GO:0019649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"formaldehyde assimilation via ribulose monophosphate cycle","synonyms":[{"name":"formaldehyde assimilation via RuMP cycle","type":"exact"},{"name":"ribulose monophosphate cycle","type":"broad"}],"termid":"GO:0019647"}


id: MONDO:0000829
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete early-onset Parkinson disease (obsolete MONDO:0000829)","termid":"MONDO:0000829","xrefs":{"Monarch":{"xref_id":"0000829"}}}


id: GO:0018362
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The covalent linkage of heme to peroxidase via dihydroxyheme-L-aspartyl ester-L-glutamyl ester.","definition_xrefs":["RESID:AA0279"],"gene_count":0,"genotype_count":0,"name":"obsolete peroxidase-heme linkage via dihydroxyheme-L-aspartyl ester-L-glutamyl ester (obsolete GO:0018362)","synonyms":[{"name":"peroxidase-haem linkage via dihydroxyhaem-L-aspartyl ester-L-glutamyl ester","type":"exact"}],"termid":"GO:0018362"}


id: GO:0006258
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of UDP-alpha-D-glucose, a substance composed of UDP-alpha-D-glucose in glycosidic linkage with uridine diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-alpha-D-glucose metabolic process","termid":"GO:0006011"},{"relation_name":"is_a","term_name":"nucleotide-sugar catabolic process","termid":"GO:0009227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"UDP-alpha-D-glucose catabolic process","secondary_identifiers":["GO:0019691"],"synonyms":[{"name":"UDP-glucose breakdown","type":"exact"},{"name":"UDP-glucose catabolism","type":"exact"},{"name":"UDP-glucose conversion","type":"related"},{"name":"UDP-glucose degradation","type":"exact"}],"termid":"GO:0006258"}


id: GO:0034645
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular macromolecule biosynthetic process (obsolete GO:0034645)","synonyms":[{"name":"cellular biopolymer biosynthetic process","type":"exact"},{"name":"cellular macromolecule anabolism","type":"exact"},{"name":"cellular macromolecule biosynthesis","type":"exact"},{"name":"cellular macromolecule formation","type":"exact"},{"name":"cellular macromolecule synthesis","type":"exact"}],"termid":"GO:0034645"}


id: GO:0005359
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: glucose(out) + H(out)+ = glucose(in) + H(in)+. In low-affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. Symporter activity enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy.","definition_xrefs":["GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-glucose:proton symporter activity","termid":"GO:0005356"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"low-affinity D-glucose:proton symporter activity","synonyms":[{"name":"low-affinity glucose:proton symporter activity","type":"exact"},{"name":"low-affinity hydrogen/glucose transporter activity","type":"broad"},{"name":"low-affinity hydrogen:glucose symporter activity","type":"exact"},{"name":"low-affinity hydrogen:glucose transporter activity","type":"broad"}],"termid":"GO:0005359"}


id: MONDO:0023124
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial pulmonary arterial hypertension leucopenia and atrial septal defect","synonyms":[{"name":"familial PAH, leucopenia and ASD","type":"related"},{"name":"familial pulmonary arterial hypertension, leucopenia and ASD","type":"related"}],"termid":"MONDO:0023124","xrefs":{"Monarch":{"xref_id":"0023124"}}}


id: GO:0004491
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-methyl-3-oxopropanoate + CoA + NAD+ = propanoyl-CoA + CO2 + NADH + H+. Can also use malonate (3-oxopropanoate) as a substrate. The reaction occurs in two steps with the decarboxylation process preceding CoA-binding. Bicarbonate rather than CO2 is released as a final product.","definition_xrefs":["EC:1.2.1.27","PMID:2768248"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity","secondary_identifiers":["MetaCyc:1.2.1.27-RXN","Reactome:R-HSA-70893"],"synonyms":[{"name":"MMSA dehydrogenase activity","type":"related"},{"name":"MSDH activity","type":"related"},{"name":"methylmalonate-semialdehyde dehydrogenase (acylating) activity","type":"related"}],"termid":"GO:0004491"}


id: PBO:0027311
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_5'_deoxyribonuclease_(pyrimidine_dimer)_activity","termid":"PBO:0027311"}


id: MONDO:1040002
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any overgrowth syndrome resulting from pathogenic gain-of-function variants in the PIK3CA gene. The variants can be germline or somatic","definition_xrefs":["PMID:25557259","PMID:23946963","PMID:23592320"],"direct_ancestors":[{"relation_name":"is_a","term_name":"overgrowth syndrome","termid":"MONDO:0019716"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PIK3CA-related overgrowth spectrum","secondary_identifiers":["UMLS:C4728213","MEDGEN:1790024"],"synonyms":[{"name":"overgrowth syndrome and/or cerebral malformations due to abnormalities in MTOR pathway genes","type":"broad"}],"termid":"MONDO:1040002","xrefs":{"Monarch":{"xref_id":"1040002"}}}


id: MONDO:0018658
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"19p13.3 microduplication syndrome is a rare, genetic, syndromic intellectual disability characterized by intrauterine growth retardation, microcephaly, hypotonia, motor and neurodevelopmental delay, speech delay, intellectual disability, and mild dysmorphic features.","definition_xrefs":["Orphanet:447980"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"partial duplication of the short arm of chromosome 19","termid":"MONDO:0018659"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"19p13.3 microduplication syndrome","secondary_identifiers":["MEDGEN:1807189","UMLS:C5679996","GARD:21875"],"synonyms":[{"name":"dup(19)(p13.13)","type":"exact"}],"termid":"MONDO:0018658","xrefs":{"Monarch":{"xref_id":"0018658"}}}


id: PR:O14176
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- usp104 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14176"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-processing protein prp40 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4D7.13","synonyms":[{"name":"Spom972h-usp104","type":"exact"}],"termid":"PR:O14176"}


id: GO:2000857
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mineralocorticoid secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of corticosteroid hormone secretion","termid":"GO:2000848"},{"relation_name":"is_a","term_name":"regulation of mineralocorticoid secretion","termid":"GO:2000855"},{"relation_name":"positively_regulates","term_name":"mineralocorticoid secretion","termid":"GO:0035931"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0006810"],"is_obsolete":false,"name":"positive regulation of mineralocorticoid secretion","termid":"GO:2000857"}


id: GO:0048406
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to nerve growth factor (NGF).","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurotrophin binding","termid":"GO:0043121"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"nerve growth factor binding","synonyms":[{"name":"NGF binding","type":"exact"},{"name":"beta-nerve growth factor binding","type":"exact"},{"name":"neurotrophin TRKA receptor activity","type":"related"}],"termid":"GO:0048406"}


id: PBO:0046065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 3 subunit K","termid":"PBO:0046065"}


id: MONDO:0009840
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Partington-Anderson syndrome","secondary_identifiers":["UMLS:C1850075","MESH:C536299","OMIM:260555","Orphanet:2829","MEDGEN:376699"],"synonyms":[{"name":"Partington-Anderson syndrome","type":"exact"}],"termid":"MONDO:0009840","xrefs":{"Monarch":{"xref_id":"0009840"}}}


id: GO:1902256
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of apoptotic process involved in outflow tract morphogenesis.","definition_xrefs":["GOC:dph","PMID:16839542","GOC:TermGenie","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic process involved in morphogenesis","termid":"GO:1902337"},{"relation_name":"regulates","term_name":"apoptotic process involved in outflow tract morphogenesis","termid":"GO:0003275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of apoptotic process involved in outflow tract morphogenesis","synonyms":[{"name":"regulation of apoptosis involved in outflow tract morphogenesis","type":"narrow"}],"termid":"GO:1902256"}


id: GO:0060464
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of a lung lobe from unspecified parts. This process begins with the specific processes that contribute to the appearance of the lobe and ends when the structural rudiment is recognizable. A lung lobe is a projection that extends from the lung.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"lung lobe morphogenesis","termid":"GO:0060463"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lung lobe formation","termid":"GO:0060464"}


id: GO:0055044
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The interconnected cell membranes and intracellular regions of a plant. The interconnections occur via the plasmodesmata.","definition_xrefs":["GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"symplast","secondary_identifiers":["Wikipedia:Symplast"],"termid":"GO:0055044"}


id: PBO:0029696
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_RNA_polymerase_II_core_promoter_proximal_region_sequence-specific_DNA_binding","termid":"PBO:0029696"}


id: MONDO:0008603
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any isolated trigonocephaly in which the cause of the disease is a mutation in the FGFR1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isolated trigonocephaly","termid":"MONDO:0018065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"trigonocephaly 1","secondary_identifiers":["MEDGEN:98473","GARD:18558","UMLS:C0432122","OMIM:190440"],"synonyms":[{"name":"FGFR1 isolated trigonocephaly","type":"exact"},{"name":"TRIGNO1","type":"related"},{"name":"craniosynostosis, metopic","type":"related"},{"name":"isolated trigonocephaly caused by mutation in FGFR1","type":"exact"},{"name":"trigonocephaly 1","type":"exact"},{"name":"trigonocephaly type 1","type":"exact"}],"termid":"MONDO:0008603","xrefs":{"Monarch":{"xref_id":"0008603"}}}


id: PBO:0042593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CMT1A duplicated region transcript 7","termid":"PBO:0042593"}


id: PBO:0016579
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complements S. cerevisiae RPB6","termid":"PBO:0016579"}


id: PBO:0067548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 697, pseudogene","termid":"PBO:0067548"}


id: GO:0008499
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an N-acetyl-beta-D-glucosaminyl derivative + UDP-alpha-D-galactose = a beta-D-galactosyl-(1->3)-N-acetyl-beta-D-glucosaminyl derivative + H+ + UDP.","definition_xrefs":["RHEA:53432","PMID:10212226"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-galactosyltransferase activity","termid":"GO:0035250"},{"relation_name":"is_a","term_name":"beta-1,3-galactosyltransferase activity","termid":"GO:0048531"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"N-acetyl-beta-D-glucosaminide beta-(1,3)-galactosyltransferase activity","secondary_identifiers":["Reactome:R-HSA-914010","EC:2.4.1.86","MetaCyc:2.4.1.86-RXN","Reactome:R-HSA-9603989","Reactome:R-HSA-9845516"],"synonyms":[{"name":"UDP-Gal:beta-GlcNAc beta-1,3-galactosyltransferase activity","type":"exact"},{"name":"UDP-galactose beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity","type":"exact"},{"name":"UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity","type":"exact"},{"name":"beta-1,3-GalTase activity","type":"broad"},{"name":"beta3Gal-Ts activity","type":"broad"}],"termid":"GO:0008499"}


id: PBO:0059620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP8 pseudogene 1","termid":"PBO:0059620"}


id: PBO:0068584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 35, pseudogene","termid":"PBO:0068584"}


id: PBO:0002829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element","termid":"PBO:0002829"}


id: GO:0016532
data:
  {"annotated_genes":["SJAG_04403"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94912],"is_not":false,"summary":null,"term":"GO:0016532"}]},"cv_name":"molecular_function","definition":"A copper chaperone activity that specifically delivers copper to the Cu-Zn superoxide dismutase, to activate superoxide dismutase activity.","definition_xrefs":["PMID:9295278","GOC:vw","PMID:15064408"],"direct_ancestors":[{"relation_name":"is_a","term_name":"copper chaperone activity","termid":"GO:0016531"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04403":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140104"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0140104"],"is_obsolete":false,"name":"superoxide dismutase copper chaperone activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"superoxide dismutase copper carrier activity","type":"exact"}],"termid":"GO:0016532","terms_by_termid":{"GO:0016532":null}}


id: PR:000050543
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GTP-binding protein gtr1 (Schizosaccharomyces pombe) that is non-covalently bound to GTP.","definition_xrefs":["PMID:33534698","PomBase:VW","PPRO:DAN","PMID:27227887"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"},{"relation_name":"is_a","term_name":"GTP-binding protein gtr1 (Schizosaccharomyces pombe)","termid":"PR:000050541"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gtr1/GTP+","pombase_gene_id":"SPBC337.13c","synonyms":[{"name":"PomBase_original_PRO_term_name: GTP-binding protein gtr1, GTP-bound form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-gtr1/GTP+","type":"exact"},{"name":"gtr1/GTP+","type":"exact"},{"name":"Gtr1/GTP+","type":"exact"}],"termid":"PR:000050543"}


id: GO:0033611
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of oxalate, the organic acid ethanedioate.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxalate metabolic process","termid":"GO:0033609"},{"relation_name":"is_a","term_name":"dicarboxylic acid catabolic process","termid":"GO:0043649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"oxalate catabolic process","synonyms":[{"name":"ethanedioate catabolic process","type":"exact"},{"name":"ethanedioic acid catabolic process","type":"exact"},{"name":"oxalate breakdown","type":"exact"},{"name":"oxalate catabolism","type":"exact"},{"name":"oxalate degradation","type":"exact"},{"name":"oxalic acid catabolic process","type":"exact"}],"termid":"GO:0033611"}


id: GO:1900469
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of phosphatidylserine biosynthetic process.","definition_xrefs":["GOC:dgf","PMID:8056324","PMID:8614637","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of phospholipid biosynthetic process","termid":"GO:0071072"},{"relation_name":"is_a","term_name":"negative regulation of phosphatidylserine metabolic process","termid":"GO:0150180"},{"relation_name":"is_a","term_name":"regulation of phosphatidylserine biosynthetic process","termid":"GO:1900468"},{"relation_name":"negatively_regulates","term_name":"phosphatidylserine biosynthetic process","termid":"GO:0006659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"negative regulation of phosphatidylserine biosynthetic process","synonyms":[{"name":"down regulation of phosphatidylserine anabolism","type":"exact"},{"name":"down regulation of phosphatidylserine biosynthesis","type":"exact"},{"name":"down regulation of phosphatidylserine biosynthetic process","type":"exact"},{"name":"down regulation of phosphatidylserine formation","type":"exact"},{"name":"down regulation of phosphatidylserine synthesis","type":"exact"},{"name":"down-regulation of phosphatidylserine anabolism","type":"exact"},{"name":"down-regulation of phosphatidylserine biosynthesis","type":"exact"},{"name":"down-regulation of phosphatidylserine biosynthetic process","type":"exact"},{"name":"down-regulation of phosphatidylserine formation","type":"exact"},{"name":"down-regulation of phosphatidylserine synthesis","type":"exact"},{"name":"downregulation of phosphatidylserine anabolism","type":"exact"},{"name":"downregulation of phosphatidylserine biosynthesis","type":"exact"},{"name":"downregulation of phosphatidylserine biosynthetic process","type":"exact"},{"name":"downregulation of phosphatidylserine formation","type":"exact"},{"name":"downregulation of phosphatidylserine synthesis","type":"exact"},{"name":"inhibition of phosphatidylserine anabolism","type":"exact"},{"name":"inhibition of phosphatidylserine biosynthesis","type":"exact"},{"name":"inhibition of phosphatidylserine biosynthetic process","type":"narrow"},{"name":"inhibition of phosphatidylserine formation","type":"exact"},{"name":"inhibition of phosphatidylserine synthesis","type":"exact"},{"name":"negative regulation of phosphatidylserine anabolism","type":"exact"},{"name":"negative regulation of phosphatidylserine biosynthesis","type":"exact"},{"name":"negative regulation of phosphatidylserine formation","type":"exact"},{"name":"negative regulation of phosphatidylserine synthesis","type":"exact"}],"termid":"GO:1900469"}


id: PBO:0041235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 1 open reading frame 74","termid":"PBO:0041235"}


id: PBO:0043857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium release activated channel regulator 2B","termid":"PBO:0043857"}


id: PBO:0086801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; YCL001W-A gene has similarity to DOM34 and is present in a region duplicated between chromosomes XIV and III","termid":"PBO:0086801"}


id: MONDO:0009352
data:
  {"annotated_genes":["SJAG_00582"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87062],"is_not":false,"summary":null,"term":"MONDO:0009352"}]},"cv_name":"mondo","definition":"Classical homocystinuria due to cystathionine beta-synthase (CbS) deficiency is characterized by the multiple involvement of the eye, skeleton, central nervous system, and vascular system.","definition_xrefs":["Orphanet:394"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lens disorder","termid":"MONDO:0001176"},{"relation_name":"is_a","term_name":"homocystinuria","termid":"MONDO:0004737"},{"relation_name":"is_a","term_name":"developmental anomaly of metabolic origin","termid":"MONDO:0015327"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00582":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066","MONDO:0005328"],"is_obsolete":false,"name":"classic homocystinuria","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NORD:1249","GARD:6667","NANDO:1201039","OMIM:236200","SCTID:24308003","UMLS:C0751202","MEDGEN:199606","MedDRA:10071093"],"synonyms":[{"name":"CBS deficiency","type":"related"},{"name":"Homocystinuria due to Cystathionine Beta-Synthase Deficiency","type":"exact"},{"name":"classic homocystinuria","type":"exact"},{"name":"cystathionine beta-synthase deficiency","type":"exact"},{"name":"homocystinuria due to CBS deficiency","type":"related"},{"name":"homocystinuria due to cystathionine beta-synthase deficiency","type":"exact"},{"name":"homocystinuria with or without response to pyridoxine","type":"related"},{"name":"homocystinuria, B6-responsive and nonresponsive types","type":"exact"},{"name":"hyperhomocysteinemia, thrombotic, CBS-related","type":"related"},{"name":"thrombosis, hyperhomocysteinemic","type":"exact"}],"termid":"MONDO:0009352","terms_by_termid":{"MONDO:0009352":null},"xrefs":{"Monarch":{"xref_id":"0009352"}}}


id: GO:0004253
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage of the Leu-Leu bond in synthetic tetradecapeptide renin substrate, producing angiotensin I, but not active on natural angiotensinogen. Also hydrolyzes BZ-Arg-para-nitroanilide.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete gamma-renin activity (obsolete GO:0004253)","synonyms":[{"name":"gamma-renin activity","type":"exact"}],"termid":"GO:0004253"}


id: MONDO:0014876
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive non-syndromic intellectual disability in which the cause of the disease is a mutation in the TNIK gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive non-syndromic intellectual disability","termid":"MONDO:0019502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005066","MONDO:0006025"],"is_obsolete":false,"name":"intellectual disability, autosomal recessive 54","secondary_identifiers":["MEDGEN:934722","UMLS:C4310755","DOID:0081216","GARD:22573","OMIM:617028"],"synonyms":[{"name":"MRT54","type":"exact"},{"name":"TNIK autosomal recessive non-syndromic intellectual disability","type":"exact"},{"name":"autosomal recessive non-syndromic intellectual disability caused by mutation in TNIK","type":"exact"},{"name":"intellectual developmental disorder 54","type":"exact"},{"name":"intellectual disability, autosomal recessive 54","type":"exact"},{"name":"intellectual disability, autosomal recessive type 54","type":"exact"},{"name":"mental retardation, autosomal recessive 54","type":"exact"},{"name":"mental retardation, autosomal recessive type 54","type":"exact"}],"termid":"MONDO:0014876","xrefs":{"Monarch":{"xref_id":"0014876"}}}


id: MONDO:0005751
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute, febrile, infectious disease generally occurring in epidemics. It is usually caused by coxsackieviruses B and sometimes by coxsackieviruses A; echoviruses; or other enteroviruses.","definition_xrefs":["MESH:D011000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral infectious disease","termid":"MONDO:0005108"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epidemic pleurodynia","secondary_identifiers":["SCTID:83264000","UMLS:C0032238","DOID:10882","ICD10CM:B33.0","ICD9:074.1","MEDGEN:19355"],"synonyms":[{"name":"Bamble disease","type":"exact"},{"name":"Bornholm disease","type":"exact"},{"name":"devil's grip","type":"exact"},{"name":"epidemic myalgia","type":"exact"},{"name":"epidemic pleurisy","type":"exact"},{"name":"epidemic, myositis","type":"exact"}],"termid":"MONDO:0005751","xrefs":{"Monarch":{"xref_id":"0005751"}}}


id: GO:0031825
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 1F serotonin receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled serotonin receptor binding","termid":"GO:0031821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"type 1F serotonin receptor binding","synonyms":[{"name":"5-hydroxytryptamine 1F receptor binding","type":"exact"},{"name":"type 1F serotonin receptor ligand","type":"narrow"}],"termid":"GO:0031825"}


id: PBO:0064046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 80","termid":"PBO:0064046"}


id: GO:0044051
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An interaction with the host organism mediated by a substance released via cytolysis of symbiont cells. Cytolysis is the rupture of cell membranes and the loss of cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["MITRE:tk"],"gene_count":0,"genotype_count":0,"name":"obsolete interaction with host via substance released by symbiont cytolysis (obsolete GO:0044051)","synonyms":[{"name":"interaction with host via substance released by cytolysis of symbiont","type":"exact"}],"termid":"GO:0044051"}


id: GO:0042560
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any compound containing pteridine (pyrazino(2,3-dipyrimidine)), e.g. pteroic acid, xanthopterin and folic acid.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"pteridine-containing compound metabolic process","termid":"GO:0042558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pteridine-containing compound catabolic process","synonyms":[{"name":"pteridine and derivative catabolic process","type":"exact"},{"name":"pteridine and derivative catabolism","type":"exact"},{"name":"pteridine-containing compound breakdown","type":"exact"},{"name":"pteridine-containing compound catabolism","type":"exact"},{"name":"pteridine-containing compound degradation","type":"exact"},{"name":"pterin catabolic process","type":"narrow"},{"name":"pterin catabolism","type":"narrow"}],"termid":"GO:0042560"}


id: PBO:0068041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 346","termid":"PBO:0068041"}


id: PBO:0084732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane transporter; transports oxaloacetate, sulfate, thiosulfate, and isopropylmalate; member of the mitochondrial carrier family","termid":"PBO:0084732"}


id: GO:0034893
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: N-nitrodimethylamine + O2 + 2 H+ + 2 e- = N-nitromethylamine + formaldehyde + H2O.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete N-nitrodimethylamine hydroxylase activity (obsolete GO:0034893)","termid":"GO:0034893"}


id: GO:0018885
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving carbon tetrachloride, a toxic, carcinogenic compound which is used as a general solvent in industrial degreasing operations. It is also used as grain fumigant and a chemical intermediate in the production of refrigerants.","definition_xrefs":["UM-BBD_pathwayID:ctc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"halogenated hydrocarbon metabolic process","termid":"GO:0042197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"carbon tetrachloride metabolic process","synonyms":[{"name":"carbon tetrachloride metabolism","type":"exact"}],"termid":"GO:0018885"}


id: PR:Q10095
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC11D3.16c gene.","definition_xrefs":["UniProtKB:Q10095","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C11D3.16c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.16c","synonyms":[{"name":"Spom972h-SPAC11D3.16c","type":"exact"}],"termid":"PR:Q10095"}


id: PBO:0030110
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_methionine_import","termid":"PBO:0030110"}


id: MONDO:0011624
data:
  {"annotated_genes":["SJAG_04263"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88360],"is_not":false,"summary":null,"term":"MONDO:0011624"}]},"cv_name":"mondo","definition":"Transaldolase deficiency is an inborn error of the pentose phosphate pathway that presents in the neonatal or antenatal period with hydrops fetalis, hepatosplenomegaly, hepatic dysfunction, thrombocytopenia, anemia, and renal and cardiac abnormalities.","definition_xrefs":["Orphanet:101028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of pentose phosphate metabolism","termid":"MONDO:0019231"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04263":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005066"],"is_obsolete":false,"name":"transaldolase deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["icd11.foundation:424536994","MESH:C563207","UMLS:C1291329","SCTID:124252008","ICD9:277.6","OMIM:606003","MEDGEN:224855","GARD:10445"],"synonyms":[{"name":"Eyaid syndrome","type":"related"},{"name":"TALDO deficiency","type":"exact"},{"name":"Taldo deficiency","type":"related"},{"name":"transaldolase deficiency","type":"exact"}],"termid":"MONDO:0011624","terms_by_termid":{"MONDO:0011624":null},"xrefs":{"Monarch":{"xref_id":"0011624"}}}


id: PBO:0039965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 2 binding protein pseudogene 8","termid":"PBO:0039965"}


id: FYPO:0003909
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome occupancy is greater than normal at promoters containing CRE sites. Nucleosome occupancy measures the tendency for DNA in a given region to be packaged into nucleosomes.","definition_xrefs":["PMID:25122751","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nucleosome positioning at stress response genes","termid":"FYPO:0003812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0000641","FYPO:0001985"],"is_obsolete":false,"name":"increased nucleosome occupancy at CRE site","synonyms":[{"name":"increased nucleosome occupancy at CRE site during mitotic cell cycle","type":"related"},{"name":"increased nucleosome occupancy at CRE site during vegetative growth","type":"exact"}],"termid":"FYPO:0003909"}


id: PBO:0076805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tektin 4 pseudogene 2","termid":"PBO:0076805"}


id: GO:0009237
data:
  {"annotated_genes":["SJAG_04032","SJAG_00792","SJAG_04031","SJAG_00469"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[59554,95885,107199],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031169"},{"annotations":[95831],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905569"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving siderophores, low molecular weight Fe(III)-chelating substances made by aerobic or facultatively anaerobic bacteria, especially when growing under iron deficient conditions. The complexes of Fe(3+)-siderophores have very high stability constants and are taken up by specific transport systems by microorganisms; the subsequent release of iron requires enzymatic action.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00469":null,"SJAG_00792":null,"SJAG_04031":null,"SJAG_04032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"siderophore metabolic process","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"siderochrome metabolic process","type":"narrow"},{"name":"siderochrome metabolism","type":"narrow"},{"name":"siderophore metabolism","type":"exact"}],"termid":"GO:0009237","terms_by_termid":{"GO:0031169":null,"GO:1905569":null}}


id: GO:1901069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of guanosine-containing compounds (guanosines).","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleoside catabolic process","termid":"GO:0046130"},{"relation_name":"is_a","term_name":"guanosine-containing compound metabolic process","termid":"GO:1901068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"guanosine-containing compound catabolic process","synonyms":[{"name":"guanosine-containing compound breakdown","type":"exact"},{"name":"guanosine-containing compound catabolism","type":"exact"},{"name":"guanosine-containing compound degradation","type":"exact"},{"name":"guanosines breakdown","type":"exact"},{"name":"guanosines catabolic process","type":"exact"},{"name":"guanosines catabolism","type":"exact"},{"name":"guanosines degradation","type":"exact"}],"termid":"GO:1901069"}


id: GO:0030855
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium.","definition_xrefs":["PMID:11839751","GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"epithelium development","termid":"GO:0060429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell differentiation","termid":"GO:0030855"}


id: PBO:0087424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit A of the V1 peripheral membrane domain of V-ATPase; protein precursor undergoes self-catalyzed splicing to yield the extein Tfp1p and the intein Vde (PI-SceI), which is a site-specific endonuclease; the V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase) has eight subunits; involved in methionine restriction extension of chronological lifespan in an autophagy-dependent manner","termid":"PBO:0087424"}


id: PBO:0004464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase regulator (predicted)","termid":"PBO:0004464"}


id: MONDO:0022460
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete anophthalmia cleft lip palate hypothalamic disorder (obsolete MONDO:0022460)","termid":"MONDO:0022460","xrefs":{"Monarch":{"xref_id":"0022460"}}}


id: GO:0032477
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A homodimeric complex that possesses polyprenyl diphosphate synthase activity involved in the synthesis of the isoprenoid chain of ubiquinone whose length varies between organisms.","definition_xrefs":["PMID:14519123"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyprenyl diphosphate synthase complex","termid":"GO:0032476"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"homodimeric polyprenyl diphosphate synthase complex","synonyms":[{"name":"homodimeric decaprenyl diphosphate synthase complex","type":"narrow"}],"termid":"GO:0032477"}


id: GO:1905401
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of activated CD4-positive, alpha-beta T cell apoptotic process.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:24187568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of T cell apoptotic process","termid":"GO:0070234"},{"relation_name":"is_a","term_name":"regulation of activated CD4-positive, alpha-beta T cell apoptotic process","termid":"GO:1905399"},{"relation_name":"positively_regulates","term_name":"activated CD4-positive, alpha-beta T cell apoptotic process","termid":"GO:1905398"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of activated CD4-positive, alpha-beta T cell apoptotic process","synonyms":[{"name":"activation of activated CD4-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"activation of activated CD4-positive, alpha-beta T cell apoptotic process","type":"narrow"},{"name":"activation of activated CD4-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"activation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process","type":"narrow"},{"name":"activation of activated CD4-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"activation of activated CD4-positive, alpha-beta T-cell apoptotic process","type":"narrow"},{"name":"activation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"activation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process","type":"narrow"},{"name":"positive regulation of activated CD4-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"positive regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"positive regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"positive regulation of activated CD4-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"positive regulation of activated CD4-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"positive regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"positive regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"up regulation of activated CD4-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"up regulation of activated CD4-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"up regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"up regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"up regulation of activated CD4-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"up regulation of activated CD4-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"up regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"up regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"up-regulation of activated CD4-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"up-regulation of activated CD4-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"up-regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"up-regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"up-regulation of activated CD4-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"up-regulation of activated CD4-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"up-regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"up-regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"upregulation of activated CD4-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"upregulation of activated CD4-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"upregulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"upregulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"upregulation of activated CD4-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"upregulation of activated CD4-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"upregulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"upregulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"}],"termid":"GO:1905401"}


id: MONDO:1011603
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Type 2 diabetes mellitus that occurs in crab-eating macaque.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"type 2 diabetes mellitus, non-human animal","termid":"MONDO:1011402"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"type 2 diabetes mellitus, crab-eating macaque","secondary_identifiers":["OMIA:000284-9541"],"termid":"MONDO:1011603","xrefs":{"Monarch":{"xref_id":"1011603"}}}


id: PBO:0059227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maestro heat like repeat family member 8","termid":"PBO:0059227"}


id: GO:0140505
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of microlipophagy, the microautophagy-mediated direct internalization of lipid droplets into a lysosome-like vacuole during nutrient depletion.","definition_xrefs":["PMID:29601311","PMID:28394250"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of autophagy","termid":"GO:0010506"},{"relation_name":"regulates","term_name":"microlipophagy","termid":"GO:0140504"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006914"}],"interesting_parent_ids":["GO:0006914","GO:0008150"],"is_obsolete":false,"name":"regulation of microlipophagy","termid":"GO:0140505"}


id: PBO:0090767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II associated protein","termid":"PBO:0090767"}


id: MOD:01427
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because redundant and identical to MOD:00819. Remap to MOD:00819.","definition_xrefs":["PubMed:18688235"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:01427 2-aminobutanoic acid (Abu) (obsolete MOD:01427)","synonyms":[{"name":"Abu","type":"exact"}],"termid":"MOD:01427"}


id: PBO:0070770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12","termid":"PBO:0070770"}


id: MONDO:0007534
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Beckwith-Wiedemann syndrome (BWS) is a genetic disorder characterized by overgrowth, tumor predisposition and congenital malformations.","definition_xrefs":["Orphanet:116"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"macroglossia","termid":"MONDO:0015496"},{"relation_name":"excluded_subClassOf","term_name":"obsolete syndrome or malformation associated with head and neck malformations (obsolete MONDO:0015501)","termid":"MONDO:0015501"},{"relation_name":"excluded_subClassOf","term_name":"obsolete syndromic renal or urinary tract malformation (obsolete MONDO:0019721)","termid":"MONDO:0019721"},{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"},{"relation_name":"is_a","term_name":"overgrowth syndrome","termid":"MONDO:0019716"},{"relation_name":"is_a","term_name":"familial hypertrophic cardiomyopathy","termid":"MONDO:0024573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"Beckwith-Wiedemann syndrome","secondary_identifiers":["DOID:5572","SCTID:81780002","UMLS:C0004903","GARD:3343","icd11.foundation:803086260","MedDRA:10050344","MEDGEN:2562","NANDO:2200959","ICD9:759.89","NORD:845","OMIM:130650","MESH:D001506","NCIT:C34415"],"synonyms":[{"name":"BWS","type":"exact"},{"name":"Beckwith-Wiedemann syndrome","type":"exact"},{"name":"Beckwith-Wiedemann syndrome chromosome region","type":"related"},{"name":"EMG syndrome","type":"related"},{"name":"Wiedemann-Beckwith syndrome","type":"exact"},{"name":"Wiedemann-Beckwith syndrome (WBS)","type":"related"},{"name":"exomphalos macroglossia gigantism syndrome","type":"related"},{"name":"exomphalos-macroglossia-gigantism syndrome","type":"exact"}],"termid":"MONDO:0007534","xrefs":{"Monarch":{"xref_id":"0007534"}}}


id: GO:0008619
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate.","definition_xrefs":["PMID:12893813","EC:3.6.1.47"],"gene_count":0,"genotype_count":0,"name":"obsolete RHEB small monomeric GTPase activity (obsolete GO:0008619)","synonyms":[{"name":"RHEB small monomeric GTPase activity","type":"exact"}],"termid":"GO:0008619"}


id: PBO:0001699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type ATPase V1 subunit C (predicted)","termid":"PBO:0001699"}


id: MONDO:0003972
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from epithelial cells of the body of stomach.","direct_ancestors":[{"relation_name":"is_a","term_name":"gastric carcinoma","termid":"MONDO:0004950"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"gastric body carcinoma","secondary_identifiers":["NCIT:C8399","UMLS:C0345804","DOID:6705","SCTID:254557000","MEDGEN:87515"],"synonyms":[{"name":"body of stomach carcinoma","type":"exact"},{"name":"cancer of body of stomach","type":"exact"},{"name":"cancer of gastric body","type":"exact"},{"name":"cancer of the body of the stomach","type":"exact"},{"name":"cancer of the gastric body","type":"exact"},{"name":"carcinoma of body of stomach","type":"exact"},{"name":"carcinoma of gastric body","type":"exact"},{"name":"carcinoma of the body of the stomach","type":"exact"},{"name":"carcinoma of the gastric body","type":"exact"},{"name":"gastric body (stomach) cancer","type":"exact"},{"name":"gastric body cancer","type":"exact"},{"name":"gastric body carcinoma","type":"exact"}],"termid":"MONDO:0003972","xrefs":{"Monarch":{"xref_id":"0003972"}}}


id: MONDO:0007557
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epidermolysis bullosa with congenital localized absence of skin and deformity of nails","secondary_identifiers":["MEDGEN:82797","MESH:C562638","OMIM:132000","UMLS:C0268371","DOID:0111347","ICD9:757.39","SCTID:2689001"],"synonyms":[{"name":"EBD, Bart type","type":"exact"},{"name":"epidermolysis bullosa dystrophica, Bart type","type":"related"},{"name":"epidermolysis bullosa with congenital localized absence of skin and deformity of nails","type":"exact"}],"termid":"MONDO:0007557","xrefs":{"Monarch":{"xref_id":"0007557"}}}


id: PBO:0047230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 230 member B","termid":"PBO:0047230"}


id: MONDO:0003985
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lymphoma that affects the structures of the chest wall. The majority of cases are diffuse large B-cell lymphomas.","definition_xrefs":["NCIT:C6712"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphoma","termid":"MONDO:0005062"},{"relation_name":"is_a","term_name":"malignant neoplasm of chest wall","termid":"MONDO:0021323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005570"],"is_obsolete":false,"name":"chest wall lymphoma","secondary_identifiers":["MEDGEN:232053","DOID:6758","UMLS:C1332933"],"synonyms":[{"name":"chest wall cancer","type":"broad"},{"name":"chest wall lymphoma","type":"exact"},{"name":"lymphoma of chest wall","type":"exact"},{"name":"lymphoma of the chest wall","type":"exact"},{"name":"malignant tumour of chest wall","type":"related"},{"name":"primary chest wall lymphoma","type":"exact"}],"termid":"MONDO:0003985","xrefs":{"Monarch":{"xref_id":"0003985"}}}


id: GO:0031741
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type B gastrin/cholecystokinin receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cholecystokinin receptor binding","termid":"GO:0031739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"type B gastrin/cholecystokinin receptor binding","synonyms":[{"name":"type B gastrin/cholecystokinin receptor ligand","type":"narrow"}],"termid":"GO:0031741"}


id: GO:0014802
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of sarcoplasmic reticulum devoted to calcium ion storage and calcium ion release.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum subcompartment","termid":"GO:0098827"},{"relation_name":"part_of","term_name":"sarcoplasmic reticulum","termid":"GO:0016529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005783"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005783"],"is_obsolete":false,"name":"terminal cisterna","secondary_identifiers":["Wikipedia:Terminal_cisterna"],"termid":"GO:0014802"}


id: PBO:0052951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinase suppressor of ras 2","termid":"PBO:0052951"}


id: FYPO:0007396
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of heme into the cell occurs to a lower extent than normal.","definition_xrefs":["GO:0140420","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased heme import","synonyms":[{"name":"decreased haem import","type":"exact"},{"name":"decreased heme import during mitotic cell cycle","type":"related"},{"name":"decreased heme import during vegetative growth","type":"exact"},{"name":"decreased heme import into cell","type":"exact"},{"name":"reduced heme import","type":"exact"}],"termid":"FYPO:0007396"}


id: PBO:0042625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain Y-linked 1B","termid":"PBO:0042625"}


id: MONDO:0009828
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palant cleft palate syndrome","secondary_identifiers":["MESH:C538102","UMLS:C1850102","MEDGEN:337971","OMIM:260150"],"synonyms":[{"name":"Palant cleft palate syndrome","type":"exact"},{"name":"unusual facies, cleft palate, intellectual disability, and limb abnormalities","type":"related"},{"name":"unusual facies, cleft palate, mental retardation, and limb abnormalities","type":"related"}],"termid":"MONDO:0009828","xrefs":{"Monarch":{"xref_id":"0009828"}}}


id: GO:1900663
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of emericellamide A biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of emericellamide biosynthetic process","termid":"GO:1900660"},{"relation_name":"is_a","term_name":"regulation of emericellamide A biosynthetic process","termid":"GO:1900661"},{"relation_name":"positively_regulates","term_name":"emericellamide A biosynthetic process","termid":"GO:1900617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"positively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0019748","GO:0006629"],"is_obsolete":false,"name":"positive regulation of emericellamide A biosynthetic process","synonyms":[{"name":"activation of emericellamide A anabolism","type":"exact"},{"name":"activation of emericellamide A biosynthesis","type":"exact"},{"name":"activation of emericellamide A biosynthetic process","type":"narrow"},{"name":"activation of emericellamide A formation","type":"exact"},{"name":"activation of emericellamide A synthesis","type":"exact"},{"name":"positive regulation of emericellamide A anabolism","type":"exact"},{"name":"positive regulation of emericellamide A biosynthesis","type":"exact"},{"name":"positive regulation of emericellamide A formation","type":"exact"},{"name":"positive regulation of emericellamide A synthesis","type":"exact"},{"name":"up regulation of emericellamide A anabolism","type":"exact"},{"name":"up regulation of emericellamide A biosynthesis","type":"exact"},{"name":"up regulation of emericellamide A biosynthetic process","type":"exact"},{"name":"up regulation of emericellamide A formation","type":"exact"},{"name":"up regulation of emericellamide A synthesis","type":"exact"},{"name":"up-regulation of emericellamide A anabolism","type":"exact"},{"name":"up-regulation of emericellamide A biosynthesis","type":"exact"},{"name":"up-regulation of emericellamide A biosynthetic process","type":"exact"},{"name":"up-regulation of emericellamide A formation","type":"exact"},{"name":"up-regulation of emericellamide A synthesis","type":"exact"},{"name":"upregulation of emericellamide A anabolism","type":"exact"},{"name":"upregulation of emericellamide A biosynthesis","type":"exact"},{"name":"upregulation of emericellamide A biosynthetic process","type":"exact"},{"name":"upregulation of emericellamide A formation","type":"exact"},{"name":"upregulation of emericellamide A synthesis","type":"exact"}],"termid":"GO:1900663"}


id: PBO:0056777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase like 26","termid":"PBO:0056777"}


id: PBO:0030167
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-spore_lysis","termid":"PBO:0030167"}


id: PBO:0074992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 115-3","termid":"PBO:0074992"}


id: PBO:0074984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 114-26","termid":"PBO:0074984"}


id: PBO:0001760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Faf1 (predicted)","termid":"PBO:0001760"}


id: SO:1000038
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A duplication that occurred within a chromosome.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_part","term_name":"duplication","termid":"SO:1000035"},{"relation_name":"is_a","term_name":"intrachromosomal_mutation","termid":"SO:1000028"},{"relation_name":"is_a","term_name":"chromosomal_duplication","termid":"SO:1000037"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intrachromosomal_duplication","synonyms":[{"name":"intrachromosomal duplication","type":"exact"}],"termid":"SO:1000038"}


id: SO:0002092
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A UTR variant of exonic sequence of the 5' UTR.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5_prime_UTR_variant","termid":"SO:0001623"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5_prime_UTR_exon_variant","synonyms":[{"name":"5 prime UTR exon variant","type":"exact"}],"termid":"SO:0002092"}


id: PR:P05764
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 40S ribosomal protein S21 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03124","PANTHER:PTHR10442:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S21 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC18E5.06","secondary_identifiers":["UniProtKB:P05764"],"synonyms":[{"name":"S28 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-RPS21","type":"exact"}],"termid":"PR:P05764"}


id: MONDO:1010841
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Gangliosidosis that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gangliosidosis, non-human animal","termid":"MONDO:1010167"},{"relation_name":"is_a","term_name":"lysosomal storage disease, domestic cat","termid":"MONDO:1010861"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gangliosidosis, domestic cat","secondary_identifiers":["OMIA:000401-9685"],"termid":"MONDO:1010841","xrefs":{"Monarch":{"xref_id":"1010841"}}}


id: SO:0002287
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Dictyostelium intermediate repeat sequence (DIRS) retrotransposons are members of the YR_retrotransposon (SO:0002286) superfamily with the following protein domains: RT, RH, YR, and MT. RT is a reverse transcriptase. RH is RNAse H. YR is tyrosine recombinase. MT is DNA N-6-adenine-methyltransferase.","definition_xrefs":["PMID:24086727"],"direct_ancestors":[{"relation_name":"is_a","term_name":"YR_retrotransposon","termid":"SO:0002286"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DIRS_YR_retrotransposon","synonyms":[{"name":"DIRS YR retrotransposon","type":"exact"},{"name":"DIRS retrotransposon","type":"exact"},{"name":"RYD retrotransposon","type":"exact"}],"termid":"SO:0002287"}


id: PBO:0057329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 520d","termid":"PBO:0057329"}


id: GO:0021638
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the trigeminal nerve. This process pertains to the initial formation of a structure from unspecified parts. The trigeminal nerve is composed of three large branches. They are the ophthalmic (V1, sensory), maxillary (V2, sensory) and mandibular (V3, motor and sensory) branches. The sensory ophthalmic branch travels through the superior orbital fissure and passes through the orbit to reach the skin of the forehead and top of the head. The maxillary nerve contains sensory branches that reach the pterygopalatine fossa via the inferior orbital fissure (face, cheek and upper teeth) and pterygopalatine canal (soft and hard palate, nasal cavity and pharynx). The motor part of the mandibular branch is distributed to the muscles of mastication, the mylohyoid muscle and the anterior belly of the digastric. The mandibular nerve also innervates the tensor veli palatini and tensor tympani muscles. The sensory part of the mandibular nerve is composed of branches that carry general sensory information from the mucous membranes of the mouth and cheek, anterior two-thirds of the tongue, lower teeth, skin of the lower jaw, side of the head and scalp and meninges of the anterior and middle cranial fossae.","definition_xrefs":["GOC:cls","GOC:dph","GOC:jid","GOC:dgh","ISBN:0838580343","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve formation","termid":"GO:0021603"},{"relation_name":"part_of","term_name":"trigeminal nerve morphogenesis","termid":"GO:0021636"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trigeminal nerve formation","synonyms":[{"name":"CN V biosynthesis","type":"related"},{"name":"CN V formation","type":"related"}],"termid":"GO:0021638"}


id: PBO:0003812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Nop8 (predicted)","termid":"PBO:0003812"}


id: PBO:0012555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"origin recognition complex subunit Orp3","termid":"PBO:0012555"}


id: MOD:02033
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod N-linked glycosylation, dHex Hex(5) HexNAc(3)","definition_xrefs":["PubMed:33135055","Unimod:1484"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"},{"relation_name":"is_a","term_name":"complex glycosylation","termid":"MOD:00725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"dHex1Hex5HexNAc3 N4-glycosylated asparagine","synonyms":[{"name":"dHex Hex(5) HexNAc(3)","type":"related"}],"termid":"MOD:02033"}


id: PBO:0029586
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_RNA_binding","termid":"PBO:0029586"}


id: PBO:0030773
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_hydroxyurea","termid":"PBO:0030773"}


id: GO:0052637
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-18:3-3-16:0-phosphatidylglycerol = 1-18:3-3-trans-16:1-phosphatidylglycerol + 2 H+. This reaction is the formation of a trans double bond between carbon 3 and carbon 4 (counting from the carboxyl end) of palmitic acid, which is specifically esterified to the sn-2 glyceryl carbon of phosphatidylglycerol.","definition_xrefs":["PMID:19682287","GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity (obsolete GO:0052637)","termid":"GO:0052637"}


id: PBO:0002126
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in the current viewer tco1 gene is hidden behind SPNCRNA.600","termid":"PBO:0002126"}


id: PBO:0050285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H6 family homeobox 2","termid":"PBO:0050285"}


id: SO:0002144
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A histone 2AZ modification where the modification is the acetylation of the residue.","definition_xrefs":["PMID:19385636","PMID:24316985","PMID:27087541"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_2A_acetylation_site","termid":"SO:0002142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"histone_2AZ_acetylation_site","synonyms":[{"name":"H2A.Zac","type":"exact"},{"name":"H2AZac","type":"exact"},{"name":"histone 2AZ acetylation site","type":"exact"}],"termid":"SO:0002144"}


id: SO:0000114
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A methylated deoxy-cytosine.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated_DNA_base_feature","termid":"SO:0000306"},{"relation_name":"is_a","term_name":"modified_cytosine","termid":"SO:0001963"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylated_cytosine","synonyms":[{"name":"methylated C","type":"exact"},{"name":"methylated cytosine","type":"exact"},{"name":"methylated cytosine base","type":"exact"},{"name":"methylated cytosine residue","type":"exact"},{"name":"methylated_C","type":"exact"}],"termid":"SO:0000114"}


id: PBO:0047284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FA complementation group I","termid":"PBO:0047284"}


id: PBO:0003616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial glutathione reductase Pgr1","termid":"PBO:0003616"}


id: GO:1903823
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Single strand break repair that takes place in a telomere.","definition_xrefs":["PMID:24374808","GO_REF:0000062","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"single strand break repair","termid":"GO:0000012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0006281"],"is_obsolete":false,"name":"telomere single strand break repair","synonyms":[{"name":"single strand break repair in telomere","type":"exact"},{"name":"telomere SSBR","type":"related"},{"name":"telomere single-strand break repair","type":"exact"},{"name":"telomeric single strand break repair","type":"exact"}],"termid":"GO:1903823"}


id: GO:0032277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of a gonadotropin.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gonadotropin secretion","termid":"GO:0032276"},{"relation_name":"is_a","term_name":"negative regulation of hormone secretion","termid":"GO:0046888"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"negatively_regulates","term_name":"gonadotropin secretion","termid":"GO:0032274"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of gonadotropin secretion","synonyms":[{"name":"down regulation of gonadotropin secretion","type":"exact"},{"name":"down-regulation of gonadotropin secretion","type":"exact"},{"name":"downregulation of gonadotropin secretion","type":"exact"},{"name":"inhibition of gonadotropin secretion","type":"narrow"},{"name":"negative regulation of gonadotrophin secretion","type":"exact"}],"termid":"GO:0032277"}


id: MONDO:0001482
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A myeloid or more commonly lymphoid leukemia (acute or chronic) affecting the testis. Microscopically, there is interstitial infiltration of the testis by leukemic cells. Acute lymphoblastic leukemia with testicular involvement is not uncommon in boys. Sometimes (up to 10% of the cases), testicular involvement may be the initial manifestation of relapsed acute lymphoblastic leukemia. --03","definition_xrefs":["NCIT:C9277"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukemia","termid":"MONDO:0005059"},{"relation_name":"is_a","term_name":"testicular cancer","termid":"MONDO:0005447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005570"],"is_obsolete":false,"name":"testicular leukemia","secondary_identifiers":["MEDGEN:234941","UMLS:C1336711","DOID:12286"],"synonyms":[{"name":"testicular leukemia","type":"exact"}],"termid":"MONDO:0001482","xrefs":{"Monarch":{"xref_id":"0001482"}}}


id: MONDO:0044221
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete blood group--lutheran inhibitor (obsolete MONDO:0044221)","secondary_identifiers":["OMIM:111150"],"synonyms":[{"name":"INLU","type":"related"},{"name":"blood group--Lutheran INHIBITOR","type":"related"},{"name":"dominant 50U (A-B-) phenotype","type":"related"}],"termid":"MONDO:0044221","xrefs":{"Monarch":{"xref_id":"0044221"}}}


id: PBO:0038611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA binding domain containing 7","termid":"PBO:0038611"}


id: FYPO:0004459
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of one or more translation RNAs measured in a cell is higher than normal (i.e. higher than observed in wild-type cells) when the cell is subject to nitrogen starvation. Translation RNAs are transcribed from genes whose products are involved in translation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during nitrogen starvation","termid":"FYPO:0002020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased level of translation gene mRNA during nitrogen starvation","synonyms":[{"name":"increased level of translation gene RNA during nitrogen starvation","type":"exact"},{"name":"increased level of translation gene mRNA during nitrogen depletion","type":"exact"},{"name":"increased level of translation gene mRNA during nitrogen deprivation","type":"exact"},{"name":"increased level of translation gene transcripts nitrogen starvation","type":"exact"},{"name":"increased translation gene mRNA accumulation during nitrogen starvation","type":"related"}],"termid":"FYPO:0004459"}


id: GO:1901622
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of smoothened signaling pathway involved in dorsal/ventral neural tube patterning.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of smoothened signaling pathway","termid":"GO:0045880"},{"relation_name":"is_a","term_name":"regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","termid":"GO:1901620"},{"relation_name":"positively_regulates","term_name":"smoothened signaling pathway involved in dorsal/ventral neural tube patterning","termid":"GO:0060831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","synonyms":[{"name":"activation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"narrow"},{"name":"activation of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"narrow"},{"name":"activation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","type":"narrow"},{"name":"activation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"narrow"},{"name":"positive regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"positive regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"positive regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up-regulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up-regulation of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up-regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"up-regulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"upregulation of hedgehog signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"upregulation of hh signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"upregulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning","type":"exact"},{"name":"upregulation of smoothened signalling pathway involved in dorsal/ventral neural tube patterning","type":"exact"}],"termid":"GO:1901622"}


id: FYPO:0004623
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which astral microtubule anchoring at the mitotic spindle pole body does not occur.","definition_xrefs":["PomBase:mah","PMID:15004232"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton organization","termid":"FYPO:0000054"},{"relation_name":"is_a","term_name":"abnormal cell cycle process","termid":"FYPO:0002734"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"abolished astral microtubule anchoring at mitotic spindle pole body","synonyms":[{"name":"abolished astral microtubule anchoring at mitotic SPB","type":"exact"},{"name":"abolished astral microtubule anchoring at mitotic spindle pole body during mitotic cell cycle","type":"related"},{"name":"abolished astral microtubule anchoring at mitotic spindle pole body during vegetative growth","type":"exact"},{"name":"astral microtubule anchoring at mitotic spindle pole body abolished","type":"exact"}],"termid":"FYPO:0004623"}


id: MOD:00151
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to L-cysteinyl molybdopterin.","definition_xrefs":["PubMed:7878465","Unimod:391#C","PubMed:14527393","PubMed:9428520","RESID:AA0142"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molybdenum pterin containing modification","termid":"MOD:00744"},{"relation_name":"is_a","term_name":"phosphorus containing modified residue","termid":"MOD:00861"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-cysteine residue","termid":"MOD:02067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"L-cysteinyl molybdopterin","synonyms":[{"name":"(4R,5aR,11aR)-8-amino-2-[(2R)-2-amino-2-carboxyethyl]sulfanyl-4,5a,6,9,10,11,11a-heptahydro-4-(phosphoric acid)methyl-2,2,10-trioxo-pteridino[6,7-5,6]pyrano[3,4-4,3][1,2,5]molybdadithiolene","type":"exact"},{"name":"L-cysteinyl molybdopterin","type":"exact"},{"name":"METAL Molybdenum-pterin","type":"exact"},{"name":"MoPterCys","type":"exact"},{"name":"Molybdopterin","type":"related"},{"name":"cysteinyl Mo-molybdopterin","type":"exact"},{"name":"cysteinyl Mo-pterin","type":"exact"},{"name":"molybdoenzyme molybdenum cofactor","type":"exact"},{"name":"molybdopterin","type":"related"}],"termid":"MOD:00151"}


id: PBO:0054741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2150","termid":"PBO:0054741"}


id: GO:0032708
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-24 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of interleukin-24 production","termid":"GO:0032668"},{"relation_name":"negatively_regulates","term_name":"interleukin-24 production","termid":"GO:0032628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of interleukin-24 production","secondary_identifiers":["GO:0045532"],"synonyms":[{"name":"down regulation of interleukin-24 production","type":"exact"},{"name":"down-regulation of interleukin-24 production","type":"exact"},{"name":"downregulation of interleukin-24 production","type":"exact"},{"name":"inhibition of interleukin-24 production","type":"narrow"},{"name":"negative regulation of IL-24 production","type":"exact"},{"name":"negative regulation of interleukin-24 biosynthetic process","type":"narrow"}],"termid":"GO:0032708"}


id: PBO:0081815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 736 pseudogene 8, Y-linked","termid":"PBO:0081815"}


id: GO:0047755
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-threo-isocitrate = D-erythro-isocitrate.","definition_xrefs":["EC:5.1.2.6","RHEA:10820"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on hydroxy acids and derivatives","termid":"GO:0016856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"isocitrate epimerase activity","secondary_identifiers":["KEGG_REACTION:R02318","MetaCyc:ISOCITRATE-EPIMERASE-RXN"],"synonyms":[{"name":"(1R,2S)-1-hydroxypropane-1,2,3-tricarboxylate 1-epimerase activity","type":"related"}],"termid":"GO:0047755"}


id: MONDO:0020041
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete 46,XY disorder of sex development due to a defect in testosterone metabolism by peripheral tissue (obsolete MONDO:0020041)","secondary_identifiers":["Orphanet:98086"],"termid":"MONDO:0020041","xrefs":{"Monarch":{"xref_id":"0020041"}}}


id: PBO:0080010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP12 pseudogene Y-linked","termid":"PBO:0080010"}


id: MONDO:0000575
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete MONDO:0000575 (obsolete MONDO:0000575)","termid":"MONDO:0000575","xrefs":{"Monarch":{"xref_id":"0000575"}}}


id: MONDO:0008008
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"MOMO syndrome is a very rare genetic overgrowth/obesity syndrome characterized by macrocephaly, obesity, mental (intellectual) disability and ocular abnormalities. Other frequent clinical signs include macrosomia, downslanting palpebral fissures, hypertelorism, broad nasal root, high and broad forehead and delay in bone maturation, in association with normal thyroid function and karyotype.","definition_xrefs":["Orphanet:2563"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MOMO syndrome","secondary_identifiers":["GARD:178","MESH:C535812","MEDGEN:371897","OMIM:157980","UMLS:C1834759","SCTID:724137002"],"synonyms":[{"name":"MOMO syndrome","type":"exact"},{"name":"macrocephaly-obesity-mental disability-ocular abnormalities syndrome","type":"exact"},{"name":"macrocrania, obesity, ocular abnormalities (retinal coloboma and nystagmus)","type":"related"},{"name":"macrosomia, obesity, macrocephaly, and ocular abnormalities","type":"related"},{"name":"macrosomia, obesity, macrocephaly, ocular abnormalities","type":"related"},{"name":"macrosomia-obesity-macrocephaly-ocular abnormalities syndrome","type":"exact"}],"termid":"MONDO:0008008","xrefs":{"Monarch":{"xref_id":"0008008"}}}


id: GO:0035171
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized hemocyte precursor cell acquires the specialized features of a lamellocyte. Lamellocytes are a hemocyte lineage that exists only in larvae, but are seldom observed in healthy animals. Lamellocytes differentiate massively in the lymph glands after parasitization and are large flat cells devoted to encapsulation of invaders too large to be phagocytosed by plasmatocytes.","definition_xrefs":["PMID:14734104","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"larval lymph gland hemocyte differentiation","termid":"GO:0035168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lamellocyte differentiation","synonyms":[{"name":"lamellocyte cell differentiation","type":"exact"}],"termid":"GO:0035171"}


id: PBO:0054128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1494","termid":"PBO:0054128"}


id: GO:1905849
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of forward locomotion.","definition_xrefs":["GO_REF:0000058","PMID:11717360","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of locomotion","termid":"GO:0040013"},{"relation_name":"is_a","term_name":"regulation of forward locomotion","termid":"GO:0043059"},{"relation_name":"negatively_regulates","term_name":"forward locomotion","termid":"GO:0043056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of forward locomotion","synonyms":[{"name":"down regulation of forward locomotion","type":"exact"},{"name":"down-regulation of forward locomotion","type":"exact"},{"name":"downregulation of forward locomotion","type":"exact"},{"name":"inhibition of forward locomotion","type":"narrow"}],"termid":"GO:1905849"}


id: PBO:0027799
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_triplatin_tetranitrate","termid":"PBO:0027799"}


id: GO:0005350
data:
  {"annotated_genes":["SJAG_04714"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97320],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015505"}]},"cv_name":"molecular_function","definition":"Enables the transfer of pyrimidine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleobase transmembrane transporter activity","termid":"GO:0015205"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04714":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"pyrimidine nucleobase transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine base transmembrane transporter activity","type":"exact"},{"name":"pyrimidine transmembrane transporter activity","type":"related"}],"termid":"GO:0005350","terms_by_termid":{"GO:0015505":null}}


id: MONDO:0054860
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0019497"],"is_obsolete":false,"name":"hearing loss, autosomal recessive 110","secondary_identifiers":["MEDGEN:1648377","GARD:18150","DOID:0111644","OMIM:618094","UMLS:C4748162"],"synonyms":[{"name":"DFNB110","type":"narrow"},{"name":"deafness, autosomal recessive 110","type":"narrow"}],"termid":"MONDO:0054860","xrefs":{"Monarch":{"xref_id":"0054860"}}}


id: GO:0140685
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the removal of a methyl group from a di- or a monomethyl-lysine residue at position 9 of the histone H3 protein. This is a flavin adenine dinucleotide (FAD)-dependent amine oxidation reaction.","definition_xrefs":["PMID:22473470"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"},{"relation_name":"is_a","term_name":"histone H3K9 demethylase activity","termid":"GO:0032454"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0032452"}],"interesting_parent_ids":["GO:0016491","GO:0140096","GO:0003674","GO:0032452","GO:0003824"],"is_obsolete":false,"name":"FAD-dependent histone H3K9me/H3K9me2 demethylase activity","synonyms":[{"name":"histone H3-di/monomethyl-lysine-9 FAD-dependent demethylase activity","type":"exact"},{"name":"histone H3K9me demethylase activity","type":"broad"},{"name":"histone H3K9me2 demethylase activity","type":"broad"}],"termid":"GO:0140685"}


id: PBO:0086416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative GTPase; associates with free 60S ribosomal subunits in the nucleolus and is required for 60S ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; member of the ODN family of nucleolar G-proteins","termid":"PBO:0086416"}


id: SO:0001459
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Clustered Palindromic Repeats interspersed with bacteriophage derived spacer sequences.","definition_xrefs":["RFAM:jd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"direct_repeat","termid":"SO:0000314"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CRISPR","secondary_identifiers":["http:en.wikipedia.org/wiki/CRISPR"],"synonyms":[{"name":"CRISPR element","type":"exact"},{"name":"Clustered_Regularly_Interspaced_Short_Palindromic_Repeat","type":"exact"}],"termid":"SO:0001459"}


id: PBO:0044956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dehydrogenase/reductase 3","termid":"PBO:0044956"}


id: MONDO:0800399
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal dominant retinopathy caused by variants in the RP1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005328"],"is_obsolete":false,"name":"RP1-related recessive retinopathy","termid":"MONDO:0800399","xrefs":{"Monarch":{"xref_id":"0800399"}}}


id: PBO:0071444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 50","termid":"PBO:0071444"}


id: PBO:0065439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, ATPase 1 pseudogene 12","termid":"PBO:0065439"}


id: PBO:0060704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit A5 pseudogene 1","termid":"PBO:0060704"}


id: PBO:0073079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stromal cell derived factor 4","termid":"PBO:0073079"}


id: MONDO:0003493
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare primary thymic carcinoma, characterized by the presence of keratinizing or non-keratinizing malignant squamous cells. Approximately 10-20% of cases occur in combination with thymoma. The prognosis depends on the tumor stage and the degree of cellular differentiation.","definition_xrefs":["NCIT:C6455"],"direct_ancestors":[{"relation_name":"is_a","term_name":"squamous cell carcinoma","termid":"MONDO:0005096"},{"relation_name":"is_a","term_name":"thymic carcinoma","termid":"MONDO:0006451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"thymus squamous cell carcinoma","secondary_identifiers":["EFO:1000579","MEDGEN:234814","DOID:5530","UMLS:C1336082"],"synonyms":[{"name":"Thymus squamous cell carcinoma","type":"exact"},{"name":"epidermoid thymic carcinoma","type":"exact"},{"name":"squamous cell carcinoma of Thymus","type":"exact"},{"name":"squamous cell carcinoma of the Thymus","type":"exact"},{"name":"thymic squamous cell carcinoma","type":"exact"},{"name":"thymus squamous cell carcinoma","type":"exact"}],"termid":"MONDO:0003493","xrefs":{"Monarch":{"xref_id":"0003493"}}}


id: PBO:0088905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane CoA pyrophosphatase (FIT) family lipid storage protein Fit1","termid":"PBO:0088905"}


id: PATO:0000617
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bent","termid":"PATO:0000617"}


id: MONDO:0011591
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cataract that has material basis in variation in the region 9q13-q22.","definition_xrefs":["PMID:11179024","DOID:0110246"],"direct_ancestors":[{"relation_name":"is_a","term_name":"early-onset non-syndromic cataract","termid":"MONDO:0011060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cataract 26 multiple types","secondary_identifiers":["MESH:C565298","OMIM:605749","UMLS:C1854003","MEDGEN:381316"],"synonyms":[{"name":"CTRCT26","type":"exact"},{"name":"cataract 26, multiple types","type":"related"},{"name":"cataract, autosomal recessive, early-onset, pulverulent","type":"related"}],"termid":"MONDO:0011591","xrefs":{"Monarch":{"xref_id":"0011591"}}}


id: PBO:0087753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the trimeric GatFAB AmidoTransferase(AdT) complex; involved in the formation of Q-tRNAQ; mutation is functionally complemented by the bacterial GatB ortholog","termid":"PBO:0087753"}


id: PBO:0077626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiol methyltransferase 1A","termid":"PBO:0077626"}


id: PBO:0042232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin Y like 4 (pseudogene)","termid":"PBO:0042232"}


id: MONDO:0016522
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome characterized by the association of conotruncal heart defects, myelomeningocele and craniofacial dysmorphism similar to that seen in monosomy 22q11.","definition_xrefs":["Orphanet:2351"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kousseff syndrome","secondary_identifiers":["MESH:C537223","SCTID:726083008","MEDGEN:444057","GARD:4752","UMLS:C2931444"],"synonyms":[{"name":"sacral meningocele conotruncal heart defects","type":"related"},{"name":"sacral meningocele, conotruncal heart defects, and minor anomalies of head and neck","type":"related"},{"name":"sacral meningocele-conotruncal heart defects syndrome","type":"exact"}],"termid":"MONDO:0016522","xrefs":{"Monarch":{"xref_id":"0016522"}}}


id: FYPO:0006124
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the methylation of peptidyl-arginine to form peptidyl-N(omega),N(omega)-dimethyl-L-arginine in one or more specific proteins, or of specific protein sites, is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein modification during vegetative growth","termid":"FYPO:0000549"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal asymmetric protein arginine dimethylation during vegetative growth","synonyms":[{"name":"normal asymmetric protein arginine dimethylation during mitotic cell cycle","type":"related"},{"name":"normal peptidyl-arginine methylation, to asymmetrical-dimethyl arginine, during vegetative growth","type":"exact"}],"termid":"FYPO:0006124"}


id: PR:G2TRP4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC21B10.15 gene.","definition_xrefs":["UniProtKB:G2TRP4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C21B10.15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21B10.15","synonyms":[{"name":"Spom972h-SPBC21B10.15","type":"exact"}],"termid":"PR:G2TRP4"}


id: PR:Q9UTA4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ribonucleases P/MRP protein subunit POP1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR22731:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonucleases P/MRP protein subunit pop1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25B8.16","secondary_identifiers":["UniProtKB:Q9UTA4"],"synonyms":[{"name":"SPAC25B8.16","type":"related"},{"name":"Spom972h-POP1","type":"exact"}],"termid":"PR:Q9UTA4"}


id: MONDO:0010097
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"coagulation protein disease","termid":"MONDO:0002242"},{"relation_name":"is_a","term_name":"inherited blood coagulation disorder","termid":"MONDO:0021181"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"Tatsumi factor deficiency","secondary_identifiers":["MESH:C564787","UMLS:C1848931","MEDGEN:336460","OMIM:272650"],"synonyms":[{"name":"Tatsumi factor deficiency","type":"exact"}],"termid":"MONDO:0010097","xrefs":{"Monarch":{"xref_id":"0010097"}}}


id: PBO:0054133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1499","termid":"PBO:0054133"}


id: GO:0060804
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that results in an increase in the rate, frequency or extent of a Wnt signaling pathway.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of Wnt signaling pathway by BMP signaling pathway (obsolete GO:0060804)","synonyms":[{"name":"positive regulation of WNT receptor signaling pathway by BMP signaling pathway","type":"exact"},{"name":"positive regulation of WNT receptor signalling pathway by BMP signalling pathway","type":"exact"},{"name":"positive regulation of Wnt-activated signaling pathway by BMP signaling pathway","type":"exact"}],"termid":"GO:0060804"}


id: MONDO:0014399
data:
  {"annotated_genes":["SJAG_04190"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88014],"is_not":false,"summary":null,"term":"MONDO:0014399"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"progeroid syndrome","termid":"MONDO:0015333"},{"relation_name":"excluded_subClassOf","term_name":"premature aging syndrome","termid":"MONDO:0019303"},{"relation_name":"is_a","term_name":"ataxia-telangiectasia-like disorder","termid":"MONDO:0011457"},{"relation_name":"is_a","term_name":"DNA repair disease","termid":"MONDO:0021190"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04190":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0021190"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0021190","MONDO:0005066"],"is_obsolete":false,"name":"ataxia-telangiectasia-like disorder 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0081385","OMIM:615919","Orphanet:438134","GARD:17736","MEDGEN:863113","UMLS:C4014676"],"synonyms":[{"name":"ATLD2","type":"related"},{"name":"PCNA-related progressive neurodegenerative photosensitivity syndrome","type":"related"},{"name":"ataxia-telangiectasia-like disorder 2","type":"exact"},{"name":"ataxia-telangiectasia-like disorder type 2","type":"exact"}],"termid":"MONDO:0014399","terms_by_termid":{"MONDO:0014399":null},"xrefs":{"Monarch":{"xref_id":"0014399"}}}


id: GO:0031355
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the plastid outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of plastid outer membrane (obsolete GO:0031355)","synonyms":[{"name":"integral to plastid outer membrane","type":"narrow"}],"termid":"GO:0031355"}


id: GO:1903966
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of monounsaturated fatty acid.","definition_xrefs":["GOC:TermGenie","GOC:hjd","GO_REF:0000068","PMID:16443825"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid biosynthetic process","termid":"GO:0006633"},{"relation_name":"is_a","term_name":"monounsaturated fatty acid metabolic process","termid":"GO:1903964"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"monounsaturated fatty acid biosynthetic process","synonyms":[{"name":"monounsaturated fatty acid anabolism","type":"exact"},{"name":"monounsaturated fatty acid biosynthesis","type":"exact"},{"name":"monounsaturated fatty acid formation","type":"exact"},{"name":"monounsaturated fatty acid synthesis","type":"exact"}],"termid":"GO:1903966"}


id: GO:0030310
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of poly-N-acetyllactosamine, a carbohydrate composed of N-acetyllactosamine repeats (Gal-beta-1,4-GlcNAc-beta-1,3)n.","definition_xrefs":["GOC:mah","PMID:9405606"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoglycan catabolic process","termid":"GO:0006026"},{"relation_name":"is_a","term_name":"poly-N-acetyllactosamine metabolic process","termid":"GO:0030309"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"poly-N-acetyllactosamine catabolic process","synonyms":[{"name":"poly-N-acetyllactosamine breakdown","type":"exact"},{"name":"poly-N-acetyllactosamine catabolism","type":"exact"},{"name":"poly-N-acetyllactosamine degradation","type":"exact"}],"termid":"GO:0030310"}


id: MONDO:0100212
data:
  {"annotated_genes":["SJAG_02326","SJAG_01307"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87598,87597],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100221"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"inherited ichthyosis","termid":"MONDO:0015947"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01307":null,"SJAG_02326":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"IFAP syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:327007","UMLS:C1839988","GARD:2952","OMIMPS:308205","Orphanet:2273"],"synonyms":[{"name":"IFAP syndrome","type":"exact"},{"name":"ichthyosis follicularis-alopecia-photophobia syndrome","type":"exact"},{"name":"ichthyosis follicularis-atrichia-photophobia syndrome","type":"exact"}],"termid":"MONDO:0100212","terms_by_termid":{"MONDO:0100221":null},"xrefs":{"Monarch":{"xref_id":"0100212"}}}


id: PBO:0002500
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"post transcriptional regulation of Tsn1 expression","termid":"PBO:0002500"}


id: GO:0032752
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-3 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-3 production","termid":"GO:0032672"},{"relation_name":"positively_regulates","term_name":"interleukin-3 production","termid":"GO:0032632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of interleukin-3 production","secondary_identifiers":["GO:0045401"],"synonyms":[{"name":"activation of interleukin-3 production","type":"narrow"},{"name":"positive regulation of IL-3 production","type":"exact"},{"name":"positive regulation of interleukin-3 biosynthetic process","type":"narrow"},{"name":"stimulation of interleukin-3 production","type":"narrow"},{"name":"up regulation of interleukin-3 production","type":"exact"},{"name":"up-regulation of interleukin-3 production","type":"exact"},{"name":"upregulation of interleukin-3 production","type":"exact"}],"termid":"GO:0032752"}


id: PBO:0059254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L20 pseudogene 1","termid":"PBO:0059254"}


id: PBO:0052050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KANSL1 antisense RNA 1","termid":"PBO:0052050"}


id: GO:0090532
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-ascorbic acid via the intermediate UDP-alpha-D-glucuronate.","definition_xrefs":["PMID:11153268","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-ascorbic acid biosynthetic process","termid":"GO:0019853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0005975","GO:0044281","GO:0008150","GO:0006766"],"is_obsolete":false,"name":"L-ascorbic acid biosynthetic process via UDP-alpha-D-glucuronate","synonyms":[{"name":"L-ascorbic acid biosynthesis via UDP-alpha-D-glucuronate","type":"related"}],"termid":"GO:0090532"}


id: GO:0009378
data:
  {"annotated_genes":["SJAG_03898","SJAG_05105","SJAG_02690","SJAG_02294"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72610,79745,79800,81146],"is_not":false,"summary":null,"term":"GO:0009378"}]},"cv_name":"molecular_function","definition":"Unwinding a DNA helix of DNA containing four-way junctions, including Holliday junctions, driven by ATP hydrolysis.","definition_xrefs":["PMID:22723423","PMID:9442895","GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA helicase activity","termid":"GO:0003678"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02294":null,"SJAG_02690":null,"SJAG_03898":null,"SJAG_05105":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0140097","GO:0003824"],"is_obsolete":false,"name":"four-way junction helicase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["GO:1990163"],"synonyms":[{"name":"ATP-dependent Holliday junction helicase activity","type":"narrow"},{"name":"ATP-dependent four-way junction DNA helicase activity","type":"exact"},{"name":"ATP-dependent four-way junction helicase activity","type":"exact"},{"name":"Holliday junction helicase activity","type":"narrow"}],"termid":"GO:0009378","terms_by_termid":{"GO:0009378":null}}


id: SO:0002318
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that alters the sequence of a gene product.","definition_xrefs":["GenCC:AR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"functional_effect_variant","termid":"SO:0001536"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"altered_gene_product_sequence","synonyms":[{"name":"altered gene product structure","type":"exact"}],"termid":"SO:0002318"}


id: MONDO:0003500
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A squamous cell carcinoma that involves the bile duct.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bile duct carcinoma","termid":"MONDO:0005496"},{"relation_name":"is_a","term_name":"squamous cell carcinoma of liver and intrahepatic biliary tract","termid":"MONDO:0018534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"squamous cell bile duct carcinoma","secondary_identifiers":["UMLS:C0861861","NCIT:C5777","DOID:5537","MEDGEN:209017"],"synonyms":[{"name":"bile duct squamous cell carcinoma","type":"exact"}],"termid":"MONDO:0003500","xrefs":{"Monarch":{"xref_id":"0003500"}}}


id: PBO:0067969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 271","termid":"PBO:0067969"}


id: PBO:0088936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"R3H and G-patch domain protein Sqs2","termid":"PBO:0088936"}


id: PATO:0002520
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer being shaped like a scute or an osteoderm.","definition_xrefs":["PATOC:EJS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scute-like","termid":"PATO:0002520"}


id: GO:0033342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of collagen binding.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of collagen binding (obsolete GO:0033342)","synonyms":[{"name":"down regulation of collagen binding","type":"exact"},{"name":"down-regulation of collagen binding","type":"exact"},{"name":"downregulation of collagen binding","type":"exact"},{"name":"inhibition of collagen binding","type":"narrow"}],"termid":"GO:0033342"}


id: GO:0060592
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process pertaining to the initial formation of the mammary gland from unspecified parts. The process begins with formation of the mammary line and ends when the solid mammary bud invades the primary mammary mesenchyme.","definition_xrefs":["PMID:17120154","PMID:16168142","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"mammary gland morphogenesis","termid":"GO:0060443"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mammary gland formation","synonyms":[{"name":"mammary bud formation","type":"related"},{"name":"mammary line formation","type":"narrow"},{"name":"mammary placode formation","type":"narrow"},{"name":"mammary sprout formation","type":"related"}],"termid":"GO:0060592"}


id: PBO:0026955
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_new_growing_cell_tip","termid":"PBO:0026955"}


id: MONDO:0008756
data:
  {"annotated_genes":["SJAG_00624"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87250],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030009"}]},"cv_name":"mondo","definition":"An extremely rare syndrome described in less than 20 families to date and characterized by total or partial alopecia associated with intellectual deficit. The syndrome can be associated with other anomalies such as seizures, sensorineural hearing loss, delayed psychomotor development, and/or hypertonia.","definition_xrefs":["Orphanet:2850"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00624":null},"genotype_count":0,"is_obsolete":false,"name":"alopecia - intellectual disability syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:716191002","UMLS:C2931280","GARD:612","DOID:0080627","OMIMPS:203650","MEDGEN:444019"],"synonyms":[{"name":"AMR syndrome 1","type":"related"},{"name":"Amr syndrome","type":"related"},{"name":"Perniola-Krajewska-Carnevale syndrome","type":"exact"},{"name":"alopecia intellectual disbility syndrome 1","type":"related"},{"name":"alopecia with severe intellectual deficit","type":"related"},{"name":"alopecia-intellectual disability syndrome","type":"exact"},{"name":"alopecia-mental retardation syndrome","type":"exact"}],"termid":"MONDO:0008756","terms_by_termid":{"MONDO:0030009":null},"xrefs":{"Monarch":{"xref_id":"0008756"}}}


id: MONDO:0012995
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myopia","termid":"MONDO:0001384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"myopia 15, autosomal dominant","secondary_identifiers":["UMLS:C2675180","MESH:C567193","OMIM:612717","MEDGEN:393323"],"synonyms":[{"name":"MYP15","type":"exact"},{"name":"myopia 15, autosomal dominant","type":"exact"}],"termid":"MONDO:0012995","xrefs":{"Monarch":{"xref_id":"0012995"}}}


id: MOD:01182
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks a cysteine and a histidine residue by forming the adduct 6-(S-L-cysteinyl)-8alpha-(-3'-L-histidino)-FAD.","definition_xrefs":["RESID:AA0436"],"direct_ancestors":[{"relation_name":"is_a","term_name":"FAD modified residue","termid":"MOD:00895"},{"relation_name":"is_a","term_name":"flavin crosslinked residues","termid":"MOD:01621"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"},{"relation_name":"is_a","term_name":"crosslinked L-histidine residue","termid":"MOD:02048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"6-(S-L-cysteinyl)-8alpha-(-3'-L-histidino)-FAD","synonyms":[{"name":"6-((R)-2-amino-2-carboxyethyl)sulfanyl-8alpha-[4-((S)-2-amino-2-carboxyethyl)imidazol-3-yl]-riboflavin 5'-(trihydrogen diphosphate) 5'->5'-ester with adenosine","type":"exact"},{"name":"6-(S-L-cysteinyl)-8alpha-(N3'-L-histidino)-FAD","type":"exact"},{"name":"6-(S-cysteinyl)-8alpha-(N(delta1)-histidyl)-FAD","type":"exact"},{"name":"6-(S-cysteinyl)-8alpha-(N(pi)-histidyl)-FAD","type":"exact"},{"name":"6-(S-cysteinyl)-8alpha-(N3'-histidyl)-FAD","type":"exact"},{"name":"6-(S-cysteinyl)-8alpha-(pros-histidyl)-FAD","type":"exact"},{"name":"BINDING FAD (covalent; via 2 links)","type":"exact"},{"name":"BINDING FAD (covalent; via 2 links, pros nitrogen)","type":"exact"},{"name":"CROSSLNK 6-(S-cysteinyl)-8alpha-(pros-histidyl)-FAD (His-Cys)","type":"exact"},{"name":"SCys6-NprosHis8a-FAD","type":"exact"}],"termid":"MOD:01182"}


id: MONDO:0006740
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Empty sella syndrome (ESS) is a condition that involves the sella turcica, a bony structure at the base of the brain that protects the pituitary gland. There is a primary and secondary form of the condition. The primary form occurs when a structural defect above the pituitary gland increases pressure in the sella turcica and causes the gland to flatten. The secondary form occurs when the pituitary gland is damaged due to injury, a tumor, surgery or radiation therapy. Some people with ESS have no symptoms. People with secondary ESS may have symptoms of decreased pituitary function such as absence of menstruation, infertility, fatigue, and intolerance to stress and infection. In children, ESS may be associated with early onset of puberty, growth hormone deficiency, pituitary tumors, or pituitary gland dysfunction. Treatment focuses on the symptoms present in each person.","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"pituitary gland disorder","termid":"MONDO:0003381"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"empty sella syndrome","secondary_identifiers":["EFO:1000914","MedDRA:10014567","icd11.foundation:49112094","MESH:D004652","DOID:3642","MEDGEN:41766","SCTID:237722004","UMLS:C0014008","ICD9:253.8","NCIT:C84686"],"synonyms":[{"name":"empty sella","type":"exact"},{"name":"empty sella syndrome","type":"exact"},{"name":"empty sella turcica","type":"related"}],"termid":"MONDO:0006740","xrefs":{"Monarch":{"xref_id":"0006740"}}}


id: FYPO:0000001
data:
  {"alleles_by_uniquename":{"SJAG_00028:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00028","name":"rga6delta","uniquename":"SJAG_00028:allele-1"},"SJAG_00118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00118","name":"mid2delta","uniquename":"SJAG_00118:allele-1"},"SJAG_00124:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00124","name":"SJAG_00124delta","uniquename":"SJAG_00124:allele-1"},"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_00364:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00364","name":"rad3delta","uniquename":"SJAG_00364:allele-1"},"SJAG_00370:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00370","name":"erg1delta","uniquename":"SJAG_00370:allele-1"},"SJAG_00409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00409","name":"gpd1delta","uniquename":"SJAG_00409:allele-1"},"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"},"SJAG_00429:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00429","name":"rad26delta","uniquename":"SJAG_00429:allele-1"},"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_00601:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00601","name":"rip1delta","uniquename":"SJAG_00601:allele-1"},"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_00993:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00993","name":"byr1delta","uniquename":"SJAG_00993:allele-1"},"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"},"SJAG_01081:allele-1":{"allele_type":"nonsense_mutation","description":"S427>stop","gene_uniquename":"SJAG_01081","name":"ade6-domE","uniquename":"SJAG_01081:allele-1"},"SJAG_01081:allele-2":{"allele_type":"amino_acid_mutation","description":"Q262A","gene_uniquename":"SJAG_01081","name":"ade6-domK","uniquename":"SJAG_01081:allele-2"},"SJAG_01081:allele-3":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01081","name":"ade6delta","uniquename":"SJAG_01081:allele-3"},"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_01143:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"711-723","gene_uniquename":"SJAG_01143","name":"mid1-delta(711-723 a.a.)","uniquename":"SJAG_01143:allele-2"},"SJAG_01181:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01181","name":"pek1delta","uniquename":"SJAG_01181:allele-1"},"SJAG_01205:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01205","name":"crb2delta","uniquename":"SJAG_01205:allele-1"},"SJAG_01242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01242","name":"vps32delta","uniquename":"SJAG_01242:allele-1"},"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_01355:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01355","name":"cox6delta","uniquename":"SJAG_01355:allele-1"},"SJAG_01374:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01374","name":"nup132delta","uniquename":"SJAG_01374:allele-1"},"SJAG_01410:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01410","name":"rad51delta","uniquename":"SJAG_01410:allele-1"},"SJAG_01458:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01458","name":"acb1delta","uniquename":"SJAG_01458:allele-1"},"SJAG_01605:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01605","name":"rad9delta","uniquename":"SJAG_01605:allele-1"},"SJAG_01680:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01680","name":"chk1delta","uniquename":"SJAG_01680:allele-1"},"SJAG_01680:allele-2":{"allele_type":"amino_acid_mutation","description":"P470L","gene_uniquename":"SJAG_01680","name":"chk1-P470L","synonyms":[{"name":"chk1- hyperactive (chk1-hyp)","reference":"PMID:23090706","type":"exact"},{"name":"chk1-hyperactive (chk1-hyp)","reference":"PMID:20368354","type":"exact"}],"uniquename":"SJAG_01680:allele-2"},"SJAG_01718:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01718","name":"byr2delta","uniquename":"SJAG_01718:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_01753:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01753","name":"mdh1delta","uniquename":"SJAG_01753:allele-1"},"SJAG_01787:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01787","name":"pck1delta","uniquename":"SJAG_01787:allele-1"},"SJAG_01794:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01794","name":"scd2delta","uniquename":"SJAG_01794:allele-1"},"SJAG_01834:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01834","name":"pom152delta","uniquename":"SJAG_01834:allele-1"},"SJAG_01906:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01906","name":"nem1delta","uniquename":"SJAG_01906:allele-1"},"SJAG_01946:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01946","name":"cem1delta","uniquename":"SJAG_01946:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K 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