# terms

id: PBO:0064522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase III subunit C","termid":"PBO:0064522"}


id: PBO:0026835
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_poly(A)_polymerase_activity","termid":"PBO:0026835"}


id: PBO:0061786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oncomodulin 2","termid":"PBO:0061786"}


id: GO:0072495
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A class of nuclear body in the eukaryotic host cell, first seen after silver staining by Ramon y Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA. The host is the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell nuclear part","termid":"GO:0044094"},{"relation_name":"part_of","term_name":"host cell nucleoplasm","termid":"GO:0044095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell Cajal body","synonyms":[{"name":"coiled body of host","type":"exact"},{"name":"host cell coiled body","type":"exact"}],"termid":"GO:0072495"}


id: MONDO:0017584
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare bone disease that arises due to secondary hyperparathyroidism in patients with chronic renal failure receiving dialysis characterized by 'uglifying' the appearance of the face","definition_xrefs":["PMID:27545627","PMID:15490409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone disorder","termid":"MONDO:0005381"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sagliker syndrome","secondary_identifiers":["GARD:21233","Orphanet:300493","MEDGEN:1808631","UMLS:C5681093"],"termid":"MONDO:0017584","xrefs":{"Monarch":{"xref_id":"0017584"}}}


id: PBO:0054214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1594","termid":"PBO:0054214"}


id: GO:0038069
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: a phosphorylated MAP kinase + H2O = a MAP kinase + phosphate, where the MAP kinase (MAPK) is part of a MAPK signaling cascade that contributes to cell wall biogenesis.","definition_xrefs":["GOC:signaling"],"gene_count":0,"genotype_count":0,"name":"obsolete MAP kinase phosphatase activity involved in regulation of cell wall biogenesis (obsolete GO:0038069)","synonyms":[{"name":"Mpk1 phosphatase activity","type":"narrow"},{"name":"Slt2 phosphatase activity","type":"narrow"}],"termid":"GO:0038069"}


id: PBO:0062985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"parkin coregulated","termid":"PBO:0062985"}


id: GO:0046267
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of triethanolamine, a combustible, hygroscopic, colorless liquid commonly used in dry-cleaning solutions, cosmetics, detergents, textile processing, wool scouring, and as a corrosion inhibitor and pharmaceutical alkalizing agent.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete triethanolamine catabolic process (obsolete GO:0046267)","synonyms":[{"name":"triethanolamine breakdown","type":"exact"},{"name":"triethanolamine catabolism","type":"exact"},{"name":"triethanolamine degradation","type":"exact"}],"termid":"GO:0046267"}


id: GO:0086088
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a potassium ion by a voltage-gated channel through the plasma membrane of a Purkinje myocyte contributing to the repolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated potassium channel activity involved in cardiac muscle cell action potential repolarization","termid":"GO:0086008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"voltage-gated potassium channel activity involved in Purkinje myocyte action potential repolarization","termid":"GO:0086088"}


id: GO:0042985
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of amyloid precursor protein (APP), the precursor of amyloid-beta.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of glycoprotein biosynthetic process","termid":"GO:0010561"},{"relation_name":"is_a","term_name":"regulation of amyloid precursor protein biosynthetic process","termid":"GO:0042984"},{"relation_name":"negatively_regulates","term_name":"amyloid precursor protein biosynthetic process","termid":"GO:0042983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of amyloid precursor protein biosynthetic process","synonyms":[{"name":"down regulation of amyloid precursor protein biosynthetic process","type":"exact"},{"name":"down-regulation of amyloid precursor protein biosynthetic process","type":"exact"},{"name":"downregulation of amyloid precursor protein biosynthetic process","type":"exact"},{"name":"inhibition of amyloid precursor protein biosynthetic process","type":"narrow"},{"name":"negative regulation of APP biosynthesis","type":"exact"},{"name":"negative regulation of APP biosynthetic process","type":"exact"},{"name":"negative regulation of amyloid precursor protein anabolism","type":"exact"},{"name":"negative regulation of amyloid precursor protein biosynthesis","type":"exact"},{"name":"negative regulation of amyloid precursor protein formation","type":"exact"},{"name":"negative regulation of amyloid precursor protein synthesis","type":"exact"}],"termid":"GO:0042985"}


id: MONDO:0031001
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vitreoretinopathy with phalangeal epiphyseal dysplasia","secondary_identifiers":["UMLS:C1852989","MEDGEN:343940","OMIM:619248"],"synonyms":[{"name":"VPED","type":"exact"}],"termid":"MONDO:0031001","xrefs":{"Monarch":{"xref_id":"0031001"}}}


id: GO:0071853
data:
  {"annotated_genes":["SJAG_01171","SJAG_01017","SJAG_02718","SJAG_01888","SJAG_03444","SJAG_05001","SJAG_03646","SJAG_00667"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103741,90866,90045,109884,113148,95795,103740,101939],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904541"}]},"cv_name":"biological_process","definition":"A cellular process that results in the breakdown of a fungal-type cell wall.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fungal-type cell wall organization","termid":"GO:0031505"},{"relation_name":"is_a","term_name":"cell wall disassembly","termid":"GO:0044277"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00667":null,"SJAG_01017":null,"SJAG_01171":null,"SJAG_01888":null,"SJAG_02718":null,"SJAG_03444":null,"SJAG_03646":null,"SJAG_05001":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0071554","GO:0008150"],"is_obsolete":false,"name":"fungal-type cell wall disassembly","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0071853","terms_by_termid":{"GO:1904541":null}}


id: GO:0044630
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that modulates the frequency, rate or extent of the lectin pathway of complement activation, in a different organism.","definition_xrefs":["GOC:jl","PMID:20837040"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation of complement activation, lectin pathway in another organism (obsolete GO:0044630)","synonyms":[{"name":"modulation of complement activation, lectin pathway in other organism","type":"exact"},{"name":"regulation of complement activation, lectin pathway in other organism","type":"exact"}],"termid":"GO:0044630"}


id: PBO:0000006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene characterisation status","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dubious","termid":"PBO:0000006"}


id: PBO:0000853
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.1.1.100","termid":"PBO:0000853"}


id: FYPO:0002530
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleoplasm is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to nucleus during vegetative growth","termid":"FYPO:0001514"},{"relation_name":"is_a","term_name":"abnormal protein localization to nucleoplasm","termid":"FYPO:0002529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to nucleoplasm","synonyms":[{"name":"decreased protein localisation to nucleoplasm","type":"exact"},{"name":"decreased protein localization to nucleoplasm during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to nucleoplasm during vegetative growth","type":"exact"},{"name":"reduced protein localization to nucleoplasm","type":"exact"}],"termid":"FYPO:0002530"}


id: PBO:0059141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPHOSPH10 pseudogene 8","termid":"PBO:0059141"}


id: MONDO:0030263
data:
  {"annotated_genes":["SJAG_03761"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88258],"is_not":false,"summary":null,"term":"MONDO:0030263"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"POLR3-related leukodystrophy","termid":"MONDO:0700282"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03761":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"leukodystrophy, hypomyelinating, 21","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1778269","UMLS:C5543334","DOID:0070407","OMIM:619310"],"synonyms":[{"name":"HLD21","type":"exact"},{"name":"leukodystrophy, hypomyelinating, 21","type":"exact"}],"termid":"MONDO:0030263","terms_by_termid":{"MONDO:0030263":null},"xrefs":{"Monarch":{"xref_id":"0030263"}}}


id: PBO:0056659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 26","termid":"PBO:0056659"}


id: GO:1903042
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of chondrocyte hypertrophy.","definition_xrefs":["GO_REF:0000058","GOC:mr","GOC:TermGenie","PMID:23928032"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell growth","termid":"GO:0030308"},{"relation_name":"is_a","term_name":"negative regulation of developmental growth","termid":"GO:0048640"},{"relation_name":"is_a","term_name":"negative regulation of chondrocyte development","termid":"GO:0061182"},{"relation_name":"is_a","term_name":"regulation of chondrocyte hypertrophy","termid":"GO:1903041"},{"relation_name":"negatively_regulates","term_name":"chondrocyte hypertrophy","termid":"GO:0003415"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of chondrocyte hypertrophy","synonyms":[{"name":"down regulation of chondrocyte hypertrophy","type":"exact"},{"name":"down-regulation of chondrocyte hypertrophy","type":"exact"},{"name":"downregulation of chondrocyte hypertrophy","type":"exact"},{"name":"inhibition of chondrocyte hypertrophy","type":"narrow"}],"termid":"GO:1903042"}


id: MONDO:0017937
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant intermediate Charcot-Marie-Tooth disease","termid":"MONDO:0019548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244","MONDO:0000426"],"is_obsolete":false,"name":"autosomal dominant intermediate Charcot-Marie-Tooth disease with neuropathic pain","secondary_identifiers":["UMLS:C4755257","Orphanet:324585","GARD:21446","MEDGEN:1650625"],"termid":"MONDO:0017937","xrefs":{"Monarch":{"xref_id":"0017937"}}}


id: PBO:0051660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"internexin neuronal intermediate filament protein alpha","termid":"PBO:0051660"}


id: PBO:0034781
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WT overexpression expression profiling","termid":"PBO:0034781"}


id: GO:1902045
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of Fas signaling pathway.","definition_xrefs":["GOC:TermGenie","PMID:17245429"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of Fas signaling pathway","termid":"GO:1902044"},{"relation_name":"negatively_regulates","term_name":"Fas signaling pathway","termid":"GO:0036337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of Fas signaling pathway","synonyms":[{"name":"down regulation of Apo-1 signaling pathway","type":"exact"},{"name":"down regulation of CD95 signaling pathway","type":"exact"},{"name":"down regulation of FAS ligand-Fas signaling pathway","type":"narrow"},{"name":"down regulation of Fas receptor signaling pathway","type":"exact"},{"name":"down regulation of Fas signaling pathway","type":"exact"},{"name":"down regulation of Fas-FasL signaling pathway","type":"narrow"},{"name":"down regulation of FasL signaling pathway","type":"related"},{"name":"down regulation of FasR signaling pathway","type":"exact"},{"name":"down-regulation of Apo-1 signaling pathway","type":"exact"},{"name":"down-regulation of CD95 signaling pathway","type":"exact"},{"name":"down-regulation of FAS ligand-Fas signaling pathway","type":"narrow"},{"name":"down-regulation of Fas receptor signaling pathway","type":"exact"},{"name":"down-regulation of Fas signaling pathway","type":"exact"},{"name":"down-regulation of Fas-FasL signaling pathway","type":"narrow"},{"name":"down-regulation of FasL signaling pathway","type":"related"},{"name":"down-regulation of FasR signaling pathway","type":"exact"},{"name":"downregulation of Apo-1 signaling pathway","type":"exact"},{"name":"downregulation of CD95 signaling pathway","type":"exact"},{"name":"downregulation of FAS ligand-Fas signaling pathway","type":"narrow"},{"name":"downregulation of Fas receptor signaling pathway","type":"exact"},{"name":"downregulation of Fas signaling pathway","type":"exact"},{"name":"downregulation of Fas-FasL signaling pathway","type":"narrow"},{"name":"downregulation of FasL signaling pathway","type":"related"},{"name":"downregulation of FasR signaling pathway","type":"exact"},{"name":"inhibition of Apo-1 signaling pathway","type":"narrow"},{"name":"inhibition of CD95 signaling pathway","type":"narrow"},{"name":"inhibition of FAS ligand-Fas signaling pathway","type":"narrow"},{"name":"inhibition of Fas receptor signaling pathway","type":"narrow"},{"name":"inhibition of Fas signaling pathway","type":"narrow"},{"name":"inhibition of Fas-FasL signaling pathway","type":"narrow"},{"name":"inhibition of FasL signaling pathway","type":"related"},{"name":"inhibition of FasR signaling pathway","type":"narrow"},{"name":"negative regulation of Apo-1 signaling pathway","type":"exact"},{"name":"negative regulation of CD95 signaling pathway","type":"exact"},{"name":"negative regulation of FAS ligand-Fas signaling pathway","type":"narrow"},{"name":"negative regulation of Fas receptor signaling pathway","type":"exact"},{"name":"negative regulation of Fas-FasL signaling pathway","type":"narrow"},{"name":"negative regulation of FasL signaling pathway","type":"related"},{"name":"negative regulation of FasR signaling pathway","type":"exact"}],"termid":"GO:1902045"}


id: PBO:0054020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1350","termid":"PBO:0054020"}


id: GO:0070694
data:
  {"annotated_genes":["SJAG_01974"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77460],"is_not":false,"summary":null,"term":"GO:0070694"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-hydroxymethyl-dUMP + H2O = 2-deoxy-D-ribose 5-phosphate + 5-hydroxymethyluracil.","definition_xrefs":["PMID:17234634","RHEA:77099"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing N-glycosyl compounds","termid":"GO:0016799"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01974":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016798","GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"5-hydroxymethyl-dUMP N-hydrolase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-8953339"],"synonyms":[{"name":"deoxynucleoside 5'-monophosphate N-glycosidase activity","type":"broad"}],"termid":"GO:0070694","terms_by_termid":{"GO:0070694":null}}


id: PBO:0044641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decapping enzyme, scavenger","termid":"PBO:0044641"}


id: SOFP:orf_classification
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","definition":"gene call confidence flag","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orf_classification","termid":"SOFP:orf_classification"}


id: PBO:0026989
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_mitochondrial_membrane_potential","termid":"PBO:0026989"}


id: GO:0042873
data:
  {"annotated_genes":["SJAG_04905","SJAG_04920"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94264],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140270"},{"annotations":[91700],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0035432"}]},"cv_name":"biological_process","definition":"The process in which aldonate is transported across a lipid bilayer, from one side of a membrane to the other.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transport","termid":"GO:0015718"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04905":null,"SJAG_04920":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"aldonate transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"aldonate transport","type":"related"}],"termid":"GO:0042873","terms_by_termid":{"GO:0035432":null,"GO:0140270":null}}


id: PBO:0075885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST6GAL2 intronic transcript 1","termid":"PBO:0075885"}


id: PBO:0069858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1145, pseudogene","termid":"PBO:0069858"}


id: PBO:0084502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meiosis-specific protein required for prospore membrane morphogenesis; required for the proper shape of the prospore membrane (PSM) and for spore wall formation; functions cooperatively with SPO71 in PSM elongation; physically interacts with Spo71p; genetically antagonistic to SPO1, similar to SPO71; localizes to the PSM; required for spore wall formation during sporulation; dispensable for both nuclear divisions during meiosis; dysferlin domain-only protein","termid":"PBO:0084502"}


id: MONDO:0019181
data:
  {"annotated_genes":["SJAG_01269","SJAG_00786","SJAG_04616","SJAG_04022","SJAG_01047","SJAG_05326","SJAG_01412","SJAG_02878","SJAG_02422","SJAG_02238","SJAG_03909","SJAG_03471","SJAG_02058","SJAG_00845"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86764],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010659"},{"annotations":[87644],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0026723"},{"annotations":[87770,87769],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0958200"},{"annotations":[87752],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0975828"},{"annotations":[87049],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010497"},{"annotations":[87660],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0049222"},{"annotations":[88660],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010447"},{"annotations":[88809,88810],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010361"},{"annotations":[88645],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010451"},{"annotations":[87944,87945],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010313"},{"annotations":[86765],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010660"}]},"cv_name":"mondo","definition":"Nonspecific X-linked intellectual deficiencies (MRX) belong to the family of sex-linked intellectual deficiencies (XLMR). In contrast to syndromic or specific X-linked intellectual deficiencies (MRXS), which also present with associated physical, neurological and/or psychiatric manifestations, intellectual deficiency is the only symptom of MRX.","definition_xrefs":["Orphanet:777"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic intellectual disability","termid":"MONDO:0000509"},{"relation_name":"is_a","term_name":"X-linked intellectual disability","termid":"MONDO:0100284"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00786":null,"SJAG_00845":null,"SJAG_01047":null,"SJAG_01269":null,"SJAG_01412":null,"SJAG_02058":null,"SJAG_02238":null,"SJAG_02422":null,"SJAG_02878":null,"SJAG_03471":null,"SJAG_03909":null,"SJAG_04022":null,"SJAG_04616":null,"SJAG_05326":null},"genotype_count":0,"is_obsolete":false,"name":"non-syndromic X-linked intellectual disability","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:18640","MEDGEN:502019","OMIMPS:309530","UMLS:C3501611","MESH:C564490","DOID:0050776"],"synonyms":[{"name":"X-linked non-specific intellectual disability","type":"exact"},{"name":"X-linked non-syndromic intellectual disability","type":"exact"},{"name":"intellectual disability, X-linked, nonsyndromic","type":"exact"},{"name":"intellectual disability, nonsyndromic, X-linked","type":"exact"},{"name":"isolated X-linked intellectual disability","type":"related"},{"name":"mental retardation, X-linked, nonsyndromic","type":"exact"},{"name":"mental retardation, nonsyndromic, X-linked","type":"exact"},{"name":"non-specific X-linked intellectual disability","type":"exact"},{"name":"non-specific X-linked mental retardation","type":"exact"},{"name":"non-syndromic X-linked intellectual disability","type":"exact"},{"name":"non-syndromic intellectual disability, X-linked","type":"exact"},{"name":"nonsyndromic X-linked intellectual disability","type":"exact"}],"termid":"MONDO:0019181","terms_by_termid":{"MONDO:0010313":null,"MONDO:0010361":null,"MONDO:0010447":null,"MONDO:0010451":null,"MONDO:0010497":null,"MONDO:0010659":null,"MONDO:0010660":null,"MONDO:0026723":null,"MONDO:0049222":null,"MONDO:0958200":null,"MONDO:0975828":null},"xrefs":{"Monarch":{"xref_id":"0019181"}}}


id: MONDO:0024642
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A well differentiated, intermediate grade tumor with neuroendocrine differentiation that arises from the stomach. The mitotic count is 2-20 per 10 HPF and/or the Ki67 index is 3 to 20 percent.","definition_xrefs":["NCIT:C95880"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gastric neuroendocrine tumor, well differentiated, low or intermediate grade","termid":"MONDO:0015062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"gastric neuroendocrine tumor G2","secondary_identifiers":["UMLS:C3272407","MEDGEN:474040"],"synonyms":[{"name":"gastric NET G2","type":"exact"},{"name":"gastric neuroendocrine tumor G2","type":"exact"}],"termid":"MONDO:0024642","xrefs":{"Monarch":{"xref_id":"0024642"}}}


id: GO:0035746
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of granzyme A due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"production of molecular mediator of immune response","termid":"GO:0002440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"granzyme A production","termid":"GO:0035746"}


id: GO:0016166
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the dehydrogenation of phytoene to produce a carotenoid intermediate such as phytofluene.","definition_xrefs":["PMID:29176862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors","termid":"GO:0016627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"phytoene dehydrogenase activity","termid":"GO:0016166"}


id: MONDO:0013046
data:
  {"annotated_genes":["SJAG_02369","SJAG_02107","SJAG_00461"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86890,86891,86892],"is_not":false,"summary":null,"term":"MONDO:0013046"}]},"cv_name":"mondo","definition":"Muscle beta-enolase deficiency is a glycolysis disorder reported in one patient to date and characterized clinically by exercise intolerance and myalgia due to severe enolase deficiency in muscle.","definition_xrefs":["Orphanet:99849"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete muscular glycogenosis (obsolete MONDO:0016118)","termid":"MONDO:0016118"},{"relation_name":"is_a","term_name":"disorder of glycogen metabolism","termid":"MONDO:0002412"},{"relation_name":"is_a","term_name":"disorder of glycolysis","termid":"MONDO:0017688"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00461":null,"SJAG_02107":null,"SJAG_02369":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0019254"}],"interesting_parent_ids":["MONDO:0019254","MONDO:0005066","MONDO:0037792"],"is_obsolete":false,"name":"glycogen storage disease due to muscle beta-enolase deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C567861","NANDO:1200835","OMIM:612932","UMLS:C2752027","icd11.foundation:821809975","GARD:2125","MEDGEN:442873"],"synonyms":[{"name":"GSD 13","type":"related"},{"name":"GSD due to muscle beta-enolase deficiency","type":"exact"},{"name":"GSD13","type":"related"},{"name":"GSDXIII","type":"exact"},{"name":"enolase 3 deficiency","type":"related"},{"name":"enolase-Beta deficiency","type":"related"},{"name":"glycogen storage disease 13","type":"related"},{"name":"glycogen storage disease XIII","type":"related"},{"name":"glycogen storage disease due to muscle beta-enolase deficiency","type":"exact"},{"name":"glycogen storage disease type 13","type":"exact"},{"name":"glycogenosis due to muscle beta-enolase deficiency","type":"exact"},{"name":"glycogenosis type 13","type":"exact"},{"name":"muscle enolase deficiency","type":"exact"},{"name":"muscular enolase deficiency","type":"exact"}],"termid":"MONDO:0013046","terms_by_termid":{"MONDO:0013046":null},"xrefs":{"Monarch":{"xref_id":"0013046"}}}


id: GO:0035000
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. An oligosaccharyltransferase (OST) complex that contains the seven polypeptides found in OST complex I, plus heterotrimeric Sec61alpha-beta-gamma and the tetrameric TRAP complex. Of the three forms of mammalian OST complexes identified, the OSTIII complex has the strongest affinity for ribosomes.","definition_xrefs":["PMID:15835887"],"gene_count":0,"genotype_count":0,"name":"obsolete oligosaccharyltransferase III complex (obsolete GO:0035000)","synonyms":[{"name":"OSTCIII","type":"exact"}],"termid":"GO:0035000"}


id: PBO:0005849
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.2.1.11","termid":"PBO:0005849"}


id: PBO:0048825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit gamma 10 pseudogene 1","termid":"PBO:0048825"}


id: PBO:0089545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic translation associated GTP binding protein Gtp1","termid":"PBO:0089545"}


id: PBO:0035792
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_deacetylation_during_vegetative_growth","termid":"PBO:0035792"}


id: PBO:0031432
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_cortical_patch_morphology","termid":"PBO:0031432"}


id: PBO:0038724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin gamma 1 pseudogene 19","termid":"PBO:0038724"}


id: PBO:0068695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 76, pseudogene","termid":"PBO:0068695"}


id: PBO:0082467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Calcium permeable gated cation channel; functions as an osmosensitive, calcium-permeable cation channel when expressed in a heterologous system; may be involved in detoxification; similar to Arabidopsis CSC1","termid":"PBO:0082467"}


id: MONDO:0700267
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary cancer predisposition due to variation(s) in the BARD1 gene. Germline pathogenic or likely pathogenic variants in the BARD1 gene confer a moderate risk of breast cancer, inherited in an autosomal dominant pattern, increasingly documented to be specific to triple negative breast cancer in women. BARD1 cancer susceptibility syndrome is also associated with other tumour types including neuroblastoma.","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BARD1-related cancer predisposition","termid":"MONDO:0700267","xrefs":{"Monarch":{"xref_id":"0700267"}}}


id: GO:0019091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a lrRNA, large subunit ribosomal ribonucleic acid, is transported from the mitochondrial matrix into the cytosol.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial rRNA export from mitochondrion","termid":"GO:0019090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"mitochondrial lrRNA export from mitochondrion","synonyms":[{"name":"export of mitochondrial lrRNA","type":"broad"},{"name":"mitochondrial lrRNA export","type":"exact"},{"name":"mitochondrial lrRNA export from mitochondria","type":"exact"},{"name":"mitochondrial lrRNA export out of mitochondrion","type":"exact"},{"name":"mitochondrial lrRNA transport from mitochondrion","type":"exact"},{"name":"mitochondrial lrRNA, mitochondrial export","type":"exact"}],"termid":"GO:0019091"}


id: PATO:0000070
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"The number of entities of this type that are part of the whole organism.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"qualitative","termid":"PATO:0000068"},{"relation_name":"reciprocal_of","term_name":"has number of","termid":"PATO:0001555"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amount","secondary_identifiers":["PATO:0000053","PATO:0000071","PATO:0001169","PATO:0001226"],"synonyms":[{"name":"count","type":"exact"},{"name":"count in organism","type":"related"},{"name":"number","type":"related"},{"name":"presence","type":"related"},{"name":"presence or absence in organism","type":"exact"},{"name":"quantitative","type":"exact"}],"termid":"PATO:0000070"}


id: PBO:0002180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CPA1 sodium ion/proton antiporter (predicted)","termid":"PBO:0002180"}


id: PBO:0066606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ras homolog family member U","termid":"PBO:0066606"}


id: GO:0086030
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An adrenergic receptor signaling pathway that contributes to a reduction in cardiac muscle contraction. Beta-adrenergic receptor-induced cardiac relaxation is achieved by a GPCR-activated adenylate cyclase generating cAMP; cAMP then activates the cAMP-dependent protein kinase A (PKA), which phosphorylates the sarcoplasmic reticulum (SR) membrane protein PLB. In its non-phosphorylated state, PLB acts as an inhibitor of the ATPase Ca(2+) pump of the cardiac SR (SERCA2a); inhibition of the pump is relieved upon phosphorylation. The pump removes Ca(2+) from the cytoplasm, thereby preventing cytosolic Ca(2+)-dependent activation of contractile proteins, leading to enhanced muscle relaxation.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF","PMID:10571541"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process","termid":"GO:0086023"},{"relation_name":"part_of","term_name":"relaxation of cardiac muscle","termid":"GO:0055119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"adenylate cyclase-activating adrenergic receptor signaling pathway involved in cardiac muscle relaxation","synonyms":[{"name":"Gs-coupled adrenergic receptor signaling pathway involved in cardiac muscle relaxation","type":"exact"},{"name":"adrenergic receptor signaling pathway involved in cardiac muscle relaxation","type":"exact"},{"name":"adrenergic receptor signaling pathway involved in cardiac muscle relaxation via activation of AC","type":"related"},{"name":"adrenergic receptor-induced cardiac relaxation","type":"related"}],"termid":"GO:0086030"}


id: MONDO:1012267
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"androgen insensitivity syndrome, non-human animal","termid":"MONDO:1011919"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"androgen insensitivity syndrome, pig","secondary_identifiers":["OMIA:000991-9823"],"synonyms":[{"name":"AIS, pig","type":"exact"}],"termid":"MONDO:1012267","xrefs":{"Monarch":{"xref_id":"1012267"}}}


id: PBO:0048343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 54","termid":"PBO:0048343"}


id: GO:0098764
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A meiotic cell cycle phase prior to a during which some part of meiosis I nuclear division or the proceeding cytokinesis occurs.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic cell cycle phase","termid":"GO:0098762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"meiosis I cell cycle phase","termid":"GO:0098764"}


id: PBO:0088305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endosomal and vacuolar ubiquitin-protein ligase E3/phosphatidylinositol(3)-phosphate binding protein Pib1","termid":"PBO:0088305"}


id: GO:0046762
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A viral budding that starts with formation of a membrane curvature in the host ER membrane.","definition_xrefs":["VZ:1947","ISBN:0072370319","GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral budding","termid":"GO:0046755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral budding from endoplasmic reticulum membrane","secondary_identifiers":["GO:0046764","GO:0046751"],"synonyms":[{"name":"ER membrane viral budding","type":"exact"},{"name":"ER membrane viral budding during viral capsid envelopment","type":"related"},{"name":"endoplasmic reticulum membrane viral budding","type":"exact"},{"name":"endoplasmic reticulum membrane viral budding during viral capsid envelopment","type":"related"},{"name":"viral budding from ER membrane","type":"exact"},{"name":"viral budding from ER membrane by viral capsid envelopment","type":"related"},{"name":"viral budding from ER membrane during viral capsid envelopment","type":"related"},{"name":"virus budding from ER membrane","type":"exact"},{"name":"virus budding from ER membrane by viral capsid envelopment","type":"exact"},{"name":"virus budding from ER membrane during viral capsid envelopment","type":"related"}],"termid":"GO:0046762"}


id: GO:1902162
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator.","definition_xrefs":["PMID:17719541","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator (obsolete GO:1902162)","termid":"GO:1902162"}


id: PBO:0002527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxal reductase Plr1","termid":"PBO:0002527"}


id: GO:0061663
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of NEDD8 to a substrate protein via the reaction X-NEDD8 + S = X + S-NEDD8, where X is either an E2 or E3 enzyme, the X-NEDD8 linkage is a thioester bond, and the S-NEDD8 linkage is an isopeptide bond between the C-terminal amino acid of NEDD8 and the epsilon-amino group of lysine residues in the substrate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NEDD8 transferase activity","termid":"GO:0019788"},{"relation_name":"is_a","term_name":"ubiquitin-like protein ligase activity","termid":"GO:0061659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0019787","GO:0016746","GO:0140096","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"NEDD8 ligase activity","synonyms":[{"name":"E3","type":"broad"}],"termid":"GO:0061663"}


id: GO:0052615
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ent-kaur-16-ene + 3 O2 + 3 reduced [NADPH--hemoprotein reductase] = ent-kaur-16-en-19-oate + 4 H+ + 4 H2O + 3 oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["RHEA:32323"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"ent-kaurene oxidase activity","secondary_identifiers":["EC:1.14.14.86","MetaCyc:1.14.13.78-RXN"],"termid":"GO:0052615"}


id: MONDO:0010682
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete myoclonic epilepsy, progressive, X-linked (obsolete MONDO:0010682)","secondary_identifiers":["OMIM:310370"],"synonyms":[{"name":"myoclonic epilepsy, progressive","type":"exact"}],"termid":"MONDO:0010682","xrefs":{"Monarch":{"xref_id":"0010682"}}}


id: MONDO:0019056
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id: PBO:0085526
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S26, no bacterial homolog; RPS26B has a paralog, RPS26A, that arose from the whole genome duplication; human homolog can partially complement an RPS26A, RPS26B double null mutant; mutations in the human gene are associated with Diamond-Blackfan anemia","termid":"PBO:0085526"}


id: GO:0047497
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a mitochondrion along a microtubule, mediated by motor proteins.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of mitochondrion localization, microtubule-mediated","termid":"GO:0034643"},{"relation_name":"is_a","term_name":"organelle transport along microtubule","termid":"GO:0072384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"mitochondrion transport along microtubule","synonyms":[{"name":"mitochondrial migration along microtubule","type":"exact"},{"name":"mitochondrial transport along microtubule","type":"exact"}],"termid":"GO:0047497"}


id: PBO:0067177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 234, pseudogene","termid":"PBO:0067177"}


id: GO:0106002
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that binds to, and promotes stabilization of, mRNA molecules containing the major coding region instability determinant (mCRD) by bridging the mCRD domain and the poly(A) tail of the mRNA. In human, it consists of CSDE1, HNRPD, PABPC1, PAIP1 and SYNCRIP.","definition_xrefs":["GOC:bhm","PMID:11051545"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005829","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"mCRD-mediated mRNA stability complex","synonyms":[{"name":"mCRD-poly(A)-bridging complex","type":"exact"},{"name":"major coding region determinant of instability-mediated mRNA stability complex","type":"exact"},{"name":"major coding region instability determinant-mediated mRNA stability complex","type":"exact"},{"name":"major coding region instability determinant-poly(A)-bridging complex","type":"exact"},{"name":"major coding-region determinant of instability - poly(A) tail-bridging complex","type":"exact"}],"termid":"GO:0106002"}


id: MONDO:0007513
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ectodermal dysplasia with adrenal cyst","secondary_identifiers":["MEDGEN:342106","UMLS:C1851850","MESH:C538015","OMIM:129550","Orphanet:3391"],"synonyms":[{"name":"Odonto-onycho-hypohidrotic dysplasia-midline scalp defects syndrome","type":"exact"},{"name":"ectodermal dysplasia with adrenal cyst","type":"exact"}],"termid":"MONDO:0007513","xrefs":{"Monarch":{"xref_id":"0007513"}}}


id: MONDO:0007577
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"esophageal ring, lower","secondary_identifiers":["OMIM:133240","ICD9:750.3","MEDGEN:83320","UMLS:C0341137","SCTID:235623002","MESH:C562765"],"synonyms":[{"name":"esophageal ring, lower","type":"exact"}],"termid":"MONDO:0007577","xrefs":{"Monarch":{"xref_id":"0007577"}}}


id: FYPO:0002218
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which all vegetative cells arising from a population of germinated spores are inviable, and have germ tubes with normal morphology (i.e. size, shape, and structure) that do not septate.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable vegetative cell population after spore germination, normal unseptated germ tube morphology (obsolete FYPO:0002218)","synonyms":[{"name":"inviable germinated spore population, normal unseptated germ tube morphology","type":"exact"}],"termid":"FYPO:0002218"}


id: GO:0031455
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving glycine betaine, N-trimethylglycine.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid betaine metabolic process","termid":"GO:0006577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glycine betaine metabolic process","synonyms":[{"name":"N-trimethylglycine metabolic process","type":"exact"},{"name":"N-trimethylglycine metabolism","type":"exact"},{"name":"glycine betaine metabolism","type":"exact"}],"termid":"GO:0031455"}


id: PBO:0077057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thrombospondin type 1 domain containing 4","termid":"PBO:0077057"}


id: PBO:0071902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 40","termid":"PBO:0071902"}


id: PBO:0075723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sarcalumenin","termid":"PBO:0075723"}


id: MONDO:0014018
data:
  {"annotated_genes":["SJAG_04506","SJAG_04292","SJAG_00199"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87019,87020,87021],"is_not":false,"summary":null,"term":"MONDO:0014018"}]},"cv_name":"mondo","definition":"A rare, complex form of hereditary spastic paraplegia characterized by the onset in early childhood of progressive spastic paraplegia associated with cerebellar signs, short stature, delayed psychomotor development, intellectual disability and, less commonly, foot contractures, dysarthria, dysphagia, strabismus and optic hypoplasia. SPG54 is caused by mutations in the DDHD2 gene (8p11.23) encoding phospholipase DDHD2.","definition_xrefs":["Orphanet:320380"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complex hereditary spastic paraplegia","termid":"MONDO:0015150"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00199":null,"SJAG_04292":null,"SJAG_04506":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"hereditary spastic paraplegia 54","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:723824005","UMLS:C3539495","MEDGEN:761341","GARD:17475","OMIM:615033","DOID:0110806"],"synonyms":[{"name":"DDHD2 autosomal recessive complex spastic paraplegia","type":"exact"},{"name":"SPG54","type":"exact"},{"name":"autosomal recessive complex spastic paraplegia caused by mutation in DDHD2","type":"exact"},{"name":"autosomal recessive spastic paraplegia 54","type":"exact"},{"name":"autosomal recessive spastic paraplegia type 54","type":"exact"},{"name":"hereditary spastic paraplegia type 54","type":"exact"},{"name":"spastic paraplegia 54, autosomal recessive","type":"related"}],"termid":"MONDO:0014018","terms_by_termid":{"MONDO:0014018":null},"xrefs":{"Monarch":{"xref_id":"0014018"}}}


id: PBO:0110369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EPS8 signaling adaptor L3","termid":"PBO:0110369"}


id: PBO:0082641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of inositol phosphorylceramide (IPC) synthase; forms a complex with Aur1p and regulates its activity; required for IPC synthase complex localization to the Golgi; post-translationally processed by Kex2p; KEI1 is an essential gene","termid":"PBO:0082641"}


id: PBO:0061373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophosmin 1 pseudogene 33","termid":"PBO:0061373"}


id: MONDO:0017379
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polyneuropathy-intellectual disability-acromicria-premature menopause syndrome is a rare genetic syndromic intellectual disability characterized by intellectual disability, polyneuropathy, short stature and short limbs, brachydactyly, and premature ovarian insufficiency. Only one familial case with three affected females was described and there have been no further descriptions in the literature since 1971.","definition_xrefs":["Orphanet:2928"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyneuropathy-intellectual disability-acromicria-premature menopause syndrome","secondary_identifiers":["UMLS:C4749397","GARD:4424","MEDGEN:1665486"],"synonyms":[{"name":"Lundberg syndrome","type":"exact"},{"name":"polyneuropathy - intellectual deficit - acromicria - premature menopause","type":"related"},{"name":"polyneuropathy intellectual disability acromicria premature menopause","type":"related"},{"name":"polyneuropathy mental retardation acromicria premature menopause","type":"related"}],"termid":"MONDO:0017379","xrefs":{"Monarch":{"xref_id":"0017379"}}}


id: PBO:0058385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4757","termid":"PBO:0058385"}


id: GO:0043960
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-erythro-3-methylmalyl-CoA = mesaconyl-CoA + H2O.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"L-erythro-3-methylmalyl-CoA dehydratase activity","termid":"GO:0043960"}


id: PBO:0063226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PCDH10 divergent transcript","termid":"PBO:0063226"}


id: PBO:0074685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 65","termid":"PBO:0074685"}


id: PBO:0031879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial glycine transporter Hem25 (predicted)","termid":"PBO:0031879"}


id: MONDO:0007272
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary hypercarotenemia and vitamin A deficiency is an extremely rare metabolic disorder characterized clinically by skin discoloration, elevated levels of carotene and low levels of vitamin A described in fewer than 5 patients to date.","definition_xrefs":["Orphanet:199285"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of vitamin and non-protein cofactor absorption and transport","termid":"MONDO:0017758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"hereditary hypercarotenemia and vitamin A deficiency","secondary_identifiers":["SCTID:726079008","MESH:C567296","UMLS:C2676023","MEDGEN:393944","OMIM:115300","GARD:17090"],"synonyms":[{"name":"Carotenoids, plasma level of, quantitative trait locus 1","type":"related"},{"name":"HCVAD","type":"related"},{"name":"hypercarotenemia and vitamin A deficiency, autosomal dominant","type":"related"}],"termid":"MONDO:0007272","xrefs":{"Monarch":{"xref_id":"0007272"}}}


id: GO:0035454
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of a plastid inner membrane consisting of gene products and protein complexes that are loosely bound to its stromal surface, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:dos","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of lumenal side of plastid thylakoid membrane","termid":"GO:0035450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"extrinsic component of stromal side of plastid inner membrane","synonyms":[{"name":"extrinsic to stromal leaflet of plastid inner membrane","type":"exact"},{"name":"extrinsic to stromal side of plastid inner membrane","type":"narrow"},{"name":"peripheral to stromal side of plastid inner membrane","type":"exact"}],"termid":"GO:0035454"}


id: FYPO:0005698
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which nucleation of microtubules from the equatorial microtubule organizing center does not occur.","definition_xrefs":["PomBase:mah","PMID:19001497"],"direct_ancestors":[{"relation_name":"has_output","term_name":"cytoplasmic microtubules nucleated from eMTOC absent from cell","termid":"FYPO:0004619"},{"relation_name":"is_a","term_name":"abolished cytoplasmic microtubule nucleation","termid":"FYPO:0005693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000054","FYPO:0001320"],"is_obsolete":false,"name":"abolished microtubule nucleation from eMTOC","synonyms":[{"name":"abolished cytoplasmic microtubule nucleation from eMTOC","type":"exact"},{"name":"abolished microtubule nucleation from eMTOC during mitotic cell cycle","type":"exact"},{"name":"abolished microtubule nucleation from eMTOC during vegetative growth","type":"exact"},{"name":"abolished microtubule nucleation from equatorial microtubule organizing center","type":"exact"},{"name":"abolished microtubule nucleation from equatorial microtubule organizing centre","type":"exact"},{"name":"microtubule nucleation from eMTOC abolished","type":"exact"}],"termid":"FYPO:0005698"}


id: PBO:0052593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin subunit alpha 2 pseudogene 2","termid":"PBO:0052593"}


id: PBO:0046882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 8 member A7, pseudogene","termid":"PBO:0046882"}


id: PBO:0116634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARF GTPase 6","termid":"PBO:0116634"}


id: FYPO:0000468
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mating type switching is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process phenotype","termid":"FYPO:0000679"},{"relation_name":"is_a","term_name":"DNA metabolism phenotype during vegetative growth","termid":"FYPO:0001346"},{"relation_name":"is_a","term_name":"abnormal metabolic process during vegetative growth","termid":"FYPO:0001363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormal mating type switching","synonyms":[{"name":"abnormal mating type switching during mitotic cell cycle","type":"related"},{"name":"abnormal mating type switching during vegetative growth","type":"exact"},{"name":"mating type switching: abnormal","type":"related"}],"termid":"FYPO:0000468"}


id: PBO:0003997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase zeta Rev7 (predicted)","termid":"PBO:0003997"}


id: FYPO:0006208
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell differs from normal during a cellular response to copper ion starvation. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered RNA level","termid":"FYPO:0000824"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"altered RNA level during cellular response to copper ion starvation","synonyms":[{"name":"abnormal RNA level during cellular response to copper ion starvation","type":"exact"},{"name":"altered RNA level during cellular response to copper starvation","type":"exact"},{"name":"altered RNA level during copper starvation","type":"exact"},{"name":"altered cellular RNA level during cellular response to copper ion starvation","type":"exact"},{"name":"altered transcript level during cellular response to copper ion starvation","type":"exact"}],"termid":"FYPO:0006208"}


id: FYPO:0000016
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is curved along the long axis. In a curved cell, the long axis follows a smooth bend rather than a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vegetative cell shape","termid":"FYPO:0002196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"curved vegetative cell","synonyms":[{"name":"cell morphology, curved","type":"exact"},{"name":"comma-shaped cell","type":"exact"},{"name":"curved cell","type":"exact"},{"name":"curved cell during vegetative growth","type":"exact"},{"name":"curved vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000016"}


id: PBO:0062489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily B member 5 pseudogene","termid":"PBO:0062489"}


id: PBO:0017550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MCM binding protein homolog Mcb1","termid":"PBO:0017550"}


id: PBO:0030556
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_glutamate_import","termid":"PBO:0030556"}


id: MONDO:0013055
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Stargardt macular degeneration, absent or hypoplastic corpus callosum, intellectual disability, and dysmorphic features","secondary_identifiers":["MEDGEN:1680314","OMIM:612948","MESH:C548086","UMLS:C5193232"],"synonyms":[{"name":"Stargardt macular degeneration absent or hypoplastic corpus callosum intellectual disability and dysmorphic features","type":"related"},{"name":"Stargardt macular degeneration absent or hypoplastic corpus callosum mental retardation and dysmorphic features","type":"related"},{"name":"Stargardt macular degeneration, absent or hypoplastic corpus callosum, intellectual disability, and dysmorphic features","type":"exact"},{"name":"Stargardt macular degeneration, absent or hypoplastic corpus callosum, mental retardation, and dysmorphic features","type":"exact"}],"termid":"MONDO:0013055","xrefs":{"Monarch":{"xref_id":"0013055"}}}


id: MONDO:0957225
data:
  {"annotated_genes":["SJAG_01403"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88272],"is_not":false,"summary":null,"term":"MONDO:0957225"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited neurodegenerative disorder","termid":"MONDO:0024237"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01403":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"neurodegeneration with developmental delay, early respiratory failure, myoclonic seizures, and brain abnormalities","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:620327","MEDGEN:1841069","UMLS:C5830433"],"termid":"MONDO:0957225","terms_by_termid":{"MONDO:0957225":null},"xrefs":{"Monarch":{"xref_id":"0957225"}}}


id: MONDO:0029145
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"orofacial cleft","termid":"MONDO:0000358"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orofacial cleft 8","secondary_identifiers":["OMIM:618149","DOID:0080401","GARD:18308","MEDGEN:377541","UMLS:C1851878"],"synonyms":[{"name":"Cleft 51P With or Without Cleft Palate, Nonsyndromic, 8","type":"related"},{"name":"OFC8","type":"related"},{"name":"OROFACIAL CLEFT 8","type":"related"}],"termid":"MONDO:0029145","xrefs":{"Monarch":{"xref_id":"0029145"}}}


id: MONDO:0016957
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chromosome 6q duplication is a chromosome abnormality that occurs when there is an extra copy of genetic material on the long arm (q) of chromosome 6. The severity of the condition and the signs and symptoms depend on the size and location of the duplication and which genes are involved. Features that often occur in people with chromosome 6q duplication include developmental delay, intellectual disability, behavioral problems and distinctive facial features. In most cases, chromosome 6q duplication occurs de novo or is inherited from a parent with a chromosomal rearrangement such as a balanced translocation. Rarely, it is inherited from a parent with the same duplication. Treatment is based on the signs and symptoms present in each person.","definition_xrefs":["GARD:0005353"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial duplication of chromosome 6","termid":"MONDO:0016927"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial duplication of the long arm of chromosome 6","secondary_identifiers":["UMLS:C5679708","MESH:C537812","icd11.foundation:149091243","GARD:5353","MEDGEN:1826037","Orphanet:262878"],"synonyms":[{"name":"6q duplication","type":"related"},{"name":"6q trisomy","type":"related"},{"name":"Duplication 6q","type":"related"},{"name":"chromosome 6q duplication","type":"related"},{"name":"partial duplication of chromosome 6q","type":"exact"},{"name":"partial duplication of the long arm of chromosome type 6","type":"exact"},{"name":"partial trisomy 6q","type":"related"},{"name":"partial trisomy of chromosome 6q","type":"exact"},{"name":"partial trisomy of the long arm of chromosome 6","type":"exact"},{"name":"trisomy 6q","type":"related"}],"termid":"MONDO:0016957","xrefs":{"Monarch":{"xref_id":"0016957"}}}


id: PBO:0083929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fungal-specific protein of unknown function","termid":"PBO:0083929"}


id: PBO:0083872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein of unknown function; predicted to be part of an SCF ubiquitin protease complex; involved in regulating protein levels of sulfur metabolism enzymes; may interact with ribosomes, based on co-purification experiments","termid":"PBO:0083872"}


id: PBO:0066173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBIS pseudogene 6","termid":"PBO:0066173"}


id: MONDO:0007210
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Brachmann-de Lange-like facial changes with microcephaly, metatarsus adductus, and developmental delay","secondary_identifiers":["MEDGEN:396307","UMLS:C1862171","OMIM:112370","MESH:C566206"],"synonyms":[{"name":"Brachmann-de Lange-like facial changes with microcephaly, metatarsus adductus, and developmental delay","type":"exact"}],"termid":"MONDO:0007210","xrefs":{"Monarch":{"xref_id":"0007210"}}}


id: MONDO:0007437
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Dentin dysplasia type II (DD-II) is a rare mild form of dentin dysplasia (DD) characterized by normal tooth roots but abnormal primary dentition.","definition_xrefs":["Orphanet:99791"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"dentin dysplasia","termid":"MONDO:0015613"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dentin dysplasia type II","secondary_identifiers":["GARD:1806","ICD9:520.5","MEDGEN:315928","OMIM:125420","SCTID:109494000","UMLS:C1527284"],"synonyms":[{"name":"DD-II","type":"exact"},{"name":"DTDP2","type":"exact"},{"name":"Dtdp2","type":"related"},{"name":"anomalous dysplasia of dentin","type":"related"},{"name":"coronal dentin dysplasia","type":"related"},{"name":"dentin dyspalsia, Shields type 2","type":"related"},{"name":"dentin dysplasia, Shields type 2","type":"related"},{"name":"dentin dysplasia, coronal","type":"related"},{"name":"dentin dysplasia, type 2","type":"related"},{"name":"dentin dysplasia, type II","type":"related"},{"name":"pulp stones","type":"related"},{"name":"pulpal dysplasia","type":"related"}],"termid":"MONDO:0007437","xrefs":{"Monarch":{"xref_id":"0007437"}}}


id: PBO:0053327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 158","termid":"PBO:0053327"}


id: PBO:0026844
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_level_of_cytokinesis_gene_mRNA_during_vegetative_growth","termid":"PBO:0026844"}


id: PBO:0069737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1018, pseudogene","termid":"PBO:0069737"}


id: GO:0043638
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of puromycin, an aminonucleoside antibiotic that is a potent inhibitor of translation; produced by the bacterium Streptomyces alboniger.","definition_xrefs":["GOC:jl","Wikipedia:Puromycin"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antibiotic biosynthetic process","termid":"GO:0017000"},{"relation_name":"is_a","term_name":"puromycin metabolic process","termid":"GO:0043637"},{"relation_name":"is_a","term_name":"purine ribonucleoside biosynthetic process","termid":"GO:0046129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"puromycin biosynthetic process","termid":"GO:0043638"}


id: MONDO:0019346
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Sialidosis type 1 (ST-1) is a very rare lysosomal storage disease, and is the normosomatic form of sialidosis, characterized by gait abnormalities, progressive visual loss, bilateral macular cherry red spots and myoclonic epilepsy and ataxia, that usually presents in the second to third decade of life.","definition_xrefs":["Orphanet:812"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"sialidosis","termid":"MONDO:0017734"},{"relation_name":"is_a","term_name":"familial mucolipidosis","termid":"MONDO:0031422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002561","MONDO:0037792"],"is_obsolete":false,"name":"sialidosis type 1","secondary_identifiers":["NANDO:1200117","GARD:7639","icd11.foundation:1154773192","NANDO:2201191","SCTID:723675006","UMLS:C0023806","MEDGEN:44174","SCTID:34960006"],"synonyms":[{"name":"Normomorphic sialidosis","type":"exact"},{"name":"cherry red spot myoclonus syndrome","type":"related"},{"name":"cherry-red spot-myoclonus syndrome","type":"exact"},{"name":"lipomucopolysaccharidosis","type":"exact"},{"name":"myoclonus cherry red spot syndrome","type":"related"},{"name":"normosomatic sialidosis","type":"exact"},{"name":"sialidosis type I","type":"related"}],"termid":"MONDO:0019346","xrefs":{"Monarch":{"xref_id":"0019346"}}}


id: GO:0036474
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any biological process that results in permanent cessation of all vital functions of a cell upon exposure to hydrogen peroxide (H2O2).","definition_xrefs":["GOC:PARL","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete cell death in response to hydrogen peroxide (obsolete GO:0036474)","synonyms":[{"name":"cell death in response to H2O2","type":"exact"},{"name":"hydrogen peroxide-mediated cell death","type":"related"}],"termid":"GO:0036474"}


id: MONDO:0060490
data:
  {"annotated_genes":["SJAG_03964"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88463],"is_not":false,"summary":null,"term":"MONDO:0060490"}]},"cv_name":"mondo","definition":"A rare genetic syndromic intellectual disability characterized by infantile onset of global developmental delay and profound intellectual disability in association with a heterogeneous spectrum of manifestations, such as features of lower motor neuron disease, hypotonia, spasticity, contractures, seizures, respiratory insufficiency, and optic atrophy, among others. Dysmorphic craniofacial features include microcephaly, tall forehead, bitemporal narrowing, flat nasal bridge, low-set ears, and high-arched palate. Brain imaging may show cerebral and cerebellar atrophy, delayed myelination, and thin corpus callosum.","definition_xrefs":["Orphanet:544469"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03964":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with microcephaly, hypotonia, and variable brain anomalies","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:617481","MEDGEN:1380860","GARD:17985","UMLS:C4479566"],"synonyms":[{"name":"NMIHBA","type":"related"},{"name":"neurodevelopmental disorder with microcephaly, hypotonia, and variable brain anomalies","type":"exact"}],"termid":"MONDO:0060490","terms_by_termid":{"MONDO:0060490":null},"xrefs":{"Monarch":{"xref_id":"0060490"}}}


id: PBO:0029060
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-small_vacuoles_present_in_increased_numbers_during_stationary_phase","termid":"PBO:0029060"}


id: GO:0018446
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: pinocarveol = pinocarvone + 2 H+ + 2 e-.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete pinocarveol dehydrogenase activity (obsolete GO:0018446)","termid":"GO:0018446"}


id: PR:P57728
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl2801 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P57728"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L28-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC776.11","synonyms":[{"name":"Spom972h-rpl2801","type":"exact"}],"termid":"PR:P57728"}


id: GO:0002384
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An immune response taking place in the liver.","definition_xrefs":["GOC:jal","ISBN:0781735149","GO_REF:0000022"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organ or tissue specific immune response","termid":"GO:0002251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hepatic immune response","termid":"GO:0002384"}


id: PBO:0086433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative integral membrane protein; member of DUP240 gene family; SWAT-GFP and mCherry fusion proteins localize to the cell periphery and vacuole; YCR007C is not an essential gene","termid":"PBO:0086433"}


id: MONDO:0005307
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Prolonged shortening of the muscle or other soft tissue around a joint, preventing movement of the joint.","definition_xrefs":["MESH:D003286"],"gene_count":0,"genotype_count":0,"name":"obsolete contracture (obsolete MONDO:0005307)","synonyms":[{"name":"muscle contracture","type":"narrow"}],"termid":"MONDO:0005307","xrefs":{"Monarch":{"xref_id":"0005307"}}}


id: PBO:0075608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spondin 2","termid":"PBO:0075608"}


id: PBO:0032756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein Aim19","termid":"PBO:0032756"}


id: PR:Q10112
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC18G6.13 gene.","definition_xrefs":["UniProtKB:Q10112","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C18G6.13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC18G6.13","synonyms":[{"name":"Spom972h-SPAC18G6.13","type":"exact"}],"termid":"PR:Q10112"}


id: PBO:0086677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by gene-trapping, microarray analysis, and genome-wide homology searches; mRNA identified as translated by ribosome profiling data; SWAT-GFP, seamless-GFP and mCherry fusion proteins localize to the endoplasmic reticulum; partially overlaps the dubious ORF YBR126W-B","termid":"PBO:0086677"}


id: GO:0097642
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with any member of the calcitonin family (e.g. adrenomedullin, adrenomedullin 2 (intermedin), amylin, calcitonin and calcitonin gene-related peptides (CGRPs)) to initiate a change in cell activity.","definition_xrefs":["PMID:10871296","GOC:bhm","PMID:12037140","InterPro:IPR003287","PMID:18687416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled peptide receptor activity","termid":"GO:0008528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"calcitonin family receptor activity","termid":"GO:0097642"}


id: MOD:01820
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a cysteine sulhydryl hydrogen with an isotope tagged sulfhydryl reagent group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"},{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"isotope tagged sufhydryl reagent modified cysteine","termid":"MOD:01820"}


id: GO:2000069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of post-embryonic root development.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of post-embryonic development","termid":"GO:0048580"},{"relation_name":"is_a","term_name":"regulation of root development","termid":"GO:2000280"},{"relation_name":"regulates","term_name":"post-embryonic root development","termid":"GO:0048528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of post-embryonic root development","termid":"GO:2000069"}


id: PBO:0051486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IGSF3 pseudogene 1","termid":"PBO:0051486"}


id: PBO:0045088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydrolipoamide S-succinyltransferase pseudogene 1","termid":"PBO:0045088"}


id: PBO:0065578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"parathyroid hormone 2 receptor","termid":"PBO:0065578"}


id: MONDO:0014140
data:
  {"annotated_genes":["SJAG_03188"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87675],"is_not":false,"summary":null,"term":"MONDO:0014140"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy-dystroglycanopathy, type A","termid":"MONDO:0000171"},{"relation_name":"is_a","term_name":"muscle-eye-brain disease","termid":"MONDO:0018939"},{"relation_name":"is_a","term_name":"myopathy caused by variation in GMPPB","termid":"MONDO:0700084"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03188":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005336","MONDO:0005066","MONDO:0002320"],"is_obsolete":false,"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A14","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:15948","DOID:0111233","UMLS:C3809216","OMIM:615350","MEDGEN:815546"],"synonyms":[{"name":"MDDGA14","type":"related"},{"name":"Walker-Warburg syndrome or muscle-eye-brain disease, GMPPB-related","type":"related"},{"name":"muscle-eye-brain-GMPPB related","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 14","type":"related"}],"termid":"MONDO:0014140","terms_by_termid":{"MONDO:0014140":null},"xrefs":{"Monarch":{"xref_id":"0014140"}}}


id: GO:0035228
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops or reduces the activity of the enzyme glutamate-cysteine ligase.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of glutamate-cysteine ligase activity (obsolete GO:0035228)","synonyms":[{"name":"down regulation of glutamate-cysteine ligase activity","type":"exact"},{"name":"down-regulation of glutamate-cysteine ligase activity","type":"exact"},{"name":"downregulation of glutamate-cysteine ligase activity","type":"exact"},{"name":"inhibition of glutamate-cysteine ligase activity","type":"narrow"}],"termid":"GO:0035228"}


id: GO:1905825
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of selenocysteine metabolic process.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:19716792"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of amino acid metabolic process","termid":"GO:0006521"},{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"regulates","term_name":"selenocysteine metabolic process","termid":"GO:0016259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"regulation of selenocysteine metabolic process","synonyms":[{"name":"regulation of selenocysteine metabolism","type":"exact"}],"termid":"GO:1905825"}


id: MONDO:0009318
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hallermann-Streiff syndrome is a rare genetic syndrome characterized mainly by head and facial abnormalities such as bird-like facies (with beak-shaped nose and retrognathia), hypoplastic mandible, brachycephaly with frontal bossing, dental abnormalities (e.g. absence of teeth, natal teeth, supernumerary teeth, severe agenesis of permanent teeth, enamel hypoplasia) hypotrichosis, various ophthalmic disorders (e.g. congenital cataracts, bilateral microphthalmia, ptosis, nystagmus) and atrophy of skin (especially around the center of face and nose) as well as telangiectasia and proportionate short stature. Intellectual disability is reported in some cases.","definition_xrefs":["Orphanet:2108"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"excluded_subClassOf","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"},{"relation_name":"excluded_subClassOf","term_name":"obsolete malformation syndrome with short stature (obsolete MONDO:0015329)","termid":"MONDO:0015329"},{"relation_name":"excluded_subClassOf","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"},{"relation_name":"excluded_subClassOf","term_name":"obsolete slender bone dysplasia (obsolete MONDO:0019699)","termid":"MONDO:0019699"},{"relation_name":"excluded_subClassOf","term_name":"obsolete congenital absence of the eyebrow/eyelashes (obsolete MONDO:0020188)","termid":"MONDO:0020188"},{"relation_name":"excluded_subClassOf","term_name":"obsolete craniofacial anomaly with cataract (obsolete MONDO:0020234)","termid":"MONDO:0020234"},{"relation_name":"excluded_subClassOf","term_name":"obsolete genetic multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome (obsolete MONDO:0043007)","termid":"MONDO:0043007"},{"relation_name":"is_a","term_name":"premature aging syndrome","termid":"MONDO:0019303"},{"relation_name":"is_a","term_name":"primordial dwarfism and slender bone disorder","termid":"MONDO:0800063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019303"}],"interesting_parent_ids":["MONDO:0019303"],"is_obsolete":false,"name":"Hallermann-Streiff syndrome","secondary_identifiers":["NANDO:2200973","SCTID:7903009","NCIT:C84746","OMIM:234100","UMLS:C0018522","GARD:288","MESH:D006210","DOID:4534","MEDGEN:5414","NORD:1888"],"synonyms":[{"name":"FranC'ois dyscephalic syndrome","type":"exact"},{"name":"Francois dyscephalic syndrome","type":"exact"},{"name":"François dyscephalic syndrome","type":"exact"},{"name":"HSS","type":"related"},{"name":"Hallerman - Streiff syndrome","type":"exact"},{"name":"Hallermann Streiff Francois syndrome","type":"related"},{"name":"Hallermann Streiff syndrome","type":"related"},{"name":"Hallermann syndrome","type":"exact"},{"name":"Hallermann's syndrome","type":"exact"},{"name":"Hallermann-Streiff syndrome","type":"exact"},{"name":"oculomandibulofacial syndrome","type":"exact"}],"termid":"MONDO:0009318","xrefs":{"Monarch":{"xref_id":"0009318"}}}


id: MONDO:0000687
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An alopecia areata that involves diffuse loss of hair over the whole scalp.","definition_xrefs":["DOID:0060157"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alopecia areata","termid":"MONDO:0005340"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diffuse alopecia areata","secondary_identifiers":["SCTID:46586006","UMLS:C0263479","MEDGEN:537915","MESH:C531609","icd11.foundation:666274267"],"synonyms":[{"name":"Cazenave's vitiligo","type":"related"},{"name":"Celsus' vitiligo","type":"related"},{"name":"Jonston's alopecia","type":"related"},{"name":"alopecia celsi","type":"related"},{"name":"marginal alopecia","type":"related"},{"name":"patchy alopecia","type":"related"}],"termid":"MONDO:0000687","xrefs":{"Monarch":{"xref_id":"0000687"}}}


id: PBO:0069531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 800, pseudogene","termid":"PBO:0069531"}


id: PBO:0087889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional repressor of nitric oxide oxidase; basic leucine zipper (bZIP) transcription factor; neighboring gene, YOL029C, created by frame-shift at position 708, corresponds to C-terminal part of YAP7 orthologs in other species; YAP7 has a paralog, YAP5, that arose from the whole genome duplication","termid":"PBO:0087889"}


id: PBO:0064313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipid phosphatase 2","termid":"PBO:0064313"}


id: MONDO:0019321
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A heterogeneous group of cases that are clinically diagnosed as Werner syndrome (WS) but do not carry WRN gene mutations. Similar to classical WS caused by WRN mutations, patients generally exhibit an aged appearance and common age-related disorders at earlier ages compared to the general population.","definition_xrefs":["Orphanet:79474"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"progeroid syndrome","termid":"MONDO:0015333"},{"relation_name":"is_a","term_name":"laminopathy","termid":"MONDO:0021106"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atypical Werner syndrome","secondary_identifiers":["MEDGEN:894770","GARD:11910","UMLS:C4275075","icd11.foundation:1661142154","SCTID:715633008"],"synonyms":[{"name":"atypical progeroid syndrome","type":"exact"}],"termid":"MONDO:0019321","xrefs":{"Monarch":{"xref_id":"0019321"}}}


id: PBO:0029435
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination_with_abnormal_germ_tube_morphology","termid":"PBO:0029435"}


id: PBO:0076624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin folding cofactor E like","termid":"PBO:0076624"}


id: MONDO:0100145
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A COVID-19 infection where individuals test positive for SARS-CoV-2 but have no symptoms when they first test positive, but develop symptoms later on.","gene_count":0,"genotype_count":0,"name":"obsolete presymptomatic COVID-19 infection (obsolete MONDO:0100145)","termid":"MONDO:0100145","xrefs":{"Monarch":{"xref_id":"0100145"}}}


id: PBO:0047663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FKBP prolyl isomerase family member 15","termid":"PBO:0047663"}


id: GO:0043477
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, resulting in pigment accumulation.","definition_xrefs":["GOC:dph","GOC:jl","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pigment metabolic process involved in pigment accumulation","termid":"GO:0043475"},{"relation_name":"is_a","term_name":"pigment biosynthetic process","termid":"GO:0046148"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pigment biosynthetic process involved in pigment accumulation","synonyms":[{"name":"pigment biosynthetic process during pigment accumulation","type":"related"}],"termid":"GO:0043477"}


id: FYPO:0002143
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of reactive oxygen species (ROS) measured in a cell is lower than normal when the population in which the cell is found is in stationary phase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell","termid":"FYPO:0000991"},{"relation_name":"is_a","term_name":"altered cellular reactive oxygen species level","termid":"FYPO:0002142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular reactive oxygen species level in stationary phase","synonyms":[{"name":"decreased ROS accumulation in stationary phase","type":"related"},{"name":"decreased cellular ROS accumulation in stationary phase","type":"related"},{"name":"decreased cellular ROS level in stationary phase","type":"exact"},{"name":"decreased cellular reactive oxygen species accumulation in stationary phase","type":"related"},{"name":"reduced cellular ROS level in stationary phase","type":"exact"},{"name":"reduced cellular reactive oxygen species level in stationary phase","type":"exact"}],"termid":"FYPO:0002143"}


id: PBO:0026808
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_phosphorylation_during_cellular_response_to_micafungin","termid":"PBO:0026808"}


id: PBO:0040234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activating transcription factor 6","termid":"PBO:0040234"}


id: PBO:0048040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FSIP2 antisense RNA 1","termid":"PBO:0048040"}


id: MONDO:0700226
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Gastrointestinal disturbances, skin eruptions, or shock due to allergic reactions to allergens in food.","definition_xrefs":["MESH:D005512"],"direct_ancestors":[{"relation_name":"is_a","term_name":"allergic disease","termid":"MONDO:0005271"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"food allergy","secondary_identifiers":["SCTID:414285001","UMLS:C4554344","MEDGEN:1635115","EFO:1001890","ICD9:995.3","DOID:3044"],"synonyms":[{"name":"allergic disease from food material","type":"exact"},{"name":"allergy of food material","type":"exact"},{"name":"food hypersensitivity","type":"exact"},{"name":"food material allergic disease","type":"exact"}],"termid":"MONDO:0700226","xrefs":{"Monarch":{"xref_id":"0700226"}}}


id: PBO:0055033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2448","termid":"PBO:0055033"}


id: PBO:0039252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldehyde dehydrogenase 3 family member A2","termid":"PBO:0039252"}


id: MONDO:0020397
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Parachute tricuspid valve is a rare congenital heart malformation defined as an insertion of the chordal apparatus into a single papillary muscle or a muscle group, making a pathognomonic 'pear' shape sign in the four-chamber echocardiographic view with the atrium forming the larger base of the pear and the leaflets the apex. Isolated parachute tricuspid valve may be asymptomatic or present with symptoms of tricuspid stenosis (diastolic inspiratory murmur, pulsation of jugular veins, hepatomegaly, edema, epigastric discomfort, right atrial enlargement, right ventricular hypertrophy, electrocardiography abnormalities). It may also be associated with other heart malformations and present with symptoms of the complex of malformations.","definition_xrefs":["Orphanet:99056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital tricuspid malformation","termid":"MONDO:0020289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"parachute tricuspid valve","secondary_identifiers":["MEDGEN:576478","UMLS:C0344755","GARD:19624"],"termid":"MONDO:0020397","xrefs":{"Monarch":{"xref_id":"0020397"}}}


id: PBO:0085267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peroxisomal 2,4-dienoyl-CoA reductase; auxiliary enzyme of fatty acid beta-oxidation; homodimeric enzyme required for growth and sporulation on petroselineate medium; expression induced during late sporulation and in the presence of oleate","termid":"PBO:0085267"}


id: PBO:0028293
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-syntelic_kinetochore_attachment_during_mitosis","termid":"PBO:0028293"}


id: GO:0072265
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the metanephric capsule are generated and organized. The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal capsule morphogenesis","termid":"GO:0072128"},{"relation_name":"part_of","term_name":"metanephric capsule development","termid":"GO:0072213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric capsule morphogenesis","termid":"GO:0072265"}


id: GO:1900593
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of violaceol II.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound biosynthetic process","termid":"GO:0009713"},{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"},{"relation_name":"is_a","term_name":"violaceol II metabolic process","termid":"GO:1900591"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"violaceol II biosynthetic process","synonyms":[{"name":"violaceol II anabolism","type":"exact"},{"name":"violaceol II biosynthesis","type":"exact"},{"name":"violaceol II formation","type":"exact"},{"name":"violaceol II synthesis","type":"exact"}],"termid":"GO:1900593"}


id: GO:0004984
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with an odorant and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity in response to detection of smell.","definition_xrefs":["GOC:bf","PMID:19135896","GOC:dph","GOC:sart","PMID:21041441"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"olfactory receptor activity","synonyms":[{"name":"odorant receptor activity","type":"exact"}],"termid":"GO:0004984"}


id: PBO:0003142
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.3.1.35","termid":"PBO:0003142"}


id: PBO:0053799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1054","termid":"PBO:0053799"}


id: MOD:00135
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-asparagine residue and a glycine residue by an isopeptide bond with formation of N-(L-isoaspartyl)glycine and the release of ammonia.","definition_xrefs":["RESID:AA0126","ChEBI:21479","PubMed:1826288"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues with loss of ammonia","termid":"MOD:00946"},{"relation_name":"is_a","term_name":"N-(L-isoaspartyl)-glycine","termid":"MOD:01928"},{"relation_name":"is_a","term_name":"crosslinked L-asparagine residue","termid":"MOD:02042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-(L-isoaspartyl)-glycine (Asn)","synonyms":[{"name":"(2S)-2-amino-4-(carboxymethyl)amino-4-oxobutanoic acid","type":"exact"},{"name":"2-amino-N4-(carboxymethyl)-butanediamic acid","type":"exact"},{"name":"CROSSLNK Isoaspartyl glycine isopeptide (Asn-Gly)","type":"exact"},{"name":"CROSSLNK Isoaspartyl glycine isopeptide (Gly-Asn)","type":"exact"},{"name":"N-(L-isoaspartyl)-glycine","type":"exact"},{"name":"N-beta-aspartylglycine","type":"exact"},{"name":"N4-(carboxymethyl)-asparagine","type":"exact"},{"name":"XLNK-4Asp-NGly(Asn)","type":"exact"},{"name":"isoaspartyl glycine","type":"exact"}],"termid":"MOD:00135"}


id: GO:0003817
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage of component factor B (Arg-Lys) when in complex with C3b or with cobra venom factor (CVF).","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete complement factor D activity (obsolete GO:0003817)","synonyms":[{"name":"C3 convertase activator activity","type":"related"},{"name":"C3 proactivator convertase activity","type":"related"},{"name":"adipsin","type":"exact"},{"name":"complement factor D activity","type":"exact"},{"name":"factor D","type":"related"},{"name":"factor D (complement)","type":"related"},{"name":"properdin factor D esterase activity","type":"related"}],"termid":"GO:0003817"}


id: PBO:0043154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capicua transcriptional repressor pseudogene 22","termid":"PBO:0043154"}


id: SO:0000128
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is silenced by DNA modification.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"silenced_by_DNA_modification","termid":"SO:0000894"},{"relation_name":"is_a","term_name":"silenced_gene","termid":"SO:0000127"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_silenced_by_DNA_modification","synonyms":[{"name":"gene silenced by DNA modification","type":"exact"}],"termid":"SO:0000128"}


id: FYPO:0001024
data:
  {"alleles_by_uniquename":{"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_04284:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04284","name":"nup61delta","uniquename":"SJAG_04284:allele-1"},"SJAG_04332:allele-1":{"allele_type":"amino_acid_mutation","description":"I30T,T572P","gene_uniquename":"SJAG_04332","name":"cdc25-D9","uniquename":"SJAG_04332:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[121506],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000619"}],"single_locus_phenotype":[{"annotations":[121507],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000619"},{"annotations":[121501],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003738"},{"annotations":[121062],"is_not":false,"rel_names":["has_part","is_a"],"summary":null,"term":"FYPO:0007701"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell cycle phenotype that affects or involves the normal or abnormal occurrence of cell cycle arrest. In cell cycle arrest, progression through the cell cycle is halted during one of the normal phases (G1, S, G2, or M).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle phenotype","termid":"FYPO:0000631"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00871":null,"SJAG_04284":null,"SJAG_04332":null,"SJAG_04464":null},"genotype_count":4,"genotypes_by_uniquename":{"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]},"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"nup61delta":{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_04464","SJAG_00871"],"name":"cell cycle arrest phenotype","references_by_uniquename":{"PMID:25866389":null,"PMID:28954740":null},"single_locus_annotated_genes":["SJAG_04464","SJAG_04332","SJAG_04284"],"single_locus_genotype_uniquenames":["pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","nup61delta","cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"fission yeast cell cycle arrest phenotype","type":"exact"}],"termid":"FYPO:0001024","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0000619":null,"FYPO:0003738":null,"FYPO:0007701":null,"FYPO_EXT:0000001":null}}


id: PBO:0056190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member A3","termid":"PBO:0056190"}


id: GO:0102523
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-2-chloropropanoate + NADP = 2-chloroacrylate + NADPH + H+.","definition_xrefs":["GOC:pz","EC:1.3.1.103"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2-chloroacrylate reductase activity","secondary_identifiers":["MetaCyc:RXN-14536","RHEA:36591"],"termid":"GO:0102523"}


id: PBO:0058150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4445","termid":"PBO:0058150"}


id: MONDO:0800355
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"sleep disorder","termid":"MONDO:0100081"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"parasomnia, sleep terrors type","secondary_identifiers":["UMLS:C3151364","MEDGEN:462714"],"synonyms":[{"name":"PSMNST","type":"exact"}],"termid":"MONDO:0800355","xrefs":{"Monarch":{"xref_id":"0800355"}}}


id: PBO:0083313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps ORF COA1/YIL157C","termid":"PBO:0083313"}


id: PBO:0036454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABC1 kinase family ubiquinone biosynthesis ATPase Abc1/Coq8","termid":"PBO:0036454"}


id: PR:000024854
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- map2 gene or a 1:1 ortholog thereof. In Schizosaccharomyces pombe, proteolytic processing yeilds four peptides - two copies of P-factor 1 and one each of P-factor 2 and P-factor 3.","definition_xrefs":["PMID:8314086","PRO:MSY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P-factor precursor","pombase_gene_id":"SPCC1795.06","synonyms":[{"name":"map2","type":"exact"}],"termid":"PR:000024854"}


id: PBO:0087909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor for thiamine-regulated genes; required for expression of the two isoforms of pyruvate decarboxylase (PDC1 and PDC5) along with thiamine biosynthetic genes; binds a DNA sequence in the PDC5 promoter; mutant fails to grow on 2% glucose and thus is scored as inviable under standard conditions","termid":"PBO:0087909"}


id: MONDO:1010088
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A dermatomyositis characterized by the presence of anti-SAE autoantibodies.","definition_xrefs":["PMID:31279808"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dermatomyositis","termid":"MONDO:0016367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0005093"],"is_obsolete":false,"name":"anti-SAE dermatomyositis","synonyms":[{"name":"anti-small ubiquitin-like modifier activating enzyme dermatomyositis","type":"exact"}],"termid":"MONDO:1010088","xrefs":{"Monarch":{"xref_id":"1010088"}}}


id: GO:0030353
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Interacts with the fibroblast growth factor receptor to reduce the action of another ligand, the agonist.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor binding","termid":"GO:0005104"},{"relation_name":"is_a","term_name":"receptor antagonist activity","termid":"GO:0048019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0140678","GO:0098772","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"fibroblast growth factor receptor antagonist activity","synonyms":[{"name":"FGF receptor antagonist activity","type":"exact"},{"name":"FGFR antagonist activity","type":"exact"}],"termid":"GO:0030353"}


id: MONDO:0859572
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac valvular defect","termid":"MONDO:0031323"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cardiac valvular dysplasia 2","secondary_identifiers":["UMLS:C5774226","OMIM:620067","MEDGEN:1823999"],"termid":"MONDO:0859572","xrefs":{"Monarch":{"xref_id":"0859572"}}}


id: PBO:0028296
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_level_of_stress_responsive_gene_mRNA_during_vegetative_growth","termid":"PBO:0028296"}


id: PATO:0002259
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's being located near in space in relation to another entity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adjacent to","secondary_identifiers":["PATO:0001771"],"synonyms":[{"name":"close to","type":"exact"},{"name":"near to","type":"exact"},{"name":"vicinity of","type":"exact"}],"termid":"PATO:0002259"}


id: GO:0047591
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-hydroxypentanoate + acetyl-CoA = 5-hydroxy-pentanoyl-CoA + acetate.","definition_xrefs":["EC:2.8.3.14","RHEA:23496"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-transferase activity","termid":"GO:0008410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016782","GO:0016740"],"is_obsolete":false,"name":"5-hydroxypentanoate CoA-transferase activity","secondary_identifiers":["KEGG_REACTION:R04057","MetaCyc:5-HYDROXYPENTANOATE-COA-TRANSFERASE-RXN"],"synonyms":[{"name":"5-hydroxyvalerate CoA-transferase activity","type":"related"},{"name":"5-hydroxyvalerate coenzyme A transferase activity","type":"related"},{"name":"acetyl-CoA:5-hydroxypentanoate CoA-transferase activity","type":"related"}],"termid":"GO:0047591"}


id: PBO:0045632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 44 (pseudogene)","termid":"PBO:0045632"}


id: GO:0140876
data:
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id: GO:2001279
data:
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id: PBO:0083343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps the verified gene CMP2/YML057W","termid":"PBO:0083343"}


id: FYPO:0004247
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the fungal-type vacuole is normal (i.e. indistinguishable from wild type)..","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal vacuolar morphology during vegetative growth","synonyms":[{"name":"normal vacuolar morphology during mitotic cell cycle","type":"related"},{"name":"normal vacuole morphology during vegetative growth","type":"exact"}],"termid":"FYPO:0004247"}


id: GO:0061756
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of a leukocyte to vascular endothelial cell via adhesion molecules.","definition_xrefs":["GOC:BHF","PMID:23897866","GOC:bc","GOC:BHF_miRNA","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte cell-cell adhesion","termid":"GO:0007159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"leukocyte adhesion to vascular endothelial cell","termid":"GO:0061756"}


id: PBO:0066328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of calcineurin 2","termid":"PBO:0066328"}


id: GO:0006844
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of acyl carnitine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Acyl carnitine is the condensation product of a carboxylic acid and carnitine and is the transport form for a fatty acid crossing the mitochondrial membrane.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete acyl carnitine transport (obsolete GO:0006844)","termid":"GO:0006844"}


id: GO:0062202
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: peregrinol diphosphate = diphosphate + labd-13(16),14-diene-9-ol.","definition_xrefs":["PMID:29315936","RHEA:62184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"Labd-13(16),14-diene-9-ol synthase activity","termid":"GO:0062202"}


id: GO:1990835
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The appearance of an insulin-like growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["PMID:21993393"],"gene_count":0,"genotype_count":0,"name":"obsolete insulin-like growth factor production (obsolete GO:1990835)","synonyms":[{"name":"IGF production","type":"related"}],"termid":"GO:1990835"}


id: SO:0000104
data:
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id: PBO:0040519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AXL receptor tyrosine kinase","termid":"PBO:0040519"}


id: PBO:0029323
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H2A_phosphorylation_at_rDNA_during_mitotic_S_phase","termid":"PBO:0029323"}


id: PBO:0085071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nonhistone component of centromeric chromatin; binds to histone H3 variant, Cse4p, and recruits it to centromeres; involved in the assembly and maintenance of Cse4-H4 at centromeres; required for kinetochore assembly and G2/M progression; may protect Cse4p from ubiquitination; homolog of mammalian HJURP","termid":"PBO:0085071"}


id: PBO:0028529
data:
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id: PBO:0071382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L30 pseudogene 5","termid":"PBO:0071382"}


id: PR:Q09775
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent RNA helicase DDX52 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00269","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase rok1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22F3.08c","secondary_identifiers":["UniProtKB:Q09775"],"synonyms":[{"name":"Spom972h-DDX52","type":"exact"}],"termid":"PR:Q09775"}


id: GO:0005905
data:
  {"annotated_genes":["SJAG_04517","SJAG_01748","SJAG_04565","SJAG_02282","SJAG_04609","SJAG_00104","SJAG_01167","SJAG_02805","SJAG_00800"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[58994,66544,75311,114621,114835],"is_not":false,"summary":null,"term":"GO:0005905"},{"annotations":[110149,76140,79959,58581],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030122"}]},"cv_name":"cellular_component","definition":"A part of the endomembrane system in the form of an invagination of a membrane upon which a clathrin coat forms, and that can be converted by vesicle budding into a clathrin-coated vesicle. Coated pits form on the plasma membrane, where they are involved in receptor-mediated selective transport of many proteins and other macromolecules across the cell membrane, in the trans-Golgi network, and on some endosomes.","definition_xrefs":["PMID:17284835","NIF_Subcellular:sao1969557946","GOC:mah","ISBN:0198506732","PMID:10559856"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane","termid":"GO:0016020"},{"relation_name":"part_of","term_name":"endomembrane system","termid":"GO:0012505"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00104":null,"SJAG_00800":null,"SJAG_01167":null,"SJAG_01748":null,"SJAG_02282":null,"SJAG_02805":null,"SJAG_04517":null,"SJAG_04565":null,"SJAG_04609":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"clathrin-coated pit","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null},"synonyms":[{"name":"coated pit","type":"exact"}],"termid":"GO:0005905","terms_by_termid":{"GO:0005905":null,"GO:0030122":null}}


id: MONDO:0030031
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"lissencephaly spectrum disorders","termid":"MONDO:0018838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"lissencephaly 10","secondary_identifiers":["OMIM:618873","UMLS:C5394354","DOID:0112229","MEDGEN:1719546"],"synonyms":[{"name":"LIS10","type":"exact"},{"name":"LISSENCEPHALY 10","type":"exact"},{"name":"lissencephaly 10","type":"exact"}],"termid":"MONDO:0030031","xrefs":{"Monarch":{"xref_id":"0030031"}}}


id: PBO:0074609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 14A","termid":"PBO:0074609"}


id: PBO:0083984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glutamine-rich cytoplasmic cochaperone; serves as a scaffold bringing together Get4, Get5p, and other TRC complex members that are required to mediate posttranslational insertion of tail-anchored proteins into the ER membrane; interacts with the prion domain of Sup35p; amyloid sensor; plays a role in targeting chaperones to prion aggregates; similar to human cochaperone SGT; forms cytoplasmic foci upon DNA replication stress","termid":"PBO:0083984"}


id: PBO:0083853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain both S1 and KH RNA binding domains; mutations in the human homolog, EXOSC3, cause pontocerebellar hypoplasia with motor neuron degeneration","termid":"PBO:0083853"}


id: PBO:0064424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patatin like phospholipase domain containing 2","termid":"PBO:0064424"}


id: PR:Q9HGL8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl4301 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9HGL8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L43-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC800.04c","synonyms":[{"name":"L37A (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rpl4301","type":"exact"}],"termid":"PR:Q9HGL8"}


id: GO:2001138
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phospholipid transport.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipid transport","termid":"GO:0032368"},{"relation_name":"regulates","term_name":"phospholipid transport","termid":"GO:0015914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of phospholipid transport","termid":"GO:2001138"}


id: MONDO:1011425
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ehlers-Danlos syndrome that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental defect during embryogenesis, non-human animal","termid":"MONDO:1011310"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"syndromic disease, non-human animal","termid":"MONDO:1011360"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ehlers-Danlos syndrome, non-human animal","secondary_identifiers":["OMIA:000327"],"termid":"MONDO:1011425","xrefs":{"Monarch":{"xref_id":"1011425"}}}


id: PBO:0081693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 615","termid":"PBO:0081693"}


id: PBO:0084213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Homodimeric protein that is packaged into COPII vesicles; cycles between the ER and Golgi; involved in secretory transport but not directly required for aspects of transport assayed in vitro; may influence membrane composition","termid":"PBO:0084213"}


id: FYPO:0007466
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which methylation of lysine at position 9 of histone H3 is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone methylation","termid":"FYPO:0006870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002274","FYPO:0000002","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"abnormal histone H3-K9 methylation","synonyms":[{"name":"abnormal histone H3 K9 methylation","type":"exact"},{"name":"abnormal histone H3K9me","type":"exact"},{"name":"abnormal histone lysine H3 K9 methylation","type":"exact"}],"termid":"FYPO:0007466"}


id: MONDO:0100158
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A spectrum of presentations resulting from biallelic protein-altering variation in CHRNG. Inactivation of the receptor during early development leads to prenatal hypo-akinesia; subsequent phenotypes are a consequence of this hypo-akinesia and are thought to be dependent upon timing and severity of the anomaly at the neuromuscular junction. A range of phenotypes varying in severity (including both lethal and non-lethal presentations) have been reported, but typically include joint contractures, pterygia, dysmorphic features, vertebral and thoracic anomalies, and additional variable abnormalities. There are no clear genotype-phenotype correlations between the lethal and non-lethal presentations of this spectrum; both inter- and intra-familial variability have been reported, with the same variants being observed in both lethal and non-lethal cases.","definition_xrefs":["PMID:30868735","PMID:22167768","PMID:16826531","PMID:16826520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple pterygium syndrome","termid":"MONDO:0017415"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHRNG-associated hypo-akinesia disorder of prenatal onset","termid":"MONDO:0100158","xrefs":{"Monarch":{"xref_id":"0100158"}}}


id: MOD:00911
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that modifies an L-leucine residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by amino acid modified","termid":"MOD:01157"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified L-leucine residue","synonyms":[{"name":"ModLeu","type":"exact"}],"termid":"MOD:00911"}


id: PBO:0047673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"filaggrin 2","termid":"PBO:0047673"}


id: PR:Q04800
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An NADPH oxidase 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02342","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferric reductase transmembrane component 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1683.09c","secondary_identifiers":["UniProtKB:Q04800"],"synonyms":[{"name":"Spom972h-NOX1","type":"exact"},{"name":"ferric-chelate reductase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q04800"}


id: GO:0031797
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 2 metabotropic GABA receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled GABA receptor binding","termid":"GO:0031795"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"type 2 metabotropic GABA receptor binding","synonyms":[{"name":"type 2 metabotropic GABA receptor ligand","type":"narrow"}],"termid":"GO:0031797"}


id: FYPO:0005085
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at small nuclear RNA (snRNA) genes is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:21151114","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin at ncRNA gene","termid":"FYPO:0005083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000138","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to chromatin at snRNA gene","synonyms":[{"name":"normal protein localisation to chromatin at snRNA gene","type":"exact"},{"name":"normal protein localization to chromatin at snRNA gene during mitotic cell cycle","type":"related"},{"name":"normal protein localization to chromatin at snRNA gene during vegetative growth","type":"exact"}],"termid":"FYPO:0005085"}


id: PBO:0017943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar protein Nop52 family Rrp1 (predicted)","termid":"PBO:0017943"}


id: GO:0070593
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which dendrites recognize and avoid contact with sister dendrites from the same cell.","definition_xrefs":["GOC:sart","PMID:17482551"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron recognition","termid":"GO:0008038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dendrite self-avoidance","synonyms":[{"name":"dendrite repulsion","type":"exact"}],"termid":"GO:0070593"}


id: GO:1904199
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of regulation of vascular smooth muscle cell membrane depolarization.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:20826763"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of membrane depolarization","termid":"GO:1904181"},{"relation_name":"positively_regulates","term_name":"regulation of vascular associated smooth muscle cell membrane depolarization","termid":"GO:1990736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of regulation of vascular associated smooth muscle cell membrane depolarization","synonyms":[{"name":"activation of regulation of vascular smooth muscle cell membrane depolarization","type":"narrow"},{"name":"positive regulation of regulation of vascular smooth muscle cell membrane depolarization","type":"exact"},{"name":"up regulation of regulation of vascular smooth muscle cell membrane depolarization","type":"exact"},{"name":"up-regulation of regulation of vascular smooth muscle cell membrane depolarization","type":"exact"},{"name":"upregulation of regulation of vascular smooth muscle cell membrane depolarization","type":"exact"}],"termid":"GO:1904199"}


id: GO:0071126
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaV-beta6 integrin complex bound to osteopontin.","definition_xrefs":["PMID:16005200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"alphaV-beta6 integrin-osteopontin complex","synonyms":[{"name":"ITGAV-ITGB6-SPP1 complex","type":"narrow"}],"termid":"GO:0071126"}


id: GO:0019681
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pathways by which acetyl-CoA is processed and converted into alpha-ketoglutarate (2-oxoglutarate); methanogenic archaea use these pathways to assimilate acetyl-CoA into the cell.","definition_xrefs":["MetaCyc:P22-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate metabolic process","termid":"GO:0006103"},{"relation_name":"is_a","term_name":"acetyl-CoA catabolic process","termid":"GO:0046356"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006790","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"acetyl-CoA assimilation pathway","synonyms":[{"name":"acetyl-CoA catabolic process to 2-ketoglutarate","type":"exact"},{"name":"acetyl-CoA catabolic process to 2-oxoglutarate","type":"exact"},{"name":"acetyl-CoA catabolic process to alpha-ketoglutarate","type":"exact"},{"name":"acetyl-CoA catabolic process to alpha-oxoglutarate","type":"exact"},{"name":"acetyl-CoA catabolism to 2-ketoglutarate","type":"exact"},{"name":"acetyl-CoA catabolism to 2-oxoglutarate","type":"exact"},{"name":"acetyl-CoA catabolism to alpha-ketoglutarate","type":"exact"},{"name":"acetyl-CoA catabolism to alpha-oxoglutarate","type":"exact"}],"termid":"GO:0019681"}


id: PBO:0017008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"box H/ACA small nucleolar RNA snR42","termid":"PBO:0017008"}


id: GO:0046640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of alpha-beta T cell proliferation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell proliferation","termid":"GO:0042129"},{"relation_name":"is_a","term_name":"regulation of alpha-beta T cell activation","termid":"GO:0046634"},{"relation_name":"regulates","term_name":"alpha-beta T cell proliferation","termid":"GO:0046633"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of alpha-beta T cell proliferation","synonyms":[{"name":"regulation of alpha-beta T lymphocyte proliferation","type":"exact"},{"name":"regulation of alpha-beta T-cell proliferation","type":"exact"},{"name":"regulation of alpha-beta T-lymphocyte proliferation","type":"exact"}],"termid":"GO:0046640"}


id: PBO:0053761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1003","termid":"PBO:0053761"}


id: FYPO:0003315
data:
  {"alleles_by_uniquename":{"SJAG_04703:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04703","name":"for3delta","uniquename":"SJAG_04703:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121250],"is_not":false,"summary":null,"term":"FYPO:0003315"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the cell does not contain detectable actin cables.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cables","termid":"FYPO:0002435"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04703":null},"genotype_count":1,"genotypes_by_uniquename":{"for3delta":{"display_name":"for3delta","display_uniquename":"for3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04703:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0004803","FYPO:0001320"],"is_obsolete":false,"name":"actin cables absent from cell","references_by_uniquename":{"PMID:30726171":null},"single_locus_annotated_genes":["SJAG_04703"],"single_locus_genotype_uniquenames":["for3delta"],"synonyms":[{"name":"absent actin cables","type":"exact"},{"name":"actin cables absent from cell during mitotic cell cycle","type":"related"},{"name":"actin cables absent from cell during vegetative growth","type":"exact"},{"name":"formin-nucleated actin cables absent from cell","type":"exact"}],"termid":"FYPO:0003315","terms_by_termid":{"FYPO:0003315":null}}


id: MONDO:1011634
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"self-mutilation syndrome, non-human animal","secondary_identifiers":["OMIA:001161"],"termid":"MONDO:1011634","xrefs":{"Monarch":{"xref_id":"1011634"}}}


id: PBO:0052852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 4-8","termid":"PBO:0052852"}


id: MONDO:0041095
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An malignant otitis externa caused by infection with Pseudomonas aeruginosa.","definition_xrefs":["MONDO:patterns/specific_infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant otitis externa","termid":"MONDO:0001050"},{"relation_name":"is_a","term_name":"Pseudomonas aeruginosa infectious disease","termid":"MONDO:0040732"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malignant otitis externa caused by Pseudomonas aeruginosa","secondary_identifiers":["MEDGEN:583067","SCTID:232230009","UMLS:C0395818"],"synonyms":[{"name":"Pseudomonas aeruginosa caused malignant otitis externa","type":"exact"},{"name":"Pseudomonas aeruginosa malignant otitis externa","type":"exact"},{"name":"malignant otitis externa caused by Pseudomonas aeruginosa","type":"exact"},{"name":"malignant otitis externa due to Pseudomonas aeruginosa","type":"exact"}],"termid":"MONDO:0041095","xrefs":{"Monarch":{"xref_id":"0041095"}}}


id: PBO:0053716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 926","termid":"PBO:0053716"}


id: GO:0005565
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial tRNA (obsolete GO:0005565)","synonyms":[{"name":"mitochondrial tRNA","type":"exact"}],"termid":"GO:0005565"}


id: PBO:0003945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF2 gamma subunit (predicted)","termid":"PBO:0003945"}


id: GO:0044258
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown into fatty acids and monoglycerides of lipids in the small intestine. Lipids are broken down by lipases released by the pancreas.","definition_xrefs":["PMID:7018485","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid catabolic process","termid":"GO:0016042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"intestinal lipid catabolic process","synonyms":[{"name":"intestinal lipid breakdown","type":"exact"},{"name":"intestinal lipid catabolism","type":"exact"},{"name":"intestinal lipid degradation","type":"exact"}],"termid":"GO:0044258"}


id: PBO:0073469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SFXN4 pseudogene 1","termid":"PBO:0073469"}


id: PBO:0056912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane integral NOTCH2 associated receptor 1","termid":"PBO:0056912"}


id: MONDO:0033717
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare hereditary ataxia characterized by delayed motor milestones in early infancy, hypotonia, ataxic gait, intention tremor, nystagmus, dysarthric speech, and variable learning difficulties. Neuroimaging shows a mixed picture of cerebellar hypoplasia and degeneration, with an almost absent inferior lobule and thinning of the folia of the vermis. In addition, cisterna magna and fourth ventricle are enlarged with relative sparing of the brain stem volume.","definition_xrefs":["Orphanet:512260"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive congenital cerebellar ataxia","termid":"MONDO:0020043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0006025"],"is_obsolete":false,"name":"congenital cerebellar ataxia due to RNU12 mutation","secondary_identifiers":["UMLS:C5567894","MEDGEN:1799317","GARD:22075"],"termid":"MONDO:0033717","xrefs":{"Monarch":{"xref_id":"0033717"}}}


id: RO:0002433
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"p contributes to morphology of w if and only if a change in the morphology of p entails a change in the morphology of w. Examples: every skull contributes to morphology of the head which it is a part of. Counter-example: nuclei do not generally contribute to the morphology of the cell they are part of, as they are buffered by cytoplasm.","direct_ancestors":[{"relation_name":"is_a","term_name":"overlaps","termid":"RO:0002131"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contributes_to_morphology_of","termid":"RO:0002433"}


id: PBO:0056244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"magnesium transporter 1","termid":"PBO:0056244"}


id: GO:0018553
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3-(2,3-dihydroxyphenyl)propionate + O2 = 2-hydroxy-6-keto-nona-2,4-dienedioate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-(2,3-dihydroxyphenyl)propionate 1,2-dioxygenase activity (obsolete GO:0018553)","termid":"GO:0018553"}


id: GO:0016771
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the transfer of a nitrogenous group, other than amino, amidino or oxime, from one compound (donor) to another (acceptor).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete transferase activity, transferring other nitrogenous groups (obsolete GO:0016771)","synonyms":[{"name":"transferase activity, transferring other nitrogenous groups","type":"exact"}],"termid":"GO:0016771"}


id: MONDO:0013801
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any early infantile epileptic encephalopathy in which the cause of the disease is a mutation in the SCN8A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"undetermined early-onset epileptic encephalopathy","termid":"MONDO:0018614"},{"relation_name":"is_a","term_name":"neonatal-onset developmental and epileptic encephalopathy","termid":"MONDO:0100455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027","MONDO:0005066","MONDO:0004736","MONDO:0700092"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy, 13","secondary_identifiers":["SCTID:765170001","DOID:0080445","UMLS:C3281191","GARD:13085","MEDGEN:482821","OMIM:614558"],"synonyms":[{"name":"DEE13","type":"exact"},{"name":"EIEE13","type":"exact"},{"name":"SCN8A early infantile epileptic encephalopathy","type":"exact"},{"name":"SCN8A encephalopathy","type":"related"},{"name":"SCN8A epilepsy","type":"related"},{"name":"developmental and epileptic encephalopathy 13","type":"exact"},{"name":"early infantile epileptic encephalopathy caused by mutation in SCN8A","type":"exact"},{"name":"early infantile epileptic encephalopathy-13","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 13","type":"exact"},{"name":"epileptic encephalopathy, early infantile, type 13","type":"exact"}],"termid":"MONDO:0013801","xrefs":{"Monarch":{"xref_id":"0013801"}}}


id: MONDO:0005421
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete infantile hypertrophic pyloric stenosis (obsolete MONDO:0005421)","termid":"MONDO:0005421","xrefs":{"Monarch":{"xref_id":"0005421"}}}


id: GO:2000749
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of rDNA heterochromatin formation.","definition_xrefs":["PMID:10899127"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of heterochromatin formation","termid":"GO:0031453"},{"relation_name":"is_a","term_name":"regulation of rDNA heterochromatin formation","termid":"GO:0061187"},{"relation_name":"positively_regulates","term_name":"rDNA heterochromatin formation","termid":"GO:0000183"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0006325"},{"rel_name":"positively_regulates","termid":"GO:0006325"}],"interesting_parent_ids":["GO:0010467","GO:0006325","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of rDNA heterochromatin formation","synonyms":[{"name":"positive regulation of chromatin silencing at rDNA","type":"broad"},{"name":"positive regulation of chromatin silencing at ribosomal DNA","type":"broad"},{"name":"positive regulation of heterochromatic silencing at rDNA","type":"broad"},{"name":"positive regulation of rDNA chromatin silencing","type":"broad"},{"name":"positive regulation of rDNA heterochromatin assembly","type":"exact"},{"name":"positive regulation of ribosomal DNA heterochromatin assembly","type":"exact"}],"termid":"GO:2000749"}


id: PBO:0038808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase domain 12","termid":"PBO:0038808"}


id: GO:0019044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The perpetuation of a latent state, generally by repressing the viruses own lytic genes expression and ensuring expression of viral genes which function to keep the viral genome from being detected by the host defense mechanisms.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"},{"relation_name":"part_of","term_name":"viral latency","termid":"GO:0019042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of viral latency","secondary_identifiers":["GO:0075716","GO:0032360"],"synonyms":[{"name":"latent virus maintenance","type":"exact"},{"name":"prophage maintenance","type":"exact"},{"name":"provirus maintenance","type":"exact"}],"termid":"GO:0019044"}


id: PBO:0044300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b5 type A pseudogene 3","termid":"PBO:0044300"}


id: GO:0060318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Erythrocyte differentiation which occurs as part of the process of definitive hemopoiesis.","definition_xrefs":["GOC:add","GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"erythrocyte differentiation","termid":"GO:0030218"},{"relation_name":"part_of","term_name":"definitive hemopoiesis","termid":"GO:0060216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"definitive erythrocyte differentiation","synonyms":[{"name":"definitive RBC differentiation","type":"exact"},{"name":"definitive erythropoiesis","type":"exact"},{"name":"definitive red blood cell differentiation","type":"exact"}],"termid":"GO:0060318"}


id: PBO:0049902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hes family bHLH transcription factor 3","termid":"PBO:0049902"}


id: GO:0090275
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, extent of the regulated release of somatostatin from secretory granules in the D cells of the pancreas.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of somatostatin secretion","termid":"GO:0090273"},{"relation_name":"is_a","term_name":"negative regulation of peptide hormone secretion","termid":"GO:0090278"},{"relation_name":"negatively_regulates","term_name":"somatostatin secretion","termid":"GO:0070253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of somatostatin secretion","termid":"GO:0090275"}


id: PBO:0062257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily D member 13","termid":"PBO:0062257"}


id: GO:0031409
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a pigment, a general or particular coloring matter in living organisms, e.g. melanin.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding","termid":"GO:0005488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"pigment binding","termid":"GO:0031409"}


id: PBO:0052080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"katanin regulatory subunit B1 like 1 pseudogene 5","termid":"PBO:0052080"}


id: GO:1905464
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of DNA duplex unwinding.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:26503245"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of DNA duplex unwinding (obsolete GO:1905464)","synonyms":[{"name":"activation of DNA duplex unwinding","type":"narrow"},{"name":"activation of DNA unwinding","type":"narrow"},{"name":"activation of duplex DNA melting","type":"narrow"},{"name":"positive regulation of DNA unwinding","type":"exact"},{"name":"positive regulation of duplex DNA melting","type":"exact"},{"name":"up regulation of DNA duplex unwinding","type":"exact"},{"name":"up regulation of DNA unwinding","type":"exact"},{"name":"up regulation of duplex DNA melting","type":"exact"},{"name":"up-regulation of DNA duplex unwinding","type":"exact"},{"name":"up-regulation of DNA unwinding","type":"exact"},{"name":"up-regulation of duplex DNA melting","type":"exact"},{"name":"upregulation of DNA duplex unwinding","type":"exact"},{"name":"upregulation of DNA unwinding","type":"exact"},{"name":"upregulation of duplex DNA melting","type":"exact"}],"termid":"GO:1905464"}


id: GO:0046798
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multimeric ring of proteins through which the DNA enters and exits the viral capsid.","definition_xrefs":["PMID:11602732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"viral capsid","termid":"GO:0019028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"viral portal complex","termid":"GO:0046798"}


id: PR:Q4ZGE1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC8C9.19 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q4ZGE1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0618 protein C8C9.19 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC8C9.19","synonyms":[{"name":"Spom972h-SPAC8C9.19","type":"exact"}],"termid":"PR:Q4ZGE1"}


id: MONDO:0010751
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unique green phenomenon","secondary_identifiers":["UMLS:C1839116","OMIM:314380","MEDGEN:326816"],"synonyms":[{"name":"unique green phenomenon","type":"exact"}],"termid":"MONDO:0010751","xrefs":{"Monarch":{"xref_id":"0010751"}}}


id: MONDO:0045004
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease or disorder that involves the skeletal ligament.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal system disorder","termid":"MONDO:0005172"},{"relation_name":"is_a","term_name":"ligament disorder","termid":"MONDO:0045044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"skeletal ligament disorder","synonyms":[{"name":"disease of skeletal ligament","type":"exact"},{"name":"disease or disorder of skeletal ligament","type":"exact"},{"name":"disorder of skeletal ligament","type":"exact"},{"name":"skeletal ligament disease or disorder","type":"exact"}],"termid":"MONDO:0045004","xrefs":{"Monarch":{"xref_id":"0045004"}}}


id: FYPO:0005582
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the cell contains monoacylglycerol phosphates (also called lysophospholipids) that have normal length fatty acid chain residues.","definition_xrefs":["PomBase:mah","PMID:27053105"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative phenotype","termid":"FYPO:0001312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal monoacylglycerol phosphate chain length","synonyms":[{"name":"normal lysophospholipid chain length","type":"exact"},{"name":"normal lysophospholipid fatty acid chain length","type":"exact"},{"name":"normal monoacylglycerol phosphate chain length during mitotic cell cycle","type":"related"},{"name":"normal monoacylglycerol phosphate chain length during vegetative growth","type":"exact"},{"name":"normal monoacylglycerol phosphate fatty acid chain length","type":"exact"}],"termid":"FYPO:0005582"}


id: PBO:0029011
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_chromosome_during_vegetative_growth","termid":"PBO:0029011"}


id: MONDO:0017520
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"symbrachydactyly of hands and feet","termid":"MONDO:0015516"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"symbrachydactyly of hand and foot, bilateral","secondary_identifiers":["UMLS:C2919807","MEDGEN:754111","Orphanet:295138"],"termid":"MONDO:0017520","xrefs":{"Monarch":{"xref_id":"0017520"}}}


id: MONDO:0005995
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infestation with nematode worms of the genus trichostrongylus. Humans become infected by swallowing larvae, usually with contaminated food or drink, although the larvae may penetrate human skin.","definition_xrefs":["MESH:D014253-modified"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Rhabditida infectious disease","termid":"MONDO:0005943"},{"relation_name":"is_a","term_name":"trichostrongyloidiasis","termid":"MONDO:0005994"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trichostrongylosis","secondary_identifiers":["MEDGEN:11908","DOID:1254","ICD10CM:B81.2","MESH:D014253","SCTID:33710003","ICD9:127.6","EFO:0007523","UMLS:C0040948"],"synonyms":[{"name":"Trichostrongyliasis","type":"exact"},{"name":"Trichostrongylus caused disease or disorder","type":"exact"},{"name":"Trichostrongylus disease or disorder","type":"exact"},{"name":"Trichostrongylus infectious disease","type":"exact"},{"name":"infection by Trichostrongylus","type":"exact"},{"name":"infection by Trichostrongylus species","type":"exact"}],"termid":"MONDO:0005995","xrefs":{"Monarch":{"xref_id":"0005995"}}}


id: PBO:0091296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi BAR domain protein","termid":"PBO:0091296"}


id: GO:2000274
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of epithelial cell migration, open tracheal system.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial cell migration","termid":"GO:0010632"},{"relation_name":"regulates","term_name":"epithelial cell migration, open tracheal system","termid":"GO:0007427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of epithelial cell migration, open tracheal system","synonyms":[{"name":"regulation of tracheal cell migration","type":"related"},{"name":"regulation of tracheal epithelial cell migration","type":"related"}],"termid":"GO:2000274"}


id: PBO:0071454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 60","termid":"PBO:0071454"}


id: GO:1901711
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of homoserine biosynthetic process.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"regulation of homoserine biosynthetic process","termid":"GO:1901710"},{"relation_name":"is_a","term_name":"negative regulation of amino acid biosynthetic process","termid":"GO:2000283"},{"relation_name":"negatively_regulates","term_name":"homoserine biosynthetic process","termid":"GO:0009090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006520"},{"rel_name":"regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"negative regulation of homoserine biosynthetic process","synonyms":[{"name":"down regulation of homoserine anabolism","type":"exact"},{"name":"down regulation of homoserine biosynthesis","type":"exact"},{"name":"down regulation of homoserine biosynthetic process","type":"exact"},{"name":"down regulation of homoserine formation","type":"exact"},{"name":"down regulation of homoserine synthesis","type":"exact"},{"name":"down-regulation of homoserine anabolism","type":"exact"},{"name":"down-regulation of homoserine biosynthesis","type":"exact"},{"name":"down-regulation of homoserine biosynthetic process","type":"exact"},{"name":"down-regulation of homoserine formation","type":"exact"},{"name":"down-regulation of homoserine synthesis","type":"exact"},{"name":"downregulation of homoserine anabolism","type":"exact"},{"name":"downregulation of homoserine biosynthesis","type":"exact"},{"name":"downregulation of homoserine biosynthetic process","type":"exact"},{"name":"downregulation of homoserine formation","type":"exact"},{"name":"downregulation of homoserine synthesis","type":"exact"},{"name":"inhibition of homoserine anabolism","type":"exact"},{"name":"inhibition of homoserine biosynthesis","type":"exact"},{"name":"inhibition of homoserine biosynthetic process","type":"narrow"},{"name":"inhibition of homoserine formation","type":"exact"},{"name":"inhibition of homoserine synthesis","type":"exact"},{"name":"negative regulation of homoserine anabolism","type":"exact"},{"name":"negative regulation of homoserine biosynthesis","type":"exact"},{"name":"negative regulation of homoserine formation","type":"exact"},{"name":"negative regulation of homoserine synthesis","type":"exact"}],"termid":"GO:1901711"}


id: PBO:0052291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KHDC1 antisense RNA 1","termid":"PBO:0052291"}


id: PBO:0082905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cystathionine gamma-lyase; catalyzes one of the two reactions involved in the transsulfuration pathway that yields cysteine from homocysteine with the intermediary formation of cystathionine; protein abundance increases in response to DNA replication stress","termid":"PBO:0082905"}


id: PBO:0057431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 550b-1","termid":"PBO:0057431"}


id: PBO:0084903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial tryptophanyl-tRNA synthetase","termid":"PBO:0084903"}


id: PBO:0080626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 73","termid":"PBO:0080626"}


id: MOD:02030
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively specifies the boundary conformation of two adjacent source amino acid residues, the second (C-term side) being a L-proline, where the carbonyl group of the amide bond of the N-side of the L-proline is positioned such that the organodiyl group is in the trans orientation (omega=180)","definition_xrefs":["PubMed:5485910","ChEBI:83834","PubMed:15735342","PubMed:24116866","PubMed:15311922"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trans-peptidyl-L-proline","termid":"MOD:02030"}


id: PBO:0046767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome component 7","termid":"PBO:0046767"}


id: PBO:0068887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 128, pseudogene","termid":"PBO:0068887"}


id: GO:0031294
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of providing, via surface-bound receptor-ligand pairs, a second, antigen-independent, signal in addition to that provided by the B- or T cell receptor to augment B- or T cell activation.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system process","termid":"GO:0002376"},{"relation_name":"is_a","term_name":"positive regulation of lymphocyte activation","termid":"GO:0051251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lymphocyte costimulation","synonyms":[{"name":"lymphocyte co-stimulation","type":"exact"}],"termid":"GO:0031294"}


id: PBO:0071274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL24 pseudogene 8","termid":"PBO:0071274"}


id: GO:0160079
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with glycine and transmitting the signal across the membrane by changing the activity of intracellular G protein signaling.","definition_xrefs":["PMID:36996198"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled neurotransmitter receptor activity","termid":"GO:0099528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"G protein-coupled glycine receptor activity","synonyms":[{"name":"mGlyR","type":"exact"},{"name":"metabotropic glycine receptor activity","type":"exact"}],"termid":"GO:0160079"}


id: MONDO:0017079
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital abnormality in which the meninges protrude through a defect in the cranium.","definition_xrefs":["NCIT:C124517"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meningocele","termid":"MONDO:0001147"},{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"},{"relation_name":"is_a","term_name":"cephalocele","termid":"MONDO:0017078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"meningoencephalocele","secondary_identifiers":["GARD:20968","ICD10CM:Q01.2","NANDO:2200813","ICD10CM:Q01.0","MEDGEN:82743","Orphanet:268820","SCTID:52330001","UMLS:C0266456"],"synonyms":[{"name":"brain meninx cephalocele (disease)","type":"exact"},{"name":"cephalocele (disease) of brain meninx","type":"exact"},{"name":"cranial meningocele","type":"related"},{"name":"encephalomeningocele","type":"related"},{"name":"meningoencephalocele","type":"exact"}],"termid":"MONDO:0017079","xrefs":{"Monarch":{"xref_id":"0017079"}}}


id: FYPO:0006819
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cells elongate at a normal (i.e. indistinguishable from wild type) rate during the vegetative growth phase of the life cycle. Cell growth is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.","definition_xrefs":["GO:0016049","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell growth","termid":"FYPO:0002062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal vegetative cell growth rate","termid":"FYPO:0006819"}


id: GO:0030874
data:
  {"annotated_genes":["SJAG_02723","SJAG_03923","SJAG_03905","SJAG_01005","SJAG_05237","SJAG_04210","SJAG_03603","SJAG_02879","SJAG_01509","SJAG_05180"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[94135,97099,100333,104702,108454,109602],"is_not":false,"summary":null,"term":"GO:0030874"},{"annotations":[121475,102960,117114,101061],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030875"}]},"cv_name":"cellular_component","definition":"The portion of nuclear chromatin associated with the nucleolus; includes the DNA encoding the ribosomal RNA.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin","termid":"GO:0000785"},{"relation_name":"part_of","term_name":"nuclear chromosome","termid":"GO:0000228"},{"relation_name":"part_of","term_name":"nucleolus","termid":"GO:0005730"}],"gene_count":10,"genes_by_uniquename":{"SJAG_01005":null,"SJAG_01509":null,"SJAG_02723":null,"SJAG_02879":null,"SJAG_03603":null,"SJAG_03905":null,"SJAG_03923":null,"SJAG_04210":null,"SJAG_05180":null,"SJAG_05237":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0005730"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0005730","GO:0005694"],"is_obsolete":false,"name":"nucleolar chromatin","references_by_uniquename":{"GO_REF:0000107":null,"PMID:24184107":null},"termid":"GO:0030874","terms_by_termid":{"GO:0030874":null,"GO:0030875":null}}


id: MONDO:1011078
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Urolithiasis that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urolithiasis, non-human animal","termid":"MONDO:1010267"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urolithiasis, dog","secondary_identifiers":["OMIA:001033-9615"],"termid":"MONDO:1011078","xrefs":{"Monarch":{"xref_id":"1011078"}}}


id: GO:0051793
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a medium-chain fatty acid. A medium-chain fatty acid has an aliphatic tail containing 6 to 12 carbons.","definition_xrefs":["Wikipedia:Fatty_acid_metabolism"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid catabolic process","termid":"GO:0009062"},{"relation_name":"is_a","term_name":"medium-chain fatty acid metabolic process","termid":"GO:0051791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"medium-chain fatty acid catabolic process","synonyms":[{"name":"medium chain fatty acid catabolic process","type":"exact"},{"name":"medium chain fatty acid catabolism","type":"exact"},{"name":"medium-chain fatty acid breakdown","type":"exact"},{"name":"medium-chain fatty acid catabolism","type":"exact"},{"name":"medium-chain fatty acid degradation","type":"exact"}],"termid":"GO:0051793"}


id: MONDO:0011607
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"narcolepsy, susceptibility to","termid":"MONDO:0100049"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"narcolepsy 2, susceptibility to","secondary_identifiers":["OMIM:605841","UMLS:C1853901","MEDGEN:381293"],"synonyms":[{"name":"NRCLP2","type":"exact"},{"name":"narcolepsy 2","type":"related"},{"name":"narcolepsy 2, susceptibility to","type":"exact"}],"termid":"MONDO:0011607","xrefs":{"Monarch":{"xref_id":"0011607"}}}


id: PBO:0028404
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_ubiquinone_binding","termid":"PBO:0028404"}


id: MONDO:0020168
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete kinetic eyelid anomaly (obsolete MONDO:0020168)","secondary_identifiers":["Orphanet:98577"],"termid":"MONDO:0020168","xrefs":{"Monarch":{"xref_id":"0020168"}}}


id: PBO:0084450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mannose-6-phosphate isomerase; catalyzes the interconversion of fructose-6-P and mannose-6-P; required for early steps in protein mannosylation","termid":"PBO:0084450"}


id: GO:0018744
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: limonene-1,2-epoxide + H2O = limonene-1,2-diol. Other substrates include alicyclic and 1-methyl-substituted epoxides, such as 1-methylcyclohexene oxide, indene oxide and cyclohexene oxide.","definition_xrefs":["EC:3.3.2.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epoxide hydrolase activity","termid":"GO:0004301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"limonene-1,2-epoxide hydrolase activity","secondary_identifiers":["RHEA:10700","MetaCyc:3.3.2.8-RXN","UM-BBD_reactionID:r0734"],"synonyms":[{"name":"limonene oxide hydrolase activity","type":"related"}],"termid":"GO:0018744"}


id: MONDO:0001072
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A pre-eclampsia characterized by the presence of hypertension without evidence of end-organ damage, in a woman who was normotensive before 20 weeks' gestation.","definition_xrefs":["DOID:10590"],"direct_ancestors":[{"relation_name":"is_a","term_name":"preeclampsia","termid":"MONDO:0005081"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mild pre-eclampsia","secondary_identifiers":["icd11.foundation:690705840","ICD9:642.43","SCTID:41114007","ICD9:642.40","ICD9:642.41","ICD9:642.42","ICD9:642.44","MEDGEN:542203","UMLS:C0269658"],"termid":"MONDO:0001072","xrefs":{"Monarch":{"xref_id":"0001072"}}}


id: FYPO:0007375
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the methylation of histones in telomeric regions is abnormal. All histone methylation may be affected, or methylation of specific sites on specific histones may be altered.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone methylation during vegetative growth","termid":"FYPO:0000457"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0002494","FYPO:0002274","FYPO:0001320"],"is_obsolete":false,"name":"abnormal histone methylation at telomere during vegetative growth","synonyms":[{"name":"abnormal histone methylation at telomere during mitotic cell cycle","type":"related"},{"name":"abnormal telomeric histone methylation during vegetative growth","type":"exact"}],"termid":"FYPO:0007375"}


id: FYPO:0005917
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA derived from subtelomeric heterochromatin regions is higher than normal. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PMID:25798942"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"},{"relation_name":"is_a","term_name":"increased transcription","termid":"FYPO:0002875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0000002","FYPO:0000294","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased subtelomeric heterochromatin RNA level","synonyms":[{"name":"accumulation of subtelomere-derived RNA transcripts","type":"related"},{"name":"increased transcription at subtelomere","type":"narrow"},{"name":"increased transcription at subtelomeric heterochromatin during vegetative growth","type":"narrow"}],"termid":"FYPO:0005917"}


id: PBO:0002291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER protein translocation subcomplex subunit Sec72 (predicted)","termid":"PBO:0002291"}


id: MONDO:0009608
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine malabsorption syndrome","secondary_identifiers":["MEDGEN:78693","OMIM:250900","UMLS:C0268622","icd11.foundation:1061270147","MESH:C562682","SCTID:45812003"],"synonyms":[{"name":"Smith-strang disease","type":"related"},{"name":"methionine malabsorption syndrome","type":"exact"},{"name":"oasthouse urine disease","type":"related"}],"termid":"MONDO:0009608","xrefs":{"Monarch":{"xref_id":"0009608"}}}


id: GO:0061754
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces the quantity of fibrinogen circulating in the bloodstream.","definition_xrefs":["GOC:BHF","GOC:BHF_miRNA","GOC:rph","PMID:20570858"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of circulating fibrinogen levels","termid":"GO:0044537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of circulating fibrinogen levels","termid":"GO:0061754"}


id: GO:0001054
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.","definition_xrefs":["GOC:txnOH"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA polymerase I activity (obsolete GO:0001054)","synonyms":[{"name":"DNA-directed RNA polymerase activity involved in transcription from RNA polymerase I promoter","type":"exact"}],"termid":"GO:0001054"}


id: GO:0140159
data:
  {"annotated_genes":["SJAG_01183"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112792],"is_not":false,"summary":null,"term":"GO:0140159"}]},"cv_name":"biological_process","definition":"The directed movement of borate from inside of a cell, across the plasma membrane and into the extracellular region.","definition_xrefs":["PMID:17459946","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"borate transmembrane transport","termid":"GO:0035445"},{"relation_name":"is_a","term_name":"export across plasma membrane","termid":"GO:0140115"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01183":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"borate export across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140159","terms_by_termid":{"GO:0140159":null}}


id: PBO:0062130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily D member 10","termid":"PBO:0062130"}


id: GO:1990620
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A receptor complex composed of two ANPR-A molecules and expressed in the heart atrium in mammals; it plays a major role in the regulation of blood pressure and salt-fluid volume homeostasis. Binding of the ligand AMP in response to atrial distension (high blood volume) leads to guanylate cyclase activity of the ANPR-A receptor complex, thereby elevating intracellular cGMP levels. The end result is a reduction in blood volume and, therefore, a reduction in cardiac output and systemic blood pressure.","definition_xrefs":["GOC:ame","PMID:15117952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor complex","termid":"GO:0043235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"ANPR-A receptor complex","synonyms":[{"name":"NPR1 receptor complex","type":"related"}],"termid":"GO:1990620"}


id: GO:0051564
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the concentration of calcium ions in the smooth endoplasmic reticulum.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of endoplasmic reticulum calcium ion concentration","termid":"GO:0032470"},{"relation_name":"is_a","term_name":"smooth endoplasmic reticulum calcium ion homeostasis","termid":"GO:0051563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098771"}],"interesting_parent_ids":["GO:0098771","GO:0008150"],"is_obsolete":false,"name":"positive regulation of smooth endoplasmic reticulum calcium ion concentration","synonyms":[{"name":"elevation of calcium ion concentration in smooth endoplasmic reticulum","type":"exact"},{"name":"elevation of smooth ER calcium ion concentration","type":"exact"},{"name":"elevation of smooth endoplasmic reticulum calcium ion concentration","type":"exact"},{"name":"smooth endoplasmic reticulum calcium ion concentration elevation","type":"exact"}],"termid":"GO:0051564"}


id: FYPO:0004089
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of meiotic recombination is decreased during a zygotic meiotic nuclear division. Zygotic meiosis takes place immediately after conjugation and karyogamy, without intervening vegetative growth and division of diploid cells.","definition_xrefs":["PMID:11907273","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased meiotic recombination","termid":"FYPO:0000485"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0005447","FYPO:0000631","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased meiotic recombination during zygotic meiosis","synonyms":[{"name":"decreased meiotic recombination in zygotic nucleus","type":"exact"},{"name":"reduced meiotic recombination during zygotic meiosis","type":"exact"}],"termid":"FYPO:0004089"}


id: GO:0015988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The transport of protons across a membrane and against an electrochemical gradient, using energy from a source such as ATP hydrolysis, light, or electron transport.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton transmembrane transport","termid":"GO:1902600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"energy coupled proton transmembrane transport, against electrochemical gradient","termid":"GO:0015988"}


id: PBO:0075417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm associated antigen 4","termid":"PBO:0075417"}


id: GO:0021907
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands that results in the spatial identity of regions along the anterior-posterior axis of the spinal cord.","definition_xrefs":["GOC:dgh","GO_REF:0000021","GOC:dph","GOC:cls","GOC:jid","PMID:11262869"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor signaling pathway","termid":"GO:0008543"},{"relation_name":"part_of","term_name":"spinal cord anterior/posterior patterning","termid":"GO:0021512"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"fibroblast growth factor receptor signaling pathway involved in spinal cord anterior/posterior pattern formation","synonyms":[{"name":"fibroblast growth factor receptor signalling pathway in spinal cord anterior-posterior patterning","type":"exact"}],"termid":"GO:0021907"}


id: PBO:0045793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER degradation enhancing alpha-mannosidase like protein 3","termid":"PBO:0045793"}


id: FYPO:0008056
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which a poly(A)-specific ribonuclease activity is absent.","definition_xrefs":["PMID:19307292"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished ribonuclease activity","termid":"FYPO:0006301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000661","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"abolished poly(A)-specific ribonuclease activity","termid":"FYPO:0008056"}


id: GO:0006038
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of cell wall chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues, found in the walls of cells.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete cell wall chitin biosynthetic process (obsolete GO:0006038)","synonyms":[{"name":"cell wall chitin anabolism","type":"exact"},{"name":"cell wall chitin biosynthesis","type":"exact"},{"name":"cell wall chitin formation","type":"exact"},{"name":"cell wall chitin synthesis","type":"exact"}],"termid":"GO:0006038"}


id: GO:0022832
data:
  {"annotated_genes":["SJAG_05229","SJAG_00048"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76134],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008331"},{"annotations":[73368],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008308"}]},"cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a solute by a channel whose open state is dependent on the voltage across the membrane in which it is embedded.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gated channel activity","termid":"GO:0022836"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00048":null,"SJAG_05229":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"voltage-gated channel activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0022832","terms_by_termid":{"GO:0008308":null,"GO:0008331":null}}


id: PBO:0063905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PIH1 domain containing 1","termid":"PBO:0063905"}


id: PBO:0044541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DXZ4 associated non-coding transcript 2, distal","termid":"PBO:0044541"}


id: PBO:0040795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biglycan","termid":"PBO:0040795"}


id: GO:0140580
data:
  {"annotated_genes":["SJAG_00079","SJAG_01073","SJAG_03435"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[61081,67014,67077],"is_not":false,"summary":null,"term":"GO:0140580"}]},"cv_name":"molecular_function","definition":"The binding activity of a molecule that brings together a mitochondrial membrane and an autophagosome during mitophagy.","definition_xrefs":["PMID:33138913"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autophagosome-membrane adaptor activity","termid":"GO:0160183"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00079":null,"SJAG_01073":null,"SJAG_03435":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0030674","GO:0003674","GO:0060090"],"is_obsolete":false,"name":"mitochondrion autophagosome adaptor activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000117":null},"synonyms":[{"name":"mitophagy receptor","type":"exact"}],"termid":"GO:0140580","terms_by_termid":{"GO:0140580":null}}


id: MONDO:0023068
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Engelhard Yatziv syndrome","termid":"MONDO:0023068","xrefs":{"Monarch":{"xref_id":"0023068"}}}


id: GO:0006526
data:
  {"annotated_genes":["SJAG_00412","SJAG_00636","SJAG_01019","SJAG_01461","SJAG_01592","SJAG_00392","SJAG_00695","SJAG_04577","SJAG_00635"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72000,104420,99941,80181,108330,112911,113739,120253,112292],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042450"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arginine metabolic process","termid":"GO:0006525"},{"relation_name":"is_a","term_name":"glutamine family amino acid biosynthetic process","termid":"GO:0009084"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00392":null,"SJAG_00412":null,"SJAG_00635":null,"SJAG_00636":null,"SJAG_00695":null,"SJAG_01019":null,"SJAG_01461":null,"SJAG_01592":null,"SJAG_04577":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"L-arginine biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"arginine anabolism","type":"exact"},{"name":"arginine biosynthesis","type":"exact"},{"name":"arginine formation","type":"exact"},{"name":"arginine synthesis","type":"exact"}],"termid":"GO:0006526","terms_by_termid":{"GO:0042450":null}}


id: GO:0010536
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency or rate of activation of JAK (Janus Activated Kinase) protein. The activation of JAK protein is the process of introducing a phosphate group to a tyrosine residue of a JAK (Janus Activated Kinase) protein, thereby activating it.","definition_xrefs":["GOC:tb","GOC:dph","PMID:9135582"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of activation of Janus kinase activity (obsolete GO:0010536)","synonyms":[{"name":"positive regulation of activation of JAK protein","type":"exact"},{"name":"positive regulation of activation of JAK1 kinase activity","type":"narrow"},{"name":"positive regulation of activation of JAK1 protein","type":"narrow"},{"name":"positive regulation of activation of JAK2 kinase activity","type":"narrow"},{"name":"positive regulation of activation of JAK2 protein","type":"narrow"},{"name":"positive regulation of tyrosine phosphorylation of JAK protein","type":"related"},{"name":"positive regulation of tyrosine phosphorylation of JAK1 protein","type":"narrow"},{"name":"positive regulation of tyrosine phosphorylation of JAK2 protein","type":"narrow"}],"termid":"GO:0010536"}


id: PBO:0070315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY3 pseudogene 4","termid":"PBO:0070315"}


id: MONDO:0010711
data:
  {"annotated_genes":["SJAG_01511"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86860],"is_not":false,"summary":null,"term":"MONDO:0010711"}]},"cv_name":"mondo","definition":"A rare developmental defect during embryogenesis syndrome characterized by Robin sequence (micrognathia, glossoptosis, and cleft palate), atrial septal defect, persistence of the left superior vena cava, and talipes equinovarus. The phenotype is variable, some patients present with further dysmorphic characteristics (e.g. hypertelorism, ear abnormalities) while others do not have any key findings. Additional features, such as syndactyly, polydactyly, or brain anomalies (e.g. cerebellar hypoplasia), have also been reported. The syndrome is almost invariably lethal with affected males either dying prenatally or living just a few months.","definition_xrefs":["Orphanet:2886"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete syndrome or malformation associated with head and neck malformations (obsolete MONDO:0015501)","termid":"MONDO:0015501"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01511":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"TARP syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:311900","MEDGEN:333324","MESH:C536942","GARD:10089","DOID:0111780","SCTID:725911008","UMLS:C1839463"],"synonyms":[{"name":"Pierre Robin sequence - congenital heart defect - talipes","type":"related"},{"name":"Pierre Robin sequence-congenital heart defect-talipes syndrome","type":"exact"},{"name":"Pierre Robin syndrome - congenital heart defect - talipes","type":"related"},{"name":"Pierre Robin syndrome with congenital heart malformation and clubfoot","type":"related"},{"name":"Pierre Robin syndrome-congenital heart defect-talipes syndrome","type":"exact"},{"name":"TARP syndrome, X-linked recessive","type":"exact"},{"name":"TARPS","type":"related"},{"name":"talipes equinovarus - atrial septal defect - Robin sequence - persistence of the left superior vena cava","type":"related"},{"name":"talipes equinovarus, atrial septal defect, Robin sequence, and persistence of left Superior vena cava","type":"related"},{"name":"talipes equinovarus-atrial septal defect-Robin sequence-persistence of the left superior vena cava syndrome","type":"exact"},{"name":"tarp syndrome","type":"exact"}],"termid":"MONDO:0010711","terms_by_termid":{"MONDO:0010711":null},"xrefs":{"Monarch":{"xref_id":"0010711"}}}


id: PBO:0087882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional repressor; binds promoter sequences of cyclin genes, CYS3, and SMF2; not expressed during log phase of growth, but induced by stress or starvation during mitosis, and late in meiosis; represses 15% of all yeast genes as cells transition to quiescence; important for maintaining G1 arrest and for longevity of quiescent cells; member of Swi4p/Mbp1p family; phosphorylated by Cdc28p; relative distribution to nucleus increases upon DNA replication stress","termid":"PBO:0087882"}


id: GO:0006061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of sorbitol (D-glucitol), one of the ten stereoisomeric hexitols. It can be derived from glucose by reduction of the aldehyde group.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sorbitol metabolic process","termid":"GO:0006060"},{"relation_name":"is_a","term_name":"hexitol biosynthetic process","termid":"GO:0019406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"sorbitol biosynthetic process","synonyms":[{"name":"sorbitol anabolism","type":"exact"},{"name":"sorbitol biosynthesis","type":"exact"},{"name":"sorbitol formation","type":"exact"},{"name":"sorbitol synthesis","type":"exact"}],"termid":"GO:0006061"}


id: PBO:0067509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 649, pseudogene","termid":"PBO:0067509"}


id: PBO:0045739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EBF transcription factor 2","termid":"PBO:0045739"}


id: MONDO:0018402
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete female infertility due to gonadal dysgenesis (obsolete MONDO:0018402)","secondary_identifiers":["Orphanet:399877"],"synonyms":[{"name":"female infertility due to ovarian dysgenesis","type":"exact"},{"name":"rare female infertility due to gonadal dysgenesis","type":"related"},{"name":"rare female infertility due to ovarian dysgenesis","type":"exact"}],"termid":"MONDO:0018402","xrefs":{"Monarch":{"xref_id":"0018402"}}}


id: GO:0071303
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B3 stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to vitamin B3","termid":"GO:0033552"},{"relation_name":"is_a","term_name":"cellular response to vitamin","termid":"GO:0071295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to vitamin B3","synonyms":[{"name":"cellular response to niacin","type":"narrow"},{"name":"cellular response to nicotinamide","type":"narrow"}],"termid":"GO:0071303"}


id: PBO:0108880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TORC1 complex Tor2 interacting protein 1","termid":"PBO:0108880"}


id: MOD:01872
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cyclizes an S-carboxymethyl-L-cysteine residue to (R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid with the loss of water.","definition_xrefs":["Unimod:26","PubMed:12643538"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"S-carboxymethyl-L-cysteine","termid":"MOD:01061"},{"relation_name":"is_a","term_name":"iodoacetic acid derivatized residue","termid":"MOD:00399"},{"relation_name":"is_a","term_name":"(R)-5-oxo-1,4-tetrahydrothiazine-3-carboxylic acid","termid":"MOD:00419"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"cyclized N-terminal S-carboxymethyl-L-cysteine","synonyms":[{"name":"(R)-5-oxoperhydro-1,4-thiazine-3-carboxylic acid","type":"exact"},{"name":"5-oxothiomorpholine-3-carboxylic acid","type":"exact"},{"name":"Otc","type":"exact"},{"name":"Pyro-carbamidomethyl","type":"related"},{"name":"S-carbamoylmethylcysteine cyclization (N-terminus)","type":"related"}],"termid":"MOD:01872"}


id: PBO:0064573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"porcupine O-acyltransferase","termid":"PBO:0064573"}


id: GO:0033088
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of immature T cell proliferation in the thymus.","definition_xrefs":["GOC:add","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immature T cell proliferation in thymus","termid":"GO:0033084"},{"relation_name":"is_a","term_name":"negative regulation of T cell differentiation in thymus","termid":"GO:0033085"},{"relation_name":"is_a","term_name":"negative regulation of immature T cell proliferation","termid":"GO:0033087"},{"relation_name":"negatively_regulates","term_name":"immature T cell proliferation in thymus","termid":"GO:0033080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"negative regulation of immature T cell proliferation in thymus","synonyms":[{"name":"negative regulation of thymic T cell proliferation","type":"exact"},{"name":"negative regulation of thymocyte cell proliferation","type":"exact"},{"name":"negative regulation of thymocyte proliferation","type":"exact"}],"termid":"GO:0033088"}


id: GO:0016433
data:
  {"annotated_genes":["SJAG_02821","SJAG_01958","SJAG_03713","SJAG_03016","SJAG_03289"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78884],"is_not":false,"summary":null,"term":"GO:0016433"},{"annotations":[70058],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052909"},{"annotations":[80359],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052907"},{"annotations":[100183],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106142"},{"annotations":[59889],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000179"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methyladenine.","definition_xrefs":["GOC:go-curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA methyltransferase activity","termid":"GO:0008649"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01958":null,"SJAG_02821":null,"SJAG_03016":null,"SJAG_03289":null,"SJAG_03713":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016741","GO:0003674","GO:0016740","GO:0140098","GO:0003824"],"is_obsolete":false,"name":"rRNA (adenine) methyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"termid":"GO:0016433","terms_by_termid":{"GO:0000179":null,"GO:0016433":null,"GO:0052907":null,"GO:0052909":null,"GO:0106142":null}}


id: GO:0030574
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The proteolytic chemical reactions and pathways resulting in the breakdown of collagen in the extracellular matrix, usually carried out by proteases secreted by nearby cells.","definition_xrefs":["ISBN:0815316194","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"collagen metabolic process","termid":"GO:0032963"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"collagen catabolic process","secondary_identifiers":["Reactome:R-HSA-1442490"],"synonyms":[{"name":"collagen breakdown","type":"exact"},{"name":"collagen catabolism","type":"exact"},{"name":"collagen degradation","type":"exact"}],"termid":"GO:0030574"}


id: PBO:0079339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 23B","termid":"PBO:0079339"}


id: GO:0034326
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the transfer of a butanoyl (CH3-[CH2]2-CO-) group to an acceptor molecule.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete butanoyltransferase activity (obsolete GO:0034326)","termid":"GO:0034326"}


id: GO:0010545
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binds to and modulates the activity of the molecular chaperone Hsp90.","definition_xrefs":["GOC:tb","PMID:11146632","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete Hsp90 protein regulator activity (obsolete GO:0010545)","synonyms":[{"name":"Hsp90 protein regulator activity","type":"exact"}],"termid":"GO:0010545"}


id: MONDO:0003280
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital locomotor ataxia of lambs, thought to be associated with copper deficiency. It is characterized clinically by progressive incoordination of the hind limbs and pathologically by disruption of neuron and myelin development in the central nervous system. It is caused by a deficiency of metabolizable copper in the ewe during the last half of her pregnancy. (Dorland, 28th ed; Stedman, 26th ed)","definition_xrefs":["MESH:D013540"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sheep disease","termid":"MONDO:0024985"},{"relation_name":"is_a","term_name":"nutritional deficiency disease, non-human animal","termid":"MONDO:0700103"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"swayback","secondary_identifiers":["SCTID:61960001","DOID:5112"],"synonyms":[{"name":"swayback of sheep","type":"exact"}],"termid":"MONDO:0003280","xrefs":{"Monarch":{"xref_id":"0003280"}}}


id: PBO:0030048
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_ferric_iron_import","termid":"PBO:0030048"}


id: PBO:0018127
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Coffin-Lowry Syndrome","termid":"PBO:0018127"}


id: MONDO:0003088
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hemangioma arising from skeletal muscle.","definition_xrefs":["NCIT:C3699"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deep hemangioma","termid":"MONDO:0003096"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intramuscular hemangioma","secondary_identifiers":["MEDGEN:61450","DOID:468","ICDO:9132/0","UMLS:C0205789"],"synonyms":[{"name":"intramuscular angioma","type":"exact"},{"name":"intramuscular hemangioma (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0003088","xrefs":{"Monarch":{"xref_id":"0003088"}}}


id: GO:0035544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of assembly of the SNARE complex. The SNARE complex is a protein complex involved in membrane fusion; a stable ternary complex consisting of a four-helix bundle, usually formed from one R-SNARE and three Q-SNAREs with an ionic layer sandwiched between hydrophobic layers.","definition_xrefs":["GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex assembly","termid":"GO:0031333"},{"relation_name":"is_a","term_name":"negative regulation of vesicle fusion","termid":"GO:0031339"},{"relation_name":"is_a","term_name":"regulation of SNARE complex assembly","termid":"GO:0035542"},{"relation_name":"negatively_regulates","term_name":"SNARE complex assembly","termid":"GO:0035493"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"negatively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0044085","GO:0008150","GO:0061024","GO:0065003"],"is_obsolete":false,"name":"negative regulation of SNARE complex assembly","termid":"GO:0035544"}


id: MONDO:0022618
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"burning mouth syndrome","termid":"MONDO:0006687"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"burning mouth syndrome type 3","secondary_identifiers":["GARD:8558","UMLS:C2931487","MEDGEN:419423","MESH:C537413"],"synonyms":[{"name":"BMS-3","type":"related"},{"name":"Psychiatric disorders coexisting with burning mouth syndrome","type":"related"},{"name":"type 3 burning mouth syndrome","type":"related"}],"termid":"MONDO:0022618","xrefs":{"Monarch":{"xref_id":"0022618"}}}


id: PBO:0027874
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_during_cellular_response_to_ionizing_radiation","termid":"PBO:0027874"}


id: FYPO:0007809
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the amount, distribution, and morphology of cytoplasmic microtubules is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component","termid":"FYPO:0001233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal cytoplasmic microtubules","synonyms":[{"name":"normal cytoplasmic microtubule morphology","type":"exact"},{"name":"normal cytoplasmic microtubule structure","type":"narrow"}],"termid":"FYPO:0007809"}


id: MONDO:0011020
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Osteoporosis-oculocutaneous hypopigmentation syndrome is characterized by osteoporosis and congenital oculocutaneous hypopigmentation. Three cases have been described in the literature. The mode of inheritance appears to be autosomal recessive.","definition_xrefs":["Orphanet:2786"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with decreased bone density (obsolete MONDO:0019704)","termid":"MONDO:0019704"},{"relation_name":"is_a","term_name":"musculoskeletal system disorder","termid":"MONDO:0002081"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteoporosis-oculocutaneous hypopigmentation syndrome","secondary_identifiers":["SCTID:722113001","MESH:C536062","OMIM:601220","MEDGEN:331321","GARD:404","UMLS:C1832592"],"synonyms":[{"name":"Hernández-Fragoso syndrome","type":"exact"},{"name":"OOCH","type":"related"},{"name":"OOCH syndrome","type":"related"},{"name":"OOCHS","type":"exact"},{"name":"osteoporosis and oculocutaneous hypopigmentation syndrome","type":"related"},{"name":"osteoporosis oculocutaneous hypopigmentation syndrome","type":"related"}],"termid":"MONDO:0011020","xrefs":{"Monarch":{"xref_id":"0011020"}}}


id: GO:0070844
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of polyubiquitinated proteins in a cell, including the movement of proteins between specific compartments or structures within a cell.","definition_xrefs":["PMID:14675537","GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein transport","termid":"GO:0006886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"polyubiquitinated protein transport","synonyms":[{"name":"polyubiquitylated protein transport","type":"exact"}],"termid":"GO:0070844"}


id: MONDO:0003887
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm of the ovary characterized by the presence of glands with mucinous columnar epithelial cells in a fibrotic stroma.","definition_xrefs":["NCIT:C40040"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ovarian benign neoplasm","termid":"MONDO:0000646"},{"relation_name":"is_a","term_name":"ovarian epithelial tumor","termid":"MONDO:0002229"},{"relation_name":"is_a","term_name":"mucinous adenofibroma","termid":"MONDO:0002398"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ovarian mucinous adenofibroma","secondary_identifiers":["UMLS:C1518723","MEDGEN:309511","DOID:6469"],"synonyms":[{"name":"mucinous adenofibroma of ovary","type":"exact"},{"name":"ovarian mucinous adenofibroma","type":"exact"},{"name":"ovary mucinous adenofibroma","type":"exact"}],"termid":"MONDO:0003887","xrefs":{"Monarch":{"xref_id":"0003887"}}}


id: PBO:0114321
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"repeat region consensus DSESESSSEDSDSSSSSS ~7 copies","termid":"PBO:0114321"}


id: PBO:0028017
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_farnesyltransferase_activity","termid":"PBO:0028017"}


id: PBO:0080665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WAP four-disulfide core domain 10B","termid":"PBO:0080665"}


id: PBO:0081673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF594 divergent transcript","termid":"PBO:0081673"}


id: GO:0097061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a dendritic spine. A dendritic spine is a specialized protrusion from a neuronal dendrite and is involved in synaptic transmission.","definition_xrefs":["PMID:20410104","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"postsynapse organization","termid":"GO:0099173"},{"relation_name":"is_a","term_name":"neuron projection organization","termid":"GO:0106027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dendritic spine organization","synonyms":[{"name":"dendritic spine organisation","type":"exact"}],"termid":"GO:0097061"}


id: GO:1905102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of apoptosome assembly.","definition_xrefs":["GOC:bc","GOC:BHF_miRNA","PMID:26265044","GOC:BHF","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"is_a","term_name":"regulation of apoptosome assembly","termid":"GO:1905100"},{"relation_name":"positively_regulates","term_name":"apoptosome assembly","termid":"GO:0097314"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of apoptosome assembly","synonyms":[{"name":"activation of apoptosome assembly","type":"narrow"},{"name":"activation of apoptosome formation","type":"narrow"},{"name":"positive regulation of apoptosome formation","type":"exact"},{"name":"up regulation of apoptosome assembly","type":"exact"},{"name":"up regulation of apoptosome formation","type":"exact"},{"name":"up-regulation of apoptosome assembly","type":"exact"},{"name":"up-regulation of apoptosome formation","type":"exact"},{"name":"upregulation of apoptosome assembly","type":"exact"},{"name":"upregulation of apoptosome formation","type":"exact"}],"termid":"GO:1905102"}


id: MONDO:0011617
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arthropathy, erosive","secondary_identifiers":["MEDGEN:342978","MESH:C565273","OMIM:605935","UMLS:C1853829"],"synonyms":[{"name":"arthropathy, erosive","type":"exact"}],"termid":"MONDO:0011617","xrefs":{"Monarch":{"xref_id":"0011617"}}}


id: GO:0002343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any B cell selection process that occurs in the periphery.","definition_xrefs":["GOC:jal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B cell selection","termid":"GO:0002339"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peripheral B cell selection","synonyms":[{"name":"peripheral B lymphocyte selection","type":"exact"},{"name":"peripheral B-cell selection","type":"exact"},{"name":"peripheral B-lymphocyte selection","type":"exact"}],"termid":"GO:0002343"}


id: PBO:0025552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoribosylglycinamide formyltransferase","termid":"PBO:0025552"}


id: PBO:0049682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxyacylglutathione hydrolase","termid":"PBO:0049682"}


id: PBO:0036426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRP-independent ER targeting protein Snd3a (predicted)","termid":"PBO:0036426"}


id: GO:0048794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the swim bladder over time, from its formation to the mature structure. The swim bladder is used by some fishes to maintain buoyancy and may function in addition as a sound producing organ, a sound receptor, and a respiratory organ.","definition_xrefs":["GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"swim bladder development","synonyms":[{"name":"gas bladder development","type":"exact"}],"termid":"GO:0048794"}


id: MONDO:0014570
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any lethal congenital contracture syndrome in which the cause of the disease is a mutation in the ADCY6 gene.","definition_xrefs":["MONDO:design_pattern"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lethal congenital contracture syndrome","termid":"MONDO:0017436"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lethal congenital contracture syndrome 8","secondary_identifiers":["OMIM:616287","GARD:18565","MEDGEN:896058","UMLS:C4225385"],"synonyms":[{"name":"ADCY6 lethal congenital contracture syndrome","type":"exact"},{"name":"LCCS8","type":"related"},{"name":"lethal congenital contracture syndrome 8","type":"exact"},{"name":"lethal congenital contracture syndrome caused by mutation in ADCY6","type":"exact"},{"name":"lethal congenital contracture syndrome type 8","type":"exact"}],"termid":"MONDO:0014570","xrefs":{"Monarch":{"xref_id":"0014570"}}}


id: GO:0061588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a population of phospholipid molecules from one leaflet of the plasma membrane bilayer to the opposite leaflet as a result of a calcium stimulus.","definition_xrefs":["PMID:23532839","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane phospholipid scrambling","termid":"GO:0017121"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0051179","GO:0061024","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"calcium activated phospholipid scrambling","termid":"GO:0061588"}


id: _global:directly_positively_regulates
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q.","direct_ancestors":[{"relation_name":"is_a","term_name":"directly_regulates","termid":"_global:directly_regulates"},{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"},{"relation_name":"is_a","term_name":"positively_regulates","termid":"_global:positively_regulates"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"directly_positively_regulates","secondary_identifiers":["RO:0002629"],"termid":"_global:directly_positively_regulates"}


id: GO:0070056
data:
  {"annotated_genes":["SJAG_00405","SJAG_04922","SJAG_03536"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[100611,104715,120397],"is_not":false,"summary":null,"term":"GO:0070056"}]},"cv_name":"cellular_component","definition":"The region of the prospore membrane that extends to surround the spore nucleus; coated with specific proteins that are thought to play a role in prospore membrane organization.","definition_xrefs":["PMID:14702385","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane","termid":"GO:0016020"},{"relation_name":"part_of","term_name":"prospore membrane","termid":"GO:0005628"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00405":null,"SJAG_03536":null,"SJAG_04922":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005628"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005628"],"is_obsolete":false,"name":"prospore membrane leading edge","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"forespore membrane leading edge","type":"exact"}],"termid":"GO:0070056","terms_by_termid":{"GO:0070056":null}}


id: PBO:0085099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear pore protein; involved in nuclear export of pre-tRNA and in re-export of mature tRNAs after their retrograde import from the cytoplasm; deletion mutation extends replicative lifespan, as does exclusion of Los1p from the nucleus in response to caloric restriction","termid":"PBO:0085099"}


id: MONDO:0000788
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A allergy involving fish.","definition_xrefs":["MONDO:patterns/allergy"],"gene_count":0,"genotype_count":0,"name":"obsolete fish allergy (obsolete MONDO:0000788)","secondary_identifiers":["DOID:0060513"],"synonyms":[{"name":"allergy of fish food product","type":"exact"},{"name":"fish food product allergic disease","type":"exact"}],"termid":"MONDO:0000788","xrefs":{"Monarch":{"xref_id":"0000788"}}}


id: PBO:0038850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase with thrombospondin type 1 motif 18","termid":"PBO:0038850"}


id: PBO:0015668
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not functionally complement S. cerevisiae VHT1","termid":"PBO:0015668"}


id: MONDO:0010634
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"jaundice, familial obstructive, of infancy","secondary_identifiers":["MESH:C564118","UMLS:C1839927","OMIM:308600","MEDGEN:326992"],"synonyms":[{"name":"jaundice, familial obstructive, of infancy","type":"exact"}],"termid":"MONDO:0010634","xrefs":{"Monarch":{"xref_id":"0010634"}}}


id: MONDO:0016953
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chromosome 2q duplication is a chromosome abnormality that occurs when there is an extra copy of genetic material on the long arm (q) of chromosome 2. The severity of the condition and the signs and symptoms depend on the size and location of the duplication and which genes are involved. Features that often occur in people with chromosome 2q duplication include developmental delay, intellectual disability, behavioral problems and distinctive facial features. Most cases are not inherited, but people can pass the duplication on to their children. Treatment is based on the signs and symptoms present in each person.","definition_xrefs":["GARD:0005340"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial duplication of chromosome 2","termid":"MONDO:0016922"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial duplication of the long arm of chromosome 2","secondary_identifiers":["GARD:5340","MESH:C535367","MEDGEN:162771","Orphanet:262842","UMLS:C0795805","icd11.foundation:472179859"],"synonyms":[{"name":"2q duplication","type":"related"},{"name":"2q trisomy","type":"related"},{"name":"Duplication 2q","type":"related"},{"name":"chromosome 2q duplication","type":"related"},{"name":"partial duplication of chromosome 2q","type":"exact"},{"name":"partial duplication of the long arm of chromosome type 2","type":"exact"},{"name":"partial trisomy 2q","type":"related"},{"name":"partial trisomy of chromosome 2q","type":"exact"},{"name":"partial trisomy of the long arm of chromosome 2","type":"exact"},{"name":"trisomy 2q","type":"related"}],"termid":"MONDO:0016953","xrefs":{"Monarch":{"xref_id":"0016953"}}}


id: MONDO:0004795
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the anatomical structures of the outer ear and ear canal secondary to an infectious process. Bacterial etiology is most common, but fungal infection is also possible. Symptoms include erythema, edema, and pain.","definition_xrefs":["NCIT:C3299"],"direct_ancestors":[{"relation_name":"is_a","term_name":"external ear disorder","termid":"MONDO:0002776"},{"relation_name":"is_a","term_name":"ear infection","termid":"MONDO:0021666"},{"relation_name":"is_a","term_name":"post-infectious disorder","termid":"MONDO:0021669"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"otitis externa","secondary_identifiers":["DOID:9463","icd11.foundation:1303990434","ICD10CM:H60","MESH:D010032","NCIT:C79601","ICD9:380.1","ICD9:380.10","MEDGEN:10505","EFO:0009560","ICD10CM:H60.33","SCTID:3135009","UMLS:C0029878"],"synonyms":[{"name":"external Ear infection","type":"exact"},{"name":"infectious otitis externa","type":"exact"},{"name":"otitis externa","type":"exact"},{"name":"outer Ear infection","type":"exact"},{"name":"swimmer's Ear","type":"exact"},{"name":"swimmer's ear","type":"exact"}],"termid":"MONDO:0004795","xrefs":{"Monarch":{"xref_id":"0004795"}}}


id: GO:0098605
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-Serine + Selenohomocysteine => L-Selenocystathionine + H2O.","definition_xrefs":["PMID:6456763"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"selenocystathionine beta-synthase activity","secondary_identifiers":["Reactome:R-HSA-2408559"],"termid":"GO:0098605"}


id: GO:0039527
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont interferes with, inhibits or disrupts a TRAF-mediated signal transduction pathway in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:20335533","PMID:33372174","GOC:bf","GOC:sp","PMID:28522607","PMID:27387501","PMID:31311877"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host signal transduction pathway","termid":"GO:0052029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host TRAF-mediated signal transduction","secondary_identifiers":["GO:0039547"],"synonyms":[{"name":"disruption by virus of host TRAF-mediated signal transduction","type":"narrow"},{"name":"inhibition of host TRAF-mediated signal transduction by virus","type":"exact"},{"name":"inhibition of host TRAFs by virus","type":"narrow"},{"name":"negative regulation by virus of host TRAF-mediated signal transduction","type":"broad"},{"name":"suppression by virus of host TRAF activity","type":"exact"},{"name":"suppression by virus of host TRAF-mediated signal transduction","type":"exact"},{"name":"suppression by virus of host tumor necrosis factor receptor-associated factor signaling","type":"exact"}],"termid":"GO:0039527"}


id: PBO:0076958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transforming growth factor beta receptor 1","termid":"PBO:0076958"}


id: PBO:0039657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adaptor related protein complex 2 subunit alpha 1","termid":"PBO:0039657"}


id: PBO:0066469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication factor C 5 pseudogene 1","termid":"PBO:0066469"}


id: MONDO:1012924
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cataract that occurs in dogs due to a mutation in the FYCO1 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cataract, non-human animal","termid":"MONDO:1012962"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cataract, FYCO1-related, dog","secondary_identifiers":["OMIA:002536-9615"],"synonyms":[{"name":"Juvenile cataract","type":"related"}],"termid":"MONDO:1012924","xrefs":{"Monarch":{"xref_id":"1012924"}}}


id: PBO:0040567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-1,4-galactosyltransferase 2","termid":"PBO:0040567"}


id: GO:0043535
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the migration of the endothelial cells of blood vessels.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endothelial cell migration","termid":"GO:0010594"},{"relation_name":"regulates","term_name":"blood vessel endothelial cell migration","termid":"GO:0043534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of blood vessel endothelial cell migration","termid":"GO:0043535"}


id: PBO:0066779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 77","termid":"PBO:0066779"}


id: GO:0002577
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immune system process","termid":"GO:0002682"},{"relation_name":"regulates","term_name":"antigen processing and presentation","termid":"GO:0019882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of antigen processing and presentation","termid":"GO:0002577"}


id: PBO:0031858
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_spindle","termid":"PBO:0031858"}


id: PBO:0042737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENPN antisense RNA 1","termid":"PBO:0042737"}


id: MONDO:0013028
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Adenosine monophosphate (AMP) deaminase deficiency is a metabolic disorder for which two forms have been described. Lack of activity of the erythrocyte isoform of AMP deaminase has been described in subjects with low plasma uric acid levels without obvious clinical relevance and will not be described further. Myoadenylate deaminase deficiency is an inherited disorder of muscular energy metabolism with a lack of AMP deaminase activity in skeletal muscle. It is characterized by exercise-induced muscle pain, cramps and/or early fatigue.","definition_xrefs":["Orphanet:45"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn mitochondrial myopathy","termid":"MONDO:0009637"},{"relation_name":"is_a","term_name":"inborn disorder of purine metabolism","termid":"MONDO:0019236"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0019254"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0019254","MONDO:0005336","MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"adenosine monophosphate deaminase deficiency","secondary_identifiers":["UMLS:C2931781","MESH:C538234","MEDGEN:444140","ICD9:277.2","ICD10CM:E79.2","GARD:547","SCTID:9105005","icd11.foundation:550341491"],"synonyms":[{"name":"AMP deaminase deficiency","type":"exact"},{"name":"myoadenylate deaminase deficiency","type":"exact"}],"termid":"MONDO:0013028","xrefs":{"Monarch":{"xref_id":"0013028"}}}


id: PBO:0030871
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_metabolic_process_during_vegetative_growth","termid":"PBO:0030871"}


id: FYPO:0008373
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell surface is normal (i.e. indistinguishable from wild-type) during a cellular response to salt stress.","definition_xrefs":["PomBase:pb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to cell surface during vegetative growth","termid":"FYPO:0008372"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0001312","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to cell surface during cellular response to salt stress","termid":"FYPO:0008373"}


id: GO:0006913
data:
  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kinase activity","type":"exact"}],"termid":"GO:0004713","terms_by_termid":{"GO:0004713":null}}


id: PBO:0048673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactosidase beta 1 like 3","termid":"PBO:0048673"}


id: GO:0005482
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete vesicle targeting (obsolete GO:0005482)","synonyms":[{"name":"vesicle targeting","type":"exact"}],"termid":"GO:0005482"}


id: PBO:0052575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KMT5A pseudogene 3","termid":"PBO:0052575"}


id: PBO:0054628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2033","termid":"PBO:0054628"}


id: PBO:0044689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"discoidin domain receptor tyrosine kinase 1","termid":"PBO:0044689"}


id: GO:0051679
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 6-alpha-maltosylglucose, also known as isopanose.","definition_xrefs":["PubChem_Compound:439991","GOC:ai","LIGAND:C03367"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide metabolic process","termid":"GO:0009311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"6-alpha-maltosylglucose metabolic process","synonyms":[{"name":"6-alpha-maltosylglucose metabolism","type":"exact"},{"name":"isopanose metabolic process","type":"exact"},{"name":"isopanose metabolism","type":"exact"}],"termid":"GO:0051679"}


id: PBO:0055595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3031","termid":"PBO:0055595"}


id: GO:0034579
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: fumarate + n-hexane = (1-methylpentyl)succinate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete (1-methylpentyl)succinate synthase activity (obsolete GO:0034579)","termid":"GO:0034579"}


id: PBO:0071563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 29","termid":"PBO:0071563"}


id: PATO:0002376
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structure quality inhering in a bearer by virtue of the bearer's being filled with air.","definition_xrefs":["PATOC:CVS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure, cavities","termid":"PATO:0002014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inflated","synonyms":[{"name":"air-filled","type":"exact"}],"termid":"PATO:0002376"}


id: GO:0016469
data:
  {"annotated_genes":["SJAG_00438","SJAG_02598","SJAG_04122","SJAG_00836","SJAG_04955","SJAG_01447","SJAG_01471","SJAG_01397","SJAG_00133","SJAG_01913","SJAG_02782","SJAG_05294","SJAG_00915","SJAG_02564","SJAG_00212","SJAG_02105","SJAG_07003","SJAG_03114","SJAG_05204","SJAG_MIT09","SJAG_03962","SJAG_MIT37","SJAG_00542","SJAG_03925","SJAG_04015","SJAG_00136","SJAG_MIT15","SJAG_01817","SJAG_00985","SJAG_03406","SJAG_02023","SJAG_00516"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[68320,105473,79507,58027,68536,60316,65100,65412,66145,120929,120940,109714,96623,71860,117685,120935,74421],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045259"},{"annotations":[120941],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0033177"},{"annotations":[97430,97611,62649,101732,105703,93826,91930],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000220"},{"annotations":[72896,61008,100698,98393,104467,111694,89801,120593],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000221"}]},"cv_name":"cellular_component","definition":"A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible.","definition_xrefs":["PMID:16691483","GOC:mah","ISBN:0716743663"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"}],"gene_count":32,"genes_by_uniquename":{"SJAG_00133":null,"SJAG_00136":null,"SJAG_00212":null,"SJAG_00438":null,"SJAG_00516":null,"SJAG_00542":null,"SJAG_00836":null,"SJAG_00915":null,"SJAG_00985":null,"SJAG_01397":null,"SJAG_01447":null,"SJAG_01471":null,"SJAG_01817":null,"SJAG_01913":null,"SJAG_02023":null,"SJAG_02105":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_02782":null,"SJAG_03114":null,"SJAG_03406":null,"SJAG_03925":null,"SJAG_03962":null,"SJAG_04015":null,"SJAG_04122":null,"SJAG_04955":null,"SJAG_05204":null,"SJAG_05294":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"proton-transporting two-sector ATPase complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"synonyms":[{"name":"hydrogen-transporting two-sector ATPase complex","type":"exact"},{"name":"vacuolar hydrogen-transporting ATPase","type":"related"}],"termid":"GO:0016469","terms_by_termid":{"GO:0000220":null,"GO:0000221":null,"GO:0033177":null,"GO:0045259":null}}


id: MONDO:0015814
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary lymphoma of the skin composed of various numbers of small and large irregular neoplastic follicle center cells. Its morphologic pattern can be nodular, diffuse, or nodular and diffuse. It presents with solitary or grouped plaques and tumors, and it usually involves the scalp, forehead, or trunk. It rarely involves the legs. This type of cutaneous lymphoma tends to remain localized to the skin.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"indolent primary cutaneous B-cell lymphoma","termid":"MONDO:0015819"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0004992","MONDO:0005570","MONDO:0005093"],"is_obsolete":false,"name":"primary cutaneous follicle center lymphoma","secondary_identifiers":["GARD:13701","ONCOTREE:PCFCL","SCTID:404143002","UMLS:C1333171","ICD10CM:C82.6","ICDO:9597/3","NCIT:C7217","Orphanet:178540","icd11.foundation:77501812","MEDGEN:234180"],"synonyms":[{"name":"Crosti's disease","type":"exact"},{"name":"PCFCL","type":"exact"},{"name":"Reticulohistiocytoma of the dorsum","type":"exact"},{"name":"cutaneous follicle center lymphoma","type":"exact"},{"name":"cutaneous follicle centre lymphoma","type":"exact"}],"termid":"MONDO:0015814","xrefs":{"Monarch":{"xref_id":"0015814"}}}


id: GO:0022900
data:
  {"annotated_genes":["SJAG_00976","SJAG_02646","SJAG_00755","SJAG_04152","SJAG_01671","SJAG_MIT03","SJAG_MIT13","SJAG_01490","SJAG_00080","SJAG_03490","SJAG_04397","SJAG_MIT04","SJAG_01355","SJAG_02504","SJAG_MIT20","SJAG_05629","SJAG_01190","SJAG_00260","SJAG_02398","SJAG_01077","SJAG_03920","SJAG_02744","SJAG_01763","SJAG_00601","SJAG_07007","SJAG_07006"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[120898,75935,80577,78133,120949,117300,120920,62472,73522,110102,116068],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0006123"},{"annotations":[114694],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0006120"},{"annotations":[118599,90586,90957,115033],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0006121"},{"annotations":[78132,75445,77368,77450,62438,115239,105872,73859,119533,120925],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0006122"},{"annotations":[70915],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140647"}]},"cv_name":"biological_process","definition":"A process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors.","definition_xrefs":["GOC:mtg_electron_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"generation of precursor metabolites and energy","termid":"GO:0006091"}],"gene_count":26,"genes_by_uniquename":{"SJAG_00080":null,"SJAG_00260":null,"SJAG_00601":null,"SJAG_00755":null,"SJAG_00976":null,"SJAG_01077":null,"SJAG_01190":null,"SJAG_01355":null,"SJAG_01490":null,"SJAG_01671":null,"SJAG_01763":null,"SJAG_02398":null,"SJAG_02504":null,"SJAG_02646":null,"SJAG_02744":null,"SJAG_03490":null,"SJAG_03920":null,"SJAG_04152":null,"SJAG_04397":null,"SJAG_05629":null,"SJAG_07006":null,"SJAG_07007":null,"SJAG_MIT03":null,"SJAG_MIT04":null,"SJAG_MIT13":null,"SJAG_MIT20":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"electron transport chain","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["Wikipedia:Electron_transport_chain"],"termid":"GO:0022900","terms_by_termid":{"GO:0006120":null,"GO:0006121":null,"GO:0006122":null,"GO:0006123":null,"GO:0140647":null}}


id: GO:2000659
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of interleukin-1-mediated signaling pathway.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine-mediated signaling pathway","termid":"GO:0001959"},{"relation_name":"regulates","term_name":"interleukin-1-mediated signaling pathway","termid":"GO:0070498"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of interleukin-1-mediated signaling pathway","synonyms":[{"name":"regulation of IL-1 alpha-mediated signaling pathway","type":"related"},{"name":"regulation of IL-1 beta-mediated signaling pathway","type":"related"},{"name":"regulation of IL-1-mediated signaling pathway","type":"exact"},{"name":"regulation of interleukin-1 alpha-mediated signaling pathway","type":"related"},{"name":"regulation of interleukin-1 beta-mediated signaling pathway","type":"related"},{"name":"regulation of interleukin-1-mediated signalling pathway","type":"exact"}],"termid":"GO:2000659"}


id: PBO:0061015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NGG1 interacting factor 3 like 1","termid":"PBO:0061015"}


id: MONDO:0022785
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cleft palate cardiac defect ectrodactyly","termid":"MONDO:0022785","xrefs":{"Monarch":{"xref_id":"0022785"}}}


id: GO:2000672
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of motor neuron apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of neuron apoptotic process","termid":"GO:0043524"},{"relation_name":"is_a","term_name":"regulation of motor neuron apoptotic process","termid":"GO:2000671"},{"relation_name":"negatively_regulates","term_name":"motor neuron apoptotic process","termid":"GO:0097049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of motor neuron apoptotic process","synonyms":[{"name":"negative regulation of motoneuron apoptosis","type":"exact"},{"name":"negative regulation of motor neuron apoptosis","type":"narrow"}],"termid":"GO:2000672"}


id: PBO:0064107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pejvakin","termid":"PBO:0064107"}


id: PBO:0070207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 134 pseudogene","termid":"PBO:0070207"}


id: MONDO:0011076
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare genetic skeletal muscle disease characterized by abnormal chimeric aggregates of desmin and other cytoskeletal proteins and granulofilamentous material at the ultrastructural level in muscle biopsies and variable clinical/ myopathological features, age of disease onset and rate of disease progression. Patients present with bilateral skeletal muscle weakness that starts in distal leg muscles and spreads proximally, sometimes involving trunk, neck flexors and facial muscles and often cardiomyopathy manifested by conduction blocks, arrhythmias, chronic heart failure, and sometimes tachyarrhythmia. Weakness eventually leads to wheelchair dependence. Respiratory insufficiency can be a major cause of disability and death, beginning with nocturnal hyperventilation with oxygen desaturation and progressing to daytime respiratory failure.","definition_xrefs":["Orphanet:98909"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"myopathy","termid":"MONDO:0005336"},{"relation_name":"excluded_subClassOf","term_name":"autosomal recessive limb-girdle muscular dystrophy","termid":"MONDO:0015152"},{"relation_name":"excluded_subClassOf","term_name":"autosomal dominant distal myopathy","termid":"MONDO:0016108"},{"relation_name":"excluded_subClassOf","term_name":"hereditary inclusion-body myopathy","termid":"MONDO:0016112"},{"relation_name":"excluded_subClassOf","term_name":"qualitative or quantitative defects of desmin","termid":"MONDO:0016187"},{"relation_name":"excluded_subClassOf","term_name":"familial restrictive cardiomyopathy","termid":"MONDO:0016340"},{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"qualitative or quantitative defects of desmin","termid":"MONDO:0016187"},{"relation_name":"is_a","term_name":"familial dilated cardiomyopathy","termid":"MONDO:0016333"},{"relation_name":"is_a","term_name":"myofibrillar myopathy","termid":"MONDO:0018943"},{"relation_name":"is_a","term_name":"hereditary neuromuscular disease","termid":"MONDO:0100546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0005267","MONDO:0002320","MONDO:0005336"],"is_obsolete":false,"name":"myofibrillar myopathy 1","secondary_identifiers":["GARD:16870","OMIM:601419","MEDGEN:330449","DOID:0110286","OMIM:615325","UMLS:C1832370","Orphanet:363543","DOID:0080092"],"synonyms":[{"name":"CMD1F and LGMD1D","type":"related"},{"name":"CMD1F and LGMD1D, formerly","type":"related"},{"name":"DES autosomal recessive limb-girdle muscular dystrophy","type":"exact"},{"name":"DES myofibrillar myopathy (disease)","type":"exact"},{"name":"IBM1","type":"related"},{"name":"MFM1","type":"related"},{"name":"arrhythmogenic right ventricular cardiomyopathy 7","type":"related"},{"name":"arrhythmogenic right ventricular cardiomyopathy 7, formerly","type":"related"},{"name":"arrhythmogenic right ventricular dysplasia, familial, 7","type":"related"},{"name":"arrhythmogenic right ventricular dysplasia, familial, 7, formerly","type":"related"},{"name":"autosomal recessive limb-girdle muscular dystrophy caused by mutation in DES","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy type 2R","type":"exact"},{"name":"cardiomyopathy, dilated, 1F and limb-girdle muscular dystrophy type 1D","type":"related"},{"name":"cardiomyopathy, dilated, 1F and limb-girdle muscular dystrophy type 1D, formerly","type":"related"},{"name":"cardiomyopathy, dilated, with conduction defect and muscular dystrophy","type":"related"},{"name":"desmin-related myofibrillar myopathy","type":"exact"},{"name":"desmin-related myopathy","type":"related"},{"name":"desmin-related myopathy with arrhythmogenic right ventricular cardiomyopathy","type":"related"},{"name":"desminopathy","type":"exact"},{"name":"desminopathy, primary","type":"related"},{"name":"inclusion body myopathy 1, autosomal dominant","type":"related"},{"name":"inclusion body myopathy 1, autosomal dominant, formerly","type":"related"},{"name":"myofibrillar myopathy (disease) caused by mutation in DES","type":"exact"},{"name":"myofibrillar myopathy 1","type":"exact"},{"name":"myofibrillar myopathy type 1","type":"exact"},{"name":"myofibrillar myopathy with arrhythmogenic right ventricular cardiomyopathy","type":"related"},{"name":"myopathy, myofibrillar, 1","type":"related"},{"name":"myopathy, myofibrillar, desmin-related","type":"related"},{"name":"myopathy, myofibrillar, type 1","type":"exact"}],"termid":"MONDO:0011076","xrefs":{"Monarch":{"xref_id":"0011076"}}}


id: MONDO:0009653
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lysosomal storage disease characterized clinically by psychomotor retardation and visual abnormalities including corneal clouding, retinal degeneration, or strabismus.","definition_xrefs":["Orphanet:578"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"familial mucolipidosis","termid":"MONDO:0031422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002561"}],"interesting_parent_ids":["MONDO:0002561","MONDO:0005328","MONDO:0005066"],"is_obsolete":false,"name":"mucolipidosis type IV","secondary_identifiers":["ICD10CM:E75.11","GTR:AN1124590","GARD:94","GTR:AN1125033","MEDGEN:68663","SCTID:725296006","GTR:AN1148743","UMLS:C0238286","GTR:AN1125032","NCIT:C84896","SCTID:111384001","OMIM:252650","DOID:0080490","NORD:1460"],"synonyms":[{"name":"Berman syndrome","type":"related"},{"name":"ML 4","type":"related"},{"name":"ML IV","type":"exact"},{"name":"ML4","type":"related"},{"name":"MLIV","type":"exact"},{"name":"Mucolipidosis IV","type":"exact"},{"name":"ganglioside neuraminidase deficiency","type":"related"},{"name":"ganglioside sialidase deficiency","type":"related"},{"name":"mucolipidosis 4","type":"related"},{"name":"mucolipidosis IV","type":"related"},{"name":"mucolipidosis type 4","type":"exact"},{"name":"mucolipidosis type IV","type":"exact"},{"name":"sialolipidosis","type":"related"}],"termid":"MONDO:0009653","xrefs":{"Monarch":{"xref_id":"0009653"}}}


id: PBO:0075514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal peptidase complex subunit 3","termid":"PBO:0075514"}


id: PBO:0033790
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_rate_of_kinetochore_sliding_during_chromosome_recapture","termid":"PBO:0033790"}


id: MONDO:0011423
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive limb girdle muscular dystrophy type 2E (LGMD2E) is a subtype of autosomal recessive limb girdle muscular dystrophy characterized by a childhood to adolescent onset of progressive pelvic- and shoulder-girdle muscle weakness, particularly affecting the pelvic girdle (adductors and flexors of hip). Usually the knees are the earliest and most affected muscles. In advanced stages, involvement of the shoulder girdle (resulting in scapular winging) and the distal muscle groups are observed. Calf hypertrophy, cardiomyopathy, respiratory impairment, tendon contractures, scoliosis, and exercise-induced myoglobinuria may be observed.","definition_xrefs":["Orphanet:119"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive limb-girdle muscular dystrophy","termid":"MONDO:0015152"},{"relation_name":"is_a","term_name":"qualitative or quantitative defects of beta-sarcoglycan","termid":"MONDO:0016142"},{"relation_name":"is_a","term_name":"familial dilated cardiomyopathy","termid":"MONDO:0016333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005267","MONDO:0005336"],"is_obsolete":false,"name":"autosomal recessive limb-girdle muscular dystrophy type 2E","secondary_identifiers":["GARD:3851","OMIM:604286","DOID:0110279","SCTID:718850008","UMLS:C1858593","MEDGEN:347674"],"synonyms":[{"name":"LGMD due to beta-sarcoglycan deficiency","type":"exact"},{"name":"LGMD type 2E","type":"exact"},{"name":"LGMD2E","type":"exact"},{"name":"LGMDR4","type":"exact"},{"name":"SGCB autosomal recessive limb-girdle muscular dystrophy","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy caused by mutation in SGCB","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy type 2E","type":"exact"},{"name":"beta-sarcoglycan limb-girdle muscular dystrophy","type":"related"},{"name":"beta-sarcoglycan-related LGMD R4","type":"exact"},{"name":"beta-sarcoglycan-related limb-girdle muscular dystrophy R4","type":"exact"},{"name":"beta-sarcoglycanopathy","type":"broad"},{"name":"limb-girdle muscular dystrophy due to beta-sarcoglycan deficiency","type":"exact"},{"name":"limb-girdle muscular dystrophy type 2E","type":"exact"},{"name":"muscular dystrophy limb-girdle with beta-sarcoglycan deficiency","type":"related"},{"name":"muscular dystrophy, limb-girdle, autosomal recessive 4","type":"exact"},{"name":"muscular dystrophy, limb-girdle, type 2E","type":"exact"}],"termid":"MONDO:0011423","xrefs":{"Monarch":{"xref_id":"0011423"}}}


id: PBO:0042179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin B1","termid":"PBO:0042179"}


id: GO:1903545
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a butyrate stimulus.","definition_xrefs":["PMID:9734870","GO_REF:0000071","GOC:mr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to fatty acid","termid":"GO:0071398"},{"relation_name":"is_a","term_name":"response to butyrate","termid":"GO:1903544"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to butyrate","termid":"GO:1903545"}


id: PBO:0086415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative GPI protein; SWAT-GFP and mCherry fusion proteins localize to the vacuole; transcription dependent upon Azf1p","termid":"PBO:0086415"}


id: GO:0016674
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces an acceptor other than quinone or a related compound, oxygen, NAD, NADP, an iron-sulfur protein, disulfide or a cytochrome.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidoreductase activity, acting on sulfur group of donors, other acceptors (obsolete GO:0016674)","synonyms":[{"name":"oxidoreductase activity, acting on sulfur group of donors, other acceptors","type":"exact"},{"name":"oxidoreductase activity, acting on sulphur group of donors, other acceptors","type":"exact"}],"termid":"GO:0016674"}


id: PBO:0048490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GCSH pseudogene 2","termid":"PBO:0048490"}


id: MONDO:0013274
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any retinitis pigmentosa in which the cause of the disease is a mutation in the TTC8 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"},{"relation_name":"is_a","term_name":"retinal ciliopathy","termid":"MONDO:0022410"},{"relation_name":"is_a","term_name":"TTC8-related ciliopathy","termid":"MONDO:1040049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736","MONDO:0005328"],"is_obsolete":false,"name":"retinitis pigmentosa 51","secondary_identifiers":["UMLS:C3150715","OMIM:613464","GARD:15665","DOID:0110398","MEDGEN:462065","ICD10CM:H35.5"],"synonyms":[{"name":"RP51","type":"exact"},{"name":"TTC8 retinitis pigmentosa","type":"exact"},{"name":"retinitis pigmentosa 51","type":"exact"},{"name":"retinitis pigmentosa caused by mutation in TTC8","type":"exact"},{"name":"retinitis pigmentosa type 51","type":"exact"}],"termid":"MONDO:0013274","xrefs":{"Monarch":{"xref_id":"0013274"}}}


id: PBO:0060313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin light chain kinase 2","termid":"PBO:0060313"}


id: GO:0050237
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pyridoxine + O2 = pyridoxal + H2O2.","definition_xrefs":["EC:1.1.3.12","MetaCyc:PYRIDOXINE-4-OXIDASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor","termid":"GO:0016899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"pyridoxine 4-oxidase activity","secondary_identifiers":["RHEA:15033"],"synonyms":[{"name":"pyridoxin 4-oxidase activity","type":"related"},{"name":"pyridoxine:oxygen 4-oxidoreductase activity","type":"related"},{"name":"pyridoxol 4-oxidase activity","type":"related"}],"termid":"GO:0050237"}


id: MONDO:0019271
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete acrokeratoderma (obsolete MONDO:0019271)","secondary_identifiers":["Orphanet:79356"],"termid":"MONDO:0019271","xrefs":{"Monarch":{"xref_id":"0019271"}}}


id: MONDO:0006864
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign, inflammatory, variably ulcerated, occasionally bilateral, self-healing lesion of the minor salivary glands that is often confused clinically and histologically with carcinoma.","definition_xrefs":["MESH:D012797"],"direct_ancestors":[{"relation_name":"is_a","term_name":"salivary gland disorder","termid":"MONDO:0001142"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"necrotizing sialometaplasia","secondary_identifiers":["SCTID:109769000","MEDGEN:48659","DOID:12901","MedDRA:10072176","ICD9:527.8","UMLS:C0037033"],"termid":"MONDO:0006864","xrefs":{"Monarch":{"xref_id":"0006864"}}}


id: GO:0102076
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-carotene + O2 = 10'-apo-beta-carotenal + beta-ionone.","definition_xrefs":["EC:1.13.11.71","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"beta,beta-carotene-9',10'-cleaving oxygenase activity","secondary_identifiers":["MetaCyc:RXN-10741","RHEA:26389"],"termid":"GO:0102076"}


id: _global:translates_to
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Inverse of translation _of.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translates_to","termid":"_global:translates_to"}


id: FYPO:0002917
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 4 of histone H3 does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K4 methylation during vegetative growth","termid":"FYPO:0002330"},{"relation_name":"is_a","term_name":"abolished histone methylation during vegetative growth","termid":"FYPO:0002565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0002494","FYPO:0001985","FYPO:0005447","FYPO:0002274"],"is_obsolete":false,"name":"abolished histone H3-K4 methylation during vegetative growth","synonyms":[{"name":"abolished histone H3 K4 methylation during vegetative growth","type":"exact"},{"name":"abolished histone H3-K4 methylation during mitotic cell cycle","type":"related"},{"name":"abolished histone H3K4me during vegetative growth","type":"exact"},{"name":"abolished histone lysine H3 K4 methylation during vegetative growth","type":"exact"},{"name":"histone H3-K4 methylation abolished during vegetative growth","type":"exact"},{"name":"histone H3-K4 methylation absent during vegetative growth","type":"exact"}],"termid":"FYPO:0002917"}


id: FYPO:0007094
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cells fuse for a longer time than normal during mating.","definition_xrefs":["PomBase:mah","PMID:31495586"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell fusion during mating","termid":"FYPO:0000412"},{"relation_name":"is_a","term_name":"abnormal membrane organization during vegetative growth","termid":"FYPO:0001351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000301","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased duration of cell fusion during mating","synonyms":[{"name":"increased duration of cell fusion during conjugation","type":"exact"},{"name":"increased duration of plasma membrane fusion involved in cytogamy","type":"exact"},{"name":"prolonged cell fusion during mating","type":"exact"}],"termid":"FYPO:0007094"}


id: SO:0000543
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000543 alternately_spliced_gene_encoding_greater_than_one_transcript (obsolete SO:0000543)","termid":"SO:0000543"}


id: MOD:00627
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:316"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2,5-dimethylpyrrole lysine from 2,5-hexanedione adduct","synonyms":[{"name":"(2S)-2-amino-6-(2,5-dimethylpyrrolidin-1-yl)hexanoic acid","type":"exact"},{"name":"2,5-dimethypyrrole","type":"related"},{"name":"6-(2,5-dimethylpyrrolidin-1-yl)norleucine","type":"exact"},{"name":"DimethylpyrroleAdduct","type":"related"}],"termid":"MOD:00627"}


id: MONDO:0017918
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"White matter hypoplasia-corpus callosum agenesis-intellectual disability syndrome is a very rare neurological condition. The few patients described in the medical literature were characterized by brain anomalies; an unusual face with broad nasal root, wide spaced eyes (hypertelorism) and a very small chin (micrognathia); failure to thrive; severe intellectual disability ;and lack of muscle tone (hypotonia). Exams of the brain showed a poor development (hypoplasia) of the pale part of the brain known as white matter, and an absent or abnormal corpus callosum (nerve fibers joining the two hemispheres of the brain). Only a few cases have being described. The cause is unknown but may be related to a disorder of axonal development. The described cases seem to be inherited in an autosomal recessive or X-linked way. Corpus callosum agenesis is one of the more frequent congenital malformations. It can be either asymptomatic or associated with intellectual disability, epilepsy, or psychiatric syndromes. It can be part of several genetic syndromes, such as Aicardi syndrome, Andermann syndrome and Apert syndrome, trisomies 13, 18 ; or result from metabolic causes; drugs (cocaine); or viral infection (influenza). Many patients with corpus callosum anomalies have other brain anomalies, including white matter hypoplasia. There is no information on specific treatment for this condition.","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"white matter hypoplasia-corpus callosum agenesis-intellectual disability syndrome","secondary_identifiers":["UMLS:C2931292","GARD:12488","MESH:C536701","Orphanet:3207","MEDGEN:419038"],"synonyms":[{"name":"Curatolo Cilio Pessagno syndrome","type":"related"},{"name":"Curatolo-Cilio-Pessagno syndrome","type":"exact"},{"name":"familial white matter hypoplasia, agenesis of the corpus callosum, intellectual disability and growth deficiency","type":"related"}],"termid":"MONDO:0017918","xrefs":{"Monarch":{"xref_id":"0017918"}}}


id: GO:1900379
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of asperthecin biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ketone biosynthetic process","termid":"GO:0010566"},{"relation_name":"is_a","term_name":"regulation of secondary metabolite biosynthetic process","termid":"GO:1900376"},{"relation_name":"regulates","term_name":"asperthecin biosynthetic process","termid":"GO:0036184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"regulation of asperthecin biosynthetic process","synonyms":[{"name":"regulation of asperthecin biosynthesis","type":"exact"},{"name":"regulation of asperthecin formation","type":"exact"},{"name":"regulation of asperthecin synthesis","type":"exact"}],"termid":"GO:1900379"}


id: FYPO:0005202
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the regulation of the mitotic cell cycle in response to rapamycin is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of mitotic cell cycle","termid":"FYPO:0000148"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000631","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal mitotic cell cycle regulation during cellular response to rapamycin","synonyms":[{"name":"abnormal cell cycle regulation during cellular response to rapamycin","type":"exact"},{"name":"abnormal cell cycle regulation during cellular response to rapamycin during mitotic cell cycle","type":"exact"},{"name":"abnormal mitotic cell cycle regulation during cellular response to rapamycin during vegetative growth","type":"exact"},{"name":"abnormal mitotic cell cycle regulation in response to rapamycin","type":"exact"}],"termid":"FYPO:0005202"}


id: PBO:0017413
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-precedes","termid":"PBO:0017413"}


id: PBO:0085943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; nearly identical to Sno2p; expression is induced before the diauxic shift and also in the absence of thiamin","termid":"PBO:0085943"}


id: GO:0051786
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: all-trans-13,14-dihydroretinol + A = all-trans-retinol + AH(2). Note that this reaction has only been observed to occur in the opposite direction.","definition_xrefs":["EC:1.3.99.23","RHEA:19193"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors","termid":"GO:0016627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"all-trans-retinol 13,14-reductase activity","secondary_identifiers":["KEGG_REACTION:R07163","MetaCyc:1.3.99.23-RXN","Reactome:R-HSA-8956427"],"synonyms":[{"name":"(13,14)-all-trans-retinol saturase activity","type":"exact"},{"name":"RetSat activity","type":"related"},{"name":"all-trans-13,14-dihydroretinol:acceptor 13,14-oxidoreductase activity","type":"exact"},{"name":"all-trans-retinol:all-trans-13,14-dihydroretinol saturase activity","type":"exact"},{"name":"retinol saturase activity","type":"related"}],"termid":"GO:0051786"}


id: PBO:0084836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial pyrimidine nucleotide transporter; imports pyrimidine nucleoside triphosphates and exports pyrimidine nucleoside monophosphates; member of the mitochondrial carrier family","termid":"PBO:0084836"}


id: PBO:0080326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 90 pseudogene","termid":"PBO:0080326"}


id: SO:0001452
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A positively charged, hydorophilic amino acid encoded by the codons CAT and CAC.","direct_ancestors":[{"relation_name":"is_a","term_name":"amino_acid","termid":"SO:0001237"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histidine","synonyms":[{"name":"H","type":"exact"},{"name":"His","type":"exact"}],"termid":"SO:0001452"}


id: GO:1905068
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of canonical Wnt signaling pathway involved in heart development.","definition_xrefs":["GOC:bc","GO_REF:0000058","GOC:BHF","GOC:BHF_miRNA","GOC:TermGenie","PMID:25034767"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of canonical Wnt signaling pathway involved in heart development (obsolete GO:1905068)","synonyms":[{"name":"activation of canonical Wnt receptor signaling pathway involved in heart development","type":"narrow"},{"name":"activation of canonical Wnt receptor signalling pathway involved in heart development","type":"narrow"},{"name":"activation of canonical Wnt signaling pathway involved in heart development","type":"narrow"},{"name":"activation of canonical Wnt-activated signaling pathway involved in heart development","type":"narrow"},{"name":"positive regulation of canonical Wnt receptor signaling pathway involved in heart development","type":"exact"},{"name":"positive regulation of canonical Wnt receptor signalling pathway involved in heart development","type":"exact"},{"name":"positive regulation of canonical Wnt-activated signaling pathway involved in heart development","type":"exact"},{"name":"up regulation of canonical Wnt receptor signaling pathway involved in heart development","type":"exact"},{"name":"up regulation of canonical Wnt receptor signalling pathway involved in heart development","type":"exact"},{"name":"up regulation of canonical Wnt signaling pathway involved in heart development","type":"exact"},{"name":"up regulation of canonical Wnt-activated signaling pathway involved in heart development","type":"exact"},{"name":"up-regulation of canonical Wnt receptor signaling pathway involved in heart development","type":"exact"},{"name":"up-regulation of canonical Wnt receptor signalling pathway involved in heart development","type":"exact"},{"name":"up-regulation of canonical Wnt signaling pathway involved in heart development","type":"exact"},{"name":"up-regulation of canonical Wnt-activated signaling pathway involved in heart development","type":"exact"},{"name":"upregulation of canonical Wnt receptor signaling pathway involved in heart development","type":"exact"},{"name":"upregulation of canonical Wnt receptor signalling pathway involved in heart development","type":"exact"},{"name":"upregulation of canonical Wnt signaling pathway involved in heart development","type":"exact"},{"name":"upregulation of canonical Wnt-activated signaling pathway involved in heart development","type":"exact"}],"termid":"GO:1905068"}


id: SO:0000059
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease.","definition_xrefs":["SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide_to_protein_binding_site","termid":"SO:0001654"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclease_binding_site","synonyms":[{"name":"nuclease binding site","type":"exact"}],"termid":"SO:0000059"}


id: PBO:0073744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 2 member 3","termid":"PBO:0073744"}


id: MONDO:0031952
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete genetic syndromic esophageal malformation (obsolete MONDO:0031952)","secondary_identifiers":["Orphanet:371445"],"termid":"MONDO:0031952","xrefs":{"Monarch":{"xref_id":"0031952"}}}


id: GO:1903873
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of DNA recombinase mediator complex assembly.","definition_xrefs":["PMID:18347097","GOC:rb","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex assembly","termid":"GO:0031333"},{"relation_name":"is_a","term_name":"regulation of DNA recombinase mediator complex assembly","termid":"GO:1903872"},{"relation_name":"negatively_regulates","term_name":"DNA recombinase mediator complex assembly","termid":"GO:1903871"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"negatively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"negative regulation of DNA recombinase mediator complex assembly","synonyms":[{"name":"down regulation of DNA recombinase mediator complex assembly","type":"exact"},{"name":"down regulation of DNA recombinase mediator complex formation","type":"exact"},{"name":"down-regulation of DNA recombinase mediator complex assembly","type":"exact"},{"name":"down-regulation of DNA recombinase mediator complex formation","type":"exact"},{"name":"downregulation of DNA recombinase mediator complex assembly","type":"exact"},{"name":"downregulation of DNA recombinase mediator complex formation","type":"exact"},{"name":"inhibition of DNA recombinase mediator complex assembly","type":"narrow"},{"name":"inhibition of DNA recombinase mediator complex formation","type":"narrow"},{"name":"negative regulation of DNA recombinase mediator complex formation","type":"exact"}],"termid":"GO:1903873"}


id: PBO:0039808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor 4","termid":"PBO:0039808"}


id: PBO:0076000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"saitohin","termid":"PBO:0076000"}


id: _global:produced_by
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"a produced_by b iff some process that occurs_in b has_output a.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"produced_by","secondary_identifiers":["RO:0003001"],"termid":"_global:produced_by"}


id: PBO:0064141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase N2","termid":"PBO:0064141"}


id: MONDO:0016483
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An intracranial aneurysm with a characteristic rounded shape; the most common form of cerebral aneurysm.","definition_xrefs":["DOID:0060228"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brain aneurysm","termid":"MONDO:0005291"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intracranial berry aneurysm","secondary_identifiers":["Orphanet:231160","icd11.foundation:59881644","SCTID:703226008","UMLS:C3839866","MEDGEN:825711","OMIMPS:105800","HP:0007029","GARD:17161"],"synonyms":[{"name":"aneurysm, intracranial berry","type":"exact"},{"name":"familial aneurysmal subarachnoid haemorrhage","type":"exact"},{"name":"familial aneurysmal subarachnoid hemorrhage","type":"exact"},{"name":"familial berry aneurysm","type":"exact"},{"name":"familial cerebral saccular aneurysm","type":"related"},{"name":"familial intracranial saccular aneurysm","type":"exact"},{"name":"saccular cerebral aneurysm","type":"exact"}],"termid":"MONDO:0016483","xrefs":{"Monarch":{"xref_id":"0016483"}}}


id: PBO:0028134
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_snoRNA_primary_transcript_level","termid":"PBO:0028134"}


id: GO:0014065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A series of reactions within the signal-receiving cell, mediated by the intracellular phosphatidylinositol 3-kinase (PI3K). Many cell surface receptor linked signaling pathways signal through PI3K to regulate numerous cellular functions.","definition_xrefs":["PMID:22525052","GOC:ef","Wikipedia:PI3K"],"gene_count":0,"genotype_count":0,"name":"obsolete phosphatidylinositol 3-kinase signaling (obsolete GO:0014065)","synonyms":[{"name":"PI 3-kinase cascade","type":"exact"},{"name":"PI3K cascade","type":"exact"},{"name":"PI3K signal transduction","type":"exact"},{"name":"PI3K signaling","type":"exact"},{"name":"phosphatidylinositol 3-kinase cascade","type":"related"},{"name":"phosphatidylinositol 3-kinase signal transduction","type":"exact"},{"name":"phosphoinositide 3-kinase cascade","type":"exact"}],"termid":"GO:0014065"}


id: MONDO:0001825
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign epithelial neoplasm characterized by a papillary growth pattern and a proliferation of neoplastic squamous cells without morphologic evidence of malignancy. Most frequently it arises in the oral cavity, nasopharynx, larynx, esophagus, vagina, and vulva.","definition_xrefs":["NCIT:C3712"],"direct_ancestors":[{"relation_name":"is_a","term_name":"papilloma","termid":"MONDO:0002363"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"squamous papilloma","secondary_identifiers":["DOID:139","EFO:1001970","ICDO:8052/0","UMLS:C0205874","MEDGEN:61470"],"synonyms":[{"name":"epidermoid cell papilloma","type":"exact"},{"name":"epidermoid papilloma","type":"exact"},{"name":"keratotic papilloma","type":"exact"},{"name":"papilloma, squamous cell, benign","type":"exact"},{"name":"squamous cell papilloma","type":"exact"},{"name":"squamous cell papilloma (morphologic abnormality)","type":"exact"},{"name":"squamous papilloma","type":"exact"}],"termid":"MONDO:0001825","xrefs":{"Monarch":{"xref_id":"0001825"}}}


id: FYPO:0001114
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular response phenotype in which the cellular response to M-factor is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular response to pheromone","termid":"FYPO:0001113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0000298"],"is_obsolete":false,"name":"normal cellular response to M-factor","termid":"FYPO:0001114"}


id: GO:0043374
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized T cell acquires specialized features of a mature CD8-positive, alpha-beta T cell.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CD8-positive, alpha-beta T cell activation","termid":"GO:0036037"},{"relation_name":"is_a","term_name":"alpha-beta T cell differentiation","termid":"GO:0046632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD8-positive, alpha-beta T cell differentiation","synonyms":[{"name":"CD8-positive, alpha-beta T cell development","type":"related"},{"name":"CD8-positive, alpha-beta T lymphocyte differentiation","type":"exact"},{"name":"CD8-positive, alpha-beta T-cell differentiation","type":"exact"},{"name":"CD8-positive, alpha-beta T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0043374"}


id: PBO:0038797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase domain 3A (pseudogene)","termid":"PBO:0038797"}


id: GO:0140953
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysyl27-[histone H3] + S-adenosyl-L-methionine = H+ + N6-methyl-L-lysyl27-[histone H3] + S-adenosyl-L-homocysteine. This reaction is the addition of a single methyl group to the unmethylated lysine residue at position 27 of histone H3, producing histone H3K27me.","definition_xrefs":["RHEA:60296"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3K27 methyltransferase activity","termid":"GO:0046976"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016741","GO:0008276","GO:0003674","GO:0016740","GO:0140096"],"is_obsolete":false,"name":"histone H3K27 monomethyltransferase activity","secondary_identifiers":["EC:2.1.1.369"],"synonyms":[{"name":"histone H3-K27 methylation","type":"broad"},{"name":"histone H3-K27 monomethylase activity","type":"exact"},{"name":"histone H3K27 methylation","type":"broad"},{"name":"histone H3K27 monomethylase activity","type":"exact"},{"name":"histone lysine N-monomethyltransferase activity (H3-K27 specific)","type":"exact"}],"termid":"GO:0140953"}


id: MONDO:0013297
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant limb-girdle muscular dystrophy type 1H (LGMD1H) is a subtype of autosomal dominant limb-girdle muscular dystrophy characterized by slowly progressive proximal muscular weakness initially affecting the lower limbs (and later involving the upper limbs), hypotrophy of upper and lower limb-girdle muscles, hyporeflexia, calf hypertrophy, and increased serum creatine kinase. There is no involvement of oculo-facial-bulbar muscles and cardiac muscle.","definition_xrefs":["Orphanet:238755"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy, limb-girdle, autosomal dominant","termid":"MONDO:0015151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005336"],"is_obsolete":false,"name":"autosomal dominant limb-girdle muscular dystrophy type 1H","secondary_identifiers":["MEDGEN:462136","UMLS:C3150786","OMIM:613530","DOID:0110303","GARD:12532"],"synonyms":[{"name":"LGMD1H","type":"exact"},{"name":"limb-girdle muscular dystrophy type 1H","type":"related"},{"name":"muscular dystrophy limb-girdle type 1H","type":"exact"},{"name":"muscular dystrophy, limb-girdle, type 1H","type":"related"}],"termid":"MONDO:0013297","xrefs":{"Monarch":{"xref_id":"0013297"}}}


id: PBO:0004819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit l44 (predicted)","termid":"PBO:0004819"}


id: PATO:0000026
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000026 carbohydrate composition (obsolete PATO:0000026)","termid":"PATO:0000026"}


id: PBO:0041503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 12 open reading frame 76","termid":"PBO:0041503"}


id: PBO:0013766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-actin capping protein beta subunit Acp2","termid":"PBO:0013766"}


id: FYPO:0004121
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transport phenotype observed in the vegetative growth phase of the life cycle in which the import of protein into the nucleus is normal (i.e. indistinguishable from wild type). Import of all proteins or a specific protein may be assayed.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal nuclear import","termid":"FYPO:0000516"},{"relation_name":"is_a","term_name":"normal protein localization to nucleus during vegetative growth","termid":"FYPO:0000838"},{"relation_name":"is_a","term_name":"normal intracellular protein transport during vegetative growth","termid":"FYPO:0005397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000138","FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal protein import into nucleus during vegetative growth","synonyms":[{"name":"normal nucleocytoplasmic protein import during vegetative growth","type":"related"},{"name":"normal protein import into nucleus during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004121"}


id: PBO:0004947
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIM23 translocase complex subunit Tim21 (predicted)","termid":"PBO:0004947"}


id: GO:1905280
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of retrograde transport, endosome to Golgi.","definition_xrefs":["GOC:PARL","GOC:TermGenie","GOC:bf","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intracellular transport","termid":"GO:0032387"},{"relation_name":"is_a","term_name":"regulation of retrograde transport, endosome to Golgi","termid":"GO:1905279"},{"relation_name":"negatively_regulates","term_name":"retrograde transport, endosome to Golgi","termid":"GO:0042147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of retrograde transport, endosome to Golgi","synonyms":[{"name":"down regulation of retrograde (endosome to Golgi) transport","type":"exact"},{"name":"down regulation of retrograde transport, endosome to Golgi","type":"exact"},{"name":"down-regulation of retrograde (endosome to Golgi) transport","type":"exact"},{"name":"down-regulation of retrograde transport, endosome to Golgi","type":"exact"},{"name":"downregulation of retrograde (endosome to Golgi) transport","type":"exact"},{"name":"downregulation of retrograde transport, endosome to Golgi","type":"exact"},{"name":"inhibition of retrograde (endosome to Golgi) transport","type":"narrow"},{"name":"inhibition of retrograde transport, endosome to Golgi","type":"narrow"},{"name":"negative regulation of retrograde (endosome to Golgi) transport","type":"exact"}],"termid":"GO:1905280"}


id: MONDO:0020327
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete classic Hodgkin lymphoma, nodular sclerosis type (obsolete MONDO:0020327)","termid":"MONDO:0020327","xrefs":{"Monarch":{"xref_id":"0020327"}}}


id: GO:0042948
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of salicin (saligenin-beta-D-glucopyranoside), a glucoside of o-hydroxybenzylalcohol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucoside transport","termid":"GO:0015759"},{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"salicin transport","termid":"GO:0042948"}


id: GO:0050239
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-(4-amino-2-methylpyrimid-5-ylmethyl)-3-(beta-hydroxyethyl)-2-methylpyridinium bromide + H2O = 1-(4-hydroxy-2-methylpyrimid-5-ylmethyl)-3-(beta-hydroxyethyl)-2-methylpyridinium bromide + NH3.","definition_xrefs":["MetaCyc:PYRITHIAMIN-DEAMINASE-RXN","EC:3.5.4.20"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0016810","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"pyrithiamine deaminase activity","secondary_identifiers":["RHEA:14537"],"synonyms":[{"name":"1-(4-amino-2-methylpyrimid-5-ylmethyl)-3-(beta-hydroxyethyl)-2-methylpyridinium-bromide aminohydrolase activity","type":"related"}],"termid":"GO:0050239"}


id: MONDO:0005738
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A parasitic infection caused by tapeworm larvae of Echinococcus. It affects livestock and humans. It is characterized by the formation of hydatid cysts mainly in the liver, lungs, spleen, and kidneys. Rupture of the cysts may lead to shock.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Cestode infectious disease","termid":"MONDO:0042488"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"echinococcosis","secondary_identifiers":["DOID:1496","SCTID:74942003","UMLS:C0013502","ICD9:122.9","MESH:D004443","NCIT:C84682","EFO:0007245","ICD9:122","MEDGEN:4438","icd11.foundation:1456802165","ICD10CM:B67"],"synonyms":[{"name":"Echinococcus caused disease or disorder","type":"exact"},{"name":"Echinococcus disease or disorder","type":"exact"},{"name":"Echinococcus infectious disease","type":"exact"},{"name":"echinococcal disease","type":"narrow"},{"name":"echinococciasis","type":"related"},{"name":"echinococcosis","type":"exact"},{"name":"echinococcosis of liver","type":"exact"},{"name":"echinococcosis, unspecified, of liver","type":"narrow"},{"name":"echinococcus disease","type":"related"},{"name":"hepatic echinococcosis","type":"narrow"},{"name":"hydatid disease","type":"narrow"},{"name":"hydatidosis","type":"narrow"},{"name":"liver echinococcus","type":"exact"},{"name":"pulmonary echinococcosis","type":"narrow"}],"termid":"MONDO:0005738","xrefs":{"Monarch":{"xref_id":"0005738"}}}


id: GO:0033575
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid at the surface of a cell.","definition_xrefs":["GOC:pr","GOC:mah","PMID:12042244"],"gene_count":0,"genotype_count":0,"name":"obsolete protein glycosylation at cell surface (obsolete GO:0033575)","synonyms":[{"name":"protein amino acid glycosylation at cell surface","type":"exact"}],"termid":"GO:0033575"}


id: PBO:0050216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 33","termid":"PBO:0050216"}


id: GO:0051075
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosylmethionine + 7-(aminomethyl)-7-deazaguanosine-tRNA = adenine + methionine + epoxyqueuosine-tRNA. 7-(aminomethyl)-7-deazaguanosine-tRNA is also known as preQ1-tRNA, and epoxyqueuosine-tRNA as oQ-tRNA.","definition_xrefs":["PMID:12731872"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosyltransferase activity","termid":"GO:0016757"},{"relation_name":"is_a","term_name":"isomerase activity","termid":"GO:0016853"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0003674","GO:0140101","GO:0016853","GO:0016757","GO:0016740","GO:0003824","GO:0140098"],"is_obsolete":false,"name":"S-adenosylmethionine:tRNA ribosyltransferase-isomerase activity","secondary_identifiers":["RHEA:32155","EC:2.4.99.17"],"synonyms":[{"name":"S-adenosyl methionine:tRNA ribosyltransferase-isomerase activity","type":"exact"}],"termid":"GO:0051075"}


id: MONDO:0019673
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"postaxial polydactyly of fingers","termid":"MONDO:0017426"},{"relation_name":"is_a","term_name":"postaxial polydactyly","termid":"MONDO:0020927"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"postaxial polydactyly type A","secondary_identifiers":["SCTID:715704001","icd11.foundation:476330894","MEDGEN:854350","Orphanet:93334","GARD:16817","HP:0005696","UMLS:C3887487"],"synonyms":[{"name":"PAPA","type":"exact"},{"name":"postaxial polydactyly type A","type":"exact"},{"name":"postaxial polydactyly type A (disease)","type":"exact"}],"termid":"MONDO:0019673","xrefs":{"Monarch":{"xref_id":"0019673"}}}


id: GO:1901046
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of oviposition.","definition_xrefs":["GOC:TermGenie","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of egg-laying behavior","termid":"GO:0046662"},{"relation_name":"is_a","term_name":"positive regulation of behavior","termid":"GO:0048520"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"egg-laying behavior","termid":"GO:0018991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of egg-laying behavior","synonyms":[{"name":"activation of egg laying","type":"broad"},{"name":"activation of egg-laying","type":"broad"},{"name":"activation of oviposition","type":"narrow"},{"name":"positive regulation of egg laying","type":"broad"},{"name":"positive regulation of egg-laying","type":"broad"},{"name":"positive regulation of oviposition","type":"exact"},{"name":"up regulation of egg laying","type":"broad"},{"name":"up regulation of egg-laying","type":"broad"},{"name":"up regulation of oviposition","type":"exact"},{"name":"up-regulation of egg laying","type":"broad"},{"name":"up-regulation of egg-laying","type":"broad"},{"name":"up-regulation of oviposition","type":"exact"},{"name":"upregulation of egg laying","type":"broad"},{"name":"upregulation of egg-laying","type":"broad"},{"name":"upregulation of oviposition","type":"exact"}],"termid":"GO:1901046"}


id: MONDO:0010421
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"X-linked agammaglobulinemia (XLA) is a clinically variable form of isolated agammaglobulinemia, an inherited immunodeficiency disorder, and is characterized in affected males by recurrent bacterial infections during infancy.","definition_xrefs":["Orphanet:47"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isolated agammaglobulinemia","termid":"MONDO:0016462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"Bruton-type agammaglobulinemia","secondary_identifiers":["GARD:1033","NANDO:1200343","MedDRA:10060360","DOID:14179","NANDO:2200716","NCIT:C3822","OMIM:300755","MESH:C537409","SCTID:65880007","UMLS:C0221026","MEDGEN:65123"],"synonyms":[{"name":"BTK deficiency","type":"exact"},{"name":"BTK-deficiency","type":"exact"},{"name":"Bruton agammaglobulinemia tyrosine kinase deficiency","type":"exact"},{"name":"Bruton type agammaglobulinemia","type":"exact"},{"name":"Bruton's Sex-linked agammaglobulinemia","type":"exact"},{"name":"Bruton's X-linked agammaglobulinemia","type":"exact"},{"name":"Bruton's agammaglobulinaemia","type":"exact"},{"name":"Bruton's agammaglobulinemia","type":"related"},{"name":"Bruton's type agammaglobulinemia","type":"exact"},{"name":"Bruton-type agammaglobulinemia","type":"exact"},{"name":"X-linked agammaglobulinemia","type":"exact"},{"name":"XLA","type":"related"},{"name":"agammaglobulinemia, BTK","type":"related"},{"name":"agammaglobulinemia, Bruton tyrosine kinase","type":"related"},{"name":"agammaglobulinemia, X-linked","type":"related"},{"name":"agammaglobulinemia, X-linked 1, X-linked recessive","type":"exact"},{"name":"agammaglobulinemia, X-linked, type 1","type":"related"},{"name":"hypogammaglobulinemia, X-linked","type":"related"},{"name":"immunodeficiency 1","type":"related"}],"termid":"MONDO:0010421","xrefs":{"Monarch":{"xref_id":"0010421"}}}


id: GO:0031644
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of a neurophysiological process, an organ system process carried out by any of the organs or tissues of the nervous system.","definition_xrefs":["GOC:mah","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of system process","termid":"GO:0044057"},{"relation_name":"regulates","term_name":"nervous system process","termid":"GO:0050877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of nervous system process","synonyms":[{"name":"regulation of neurological process","type":"exact"},{"name":"regulation of neurological system process","type":"exact"},{"name":"regulation of neurophysiological process","type":"exact"}],"termid":"GO:0031644"}


id: PBO:0006186
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_upstream_or_downstream_target","termid":"PBO:0006186"}


id: PBO:0034146
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_neoteny_relationship_with","termid":"PBO:0034146"}


id: FYPO:0004231
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of methylated histone binding by a gene product (usually a protein) in a mutant is abnormal. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone binding","termid":"FYPO:0007157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000702","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"abnormal methylated histone binding","termid":"FYPO:0004231"}


id: MONDO:0012327
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal recessive nonsyndromic deafness that has material basis in variation in the chromosome region 18p11.32-p11.31.","definition_xrefs":["PMID:15637723","DOID:0110503"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive nonsyndromic hearing loss 46","secondary_identifiers":["OMIM:609647","UMLS:C1864815","GARD:22615","MESH:C566459","MEDGEN:355302"],"synonyms":[{"name":"DFNB46","type":"narrow"},{"name":"autosomal recessive deafness 46","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness 46","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness type 46","type":"narrow"},{"name":"deafness, autosomal recessive 46","type":"narrow"}],"termid":"MONDO:0012327","xrefs":{"Monarch":{"xref_id":"0012327"}}}


id: MONDO:0005758
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The state of being a eunuch, a male without testes or whose testes failed to develop. It is characterized by the lack of mature male germ cells and testicular hormones.","definition_xrefs":["MESH:D005058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypogonadism","termid":"MONDO:0002146"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eunuchism","secondary_identifiers":["MEDGEN:65949","NCIT:C131195","EFO:0007266","SCTID:267403002","UMLS:C0238117","DOID:5003","ICD9:257.2"],"synonyms":[{"name":"Male hypergonadotropic hypogonadism","type":"related"},{"name":"Primary testicular failure","type":"exact"},{"name":"hypergonadotropic hypogonadism (Male)","type":"related"}],"termid":"MONDO:0005758","xrefs":{"Monarch":{"xref_id":"0005758"}}}


id: PBO:0030271
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_negative_regulation_of_mitotic_DNA_replication_initiation_resulting_in_slow_rereplication","termid":"PBO:0030271"}


id: PBO:0005182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"survivin, Bir1","termid":"PBO:0005182"}


id: MONDO:0011568
data:
  {"annotated_genes":["SJAG_04295","SJAG_05182","SJAG_04706","SJAG_05175","SJAG_02139"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87238,87239,87240,87241,87242],"is_not":false,"summary":null,"term":"MONDO:0011568"}]},"cv_name":"mondo","definition":"Any autosomal dominant nonsyndromic deafness in which the cause of the disease is a mutation in the SLC17A8 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02139":null,"SJAG_04295":null,"SJAG_04706":null,"SJAG_05175":null,"SJAG_05182":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0019497"],"is_obsolete":false,"name":"autosomal dominant nonsyndromic hearing loss 25","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C1854158","MEDGEN:344221","MESH:C565319","OMIM:605583","GARD:18112","DOID:0110555"],"synonyms":[{"name":"DFNA25","type":"narrow"},{"name":"SLC17A8 autosomal dominant nonsyndromic deafness","type":"narrow"},{"name":"autosomal dominant deafness 25","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness 25","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness caused by mutation in SLC17A8","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness type 25","type":"narrow"},{"name":"deafness, autosomal dominant 25","type":"narrow"},{"name":"deafness, autosomal dominant type 25","type":"narrow"}],"termid":"MONDO:0011568","terms_by_termid":{"MONDO:0011568":null},"xrefs":{"Monarch":{"xref_id":"0011568"}}}


id: MONDO:0003565
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An epithelial neoplasm of the urethra, which is morphologically characterized by the presence of a villous architectural pattern.","definition_xrefs":["NCIT:C39872"],"direct_ancestors":[{"relation_name":"is_a","term_name":"villous adenoma","termid":"MONDO:0000502"},{"relation_name":"is_a","term_name":"urethra neoplasm","termid":"MONDO:0021239"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urethral villous adenoma","secondary_identifiers":["UMLS:C1519828","DOID:5643","MEDGEN:274360"],"synonyms":[{"name":"urethra villous adenoma","type":"exact"},{"name":"urethral villous adenoma","type":"exact"}],"termid":"MONDO:0003565","xrefs":{"Monarch":{"xref_id":"0003565"}}}


id: FYPO:0008285
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of 5-diphospho-1D-myo-inositol 1,2,3,4,6-pentakisphosphate (5-IP7) is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:pc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular myo-inositol level","termid":"FYPO:0008284"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal cellular 5-IP7 level","termid":"FYPO:0008285"}


id: GO:0010118
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata).","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"stomatal movement","termid":"GO:0010118"}


id: PBO:0091247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-1,2-galactosyltransferase Gmh1","termid":"PBO:0091247"}


