# terms

id: PBO:0088697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRAPP III complex subunit Trs85a","termid":"PBO:0088697"}


id: MOD:01407
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-cysteine residue and an L-phenylalanine residue to form L-phenylalanine thiazoline-4-carboxylic acid.","definition_xrefs":["PubMed:8557573","RESID:AA0484","PubMed:7592021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiazole/thiazoline ring crosslinked residues","termid":"MOD:01420"},{"relation_name":"is_a","term_name":"crosslinked L-phenylalanine residue","termid":"MOD:02053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"L-phenylalanine thiazoline-4-carboxylic acid","synonyms":[{"name":"(4R)-2-[(1S)-1-amino-2-phenylethyl]-4,5-dihydro-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"2-[1-azanyl-2-phenylethyl]-4,5-dihydro-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"CROSSLNK Thiazoline-4-carboxylic acid (Phe-Cys)","type":"exact"},{"name":"L-phenylalanine thiazoline-4-carboxylic acid","type":"exact"}],"termid":"MOD:01407"}


id: PBO:0075143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptides B and B1 pseudogene 1","termid":"PBO:0075143"}


id: PBO:0072510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 39","termid":"PBO:0072510"}


id: GO:0044604
data:
  {"annotated_genes":["SJAG_01344","SJAG_03497"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98834,120063],"is_not":false,"summary":null,"term":"GO:0044604"}]},"cv_name":"molecular_function","definition":"Enables the directed movement of a phytochelatin from one side of a membrane to the other. Phytochelatins are a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes.","definition_xrefs":["GOC:mah","PMID:1396551"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transmembrane transporter activity","termid":"GO:0008514"},{"relation_name":"is_a","term_name":"amide transmembrane transporter activity","termid":"GO:0042887"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01344":null,"SJAG_03497":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"ABC-type phytochelatin transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0071992","GO:0071991"],"synonyms":[{"name":"ABC-type phytochelatin transmembrane transporter activity","type":"exact"},{"name":"ATP-dependent phytochelatin transmembrane transporter activity","type":"related"},{"name":"ATPase-coupled phytochelatin transmembrane transporter activity","type":"related"},{"name":"cadystin transmembrane transporter ATPase activity","type":"related"},{"name":"cadystin transmembrane transporter activity","type":"related"},{"name":"cadystin transporter activity","type":"related"},{"name":"phytochelatin transmembrane transporter ATPase activity","type":"related"},{"name":"phytochelatin transmembrane transporter activity","type":"related"},{"name":"phytochelatin transporter activity","type":"related"}],"termid":"GO:0044604","terms_by_termid":{"GO:0044604":null}}


id: PBO:0080536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASH and IL9R antisense RNA 1","termid":"PBO:0080536"}


id: GO:0019561
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-phenylalanine under anaerobic conditions; occurs via the intermediates phenylpyruvate and phenylacetaldehyde.","definition_xrefs":["GOC:mah","MetaCyc:ANAPHENOXI-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-phenylalanine catabolic process","termid":"GO:0006559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"anaerobic L-phenylalanine oxidation","termid":"GO:0019561"}


id: GO:0009345
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multimeric enzyme complex which, in bacteria, is usually a tetramer of two alpha and two beta chains and in eukaryotes, is usually a homodimer. Functions in the ligation of glycine and tRNA(Gly) to form glycyl-tRNA(Gly).","definition_xrefs":["PMID:15733854"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"glycine-tRNA ligase complex","synonyms":[{"name":"glycine-tRNA synthetase complex","type":"exact"}],"termid":"GO:0009345"}


id: PBO:0005053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element Wtf4","termid":"PBO:0005053"}


id: GO:0033003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of mast cell activation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte activation","termid":"GO:0002694"},{"relation_name":"regulates","term_name":"mast cell activation","termid":"GO:0045576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mast cell activation","termid":"GO:0033003"}


id: PBO:0047014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A17","termid":"PBO:0047014"}


id: GO:1902024
data:
  {"annotated_genes":["SJAG_03256","SJAG_03400"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99134],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0089708"},{"annotations":[105628],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090513"}]},"cv_name":"biological_process","definition":"The directed movement of a L-histidine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:kmv","PMID:22822152","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transport","termid":"GO:0015695"},{"relation_name":"is_a","term_name":"aromatic amino acid transport","termid":"GO:0015801"},{"relation_name":"is_a","term_name":"L-amino acid transport","termid":"GO:0015807"},{"relation_name":"is_a","term_name":"histidine transport","termid":"GO:0015817"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03256":null,"SJAG_03400":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"L-histidine transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1902024","terms_by_termid":{"GO:0089708":null,"GO:0090513":null}}


id: PBO:0075118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 167","termid":"PBO:0075118"}


id: PBO:0026814
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_RNA_level_during_meiotic_cell_cycle","termid":"PBO:0026814"}


id: PBO:0051804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IQ motif and Sec7 domain ArfGEF 3","termid":"PBO:0051804"}


id: GO:1905801
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of intraciliary retrograde transport.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:27930654"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of intracellular transport","termid":"GO:0032388"},{"relation_name":"is_a","term_name":"regulation of intraciliary retrograde transport","termid":"GO:1905799"},{"relation_name":"positively_regulates","term_name":"intraciliary retrograde transport","termid":"GO:0035721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of intraciliary retrograde transport","synonyms":[{"name":"activation of intraciliary retrograde transport","type":"narrow"},{"name":"activation of intraflagellar retrograde transport","type":"narrow"},{"name":"positive regulation of intraflagellar retrograde transport","type":"exact"},{"name":"up regulation of intraciliary retrograde transport","type":"exact"},{"name":"up regulation of intraflagellar retrograde transport","type":"exact"},{"name":"up-regulation of intraciliary retrograde transport","type":"exact"},{"name":"up-regulation of intraflagellar retrograde transport","type":"exact"},{"name":"upregulation of intraciliary retrograde transport","type":"exact"},{"name":"upregulation of intraflagellar retrograde transport","type":"exact"}],"termid":"GO:1905801"}


id: PBO:0027418
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_Golgi_apparatus","termid":"PBO:0027418"}


id: PR:Q10427
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A maltodextrin glucosidase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04696"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized glycosyl hydrolase C11E10.09c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC11E10.09c","secondary_identifiers":["UniProtKB:Q10427"],"synonyms":[{"name":"Spom972h-malZ","type":"exact"}],"termid":"PR:Q10427"}


id: PBO:0051652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inosine monophosphate dehydrogenase 1 pseudogene 7","termid":"PBO:0051652"}


id: GO:1903682
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of epithelial cell-cell adhesion involved in epithelium migration.","definition_xrefs":["GOC:als","GOC:TermGenie","PMID:18394891","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell-cell adhesion","termid":"GO:0022408"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of epithelial cell-cell adhesion involved in epithelium migration","termid":"GO:1903681"},{"relation_name":"negatively_regulates","term_name":"epithelial cell-cell adhesion involved in epithelium migration","termid":"GO:0090137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of epithelial cell-cell adhesion involved in epithelium migration","synonyms":[{"name":"down regulation of epithelial cell-cell adhesion involved in epithelium migration","type":"exact"},{"name":"down-regulation of epithelial cell-cell adhesion involved in epithelium migration","type":"exact"},{"name":"downregulation of epithelial cell-cell adhesion involved in epithelium migration","type":"exact"},{"name":"inhibition of epithelial cell-cell adhesion involved in epithelium migration","type":"narrow"}],"termid":"GO:1903682"}


id: GO:0032267
data:
  {"annotated_genes":["SJAG_05249"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[66537],"is_not":false,"summary":null,"term":"GO:0032267"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + cytidine(34) in tRNA(Ile2) + L-lysine = AMP + diphosphate + H+ + lysidine(34) in tRNA(Ile2). This modification converts both the codon specificity of tRNA(Ile) from AUG to AUA and its amino acid specificity from methionine to isoleucine.","definition_xrefs":["PMID:14527414","RHEA:43744"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05249":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016874","GO:0140101","GO:0003674","GO:0003824","GO:0140098"],"is_obsolete":false,"name":"tRNA(Ile)-lysidine synthase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["EC:6.3.4.19"],"synonyms":[{"name":"tRNA(Ile)-2-lysyl-cytidine synthase activity","type":"exact"},{"name":"tRNA(Ile)-lysidine synthetase activity","type":"exact"}],"termid":"GO:0032267","terms_by_termid":{"GO:0032267":null}}


id: GO:0007493
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell fate determination process in which a cell becomes capable of differentiating autonomously into an endoderm cell regardless of its environment; upon determination, the cell fate cannot be reversed.","definition_xrefs":["ISBN:0878932437","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate determination","termid":"GO:0001709"},{"relation_name":"part_of","term_name":"endodermal cell fate commitment","termid":"GO:0001711"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endodermal cell fate determination","synonyms":[{"name":"endoderm cell fate determination","type":"exact"}],"termid":"GO:0007493"}


id: GO:0042492
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized hemopoietic cell acquires specialized features of a gamma-delta T cell. A gamma-delta T cell is a T cell that expresses a gamma-delta T cell receptor complex.","definition_xrefs":["CL:0000798","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell differentiation","termid":"GO:0030217"},{"relation_name":"is_a","term_name":"gamma-delta T cell activation","termid":"GO:0046629"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"gamma-delta T cell differentiation","synonyms":[{"name":"gamma-delta T cell development","type":"related"},{"name":"gamma-delta T lymphocyte differentiation","type":"exact"},{"name":"gamma-delta T-cell differentiation","type":"exact"},{"name":"gamma-delta T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0042492"}


id: PBO:0040260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy related 13","termid":"PBO:0040260"}


id: GO:0098604
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: Se-Adenosyl-L-selenohomocysteine + H2O => Adenosine + Selenohomocysteine.","definition_xrefs":["PMID:7305945","GOC:dos","PMID:1711890"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trialkylsulfonium hydrolase activity","termid":"GO:0016802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"adenosylselenohomocysteinase activity","secondary_identifiers":["Reactome:R-HSA-2408532"],"termid":"GO:0098604"}


id: PBO:0005196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol hexakisphosphate kinase/inositol pyrophosphate synthase (predicted)","termid":"PBO:0005196"}


id: PBO:0077978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon TGC) 1-1","termid":"PBO:0077978"}


id: GO:0016554
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The conversion of a cytosine residue to uridine in an RNA molecule by deamination.","definition_xrefs":["PMID:11092837"],"direct_ancestors":[{"relation_name":"is_a","term_name":"base conversion or substitution editing","termid":"GO:0016553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytidine to uridine editing","secondary_identifiers":["Reactome:R-HSA-72200"],"termid":"GO:0016554"}


id: GO:0045329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of carnitine (hydroxy-trimethyl aminobutyric acid), a compound that participates in the transfer of acyl groups across the inner mitochondrial membrane.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid betaine biosynthetic process","termid":"GO:0006578"},{"relation_name":"is_a","term_name":"carnitine metabolic process","termid":"GO:0009437"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"carnitine biosynthetic process","secondary_identifiers":["Reactome:R-HSA-71262"],"synonyms":[{"name":"carnitine anabolism","type":"exact"},{"name":"carnitine biosynthesis","type":"exact"},{"name":"carnitine formation","type":"exact"},{"name":"carnitine synthesis","type":"exact"},{"name":"vitamin Bt biosynthesis","type":"exact"},{"name":"vitamin Bt biosynthetic process","type":"exact"}],"termid":"GO:0045329"}


id: FYPO:0005216
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle pole body is normal (i.e. indistinguishable from wild type) during metaphase of mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to mitotic spindle pole body during mitosis","termid":"FYPO:0005709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to mitotic spindle pole body during metaphase","synonyms":[{"name":"normal protein localisation to mitotic spindle pole body during metaphase","type":"exact"},{"name":"normal protein localization to mitotic SPB during metaphase","type":"exact"},{"name":"normal protein localization to mitotic spindle pole body during mitotic metaphase","type":"exact"},{"name":"normal protein localization to spindle pole body during metaphase during vegetative growth","type":"exact"},{"name":"normal protein localization to spindle pole body during metaphase of mitosis","type":"exact"}],"termid":"FYPO:0005216"}


id: PBO:0060542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NAV2 antisense RNA 2","termid":"PBO:0060542"}


id: MONDO:0033640
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"vitamin D-dependent rickets","termid":"MONDO:0024299"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vitamin D-dependent rickets, type 3","secondary_identifiers":["MEDGEN:1725534","OMIM:619073","GARD:18171","UMLS:C5436733"],"synonyms":[{"name":"VDDR3","type":"exact"}],"termid":"MONDO:0033640","xrefs":{"Monarch":{"xref_id":"0033640"}}}


id: PBO:0077289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 30C, pseudogene","termid":"PBO:0077289"}


id: GO:0140758
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"An metal-dependent isopeptidase activity that cleaves NEDD8 from a target protein to which it is conjugated.","definition_xrefs":["PMID:25628956"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metallopeptidase activity","termid":"GO:0008237"},{"relation_name":"is_a","term_name":"deNEDDylase activity","termid":"GO:0019784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0008233","GO:0016787","GO:0003824","GO:0140096"],"is_obsolete":false,"name":"metal-dependent deNEDDylase activity","termid":"GO:0140758"}


id: GO:0000076
data:
  {"annotated_genes":["SJAG_01044","SJAG_01205","SJAG_02074","SJAG_03160","SJAG_03695","SJAG_01076","SJAG_01010","SJAG_00364","SJAG_01605","SJAG_02771","SJAG_02563","SJAG_04671","SJAG_04287","SJAG_02098","SJAG_02266","SJAG_03026","SJAG_03927"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117898,108426,93201],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033315"},{"annotations":[118952,80627,117900,76585,74013,102327,101140,93202,100973,111138,72799,81218,95738,113867,118647,108429,119124],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033314"}]},"cv_name":"biological_process","definition":"A signal transduction process that contributes to a DNA replication checkpoint, that prevents the initiation of nuclear division until DNA replication is complete, thereby ensuring that progeny inherit a full complement of the genome.","definition_xrefs":["PMID:12537518","PMID:11728327","GOC:rn","GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA integrity checkpoint signaling","termid":"GO:0031570"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_01010":null,"SJAG_01044":null,"SJAG_01076":null,"SJAG_01205":null,"SJAG_01605":null,"SJAG_02074":null,"SJAG_02098":null,"SJAG_02266":null,"SJAG_02563":null,"SJAG_02771":null,"SJAG_03026":null,"SJAG_03160":null,"SJAG_03695":null,"SJAG_03927":null,"SJAG_04287":null,"SJAG_04671":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"DNA replication checkpoint signaling","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0072437"],"synonyms":[{"name":"DNA replication checkpoint","type":"exact"},{"name":"signal transduction involved in DNA replication checkpoint","type":"exact"}],"termid":"GO:0000076","terms_by_termid":{"GO:0033314":null,"GO:0033315":null}}


id: PBO:0070590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 56","termid":"PBO:0070590"}


id: MONDO:0011962
data:
  {"annotated_genes":["SJAG_01419","SJAG_02748"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86763,89031],"is_not":false,"summary":null,"term":"MONDO:0011962"}]},"cv_name":"mondo","definition":"Primary or metastatic malignant neoplasm involving the endometrium (mucous membrane that lines the endometrial cavity).","definition_xrefs":["NCIT:C27815"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uterine cancer","termid":"MONDO:0002715"},{"relation_name":"is_a","term_name":"endometrium neoplasm","termid":"MONDO:0021251"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01419":null,"SJAG_02748":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"endometrial cancer","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:1380","ICD10CM:C54.1","MEDGEN:2840","OMIM:608089","UMLS:C0007103"],"synonyms":[{"name":"cancer of endometrium","type":"exact"},{"name":"endometrial Ca","type":"exact"},{"name":"endometrial cancer","type":"exact"},{"name":"endometrial cancer, familial, autosomal dominant, somatic mutation","type":"exact"},{"name":"endometrial cancer, susceptibility to, autosomal dominant, somatic mutation","type":"exact"},{"name":"endometrial carcinoma, somatic","type":"exact"},{"name":"endometrial neoplasm","type":"broad"},{"name":"endometrium cancer","type":"exact"},{"name":"malignant endometrial neoplasm","type":"exact"},{"name":"malignant endometrium neoplasm","type":"exact"},{"name":"malignant neoplasm of endometrium","type":"exact"},{"name":"neoplasm of endometrium","type":"broad"},{"name":"primary malignant neoplasm of endometrium","type":"exact"},{"name":"tumor of endometrium","type":"broad"},{"name":"tumour of endometrium","type":"broad"}],"termid":"MONDO:0011962","terms_by_termid":{"MONDO:0011962":null},"xrefs":{"Monarch":{"xref_id":"0011962"}}}


id: PBO:0066897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 197","termid":"PBO:0066897"}


id: GO:0019509
data:
  {"annotated_genes":["SJAG_03881","SJAG_00309","SJAG_01404","SJAG_02293","SJAG_02689","SJAG_03614"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[59105,78572,79498,80053,80912,81998],"is_not":false,"summary":null,"term":"GO:0019509"}]},"cv_name":"biological_process","definition":"The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine.","definition_xrefs":["MetaCyc:PWY-4361","GOC:jl","PMID:19946895"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-methionine salvage","termid":"GO:0071267"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00309":null,"SJAG_01404":null,"SJAG_02293":null,"SJAG_02689":null,"SJAG_03614":null,"SJAG_03881":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0006790","GO:0008150"],"is_obsolete":false,"name":"L-methionine salvage from methylthioadenosine","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null},"secondary_identifiers":["MetaCyc:PWY-6754","MetaCyc:PWY-6753","MetaCyc:PWY-6756","Reactome:R-HSA-1237112"],"synonyms":[{"name":"methionine recycling","type":"narrow"},{"name":"methionine regeneration","type":"narrow"},{"name":"methionine salvage from methylthioadenosine","type":"exact"},{"name":"methionine salvage pathway","type":"exact"}],"termid":"GO:0019509","terms_by_termid":{"GO:0019509":null}}


id: PBO:0108776
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"named from budding yeast ortholog","termid":"PBO:0108776"}


id: GO:1902500
data:
  {"annotated_genes":["SJAG_00204","SJAG_01772","SJAG_01598","SJAG_00380","SJAG_05184","SJAG_05194","SJAG_04966","SJAG_03005"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[96087,106439,72841,72915,76801,78873,81497,81759],"is_not":false,"summary":null,"term":"GO:1902500"}]},"cv_name":"cellular_component","definition":"Any HOPS complex that is part of a vacuolar membrane.","definition_xrefs":["GOC:TermGenie","PMID:23645161"],"direct_ancestors":[{"relation_name":"is_a","term_name":"HOPS complex","termid":"GO:0030897"},{"relation_name":"part_of","term_name":"vacuolar membrane","termid":"GO:0005774"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00204":null,"SJAG_00380":null,"SJAG_01598":null,"SJAG_01772":null,"SJAG_03005":null,"SJAG_04966":null,"SJAG_05184":null,"SJAG_05194":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005773"}],"interesting_parent_ids":["GO:0005737","GO:0032991","GO:0005575","GO:0005773"],"is_obsolete":false,"name":"vacuolar HOPS complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"vacuolar membrane HOPS complex","type":"exact"}],"termid":"GO:1902500","terms_by_termid":{"GO:1902500":null}}


id: PBO:0071751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L41 pseudogene 7","termid":"PBO:0071751"}


id: PR:Q10323
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- imt3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10323"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol phosphoceramide mannosyltransferase 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17G8.11c","synonyms":[{"name":"IPC mannosyltransferase 3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-imt3","type":"exact"}],"termid":"PR:Q10323"}


id: PATO:0001651
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A resistance to a stimulus which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"resistant to","termid":"PATO:0001178"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased resistance to","synonyms":[{"name":"decreased resistance","type":"exact"},{"name":"low resistance to","type":"exact"}],"termid":"PATO:0001651"}


id: GO:0043871
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: delta1-piperideine-6-carboxylate + NAD+ + 2 H2O = 2-aminoadipate + NADH + H+. Delta1-piperideine-6-carboxylate is also known as 2,3,4,5-tetrahydropyridine-2-carboxylate.","definition_xrefs":["PMID:16237033"],"gene_count":0,"genotype_count":0,"name":"obsolete delta1-piperideine-6-carboxylate dehydrogenase activity (obsolete GO:0043871)","synonyms":[{"name":"AmaB","type":"related"},{"name":"PIPOX","type":"related"}],"termid":"GO:0043871"}


id: GO:0048799
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for an animal organ to attain its fully functional state. An organ is a tissue or set of tissues that work together to perform a specific function or functions.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"animal organ maturation","termid":"GO:0048799"}


id: PBO:0054612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2017","termid":"PBO:0054612"}


id: MONDO:0016065
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cleft palate- short stature- vertebral anomalies is a multiple congenital anomalies syndrome described in a father and son characterized by the association of cleft palate, peculiar facies (asymmetrical appearance, inner epicanthal folds, short nose, anteverted nostrils, low and back-oriented ears, thin upper lip and micrognathism), short stature, short neck, vertebral anomalies and intellectual disability. The transmission is presumed to be autosomal dominant. There have been no further descriptions in the literature since 1993.","definition_xrefs":["Orphanet:2015"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cleft palate-short stature-vertebral anomalies syndrome","secondary_identifiers":["GARD:1392","MEDGEN:930373","SCTID:719466009","UMLS:C4304704"],"synonyms":[{"name":"Mathieu-De Broca-Bony syndrome","type":"exact"},{"name":"cleft palate short stature vertebral anomalies","type":"related"}],"termid":"MONDO:0016065","xrefs":{"Monarch":{"xref_id":"0016065"}}}


id: GO:0042832
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Reactions triggered in response to the presence of a protozoan that act to protect the cell or organism.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to protozoan","termid":"GO:0001562"},{"relation_name":"is_a","term_name":"defense response to other organism","termid":"GO:0098542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"defense response to protozoan","secondary_identifiers":["GO:0009818"],"synonyms":[{"name":"defence response to pathogenic protozoa","type":"exact"},{"name":"defence response to protozoa","type":"exact"},{"name":"defence response to protozoon","type":"exact"},{"name":"defense response to pathogenic protozoa","type":"exact"},{"name":"defense response to protozoa","type":"exact"},{"name":"defense response to protozoan, incompatible interaction","type":"narrow"},{"name":"defense response to protozoon","type":"exact"},{"name":"resistance response to pathogenic protozoa","type":"narrow"},{"name":"resistance response to pathogenic protozoan","type":"narrow"}],"termid":"GO:0042832"}


id: PBO:0002709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-24(28) sterol reductase Sts1","termid":"PBO:0002709"}


id: GO:1901771
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of daunorubicin.","definition_xrefs":["PMID:7601857","GOC:yaf","UniPathway:UPA00054","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyketide biosynthetic process","termid":"GO:0030639"},{"relation_name":"is_a","term_name":"aminoglycoside antibiotic biosynthetic process","termid":"GO:0030648"},{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"daunorubicin metabolic process","termid":"GO:0044597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"daunorubicin biosynthetic process","synonyms":[{"name":"daunorubicin anabolism","type":"exact"},{"name":"daunorubicin biosynthesis","type":"exact"},{"name":"daunorubicin formation","type":"exact"},{"name":"daunorubicin synthesis","type":"exact"}],"termid":"GO:1901771"}


id: GO:1902903
data:
  {"annotated_genes":["SJAG_00279","SJAG_01993","SJAG_02566","SJAG_04312","SJAG_03086","SJAG_01894","SJAG_00521","SJAG_04100","SJAG_02700","SJAG_03455","SJAG_04479","SJAG_04522"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77228,81888,80835,94097],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051016"},{"annotations":[76189],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034316"},{"annotations":[103646],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031117"},{"annotations":[109426],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032231"},{"annotations":[69470,79065,81133,68574,78421],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030833"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of supramolecular fiber organization.","definition_xrefs":["GOC:TermGenie","PMID:23921388","GO_REF:0000058","GOC:PARL","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular component organization","termid":"GO:0051128"},{"relation_name":"regulates","term_name":"supramolecular fiber organization","termid":"GO:0097435"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_00521":null,"SJAG_01894":null,"SJAG_01993":null,"SJAG_02566":null,"SJAG_02700":null,"SJAG_03086":null,"SJAG_03455":null,"SJAG_04100":null,"SJAG_04312":null,"SJAG_04479":null,"SJAG_04522":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of supramolecular fiber organization","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"regulation of fibril organisation","type":"related"}],"termid":"GO:1902903","terms_by_termid":{"GO:0030833":null,"GO:0031117":null,"GO:0032231":null,"GO:0034316":null,"GO:0051016":null}}


id: FYPO:0004953
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the presence, distribution, or morphology of the prospore membrane is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component","termid":"FYPO:0000287"},{"relation_name":"output_of","term_name":"abnormal prospore membrane formation","termid":"FYPO:0001914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000121"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0000121"],"is_obsolete":false,"name":"abnormal prospore membrane","synonyms":[{"name":"abnormal forespore membrane","type":"exact"}],"termid":"FYPO:0004953"}


id: GO:0097115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The receptor clustering process involved in assembly of the presynaptic membrane in which neurexins are localized to distinct domains in the cell membrane. Neurexins are synaptic cell surface proteins which act as cell recognition molecules at nerve terminals.","definition_xrefs":["PMID:12796785","GOC:BHF","GOC:sjp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor clustering","termid":"GO:0043113"},{"relation_name":"part_of","term_name":"presynaptic membrane assembly","termid":"GO:0097105"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0061024","GO:0008150","GO:0051179","GO:0044085"],"is_obsolete":false,"name":"neurexin clustering involved in presynaptic membrane assembly","synonyms":[{"name":"Nrxn clustering","type":"broad"},{"name":"neurexin clustering","type":"broad"},{"name":"presynaptic neurexin clustering","type":"exact"}],"termid":"GO:0097115"}


id: GO:0019505
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving resorcinol (C6H4(OH)2), a benzene derivative with many applications, including dyes, explosives, resins and as an antiseptic.","definition_xrefs":["PMID:33145","PMID:7217008","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"resorcinol metabolic process","secondary_identifiers":["MetaCyc:P343-PWY"],"synonyms":[{"name":"1,3-benzenediol metabolic process","type":"exact"},{"name":"1,3-benzenediol metabolism","type":"exact"},{"name":"1,3-dihydroxybenzene metabolic process","type":"exact"},{"name":"1,3-dihydroxybenzene metabolism","type":"exact"},{"name":"resorcinol metabolism","type":"exact"}],"termid":"GO:0019505"}


id: MONDO:0035639
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited acute myeloid leukemia","termid":"MONDO:0017893"},{"relation_name":"is_a","term_name":"mixed phenotype acute leukemia","termid":"MONDO:0020743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"mixed phenotype acute leukemia with t(9;22)(q34.1;q11.2)","secondary_identifiers":["ICD10CM:C92.7","UMLS:C2826037","GARD:22354","MEDGEN:414807","Orphanet:589534"],"synonyms":[{"name":"MPAL with t(9;22)(q34.1;q11.2); BCR-ABL1","type":"exact"}],"termid":"MONDO:0035639","xrefs":{"Monarch":{"xref_id":"0035639"}}}


id: PBO:0086937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab family GTP-binding protein; contains the PEST signal sequence specific for proteolytic enzymes; may be involved in vesicular transport; overexpression leads to accumulation of Golgi-like cisternae with budding vesicles","termid":"PBO:0086937"}


id: MONDO:1012532
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"calvarial hyperostotic syndrome, non-human animal","termid":"MONDO:1011658"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calvarial hyperostotic syndrome, dog","secondary_identifiers":["OMIA:002245-9615"],"termid":"MONDO:1012532","xrefs":{"Monarch":{"xref_id":"1012532"}}}


id: PBO:0056887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial calcium uptake 2","termid":"PBO:0056887"}


id: PBO:0051637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IMP U3 small nucleolar ribonucleoprotein 3","termid":"PBO:0051637"}


id: PBO:0042551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 14","termid":"PBO:0042551"}


id: GO:1902705
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of hexose to butyrate.","definition_xrefs":["PMID:18727018","PMID:19539744","GOC:TermGenie","GOC:mengo_curators","GO_REF:0000093"],"gene_count":0,"genotype_count":0,"name":"obsolete hexose catabolic process to butyrate (obsolete GO:1902705)","synonyms":[{"name":"acidogenesis","type":"broad"},{"name":"hexose breakdown to butyrate","type":"exact"},{"name":"hexose catabolism to butyrate","type":"exact"},{"name":"hexose degradation to butyrate","type":"exact"}],"termid":"GO:1902705"}


id: MONDO:0014767
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Seckel syndrome in which the cause of the disease is a mutation in the TRAIP gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Seckel syndrome","termid":"MONDO:0019342"},{"relation_name":"is_a","term_name":"primordial dwarfism and slender bone disorder","termid":"MONDO:0800063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Seckel syndrome 9","secondary_identifiers":["GARD:16158","OMIM:616777","MEDGEN:907155","DOID:0070005","UMLS:C4225212"],"synonyms":[{"name":"SCKL9","type":"exact"},{"name":"Seckel syndrome 9","type":"exact"},{"name":"Seckel syndrome caused by mutation in TRAIP","type":"exact"},{"name":"Seckel syndrome type 9","type":"exact"},{"name":"TRAIP Seckel syndrome","type":"exact"}],"termid":"MONDO:0014767","xrefs":{"Monarch":{"xref_id":"0014767"}}}


id: FYPO:0009047
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of dimethyl sulfoxide than normal.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0000139","FYPO:0001985","FYPO:0002682"],"is_obsolete":false,"name":"resistance to dimethyl sulfoxide","synonyms":[{"name":"resistance to dimethyl sulfoxide during mitotic cell cycle","type":"related"},{"name":"resistance to dimethyl sulfoxide during vegetative growth","type":"exact"},{"name":"resistant to dimethyl sulfoxide","type":"exact"}],"termid":"FYPO:0009047"}


id: MONDO:0044724
data:
  {"annotated_genes":["SJAG_03560"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87023],"is_not":false,"summary":null,"term":"MONDO:0044724"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"3-methylglutaconic aciduria","termid":"MONDO:0017359"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03560":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"3-methylglutaconic aciduria type 9","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:17940","Orphanet:505216","OMIM:617698","MEDGEN:1622927","UMLS:C4540171","DOID:0070002"],"synonyms":[{"name":"3-METHYLGLUTACONIC aciduria, type IX","type":"related"},{"name":"3-Methylglutaconic aciduria, type 9","type":"related"},{"name":"3-methylglutaconic aciduria-epilepsy-spasticity-severe intellectual disability syndrome","type":"exact"},{"name":"3-methylglutaconic acuduria type IX","type":"related"},{"name":"3-methylglutaconic acuduria type IX, MGCA9","type":"exact"},{"name":"MGA9","type":"exact"},{"name":"MGCA9","type":"related"}],"termid":"MONDO:0044724","terms_by_termid":{"MONDO:0044724":null},"xrefs":{"Monarch":{"xref_id":"0044724"}}}


id: PBO:0049224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor kinase 6","termid":"PBO:0049224"}


id: PBO:0060847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nei like DNA glycosylase 1","termid":"PBO:0060847"}


id: PBO:0062444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 109 pseudogene","termid":"PBO:0062444"}


id: PBO:0047671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"filaggrin","termid":"PBO:0047671"}


id: GO:0008822
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete crotonobetaine/carnitine-CoA ligase activity (obsolete GO:0008822)","synonyms":[{"name":"crotonobetaine/carnitine-CoA ligase activity","type":"exact"}],"termid":"GO:0008822"}


id: GO:0048776
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of leucophore differentiation.","definition_xrefs":["GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leucophore differentiation","termid":"GO:0048775"},{"relation_name":"is_a","term_name":"negative regulation of pigment cell differentiation","termid":"GO:0050941"},{"relation_name":"negatively_regulates","term_name":"leucophore differentiation","termid":"GO:0048772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of leucophore differentiation","synonyms":[{"name":"down regulation of leucophore differentiation","type":"exact"},{"name":"down-regulation of leucophore differentiation","type":"exact"},{"name":"downregulation of leucophore differentiation","type":"exact"},{"name":"inhibition of leucophore differentiation","type":"narrow"}],"termid":"GO:0048776"}


id: GO:0046847
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly of a filopodium, a thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone.","definition_xrefs":["GOC:dph","PMID:18464790","PMID:16337369","GOC:mah","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection assembly","termid":"GO:0120031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"filopodium assembly","synonyms":[{"name":"filopodia biosynthesis","type":"related"},{"name":"filopodia formation","type":"related"},{"name":"filopodium formation","type":"related"}],"termid":"GO:0046847"}


id: MONDO:0002838
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete spindle cell carcinoma (obsolete MONDO:0002838)","termid":"MONDO:0002838","xrefs":{"Monarch":{"xref_id":"0002838"}}}


id: MONDO:0018360
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A self-limited skin rash that appears in the neonatal period and usually resolves in four to six months after birth. It is caused by placental transfer of maternal autoantibodies, usually anti-Ro antibody. In a minority of cases, it is associated with congenital heart block, hepatitis, or thrombocytopenia. The mothers of the affected babies may be asymptomatic or suffer from systemic lupus erythematosus, Sjogren's syndrome, or rheumatoid arthritis.","definition_xrefs":["NCIT:C99236"],"direct_ancestors":[{"relation_name":"is_a","term_name":"systemic lupus erythematosus","termid":"MONDO:0007915"},{"relation_name":"is_a","term_name":"secondary neonatal autoimmune disease","termid":"MONDO:0018356"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"neonatal lupus erythematosus","secondary_identifiers":["NORD:1495","MESH:C536397","EFO:0004537","Orphanet:398124","MEDGEN:98372","UMLS:C0409979","SCTID:95609003","GARD:21647","icd11.foundation:213855225"],"synonyms":[{"name":"Neonatal Lupus","type":"exact"},{"name":"congenital lupus","type":"related"},{"name":"congenital lupus erythematosus","type":"related"},{"name":"neonatal SLE","type":"related"},{"name":"neonatal lupus","type":"related"},{"name":"neonatal lupus syndrome","type":"related"},{"name":"neonatal systemic lupus erythematosus","type":"related"}],"termid":"MONDO:0018360","xrefs":{"Monarch":{"xref_id":"0018360"}}}


id: PBO:0077363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 104","termid":"PBO:0077363"}


id: GO:0000949
data:
  {"annotated_genes":["SJAG_02734","SJAG_04842","SJAG_03743"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72855,73178,75562],"is_not":false,"summary":null,"term":"GO:0000949"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving the catabolism of aromatic amino acids to produce aromatic alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When an aromatic family amino acid, phenylalanine, tyrosine, or tryptophan, is used as the substrate, 2-phenylethanol, 4-hydroxyphenylethanol, or tryptophol, respectively, is produced. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of alcohols, often collectively referred to as fusel alcohols. Depending on the redox state of the cells, carboxylic acid derivatives may be produced instead of alcohols.","definition_xrefs":["GOC:krc","PMID:18281432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid catabolic process to alcohol via Ehrlich pathway","termid":"GO:0000947"},{"relation_name":"is_a","term_name":"aromatic amino acid family catabolic process","termid":"GO:0009074"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02734":null,"SJAG_03743":null,"SJAG_04842":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"aromatic amino acid family catabolic process to alcohol via Ehrlich pathway","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0000949","terms_by_termid":{"GO:0000949":null}}


id: GO:0017046
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a peptide with hormonal activity in animals.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amide binding","termid":"GO:0033218"},{"relation_name":"is_a","term_name":"hormone binding","termid":"GO:0042562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"peptide hormone binding","synonyms":[{"name":"polypeptide hormone binding","type":"exact"}],"termid":"GO:0017046"}


id: PBO:0117119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC35F4 antisense RNA 1","termid":"PBO:0117119"}


id: GO:0106322
data:
  {"annotated_genes":["SJAG_01457"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105273],"is_not":false,"summary":null,"term":"GO:0106322"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-(hydroxymethyl)glutathione + NAD+ = S-formylglutathione + NADH + H+.","definition_xrefs":["RHEA:19985"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity","termid":"GO:0051903"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"S-(hydroxymethyl)glutathione dehydrogenase (NAD+) activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106322","terms_by_termid":{"GO:0106322":null}}


id: SO:0002037
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tRNA primary transcript that also encodes pre-miR sequence that is processed to form functionally active miRNA.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_part","term_name":"pre_miRNA","termid":"SO:0001244"},{"relation_name":"is_a","term_name":"tRNA_primary_transcript","termid":"SO:0000210"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"miR_encoding_tRNA_primary_transcript","synonyms":[{"name":"miR encoding tRNA primary transcript","type":"exact"}],"termid":"SO:0002037"}


id: MONDO:0026729
data:
  {"annotated_genes":["SJAG_03333"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87653],"is_not":false,"summary":null,"term":"MONDO:0026729"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type I","termid":"MONDO:0005500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03333":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"congenital disorder of glycosylation, type ICC","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1684742","DOID:0111839","UMLS:C5231393","OMIM:301031"],"synonyms":[{"name":"CDG1CC","type":"related"},{"name":"CONGENITAL DISORDER OF GLYCOSYLATION, TYPE Icc","type":"related"},{"name":"congenital disorder of glycosylation, type Icc, X-linked recessive","type":"exact"}],"termid":"MONDO:0026729","terms_by_termid":{"MONDO:0026729":null},"xrefs":{"Monarch":{"xref_id":"0026729"}}}


id: MONDO:1010729
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any leukocyte adhesion deficiency that occurs in cattle due to a mutation in the ITGB2 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte adhesion deficiency, non-human animal","termid":"MONDO:1012580"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukocyte adhesion deficiency, ITGB2-related, cattle","secondary_identifiers":["OMIA:000595-9913"],"synonyms":[{"name":"BLAD","type":"exact"},{"name":"bovine leukocyte adhesion deficiency","type":"exact"},{"name":"leukocyte adhesion deficiency type I, cattle","type":"related"}],"termid":"MONDO:1010729","xrefs":{"Monarch":{"xref_id":"1010729"}}}


id: PBO:0031335
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_bleomycin","termid":"PBO:0031335"}


id: GO:0043621
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a domain within the same polypeptide.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete protein self-association (obsolete GO:0043621)","synonyms":[{"name":"intramolecular protein binding","type":"exact"},{"name":"protein self association","type":"exact"},{"name":"protein self binding","type":"exact"}],"termid":"GO:0043621"}


id: FYPO:0007907
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal when a cell is subject to amino acid starvation.","definition_xrefs":["PMID:34805795nPomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein phosphorylation during vegetative growth","termid":"FYPO:0001038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0002494","FYPO:0000002","FYPO:0002274","FYPO:0005447"],"is_obsolete":false,"name":"increased protein phosphorylation during amino acid starvation","termid":"FYPO:0007907"}


id: GO:0050529
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + polyneuridine aldehyde = 16-epivellosimine + CO2 + methanol.","definition_xrefs":["EC:3.1.1.78","RHEA:17501"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016788","GO:0016787"],"is_obsolete":false,"name":"polyneuridine-aldehyde esterase activity","secondary_identifiers":["KEGG_REACTION:R05825","MetaCyc:3.1.1.78-RXN"],"synonyms":[{"name":"PNAE activity","type":"related"},{"name":"polyneuridine aldehyde esterase activity","type":"related"},{"name":"polyneuridine aldehyde hydrolase (decarboxylating)","type":"related"}],"termid":"GO:0050529"}


id: GO:0019548
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including spermine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arginine metabolic process","termid":"GO:0006525"},{"relation_name":"is_a","term_name":"spermine metabolic process","termid":"GO:0008215"},{"relation_name":"is_a","term_name":"alpha-amino acid catabolic process","termid":"GO:1901606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"arginine catabolic process to spermine","secondary_identifiers":["MetaCyc:ARGSPECAT-PWY"],"synonyms":[{"name":"arginine breakdown to spermine","type":"exact"},{"name":"arginine degradation to spermine","type":"exact"}],"termid":"GO:0019548"}


id: GO:0060380
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of binding to single-stranded telomeric DNA.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of single-stranded telomeric DNA binding (obsolete GO:0060380)","synonyms":[{"name":"regulation of telomeric ssDNA binding","type":"exact"}],"termid":"GO:0060380"}


id: GO:0004982
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with an N-formyl peptide to initiate a change in cell activity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled peptide receptor activity","termid":"GO:0008528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"N-formyl peptide receptor activity","synonyms":[{"name":"Fmet-leu-phe receptor","type":"exact"}],"termid":"GO:0004982"}


id: MONDO:1011951
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteodystrophy, non-human animal","secondary_identifiers":["OMIA:000753"],"termid":"MONDO:1011951","xrefs":{"Monarch":{"xref_id":"1011951"}}}


id: GO:0070205
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylate = (1R,6R)-2-succinyl-6-hydroxycyclohexa-2,4-diene-1-carboxylate + pyruvate.","definition_xrefs":["EC:4.2.99.20","RHEA:25597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity","termid":"GO:0016835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity","secondary_identifiers":["KEGG_REACTION:R08166","MetaCyc:RXN-9310"],"synonyms":[{"name":"2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase activity","type":"related"},{"name":"6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate synthase activity","type":"related"},{"name":"MenH","type":"related"},{"name":"SHCHC synthase activity","type":"related"},{"name":"YfbB","type":"related"}],"termid":"GO:0070205"}


id: PBO:0082666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the core factor (CF) rDNA transcription factor complex; CF is required for transcription of 35S rRNA genes by RNA polymerase I and is composed of Rrn6p, Rrn7p, and Rrn11p","termid":"PBO:0082666"}


id: GO:0044136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The progression of the symbiont from an initial condition to a later condition, occurring on or near its host rhizosphere. The host rhizosphere is defined as total below-ground surfaces of a plant as a habitat for its symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:jl","GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete development of symbiont on or near host rhizosphere (obsolete GO:0044136)","termid":"GO:0044136"}


id: PBO:0003163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein (predicted), DUF1773 family protein 1","termid":"PBO:0003163"}


id: MONDO:1011228
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Entropion that occurs in pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"entropion, non-human animal","termid":"MONDO:1010323"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"entropion, pig","secondary_identifiers":["OMIA:000337-9823"],"termid":"MONDO:1011228","xrefs":{"Monarch":{"xref_id":"1011228"}}}


id: PBO:0005465
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.1.20","termid":"PBO:0005465"}


id: GO:0018323
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The oxidation of peptidyl-cysteine to form peptidyl-L-cysteine sulfinic acid.","definition_xrefs":["RESID:AA0262"],"gene_count":0,"genotype_count":0,"name":"obsolete enzyme active site formation via L-cysteine sulfinic acid (obsolete GO:0018323)","synonyms":[{"name":"enzyme active site formation via L-cysteine sulphinic acid","type":"exact"}],"termid":"GO:0018323"}


id: PBO:0077859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tropomyosin 3","termid":"PBO:0077859"}


id: GO:1905354
data:
  {"annotated_genes":["SJAG_02275","SJAG_04006","SJAG_02374","SJAG_00966","SJAG_04084","SJAG_04321","SJAG_01431","SJAG_02808","SJAG_03745","SJAG_03179","SJAG_04824","SJAG_03789","SJAG_01581","SJAG_01910","SJAG_04153","SJAG_01521","SJAG_04818","SJAG_00854","SJAG_01818","SJAG_01191"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[74122,76757,76006,73002,76271,73297,74888,77928,79371,117717],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000177"},{"annotations":[65636,93470,120419,96738],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090730"},{"annotations":[72296,77927,73001,75123,76005,79370,102823,76270,76756,117281,73296,74887,74121],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000176"},{"annotations":[79399,80492,71922],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031251"}]},"cv_name":"cellular_component","definition":"A protein complex which is capable of exoribonuclease activity.","definition_xrefs":["GO_REF:0000088","PMID:17174896","GOC:TermGenie","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00854":null,"SJAG_00966":null,"SJAG_01191":null,"SJAG_01431":null,"SJAG_01521":null,"SJAG_01581":null,"SJAG_01818":null,"SJAG_01910":null,"SJAG_02275":null,"SJAG_02374":null,"SJAG_02808":null,"SJAG_03179":null,"SJAG_03745":null,"SJAG_03789":null,"SJAG_04006":null,"SJAG_04084":null,"SJAG_04153":null,"SJAG_04321":null,"SJAG_04818":null,"SJAG_04824":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"exoribonuclease complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:1905354","terms_by_termid":{"GO:0000176":null,"GO:0000177":null,"GO:0031251":null,"GO:0090730":null}}


id: GO:2000342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of chemokine (C-X-C motif) ligand 2 production.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of chemokine production","termid":"GO:0032682"},{"relation_name":"is_a","term_name":"regulation of chemokine (C-X-C motif) ligand 2 production","termid":"GO:2000341"},{"relation_name":"negatively_regulates","term_name":"chemokine (C-X-C motif) ligand 2 production","termid":"GO:0072567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of chemokine (C-X-C motif) ligand 2 production","secondary_identifiers":["GO:1904208"],"synonyms":[{"name":"inhibition of CCL2 secretion","type":"narrow"},{"name":"inhibition of chemokine (C-C motif) ligand 2 secretion","type":"narrow"},{"name":"negative regulation of CXCL2 production","type":"exact"},{"name":"negative regulation of MIP-2 production","type":"exact"},{"name":"negative regulation of MIP2 production","type":"exact"},{"name":"negative regulation of SCYB2 production","type":"exact"},{"name":"negative regulation of chemokine (C-C motif) ligand 2 secretion","type":"narrow"}],"termid":"GO:2000342"}


id: PBO:0061777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OCA2 melanosomal transmembrane protein","termid":"PBO:0061777"}


id: SO:0001633
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant located within 5 KB of the end of a gene.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"downstream_gene_variant","termid":"SO:0001632"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5KB_downstream_variant","secondary_identifiers":["http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp"],"synonyms":[{"name":"5KB downstream variant","type":"exact"},{"name":"Seattleseq:downstream-gene","type":"exact"},{"name":"downstream","type":"exact"},{"name":"within 5KB downstream","type":"related"}],"termid":"SO:0001633"}


id: GO:0050238
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pyridoxine + acceptor = isopyridoxal + reduced acceptor.","definition_xrefs":["MetaCyc:PYRIDOXINE-5-DEHYDROGENASE-RXN","EC:1.1.99.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"pyridoxine 5-dehydrogenase activity","secondary_identifiers":["RHEA:14497"],"synonyms":[{"name":"pyridoxal-5-dehydrogenase activity","type":"related"},{"name":"pyridoxin 5-dehydrogenase activity","type":"related"},{"name":"pyridoxine 5'-dehydrogenase activity","type":"related"},{"name":"pyridoxine:(acceptor) 5-oxidoreductase activity","type":"related"},{"name":"pyridoxine:acceptor 5-oxidoreductase activity","type":"related"},{"name":"pyridoxol 5-dehydrogenase activity","type":"related"}],"termid":"GO:0050238"}


id: GO:1900791
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving shamixanthone.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"},{"relation_name":"is_a","term_name":"ketone metabolic process","termid":"GO:0042180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"shamixanthone metabolic process","synonyms":[{"name":"shamixanthone metabolism","type":"exact"}],"termid":"GO:1900791"}


id: GO:0102131
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: NADP + a 3R-hydroxyglutaryl-[acp] methyl ester = NADPH + H+ + a 3-oxo-glutaryl-[acp] methyl ester.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-oxo-glutaryl-[acp] methyl ester reductase activity (obsolete GO:0102131)","termid":"GO:0102131"}


id: PBO:0061202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOC2 like nucleolar associated transcriptional repressor pseudogene 2","termid":"PBO:0061202"}


id: PR:Q9P3W1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A general transcription factor IIE subunit 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR13097:SF3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription initiation factor IIE subunit alpha (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC458.07","secondary_identifiers":["UniProtKB:Q9P3W1"],"synonyms":[{"name":"SPAC458.07","type":"related"},{"name":"Spom972h-GTF2E1","type":"exact"},{"name":"TFIIE-alpha (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P3W1"}


id: PBO:0066036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAN pseudogene 5","termid":"PBO:0066036"}


id: GO:0002906
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of mature B cell apoptotic process.","definition_xrefs":["GOC:add","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of B cell apoptotic process","termid":"GO:0002903"},{"relation_name":"is_a","term_name":"regulation of mature B cell apoptotic process","termid":"GO:0002905"},{"relation_name":"negatively_regulates","term_name":"mature B cell apoptotic process","termid":"GO:0002901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mature B cell apoptotic process","synonyms":[{"name":"down regulation of mature B cell apoptosis","type":"exact"},{"name":"down-regulation of mature B cell apoptosis","type":"exact"},{"name":"downregulation of mature B cell apoptosis","type":"exact"},{"name":"inhibition of mature B cell apoptosis","type":"narrow"},{"name":"negative regulation of mature B cell apoptosis","type":"narrow"}],"termid":"GO:0002906"}


id: GO:0090500
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transition where an endocardial cushion cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac epithelial to mesenchymal transition","termid":"GO:0060317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endocardial cushion to mesenchymal transition","termid":"GO:0090500"}


id: GO:0031769
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a glucagon receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor binding","termid":"GO:0001664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"glucagon receptor binding","synonyms":[{"name":"glucagon receptor ligand","type":"narrow"}],"termid":"GO:0031769"}


id: GO:0005628
data:
  {"annotated_genes":["SJAG_03746","SJAG_00974","SJAG_03915","SJAG_04948","SJAG_00430","SJAG_01469","SJAG_04184","SJAG_03587","SJAG_02169","SJAG_00826","SJAG_00405","SJAG_04080","SJAG_03250","SJAG_00821","SJAG_01697","SJAG_04483","SJAG_04275","SJAG_03483","SJAG_02368","SJAG_01855","SJAG_03536","SJAG_04922","SJAG_02736","SJAG_00971","SJAG_03721","SJAG_02076","SJAG_03079","SJAG_04001","SJAG_03145","SJAG_04781"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89977,92490,93060,93272,94659,95333,95637,96239,97151,98407,99334,102637,103279,103502,105052,105100,105965,106781,109197,110881,111121,115919,118081,118771,119354,120882],"is_not":false,"summary":null,"term":"GO:0005628"},{"annotations":[100611,104715,120397],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070056"},{"annotations":[104716,107091,120398],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070057"}]},"cv_name":"cellular_component","definition":"The prospore membrane is a double-membraned structure that extends from the cytoplasmic face of the spindle pole bodies to encompass the spindle pole bodies and the four nuclear lobes that are formed during meiosis. It helps isolate the meiotic nuclei from the cytoplasm during spore formation and serves as a foundation for the formation of the spore walls. An example of this component is found in Schizosaccharomyces pombe.","definition_xrefs":["ISBN:0879693649"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane","termid":"GO:0016020"},{"relation_name":"part_of","term_name":"ascospore-type prospore","termid":"GO:0042764"}],"gene_count":30,"genes_by_uniquename":{"SJAG_00405":null,"SJAG_00430":null,"SJAG_00821":null,"SJAG_00826":null,"SJAG_00971":null,"SJAG_00974":null,"SJAG_01469":null,"SJAG_01697":null,"SJAG_01855":null,"SJAG_02076":null,"SJAG_02169":null,"SJAG_02368":null,"SJAG_02736":null,"SJAG_03079":null,"SJAG_03145":null,"SJAG_03250":null,"SJAG_03483":null,"SJAG_03536":null,"SJAG_03587":null,"SJAG_03721":null,"SJAG_03746":null,"SJAG_03915":null,"SJAG_04001":null,"SJAG_04080":null,"SJAG_04184":null,"SJAG_04275":null,"SJAG_04483":null,"SJAG_04781":null,"SJAG_04922":null,"SJAG_04948":null},"genotype_count":0,"in_subsets":["cc_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"prospore membrane","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"FSM","type":"exact"},{"name":"ascospore-type prospore membrane","type":"exact"},{"name":"forespore membrane","type":"related"}],"termid":"GO:0005628","terms_by_termid":{"GO:0005628":null,"GO:0070056":null,"GO:0070057":null}}


id: GO:1902845
data:
  {"annotated_genes":["SJAG_03048"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104167],"is_not":false,"summary":null,"term":"GO:1902845"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of mitotic spindle elongation.","definition_xrefs":["PMID:23087209","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell cycle process","termid":"GO:0010948"},{"relation_name":"is_a","term_name":"regulation of mitotic spindle elongation","termid":"GO:0032888"},{"relation_name":"negatively_regulates","term_name":"mitotic spindle elongation","termid":"GO:0000022"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03048":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"negative regulation of mitotic spindle elongation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of mitotic spindle elongation","type":"exact"},{"name":"down regulation of spindle elongation during mitosis","type":"exact"},{"name":"down-regulation of mitotic spindle elongation","type":"exact"},{"name":"down-regulation of spindle elongation during mitosis","type":"exact"},{"name":"downregulation of mitotic spindle elongation","type":"exact"},{"name":"downregulation of spindle elongation during mitosis","type":"exact"},{"name":"inhibition of mitotic spindle elongation","type":"narrow"},{"name":"inhibition of spindle elongation during mitosis","type":"narrow"},{"name":"negative regulation of spindle elongation during mitosis","type":"exact"}],"termid":"GO:1902845","terms_by_termid":{"GO:1902845":null}}


id: PBO:0058066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4285","termid":"PBO:0058066"}


id: PBO:0120189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA-binding protein expressed during iron starvation; binds to sequence element in 3'-untranslated regions of specific mRNAs to mediate degradation; involved in iron homeostasis; protein increases in abundance and relative distribution to nucleus increases upon DNA replication stress; represses translation in response to iron limitation, downregulating multiple transcripts required for mitochondrial translation and heme biosynthesis; inhibits iron-dependent ribosome recycling factor Rli1p","termid":"PBO:0120189"}


id: MOD:00018
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to an L-histidine.","definition_xrefs":["PubMed:6876174","PubMed:5460889","DeltaMass:0","PubMed:14342316","RESID:AA0009","PubMed:2722967","PubMed:6129252","PubMed:6692818","PubMed:512","ChEBI:29979"],"direct_ancestors":[{"relation_name":"is_a","term_name":"natural, standard, encoded residue","termid":"MOD:01441"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-histidine residue","synonyms":[{"name":"(2S)-2-amino-3-(1H-imidazol-4-yl)propanoic acid","type":"exact"},{"name":"(2S)-2-amino-3-(1H-imidazol-5-yl)propanoic acid [tautomer]","type":"exact"},{"name":"2-azanyl-3-(1H-imidazol-4-yl)propanoic acid","type":"exact"},{"name":"2-azanyl-3-(1H-imidazol-5-yl)propanoic acid [tautomer]","type":"exact"},{"name":"4-(2-amino-2-carboxyethyl)imidazole","type":"exact"},{"name":"His","type":"exact"},{"name":"L-histidine","type":"exact"},{"name":"alpha-amino-beta-(4-imidazole)propionic acid","type":"exact"},{"name":"glyoxaline-5-alanine","type":"exact"}],"termid":"MOD:00018"}


id: PBO:0076737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"t-complex 10 like 3, pseudogene","termid":"PBO:0076737"}


id: GO:0010722
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of ferrochelatase activity; catalysis of the reaction: protoporphyrin + Fe2+ = protoheme + 2 H+.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of ferrochelatase activity (obsolete GO:0010722)","termid":"GO:0010722"}


id: GO:0016203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process in which a skeletal muscle attaches to its target (such as bone or body wall).","definition_xrefs":["GOC:isa_complete","GOC:sart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"},{"relation_name":"part_of","term_name":"skeletal muscle organ development","termid":"GO:0060538"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"muscle attachment","termid":"GO:0016203"}


id: PATO:0000064
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000064 absolute percentage (obsolete PATO:0000064)","termid":"PATO:0000064"}


id: MONDO:0022458
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome characterized by congenital constriction bands, often deformity of the nails with distally located bands, and commonly a malformation of the hand.","definition_xrefs":["PMID:374416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annular constricting bands","termid":"MONDO:0022458","xrefs":{"Monarch":{"xref_id":"0022458"}}}


id: PBO:0083115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair methyltransferase (6-O-methylguanine-DNA methylase); involved in protection against DNA alkylation damage","termid":"PBO:0083115"}


id: PBO:0117001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IER2 antisense RNA 1","termid":"PBO:0117001"}


id: GO:0018929
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving methyl fluoride, fluorine-substituted methane, a gaseous halogenated hydrocarbon that has been investigated as an inhibitor of methanotrophy and nitrification in soils.","definition_xrefs":["UM-BBD_pathwayID:mf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"halogenated hydrocarbon metabolic process","termid":"GO:0042197"},{"relation_name":"is_a","term_name":"organofluorine metabolic process","termid":"GO:0090346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"methyl fluoride metabolic process","synonyms":[{"name":"methyl fluoride metabolism","type":"exact"}],"termid":"GO:0018929"}


id: GO:0021851
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The division of neuroblasts in the dorsal region of the lateral ganglionic eminence. These cells give rise to embryonic interneuron precursors that will migrate tangentially to the olfactory bulb.","definition_xrefs":["GOC:dph","GO_REF:0000021","GOC:jid","PMID:12626695","GOC:cls","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuroblast division in subpallium","termid":"GO:0021848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuroblast division in dorsal lateral ganglionic eminence","termid":"GO:0021851"}


id: GO:0047515
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: [oligomeric (1->3)-beta-D-glucosyl](n) + phosphate = [(1->3)-beta-D-glucosyl](n-1) + alpha-D-glucose 1-phosphate.","definition_xrefs":["MetaCyc:13-BETA-OLIGOGLUCAN-PHOSPHORYLASE-RXN","EC:2.4.1.30"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016757","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"1,3-beta-oligoglucan phosphorylase activity","secondary_identifiers":["RHEA:16041"],"synonyms":[{"name":"1,3-beta-D-oligoglucan:phosphate alpha-D-glucosyltransferase activity","type":"related"},{"name":"beta-1,3-oligoglucan phosphorylase activity","type":"related"},{"name":"beta-1,3-oligoglucan:orthophosphate glucosyltransferase II activity","type":"related"}],"termid":"GO:0047515"}


id: PBO:0002901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyphosphate synthetase (predicted)","termid":"PBO:0002901"}


id: GO:0098637
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any protein complex that is capable of carrying out some part of the process of cell-matrix adhesion.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein complex involved in cell adhesion","termid":"GO:0098636"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"protein complex involved in cell-matrix adhesion","termid":"GO:0098637"}


id: PBO:0082102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AAA-ATPase involved in multivesicular body (MVB) protein sorting; ATP-bound Vps4p localizes to endosomes and catalyzes ESCRT-III disassembly and membrane release; ATPase activity is activated by Vta1p; regulates cellular sterol metabolism","termid":"PBO:0082102"}


id: PBO:0085065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-essential subunit of the NuA4 acetyltransferase complex; Esa1p-associated factor; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0085065"}


id: GO:0050584
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: linoleate + O2 = (9Z,11S,12Z)-11-hydroperoxyoctadeca-9,12-dienoate.","definition_xrefs":["EC:1.13.11.45","RHEA:18993"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"linoleate 11-lipoxygenase activity","secondary_identifiers":["MetaCyc:1.13.11.45-RXN","KEGG_REACTION:R05718"],"synonyms":[{"name":"linoleate dioxygenase activity","type":"related"},{"name":"linoleate:oxygen 11S-oxidoreductase activity","type":"related"},{"name":"manganese lipoxygenase activity","type":"related"}],"termid":"GO:0050584"}


id: MONDO:0009342
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An extremely rare malformative association, described in only two siblings to date, and characterized by Hirschsprung disease (defined by the presence of an aganglionic segment of variable extent in the terminal part of the colon that leads to the symptoms of intestinal obstruction including constipation and abdominal distension), polydactyly of hands and/or feet, unilateral renal agenesis, hypertelorism and congenital deafness. There have been no further descriptions in the literature since 1988.","definition_xrefs":["Orphanet:2155"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"intestinal motility disease","termid":"MONDO:0021189"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"Hirschsprung disease-hearing loss-polydactyly syndrome","secondary_identifiers":["MEDGEN:341066","OMIM:235740","MESH:C565518","UMLS:C1856112","SCTID:721221000","GARD:157"],"synonyms":[{"name":"Hirschsprung disease associated with polydactyly, unilateral renal agenesis, hypertelorism, and congenital deafness","type":"narrow"},{"name":"Hirschsprung disease with polydactyly, renal agenesis, and deafness","type":"narrow"},{"name":"Hirschsprung disease, deafness and polydactyly","type":"narrow"},{"name":"Hirschsprung disease-deafness-polydactyly syndrome","type":"narrow"},{"name":"Santos Mateus Leal syndrome","type":"related"},{"name":"Santos-Mateus-Leal syndrome","type":"exact"}],"termid":"MONDO:0009342","xrefs":{"Monarch":{"xref_id":"0009342"}}}


id: FYPO:0004728
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cytoplasmic microtubules are formed by the extension of existing nuclear microtubules through a puncture in the nuclear envelope. Normally, cytoplasmic microtubules are nucleated from microtubule organizing centers in the cytoplasm.","definition_xrefs":["PMID:15772152","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic microtubule formation from nuclear microtubules","termid":"FYPO:0004727"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"cytoplasmic microtubule formation from nuclear microtubules following nuclear envelope breakthrough","synonyms":[{"name":"cytoplasmic microtubule formation from nuclear microtubules following nuclear envelope breakthrough during mitotic cell cycle","type":"related"},{"name":"cytoplasmic microtubule formation from nuclear microtubules following nuclear envelope breakthrough during vegetative growth","type":"exact"}],"termid":"FYPO:0004728"}


id: PBO:0077490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 210","termid":"PBO:0077490"}


id: PBO:0036088
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_nuclease_activity_during_nitrogen_starvation","termid":"PBO:0036088"}


id: GO:0072570
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to ADP-D-ribose, an ADP-aldose having ribose as the aldose fragment.","definition_xrefs":["GOC:mah","PMID:20088964","GOC:sart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"},{"relation_name":"is_a","term_name":"carbohydrate derivative binding","termid":"GO:0097367"},{"relation_name":"is_a","term_name":"nucleoside phosphate binding","termid":"GO:1901265"},{"relation_name":"is_a","term_name":"heterocyclic compound binding","termid":"GO:1901363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"ADP-D-ribose binding","synonyms":[{"name":"ADP-ribose binding","type":"broad"}],"termid":"GO:0072570"}


id: GO:0070004
data:
  {"annotated_genes":["SJAG_01481"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76336],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016807"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of C- or N-terminal peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cysteine-type peptidase activity","termid":"GO:0008234"},{"relation_name":"is_a","term_name":"exopeptidase activity","termid":"GO:0008238"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01481":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0140096","GO:0003824","GO:0003674","GO:0016787","GO:0008233"],"is_obsolete":false,"name":"cysteine-type exopeptidase activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0070004","terms_by_termid":{"GO:0016807":null}}


id: PBO:0073877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 10 member 5","termid":"PBO:0073877"}


id: MONDO:0012581
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any osteogenesis imperfecta in which the cause of the disease is a mutation in the P3H1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteogenesis imperfecta and a reduction of bone mineral density.","termid":"MONDO:0800064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"osteogenesis imperfecta type 8","secondary_identifiers":["GARD:10152","DOID:0110336","MEDGEN:410075","UMLS:C1970458","MESH:C536049","OMIM:610915"],"synonyms":[{"name":"OI type VIII","type":"related"},{"name":"OI, type 8","type":"related"},{"name":"OI8","type":"exact"},{"name":"P3H1 osteogenesis imperfecta","type":"exact"},{"name":"osteogenesis imperfecta caused by mutation in P3H1","type":"exact"},{"name":"osteogenesis imperfecta type 8","type":"exact"},{"name":"osteogenesis imperfecta type VIII","type":"exact"},{"name":"osteogenesis imperfecta, type 8","type":"related"},{"name":"osteogenesis imperfecta, type VIII","type":"related"}],"termid":"MONDO:0012581","xrefs":{"Monarch":{"xref_id":"0012581"}}}


id: PBO:0112603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIN signalling inhibitor, two-component GAP Byr4","termid":"PBO:0112603"}


id: GO:1990663
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-dihydroorotate + fumarate = orotate + succinate.","definition_xrefs":["RHEA:30059","PMID:1409592"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dihydroorotate dehydrogenase activity","termid":"GO:0004152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"dihydroorotate dehydrogenase (fumarate) activity","secondary_identifiers":["EC:1.3.98.1"],"termid":"GO:1990663"}


id: GO:0009766
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. In the photosynthetic reaction centers, primary charge separation is initiated by the excitation of a molecule followed by the transfer of an electron to an electron acceptor molecule following energy transfer from light harvesting complexes.","definition_xrefs":["ISBN:0792361431"],"gene_count":0,"genotype_count":0,"name":"obsolete primary charge separation (obsolete GO:0009766)","termid":"GO:0009766"}


id: FYECO:0000233
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Uracil was completely excluded from the experimental medium/buffer.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping absent","termid":"FYECO:0000120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uracil absent","termid":"FYECO:0000233"}


id: MONDO:0004422
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A meningioma that affects the falx cerebri.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anterior cranial fossa meningioma","termid":"MONDO:0002997"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebral falx meningioma","secondary_identifiers":["MEDGEN:272627","DOID:7986","UMLS:C1333597","NCIT:C5267"],"synonyms":[{"name":"Falcine meningioma","type":"exact"},{"name":"falx cerebri meningioma","type":"exact"},{"name":"falx cerebri meningioma (disease)","type":"exact"},{"name":"meningioma (disease) of falx cerebri","type":"exact"},{"name":"meningioma of cerebral falx","type":"exact"},{"name":"meningioma of falx cerebri","type":"exact"},{"name":"meningioma of falx of cerebrum","type":"exact"},{"name":"meningioma of the cerebral falx","type":"exact"},{"name":"meningioma of the falx cerebri","type":"exact"},{"name":"meningioma of the falx of the cerebrum","type":"exact"}],"termid":"MONDO:0004422","xrefs":{"Monarch":{"xref_id":"0004422"}}}


id: MOD:01288
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Other -","definition_xrefs":["Unimod:255#H"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetaldehyde +28","termid":"MOD:00578"},{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetaldehyde +28 - site H","synonyms":[{"name":"Acetaldehyde +28","type":"related"},{"name":"Delta:H(4)C(2)","type":"related"}],"termid":"MOD:01288"}


id: MONDO:0001346
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete distal muscular dystrophy (obsolete MONDO:0001346)","termid":"MONDO:0001346","xrefs":{"Monarch":{"xref_id":"0001346"}}}


id: MONDO:0016102
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A subacute progressive symmetric sensorial and/or motor disorder characterized by muscular weakness with impaired sensation, absent or diminished tendon reflexes and elevated cerebrospinal fluid (CSF) proteins. SIDP is an intermediate form between Guillain-Barre syndrome (GBS) and chronic inflammatory demyelinating polyneuropathy (CIDP).","definition_xrefs":["Orphanet:206594"],"direct_ancestors":[{"relation_name":"is_a","term_name":"demyelinating polyneuropathy","termid":"MONDO:0003334"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0005244"],"is_obsolete":false,"name":"subacute inflammatory demyelinating polyneuropathy","secondary_identifiers":["icd11.foundation:1692167541","GARD:20355","MEDGEN:629329","SCTID:277189006","UMLS:C0456517"],"synonyms":[{"name":"SIDP","type":"exact"},{"name":"subacute inflammatory demyelinating polyradiculoneuropathy","type":"exact"}],"termid":"MONDO:0016102","xrefs":{"Monarch":{"xref_id":"0016102"}}}


id: MONDO:0006291
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A jugulotympanic paraganglioma that metastasizes to other anatomic sites.","definition_xrefs":["NCIT:C4623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular cancer","termid":"MONDO:0002095"},{"relation_name":"is_a","term_name":"skull cancer","termid":"MONDO:0002132"},{"relation_name":"is_a","term_name":"central nervous system cancer","termid":"MONDO:0002714"},{"relation_name":"is_a","term_name":"vein disorder","termid":"MONDO:0004634"},{"relation_name":"is_a","term_name":"jugulotympanic paraganglioma","termid":"MONDO:0021064"},{"relation_name":"is_a","term_name":"malignant endocrine neoplasm","termid":"MONDO:0021069"},{"relation_name":"is_a","term_name":"peripheral nervous system cancer","termid":"MONDO:0021089"},{"relation_name":"is_a","term_name":"vascular bone neoplasm","termid":"MONDO:0024499"},{"relation_name":"is_a","term_name":"neurovascular disorder","termid":"MONDO:0043218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant jugulotympanic paraganglioma","secondary_identifiers":["MEDGEN:87584","UMLS:C0347856"],"synonyms":[{"name":"cancer of jugular body","type":"exact"},{"name":"jugular body cancer","type":"exact"},{"name":"malignant glomus jugulare neoplasm","type":"exact"},{"name":"malignant glomus jugulare tumor","type":"exact"},{"name":"malignant glomus jugulare tumour","type":"exact"},{"name":"malignant jugular body neoplasm","type":"exact"},{"name":"malignant jugulotympanic paraganglioma","type":"exact"},{"name":"malignant neoplasm of glomus jugulare","type":"exact"},{"name":"malignant neoplasm of jugular body","type":"exact"},{"name":"malignant neoplasm of the glomus jugulare","type":"exact"},{"name":"malignant tumor of glomus jugulare","type":"exact"},{"name":"malignant tumor of the glomus jugulare","type":"exact"},{"name":"malignant tumour of glomus jugulare","type":"exact"},{"name":"malignant tumour of the glomus jugulare","type":"exact"}],"termid":"MONDO:0006291","xrefs":{"Monarch":{"xref_id":"0006291"}}}


id: GO:1905073
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of tight junction disassembly.","definition_xrefs":["GOC:rl","GOC:BHF","GO_REF:0000058","GOC:TermGenie","PMID:18718461"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular component organization","termid":"GO:0051128"},{"relation_name":"regulates","term_name":"tight junction disassembly","termid":"GO:1905071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of tight junction disassembly","synonyms":[{"name":"regulation of occluding cell junction disassembly","type":"exact"},{"name":"regulation of occluding junction disassembly","type":"exact"}],"termid":"GO:1905073"}


id: FYPO:0005819
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the neddylation of one or more specific proteins, or of specific protein sites, is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein modification during vegetative growth","termid":"FYPO:0000329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0002494","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal protein neddylation during vegetative growth","synonyms":[{"name":"abnormal protein neddylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005819"}


id: FYPO:0001178
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a smaller than normal proportion of cells in the population remains viable when cells in a culture in stationary phase are deprived of nitrogen.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"loss of viability upon nutrient depletion","termid":"FYPO:0000244"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"loss of viability upon nitrogen starvation","synonyms":[{"name":"decreased viability upon nitrogen starvation","type":"exact"},{"name":"loss of cell population viability upon nitrogen starvation","type":"exact"},{"name":"loss of viability in stationary phase upon nitrogen depletion","type":"related"},{"name":"loss of viability upon nitrogen depletion","type":"exact"},{"name":"loss of viability upon nitrogen deprivation","type":"exact"},{"name":"reduced viability upon nitrogen starvation","type":"exact"}],"termid":"FYPO:0001178"}


id: PBO:0011429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA methyltransferase Tgs1 (predicted)","termid":"PBO:0011429"}


id: PBO:0025445
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purine-pyrimidine metabolism disorders","termid":"PBO:0025445"}


id: PBO:0088637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"19S proteasome regulatory subunit Rpn6","termid":"PBO:0088637"}


id: MONDO:0013610
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any retinitis pigmentosa in which the cause of the disease is a mutation in the CLRN1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736","MONDO:0005328"],"is_obsolete":false,"name":"retinitis pigmentosa 61","secondary_identifiers":["GARD:15766","UMLS:C3280041","ICD10CM:H35.5","MEDGEN:481671","DOID:0110373","OMIM:614180"],"synonyms":[{"name":"CLRN1 retinitis pigmentosa","type":"exact"},{"name":"RP61","type":"exact"},{"name":"retinitis pigmentosa 61","type":"exact"},{"name":"retinitis pigmentosa caused by mutation in CLRN1","type":"exact"},{"name":"retinitis pigmentosa type 61","type":"exact"}],"termid":"MONDO:0013610","xrefs":{"Monarch":{"xref_id":"0013610"}}}


id: GO:0033805
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reactions: S-adenosyl-L-methionine + sarcosine = S-adenosyl-L-homocysteine + N,N-dimethylglycine, and S-adenosyl-L-methionine + N,N-dimethylglycine = S-adenosyl-L-homocysteine + betaine.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete sarcosine/dimethylglycine N-methyltransferase activity (obsolete GO:0033805)","synonyms":[{"name":"ApDMT","type":"related"},{"name":"S-adenosyl-L-methionine:N,N-dimethylglycine N-methyltransferase activity","type":"narrow"},{"name":"SDMT","type":"related"},{"name":"sarcosine dimethylglycine N-methyltransferase activity","type":"narrow"},{"name":"sarcosine dimethylglycine methyltransferase activity","type":"narrow"},{"name":"sarcosine/dimethylglycine N-methyltransferase activity","type":"exact"}],"termid":"GO:0033805"}


id: PBO:0042553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 16","termid":"PBO:0042553"}


id: GO:0003773
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any of a group of specific proteins that are synthesized by both prokaryotic and eukaryotic cells after they have been exposed to a temperature that is higher than normal. Other stresses, e.g. free radical damage, have a similar effect. Many members of the hsp family are not induced but are present in all cells. They are characterized by their role as molecular chaperones.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete heat shock protein activity (obsolete GO:0003773)","synonyms":[{"name":"heat shock protein activity","type":"exact"}],"termid":"GO:0003773"}


id: PBO:0054319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1711","termid":"PBO:0054319"}


id: MONDO:0044211
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"urticaria","termid":"MONDO:0005492"},{"relation_name":"is_a","term_name":"idiopathic disease","termid":"MONDO:0700007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"idiopathic urticaria","secondary_identifiers":["MEDGEN:510411","SCTID:42265009","ICD9:708.1","UMLS:C0157741","ICD10CM:L50.1"],"synonyms":[{"name":"idiopathic angioedema-urticaria","type":"related"}],"termid":"MONDO:0044211","xrefs":{"Monarch":{"xref_id":"0044211"}}}


id: FYPO:0007622
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of reactive oxygen species (ROS) measured in a cell is higher than normal when the cell is subject to oxidative stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"},{"relation_name":"is_a","term_name":"altered cellular reactive oxygen species level","termid":"FYPO:0002142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular reactive oxygen species level during cellular response to oxidative stress","synonyms":[{"name":"increased ROS accumulation during cellular response to oxidative stress","type":"related"},{"name":"increased cellular ROS accumulation during cellular response to oxidative stress","type":"related"},{"name":"increased cellular ROS level during cellular response to oxidative stress","type":"exact"},{"name":"increased cellular reactive oxygen species accumulation during cellular response to oxidative stress","type":"related"},{"name":"increased cellular reactive oxygen species level during cellular response to oxidative stress during mitotic cell cycle","type":"related"},{"name":"increased cellular reactive oxygen species level during cellular response to oxidative stress during vegetative growth","type":"exact"},{"name":"increased cellular reactive oxygen species level during oxidative stress response","type":"exact"}],"termid":"FYPO:0007622"}


id: MOD:00208
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-tyrosine residue and 5'-phosphoadenosine through a phosphodiester bond to form O4'-(phospho-5'-adenosine)-L-tyrosine.","definition_xrefs":["Unimod:405#Y","DeltaMass:0","PubMed:5543675","RESID:AA0203"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"adenylated residue","termid":"MOD:01165"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O4'-(phospho-5'-adenosine)-L-tyrosine","synonyms":[{"name":"(2S)-2-amino-3-[4-(5'-adenosine phosphonoxy)phenyl]propanoic acid","type":"exact"},{"name":"5'-adenylic-O-tyrosine","type":"exact"},{"name":"AMP binding site","type":"related"},{"name":"MOD_RES O-AMP-tyrosine","type":"exact"},{"name":"O-5'-Adenosylation ( of Tyrosine)","type":"exact"},{"name":"O4'-(phospho-5'-adenosine)-L-tyrosine","type":"exact"},{"name":"O4'-L-tyrosine 5'-adenosine phosphodiester","type":"exact"},{"name":"OAMPTyr","type":"exact"},{"name":"Phosphoadenosine","type":"related"},{"name":"hydrogen 5'-adenylate tyrosine ester","type":"exact"}],"termid":"MOD:00208"}


id: GO:0019410
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The metabolic process in which carbon monoxide (CO) is oxidized to carbon dioxide (CO2) to generate energy. Conservation of energy in this process likely uses sodium ion gradients for ATP synthesis and is coupled to quantitative sulfide methylation.","definition_xrefs":["PMID:18024677"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aerobic respiration","termid":"GO:0009060"},{"relation_name":"is_a","term_name":"energy derivation by oxidation of reduced inorganic compounds","termid":"GO:0015975"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"aerobic respiration, using carbon monoxide as electron donor","termid":"GO:0019410"}


id: PR:O74564
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- wtf9 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74564"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein wtf9 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC970.11c","synonyms":[{"name":"Spom972h-wtf9","type":"exact"}],"termid":"PR:O74564"}


id: GO:0005451
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: monoatomic cation(out) + H+(in) = monoatomic cation(in) + H+(out).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete monoatomic cation:proton antiporter activity (obsolete GO:0005451)","synonyms":[{"name":"monovalent cation:hydrogen antiporter activity","type":"exact"},{"name":"monovalent cation:proton antiporter activity","type":"related"}],"termid":"GO:0005451"}


id: GO:0038099
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a complex containing a type II activin receptor, a type I activin receptor, and a coreceptor of the EGF-CFC family (e.g. Cripto or Cryptic, in mammals).","definition_xrefs":["PMID:15062104","GOC:bf","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"part_of","term_name":"nodal signaling pathway","termid":"GO:0038092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0044085","GO:0023052","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"nodal receptor complex assembly","synonyms":[{"name":"ActRIIB.ALK4.EGF-CFC complex formation","type":"exact"},{"name":"nodal receptor complex formation","type":"exact"}],"termid":"GO:0038099"}


id: PBO:0069154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 406, pseudogene","termid":"PBO:0069154"}


id: PR:G2TRK9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- new13 gene.","definition_xrefs":["UniProtKB:G2TRK9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein new13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4D7.14","synonyms":[{"name":"Spom972h-new13","type":"exact"}],"termid":"PR:G2TRK9"}


id: PBO:0071198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 39","termid":"PBO:0071198"}


id: GO:0018768
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2E,4E)-6-(2-aminophenyl)-2-hydroxy-6-oxohexa-2,4-dienoate + H2O = (2E)-2-hydroxypenta-2,4-dienoate + anthranilate + H+.","definition_xrefs":["RHEA:27870"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances","termid":"GO:0016823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"2-hydroxy-6-oxo-6-(2'-aminophenyl)hexa-2,4-dienoate hydrolase activity","secondary_identifiers":["EC:3.7.1.13","MetaCyc:RXN-11543","UM-BBD_reactionID:r0458"],"termid":"GO:0018768"}


id: PBO:0077845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin polyglutamylase complex subunit 1","termid":"PBO:0077845"}


id: PBO:0088057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-protein ligase; forms a complex with Elc1p that polyubiquitylates monoubiquitylated RNA polymerase II to trigger its proteolysis; cullin family member with similarity to Cdc53p and human CUL3","termid":"PBO:0088057"}


id: PBO:0073242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenophosphate synthetase 1 pseudogene 7","termid":"PBO:0073242"}


id: GO:0018910
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving benzene, C6H6, a volatile, very inflammable liquid, contained in the naphtha produced by the destructive distillation of coal, from which it is separated by fractional distillation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"},{"relation_name":"is_a","term_name":"hydrocarbon metabolic process","termid":"GO:0120252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"benzene metabolic process","synonyms":[{"name":"benzene metabolism","type":"exact"}],"termid":"GO:0018910"}


id: PBO:0073422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"seizure related 6 homolog like 2","termid":"PBO:0073422"}


id: MONDO:0016561
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"1q44 microdeletion syndrome is a newly described syndrome associated with facial dysmorphism, developmental delay, in particular of expressive speech, seizures and hypotonia.","definition_xrefs":["Orphanet:238769"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 1q deletion","termid":"MONDO:0022756"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1q44 microdeletion syndrome","secondary_identifiers":["GARD:10943","MEDGEN:930209","SCTID:719649004","UMLS:C4304540"],"synonyms":[{"name":"Del(1)(q44)","type":"exact"},{"name":"chromosome 1q44 microdeletion syndrome","type":"related"},{"name":"monosomy 1q44","type":"exact"}],"termid":"MONDO:0016561","xrefs":{"Monarch":{"xref_id":"0016561"}}}


id: PBO:0041718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calreticulin 3","termid":"PBO:0041718"}


id: MONDO:0019768
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Golabi-Ito-Hall syndrome is an X-linked intellectual disability syndrome (XLMR) characterized by intellectual deficiency, microcephaly and short stature. It belongs to the group of disorders collectively referred to as Renpenning syndrome.","definition_xrefs":["Orphanet:93947"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Renpenning syndrome","termid":"MONDO:0010653"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-linked intellectual disability, Golabi-Ito-hall type","secondary_identifiers":["MEDGEN:1842639","GARD:19241","UMLS:C5681614"],"termid":"MONDO:0019768","xrefs":{"Monarch":{"xref_id":"0019768"}}}


id: GO:0099640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of proteins along microtubules in neuron projections.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axo-dendritic transport","termid":"GO:0008088"},{"relation_name":"is_a","term_name":"protein transport along microtubule","termid":"GO:0098840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"axo-dendritic protein transport","synonyms":[{"name":"axonal protein transport","type":"narrow"}],"termid":"GO:0099640"}


id: PBO:0078061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 51 (pseudogene)","termid":"PBO:0078061"}


id: PBO:0112990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Actin, structural protein in cytoskeleton; involved in cell polarization, endocytosis, and other cytoskeletal functions; monomeric actin in the nucleus plays a role in INO80 chromatin remodeling","termid":"PBO:0112990"}


id: MONDO:0019512
data:
  {"annotated_genes":["SJAG_02730"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87078],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0016581"},{"annotations":[88346],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008542"}]},"cv_name":"mondo","definition":"A disease that has its basis in the disruption of heart development.","definition_xrefs":["MONDO:patterns/basis_in_disruption_of_process"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital anomaly of cardiovascular system","termid":"MONDO:0024239"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02730":null},"genotype_count":0,"is_obsolete":false,"name":"congenital heart malformation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:88991","UMLS:C3649636","MEDGEN:1680993","EFO:0005269"],"synonyms":[{"name":"congenital heart malformation","type":"exact"},{"name":"congenital non-syndromic heart malformation","type":"related"},{"name":"disorder of heart development","type":"exact"},{"name":"heart development disease","type":"exact"},{"name":"rare congenital non-syndromic heart malformation","type":"related"}],"termid":"MONDO:0019512","terms_by_termid":{"MONDO:0008542":null,"MONDO:0016581":null},"xrefs":{"Monarch":{"xref_id":"0019512"}}}


id: MONDO:0016363
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Rare hereditary hemochromatosis comprises the rare forms of hereditary hemochromatosis (HH), a group of diseases characterized by excessive tissue iron deposition. These rare forms are hemochromatosis type 2 (juvenile), type 3 (TFR2-related), and type 4 (ferroportin disease). Hemochromatosis type 1 (also called classic hemochromatosis) is not a rare disease.","definition_xrefs":["Orphanet:220489"],"gene_count":0,"genotype_count":0,"name":"obsolete rare hereditary hemochromatosis (obsolete MONDO:0016363)","secondary_identifiers":["ICD9:275.01","NCIT:C84764"],"synonyms":[{"name":"iron overload disease","type":"broad"},{"name":"rare hereditary hemochromatosis","type":"exact"}],"termid":"MONDO:0016363","xrefs":{"Monarch":{"xref_id":"0016363"}}}


id: FYPO:0004000
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of glutamate-cysteine ligase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal glutamate-cysteine ligase activity","termid":"FYPO:0002853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000661","FYPO:0000652","FYPO:0000654"],"is_obsolete":false,"name":"increased glutamate-cysteine ligase activity","termid":"FYPO:0004000"}


id: GO:0005006
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with an epidermal growth factor receptor ligand and transmitting the signal across the plasma membrane to initiate a change in cell activity.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane receptor protein tyrosine kinase activity","termid":"GO:0004714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0038023","GO:0004672","GO:0016740","GO:0003674","GO:0140096","GO:0003824","GO:0016301"],"is_obsolete":false,"name":"epidermal growth factor receptor activity","secondary_identifiers":["GO:0005023"],"synonyms":[{"name":"EGF receptor activity","type":"exact"},{"name":"EGFR","type":"exact"},{"name":"TGF-alpha receptor activity","type":"exact"},{"name":"epidermal growth factor-activated receptor activity","type":"exact"},{"name":"transforming growth factor-alpha receptor activity","type":"exact"}],"termid":"GO:0005006"}


id: MONDO:1011452
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Intervertebral disc disease that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intervertebral disc disease, non-human animal","secondary_identifiers":["OMIA:000157"],"termid":"MONDO:1011452","xrefs":{"Monarch":{"xref_id":"1011452"}}}


id: PBO:0061339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetylneuraminate pyruvate lyase","termid":"PBO:0061339"}


id: FYPO:0001299
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which palmitoyl-CoA ligase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal palmitoyl-CoA ligase activity","termid":"FYPO:0001297"},{"relation_name":"is_a","term_name":"abolished long-chain fatty acid-CoA ligase activity","termid":"FYPO:0001306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000661","FYPO:0000654","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"abolished palmitoyl-CoA ligase activity","synonyms":[{"name":"abolished palmitoyl-CoA synthetase activity","type":"exact"},{"name":"palmitoyl-CoA ligase activity abolished","type":"exact"}],"termid":"FYPO:0001299"}


id: FYPO:0002226
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which a cell undergoes one or a few rounds of cell division before cells die, resulting in the formation a colony that contains only a few inviable cells in which cell shape is altered and cell size remains normal. Up to 6 rounds of cell division (generating 64 cells) may be observed, but 3 divisions or fewer is more typical.","definition_xrefs":["PomBase:vw","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable microcolony, abnormal cell shape, normal cell size (obsolete FYPO:0002226)","termid":"FYPO:0002226"}


id: GO:0086045
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which AV node cardiac muscle cell membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane depolarization during cardiac muscle cell action potential","termid":"GO:0086012"},{"relation_name":"part_of","term_name":"AV node cell action potential","termid":"GO:0086016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"membrane depolarization during AV node cell action potential","synonyms":[{"name":"membrane depolarization during AV node cardiac muscle cell action potential","type":"exact"},{"name":"membrane depolarization during atrioventricular node cardiac muscle cell action potential","type":"exact"}],"termid":"GO:0086045"}


id: GO:0046892
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The dehydration of peptidyl-S-carbamoyl-L-cysteine to form peptidyl-S-cyano-L-cysteine.","definition_xrefs":["RESID:AA0333","PMID:12586941"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-S-carbamoyl-L-cysteine dehydration (obsolete GO:0046892)","synonyms":[{"name":"formation of peptidyl-S-cyanocysteine","type":"exact"},{"name":"formation of peptidyl-serine thiocyanate ester","type":"exact"}],"termid":"GO:0046892"}


id: PBO:0039625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annexin A8","termid":"PBO:0039625"}


id: GO:0002578
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation","termid":"GO:0002577"},{"relation_name":"is_a","term_name":"negative regulation of immune system process","termid":"GO:0002683"},{"relation_name":"negatively_regulates","term_name":"antigen processing and presentation","termid":"GO:0019882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of antigen processing and presentation","synonyms":[{"name":"down regulation of antigen processing and presentation","type":"exact"},{"name":"down-regulation of antigen processing and presentation","type":"exact"},{"name":"downregulation of antigen processing and presentation","type":"exact"},{"name":"inhibition of antigen processing and presentation","type":"narrow"}],"termid":"GO:0002578"}


id: PBO:0030280
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_microtubule_cytoskeleton_morphology_during_vegetative_growth","termid":"PBO:0030280"}


id: GO:0050907
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a chemical stimulus is received and converted into a molecular signal as part of sensory perception.","definition_xrefs":["GOC:dos","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of chemical stimulus","termid":"GO:0009593"},{"relation_name":"is_a","term_name":"detection of stimulus involved in sensory perception","termid":"GO:0050906"},{"relation_name":"part_of","term_name":"sensory perception of chemical stimulus","termid":"GO:0007606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of chemical stimulus involved in sensory perception","synonyms":[{"name":"sensory detection of chemical stimulus","type":"exact"},{"name":"sensory detection of chemical stimulus during sensory perception","type":"exact"},{"name":"sensory perception, sensory detection of chemical stimulus","type":"exact"},{"name":"sensory perception, sensory transduction of chemical stimulus","type":"exact"},{"name":"sensory transduction of chemical stimulus","type":"exact"},{"name":"sensory transduction of chemical stimulus during sensory perception","type":"exact"}],"termid":"GO:0050907"}


id: PBO:0041943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromobox 4","termid":"PBO:0041943"}


id: GO:0052673
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: prenol + nucleoside triphosphate = prenyl phosphate + nucleoside diphosphate activity.","definition_xrefs":["GOC:ai","GOC:kd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"prenol kinase activity","synonyms":[{"name":"prenol phosphotransferase activity","type":"exact"},{"name":"prenyl alcohol kinase activity","type":"exact"},{"name":"prenyl alcohol phosphotransferase activity","type":"exact"}],"termid":"GO:0052673"}


id: GO:0071399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a linoleic acid stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to linoleic acid","termid":"GO:0070543"},{"relation_name":"is_a","term_name":"cellular response to fatty acid","termid":"GO:0071398"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to linoleic acid","synonyms":[{"name":"cellular response to linoleate","type":"exact"}],"termid":"GO:0071399"}


id: GO:0061536
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled release of glycine by a cell.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycine transport","termid":"GO:0015816"},{"relation_name":"is_a","term_name":"secretion by cell","termid":"GO:0032940"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"glycine secretion","termid":"GO:0061536"}


id: MONDO:0045031
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete infectious diarrheal disease (obsolete MONDO:0045031)","termid":"MONDO:0045031","xrefs":{"Monarch":{"xref_id":"0045031"}}}


id: GO:0032981
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form mitochondrial respiratory chain complex I.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NADH dehydrogenase complex assembly","termid":"GO:0010257"},{"relation_name":"is_a","term_name":"mitochondrial respiratory chain complex assembly","termid":"GO:0033108"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0065003","GO:0007005"],"is_obsolete":false,"name":"mitochondrial respiratory chain complex I assembly","secondary_identifiers":["Reactome:R-HSA-6799198"],"synonyms":[{"name":"mitochondrial NADH dehydrogenase complex (ubiquinone) assembly","type":"exact"},{"name":"mitochondrial complex I assembly","type":"exact"}],"termid":"GO:0032981"}


id: GO:0034143
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of toll-like receptor 4 signaling pathway.","definition_xrefs":["PMID:17328678","PMID:16551253","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pattern recognition receptor signaling pathway","termid":"GO:0062207"},{"relation_name":"regulates","term_name":"toll-like receptor 4 signaling pathway","termid":"GO:0034142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of toll-like receptor 4 signaling pathway","synonyms":[{"name":"regulation of TLR4 signaling pathway","type":"exact"},{"name":"regulation of toll-like receptor 4 signalling pathway","type":"exact"}],"termid":"GO:0034143"}


id: MONDO:0100100
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Myopathy caused by pathogenic variants in SELENON that is congenital or present early in childhood with neonatal hypotonia, delayed motor development, axial muscle weakness, scoliosis, and significant respiratory involvement. Spinal rigidity of varying severity is often present.","definition_xrefs":["PMID:12192640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital myopathy","termid":"MONDO:0019952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"SELENON-related myopathy","synonyms":[{"name":"SELENON-related myopathy","type":"exact"},{"name":"SEPN1-related myopathy","type":"exact"}],"termid":"MONDO:0100100","xrefs":{"Monarch":{"xref_id":"0100100"}}}


id: GO:0015518
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: arabinose(out) + H+(out) = arabinose(in) + H+(in).","definition_xrefs":["TC:2.A.1.1.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate:proton symporter activity","termid":"GO:0005351"},{"relation_name":"is_a","term_name":"arabinose transmembrane transporter activity","termid":"GO:0042900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"arabinose:proton symporter activity","secondary_identifiers":["GO:0015523"],"synonyms":[{"name":"arabinose efflux permease activity","type":"broad"},{"name":"arabinose efflux transmembrane transporter activity","type":"broad"},{"name":"arabinose:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015518"}


id: PBO:0087506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of HDA1 histone deacetylase complex; tetrameric trichostatin A-sensitive class II histone deacetylase complex contains Hda1p homodimer and an Hda2p-Hda3p heterodimer; involved in telomere maintenance; Hda2p relocalizes to cytosol in response to hypoxia; other members of the HDA1 histone deacetylase complex, which regulates aging through trehalose metabolism, are Hda1p and Hda3p","termid":"PBO:0087506"}


id: GO:1903931
data:
  {"annotated_genes":["SJAG_04712"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90223],"is_not":false,"summary":null,"term":"GO:1903931"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of pyrimidine-containing compound salvage.","definition_xrefs":["PMID:23695302","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"regulation of pyrimidine-containing compound salvage","termid":"GO:1903930"},{"relation_name":"positively_regulates","term_name":"pyrimidine-containing compound salvage","termid":"GO:0008655"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04712":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of pyrimidine-containing compound salvage","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of pyrimidine salvage","type":"related"},{"name":"activation of pyrimidine-containing compound salvage","type":"narrow"},{"name":"positive regulation of pyrimidine salvage","type":"related"},{"name":"up regulation of pyrimidine salvage","type":"related"},{"name":"up regulation of pyrimidine-containing compound salvage","type":"exact"},{"name":"up-regulation of pyrimidine salvage","type":"related"},{"name":"up-regulation of pyrimidine-containing compound salvage","type":"exact"},{"name":"upregulation of pyrimidine salvage","type":"related"},{"name":"upregulation of pyrimidine-containing compound salvage","type":"exact"}],"termid":"GO:1903931","terms_by_termid":{"GO:1903931":null}}


id: PBO:0074096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 26 member 10, pseudogene","termid":"PBO:0074096"}


id: PR:O74498
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A FAS-associated factor 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04839"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBX domain-containing protein 10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC285.11","secondary_identifiers":["UniProtKB:O74498"],"synonyms":[{"name":"Spom972h-FAF2","type":"exact"}],"termid":"PR:O74498"}


id: PBO:0075794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine and arginine rich splicing factor 12","termid":"PBO:0075794"}


id: GO:0030034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Assembly of the parallel bundle of actin filaments at the core of a microvillus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"parallel actin filament bundle assembly","termid":"GO:0030046"},{"relation_name":"part_of","term_name":"microvillus assembly","termid":"GO:0030033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0030036"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0007010","GO:0044085","GO:0030036","GO:0008150"],"is_obsolete":false,"name":"microvillar actin bundle assembly","termid":"GO:0030034"}


id: GO:0070776
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A histone acetyltransferase complex that has histone H3 acetyltransferase and coactivator activities. Subunits of the human complex include MYST3/MOZ, MYST4/MORF, ING5, EAF6 and one of BRPF1, BRD1/BRPF2 and BRPF3.","definition_xrefs":["PMID:18794358"],"direct_ancestors":[{"relation_name":"is_a","term_name":"H3 histone acetyltransferase complex","termid":"GO:0070775"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005575","GO:0005694","GO:0032991"],"is_obsolete":false,"name":"MOZ/MORF histone acetyltransferase complex","termid":"GO:0070776"}


id: MONDO:0020732
data:
  {"annotated_genes":["SJAG_04934"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87905],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009910"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"progeroid syndrome","termid":"MONDO:0015333"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04934":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019303"}],"interesting_parent_ids":["MONDO:0019303"],"is_obsolete":false,"name":"progeria","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:D011371","icd11.foundation:926151882","OMIMPS:176670"],"termid":"MONDO:0020732","terms_by_termid":{"MONDO:0009910":null},"xrefs":{"Monarch":{"xref_id":"0020732"}}}


id: MONDO:0019019
data:
  {"annotated_genes":["SJAG_00288","SJAG_04956","SJAG_02413","SJAG_01005","SJAG_00516","SJAG_04934","SJAG_00120","SJAG_02418","SJAG_02349"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88844],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0018163"},{"annotations":[86898],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013051"},{"annotations":[88450],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007204"},{"annotations":[87177],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014573"},{"annotations":[88246],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012592"},{"annotations":[88008],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009805"},{"annotations":[87441],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030861"},{"annotations":[87878],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013889"},{"annotations":[87905],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009910"},{"annotations":[87338],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010208"}]},"cv_name":"mondo","definition":"Osteogenesis imperfecta (OI) comprises a heterogeneous group of genetic disorders characterized by increased bone fragility, low bone mass, and susceptibility to bone fractures with variable severity.","definition_xrefs":["Orphanet:666"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with decreased bone density (obsolete MONDO:0019704)","termid":"MONDO:0019704"},{"relation_name":"is_a","term_name":"osteochondrodysplasia","termid":"MONDO:0005516"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00120":null,"SJAG_00288":null,"SJAG_00516":null,"SJAG_01005":null,"SJAG_02349":null,"SJAG_02413":null,"SJAG_02418":null,"SJAG_04934":null,"SJAG_04956":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"osteogenesis imperfecta","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:45246","ICD9:756.51","MESH:D010013","MedDRA:10031243","icd11.foundation:1219932551","OMIMPS:166200","GARD:1017","NANDO:2201011","SCTID:78314001","UMLS:C0029434","DOID:12347","NANDO:1200873","NCIT:C26837","ICD10CM:Q78.0","NORD:1535"],"synonyms":[{"name":"Fragilitas ossium","type":"related"},{"name":"Lobstein disease","type":"exact"},{"name":"Lobstein's syndrome","type":"exact"},{"name":"OI","type":"exact"},{"name":"Osteopsathyrosis","type":"exact"},{"name":"Porak and Durante disease","type":"exact"},{"name":"Vrolik disease","type":"related"},{"name":"Vrolik's disease","type":"exact"},{"name":"brittle bone disease","type":"exact"},{"name":"glass bone disease","type":"exact"}],"termid":"MONDO:0019019","terms_by_termid":{"MONDO:0007204":null,"MONDO:0009805":null,"MONDO:0009910":null,"MONDO:0010208":null,"MONDO:0012592":null,"MONDO:0013051":null,"MONDO:0013889":null,"MONDO:0014573":null,"MONDO:0018163":null,"MONDO:0030861":null},"xrefs":{"Monarch":{"xref_id":"0019019"}}}


id: PBO:0084244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Inner nuclear membrane protein; highly enriched at telomeres and subtelomeric regions; functions in regulation of subtelomeric genes and is linked to TREX (transcription export) factors; SRC1 produces 2 splice variant proteins with different functions; alternative splicing of SRC1 pre-mRNA is promoted by Hub1p; mutant has aneuploidy tolerance; SRC1 has a paralog, HEH2, that arose from the whole genome duplication","termid":"PBO:0084244"}


id: GO:0033661
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process mediated by a molecule secreted by a symbiont that results in the suppression of reactive oxygen species produced by the host as part of its innate immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont defense to host-produced reactive oxygen species","termid":"GO:0052164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"effector-mediated defense to host-produced reactive oxygen species","synonyms":[{"name":"down regulation by organism of defense-related host metabolic burst","type":"exact"},{"name":"down-regulation by organism of defense-related host oxidative burst","type":"exact"},{"name":"downregulation by organism of defense-related host AOS production","type":"exact"},{"name":"negative regulation by organism of defense-related host ROI production","type":"exact"},{"name":"negative regulation by organism of defense-related host ROS production","type":"exact"},{"name":"negative regulation by organism of defense-related host reactive oxidative species production","type":"exact"},{"name":"negative regulation by organism of defense-related host reactive oxygen intermediate production","type":"exact"},{"name":"negative regulation by organism of defense-related host respiratory burst","type":"exact"},{"name":"negative regulation by symbiont of defense-related host reactive oxygen species production","type":"exact"},{"name":"suppression by symbiont of defense-related host reactive oxygen species production","type":"related"}],"termid":"GO:0033661"}


id: GO:0036298
data:
  {"annotated_genes":["SJAG_03994","SJAG_02294","SJAG_01410","SJAG_05280"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100844,102437,104995,113417],"is_not":false,"summary":null,"term":"GO:0036298"}]},"cv_name":"biological_process","definition":"Removal of a DNA interstrand crosslink (a covalent attachment of DNA bases on opposite strands of the DNA) and restoration of the DNA by a mechanism that involves the exchange, reciprocal or nonreciprocal, of genetic material between the broken DNA molecule and a homologous DNA region.","definition_xrefs":["GOC:vw","PMID:20658649"],"direct_ancestors":[{"relation_name":"is_a","term_name":"recombinational repair","termid":"GO:0000725"},{"relation_name":"is_a","term_name":"interstrand cross-link repair","termid":"GO:0036297"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01410":null,"SJAG_02294":null,"SJAG_03994":null,"SJAG_05280":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006281","GO:0006310","GO:0006259"],"is_obsolete":false,"name":"recombinational interstrand cross-link repair","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Fanconi pathway","type":"related"},{"name":"recombination-dependent interstrand cross-link repair","type":"exact"}],"termid":"GO:0036298","terms_by_termid":{"GO:0036298":null}}


id: GO:1990831
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carcinoembryonic antigen stimulus. The carcinoembryonic antigens represent a family of glycoproteins.","definition_xrefs":["PMID:10202129","PMID:14597422"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to glycoprotein","termid":"GO:1904588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to carcinoembryonic antigen","synonyms":[{"name":"cellular response to pregnancy specific glycoprotein","type":"exact"}],"termid":"GO:1990831"}


id: PBO:0004557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptide release factor (predicted)","termid":"PBO:0004557"}


id: GO:0048824
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a pigment cell precursor.","definition_xrefs":["GOC:dgh","PMID:16499899"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pigment cell precursor differentiation","synonyms":[{"name":"chromatophore precursor differentiation","type":"exact"}],"termid":"GO:0048824"}


id: PBO:0039719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein B mRNA editing enzyme catalytic subunit 3A pseudogene 1","termid":"PBO:0039719"}


id: GO:0019556
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-histidine into other compounds, including glutamate and formamide.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate metabolic process","termid":"GO:0006536"},{"relation_name":"is_a","term_name":"L-histidine catabolic process","termid":"GO:0006548"},{"relation_name":"is_a","term_name":"amide catabolic process","termid":"GO:0043605"},{"relation_name":"is_a","term_name":"formamide metabolic process","termid":"GO:0043606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"L-histidine catabolic process to glutamate and formamide","secondary_identifiers":["MetaCyc:HISDEG-PWY"],"synonyms":[{"name":"histidine breakdown to glutamate and formamide","type":"exact"},{"name":"histidine catabolic process to glutamate and formamide","type":"broad"},{"name":"histidine degradation to glutamate and formamide","type":"exact"}],"termid":"GO:0019556"}


id: PBO:0004246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"condensin complex subunit Cut14","termid":"PBO:0004246"}


id: GO:0060168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the adenosine receptor signaling pathway. The adenosine receptor pathway is the series of molecular signals generated as a consequence of an adenosine receptor binding to one of its physiological ligands.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of G protein-coupled receptor signaling pathway","termid":"GO:0045745"},{"relation_name":"is_a","term_name":"regulation of adenosine receptor signaling pathway","termid":"GO:0060167"},{"relation_name":"positively_regulates","term_name":"G protein-coupled adenosine receptor signaling pathway","termid":"GO:0001973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of adenosine receptor signaling pathway","synonyms":[{"name":"positive regulation of adenosine receptor signalling pathway","type":"exact"}],"termid":"GO:0060168"}


id: PBO:0073033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretin","termid":"PBO:0073033"}


id: PBO:0090392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-Not complex ubiquitin-protein ligase E3 subunit 4","termid":"PBO:0090392"}


id: PBO:0039232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AKTIP pseudogene 1","termid":"PBO:0039232"}


id: GO:0033007
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of mast cell activation as part of an immune response.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune effector process","termid":"GO:0002698"},{"relation_name":"is_a","term_name":"negative regulation of mast cell activation","termid":"GO:0033004"},{"relation_name":"is_a","term_name":"regulation of mast cell activation involved in immune response","termid":"GO:0033006"},{"relation_name":"is_a","term_name":"negative regulation of immune response","termid":"GO:0050777"},{"relation_name":"negatively_regulates","term_name":"mast cell activation involved in immune response","termid":"GO:0002279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mast cell activation involved in immune response","synonyms":[{"name":"negative regulation of mast cell activation during immune response","type":"related"}],"termid":"GO:0033007"}


id: PBO:0089702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycoside Hydrolase family protein Gls1","termid":"PBO:0089702"}


id: FYPO:0002739
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which a cell does not execute a meiotic cell cycle process normally. A meiotic cell cycle process is any of the processes that form part of the meiotic cell cycle, and thereby ensures successive accurate and complete genome replication and meiotic chromosome segregation.","definition_xrefs":["GO:0022402","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic cell cycle","termid":"FYPO:0000052"},{"relation_name":"is_a","term_name":"abnormal cell cycle process","termid":"FYPO:0002734"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal meiotic cell cycle process","termid":"FYPO:0002739"}


id: PBO:0074061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC25A38 pseudogene 1","termid":"PBO:0074061"}


id: PR:Q9Y7Y8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- qrs1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7Y8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamine--tRNA ligase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC342.02","synonyms":[{"name":"GlnRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-qrs1","type":"exact"},{"name":"glutaminyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9Y7Y8"}


id: GO:1905383
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a presynapse.","definition_xrefs":["GO_REF:0000087","PMID:24449494","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to synapse","termid":"GO:0035418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to presynapse","synonyms":[{"name":"protein localisation in presynapse","type":"exact"},{"name":"protein localisation to presynapse","type":"exact"},{"name":"protein localization in presynapse","type":"exact"},{"name":"recruitment of presynaptic proteins","type":"exact"}],"termid":"GO:1905383"}


id: PBO:0058782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7151","termid":"PBO:0058782"}


id: FYPO:0000324
data:
  {"alleles_by_uniquename":{"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121018,121019,121020],"is_not":false,"summary":null,"term":"FYPO:0000324"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell cycle phenotype in which the onset of anaphase of the mitotic cell cycle begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"increased duration of mitotic M phase","termid":"FYPO:0000274"},{"relation_name":"is_a","term_name":"delayed cell cycle phase transition","termid":"FYPO:0000409"},{"relation_name":"is_a","term_name":"abnormal mitotic metaphase/anaphase transition","termid":"FYPO:0006477"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01956":null,"SJAG_03351":null,"SJAG_03575":null},"genotype_count":3,"genotypes_by_uniquename":{"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000631","FYPO:0001985"],"is_obsolete":false,"name":"mitotic metaphase/anaphase transition delay","references_by_uniquename":{"PMID:23786411":null},"secondary_identifiers":["FYPO:0000393","FYPO:0004309"],"single_locus_annotated_genes":["SJAG_03351","SJAG_03575","SJAG_01956"],"single_locus_genotype_uniquenames":["cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"cell cycle passage through the metaphase-anaphase transition: delayed","type":"related"},{"name":"delayed cell cycle passage through mitotic metaphase-anaphase transition","type":"exact"},{"name":"delayed mitotic anaphase B","type":"narrow"},{"name":"delayed mitotic metaphase/anaphase transition","type":"exact"},{"name":"delayed onset of anaphase B during mitotic cell cycle","type":"narrow"},{"name":"delayed onset of mitotic anaphase","type":"exact"},{"name":"delayed onset of mitotic anaphase B","type":"narrow"},{"name":"delayed onset of mitotic anaphase B during vegetative growth","type":"narrow"},{"name":"increased duration of metaphase during mitosis","type":"related"},{"name":"increased duration of mitotic metaphase","type":"related"},{"name":"metaphase/anaphase transition delay during mitotic cell cycle","type":"exact"},{"name":"mitotic anaphase delay","type":"exact"},{"name":"mitotic cell cycle delay at metaphase/anaphase transition","type":"exact"},{"name":"mitotic metaphase/anaphase transition delay during vegetative growth","type":"exact"},{"name":"transient cell cycle arrest in mitotic metaphase","type":"exact"}],"termid":"FYPO:0000324","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0000324":null}}


id: PBO:0035908
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_microtubule_depolymerization","termid":"PBO:0035908"}


id: GO:0045023
data:
  {"annotated_genes":["SJAG_02621","SJAG_03689","SJAG_03356"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117823,119948,101347],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0070317"}]},"cv_name":"biological_process","definition":"The mitotic cell cycle phase transition whose occurrence commits the cell from the G0 quiescent state to the G1 phase. Under certain conditions, cells exit the cell cycle during G1 and remain in the G0 state as nongrowing, non-dividing (quiescent) cells. Appropriate stimulation of such cells induces them to return to G1 and resume growth and division. The G0 to G1 transition is accompanied by many changes in the program of gene expression.","definition_xrefs":["ISBN:0716731363","GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02621":null,"SJAG_03356":null,"SJAG_03689":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"G0 to G1 transition","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0045023","terms_by_termid":{"GO:0070317":null}}


id: GO:0032745
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-21 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-21 production","termid":"GO:0032665"},{"relation_name":"positively_regulates","term_name":"interleukin-21 production","termid":"GO:0032625"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of interleukin-21 production","secondary_identifiers":["GO:0045392"],"synonyms":[{"name":"activation of interleukin-21 production","type":"narrow"},{"name":"positive regulation of IL-21 production","type":"exact"},{"name":"positive regulation of interleukin-21 biosynthetic process","type":"narrow"},{"name":"stimulation of interleukin-21 production","type":"narrow"},{"name":"up regulation of interleukin-21 production","type":"exact"},{"name":"up-regulation of interleukin-21 production","type":"exact"},{"name":"upregulation of interleukin-21 production","type":"exact"}],"termid":"GO:0032745"}


id: FYPO:0000003
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_00364:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00364","name":"rad3delta","uniquename":"SJAG_00364:allele-1"},"SJAG_00370:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00370","name":"erg1delta","uniquename":"SJAG_00370:allele-1"},"SJAG_00409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00409","name":"gpd1delta","uniquename":"SJAG_00409:allele-1"},"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"},"SJAG_00429:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00429","name":"rad26delta","uniquename":"SJAG_00429:allele-1"},"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_00601:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00601","name":"rip1delta","uniquename":"SJAG_00601:allele-1"},"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_01205:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01205","name":"crb2delta","uniquename":"SJAG_01205:allele-1"},"SJAG_01242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01242","name":"vps32delta","uniquename":"SJAG_01242:allele-1"},"SJAG_01355:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01355","name":"cox6delta","uniquename":"SJAG_01355:allele-1"},"SJAG_01410:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01410","name":"rad51delta","uniquename":"SJAG_01410:allele-1"},"SJAG_01605:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01605","name":"rad9delta","uniquename":"SJAG_01605:allele-1"},"SJAG_01680:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01680","name":"chk1delta","uniquename":"SJAG_01680:allele-1"},"SJAG_01753:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01753","name":"mdh1delta","uniquename":"SJAG_01753:allele-1"},"SJAG_01787:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01787","name":"pck1delta","uniquename":"SJAG_01787:allele-1"},"SJAG_01794:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01794","name":"scd2delta","uniquename":"SJAG_01794:allele-1"},"SJAG_01946:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01946","name":"cem1delta","uniquename":"SJAG_01946:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K 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cold sensitive","gene_uniquename":"SJAG_03198","name":"oar2-51","uniquename":"SJAG_03198:allele-2"},"SJAG_03198:allele-3":{"allele_type":"amino_acid_mutation","description":"R72A,L75A,R106A,L109A","gene_uniquename":"SJAG_03198","name":"oar2-dm12","synonyms":[{"name":"destruction box mutations","reference":"PMID:23786411","type":"exact"}],"uniquename":"SJAG_03198:allele-3"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T 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ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]},"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression":{"display_name":"oar2-51(Y189D cold sensitive)[Overexpression]","display_uniquename":"oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03198:allele-2","expression":"Overexpression"}]}]},"oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression":{"display_name":"oar2-dm12(R72A,L75A,R106A,L109A 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type"}]}]},"pka1delta":{"display_name":"pka1delta","display_uniquename":"pka1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04312:allele-1","expression":"Null"}]}]},"pmk1delta":{"display_name":"pmk1delta","display_uniquename":"pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]},"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"rad26delta":{"display_name":"rad26delta","display_uniquename":"rad26delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00429:allele-1","expression":"Null"}]}]},"rad3delta":{"display_name":"rad3delta","display_uniquename":"rad3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00364:allele-1","expression":"Null"}]}]},"rad51delta":{"display_name":"rad51delta","display_uniquename":"rad51delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01410:allele-1","expression":"Null"}]}]},"rad9delta":{"display_name":"rad9delta","display_uniquename":"rad9delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01605:allele-1","expression":"Null"}]}]},"ras1delta":{"display_name":"ras1delta","display_uniquename":"ras1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03453:allele-1","expression":"Null"}]}]},"rdp1delta":{"display_name":"rdp1delta","display_uniquename":"rdp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03356:allele-1","expression":"Null"}]}]},"rip1delta":{"display_name":"rip1delta","display_uniquename":"rip1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00601:allele-1","expression":"Null"}]}]},"scd1delta":{"display_name":"scd1delta","display_uniquename":"scd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00514:allele-1","expression":"Null"}]}]},"scd2delta":{"display_name":"scd2delta","display_uniquename":"scd2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01794:allele-1","expression":"Null"}]}]},"sdh3delta":{"display_name":"sdh3delta","display_uniquename":"sdh3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03920:allele-1","expression":"Null"}]}]},"shc1delta":{"display_name":"shc1delta","display_uniquename":"shc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03360:allele-1","expression":"Null"}]}]},"stc1delta":{"display_name":"stc1delta","display_uniquename":"stc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02409:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]},"tel1delta":{"display_name":"tel1delta","display_uniquename":"tel1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03720:allele-1","expression":"Null"}]}]},"vps32delta":{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]},"vps4delta":{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]},"wcs1delta":{"display_name":"wcs1delta","display_uniquename":"wcs1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02860:allele-1","expression":"Null"}]}]},"wcs2delta":{"display_name":"wcs2delta","display_uniquename":"wcs2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05242:allele-1","expression":"Null"}]}]}},"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_02668","SJAG_04574","SJAG_01946","SJAG_01205","SJAG_03118","SJAG_03689","SJAG_03198","SJAG_03575","SJAG_01680","SJAG_02621"],"name":"cell 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yeast cell population phenotype","type":"exact"}],"termid":"FYPO:0000003","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000078":null,"FYECO:0000081":null,"FYECO:0000103":null,"FYECO:0000117":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYECO:0000207":null,"FYECO:0000272":null,"FYECO:0000314":null,"FYECO:0000315":null,"FYPO:0000079":null,"FYPO:0000080":null,"FYPO:0000082":null,"FYPO:0000085":null,"FYPO:0000087":null,"FYPO:0000088":null,"FYPO:0000097":null,"FYPO:0000106":null,"FYPO:0000107":null,"FYPO:0000245":null,"FYPO:0000271":null,"FYPO:0000584":null,"FYPO:0000588":null,"FYPO:0000674":null,"FYPO:0000708":null,"FYPO:0000714":null,"FYPO:0000726":null,"FYPO:0000841":null,"FYPO:0001214":null,"FYPO:0001234":null,"FYPO:0001355":null,"FYPO:0001357":null,"FYPO:0001387":null,"FYPO:0001408":null,"FYPO:0001419":null,"FYPO:0001690":null,"FYPO:0002058":null,"FYPO:0002061":null,"FYPO:0003535":null,"FYPO:0004481":null,"FYPO:0004693":null,"FYPO:0005152":null,"FYPO:0005231":null,"FYPO:0005705":null,"FYPO:0005883":null,"FYPO:0007521":null,"FYPO:0007522":null,"FYPO:0008046":null,"FYPO:0009111":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"FYPO_EXT:0000003":null}}


id: PBO:0048146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FXYD domain containing ion transport regulator 6 pseudogene 2","termid":"PBO:0048146"}


id: PBO:0017942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginine transmembrane transporter Can1","termid":"PBO:0017942"}


id: PR:O74340
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DDB1- and CUL4-associated factor 13 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03079","PRO:DNx","PANTHER:PTHR22851:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein sof1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1A4.07c","secondary_identifiers":["UniProtKB:O74340"],"synonyms":[{"name":"Spom972h-DCAF13","type":"exact"},{"name":"U3 small nucleolar RNA-associated protein sof1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"U3 snoRNA-associated protein sof1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74340"}


id: MONDO:0018373
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Necrotic changes in the bone tissue due to interruption of blood supply. Most often affecting the epiphysis of the long bones, the necrotic changes result in the collapse and the destruction of the bone structure.","definition_xrefs":["NCIT:C34841"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteonecrosis","termid":"MONDO:0005380"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"avascular necrosis","secondary_identifiers":["MEDGEN:10200","GARD:21658","SCTID:397758007","Orphanet:399164","UMLS:C0027543"],"synonyms":[{"name":"AVN","type":"exact"},{"name":"avascular necrosis of bone","type":"exact"}],"termid":"MONDO:0018373","xrefs":{"Monarch":{"xref_id":"0018373"}}}


id: MONDO:0002045
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An abnormal accumulation of cerebrospinal fluid within the ventricles of the brain that occurs as a consequence of impaired cerebrospinal fluid reabsorption by the arachnoid granulations.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrocephalus","termid":"MONDO:0001150"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"communicating hydrocephalus","secondary_identifiers":["NCIT:C34501","ICD9:331.3","SCTID:271569006","icd11.foundation:186577228","UMLS:C0009451","DOID:1573","ICD10CM:G91.0","MEDGEN:1058"],"synonyms":[{"name":"non-obstructive hydrocephalus","type":"exact"}],"termid":"MONDO:0002045","xrefs":{"Monarch":{"xref_id":"0002045"}}}


id: MONDO:0005605
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign papillary neoplasm composed of transitional cells which show preservation of the nuclear polarity.","definition_xrefs":["NCIT:C4115"],"direct_ancestors":[{"relation_name":"is_a","term_name":"papilloma","termid":"MONDO:0002363"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transitional cell papilloma","secondary_identifiers":["DOID:2670","ICDO:8120/0","MEDGEN:137734","UMLS:C0334266","EFO:0006497"],"synonyms":[{"name":"papilloma, transitional cell, benign","type":"exact"},{"name":"transitional cell papilloma","type":"exact"},{"name":"transitional cell papilloma NOS (morphologic abnormality)","type":"exact"},{"name":"transitional cell papilloma, benign","type":"exact"},{"name":"transitional cell papilloma, benign (morphologic abnormality)","type":"exact"},{"name":"transitional papilloma","type":"exact"}],"termid":"MONDO:0005605","xrefs":{"Monarch":{"xref_id":"0005605"}}}


id: PBO:0031682
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_peroxisome_degradation","termid":"PBO:0031682"}


id: PBO:0017716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex, platform subcomplex scaffold TPR subunit Apc5","termid":"PBO:0017716"}


id: GO:0090432
data:
  {"annotated_genes":["SJAG_03471","SJAG_03909"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[107401,115262],"is_not":false,"summary":null,"term":"GO:0090432"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + myristic acid + CoA = AMP + diphosphate + myristoyl-CoA.","definition_xrefs":["PMID:18071249","GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty acid-CoA ligase activity","termid":"GO:0004467"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03471":null,"SJAG_03909":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"myristoyl-CoA ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"myristoyl-CoA synthetase activity","type":"exact"}],"termid":"GO:0090432","terms_by_termid":{"GO:0090432":null}}


id: GO:0033477
data:
  {"annotated_genes":["SJAG_04425"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78021],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033528"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving S-methyl-methionine (SMM). SMM can be converted to methionine by donating a methyl group to homocysteine, and concurrent operation of this reaction and that mediated by MMT sets up the SMM cycle.","definition_xrefs":["GOC:mah","PMID:12692340"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified amino acid metabolic process","termid":"GO:0006575"},{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04425":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"S-methylmethionine metabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"S-methylmethionine metabolism","type":"exact"}],"termid":"GO:0033477","terms_by_termid":{"GO:0033528":null}}


id: FYPO:0003419
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of malate dehydrogenase (decarboxylating) (NAD+) activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal malate dehydrogenase (decarboxylating) (NAD+) activity","termid":"FYPO:0002621"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000654","FYPO:0000661","FYPO:0000652"],"is_obsolete":false,"name":"increased malate dehydrogenase (decarboxylating) (NAD+) activity","synonyms":[{"name":"increased 'malic' enzyme activity","type":"related"},{"name":"increased (S)-malate:NAD+ oxidoreductase (oxaloacetate-decarboxylating) activity","type":"exact"},{"name":"increased NAD-linked malic enzyme activity","type":"related"},{"name":"increased NAD-malic enzyme activity","type":"broad"},{"name":"increased NAD-specific malic enzyme activity","type":"related"},{"name":"increased malate dehydrogenase (oxaloacetate-decarboxylating) activity","type":"exact"}],"termid":"FYPO:0003419"}


id: PBO:0067596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 759, pseudogene","termid":"PBO:0067596"}


id: GO:0098590
data:
  {"annotated_genes":["SJAG_02916","SJAG_01189","SJAG_05285","SJAG_02222","SJAG_04358","SJAG_02684","SJAG_02258","SJAG_01888","SJAG_01738","SJAG_04509","SJAG_00514","SJAG_04668","SJAG_00368","SJAG_01660","SJAG_04905","SJAG_04001","SJAG_01983","SJAG_02572","SJAG_01978","SJAG_01353","SJAG_02924","SJAG_02351","SJAG_01114","SJAG_04714","SJAG_03608","SJAG_04620","SJAG_01388","SJAG_04167","SJAG_01345","SJAG_01437","SJAG_02989","SJAG_04637","SJAG_01794","SJAG_04673","SJAG_03536","SJAG_03915"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[101543,91629,107906,108847,117649,89646,94164],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032154"},{"annotations":[89755,93050],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0090689"},{"annotations":[108398],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0106186"},{"annotations":[89903,100761],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070250"},{"annotations":[98154,112017],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070867"},{"annotations":[90044,98775,114179,98823,94481,94170,97305,89655,112689,119058,91636,89905,117309,116222,95247,110260,104808,103581,111260,117656,102465,94262],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031520"},{"annotations":[79751],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902929"},{"annotations":[91106,105051,120395,90212],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044853"}]},"cv_name":"cellular_component","definition":"A membrane that is a (regional) part of the plasma membrane.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane","termid":"GO:0016020"},{"relation_name":"part_of","term_name":"plasma membrane","termid":"GO:0005886"}],"gene_count":36,"genes_by_uniquename":{"SJAG_00368":null,"SJAG_00514":null,"SJAG_01114":null,"SJAG_01189":null,"SJAG_01345":null,"SJAG_01353":null,"SJAG_01388":null,"SJAG_01437":null,"SJAG_01660":null,"SJAG_01738":null,"SJAG_01794":null,"SJAG_01888":null,"SJAG_01978":null,"SJAG_01983":null,"SJAG_02222":null,"SJAG_02258":null,"SJAG_02351":null,"SJAG_02572":null,"SJAG_02684":null,"SJAG_02916":null,"SJAG_02924":null,"SJAG_02989":null,"SJAG_03536":null,"SJAG_03608":null,"SJAG_03915":null,"SJAG_04001":null,"SJAG_04167":null,"SJAG_04358":null,"SJAG_04509":null,"SJAG_04620":null,"SJAG_04637":null,"SJAG_04668":null,"SJAG_04673":null,"SJAG_04714":null,"SJAG_04905":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"plasma membrane region","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"region of plasma membrane","type":"exact"}],"termid":"GO:0098590","terms_by_termid":{"GO:0031520":null,"GO:0032154":null,"GO:0044853":null,"GO:0070250":null,"GO:0070867":null,"GO:0090689":null,"GO:0106186":null,"GO:1902929":null}}


id: PBO:0082986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytosolic and mitochondrial glutathione oxidoreductase; converts oxidized glutathione to reduced glutathione; cytosolic Glr1p is the main determinant of the glutathione redox state of the mitochondrial intermembrane space; mitochondrial Glr1p has a role in resistance to hyperoxia; protein abundance increases in response to DNA replication stress","termid":"PBO:0082986"}


id: SOFP:Note
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","definition":"A GFF3 Note attribute","definition_xrefs":["so:sjc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Note","termid":"SOFP:Note"}


id: PBO:0065194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRPF4B pseudogene 1","termid":"PBO:0065194"}


id: PBO:0041767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calpain 7","termid":"PBO:0041767"}


id: PBO:0055988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat and sterile alpha motif containing 1","termid":"PBO:0055988"}


id: PBO:0048404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth arrest specific 8","termid":"PBO:0048404"}


id: FYPO:0008133
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-4-phosphate measured in a cell is lower than normal in the Golgi.","definition_xrefs":["PMID:37815455"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular phosphatidylinositol-4-phosphate level","termid":"FYPO:0006775"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased phosphatidylinositol-4-phosphate level in the Golgi","termid":"FYPO:0008133"}


id: PBO:0061749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear transport factor 2 like export factor 2","termid":"PBO:0061749"}


id: PBO:0078711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon CAG) 1-6","termid":"PBO:0078711"}


id: PBO:0028260
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-microtubules_present_in_decreased_numbers","termid":"PBO:0028260"}


id: PBO:0050597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 2","termid":"PBO:0050597"}


id: GO:0002101
data:
  {"annotated_genes":["SJAG_02099","SJAG_05249","SJAG_01877"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74062],"is_not":false,"summary":null,"term":"GO:0002101"},{"annotations":[90030,95702],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002127"}]},"cv_name":"biological_process","definition":"The process in which a cytosine in position 34 of a tRNA is post-transcriptionally modified.","definition_xrefs":["ISBN:155581073X","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA wobble base modification","termid":"GO:0002097"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01877":null,"SJAG_02099":null,"SJAG_05249":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0006399","GO:0008150"],"is_obsolete":false,"name":"tRNA wobble cytosine modification","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0002101","terms_by_termid":{"GO:0002101":null,"GO:0002127":null}}


id: MOD:00873
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to isoglutamyl glutamyl-glutamic acid, forming an isopeptide bond with a diglutamic acid.","definition_xrefs":["Unimod:451","PubMed:1680872","DeltaMass:0","PubMed:10747868","RESID:AA0202#var"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-isoglutamyl-polyglutamic acid","termid":"MOD:00207"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-isoglutamyl diglutamic acid","synonyms":[{"name":"GluGlu","type":"related"},{"name":"diglutamyl","type":"related"}],"termid":"MOD:00873"}


id: PBO:0054433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1829","termid":"PBO:0054433"}


id: PR:O13990
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- bgl2 gene.","definition_xrefs":["UniProtKB:O13990","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucan 1,3-beta-glucosidase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC26H5.08c","synonyms":[{"name":"Exo-1,3-beta-glucanase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-bgl2","type":"exact"}],"termid":"PR:O13990"}


id: GO:0001993
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the secretion of norepinephrine or epinephrine into the bloodstream modulates the force with which blood passes through the circulatory system.","definition_xrefs":["ISBN:0721643949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of systemic arterial blood pressure mediated by a chemical signal","termid":"GO:0003044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of systemic arterial blood pressure by norepinephrine-epinephrine","synonyms":[{"name":"noradrenaline-adrenaline regulation of blood pressure","type":"related"},{"name":"norepinephrine-epinephrine blood pressure control","type":"related"},{"name":"norepinephrine-epinephrine blood pressure regulation","type":"exact"}],"termid":"GO:0001993"}


id: GO:0062003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency or rate of all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity.","definition_xrefs":["PMID:23407971"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of hydrolase activity","termid":"GO:0051346"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"negative regulation of all-trans-retinyl-ester hydrolase, 11-cis retinol forming activity","termid":"GO:0062003"}


id: MONDO:1010424
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autism spectrum disorder that occurs in zebra finch.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"},{"relation_name":"is_a","term_name":"autism spectrum disorder, non-human animal","termid":"MONDO:1010005"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autism spectrum disorder, zebra finch","secondary_identifiers":["OMIA:001815-59729"],"termid":"MONDO:1010424","xrefs":{"Monarch":{"xref_id":"1010424"}}}


id: PBO:0027297
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-fragmented_septum","termid":"PBO:0027297"}


id: FYPO:0005806
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of movement of one or more proteins within the plasma membrane of the lateral part of the cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:25837586","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein movement within plasma membrane during vegetative growth","termid":"FYPO:0005804"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal rate of protein movement within plasma membrane at cell side","synonyms":[{"name":"normal rate of protein movement within plasma membrane at cell side during mitotic cell cycle","type":"related"},{"name":"normal rate of protein movement within plasma membrane at cell side during vegetative growth","type":"exact"},{"name":"normal rate of protein movement within plasma membrane at lateral part of cell","type":"exact"}],"termid":"FYPO:0005806"}


id: PBO:0085053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-essential protein of unknown function; induced by treatment with 8-methoxypsoralen and UVA irradiation; ECM13 has a paralog, YJR115W, that arose from the whole genome duplication","termid":"PBO:0085053"}


id: PBO:0030394
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-binucleate_multiseptate_vegetative_cell","termid":"PBO:0030394"}


id: MONDO:0003863
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare variant of malignant peripheral nerve sheath tumor. It is characterized by the presence of malignant cells that contain melanin.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant peripheral nerve sheath tumor","termid":"MONDO:0017827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant melanocytic neoplasm of the peripheral nerve sheath","secondary_identifiers":["MEDGEN:99184","UMLS:C0474847","SCTID:404039004","ICD9:171.9","NCIT:C4748","DOID:6345"],"synonyms":[{"name":"malignant melanocytic neoplasm of peripheral nerve sheath","type":"exact"},{"name":"malignant melanocytic neoplasm of the peripheral nerve sheath","type":"exact"},{"name":"malignant melanocytic peripheral nerve sheath tumor","type":"exact"},{"name":"malignant melanocytic peripheral nerve sheath tumour","type":"exact"},{"name":"malignant melanotic peripheral nerve sheath tumor","type":"exact"},{"name":"malignant melanotic peripheral nerve sheath tumour","type":"exact"},{"name":"melanocytic MPNST","type":"exact"},{"name":"melanotic malignant nerve sheath tumor","type":"exact"},{"name":"melanotic malignant nerve sheath tumour","type":"exact"},{"name":"melanotic malignant peripheral nerve sheath tumor","type":"exact"},{"name":"melanotic malignant peripheral nerve sheath tumor (morphologic abnormality)","type":"exact"},{"name":"melanotic malignant peripheral nerve sheath tumour","type":"exact"},{"name":"melanotic malignant peripheral nerve sheath tumour (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0003863","xrefs":{"Monarch":{"xref_id":"0003863"}}}


id: FYPO:0004690
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 9 of histone H3 at the silent mating-type cassettes occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 acetylation during vegetative growth","termid":"FYPO:0000892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002494","FYPO:0002274","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased histone H3-K9 acetylation at silent mating-type cassette during vegetative growth","synonyms":[{"name":"increased histone H3-K9 acetylation at mating-type region heterochromatin during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 acetylation at silent mating-type cassette during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 acetylation at silent mating-type cassette during vegetative growth","type":"exact"}],"termid":"FYPO:0004690"}


id: PBO:0083661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endoplasmic reticulum (ER) localized protein; involved in ER-associated protein degradation (ERAD), ER stress, and homeostasis; interacts with components of ERAD-L and ERAD-C and Cdc48p; derlin-like family member similar to Der1p","termid":"PBO:0083661"}


id: PBO:0091946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NAD-dependent glutamate dehydrogenase Gdh2","termid":"PBO:0091946"}


id: PBO:0017870
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human RanBP1","termid":"PBO:0017870"}


id: MONDO:0010393
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any non-syndromic X-linked intellectual disability in which the cause of the disease is a mutation in the BRWD3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic X-linked intellectual disability","termid":"MONDO:0019181"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intellectual disability, X-linked 93","secondary_identifiers":["MEDGEN:410164","OMIM:300659","DOID:0112045","MESH:C567066","UMLS:C1970841"],"synonyms":[{"name":"BRWD3 non-syndromic X-linked intellectual disability","type":"exact"},{"name":"MRX93","type":"related"},{"name":"intellectual developmental disorder, X-linked 93, X-linked recessive","type":"exact"},{"name":"intellectual disability, X-linked 93","type":"exact"},{"name":"intellectual disability, X-linked type 93","type":"exact"},{"name":"intellectual disability, X-linked, with macrocephaly","type":"related"},{"name":"mental retardation, X-linked 93","type":"related"},{"name":"mental retardation, X-linked type 93","type":"exact"},{"name":"mental retardation, X-linked, with macrocephaly","type":"related"},{"name":"non-syndromic X-linked intellectual disability caused by mutation in BRWD3","type":"exact"}],"termid":"MONDO:0010393","xrefs":{"Monarch":{"xref_id":"0010393"}}}


id: FYPO:0005077
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell becomes elongated, i.e. has a greater length and length:diameter ratio than normal, when the cell is subject to glucose starvation.","definition_xrefs":["PMID:17179073","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated cell","termid":"FYPO:0000017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0000002"],"is_obsolete":false,"name":"elongated cell during glucose starvation","synonyms":[{"name":"cell morphology, elongated cell during glucose starvation","type":"exact"},{"name":"elongated cell during glucose depletion","type":"exact"},{"name":"elongated cell during glucose deprivation","type":"exact"},{"name":"long cell during glucose starvation","type":"exact"}],"termid":"FYPO:0005077"}


id: PBO:0077130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TERF1 interacting nuclear factor 2","termid":"PBO:0077130"}


id: PBO:0054384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1780","termid":"PBO:0054384"}


id: GO:0019420
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The reduction of sulfate to hydrogen sulfide, which acts as a terminal electron acceptor. Sulfate is activated to adenosine-phosphosulfate (APS) which is then reduced to sulfite, which is in turn reduced to hydrogen sulfide.","definition_xrefs":["PMID:25400653","PMID:26680199"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfate assimilation","termid":"GO:0000103"},{"relation_name":"is_a","term_name":"anaerobic respiration","termid":"GO:0009061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006790","GO:0006091"],"is_obsolete":false,"name":"dissimilatory sulfate reduction","secondary_identifiers":["MetaCyc:DISSULFRED-PWY","Wikipedia:Sulfate-reducing_microorganism"],"synonyms":[{"name":"dissimilatory sulphate reduction","type":"exact"}],"termid":"GO:0019420"}


id: PBO:0042997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHFR divergent transcript","termid":"PBO:0042997"}


id: GO:0008075
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: GTP = 3',5'-cyclic GMP + diphosphate.","definition_xrefs":["EC:4.6.1.2"],"gene_count":0,"genotype_count":0,"name":"obsolete receptor guanylate cyclase activity (obsolete GO:0008075)","synonyms":[{"name":"receptor guanylate cyclase activity","type":"exact"}],"termid":"GO:0008075"}


id: PBO:0073725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLAM family member 6 pseudogene 1","termid":"PBO:0073725"}


id: FYPO:0002700
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal protein kinase activity","termid":"FYPO:0001381"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0000654","FYPO:0001985","FYPO:0000661"],"is_obsolete":false,"name":"increased protein kinase activity","termid":"FYPO:0002700"}


id: MONDO:0004454
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital mesoblastic nephroma characterized by increased cellularity, sheet-like proliferation of fibroblastic cells, and increased mitotic activity. Necrotic changes are commonly present.","definition_xrefs":["NCIT:C39815"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital mesoblastic nephroma","termid":"MONDO:0017043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005240"],"is_obsolete":false,"name":"cellular congenital mesoblastic nephroma","secondary_identifiers":["MEDGEN:729112","UMLS:C1320471","DOID:8082"],"synonyms":[{"name":"cellular congenital mesoblastic nephroma","type":"exact"}],"termid":"MONDO:0004454","xrefs":{"Monarch":{"xref_id":"0004454"}}}


id: PBO:0000698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP binding protein Sey1 (predicted)","termid":"PBO:0000698"}


id: GO:0090379
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall of seed trichomes after cell expansion is complete.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plant-type secondary cell wall biogenesis","termid":"GO:0009834"},{"relation_name":"part_of","term_name":"seed trichome differentiation","termid":"GO:0090376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0071554"],"is_obsolete":false,"name":"secondary cell wall biogenesis involved in seed trichome differentiation","synonyms":[{"name":"secondary cell wall biosynthesis involved in seed trichome differentiation","type":"exact"},{"name":"seed trichome secondary wall biosynthesis","type":"related"}],"termid":"GO:0090379"}


id: PBO:0088636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease, involved in lipid metabolism","termid":"PBO:0088636"}


id: PBO:0081695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 618","termid":"PBO:0081695"}


id: PBO:0017963
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nim1 Interacting Factor","termid":"PBO:0017963"}


id: SO:0001439
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non-polar, hydorophobic amino acid encoded by the codons CCN (CCT, CCC, CCA and CCG).","direct_ancestors":[{"relation_name":"is_a","term_name":"amino_acid","termid":"SO:0001237"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline","synonyms":[{"name":"P","type":"exact"},{"name":"Pro","type":"exact"}],"termid":"SO:0001439"}


id: MONDO:0010034
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete anosmia for butyl mercaptan (obsolete MONDO:0010034)","secondary_identifiers":["OMIM:270350"],"synonyms":[{"name":"skunk N-BUTYLMERCAPTAN, inability to smell","type":"related"},{"name":"skunk N-butyl mercaptan, inability to smell","type":"related"}],"termid":"MONDO:0010034","xrefs":{"Monarch":{"xref_id":"0010034"}}}


id: MONDO:1011643
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cardiovascular disorder, non-human animal","termid":"MONDO:1011306"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitral valve disease, non-human animal","secondary_identifiers":["OMIA:000654"],"termid":"MONDO:1011643","xrefs":{"Monarch":{"xref_id":"1011643"}}}


id: FYPO:0001745
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of biotin into the cell occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal biotin import","termid":"FYPO:0001744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased biotin import","synonyms":[{"name":"increased biotin import across plasma membrane","type":"exact"},{"name":"increased biotin import during mitotic cell cycle","type":"related"},{"name":"increased biotin import during vegetative growth","type":"exact"},{"name":"increased biotin import into cell","type":"exact"},{"name":"increased biotin uptake","type":"exact"}],"termid":"FYPO:0001745"}


id: PBO:0067622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 794, pseudogene","termid":"PBO:0067622"}


id: GO:0102848
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-18:2-2-18:2-digalactosyldiacylglycerol + O2 + a reduced electron acceptor = 1-18:3-2-18:2-digalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-18:2-2-18:2-digalactosyldiacylglycerol desaturase activity (obsolete GO:0102848)","termid":"GO:0102848"}


id: MONDO:0034104
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete global developmental delay-alopecia-macrocephaly-facial dysmorphism-structural brain anomalies syndrome (obsolete MONDO:0034104)","termid":"MONDO:0034104","xrefs":{"Monarch":{"xref_id":"0034104"}}}


id: PBO:0089790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TACC protein Alp7","termid":"PBO:0089790"}


id: GO:0016306
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A phosphoinositide 3-kinase which can only phosphorylate phosphatidylinositol.","definition_xrefs":["PMID:9759495"],"gene_count":0,"genotype_count":0,"name":"obsolete phosphatidylinositol 3-kinase activity, class III (obsolete GO:0016306)","synonyms":[{"name":"phosphatidylinositol 3-kinase activity, class III","type":"exact"}],"termid":"GO:0016306"}


id: PBO:0040704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 like 10","termid":"PBO:0040704"}


id: PBO:0062312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily V member 1","termid":"PBO:0062312"}


id: FYECO:0000091
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which cisplatin was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ cisplatin","termid":"FYECO:0000091"}


id: MONDO:0007661
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neurologic disorder caused by defective metabolism of the neurotransmitters in the brain. It is characterized by repeated involuntary movements (motor tics) and uncontrollable vocal sounds (vocal tics). The symptoms are usually manifested before the age of eighteen.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"tic disorder","termid":"MONDO:0002420"},{"relation_name":"is_a","term_name":"movement disorder","termid":"MONDO:0005395"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tourette syndrome","secondary_identifiers":["OMIM:137580","EFO:0004895","MEDGEN:21219","MESH:D005879","DOID:11119","ICD10CM:F95.2","NCIT:C35078","ICD9:307.23","SCTID:5158005","Orphanet:856","icd11.foundation:119340957","UMLS:C0040517"],"synonyms":[{"name":"GTS","type":"related"},{"name":"Gilles De 50A Tourette syndrome","type":"related"},{"name":"Gilles de la Tourette syndrome","type":"related"},{"name":"Guinon's disease","type":"exact"},{"name":"Tourette disease","type":"exact"},{"name":"Tourette disorder","type":"related"},{"name":"Tourette syndrome","type":"exact"},{"name":"Tourette's syndrome","type":"exact"},{"name":"chronic motor tics","type":"related"},{"name":"motor-verbal tic disorder","type":"exact"},{"name":"psychogenic tics","type":"exact"}],"termid":"MONDO:0007661","xrefs":{"Monarch":{"xref_id":"0007661"}}}


id: GO:0016256
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of high-mannose N-glycans by UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase and the subsequent removal of the N-acetylglucosamine residues yielding mannose-6-P that occurs in the ER-Golgi apparatus to N-glycans destined for the lysosome.","definition_xrefs":["ISBN:0879695595"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-glycan processing","termid":"GO:0006491"},{"relation_name":"part_of","term_name":"protein targeting to lysosome","termid":"GO:0006622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006605"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0006605"],"is_obsolete":false,"name":"N-glycan processing to lysosome","termid":"GO:0016256"}


id: PR:O14136
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peroxisomal membrane protein PEX13 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR19332:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisomal membrane protein pex13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3C7.10","secondary_identifiers":["UniProtKB:O14136"],"synonyms":[{"name":"SPAC3C7.10","type":"related"},{"name":"Spom972h-PEX13","type":"exact"},{"name":"peroxin-13 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14136"}


id: FYPO:0000199
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A DNA recombination phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of long tract gene conversion is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased gene conversion during vegetative growth","termid":"FYPO:0005788"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000293","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased long tract gene conversion","synonyms":[{"name":"DNA recombination defects, long tract gene conversion, increased","type":"exact"},{"name":"increased long tract gene conversion during mitotic cell cycle","type":"related"},{"name":"increased long tract gene conversion during vegetative growth","type":"exact"}],"termid":"FYPO:0000199"}


id: PBO:0077349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 88B","termid":"PBO:0077349"}


id: PBO:0089292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation elongation factor EF-1 alpha Ef1a","termid":"PBO:0089292"}


id: PBO:0077977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (CGC) 5-1","termid":"PBO:0077977"}


id: PBO:0047027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 91 member A2, pseudogene","termid":"PBO:0047027"}


id: PBO:0050045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class I, G","termid":"PBO:0050045"}


id: PBO:0059564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallothionein 1H","termid":"PBO:0059564"}


id: GO:0000450
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Endonucleolytic cleavage of pre-rRNAs originally produced as a bicistronic rRNA transcript that contains the SSU-rRNA and the LSU-rRNA in that order from 5' to 3' along the primary transcript. Primary ribosomal RNA transcripts with two genes in this order are produced in Archaeal species.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA processing","termid":"GO:0006364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0010467","GO:0044085","GO:0042254","GO:0008150"],"is_obsolete":false,"name":"cleavage of bicistronic rRNA transcript (SSU-rRNA, LSU-rRNA)","termid":"GO:0000450"}


id: FYPO:0001152
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell when the cell is subject to nitrogen starvation is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level","termid":"FYPO:0000826"},{"relation_name":"is_a","term_name":"altered level of substance in cell during nitrogen starvation","termid":"FYPO:0004139"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased RNA level during nitrogen starvation","synonyms":[{"name":"decreased RNA accumulation during nitrogen starvation","type":"related"},{"name":"decreased RNA level during nitrogen depletion","type":"exact"},{"name":"decreased RNA level during nitrogen deprivation","type":"exact"},{"name":"decreased transcript level during nitrogen starvation","type":"exact"},{"name":"reduced RNA level during nitrogen starvation","type":"exact"}],"termid":"FYPO:0001152"}


id: PBO:0001789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyoxylate reductase (predicted)","termid":"PBO:0001789"}


id: PR:Q92398
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pmk1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q92398"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase spm1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC119.08","synonyms":[{"name":"MAP kinase pmk1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"MAP kinase spm1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-pmk1","type":"exact"}],"termid":"PR:Q92398"}


id: PBO:0068017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 322","termid":"PBO:0068017"}


id: GO:0042774
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP in the plasma membrane.","definition_xrefs":["GOC:mtg_sensu","ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP synthesis coupled electron transport","termid":"GO:0042773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"part_of","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"plasma membrane ATP synthesis coupled electron transport","termid":"GO:0042774"}


id: MONDO:0014402
data:
  {"annotated_genes":["SJAG_01537"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88021],"is_not":false,"summary":null,"term":"MONDO:0014402"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary lipodystrophy","termid":"MONDO:0020087"},{"relation_name":"is_a","term_name":"inherited neurodegenerative disorder","termid":"MONDO:0024237"},{"relation_name":"is_a","term_name":"Mendelian encephalopathy","termid":"MONDO:0100198"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01537":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0005066","MONDO:0005093"],"is_obsolete":false,"name":"severe neurodegenerative syndrome with lipodystrophy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:863137","GARD:17552","Orphanet:363400","OMIM:615924","UMLS:C4014700"],"synonyms":[{"name":"PELD","type":"related"},{"name":"encephalopathy, progressive, with or without lipodystrophy","type":"related"},{"name":"severe neurodegenerative syndrome due to BSCL2 deficiency","type":"exact"}],"termid":"MONDO:0014402","terms_by_termid":{"MONDO:0014402":null},"xrefs":{"Monarch":{"xref_id":"0014402"}}}


id: GO:0048056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire the specialized features of R3 and R4 photoreceptors. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"compound eye photoreceptor cell differentiation","termid":"GO:0001751"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"R3/R4 cell differentiation","termid":"GO:0048056"}


id: PBO:0004729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial threonine ammonia-lyase (predicted)","termid":"PBO:0004729"}


id: GO:0097105
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a presynaptic membrane, including any proteins associated with the membrane, but excluding other cellular components. A presynaptic membrane is a specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction.","definition_xrefs":["GOC:pr","PMID:18550748","PMID:15797875","GOC:sjp","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane assembly","termid":"GO:0071709"},{"relation_name":"is_a","term_name":"presynaptic membrane organization","termid":"GO:0097090"},{"relation_name":"part_of","term_name":"presynapse assembly","termid":"GO:0099054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"presynaptic membrane assembly","synonyms":[{"name":"pre-synaptic membrane assembly","type":"exact"}],"termid":"GO:0097105"}


id: GO:1900892
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of pentadecane metabolic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of metabolic process","termid":"GO:0009893"},{"relation_name":"is_a","term_name":"regulation of pentadecane metabolic process","termid":"GO:1900890"},{"relation_name":"positively_regulates","term_name":"pentadecane metabolic process","termid":"GO:1900633"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of pentadecane metabolic process","synonyms":[{"name":"activation of pentadecane metabolic process","type":"narrow"},{"name":"activation of pentadecane metabolism","type":"narrow"},{"name":"positive regulation of pentadecane metabolism","type":"related"},{"name":"up regulation of pentadecane metabolic process","type":"exact"},{"name":"up regulation of pentadecane metabolism","type":"related"},{"name":"up-regulation of pentadecane metabolic process","type":"exact"},{"name":"up-regulation of pentadecane metabolism","type":"related"},{"name":"upregulation of pentadecane metabolic process","type":"exact"},{"name":"upregulation of pentadecane metabolism","type":"related"}],"termid":"GO:1900892"}


id: PBO:0071817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 12","termid":"PBO:0071817"}


id: MONDO:0004311
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that involves the bulbo-urethral gland.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Littre gland carcinoma","termid":"MONDO:0003975"},{"relation_name":"is_a","term_name":"male reproductive organ cancer","termid":"MONDO:0005836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"carcinoma of Cowper glands","secondary_identifiers":["MEDGEN:273091","UMLS:C1516284","NCIT:C39864","DOID:7632"],"synonyms":[{"name":"Cowper gland carcinoma","type":"related"},{"name":"bulbo-urethral gland carcinoma","type":"exact"},{"name":"carcinoma of Cowper glands","type":"exact"},{"name":"carcinoma of bulbo-urethral gland","type":"exact"}],"termid":"MONDO:0004311","xrefs":{"Monarch":{"xref_id":"0004311"}}}


id: GO:0006608
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a small nuclear ribonucleoprotein from the cytoplasm into the nucleus, across the nuclear membrane.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete snRNP protein import into nucleus (obsolete GO:0006608)","synonyms":[{"name":"snRNP protein import into cell nucleus","type":"exact"},{"name":"snRNP protein transport from cytoplasm to nucleus","type":"exact"},{"name":"snRNP protein-nucleus import","type":"exact"}],"termid":"GO:0006608"}


id: MONDO:0012468
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhizomelic dysplasia, scoliosis, and retinitis pigmentosa","secondary_identifiers":["UMLS:C1853197","MEDGEN:342815","MESH:C537610","OMIM:610319"],"synonyms":[{"name":"rhizomelic dysplasia, scoliosis, and retinitis pigmentosa","type":"exact"}],"termid":"MONDO:0012468","xrefs":{"Monarch":{"xref_id":"0012468"}}}


id: PBO:0074211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC41A3 antisense RNA 1","termid":"PBO:0074211"}


id: PBO:0003469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitin synthase homolog Chs2","termid":"PBO:0003469"}


id: MONDO:1010548
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Diprosopus that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diprosopus, non-human animal","termid":"MONDO:1010045"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diprosopus, cattle","secondary_identifiers":["OMIA:000290-9913"],"termid":"MONDO:1010548","xrefs":{"Monarch":{"xref_id":"1010548"}}}


id: GO:0070908
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: tyrosine(out) + tyramine(in) = tyrosine(in) + tyramine(out).","definition_xrefs":["GOC:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-tyrosine transmembrane transporter activity","termid":"GO:0005302"},{"relation_name":"is_a","term_name":"monoamine transmembrane transporter activity","termid":"GO:0008504"},{"relation_name":"is_a","term_name":"antiporter activity","termid":"GO:0015297"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"tyrosine:tyramine antiporter activity","synonyms":[{"name":"tyrosine-tyramine antiporter activity","type":"exact"},{"name":"tyrosine/tyramine antiporter activity","type":"exact"}],"termid":"GO:0070908"}


id: GO:0072185
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of the metanephric cap from an initial condition to its mature state. The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metanephric mesenchyme development","termid":"GO:0072075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric cap development","termid":"GO:0072185"}


id: MONDO:0004934
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the periosteum. The condition is generally chronic, and is marked by tenderness and swelling of the bone and an aching pain. Acute periostitis is due to infection, is characterized by diffuse suppuration, severe pain, and constitutional symptoms, and usually results in necrosis. (Dorland, 27th ed)","definition_xrefs":["MESH:D010522"],"direct_ancestors":[{"relation_name":"is_a","term_name":"connective tissue disorder","termid":"MONDO:0003900"},{"relation_name":"is_a","term_name":"bone disorder","termid":"MONDO:0005381"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"periostitis","secondary_identifiers":["HP:0040165","SCTID:41910004","UMLS:C0031111","MEDGEN:45816","icd11.foundation:505688542","NCIT:C13184","DOID:9957"],"synonyms":[{"name":"inflammation of periosteum","type":"exact"},{"name":"periosteum","type":"exact"},{"name":"periosteum inflammation","type":"exact"},{"name":"periostitis","type":"exact"},{"name":"periostitis (disease)","type":"exact"}],"termid":"MONDO:0004934","xrefs":{"Monarch":{"xref_id":"0004934"}}}


id: MONDO:0018877
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"fundus albipunctatus","termid":"MONDO:0007639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"retinitis punctata albescens","secondary_identifiers":["MEDGEN:278050","Orphanet:52427","UMLS:C1405854","SCTID:715562001","GARD:16655","ICD10CM:H35.5","icd11.foundation:567796529"],"termid":"MONDO:0018877","xrefs":{"Monarch":{"xref_id":"0018877"}}}


id: MONDO:0014326
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any nemaline myopathy in which the cause of the disease is a mutation in the KLHL41 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"severe congenital nemaline myopathy","termid":"MONDO:0015735"},{"relation_name":"is_a","term_name":"intermediate nemaline myopathy","termid":"MONDO:0015736"},{"relation_name":"is_a","term_name":"typical nemaline myopathy","termid":"MONDO:0015737"},{"relation_name":"is_a","term_name":"childhood-onset nemaline myopathy","termid":"MONDO:0015738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0002320"],"is_obsolete":false,"name":"nemaline myopathy 9","secondary_identifiers":["OMIM:615731","UMLS:C3810384","MEDGEN:816714","DOID:0110929","GARD:16007"],"synonyms":[{"name":"KLHL41 nemaline myopathy","type":"exact"},{"name":"NEM9","type":"exact"},{"name":"nemaline myopathy 9","type":"exact"},{"name":"nemaline myopathy caused by mutation in KLHL41","type":"exact"},{"name":"nemaline myopathy type 9","type":"exact"}],"termid":"MONDO:0014326","xrefs":{"Monarch":{"xref_id":"0014326"}}}


id: MONDO:1010937
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lymphosarcoma that occurs in pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porcine lymphoma","termid":"MONDO:0700198"},{"relation_name":"is_a","term_name":"lymphosarcoma, non-human animal","termid":"MONDO:1010209"},{"relation_name":"is_a","term_name":"cancer, pig","termid":"MONDO:1012572"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphosarcoma, pig","secondary_identifiers":["OMIA:000615-9823"],"termid":"MONDO:1010937","xrefs":{"Monarch":{"xref_id":"1010937"}}}


id: GO:2000272
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of a signaling receptor activity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signaling receptor activity","termid":"GO:0010469"},{"relation_name":"is_a","term_name":"negative regulation of molecular function","termid":"GO:0044092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of signaling receptor activity","synonyms":[{"name":"negative regulation of receptor activity","type":"broad"},{"name":"negative regulation of signalling receptor activity","type":"exact"}],"termid":"GO:2000272"}


id: MONDO:0013815
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial bent bone dysplasia syndrome","termid":"MONDO:0031615"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bent bone dysplasia syndrome 1","secondary_identifiers":["GARD:10965","OMIM:614592","Orphanet:313855","MEDGEN:482877","UMLS:C3281247"],"synonyms":[{"name":"BBDS","type":"related"},{"name":"FGFR2-related bent bone dysplasia","type":"exact"},{"name":"bent bone dysplasia (BBD)-FGFR2 type","type":"related"},{"name":"bent bone dysplasia syndrome","type":"related"},{"name":"perinatal lethal bent bone dysplasia","type":"exact"}],"termid":"MONDO:0013815","xrefs":{"Monarch":{"xref_id":"0013815"}}}


id: MONDO:0040698
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"bursitis","termid":"MONDO:0002471"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"subacute bursitis","secondary_identifiers":["MEDGEN:712544","SCTID:109298000","UMLS:C1290159"],"synonyms":[{"name":"subacute bursitis","type":"exact"}],"termid":"MONDO:0040698","xrefs":{"Monarch":{"xref_id":"0040698"}}}


id: GO:0106216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vesicle fusion with Golgi apparatus.","definition_xrefs":["GOC:se","PMID:26195667"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of vesicle fusion","termid":"GO:0031340"},{"relation_name":"is_a","term_name":"regulation of vesicle fusion with Golgi apparatus","termid":"GO:0106214"},{"relation_name":"positively_regulates","term_name":"vesicle fusion with Golgi apparatus","termid":"GO:0048280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0061024","GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"positive regulation of vesicle fusion with Golgi apparatus","termid":"GO:0106216"}


id: PBO:0058919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"miRlet-7a-1/let-7f-1/let-7d cluster host gene","termid":"PBO:0058919"}


id: PBO:0086758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; proposed to be involved in iron or copper homeostasis; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies","termid":"PBO:0086758"}


id: PBO:0059555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-Trp (UGA/G)","termid":"PBO:0059555"}


id: MONDO:0014915
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cranioectodermal dysplasia","termid":"MONDO:0009032"},{"relation_name":"is_a","term_name":"Jeune syndrome","termid":"MONDO:0018770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005497","MONDO:0005240","MONDO:0006025","MONDO:0005093"],"is_obsolete":false,"name":"short-rib thoracic dysplasia 16 with or without polydactyly","secondary_identifiers":["OMIM:617102","UMLS:C4310718","MEDGEN:934685","GARD:16189"],"synonyms":[{"name":"SRTD16","type":"exact"},{"name":"short-rib thoracic dysplasia 16 with or without polydactyly","type":"exact"},{"name":"short-rib thoracic dysplasia 16 with or without polydactyly; SRTD16","type":"exact"}],"termid":"MONDO:0014915","xrefs":{"Monarch":{"xref_id":"0014915"}}}


id: MONDO:0012085
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary ciliary dyskinesia in which the cause of the disease is a mutation in the DNAH5 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary ciliary dyskinesia","termid":"MONDO:0016575"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary ciliary dyskinesia 3","secondary_identifiers":["MEDGEN:325210","MESH:C535278","NCIT:C172392","OMIM:608644","UMLS:C1837618","GARD:15436","DOID:0110599"],"synonyms":[{"name":"CILD3","type":"exact"},{"name":"DNAH5 primary ciliary dyskinesia","type":"exact"},{"name":"ciliary dyskinesia, primary, 3","type":"related"},{"name":"ciliary dyskinesia, primary, 3, with or without situs inversus","type":"related"},{"name":"ciliary dyskinesia, primary, type 3","type":"exact"},{"name":"primary ciliary dyskinesia 3","type":"exact"},{"name":"primary ciliary dyskinesia 3 with or without situs inversus","type":"exact"},{"name":"primary ciliary dyskinesia caused by mutation in DNAH5","type":"exact"},{"name":"primary ciliary dyskinesia type 3","type":"exact"}],"termid":"MONDO:0012085","xrefs":{"Monarch":{"xref_id":"0012085"}}}


id: PBO:0017754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial citrate transmembrane transporter (predicted)","termid":"PBO:0017754"}


id: PBO:0059068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myelin associated oligodendrocyte basic protein","termid":"PBO:0059068"}


id: MONDO:0001034
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"corneal ulcer","termid":"MONDO:0004577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"marginal corneal ulcer","secondary_identifiers":["DOID:10441","SCTID:47398006","ICD9:370.01","MEDGEN:509765","ICD10CM:H16.04","UMLS:C0155067","icd11.foundation:2035123281"],"termid":"MONDO:0001034","xrefs":{"Monarch":{"xref_id":"0001034"}}}


id: PBO:0058899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 12117","termid":"PBO:0058899"}


id: PBO:0073575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shisa family member 6","termid":"PBO:0073575"}


id: GO:0016268
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc or Core 1) to form the core 2 O-glycan structure, GlcNAc-beta-(1->6)[Gal-beta-(1->3)]-GalNAc.","definition_xrefs":["PMID:33775405","PMID:10580130"],"gene_count":0,"genotype_count":0,"name":"obsolete core 2 O-glycan biosynthetic process (obsolete GO:0016268)","synonyms":[{"name":"O-glycan processing, core 2","type":"exact"},{"name":"core 2 O-glycan biosynthesis","type":"exact"}],"termid":"GO:0016268"}


id: PBO:0064189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group XIIB","termid":"PBO:0064189"}


id: GO:0048203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which vesicles are directed to specific destination membranes during transport from the trans-Golgi to the endosome.","definition_xrefs":["ISBN:0716731363","GOC:mah","PMID:10219233","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle targeting, to, from or within Golgi","termid":"GO:0048199"},{"relation_name":"part_of","term_name":"Golgi to endosome transport","termid":"GO:0006895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"vesicle targeting, trans-Golgi to endosome","synonyms":[{"name":"trans-Golgi to endosome targeting","type":"exact"}],"termid":"GO:0048203"}


id: PBO:0069709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 989, pseudogene","termid":"PBO:0069709"}


id: PBO:0046504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E2F1-regulated inhibitor of cell death","termid":"PBO:0046504"}


id: PBO:0030088
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_leucine_nitrogen_source","termid":"PBO:0030088"}


id: PBO:0067837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 139","termid":"PBO:0067837"}


id: PBO:0054472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1872","termid":"PBO:0054472"}


id: PBO:0109352
data:
  {"annotation_feature_type":"gene","cv_name":"subunit_composition","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homomeric(16)","termid":"PBO:0109352"}


id: MONDO:0004232
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A squamous cell carcinoma that arises from the breast parenchyma and is characterized by the presence of large malignant cells that exhibit keratinization.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"keratinizing squamous cell carcinoma","termid":"MONDO:0005056"},{"relation_name":"is_a","term_name":"squamous cell breast carcinoma","termid":"MONDO:0006056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"large cell keratinizing variant squamous cell breast carcinoma","secondary_identifiers":["DOID:7461","NCIT:C40357","MEDGEN:274269","UMLS:C1519486"],"synonyms":[{"name":"squamous cell breast carcinoma, large cell keratinizing variant","type":"exact"}],"termid":"MONDO:0004232","xrefs":{"Monarch":{"xref_id":"0004232"}}}


id: MONDO:0016518
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A punctate palmoplantar keratoderma that is not part of a larger syndrome.","definition_xrefs":["MONDO:patterns/isolated"],"gene_count":0,"genotype_count":0,"name":"obsolete isolated punctate palmoplantar keratoderma (obsolete MONDO:0016518)","secondary_identifiers":["Orphanet:2338"],"synonyms":[{"name":"isolated punctate PPK","type":"exact"},{"name":"isolated punctate palmoplantar hyperkeratosis","type":"exact"},{"name":"nonsyndromic punctate palmoplantar keratoderma","type":"exact"}],"termid":"MONDO:0016518","xrefs":{"Monarch":{"xref_id":"0016518"}}}


id: PBO:0061428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 1 group D member 2","termid":"PBO:0061428"}


id: GO:0001584
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A G protein-coupled receptor that is structurally/functionally related to the rhodopsin receptor.","definition_xrefs":["IUPHAR_GPCR:1505","GOC:tb","GOC:mah","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete rhodopsin-like receptor activity (obsolete GO:0001584)","synonyms":[{"name":"Class A G protein coupled receptor","type":"exact"},{"name":"Class A G-protein coupled receptor","type":"exact"},{"name":"Class A GPCR","type":"exact"},{"name":"class A orphan receptor activity","type":"exact"},{"name":"rhodopsin-like receptor activity","type":"exact"}],"termid":"GO:0001584"}


id: PR:Q10066
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- aru1 gene.","definition_xrefs":["UniProtKB:Q10066","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginase Aru1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H1.07","synonyms":[{"name":"SPAC3H1.07","type":"related"},{"name":"Spom972h-aru1","type":"exact"}],"termid":"PR:Q10066"}


id: GO:0052006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism in its host resulting in the breakdown of substances. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete catabolism by symbiont of substance in host (obsolete GO:0052006)","synonyms":[{"name":"catabolism by organism of substance in host","type":"exact"}],"termid":"GO:0052006"}


id: PBO:0044414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily S member 1","termid":"PBO:0044414"}


id: PBO:0039432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANK2 antisense RNA 1","termid":"PBO:0039432"}


id: PBO:0052721
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 13","termid":"PBO:0052721"}


id: PBO:0038405
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-causally_upstream_of_or_within,_positive_effect","termid":"PBO:0038405"}


id: PR:Q10482
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A lysosomal amino acid transporter 1 homolog that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01857"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"seven transmembrane protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17C9.10","secondary_identifiers":["UniProtKB:Q10482"],"synonyms":[{"name":"Spom972h-PQLC2","type":"exact"}],"termid":"PR:Q10482"}


id: MONDO:0013178
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital muscular dystrophy due to LMNA mutation is a rare congenital muscular dystrophy characterized by prominent axial hypotonia, dropped head syndrome, predominantly proximal muscle weakness in upper limbs/distal in lower limbs (with absent, poor or lost motor development), joint contractures (initially distal, later proximal), spine rigidity, and early respiratory insufficiency, in the presence of moderately elevated serum creatine kinase. Cardiac arrhythmias and sudden death have been also reported.","definition_xrefs":["Orphanet:157973"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital muscular dystrophy","termid":"MONDO:0019950"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005336"],"is_obsolete":false,"name":"congenital muscular dystrophy due to LMNA mutation","secondary_identifiers":["MESH:C567708","NCIT:C148369","NANDO:2200866","OMIM:613205","MEDGEN:413043","GARD:12585","DOID:0110640","UMLS:C2750785"],"synonyms":[{"name":"L-CMD","type":"exact"},{"name":"LMNA congenital muscular dystrophy","type":"exact"},{"name":"LMNA-related congenital muscular dystrophy","type":"exact"},{"name":"MDCL","type":"related"},{"name":"congenital muscular dystrophy LMNA-related","type":"exact"},{"name":"congenital muscular dystrophy caused by mutation in LMNA","type":"exact"},{"name":"muscular dystrophy Congenital, LMNA-related","type":"exact"},{"name":"muscular dystrophy, congenital","type":"exact"},{"name":"muscular dystrophy, congenital, LMNA-related","type":"related"}],"termid":"MONDO:0013178","xrefs":{"Monarch":{"xref_id":"0013178"}}}


id: FYPO:0001237
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing cadmium ions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0002058","FYPO:0000257","FYPO:0000139","FYPO:0000003","FYPO:0002060"],"is_obsolete":false,"name":"normal growth on cadmium","synonyms":[{"name":"normal cell population growth in presence of cadmium","type":"exact"},{"name":"normal cell population growth on cadmium","type":"exact"},{"name":"normal cell population growth on cadmium ion","type":"exact"},{"name":"normal cellular response to cadmium","type":"related"},{"name":"normal growth on cadmium ions","type":"exact"},{"name":"normal vegetative cell population growth on cadmium","type":"exact"}],"termid":"FYPO:0001237"}


id: GO:0075106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont modulates the frequency, rate or extent of the host adenylate cyclase activity, which involves catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by symbiont of host adenylate cyclase activity (obsolete GO:0075106)","synonyms":[{"name":"Modulation by symbiont of host 3',5'-cyclic AMP synthetase activity","type":"exact"},{"name":"Modulation by symbiont of host ATP diphosphate-lyase (cyclizing ; 3',5'-cyclic-AMP-forming) activity","type":"exact"},{"name":"Modulation by symbiont of host ATP diphosphate-lyase (cyclizing) activity","type":"exact"},{"name":"Modulation by symbiont of host ATP pyrophosphate-lyase activity","type":"exact"},{"name":"Modulation by symbiont of host adenyl cyclase activity","type":"exact"},{"name":"Modulation by symbiont of host adenylyl cyclase activity","type":"exact"},{"name":"Modulation by symbiont of host adenylylcyclase activity","type":"exact"},{"name":"Modulation by symbiont of host cAMP generating peptide activity","type":"related"}],"termid":"GO:0075106"}


id: PBO:0114383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane cysteine transmembrane transporter","termid":"PBO:0114383"}


id: FYPO:0000727
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cytokinesis phenotype observed in the vegetative growth phase of the life cycle in which the assembly and distribution of cytoskeletal structures comprising actin filaments does not occur normally.","definition_xrefs":["GO:0007015","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton organization during vegetative growth","termid":"FYPO:0000801"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0004803","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal actin filament organization during vegetative growth","synonyms":[{"name":"abnormal actin filament organisation during vegetative growth","type":"exact"},{"name":"abnormal actin filament organization during mitotic cell cycle","type":"related"},{"name":"abnormal regulation of actin filament localization during vegetative growth","type":"narrow"}],"termid":"FYPO:0000727"}


id: MONDO:0018842
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Primary effusion lymphoma (PEL) is a large B-cell lymphoma located in the body cavities, characterized by pleural, peritoneal, and pericardial fluid lymphomatous effusions and that is always associated with human herpes virus-8 (HHV-8).","definition_xrefs":["Orphanet:48686"],"direct_ancestors":[{"relation_name":"is_a","term_name":"human herpesvirus 8-related tumor","termid":"MONDO:0015157"},{"relation_name":"is_a","term_name":"Epstein-Barr virus-associated malignant lymphoproliferative disorder","termid":"MONDO:0017343"},{"relation_name":"is_a","term_name":"diffuse large B-cell lymphoma","termid":"MONDO:0018905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"primary effusion lymphoma","secondary_identifiers":["MedDRA:10065857","NCIT:C6915","ONCOTREE:PEL","MESH:D054685","SCTID:713516007","MEDGEN:220953","EFO:1000491","ICDO:9678/3","icd11.foundation:697911710","GARD:9247","ICD9:202.80","UMLS:C1292753"],"synonyms":[{"name":"AIDS-related lymphoma","type":"related"},{"name":"PEL","type":"exact"},{"name":"body cavity-based lymphoma","type":"exact"},{"name":"primary Effusion Lymphoma","type":"exact"}],"termid":"MONDO:0018842","xrefs":{"Monarch":{"xref_id":"0018842"}}}


id: PBO:0002570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"p150-Glued","termid":"PBO:0002570"}


id: FYPO:0000746
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patch internalization does not occur. Actin cortical patch internalization is the process in which the patch moves from the cell surface to the inside of the cell.","definition_xrefs":["PMID:21620704","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cortical patch internalization","termid":"FYPO:0000743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0004803","FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished actin cortical patch internalization","synonyms":[{"name":"abolished F-actin patch internalization","type":"exact"},{"name":"abolished actin cortical patch internalisation","type":"exact"},{"name":"abolished actin cortical patch internalization during mitotic cell cycle","type":"related"},{"name":"abolished actin cortical patch internalization during vegetative growth","type":"exact"},{"name":"abolished actin patch internalization","type":"exact"},{"name":"actin cortical patch internalization abolished","type":"exact"}],"termid":"FYPO:0000746"}


id: PBO:0081382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF222 divergent transcript","termid":"PBO:0081382"}


id: GO:0060949
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of cells to a cardiac vascular smooth muscle cell fate and its capacity to differentiate into a cardiac vascular smooth muscle cell.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac cell fate commitment","termid":"GO:0060911"},{"relation_name":"is_a","term_name":"vascular associated smooth muscle cell fate commitment","termid":"GO:0097081"},{"relation_name":"part_of","term_name":"cardiac vascular smooth muscle cell differentiation","termid":"GO:0060947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac vascular smooth muscle cell fate commitment","synonyms":[{"name":"heart vascular smooth muscle cell fate commitment","type":"exact"}],"termid":"GO:0060949"}


id: GO:0010617
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the concentration of cytosolic free calcium ion [Ca2+]cyt with a regularity of approximately 24 hours.","definition_xrefs":["PMID:17982000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"circadian rhythm","termid":"GO:0007623"},{"relation_name":"is_a","term_name":"regulation of cytosolic calcium ion concentration","termid":"GO:0051480"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098771"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0098771","GO:0008150"],"is_obsolete":false,"name":"circadian regulation of calcium ion oscillation","synonyms":[{"name":"circadian regulation of Ca2+ oscillation","type":"related"},{"name":"circadian regulation of [Ca2+]cyt oscillation","type":"related"},{"name":"circadian regulation of cytosolic calcium ion homeostasis","type":"exact"},{"name":"circadian regulation of cytosolic free calcium ion oscillation","type":"related"}],"termid":"GO:0010617"}


id: GO:0005053
data:
  {"annotated_genes":["SJAG_00326"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72332],"is_not":false,"summary":null,"term":"GO:0005053"}]},"cv_name":"molecular_function","definition":"Binding to a type 2 peroxisome targeting signal, a nonapeptide with a broad consensus sequence of (R/K)-(L/V/I)-(XXXXX)-(H/Q)-(L/A/F).","definition_xrefs":["GOC:mah","PMID:11687502"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxisome targeting sequence binding","termid":"GO:0000268"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00326":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005048"}],"interesting_parent_ids":["GO:0005048","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"peroxisome matrix targeting signal-2 binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"PEX7","type":"narrow"},{"name":"PTS2 binding","type":"exact"},{"name":"PTS2 receptor","type":"exact"},{"name":"peroxisomal targeting signal 2 (PTS2) binding","type":"exact"},{"name":"peroxisome targeting signal-2 binding","type":"exact"},{"name":"peroxisome targeting signal-2 receptor","type":"narrow"}],"termid":"GO:0005053","terms_by_termid":{"GO:0005053":null}}


id: MONDO:1030010
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cerebrovascular disorder characterized by an abnormal narrowing of a precerebral artery.","definition_xrefs":["SCTID:1055001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebrovascular disorder","termid":"MONDO:0011057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"precerebral artery stenosis","secondary_identifiers":["UMLS:C0265089","ICD10CM:I65","MEDGEN:539068"],"synonyms":[{"name":"narrowing of precerebral artery","type":"exact"}],"termid":"MONDO:1030010","xrefs":{"Monarch":{"xref_id":"1030010"}}}


id: PATO:0002116
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A composition quality inhering in exudate by virtue of the bearer's containing fibrin.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"composition","termid":"PATO:0000025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibrinopurulent","termid":"PATO:0002116"}


id: GO:0018755
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-chloro-4-hydroxy-6-amino-1,3,5-triazine + OH- = 2,4-dihydroxy-6-amino-1,3,5-triazine + Cl-.","definition_xrefs":["UM-BBD_reactionID:r1414"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016810"],"is_obsolete":false,"name":"2-chloro-4-hydroxy-6-amino-1,3,5-triazine aminohydrolase activity","termid":"GO:0018755"}


id: MONDO:0018869
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cobblestone lissencephaly is a rare central nervous system malformation which includes a group of diseases that are characterized by a bumpy (or pebbled) appearance of the cerebral cortex, associated with a thickened cortex, reduction in normal sulcation, ventriculomegaly and reduced, abnormal white matter, as well as brainstem and cerebellum hypoplasia and corpus callosum agenesis. Patients generally present variable degrees of developmental delay, hypotonia and ocular abnomalities, however muscular and ocular involvement may be absent.","definition_xrefs":["Orphanet:51577"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lissencephaly spectrum disorders","termid":"MONDO:0018838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"cobblestone lissencephaly","secondary_identifiers":["MEDGEN:96562","SCTID:253149002","UMLS:C0431376","GARD:3277","MESH:D054222","NANDO:1201072"],"synonyms":[{"name":"lissencephaly type 2","type":"exact"}],"termid":"MONDO:0018869","xrefs":{"Monarch":{"xref_id":"0018869"}}}


id: PBO:0000442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase X family","termid":"PBO:0000442"}


id: PATO:0001330
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A flavor quality inhering in a bearer by virtue of the bearer's lacking flavour.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavor","termid":"PATO:0000043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flavourless","termid":"PATO:0001330"}


id: FYPO:0003956
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A translation phenotype in which a tRNA pairs with mRNA at the stop codon UAA, and incorporates an amino acid residue into the nascent polypeptide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal translation","termid":"FYPO:0001797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"UAA suppression","synonyms":[{"name":"UAA suppressor","type":"exact"},{"name":"ochre suppression","type":"exact"},{"name":"ochre suppressor","type":"exact"}],"termid":"FYPO:0003956"}


id: MONDO:0014322
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary ovarian failure in which the cause of the disease is a mutation in the HFM1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited primary ovarian failure","termid":"MONDO:0019852"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"premature ovarian failure 9","secondary_identifiers":["OMIM:615724","UMLS:C3810376","MEDGEN:816706","DOID:0080866"],"synonyms":[{"name":"HFM1 primary ovarian failure","type":"exact"},{"name":"Pof9","type":"related"},{"name":"premature ovarian failure 9","type":"exact"},{"name":"premature ovarian failure type 9","type":"exact"},{"name":"primary ovarian failure caused by mutation in HFM1","type":"exact"}],"termid":"MONDO:0014322","xrefs":{"Monarch":{"xref_id":"0014322"}}}


id: PBO:0018206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinone biosynthesis protein Coq11","termid":"PBO:0018206"}


id: PATO:0001433
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a single process which describes the growth of an organism, structure, or group of organisms.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"process quality","termid":"PATO:0001236"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth quality of occurrent","secondary_identifiers":["PATO:0001489"],"synonyms":[{"name":"growth quality of a process","type":"related"},{"name":"growth timing quality","type":"related"}],"termid":"PATO:0001433"}


id: PBO:0048087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin light chain pseudogene 8","termid":"PBO:0048087"}


id: PATO:0000614
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A pattern where all the repeated elements are oriented in the same direction.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regular spatial pattern","termid":"PATO:0000440"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oriented","termid":"PATO:0000614"}


id: MONDO:0012211
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The CDG (Congenital Disorders of Glycosylation) syndromes are a group of autosomal recessive disorders affecting glycoprotein synthesis. CDG syndrome type If is characterized by psychomotor delay, seizures, failure to thrive, and cutaneous and ocular anomalies.","definition_xrefs":["Orphanet:79323"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"skin disorder","termid":"MONDO:0005093"},{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type I","termid":"MONDO:0005500"},{"relation_name":"is_a","term_name":"disorder of multiple glycosylation","termid":"MONDO:0017749"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"MPDU1-congenital disorder of glycosylation","secondary_identifiers":["GARD:9832","MEDGEN:322968","NCIT:C126872","DOID:0080558","OMIM:609180","SCTID:724096007","UMLS:C1836669","MESH:C535744"],"synonyms":[{"name":"CDG 1F","type":"related"},{"name":"CDG If","type":"related"},{"name":"CDG syndrome type If","type":"exact"},{"name":"CDG-If","type":"exact"},{"name":"CDG1F","type":"exact"},{"name":"CDGIf","type":"exact"},{"name":"MPDU1-CDG","type":"exact"},{"name":"MPDU1-CDG (CDG-If)","type":"related"},{"name":"carbohydrate deficient glycoprotein syndrome type If","type":"exact"},{"name":"carbohydrate-deficient glycoprotein syndrome type 1F","type":"related"},{"name":"congenital disorder of glycosylation type 1f","type":"exact"},{"name":"congenital disorder of glycosylation type If","type":"exact"},{"name":"congenital disorder of glycosylation, type If","type":"related"}],"termid":"MONDO:0012211","xrefs":{"Monarch":{"xref_id":"0012211"}}}


id: FYPO:0006713
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of malonyl-CoA measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular malonyl-CoA level","synonyms":[{"name":"increased cellular malonyl-CoA level during mitotic cell cycle","type":"related"},{"name":"increased cellular malonyl-CoA level during vegetative growth","type":"exact"},{"name":"increased malonyl-CoA accumulation","type":"related"}],"termid":"FYPO:0006713"}


id: SO:0001195
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An oligo composed of (R)-GNA residues.","definition_xrefs":["RSC:cb"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"R_GNA","termid":"SO:0001194"},{"relation_name":"is_a","term_name":"GNA_oligo","termid":"SO:0001193"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"R_GNA_oligo","synonyms":[{"name":"(R)-glycerol nucleic acid","type":"exact"},{"name":"(R)-glycol nucleic acid","type":"exact"},{"name":"R GNA oligo","type":"exact"}],"termid":"SO:0001195"}


id: MONDO:0018259
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"melanocytic nevus","termid":"MONDO:0005073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"didymosis aplasticosebacea","secondary_identifiers":["UMLS:C4751600","GARD:21591","MEDGEN:1650408","Orphanet:370046"],"synonyms":[{"name":"aplasia cutis congenita-nevus sebaceus syndrome","type":"exact"}],"termid":"MONDO:0018259","xrefs":{"Monarch":{"xref_id":"0018259"}}}


id: GO:0030734
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + 1,4-N1-D-glucooligosaccharide = S-adenosyl-L-homocysteine + oligosaccharide containing 6-methyl-D-glucose units.","definition_xrefs":["EC:2.1.1.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016741"],"is_obsolete":false,"name":"polysaccharide O-methyltransferase activity","secondary_identifiers":["MetaCyc:POLYSACCHARIDE-O-METHYLTRANSFERASE-RXN"],"synonyms":[{"name":"S-adenosyl-L-methionine:1,4-alpha-D-glucan 6-O-methyltransferase activity","type":"related"},{"name":"acylpolysacharide 6-methyltransferase activity","type":"related"},{"name":"polysaccharide methyltransferase activity","type":"related"}],"termid":"GO:0030734"}


id: MONDO:0006863
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infiltrating malignant soft tissue neoplasm characterized by the presence of immature undifferentiated cells and abundant myxoid stroma formation.","definition_xrefs":["NCIT:C3255"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete connective tissue cancer (obsolete MONDO:0002176)","termid":"MONDO:0002176"},{"relation_name":"is_a","term_name":"soft tissue sarcoma","termid":"MONDO:0018078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"myxosarcoma","secondary_identifiers":["MEDGEN:6508","UMLS:C0027155","DOID:4136","EFO:1001056","MESH:D009236","ICDO:8840/3"],"synonyms":[{"name":"myxosarcoma","type":"exact"},{"name":"myxosarcoma (morphologic abnormality)","type":"exact"},{"name":"myxosarcoma, malignant","type":"exact"}],"termid":"MONDO:0006863","xrefs":{"Monarch":{"xref_id":"0006863"}}}


id: SO:0002040
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding a vaultRNA.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nc_primary_transcript","termid":"SO:0000483"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vaultRNA_primary_transcript","synonyms":[{"name":"vaultRNA primary transcript","type":"exact"}],"termid":"SO:0002040"}


id: FYPO:0003068
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at replication forks is decreased during a cellular response to hydroxyurea.","definition_xrefs":["PMID:22682245","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to chromatin during vegetative growth","termid":"FYPO:0002909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to chromatin at replication forks during cellular response to hydroxyurea","synonyms":[{"name":"decreased protein localisation to chromatin at replication forks during cellular response to hydroxyurea","type":"exact"},{"name":"decreased protein localization to chromatin at replication forks during cellular response to HU","type":"exact"},{"name":"decreased protein localization to chromatin at replication forks during cellular response to hydroxyurea during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to chromatin at replication forks during cellular response to hydroxyurea during vegetative growth","type":"exact"},{"name":"reduced protein localization to chromatin at replication forks during cellular response to hydroxyurea","type":"exact"}],"termid":"FYPO:0003068"}


id: PBO:0064944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRC2 and DDX5 associated lncRNA","termid":"PBO:0064944"}


id: MONDO:0020831
data:
  {"annotated_genes":["SJAG_02618"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87252],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030077"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02618":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267","MONDO:0006025"],"is_obsolete":false,"name":"congenital vertebral-cardiac-renal anomalies syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1814457","Orphanet:521438","UMLS:C5680183","GARD:17961","OMIMPS:617660"],"synonyms":[{"name":"VCRL","type":"exact"},{"name":"vertebral, cardiac, renal, and limb defects syndrome","type":"exact"}],"termid":"MONDO:0020831","terms_by_termid":{"MONDO:0030077":null},"xrefs":{"Monarch":{"xref_id":"0020831"}}}


id: GO:0004813
data:
  {"annotated_genes":["SJAG_01797"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77558],"is_not":false,"summary":null,"term":"GO:0004813"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala).","definition_xrefs":["EC:6.1.1.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01797":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0140101","GO:0003674","GO:0140098","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"alanine-tRNA ligase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["RHEA:12540","Reactome:R-HSA-380177","Reactome:R-HSA-379864","MetaCyc:ALANINE--TRNA-LIGASE-RXN"],"synonyms":[{"name":"Ala-tRNA synthetase activity","type":"related"},{"name":"AlaRS","type":"related"},{"name":"L-alanine:tRNAAla ligase (AMP-forming)","type":"related"},{"name":"alanine tRNA synthetase activity","type":"related"},{"name":"alanine transfer RNA synthetase activity","type":"related"},{"name":"alanine translase activity","type":"related"},{"name":"alanine-transfer RNA ligase activity","type":"related"},{"name":"alanyl-tRNA synthetase activity","type":"exact"},{"name":"alanyl-transfer RNA synthetase activity","type":"related"},{"name":"alanyl-transfer ribonucleate synthase activity","type":"related"},{"name":"alanyl-transfer ribonucleate synthetase activity","type":"related"},{"name":"alanyl-transfer ribonucleic acid synthetase activity","type":"related"}],"termid":"GO:0004813","terms_by_termid":{"GO:0004813":null}}


id: GO:0061653
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Isoenergetic transfer of ISG15 from one protein to another via the reaction X-ISG15 + Y = Y-ISG15 + X, where both the X-ISG15 and Y-ISG15 linkages are thioester bonds between the C-terminal amino acid of ISG15 and a sulfhydryl side group of a cysteine residue.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ISG15 transferase activity","termid":"GO:0042296"},{"relation_name":"is_a","term_name":"ubiquitin-like protein conjugating enzyme activity","termid":"GO:0061650"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0019787","GO:0016746","GO:0003824","GO:0016740","GO:0140096"],"is_obsolete":false,"name":"ISG15 conjugating enzyme activity","synonyms":[{"name":"E2","type":"broad"}],"termid":"GO:0061653"}


id: PR:Q9C1W7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mim1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9C1W7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial import protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC713.08","synonyms":[{"name":"Spom972h-mim1","type":"exact"}],"termid":"PR:Q9C1W7"}


id: PR:000027549
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H2A.2 unmodified form in Schizosaccharomyces pombe.","definition_xrefs":["PMID:19965387","PMID:15226425","PomBase:MAH","PMID:21516229"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2A-beta (Schizosaccharomyces pombe 972h-)","termid":"PR:P04910"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A-beta unmodified form (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC19G12.06c","synonyms":[{"name":"Spom-HTA2/UnMod","type":"exact"}],"termid":"PR:000027549"}


id: MOD:00146
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts four L-cysteine residues and a two-iron two-sulfur cluster to tetrakis-L-cysteinyl diiron disulfide.","definition_xrefs":["PubMed:7763242","PubMed:8688437","PubMed:2123937","PubMed:6801028","RESID:AA0137"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron-sulfur cluster containing modification","termid":"MOD:00739"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-cysteine residue","termid":"MOD:02067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"tetrakis-L-cysteinyl diiron disulfide","synonyms":[{"name":"METAL Iron-sulfur (2Fe-2S)","type":"exact"},{"name":"METAL Iron-sulfur (2Fe-2S); shared with dimeric partner","type":"exact"},{"name":"tetrakis-L-cysteinyl diiron disulfide","type":"exact"},{"name":"tetrakiscysteinato-1kappa(2)S,2kappa(2)S-di-mu-sulfido-diiron","type":"exact"}],"termid":"MOD:00146"}


id: MONDO:0024189
data:
  {"annotated_genes":["SJAG_00243","SJAG_05008"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87162],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:8000012"},{"annotations":[88070],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030375"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00243":null,"SJAG_05008":null},"genotype_count":0,"is_obsolete":false,"name":"neurologic, endocrine, and pancreatic disease, multisystem, infantile-onset","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIMPS:616263"],"termid":"MONDO:0024189","terms_by_termid":{"MONDO:0030375":null,"MONDO:8000012":null},"xrefs":{"Monarch":{"xref_id":"0024189"}}}


id: MONDO:0600014
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare form of interstitial and vascular lung disease that presents as severe pulmonary hypertension and refractory hypoxemia early in life that is characterized by a lack of misalignment of the pulmonary veins.","definition_xrefs":["PMID:33766794"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital pulmonary veins anomaly","termid":"MONDO:0020295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"alveolar capillary dysplasia without misalignment of pulmonary veins","synonyms":[{"name":"ACD without misalignment","type":"exact"}],"termid":"MONDO:0600014","xrefs":{"Monarch":{"xref_id":"0600014"}}}


id: MONDO:0004900
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"vestibular disorder","termid":"MONDO:0002643"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peripheral vertigo","secondary_identifiers":["UMLS:C0155501","DOID:9847","ICD9:386.1","MEDGEN:102334","ICD9:386.10","SCTID:50438001","ICD9:386.19"],"termid":"MONDO:0004900","xrefs":{"Monarch":{"xref_id":"0004900"}}}


id: PBO:0049069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 85","termid":"PBO:0049069"}


id: PBO:0071556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 21","termid":"PBO:0071556"}


id: GO:0009777
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any metabolic process in which photosynthetic organisms use light energy to convert ADP to ATP without the concomitant reduction of dioxygen (O2) to water that occurs in phosphorylation.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorylation","termid":"GO:0016310"},{"relation_name":"part_of","term_name":"photosynthesis, light reaction","termid":"GO:0019684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"photosynthetic phosphorylation","synonyms":[{"name":"photosynthetic ATP synthesis","type":"narrow"}],"termid":"GO:0009777"}


id: PBO:0043944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crystallin alpha A","termid":"PBO:0043944"}


id: MONDO:0000497
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of uterine musculature associated with pus in the uterine cavity.","direct_ancestors":[{"relation_name":"is_a","term_name":"uterine disorder","termid":"MONDO:0002654"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyometritis","secondary_identifiers":["NCIT:C121207","SCTID:88981003","MEDGEN:18784","MESH:D055112","UMLS:C0034215","DOID:0050862"],"synonyms":[{"name":"inflammation of myometrium","type":"exact"},{"name":"myometrium inflammation","type":"exact"},{"name":"pyometra","type":"exact"}],"termid":"MONDO:0000497","xrefs":{"Monarch":{"xref_id":"0000497"}}}


id: MONDO:0020620
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete blood group, ss (obsolete MONDO:0020620)","secondary_identifiers":["OMIM:111740"],"synonyms":[{"name":"BLOOD GROUP, Ss","type":"related"},{"name":"Ss","type":"related"},{"name":"Ss Blood Group","type":"related"},{"name":"blood group, Ss","type":"exact"}],"termid":"MONDO:0020620","xrefs":{"Monarch":{"xref_id":"0020620"}}}


id: PBO:0076845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"telomerase reverse transcriptase","termid":"PBO:0076845"}


id: GO:0097036
data:
  {"annotated_genes":["SJAG_00261","SJAG_00870"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73628,102993],"is_not":false,"summary":null,"term":"GO:0097036"}]},"cv_name":"biological_process","definition":"Any process that modulates the proportions or spatial arrangement of sterols in the plasma membrane.","definition_xrefs":["PMID:20823909","PMID:18441123","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane organization","termid":"GO:0007009"},{"relation_name":"is_a","term_name":"regulation of membrane lipid distribution","termid":"GO:0097035"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00261":null,"SJAG_00870":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"regulation of plasma membrane sterol distribution","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0097036","terms_by_termid":{"GO:0097036":null}}


id: PBO:0076886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 37","termid":"PBO:0076886"}


id: PBO:0046956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 78 member A","termid":"PBO:0046956"}


id: GO:0090610
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a bundle sheath cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.","definition_xrefs":["GOC:tb","PMID:24517883"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate specification","termid":"GO:0001708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bundle sheath cell fate specification","termid":"GO:0090610"}


id: GO:0007628
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The behavior of an adult relating to the progression of that organism along the ground by the process of lifting and setting down each leg.","definition_xrefs":["ISBN:0198606907","GOC:jid","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adult locomotory behavior","termid":"GO:0008344"},{"relation_name":"is_a","term_name":"walking behavior","termid":"GO:0090659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adult walking behavior","synonyms":[{"name":"adult walking behaviour","type":"exact"}],"termid":"GO:0007628"}


id: PBO:0065268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRR29 antisense RNA 1","termid":"PBO:0065268"}


id: MONDO:0019323
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pemphigus erythematosus is a rare superficial pemphigus disease characterized clinically by well-demarcated, localized, erythematous, scaly, hyperkeratotic, crusted plaques, with frequent butterfly distribution over the malar area of the face (but also commonly involving trunk and scalp, and less frequently the extremities, with a photoexposed distribution). Histologically, granular deposits along the dermal-epidermal junction, in addition to intercellular deposition in the upper epidermis, are observed.","definition_xrefs":["Orphanet:79480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pemphigus","termid":"MONDO:0006594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005046"],"is_obsolete":false,"name":"pemphigus erythematosus","secondary_identifiers":["SCTID:36739006","icd11.foundation:399813106","EFO:0008603","GARD:19022","ICD10CM:L10.4","UMLS:C0263312","NANDO:1200233","MEDGEN:537812","MedDRA:10058917"],"synonyms":[{"name":"Senear-Usher syndrome","type":"exact"},{"name":"seborrheic pemphigus","type":"exact"}],"termid":"MONDO:0019323","xrefs":{"Monarch":{"xref_id":"0019323"}}}


id: MONDO:0001858
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Idiopathic painful nonsuppurative swellings of one or more costal cartilages, especially of the second rib. The anterior chest pain may mimic that of coronary artery disease.","definition_xrefs":["MESH:D013991"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"arthropathy","termid":"MONDO:0006816"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tietze syndrome","secondary_identifiers":["MEDGEN:52753","SCTID:30128009","NCIT:C168333","ICD9:733.6","DOID:14021","ICD10CM:M94.0","UMLS:C0040213"],"synonyms":[{"name":"Chondropathia tuberosa","type":"related"},{"name":"Costalchondritis","type":"exact"},{"name":"Costochondritis","type":"exact"},{"name":"Tietze syndrome","type":"exact"},{"name":"Tietze's disease","type":"exact"},{"name":"Tietze's syndrome","type":"exact"},{"name":"costochondral joint syndromic disease","type":"exact"},{"name":"costochondral junction syndrome","type":"exact"},{"name":"slipping rib syndrome","type":"exact"},{"name":"syndromic disease of costochondral joint","type":"exact"}],"termid":"MONDO:0001858","xrefs":{"Monarch":{"xref_id":"0001858"}}}


id: PBO:0057932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3659","termid":"PBO:0057932"}


id: PBO:0049371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIIA pseudogene 1","termid":"PBO:0049371"}


id: PBO:0068566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 17, pseudogene","termid":"PBO:0068566"}


id: PBO:0068061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 366","termid":"PBO:0068061"}


id: MONDO:0024304
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The most common form of ichthyosis. It is an autosomal dominant inherited or acquired disorder characterized by scaling and desquamation of the skin.","definition_xrefs":["NCIT:C84778"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"ichthyosis","termid":"MONDO:0019269"},{"relation_name":"is_a","term_name":"inherited ichthyosis","termid":"MONDO:0015947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"ichthyosis vulgaris","secondary_identifiers":["GARD:6752","MESH:D016112","UMLS:C0079584","MEDGEN:38217","icd11.foundation:841161884"],"synonyms":[{"name":"common ichthyosis","type":"related"},{"name":"fish scale disease","type":"related"},{"name":"ichthyosis vulgaris","type":"exact"}],"termid":"MONDO:0024304","xrefs":{"Monarch":{"xref_id":"0024304"}}}


id: MONDO:0016937
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndrome caused by partial chromosomal duplication","termid":"MONDO:0000762"},{"relation_name":"is_a","term_name":"chromosome 19 disorder","termid":"MONDO:0700024"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial duplication of chromosome 19","secondary_identifiers":["Orphanet:262687","GARD:20857","SCTID:726358004","UMLS:C4518507","MEDGEN:1379548"],"synonyms":[{"name":"partial duplication of chromosome type 19","type":"exact"},{"name":"partial trisomy of chromosome 19","type":"exact"}],"termid":"MONDO:0016937","xrefs":{"Monarch":{"xref_id":"0016937"}}}


id: PBO:0062169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily K member 12 pseudogene","termid":"PBO:0062169"}


id: GO:0017081
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and modulates the activity of a chloride channel.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ion channel regulator activity","termid":"GO:0099106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0098772","GO:0003674"],"is_obsolete":false,"name":"chloride channel regulator activity","secondary_identifiers":["Reactome:R-HSA-383190"],"termid":"GO:0017081"}


id: GO:0034221
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of cell wall chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues, found in the walls of fungal cells.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete fungal-type cell wall chitin biosynthetic process (obsolete GO:0034221)","synonyms":[{"name":"fungal-type cell wall chitin anabolism","type":"exact"},{"name":"fungal-type cell wall chitin biosynthesis","type":"exact"},{"name":"fungal-type cell wall chitin formation","type":"exact"},{"name":"fungal-type cell wall chitin synthesis","type":"exact"}],"termid":"GO:0034221"}


id: GO:0016837
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the cleavage of a carbon-oxygen bond by the elimination of an alcohol from a polysaccharide.","definition_xrefs":["EC:4.2.2.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity","termid":"GO:0016835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}


id: PBO:0063051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein associated with LIN7 2, MAGUK p55 family member","termid":"PBO:0063051"}


id: PBO:0084926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA 3' end processing factor; essential component of cleavage and polyadenylation factor IA (CF IA), involved in pre-mRNA 3' end processing and in transcription termination; binds C-terminal domain of largest subunit of RNA pol II (Rpo21p); required for gene looping; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0084926"}


id: GO:0031144
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which the proteasome is transported to, or maintained in, a specific location.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"proteasome localization","synonyms":[{"name":"establishment and maintenance of proteasome localization","type":"exact"},{"name":"proteasome localisation","type":"exact"}],"termid":"GO:0031144"}


id: MONDO:1050000
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Folliculitis of the beard and/or mustache areas caused by a bacterial infection, usually caused by Staphylococcus aureus.","direct_ancestors":[{"relation_name":"is_a","term_name":"folliculitis","termid":"MONDO:0006552"},{"relation_name":"is_a","term_name":"skin infection","termid":"MONDO:0021201"},{"relation_name":"is_a","term_name":"skin disease caused by bacterial infection","termid":"MONDO:0024295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"sycosis barbae","secondary_identifiers":["MedDRA:10042731","UMLS:C0275798","MEDGEN:546837","SCTID:156410002"],"synonyms":[{"name":"bacterial folliculitis","type":"related"}],"termid":"MONDO:1050000","xrefs":{"Monarch":{"xref_id":"1050000"}}}


id: MOD:00048
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tyrosine residue to O4'-phospho-L-tyrosine.","definition_xrefs":["DeltaMass:0","PubMed:10226369","PubMed:1725475","Unimod:21#Y","RESID:AA0039","OMSSA:8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"residues isobaric at 243.02-243.03 Da","termid":"MOD:00774"},{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"O-phosphorylated residue","termid":"MOD:01455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00696"}],"interesting_parent_ids":["MOD:00696"],"is_obsolete":false,"name":"O4'-phospho-L-tyrosine","synonyms":[{"name":"(2S)-2-amino-3-(4-phosphonooxyphenyl)propanoic acid","type":"exact"},{"name":"2-amino-3-(4-hydroxyphenyl)propanoic acid 4'-phosphate","type":"exact"},{"name":"2-azanyl-3-(4-phosphonooxyphenyl)propanoic acid","type":"exact"},{"name":"MOD_RES Phosphotyrosine","type":"exact"},{"name":"O4'-phospho-L-tyrosine","type":"exact"},{"name":"O4'-phosphorylated L-tyrosine","type":"exact"},{"name":"O4-phosphotyrosine","type":"exact"},{"name":"OPTyr","type":"exact"},{"name":"Phospho","type":"related"},{"name":"Phospho Tyrosinyl","type":"exact"},{"name":"Phosphorylation","type":"related"},{"name":"phosphorylationy","type":"exact"},{"name":"tyrosine phosphate","type":"exact"}],"termid":"MOD:00048"}


id: PR:Q9P7L7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC21C3.06 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7L7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C21C3.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21C3.06","synonyms":[{"name":"Spom972h-SPBC21C3.06","type":"exact"}],"termid":"PR:Q9P7L7"}


id: GO:0050277
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + sedoheptulose = ADP + 2 H+ + sedoheptulose 7-phosphate.","definition_xrefs":["RHEA:23844","EC:2.7.1.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016740","GO:0016301","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"sedoheptulokinase activity","secondary_identifiers":["Reactome:R-HSA-8959719","KEGG_REACTION:R01844","MetaCyc:SEDOHEPTULOKINASE-RXN"],"synonyms":[{"name":"ATP:sedoheptulose 7-phosphotransferase activity","type":"related"},{"name":"heptulokinase activity","type":"related"},{"name":"sedoheptulokinase (phosphorylating)","type":"related"}],"termid":"GO:0050277"}


id: PBO:0034815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"disease association, microcephalic primordial dwarfism","termid":"PBO:0034815"}


id: PBO:0040852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BLOC1S5-TXNDC5 readthrough (NMD candidate)","termid":"PBO:0040852"}


id: PBO:0076579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 3 pseudogene 7","termid":"PBO:0076579"}


id: MONDO:0005883
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Virus infection of the Gasserian ganglion and its nerve branches characterized by pain and vesicular eruptions with much swelling. Ocular involvement is usually heralded by a vesicle on the tip of the nose. This area is innervated by the nasociliary nerve.","definition_xrefs":["MESH:D006563"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trigeminal nerve disorder","termid":"MONDO:0003543"},{"relation_name":"is_a","term_name":"herpes zoster","termid":"MONDO:0005609"},{"relation_name":"is_a","term_name":"infectious disorder of the nervous system","termid":"MONDO:0020010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"ophthalmic herpes zoster","secondary_identifiers":["UMLS:C0019364","ICD9:053.29","EFO:0007403","MEDGEN:9236","SCTID:87513003"],"synonyms":[{"name":"HZO","type":"related"},{"name":"Herpes zoster ophthalmicus (HZO)","type":"related"},{"name":"herpes zoster ophthalmicus","type":"exact"}],"termid":"MONDO:0005883","xrefs":{"Monarch":{"xref_id":"0005883"}}}


id: PBO:0065858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB15, member RAS oncogene family","termid":"PBO:0065858"}


id: SO:0000194
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A dispersed repeat family with many copies, each from 1 to 6 kb long. New elements are generated by retroposition of a transcribed copy. Typically the LINE contains 2 ORF's one of which is reverse transcriptase, and 3'and 5' direct repeats.","direct_ancestors":[{"relation_name":"is_a","term_name":"non_LTR_retrotransposon","termid":"SO:0000189"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LINE_element","synonyms":[{"name":"LINE","type":"exact"},{"name":"LINE element","type":"exact"},{"name":"Long interspersed element","type":"exact"},{"name":"Long interspersed nuclear element","type":"exact"}],"termid":"SO:0000194"}


id: MONDO:0009591
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Metachromatic leukodystrophy is an inherited condition characterized by the accumulation of fats called sulfatides in cells, especially cells of the nervous system. This accumulation results in progressive destruction of white matter of the brain, which consists of nerve fibers covered by myelin.Affected individuals experience progressive deterioration of intellectual functions and motor skills, such as the ability to walk. They also develop loss of sensation in the extremities, incontinence, seizures, paralysis, inability to speak, blindness, and hearing loss. Eventually they lose awareness of their surroundings and become unresponsive. This condition is inherited in an autosomal recessive pattern and is caused by mutations in the ARSA and PSAP genes.","definition_xrefs":["GARD:0003230"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metachromatic leukodystrophy","termid":"MONDO:0018868"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0005559","MONDO:0005244","MONDO:0002525","MONDO:0005066","MONDO:0002561"],"is_obsolete":false,"name":"metachromatic leukodystrophy, juvenile form","secondary_identifiers":["OMIM:250100","GARD:21329","Orphanet:309263","MEDGEN:155528","UMLS:C0751276","NANDO:1200080","SCTID:44359008","NANDO:2201203"],"synonyms":[{"name":"ARSA deficiency","type":"related"},{"name":"MLD","type":"related"},{"name":"MLD, juvenile form","type":"exact"},{"name":"Mld","type":"related"},{"name":"arylsulfatase A deficiency","type":"related"},{"name":"arylsulfatase A deficiency, juvenile form","type":"exact"},{"name":"cerebral sclerosis diffuse metachromatic form","type":"related"},{"name":"cerebral sclerosis, diffuse, metachromatic form","type":"related"},{"name":"cerebroside sulfatase deficiency","type":"related"},{"name":"leukodystrophy metachromatic","type":"related"},{"name":"metachromatic leukodystrophy","type":"related"},{"name":"metachromatic leukodystrophy, adult","type":"related"},{"name":"metachromatic leukodystrophy, juvenile","type":"related"},{"name":"metachromatic leukodystrophy, juvenile form","type":"exact"},{"name":"metachromatic leukodystrophy, late infantile","type":"related"},{"name":"metachromatic leukoencephalopathy","type":"related"},{"name":"pseudoarylsulfatase A deficiency","type":"related"},{"name":"sulfatide lipidosis","type":"related"}],"termid":"MONDO:0009591","xrefs":{"Monarch":{"xref_id":"0009591"}}}


id: MONDO:0018940
data:
  {"annotated_genes":["SJAG_01872","SJAG_03056","SJAG_00924","SJAG_04728","SJAG_04821","SJAG_00826"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87711],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012518"},{"annotations":[87909],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013883"},{"annotations":[87146],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014543"},{"annotations":[87143],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014542"},{"annotations":[86986],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014590"},{"annotations":[87776],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012157"},{"annotations":[88018],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032596"}]},"cv_name":"mondo","definition":"Congenital myasthenic syndrome (CMS) is a group of genetic disorders of impaired neuromuscular transmission at the motor endplate characterized by fatigable muscle weakness.","definition_xrefs":["Orphanet:590"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete myasthenic syndrome with eye involvement (obsolete MONDO:0020260)","termid":"MONDO:0020260"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"neuromuscular junction disease","termid":"MONDO:0020124"},{"relation_name":"is_a","term_name":"hereditary neuromuscular disease","termid":"MONDO:0100546"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00826":null,"SJAG_00924":null,"SJAG_01872":null,"SJAG_03056":null,"SJAG_04728":null,"SJAG_04821":null},"genotype_count":0,"is_obsolete":false,"name":"congenital myasthenic syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:3635","ICD9:V17.89","NCIT:C84647","MESH:D020294","UMLS:C0751882","icd11.foundation:1515367530","GARD:11902","MEDGEN:155650","SCTID:230672006","NANDO:1200021","ICD9:358.00","NORD:1893","OMIMPS:601462"],"synonyms":[{"name":"CMS","type":"exact"},{"name":"Congenital Myasthenic Syndromes","type":"exact"},{"name":"congenital MG","type":"related"},{"name":"congenital myasthenia","type":"related"},{"name":"erb-Goldflam syndrome","type":"related"},{"name":"familial limb-girdle myasthenia","type":"related"},{"name":"myasthenia gravis congenital","type":"related"},{"name":"myasthenia gravis pseudoparalytica","type":"related"},{"name":"myasthenic syndrome, congenital","type":"exact"}],"termid":"MONDO:0018940","terms_by_termid":{"MONDO:0012157":null,"MONDO:0012518":null,"MONDO:0013883":null,"MONDO:0014542":null,"MONDO:0014543":null,"MONDO:0014590":null,"MONDO:0032596":null},"xrefs":{"Monarch":{"xref_id":"0018940"}}}


id: MOD:00104
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to L-proline amide.","definition_xrefs":["PubMed:4982117","RESID:AA0095","PubMed:5760861"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C1-amidated residue","termid":"MOD:00883"},{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-proline amide","synonyms":[{"name":"(2S)-pyrrolidine-2-carboxamide","type":"exact"},{"name":"L-proline amide","type":"exact"},{"name":"MOD_RES Proline amide","type":"exact"},{"name":"ProN","type":"exact"},{"name":"amidated L-proline","type":"exact"},{"name":"prolinamide","type":"exact"}],"termid":"MOD:00104"}


id: MONDO:0030489
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"epidermolysis bullosa simplex","termid":"MONDO:0017610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"epidermolysis bullosa simplex 2A, generalized severe","secondary_identifiers":["OMIM:619555"],"synonyms":[{"name":"EBS2A","type":"exact"}],"termid":"MONDO:0030489","xrefs":{"Monarch":{"xref_id":"0030489"}}}


id: PBO:0046966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAM83C antisense RNA 1","termid":"PBO:0046966"}


id: PBO:0004509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YjgF family protein Mmf1","termid":"PBO:0004509"}


id: GO:0015771
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of trehalose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Trehalose is a disaccharide that consists of two molecules of glucose and is isomeric with sucrose.","definition_xrefs":["PMID:17606922","PMID:20035867","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disaccharide transport","termid":"GO:0015766"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"trehalose transport","termid":"GO:0015771"}


id: PBO:0034148
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-visits_flowers_of","termid":"PBO:0034148"}


id: PBO:0017757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WIP family cytoskeletal protein Bbc1 (predicted)","termid":"PBO:0017757"}


id: GO:0008728
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + GTP = AMP + guanosine 3'-diphosphate 5'-triphosphate.","definition_xrefs":["EC:2.7.6.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diphosphotransferase activity","termid":"GO:0016778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"GTP diphosphokinase activity","secondary_identifiers":["MetaCyc:GTPPYPHOSKIN-RXN","RHEA:22088"],"synonyms":[{"name":"(p)ppGpp synthetase I","type":"related"},{"name":"(p)ppGpp synthetase II","type":"related"},{"name":"ATP-GTP 3'-diphosphotransferase activity","type":"related"},{"name":"ATP:GTP 3'-diphosphotransferase activity","type":"related"},{"name":"GPSI","type":"related"},{"name":"GPSII","type":"related"},{"name":"GTP pyrophosphokinase activity","type":"exact"},{"name":"guanosine 3',5'-polyphosphate synthase activity","type":"related"},{"name":"guanosine 5',3'-polyphosphate synthetase activity","type":"related"},{"name":"guanosine pentaphosphate synthetase activity","type":"related"},{"name":"ppGpp synthetase I activity","type":"related"},{"name":"stringent factor activity","type":"related"}],"termid":"GO:0008728"}


id: FYPO:0002360
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transcription regulation phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at centromeric regions is normal (i.e. indistinguishable from wild type). Chromatin silencing is the observed effect of processes that repress transcription in a region of the genome that is normally assembled into heterochromatin or CENP-A-containing chromatin (the latter is found at the centromere central core).","definition_xrefs":["PomBase:vw","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal chromatin silencing","termid":"FYPO:0002335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal chromatin silencing at centromere","synonyms":[{"name":"normal chromatin silencing at centromere during mitotic cell cycle","type":"related"},{"name":"normal chromatin silencing at centromere during vegetative growth","type":"exact"}],"termid":"FYPO:0002360"}


id: PBO:0090514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi calcium and manganese antiporter Gdt1","termid":"PBO:0090514"}


id: FYPO:0004126
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 4 of histone H3 does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished histone H3-K4 methylation during vegetative growth","termid":"FYPO:0002917"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0002494","FYPO:0002274"],"is_obsolete":false,"name":"abolished histone H3-K4 trimethylation during vegetative growth","synonyms":[{"name":"abolished histone H3 K4 trimethylation during vegetative growth","type":"exact"},{"name":"abolished histone H3-K4 trimethylation during mitotic cell cycle","type":"related"},{"name":"abolished histone H3K4me3 during vegetative growth","type":"exact"},{"name":"abolished histone lysine H3 K4 trimethylation during vegetative growth","type":"exact"},{"name":"histone H3-K4 trimethylation abolished during vegetative growth","type":"exact"},{"name":"histone H3-K4 trimethylation absent during vegetative growth","type":"exact"}],"termid":"FYPO:0004126"}


id: MONDO:1011339
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Obstetric disorder that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-human animal disease","termid":"MONDO:0005583"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"obstetric disorder, non-human animal","termid":"MONDO:1011339","xrefs":{"Monarch":{"xref_id":"1011339"}}}


id: GO:0048223
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Network composed of hemicelluloses; members of a class of plant cell wall polysaccharide that cannot be extracted from the wall by hot water or chelating agents, but can be extracted by aqueous alkali. Includes xylan, glucuronoxylan, arabinoxylan, arabinogalactan II, glucomannan, xyloglucan and galactomannan.","definition_xrefs":["DOI:10.1016/j.foodchem.2008.11.065","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"primary cell wall","termid":"GO:0009530"},{"relation_name":"part_of","term_name":"secondary cell wall","termid":"GO:0009531"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005618"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005618","GO:0005575"],"is_obsolete":false,"name":"hemicellulose network","termid":"GO:0048223"}


id: MONDO:0003878
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A uveal melanoma that arises from the choroid. It is the most common primary malignant intraocular tumor. It usually affects Caucasians of northern European descent. It usually remains asymptomatic for a long period. When signs and symptoms occur, they include blurred vision, visual field loss, floaters, and ocular pain. Tumor size is the most important factor that relates to prognosis.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uveal melanoma","termid":"MONDO:0006486"},{"relation_name":"is_a","term_name":"choroid cancer","termid":"MONDO:0006700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0004992"],"is_obsolete":false,"name":"malignant choroid melanoma","secondary_identifiers":["MEDGEN:138064","DOID:6438","MONDO:0021436","SCTID:255021005","UMLS:C0346388","NCIT:C4561"],"synonyms":[{"name":"choroid malignant melanoma","type":"exact"},{"name":"choroid melanoma","type":"exact"},{"name":"choroidal melanoma","type":"exact"},{"name":"malignant melanoma of choroid","type":"exact"},{"name":"malignant melanoma of the choroid","type":"exact"},{"name":"melanoma (disease) of optic choroid","type":"exact"},{"name":"melanoma of choroid","type":"exact"},{"name":"melanoma of the choroid","type":"exact"},{"name":"optic choroid melanoma","type":"exact"},{"name":"optic choroid melanoma (disease)","type":"exact"}],"termid":"MONDO:0003878","xrefs":{"Monarch":{"xref_id":"0003878"}}}


id: MONDO:0003918
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A WHO grade I meningioma characterized by the presence of small and medium sized vessels that predominate over the meningioma cells.","definition_xrefs":["NCIT:C4332"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meningioma","termid":"MONDO:0016642"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angiomatous meningioma","secondary_identifiers":["UMLS:C0334608","MEDGEN:87274","DOID:6548","ICDO:9534/0"],"synonyms":[{"name":"angiomatous meningioma (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0003918","xrefs":{"Monarch":{"xref_id":"0003918"}}}


id: GO:0014067
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the phosphatidylinositol 3-kinase cascade.","definition_xrefs":["GOC:ef"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of phosphatidylinositol 3-kinase signaling (obsolete GO:0014067)","synonyms":[{"name":"down regulation of phosphatidylinositol 3-kinase cascade","type":"exact"},{"name":"down-regulation of phosphatidylinositol 3-kinase cascade","type":"exact"},{"name":"downregulation of phosphatidylinositol 3-kinase cascade","type":"exact"},{"name":"inhibition of phosphatidylinositol 3-kinase cascade","type":"narrow"},{"name":"negative regulation of PI 3-kinase cascade","type":"exact"},{"name":"negative regulation of PI3K cascade","type":"exact"},{"name":"negative regulation of phosphatidylinositol 3-kinase cascade","type":"related"},{"name":"negative regulation of phosphoinositide 3-kinase cascade","type":"exact"}],"termid":"GO:0014067"}


id: GO:0005826
data:
  {"annotated_genes":["SJAG_05285","SJAG_02266","SJAG_01787","SJAG_00938","SJAG_03025","SJAG_01277","SJAG_02737","SJAG_04621","SJAG_00229","SJAG_03145","SJAG_03379","SJAG_04077","SJAG_00279","SJAG_01665","SJAG_02431","SJAG_01114","SJAG_03681","SJAG_02278","SJAG_04887","SJAG_03704","SJAG_03887","SJAG_03374","SJAG_03596","SJAG_03703","SJAG_03088","SJAG_03631","SJAG_04498","SJAG_04509","SJAG_00228","SJAG_02320","SJAG_02392","SJAG_03625","SJAG_00268","SJAG_01889","SJAG_04375","SJAG_00663","SJAG_02831","SJAG_00750","SJAG_03564","SJAG_00845","SJAG_04703","SJAG_00677","SJAG_01943","SJAG_03581","SJAG_04597","SJAG_02169","SJAG_01143","SJAG_00185","SJAG_02838","SJAG_04461","SJAG_00082","SJAG_02864","SJAG_00807"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[121009,121010,121011,121012,121013,121137,121256],"is_not":false,"summary":null,"term":"GO:0005826"},{"annotations":[103052,96353,95597,108701,119486,117654,91097,107155,121078,121080,112584,121085,121087,120701,89653,91586,78000,117738,121083,103059,92488,100066,121096,94310,76627],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110085"},{"annotations":[102321,106948,110876,102486,119721],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0120106"},{"annotations":[96180,110877,97625,98976,102720,108009,91758,112625,115194,114136,96718,98105,105488,92535,90039,119739,119722],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0120105"},{"annotations":[118878,109946,101903,58222,99429,102749,81459,99808,58754,105713,110878,118785,79916,94094,108851],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0120104"}]},"cv_name":"cellular_component","definition":"A cytoskeletal structure composed of actin filaments and myosin that forms beneath the plasma membrane of many cells, including animal cells and yeast cells, in a plane perpendicular to the axis of the spindle, i.e. the cell division plane. In animal cells, the contractile ring is located at the cleavage furrow. In budding fungal cells, e.g. mitotic S. cerevisiae cells, the contractile ring forms at the mother-bud neck before mitosis.","definition_xrefs":["GOC:vw","ISBN:0815316194","PMID:28914606","ISBN:0805319409","GOC:sgd_curators","GOC:expert_jrp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"contractile ring","termid":"GO:0070938"},{"relation_name":"part_of","term_name":"cortical actin cytoskeleton","termid":"GO:0030864"},{"relation_name":"part_of","term_name":"cell division site","termid":"GO:0032153"}],"gene_count":53,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00185":null,"SJAG_00228":null,"SJAG_00229":null,"SJAG_00268":null,"SJAG_00279":null,"SJAG_00663":null,"SJAG_00677":null,"SJAG_00750":null,"SJAG_00807":null,"SJAG_00845":null,"SJAG_00938":null,"SJAG_01114":null,"SJAG_01143":null,"SJAG_01277":null,"SJAG_01665":null,"SJAG_01787":null,"SJAG_01889":null,"SJAG_01943":null,"SJAG_02169":null,"SJAG_02266":null,"SJAG_02278":null,"SJAG_02320":null,"SJAG_02392":null,"SJAG_02431":null,"SJAG_02737":null,"SJAG_02831":null,"SJAG_02838":null,"SJAG_02864":null,"SJAG_03025":null,"SJAG_03088":null,"SJAG_03145":null,"SJAG_03374":null,"SJAG_03379":null,"SJAG_03564":null,"SJAG_03581":null,"SJAG_03596":null,"SJAG_03625":null,"SJAG_03631":null,"SJAG_03681":null,"SJAG_03703":null,"SJAG_03704":null,"SJAG_03887":null,"SJAG_04077":null,"SJAG_04375":null,"SJAG_04461":null,"SJAG_04498":null,"SJAG_04509":null,"SJAG_04597":null,"SJAG_04621":null,"SJAG_04703":null,"SJAG_04887":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005938"},{"rel_name":"is_a","termid":"GO:0070938"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015629"}],"interesting_parent_ids":["GO:0005737","GO:0005938","GO:0005575","GO:0070938","GO:0015629"],"is_obsolete":false,"name":"actomyosin contractile ring","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null,"PMID:25866389":null,"PMID:27059155":null,"PMID:27734801":null,"PMID:28655757":null,"PMID:36148799":null},"secondary_identifiers":["GO:0030480"],"synonyms":[{"name":"CAR","type":"exact"},{"name":"actomyosin ring","type":"related"},{"name":"constriction ring","type":"related"},{"name":"contractile actomyosin ring","type":"exact"},{"name":"cytokinetic ring","type":"related"}],"termid":"GO:0005826","terms_by_termid":{"GO:0005826":null,"GO:0110085":null,"GO:0120104":null,"GO:0120105":null,"GO:0120106":null}}


id: GO:0060060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of the retina is generated and organized in a camera-type eye during the post-embryonic life stage.","definition_xrefs":["GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-embryonic animal morphogenesis","termid":"GO:0009886"},{"relation_name":"part_of","term_name":"retina morphogenesis in camera-type eye","termid":"GO:0060042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"post-embryonic retina morphogenesis in camera-type eye","termid":"GO:0060060"}


id: PBO:0028885
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_RNA_splicing","termid":"PBO:0028885"}


id: PBO:0042376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD200R1 pseudogene 1","termid":"PBO:0042376"}


id: GO:0046448
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving tropane alkaloids, compounds containing the 8-methyl-8-azabicyclo(3.2.1)octane ring system.","definition_xrefs":["ISBN:0198506732","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkaloid metabolic process","termid":"GO:0009820"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tropane alkaloid metabolic process","synonyms":[{"name":"tropane alkaloid metabolism","type":"exact"}],"termid":"GO:0046448"}


id: GO:0018249
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of a water group from a protein amino acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein dehydration","synonyms":[{"name":"protein amino acid dehydration","type":"exact"}],"termid":"GO:0018249"}


id: PBO:0044005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"casein alpha s1","termid":"PBO:0044005"}


id: MONDO:0007621
data:
  {"annotated_genes":["SJAG_02571"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88685],"is_not":false,"summary":null,"term":"MONDO:0007621"}]},"cv_name":"mondo","definition":"Floating-Harbor syndrome is a genetic developmental disorder characterized by facial dysmorphism, short stature with delayed bone age, and expressive language delay.","definition_xrefs":["Orphanet:2044"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02571":null},"genotype_count":0,"is_obsolete":false,"name":"Floating-Harbor syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C537062","icd11.foundation:2101730645","GARD:6455","NORD:1151","ICD9:759.89","UMLS:C0729582","MEDGEN:152667","DOID:0111358","NCIT:C175241","OMIM:136140","SCTID:312214005"],"synonyms":[{"name":"FHS","type":"related"},{"name":"FLHS","type":"related"},{"name":"Floating Harbor Syndrome","type":"exact"},{"name":"Pelletier-Leisti syndrome","type":"related"},{"name":"floating-HARBOR syndrome","type":"exact"},{"name":"floating-Harbor syndrome","type":"exact"},{"name":"short stature with delayed bone age, expressive language delay, a triangular face with a prominent nose and deep-set eyes","type":"related"}],"termid":"MONDO:0007621","terms_by_termid":{"MONDO:0007621":null},"xrefs":{"Monarch":{"xref_id":"0007621"}}}


id: GO:0097342
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex whose core components are the receptor-interacting serine/threonine-protein kinases RIPK1 and RIPK3 (also called RIP1 and RIP3). Formation of the ripoptosome can induce an extrinsic apoptotic signaling pathway or a necroptotic signaling pathway. The composition of this protein complex may depend on several factors including nature of the signal, cell type and more.","definition_xrefs":["PMID:22265414","GOC:bhm","PMID:22274400","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005829","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"ripoptosome","synonyms":[{"name":"TNFR1 complex II","type":"narrow"},{"name":"Tnfr1-CII","type":"narrow"},{"name":"necrosome","type":"related"}],"termid":"GO:0097342"}


id: GO:0110076
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of ferroptosis.","definition_xrefs":["GOC:sp","PMID:29290465","PMID:24439385","PMID:25402683"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of programmed cell death","termid":"GO:0043069"},{"relation_name":"is_a","term_name":"regulation of ferroptosis","termid":"GO:0110075"},{"relation_name":"negatively_regulates","term_name":"ferroptosis","termid":"GO:0097707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of ferroptosis","termid":"GO:0110076"}


id: MONDO:0010504
data:
  {"annotated_genes":["SJAG_00771"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87037],"is_not":false,"summary":null,"term":"MONDO:0010504"}]},"cv_name":"mondo","definition":"Any primary immunodeficiency disease in which the cause of the disease is a mutation in the ATP6AP1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn error of immunity","termid":"MONDO:0003778"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency 47","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:300972","MEDGEN:934786","UMLS:C4310819","DOID:0112002"],"synonyms":[{"name":"ATP6AP1 primary immunodeficiency disease","type":"exact"},{"name":"IMD47","type":"exact"},{"name":"immunodeficiency 47","type":"exact"},{"name":"immunodeficiency 47, X-linked recessive","type":"exact"},{"name":"immunodeficiency 47; IMD47","type":"exact"},{"name":"immunodeficiency and hepatopathy with or without neurologic features","type":"related"},{"name":"immunodeficiency type 47","type":"exact"},{"name":"primary immunodeficiency disease caused by mutation in ATP6AP1","type":"exact"}],"termid":"MONDO:0010504","terms_by_termid":{"MONDO:0010504":null},"xrefs":{"Monarch":{"xref_id":"0010504"}}}


id: PBO:0002572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cargo-transport protein Ypp1 (predicted)","termid":"PBO:0002572"}


id: GO:0047521
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-alpha,7-alpha,12-beta-trihydroxy-5-beta-cholanate + NADP+ = 3-alpha,7-alpha-dihydroxy-12-oxo-5-beta-cholanate + H+ + NADPH.","definition_xrefs":["RHEA:21424"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0033764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"12-beta-hydroxysteroid dehydrogenase (NADP+) activity","secondary_identifiers":["MetaCyc:12-BETA-HYDROXYSTEROID-DEHYDROGENASE-RXN","EC:1.1.1.238","KEGG_REACTION:R03495"],"synonyms":[{"name":"12beta-hydroxy steroid (nicotinamide adenine dinucleotide phosphate) dehydrogenase activity","type":"broad"},{"name":"12beta-hydroxysteroid dehydrogenase activity","type":"broad"},{"name":"12beta-hydroxysteroid:NADP+ 12-oxidoreductase activity","type":"broad"},{"name":"3alpha,7alpha,12beta-trihydroxy-5beta-cholanate dehydrogenase activity","type":"broad"}],"termid":"GO:0047521"}


id: GO:0072247
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into a metanephric glomerular parietal epithelial cell. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. These cells may also give rise to podocytes.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerular parietal epithelial cell fate commitment","termid":"GO:0072147"},{"relation_name":"is_a","term_name":"metanephric glomerular epithelial cell fate commitment","termid":"GO:0072315"},{"relation_name":"part_of","term_name":"metanephric glomerular parietal epithelial cell differentiation","termid":"GO:0072245"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric glomerular parietal epithelial cell fate commitment","synonyms":[{"name":"metanephric Bowman's capsule cell fate commitment","type":"exact"}],"termid":"GO:0072247"}


id: GO:0046337
data:
  {"annotated_genes":["SJAG_02902","SJAG_01918","SJAG_04792","SJAG_04319","SJAG_03524","SJAG_01233","SJAG_04628","SJAG_02980"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75201,68686,62679,94832,72580,105772,77051,80860],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006646"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine. It is a major structural phospholipid in mammalian systems. It tends to be more abundant than phosphatidylcholine in the internal membranes of the cell and is an abundant component of prokaryotic membranes.","definition_xrefs":["GOC:curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycerophospholipid metabolic process","termid":"GO:0006650"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01233":null,"SJAG_01918":null,"SJAG_02902":null,"SJAG_02980":null,"SJAG_03524":null,"SJAG_04319":null,"SJAG_04628":null,"SJAG_04792":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"phosphatidylethanolamine metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"phosphatidylethanolamine metabolism","type":"exact"}],"termid":"GO:0046337","terms_by_termid":{"GO:0006646":null}}


id: FYECO:0000208
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ammonium chloride was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ NH4Cl","synonyms":[{"name":"ammonium chloride added","type":"exact"}],"termid":"FYECO:0000208"}


