# terms

id: GO:0042739
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of a drug that has originated internally within the cell or organism.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete endogenous drug catabolic process (obsolete GO:0042739)","synonyms":[{"name":"endogenous drug breakdown","type":"exact"},{"name":"endogenous drug catabolism","type":"exact"},{"name":"endogenous drug degradation","type":"exact"}],"termid":"GO:0042739"}


id: PBO:0071966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 kinase A5","termid":"PBO:0071966"}


id: GO:0015624
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + ferric-enterobactin(out) = ADP + phosphate + ferric-enterobactin(in).","definition_xrefs":["RHEA:58492"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transmembrane transporter activity","termid":"GO:0008514"},{"relation_name":"is_a","term_name":"iron chelate transmembrane transporter activity","termid":"GO:0015603"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"ABC-type ferric-enterobactin transporter activity","secondary_identifiers":["EC:7.2.2.17","MetaCyc:ABC-10-RXN"],"synonyms":[{"name":"ATP-dependent ferric-enterobactin transmembrane transporter activity","type":"exact"},{"name":"ATPase-coupled ferric-enterobactin transmembrane transporter activity","type":"related"},{"name":"ferric-enterobactin ABC transporter","type":"exact"},{"name":"ferric-enterobactin porter activity","type":"broad"},{"name":"ferric-enterobactin-transporting ATPase activity","type":"related"}],"termid":"GO:0015624"}


id: PBO:0038836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAMTS7 pseudogene 3","termid":"PBO:0038836"}


id: PBO:0044730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD/H-box helicase 12, pseudogene","termid":"PBO:0044730"}


id: PBO:0034636
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_kinetochore_during_vegetative_growth","termid":"PBO:0034636"}


id: PBO:0057396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548f-4","termid":"PBO:0057396"}


id: PBO:0070730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10a","termid":"PBO:0070730"}


id: PBO:0054420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1816","termid":"PBO:0054420"}


id: FYPO:0007994
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the cohesion protection during anaphase of the first meiotic nuclear division is normal.","definition_xrefs":["PomBase:mlr","PMID:18716626"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiotic sister chromatid cohesion","termid":"FYPO:0002094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal meiotic sister chromatid cohesion protection during meiotic anaphase I","termid":"FYPO:0007994"}


id: PBO:0064009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 43","termid":"PBO:0064009"}


id: GO:2000275
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of oxidative phosphorylation uncoupler activity.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of oxidative phosphorylation uncoupler activity (obsolete GO:2000275)","synonyms":[{"name":"regulation of mitochondrial uncoupling protein activity","type":"related"},{"name":"regulation of uncoupling protein activity","type":"related"}],"termid":"GO:2000275"}


id: PBO:0046008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 1 pseudogene 3","termid":"PBO:0046008"}


id: MOD:00428
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces two hydrogen atoms with two hydroxyl groups.","definition_xrefs":["Unimod:425","PubMed:12686488"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydroxylated residue","termid":"MOD:00677"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydroxylated residue","synonyms":[{"name":"Dioxidation","type":"related"},{"name":"Hy2Res","type":"exact"},{"name":"dihydroxy","type":"related"}],"termid":"MOD:00428"}


id: PBO:0011181
data:
  {"annotation_feature_type":"gene","cv_name":"feature_cvtermprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"curator","termid":"PBO:0011181"}


id: GO:0031922
data:
  {"annotated_genes":["SJAG_02962","SJAG_02152","SJAG_03652","SJAG_03808"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91911,91912,119317,120618],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903091"}]},"cv_name":"biological_process","definition":"The directed movement of pyridoxamine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Pyridoxamine, 4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transport","termid":"GO:0015695"},{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"},{"relation_name":"is_a","term_name":"vitamin B6 transport","termid":"GO:0031919"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02152":null,"SJAG_02962":null,"SJAG_03652":null,"SJAG_03808":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"pyridoxamine transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0031922","terms_by_termid":{"GO:1903091":null}}


id: GO:0023003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Migration of one of the four nuclei at each pole of the eight-nucleate embryo sac, to the center of the cell.","definition_xrefs":["ISBN:047186840X","GOC:jid","GOC:mtg_plant"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryo sac nuclear migration","termid":"GO:0009562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"nuclear migration to the embryo sac center","synonyms":[{"name":"nuclear migration to the embryo sac centre","type":"exact"},{"name":"nuclear migration to the female gametophyte center","type":"exact"},{"name":"nuclear migration to the female gametophyte centre","type":"exact"},{"name":"nuclear migration to the megagametophyte center","type":"exact"},{"name":"nuclear migration to the megagametophyte centre","type":"exact"},{"name":"nucleus migration to the female gametophyte center","type":"exact"},{"name":"nucleus migration to the female gametophyte centre","type":"exact"}],"termid":"GO:0023003"}


id: MONDO:0020805
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm composed of basal cells that remains localized and does not metastasize to other anatomic sites.","definition_xrefs":["NCIT:C4743"],"direct_ancestors":[{"relation_name":"is_a","term_name":"basal cell neoplasm","termid":"MONDO:0020799"},{"relation_name":"is_a","term_name":"benign epithelial neoplasm","termid":"MONDO:0036976"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign basal cell neoplasm","secondary_identifiers":["MEDGEN:96885","UMLS:C0474802"],"synonyms":[{"name":"benign basal cell tumor","type":"exact"},{"name":"benign basal cell tumour","type":"exact"}],"termid":"MONDO:0020805","xrefs":{"Monarch":{"xref_id":"0020805"}}}


id: PBO:0076717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor 24","termid":"PBO:0076717"}


id: MONDO:0004405
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenocarcinoma arising from Barrett metaplastic epithelium in the esophagus. There is evidence supporting the idea that the Barrett adenocarcinomas develop through a stepwise progression through intestinal metaplastic epithelium to epithelial dysplasia to malignancy. Adenocarcinomas arising in the setting of Barrett esophagus are typically papillary and/or tubular. In terms of grading, they are well or moderately differentiated adenocarcinomas. -- 2002","definition_xrefs":["NCIT:C7027"],"direct_ancestors":[{"relation_name":"is_a","term_name":"esophageal adenocarcinoma","termid":"MONDO:0005028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"Barrett adenocarcinoma","secondary_identifiers":["icd11.foundation:1934528268","SCTID:721617001","MEDGEN:272350","DOID:7941","UMLS:C1332460","EFO:1001939"],"synonyms":[{"name":"Barrett adenocarcinoma","type":"exact"},{"name":"Barrett's adenocarcinoma","type":"exact"},{"name":"adenocarcinoma arising in Barrett's mucosa","type":"exact"}],"termid":"MONDO:0004405","xrefs":{"Monarch":{"xref_id":"0004405"}}}


id: SO:0000506
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene, one J-gene and one C-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"D_gene_segment","termid":"SO:0000458"},{"relation_name":"has_part","term_name":"J_gene_segment","termid":"SO:0000470"},{"relation_name":"has_part","term_name":"C_gene_segment","termid":"SO:0000478"},{"relation_name":"has_part","term_name":"DJ_gene_segment","termid":"SO:0000572"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D_DJ_J_C_cluster","synonyms":[{"name":"D DJ J C cluster","type":"exact"},{"name":"D-(DJ)-J-C-CLUSTER","type":"exact"}],"termid":"SO:0000506"}


id: GO:0043174
data:
  {"annotated_genes":["SJAG_03096","SJAG_00134","SJAG_01781","SJAG_03881","SJAG_05029","SJAG_04264","SJAG_02179","SJAG_01070","SJAG_01859","SJAG_06634"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100367,100368],"is_not":false,"summary":null,"term":"GO:0043174"},{"annotations":[118682],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006169"},{"annotations":[71590],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006190"},{"annotations":[62491,95532,75121,67824],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006166"},{"annotations":[99520,115655],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043097"}]},"cv_name":"biological_process","definition":"Any process which produces a nucleotide, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose (a deoxyribonucleotide), from derivatives of it without de novo synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside biosynthetic process","termid":"GO:0009163"},{"relation_name":"is_a","term_name":"metabolic compound salvage","termid":"GO:0043094"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00134":null,"SJAG_01070":null,"SJAG_01781":null,"SJAG_01859":null,"SJAG_02179":null,"SJAG_03096":null,"SJAG_03881":null,"SJAG_04264":null,"SJAG_05029":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"nucleoside salvage","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null},"termid":"GO:0043174","terms_by_termid":{"GO:0006166":null,"GO:0006169":null,"GO:0006190":null,"GO:0043097":null,"GO:0043174":null}}


id: GO:0102820
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: norbixin + S-adenosyl-L-methionine = bixin + S-adenosyl-L-homocysteine.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete norbixin methyltransferase activity (obsolete GO:0102820)","termid":"GO:0102820"}


id: PBO:0030513
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_purvalanol_A","termid":"PBO:0030513"}


id: MONDO:0004581
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete localized scleroderma (obsolete MONDO:0004581)","termid":"MONDO:0004581","xrefs":{"Monarch":{"xref_id":"0004581"}}}


id: GO:0021906
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the formation of the hindbrain-spinal cord boundary.","definition_xrefs":["GOC:jid","GOC:dph","GOC:cls","PMID:11262869","GOC:dgh","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formation of anatomical boundary","termid":"GO:0048859"},{"relation_name":"part_of","term_name":"rostrocaudal neural tube patterning","termid":"GO:0021903"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hindbrain-spinal cord boundary formation","termid":"GO:0021906"}


id: PBO:0080411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS39 subunit of HOPS complex","termid":"PBO:0080411"}


id: PBO:0043601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collectin subfamily member 10","termid":"PBO:0043601"}


id: GO:0034503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a protein is transported to, or maintained at, the rDNA repeats on a chromosome in the nucleolus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to chromosome","termid":"GO:0034502"},{"relation_name":"part_of","term_name":"nucleolus organization","termid":"GO:0007000"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to nucleolar rDNA repeats","synonyms":[{"name":"condensin localization to nucleolar rDNA repeats","type":"narrow"},{"name":"protein localisation to nucleolar rDNA repeats","type":"exact"}],"termid":"GO:0034503"}


id: SO:0001534
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A polypeptide region that targets a polypeptide to the nuclear rim.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide_localization_signal","termid":"SO:0001527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"nuclear_rim_localization_signal","secondary_identifiers":["PMID:16027110"],"synonyms":[{"name":"nuclear rim localization signal","type":"related"}],"termid":"SO:0001534"}


id: GO:0030997
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the extent to which the two centrioles within a centrosome remain tightly paired; may be mediated by the assembly and disassembly of a proteinaceous linker.","definition_xrefs":["PMID:11076968"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"part_of","term_name":"centrosome cycle","termid":"GO:0007098"},{"relation_name":"regulates","term_name":"centriole-centriole cohesion","termid":"GO:0010457"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0000226"}],"interesting_parent_ids":["GO:0007010","GO:0008150","GO:0000226","GO:0007049"],"is_obsolete":false,"name":"regulation of centriole-centriole cohesion","termid":"GO:0030997"}


id: FYPO:0006565
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a normal proportion of cells in the population remains viable under conditions of phosphate starvation.","definition_xrefs":["PomBase:mah","PMID:9372444"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"},{"relation_name":"is_a","term_name":"cell population viability","termid":"FYPO:0002057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000257","FYPO:0002057"],"is_obsolete":false,"name":"normal viability upon phosphate starvation","synonyms":[{"name":"normal cell population viability upon phosphate starvation","type":"exact"}],"termid":"FYPO:0006565"}


id: PBO:0031670
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_transport","termid":"PBO:0031670"}


id: GO:0003263
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of cardioblasts, resulting in the expansion of the population in the heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell proliferation involved in heart morphogenesis","termid":"GO:0061323"},{"relation_name":"part_of","term_name":"heart formation","termid":"GO:0060914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardioblast proliferation","termid":"GO:0003263"}


id: GO:0010425
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The covalent transfer of a methyl group, to C-5 or N-4, of a cytosine located within a CNG sequence in a DNA molecule. N stands for any nucleotide.","definition_xrefs":["GOC:dph","GOC:tb","PMID:17239600"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA methylation on cytosine within a CNG sequence (obsolete GO:0010425)","synonyms":[{"name":"cytosine methylation within a CNG sequence","type":"exact"}],"termid":"GO:0010425"}


id: GO:0070189
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving kynurenine, the amino acid 3-(2-aminobenzoyl)-alanine.","definition_xrefs":["GOC:mah","GOC:rph","CHEBI:28683"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"},{"relation_name":"is_a","term_name":"alpha-amino acid metabolic process","termid":"GO:1901605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"kynurenine metabolic process","synonyms":[{"name":"kynurenine metabolism","type":"exact"}],"termid":"GO:0070189"}


id: GO:0102443
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a (2S)-2-hydroxycarboxylate + NAD+ = a 2-oxocarboxylate + NADH + H+.","definition_xrefs":["RHEA:34555"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"L-2-hydroxycarboxylate dehydrogenase (NAD+) activity","secondary_identifiers":["MetaCyc:RXN-13927","EC:1.1.1.337"],"termid":"GO:0102443"}


id: GO:0047187
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: deacetyl-[citrate-oxaloacetate-lyase ((pro-3S)-CH(2)COO(-)-acetate)] + S-acetylphosphopantetheine = [citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO(-)-acetate)] + pantetheine 4'-phosphate.","definition_xrefs":["EC:2.3.1.49","MetaCyc:2.3.1.49-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-acetyltransferase activity","termid":"GO:0016418"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0140096","GO:0016746","GO:0016740"],"is_obsolete":false,"name":"deacetyl-[citrate-(pro-3S)-lyase] S-acetyltransferase activity","secondary_identifiers":["RHEA:20393"],"synonyms":[{"name":"S-acetyl phosphopantetheine:deacetyl citrate lyase S-acetyltransferase activity","type":"related"},{"name":"S-acetylphosphopantetheine:deacetyl-citrate-oxaloacetate-lyase((pro-3S)-CH2COO-rightacetate)S-acetyltransferase activity","type":"related"},{"name":"deacetyl-citrate-(pro-3S)-lyase S-acetyltransferase activity","type":"related"},{"name":"deacetyl-citrate-(pro-3S)-lyase acetyltransferase activity","type":"related"}],"termid":"GO:0047187"}


id: PR:O13931
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- atp18 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13931"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase subunit J, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23C4.11","synonyms":[{"name":"Spom972h-atp18","type":"exact"}],"termid":"PR:O13931"}


id: MONDO:0016601
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Adult-onset citrullinemia type I is a form of citrullinemia type I characterized clinically by adult onset of symptoms including variable hyperammonemia and less striking neurological findings which may include intense headache, scotomas, migraine-like episodes, ataxia, slurred speech, lethargy and drowsiness. Serious increased intracranial pressure may occur.","definition_xrefs":["Orphanet:247573"],"direct_ancestors":[{"relation_name":"is_a","term_name":"citrullinemia type I","termid":"MONDO:0008988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"adult-onset citrullinemia type I","secondary_identifiers":["GARD:20660","NANDO:2201095"],"synonyms":[{"name":"adult-onset citrullinemia type 1","type":"exact"},{"name":"late-onset citrullinemia type 1","type":"exact"},{"name":"late-onset citrullinemia type I","type":"exact"}],"termid":"MONDO:0016601","xrefs":{"Monarch":{"xref_id":"0016601"}}}


id: PR:Q9P7J5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATPase family AAA domain-containing protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04505","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized AAA domain-containing protein C24B10.10c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC24B10.10c","secondary_identifiers":["UniProtKB:Q9P7J5"],"synonyms":[{"name":"Spom972h-ATAD1","type":"exact"}],"termid":"PR:Q9P7J5"}


id: PBO:0045468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dopamine receptor D5","termid":"PBO:0045468"}


id: MONDO:0029131
data:
  {"annotated_genes":["SJAG_04472","SJAG_04656"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88092,88093],"is_not":false,"summary":null,"term":"MONDO:0029131"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04472":null,"SJAG_04656":null},"genotype_count":0,"is_obsolete":false,"name":"peripheral neuropathy, autosomal recessive, with or without impaired intellectual development","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4748283","OMIM:618124","MEDGEN:1648480"],"synonyms":[{"name":"PNRIID","type":"related"},{"name":"peripheral neuropathy, autosomal recessive, with or without impaired intellectual development","type":"exact"}],"termid":"MONDO:0029131","terms_by_termid":{"MONDO:0029131":null},"xrefs":{"Monarch":{"xref_id":"0029131"}}}


id: GO:1901953
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of anterograde dense core granule transport.","definition_xrefs":["GOC:kmv","GOC:TermGenie","PMID:23358451"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of vesicle transport along microtubule","termid":"GO:1901610"},{"relation_name":"is_a","term_name":"regulation of anterograde dense core granule transport","termid":"GO:1901951"},{"relation_name":"is_a","term_name":"positive regulation of dense core granule transport","termid":"GO:1904811"},{"relation_name":"positively_regulates","term_name":"anterograde neuronal dense core vesicle transport","termid":"GO:1990048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of anterograde dense core granule transport","synonyms":[{"name":"activation of anterograde dense core granule transport","type":"narrow"},{"name":"up regulation of anterograde dense core granule transport","type":"exact"},{"name":"up-regulation of anterograde dense core granule transport","type":"exact"},{"name":"upregulation of anterograde dense core granule transport","type":"exact"}],"termid":"GO:1901953"}


id: MONDO:0015269
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Symmetrical thalamic calcifications are clinically distinguished by a low Apgar score, spasticity or marked hypotonia, weak or absent cry, poor feeding, and facial diplegia or weakness.","definition_xrefs":["Orphanet:1314"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder","termid":"MONDO:0005071"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"symmetrical thalamic calcifications","secondary_identifiers":["SCTID:719164000","UMLS:C4304914","MEDGEN:930583","GARD:5070"],"synonyms":[{"name":"bilateral symmetrical thalamic gliosis","type":"exact"}],"termid":"MONDO:0015269","xrefs":{"Monarch":{"xref_id":"0015269"}}}


id: GO:0006189
data:
  {"annotated_genes":["SJAG_02364","SJAG_01814","SJAG_01081","SJAG_02850","SJAG_04681","SJAG_03140","SJAG_01661","SJAG_03355"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57133,58273,60487,65365,66731,71601,73275,78446],"is_not":false,"summary":null,"term":"GO:0006189"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.","definition_xrefs":["GOC:mah","ISBN:0716720094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"IMP biosynthetic process","termid":"GO:0006188"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01081":null,"SJAG_01661":null,"SJAG_01814":null,"SJAG_02364":null,"SJAG_02850":null,"SJAG_03140":null,"SJAG_03355":null,"SJAG_04681":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"'de novo' IMP biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null},"synonyms":[{"name":"'de novo' IMP anabolism","type":"exact"},{"name":"'de novo' IMP biosynthesis","type":"exact"},{"name":"'de novo' IMP formation","type":"exact"},{"name":"'de novo' IMP synthesis","type":"exact"},{"name":"'de novo' purine biosynthesis","type":"broad"},{"name":"'de novo' purine biosynthetic process","type":"broad"}],"termid":"GO:0006189","terms_by_termid":{"GO:0006189":null}}


id: FYPO:0003633
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which U1 snRNP binding by a gene product does not occur. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein-protein interaction","termid":"FYPO:0000705"},{"relation_name":"is_a","term_name":"abnormal ribonucleoprotein complex binding","termid":"FYPO:0003632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000702","FYPO:0001985","FYPO:0000707","FYPO:0000652"],"is_obsolete":false,"name":"abolished U1 snRNP binding","synonyms":[{"name":"U1 snRNP binding abolished","type":"exact"}],"termid":"FYPO:0003633"}


id: GO:2000782
data:
  {"annotated_genes":["SJAG_02536","SJAG_04522"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109425,118429],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000784"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of establishment of cell polarity regulating cell shape.","definition_xrefs":["GOC:Mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of establishment of cell polarity","termid":"GO:2000114"},{"relation_name":"is_a","term_name":"regulation of establishment or maintenance of cell polarity regulating cell shape","termid":"GO:2000769"},{"relation_name":"regulates","term_name":"establishment of cell polarity regulating cell shape","termid":"GO:0071964"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02536":null,"SJAG_04522":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007163","GO:0008150"],"is_obsolete":false,"name":"regulation of establishment of cell polarity regulating cell shape","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:2000782","terms_by_termid":{"GO:2000784":null}}


id: PBO:0001300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mdm10/Mdm12/Mmm1 complex subunit Mdm10 (predicted)","termid":"PBO:0001300"}


id: PATO:0001893
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An odor quality of having increased odor.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"odorous","termid":"PATO:0001331"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased odor","termid":"PATO:0001893"}


id: MONDO:0005801
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A viral infectious disease that results in increased proliferation of affected CD4 lymphocytes, has material basis in Human T-lymphotropic virus 1, which is transmitted by sexual contact, transmitted by contaminated needles used by intravenous-drug users, and transmitted by breast feeding. The person infected with HTLV-1 eventually develop an often rapidly fatal leukemia, while others will develop a debilitative myelopathy, uveitis, infectious dermatitis, or another inflammatory disorder.","definition_xrefs":["EFO:0007316"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral infectious disease","termid":"MONDO:0005108"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human T-lymphotropic virus 1 infectious disease","secondary_identifiers":["UMLS:C0020097","MEDGEN:6919","MESH:D015490"],"synonyms":[{"name":"HTLV-1","type":"related"},{"name":"Human T lymphotropic virus type 1","type":"related"},{"name":"Human T-lymphotropic virus 1 caused disease or disorder","type":"exact"},{"name":"Human T-lymphotropic virus 1 disease or disorder","type":"exact"},{"name":"Human T-lymphotropic virus 1 infectious disease","type":"exact"},{"name":"human T-lymphotropic virus 1 infectious disease","type":"exact"}],"termid":"MONDO:0005801","xrefs":{"Monarch":{"xref_id":"0005801"}}}


id: GO:0034861
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: benzothiazole-2-sulfonate + H2O = 2-hydroxybenzothiazole + HSO3-.","definition_xrefs":["UM-BBD_reactionID:r1290"],"gene_count":0,"genotype_count":0,"name":"obsolete benzothiazole-2-sulfonate hydrolase activity (obsolete GO:0034861)","termid":"GO:0034861"}


id: PR:O42699
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl1902 gene.","definition_xrefs":["UniProtKB:O42699","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L19-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1682.14","synonyms":[{"name":"Spom972h-rpl1902","type":"exact"}],"termid":"PR:O42699"}


id: MONDO:0004182
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Stage IV includes T4b, NO,MO/any T NI, MO/ any T N2 MO,/ any T N3 MO/ any T any N M1 : T4b: Tumor invades the pelvic wall, abdominal wall. N1: Metastasis in a single lymph node, 2 cm or less in greatest dimension. N2: Metastasis in a single lymph node, more than 2 cm but not more than 5 cm in greatest dimension; or multiple lymph nodes, none more than 5 cm in greatest dimension. N3: Metastasis in a lymph node more than 5 cm in greatest dimension. M1: Distant metastasis.","definition_xrefs":["NCIT:C9368"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urinary bladder carcinoma","termid":"MONDO:0004986"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"stage IVb bladder cancer","secondary_identifiers":["MEDGEN:277737","DOID:7315","UMLS:C1336362"],"synonyms":[{"name":"Jewett-Marshall bladder cancer","type":"related"},{"name":"Jewett-Marshall stage D1 bladder cancer","type":"related"},{"name":"Jewett-Marshall stage D2 bladder cancer","type":"exact"},{"name":"Jewett-Marshall stage D2 urinary bladder cancer","type":"exact"},{"name":"Jewett-Marshall stage D2 urinary bladder carcinoma","type":"exact"},{"name":"stage IVB bladder cancer","type":"exact"},{"name":"stage IVB urinary bladder cancer","type":"exact"},{"name":"stage IVB urinary bladder carcinoma","type":"exact"}],"termid":"MONDO:0004182","xrefs":{"Monarch":{"xref_id":"0004182"}}}


id: _global:causally_upstream_of_or_within
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q.","direct_ancestors":[{"relation_name":"is_a","term_name":"causal_relation_between_processes","termid":"_global:causal_relation_between_processes"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"causally_upstream_of_or_within","secondary_identifiers":["RO:0002418"],"synonyms":[{"name":"affects","type":"related"}],"termid":"_global:causally_upstream_of_or_within"}


id: GO:1902947
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of tau-protein kinase activity.","definition_xrefs":["GO_REF:0000059","PMID:15897157","GOC:TermGenie","GOC:sjp","PMID:22986780"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein serine/threonine kinase activity","termid":"GO:0071900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of tau-protein kinase activity","synonyms":[{"name":"regulation of ATP:tau-protein O-phosphotransferase activity","type":"broad"},{"name":"regulation of CDK5/p23","type":"related"},{"name":"regulation of GSK","type":"related"},{"name":"regulation of STK31","type":"related"},{"name":"regulation of TPK","type":"related"},{"name":"regulation of TPK I","type":"related"},{"name":"regulation of TPK II","type":"related"},{"name":"regulation of TTK","type":"related"},{"name":"regulation of [Tau protein] kinase activity","type":"exact"},{"name":"regulation of brain protein kinase PK40erk activity","type":"narrow"},{"name":"regulation of cdk5/p20","type":"related"},{"name":"regulation of glycogen synthase kinase-3beta activity","type":"exact"},{"name":"regulation of protein tau kinase activity","type":"exact"},{"name":"regulation of tau kinase activity","type":"exact"},{"name":"regulation of tau protein kinase activity","type":"exact"},{"name":"regulation of tau-protein kinase I activity","type":"narrow"},{"name":"regulation of tau-protein kinase II activity","type":"narrow"},{"name":"regulation of tau-tubulin kinase activity","type":"narrow"}],"termid":"GO:1902947"}


id: GO:0004586
data:
  {"annotated_genes":["SJAG_00043"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77435],"is_not":false,"summary":null,"term":"GO:0004586"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-ornithine + H+ = CO2 + putrescine.","definition_xrefs":["EC:4.1.1.17","RHEA:22964"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00043":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"ornithine decarboxylase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-70692","KEGG_REACTION:R00670","MetaCyc:ORNDECARBOX-RXN"],"synonyms":[{"name":"L-ornithine carboxy-lyase (putrescine-forming)","type":"related"},{"name":"L-ornithine carboxy-lyase activity","type":"narrow"},{"name":"SpeC","type":"related"}],"termid":"GO:0004586","terms_by_termid":{"GO:0004586":null}}


id: PBO:0039612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annexin A1","termid":"PBO:0039612"}


id: GO:0047403
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + beta-D-Gal-(1,3)-beta-D-GlcNAc-(1,3)-beta-D-Gal-(1,4)-D-Glc = beta-D-Gal-(1,4)-D-Glc + beta-D-Gal-(1,3)-D-GlcNAc.","definition_xrefs":["EC:3.2.1.140"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016798","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"lacto-N-biosidase activity","secondary_identifiers":["MetaCyc:RXN-8731","RHEA:21568"],"synonyms":[{"name":"oligosaccharide lacto-N-biosylhydrolase activity","type":"related"}],"termid":"GO:0047403"}


id: PBO:0084170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Highly conserved zinc metalloprotease; component of the ER quality control mechanism that removes faulty proteins clogging translocation channels; inhibits SRP-independent translocation into the ER; has two roles in a-factor maturation, C-terminal CAAX proteolysis and the first step of N-terminal proteolytic processing; cleaves isoprenylated and non-prenylated oligopeptides; human homolog ZMPSTE24 implicated in mandibuloacral dysplasia (MAD), and complements the null mutant","termid":"PBO:0084170"}


id: PR:G2TRR4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- new19 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRR4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microsomal signal peptidase subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC887.22","synonyms":[{"name":"Spom972h-new19","type":"exact"}],"termid":"PR:G2TRR4"}


id: PBO:0080517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASF3 antisense RNA 1","termid":"PBO:0080517"}


id: GO:0010682
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of cinnamic acid, 3-phenyl-2-propenoic acid, which is then utilized in the metabolism of flavonoids.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete cinnamic acid biosynthetic process involved in flavonoid metabolism (obsolete GO:0010682)","termid":"GO:0010682"}


id: GO:0032306
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the regulated release of a prostaglandin from a cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of icosanoid secretion","termid":"GO:0032303"},{"relation_name":"is_a","term_name":"regulation of secretion by cell","termid":"GO:1903530"},{"relation_name":"regulates","term_name":"prostaglandin secretion","termid":"GO:0032310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of prostaglandin secretion","synonyms":[{"name":"regulation of prostacyclin secretion","type":"narrow"}],"termid":"GO:0032306"}


id: PBO:0068093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 400","termid":"PBO:0068093"}


id: PBO:0050172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 3 pseudogene 28","termid":"PBO:0050172"}


id: PBO:0066726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 23","termid":"PBO:0066726"}


id: PBO:0088732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin cortical patch component Lsb5","termid":"PBO:0088732"}


id: PBO:0062615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily V member 3 pseudogene","termid":"PBO:0062615"}


id: PBO:0079338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 23","termid":"PBO:0079338"}


id: PBO:0089655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Brx1","termid":"PBO:0089655"}


id: GO:0015014
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of polysaccharide chain component of heparan sulfate proteoglycan.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete heparan sulfate proteoglycan biosynthetic process, chain elongation (obsolete GO:0015014)","synonyms":[{"name":"heparan sulfate proteoglycan anabolism, polysaccharide chain anabolism","type":"exact"},{"name":"heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process","type":"exact"},{"name":"heparan sulfate proteoglycan chain elongation","type":"exact"},{"name":"heparan sulfate proteoglycan formation, polysaccharide chain biosynthesis","type":"exact"},{"name":"heparan sulfate proteoglycan formation, polysaccharide chain formation","type":"exact"},{"name":"heparan sulfate proteoglycan synthesis, polysaccharide chain synthesis","type":"exact"},{"name":"heparan sulphate proteoglycan biosynthesis, polysaccharide chain biosynthesis","type":"exact"},{"name":"heparan sulphate proteoglycan biosynthesis, polysaccharide chain biosynthetic process","type":"exact"},{"name":"heparin proteoglycan biosynthetic process, polysaccharide chain biosynthetic process","type":"related"}],"termid":"GO:0015014"}


id: PBO:0053552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 559","termid":"PBO:0053552"}


id: GO:0005587
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A collagen heterotrimer containing type IV alpha chains; [alpha1(IV)]2alpha2(IV) trimers are commonly observed, although more type IV alpha chains exist and may be present in type IV trimers; type IV collagen triple helices associate to form 3 dimensional nets within basement membranes.","definition_xrefs":["PMID:19693541","PMID:21421911"],"direct_ancestors":[{"relation_name":"is_a","term_name":"network-forming collagen trimer","termid":"GO:0098642"},{"relation_name":"part_of","term_name":"basement membrane","termid":"GO:0005604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"collagen type IV trimer","secondary_identifiers":["Wikipedia:Collagen_type_IV"],"termid":"GO:0005587"}


id: PBO:0064503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POLR2D pseudogene 2","termid":"PBO:0064503"}


id: GO:0048686
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of sprouting of an injured axon.","definition_xrefs":["GOC:dph","GOC:dgh","GOC:lm","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure morphogenesis","termid":"GO:0022603"},{"relation_name":"is_a","term_name":"regulation of developmental growth","termid":"GO:0048638"},{"relation_name":"is_a","term_name":"regulation of extent of cell growth","termid":"GO:0061387"},{"relation_name":"regulates","term_name":"sprouting of injured axon","termid":"GO:0048682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of sprouting of injured axon","termid":"GO:0048686"}


id: MONDO:0957443
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary ataxia","termid":"MONDO:0100309"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autosomal recessive ataxia due to PEX2 deficiency","secondary_identifiers":["MEDGEN:1843414","UMLS:C5816796","Orphanet:642965"],"termid":"MONDO:0957443","xrefs":{"Monarch":{"xref_id":"0957443"}}}


id: PBO:0048733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate dehydrogenase 1 pseudogene 4","termid":"PBO:0048733"}


id: PBO:0082598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clathrin adaptor (adaptin) accessory protein; physically interacts with and is involved in localization of clathrin adaptor protein complex-1 (AP-1); green fluorescent protein (GFP)-fusion protein colocalizes with clathrin-coated vesicles","termid":"PBO:0082598"}


id: MONDO:0016921
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndrome caused by partial chromosomal duplication","termid":"MONDO:0000762"},{"relation_name":"is_a","term_name":"chromosome 1 disorder","termid":"MONDO:0700008"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial duplication of chromosome 1","secondary_identifiers":["MEDGEN:1379629","Orphanet:262191","UMLS:C4518488","GARD:20842","SCTID:726338000"],"synonyms":[{"name":"partial duplication of chromosome type 1","type":"exact"},{"name":"partial trisomy of chromosome 1","type":"exact"}],"termid":"MONDO:0016921","xrefs":{"Monarch":{"xref_id":"0016921"}}}


id: MONDO:0006468
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary carcinoma of the thyroid gland composed of undifferentiated cells. The malignant cells demonstrate evidence of epithelial differentiation, either by immunohistochemistry or electron microscopic studies. Microscopically, in the majority of cases there is a mixture of spindle, epithelioid, and giant cells. The vast majority of the patients present with a rapidly enlarging neck mass. The clinical course is usually aggressive.","definition_xrefs":["NCIT:C3878"],"direct_ancestors":[{"relation_name":"is_a","term_name":"large cell carcinoma","termid":"MONDO:0005232"},{"relation_name":"is_a","term_name":"undifferentiated carcinoma","termid":"MONDO:0005617"},{"relation_name":"is_a","term_name":"thyroid gland carcinoma","termid":"MONDO:0015075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"thyroid gland undifferentiated (anaplastic) carcinoma","secondary_identifiers":["HP:0011779","UMLS:C0238461","icd11.foundation:320540024","MESH:D065646","Orphanet:142","EFO:1000595","SCTID:255031003","GARD:664","DOID:0080522","MedDRA:10002240","ONCOTREE:THAP","MEDGEN:116064"],"synonyms":[{"name":"Dedifferentiated thyroid gland carcinoma","type":"exact"},{"name":"THAP","type":"related"},{"name":"anaplastic carcinoma of the thyroid","type":"exact"},{"name":"anaplastic carcinoma of the thyroid gland","type":"exact"},{"name":"anaplastic carcinoma of thyroid","type":"exact"},{"name":"anaplastic carcinoma of thyroid gland","type":"exact"},{"name":"anaplastic thyroid cancer","type":"exact"},{"name":"anaplastic thyroid carcinoma","type":"exact"},{"name":"anaplastic thyroid gland carcinoma","type":"exact"},{"name":"metaplastic thyroid gland carcinoma","type":"exact"},{"name":"pleomorphic thyroid gland carcinoma","type":"exact"},{"name":"sarcomatoid thyroid gland carcinoma","type":"exact"},{"name":"thyroid cancer, anaplastic","type":"related"},{"name":"thyroid carcinoma, anaplastic","type":"related"},{"name":"thyroid gland carcinosarcoma","type":"exact"},{"name":"thyroid gland undifferentiated (anaplastic) carcinoma","type":"exact"},{"name":"thyroid gland undifferentiated carcinoma","type":"exact"},{"name":"undifferentiated (anaplastic) thyroid gland cancer","type":"exact"},{"name":"undifferentiated (anaplastic) thyroid gland carcinoma","type":"exact"},{"name":"undifferentiated carcinoma of the thyroid","type":"exact"},{"name":"undifferentiated carcinoma of the thyroid gland","type":"exact"},{"name":"undifferentiated carcinoma of thyroid","type":"exact"},{"name":"undifferentiated carcinoma of thyroid gland","type":"exact"},{"name":"undifferentiated thyroid carcinoma","type":"exact"},{"name":"undifferentiated thyroid gland carcinoma","type":"exact"},{"name":"undifferentiated thyroid tumor","type":"exact"},{"name":"undifferentiated thyroid tumour","type":"exact"}],"termid":"MONDO:0006468","xrefs":{"Monarch":{"xref_id":"0006468"}}}


id: FYPO:0001977
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of galactomannan measured in the cell wall is greater than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cell wall polysaccharide level","termid":"FYPO:0004859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased cell wall galactomannan level","synonyms":[{"name":"increased cell wall galactomannan accumulation","type":"related"},{"name":"increased cell wall galactomannan level during mitotic cell cycle","type":"related"},{"name":"increased cell wall galactomannan level during vegetative growth","type":"exact"}],"termid":"FYPO:0001977"}


id: PBO:0062052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily V member 2","termid":"PBO:0062052"}


id: PBO:0045774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ecm29 proteasome adaptor and scaffold","termid":"PBO:0045774"}


id: PBO:0063845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidase inhibitor 15","termid":"PBO:0063845"}


id: PBO:0002461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin-like protein Cut7","termid":"PBO:0002461"}


id: PBO:0053346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 229","termid":"PBO:0053346"}


id: PBO:0066482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase","termid":"PBO:0066482"}


id: PBO:0053940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1241","termid":"PBO:0053940"}


id: PBO:0067107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 149, pseudogene","termid":"PBO:0067107"}


id: PR:000045537
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GTP-binding nuclear protein spi1 that is encoded in the genome of Schizosaccharomyces pombe.","definition_xrefs":["PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GTP-binding nuclear protein spi1","termid":"PR:000027715"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP-binding nuclear protein spi1 (Schizosaccharomyces pombe)","pombase_gene_id":"SPBC1289.03c","synonyms":[{"name":"Spom-spi1","type":"exact"}],"termid":"PR:000045537"}


id: GO:0015994
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porphyrin-containing compound metabolic process","termid":"GO:0006778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"chlorophyll metabolic process","synonyms":[{"name":"chlorophyll metabolism","type":"exact"}],"termid":"GO:0015994"}


id: PBO:0064492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase I subunit E","termid":"PBO:0064492"}


id: PBO:0087113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosome-associated, nascent chain binding factor; binds N-terminal region of nascent peptides during translation; recognizes target proteins via its putative metallopeptidase peptide-binding pocket","termid":"PBO:0087113"}


id: PBO:0043413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cap methyltransferase 2","termid":"PBO:0043413"}


id: MONDO:0024528
data:
  {"annotated_genes":["SJAG_02658"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88276],"is_not":false,"summary":null,"term":"MONDO:0024528"}]},"cv_name":"mondo","definition":"Any autosomal dominant progressive external ophthalmoplegia in which the cause of the disease is a mutation in the POLG gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant progressive external ophthalmoplegia","termid":"MONDO:0008003"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02658":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069","MONDO:0002320","MONDO:0000426","MONDO:0005336"],"is_obsolete":false,"name":"progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0111521","UMLS:C1834846","MEDGEN:371919","OMIM:157640","GARD:13174"],"synonyms":[{"name":"PEOA1","type":"exact"},{"name":"POLG autosomal dominant progressive external ophthalmoplegia","type":"exact"},{"name":"autosomal dominant progressive external ophthalmoplegia caused by mutation in POLG","type":"exact"},{"name":"progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 1","type":"exact"},{"name":"progressive external ophthalmoplegia, autosomal dominant 1","type":"exact"}],"termid":"MONDO:0024528","terms_by_termid":{"MONDO:0024528":null},"xrefs":{"Monarch":{"xref_id":"0024528"}}}


id: PBO:0047457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ficolin 1","termid":"PBO:0047457"}


id: PBO:0110064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RQT complex subunit Rqt4","termid":"PBO:0110064"}


id: SO:0000271
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tRNA sequence that has a tryptophan anticodon, and a 3' tryptophan binding region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"tryptophan_tRNA_primary_transcript","termid":"SO:0000228"},{"relation_name":"is_a","term_name":"tRNA","termid":"SO:0000253"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tryptophanyl_tRNA","synonyms":[{"name":"tryptophanyl tRNA","type":"exact"},{"name":"tryptophanyl-transfer RNA","type":"exact"},{"name":"tryptophanyl-transfer ribonucleic acid","type":"exact"}],"termid":"SO:0000271"}


id: MONDO:0010333
data:
  {"annotated_genes":["SJAG_04235"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88010],"is_not":false,"summary":null,"term":"MONDO:0010333"}]},"cv_name":"mondo","definition":"A developmental anomalies syndrome characterized by coloboma of the iris and optic nerve, facial dysmorphism (high forehead, microretrognathia, low-set ears), intellectual deficit, agenesis of the corpus callosum (ACC), sensorineural hearing loss, skeletal anomalies and short stature.","definition_xrefs":["Orphanet:52055"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"excluded_subClassOf","term_name":"obsolete developmental defect of the eye (obsolete MONDO:0020145)","termid":"MONDO:0020145"},{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04235":null},"genotype_count":0,"is_obsolete":false,"name":"corpus callosum agenesis-intellectual disability-coloboma-micrognathia syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:12486","UMLS:C1845446","MEDGEN:335185","MESH:C564509","SCTID:722282008","OMIM:300472","DOID:0060816"],"synonyms":[{"name":"Graham-Cox syndrome","type":"exact"},{"name":"MRXS28","type":"exact"},{"name":"agenesis of the corpus callosum-intellectual disability-coloboma-micrognathia syndrome","type":"related"},{"name":"corpus callosum, agenesis of, with impaired intellectual development, ocular coloboma and micrognathia, X-linked recessive","type":"exact"},{"name":"corpus callosum, agenesis of, with intellectual disability, ocular coloboma and micrognathia","type":"exact"},{"name":"corpus callosum, agenesis of, with intellectual disability, ocular coloboma, and micrognathia","type":"related"},{"name":"corpus callosum, agenesis of, with mental retardation, ocular coloboma and micrognathia","type":"exact"},{"name":"corpus callosum, agenesis of, with mental retardation, ocular coloboma, and micrognathia","type":"related"},{"name":"intellectual disability, X-linked, syndromic 28","type":"exact"},{"name":"mental retardation, X-linked, syndromic 28","type":"exact"}],"termid":"MONDO:0010333","terms_by_termid":{"MONDO:0010333":null},"xrefs":{"Monarch":{"xref_id":"0010333"}}}


id: PBO:0074291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLIT and NTRK like family member 6","termid":"PBO:0074291"}


id: PBO:0082797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the yeast dynactin complex; consisting of Nip100p, Jnm1p, and Arp1p; required for proper nuclear migration and spindle partitioning during mitotic anaphase B","termid":"PBO:0082797"}


id: PBO:0076888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 41","termid":"PBO:0076888"}


id: GO:0071995
data:
  {"annotated_genes":["SJAG_01344","SJAG_03497","SJAG_05213"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[120061,98833,97855],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036246"}]},"cv_name":"biological_process","definition":"The directed movement of phytochelatins into the vacuole. Phytochelatins are a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes.","definition_xrefs":["ISBN:0198506732","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuolar transmembrane transport","termid":"GO:0034486"},{"relation_name":"is_a","term_name":"phytochelatin transmembrane transport","termid":"GO:0071994"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01344":null,"SJAG_03497":null,"SJAG_05213":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"phytochelatin import into vacuole","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cadystin import into vacuole","type":"related"},{"name":"phytochelatin transport into vacuole","type":"exact"}],"termid":"GO:0071995","terms_by_termid":{"GO:0036246":null}}


id: PBO:0051596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 22","termid":"PBO:0051596"}


id: GO:0001717
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification process that results in the conversion of serine, carried by a specialized tRNA(ser) (which can read a UGA anticodon), to selenocysteine.","definition_xrefs":["ISBN:155581073X"],"direct_ancestors":[{"relation_name":"is_a","term_name":"charged-tRNA amino acid modification","termid":"GO:0019988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006399","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"conversion of seryl-tRNAsec to selenocys-tRNAsec","termid":"GO:0001717"}


id: PBO:0078032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 22","termid":"PBO:0078032"}


id: PBO:0038549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABHD17A pseudogene 4","termid":"PBO:0038549"}


id: MONDO:0010695
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"occipital hair, white lock of","secondary_identifiers":["UMLS:C1839578","MEDGEN:326917","OMIM:310900"],"synonyms":[{"name":"occipital hair, white lock of","type":"exact"}],"termid":"MONDO:0010695","xrefs":{"Monarch":{"xref_id":"0010695"}}}


id: PATO:0001548
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in an entity exhibiting the physical characteristics of an amorphous (non-crystalline) form of matter between a gas and a solid that has a definite volume, but no definite shape.","direct_ancestors":[{"relation_name":"is_a","term_name":"quality of a substance","termid":"PATO:0002198"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"quality of a liquid","synonyms":[{"name":"liquidity","type":"exact"}],"termid":"PATO:0001548"}


id: GO:0005078
data:
  {"annotated_genes":["SJAG_01199","SJAG_03625","SJAG_04503"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71738,101761,119221],"is_not":false,"summary":null,"term":"GO:0005078"}]},"cv_name":"molecular_function","definition":"The binding activity of a molecule that functions as a physical support for the assembly of a multiprotein mitogen-activated protein kinase (MAPK) complex. Binds multiple kinases of the MAPKKK cascade, and also upstream signaling proteins, permitting those molecules to function in a coordinated way. Bringing together multiple enzymes and their substrates enables the signal to be transduced quickly and efficiently.","definition_xrefs":["PMID:9405336","PMID:15213240","PMID:12511654"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling adaptor activity","termid":"GO:0035591"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01199":null,"SJAG_03625":null,"SJAG_04503":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0030674","GO:0060090","GO:0003674"],"is_obsolete":false,"name":"MAP-kinase scaffold activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"MAP-kinase scaffold protein activity","type":"exact"}],"termid":"GO:0005078","terms_by_termid":{"GO:0005078":null}}


id: MONDO:0958264
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"scleritis","termid":"MONDO:0001718"},{"relation_name":"is_a","term_name":"eye infectious disorder","termid":"MONDO:0043885"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"infectious scleritis","secondary_identifiers":["Orphanet:648665","UMLS:C5816746","MEDGEN:1853163"],"termid":"MONDO:0958264","xrefs":{"Monarch":{"xref_id":"0958264"}}}


id: MONDO:0005615
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Plasmacytoma is a localized mass of neoplastic monoclonal plasma cells that represents approximately 5% of all plasma cell neoplasms. There are two separate entities: primary plasmacytoma of the bone and extramedullary plasmacytoma of the soft tissues. Of the extramedullary plasmacytomas, 80% occur in the head and neck, usually in the upper respiratory tract. The median age at diagnosis is 50 years and the male to female ratio is 3:1. Long-term survival is possible following local radiotherapy, particularly for soft tissue presentations.","definition_xrefs":["Orphanet:86855"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma cell neoplasm","termid":"MONDO:0004959"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"plasmacytoma","secondary_identifiers":["ICD9:238.6","MESH:D010954","GARD:13446","MedDRA:10035484","EFO:0006738","NCIT:C9349","SCTID:415112005","MEDGEN:18506","ICDO:9731/3","UMLS:C0032131","icd11.foundation:1811140613","DOID:3721"],"synonyms":[{"name":"anaplastic plasmacytoma","type":"related"},{"name":"anaplastic skeletal plasmacytoma (type)","type":"related"},{"name":"anaplastic solitary extramedullary plasmacytoma of the cecum (type)","type":"related"},{"name":"extramedullary anaplastic plasmacytoma (type)","type":"related"},{"name":"myeloma - solitary","type":"related"},{"name":"myeloma, solitary","type":"related"},{"name":"plasmacytoma","type":"exact"},{"name":"solitary myeloma","type":"related"},{"name":"solitary plasmacytoma","type":"narrow"}],"termid":"MONDO:0005615","xrefs":{"Monarch":{"xref_id":"0005615"}}}


id: GO:0051224
data:
  {"annotated_genes":["SJAG_01311","SJAG_03970"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89855],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042997"},{"annotations":[107616],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042308"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a protein into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of transport","termid":"GO:0051051"},{"relation_name":"is_a","term_name":"regulation of protein transport","termid":"GO:0051223"},{"relation_name":"is_a","term_name":"negative regulation of protein localization","termid":"GO:1903828"},{"relation_name":"is_a","term_name":"negative regulation of establishment of protein localization","termid":"GO:1904950"},{"relation_name":"negatively_regulates","term_name":"protein transport","termid":"GO:0015031"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01311":null,"SJAG_03970":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of protein transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of protein transport","type":"exact"},{"name":"down-regulation of protein transport","type":"exact"},{"name":"downregulation of protein transport","type":"exact"},{"name":"inhibition of protein transport","type":"narrow"}],"termid":"GO:0051224","terms_by_termid":{"GO:0042308":null,"GO:0042997":null}}


id: MONDO:0859179
data:
  {"annotated_genes":["SJAG_02416"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88113],"is_not":false,"summary":null,"term":"MONDO:0859179"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02416":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with dysmorphic facies and thin corpus callosum","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5551361","MEDGEN:1790413","OMIM:619480","DOID:0070469"],"termid":"MONDO:0859179","terms_by_termid":{"MONDO:0859179":null},"xrefs":{"Monarch":{"xref_id":"0859179"}}}


id: PBO:0065168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline dehydrogenase 1","termid":"PBO:0065168"}


id: PBO:0047399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 38","termid":"PBO:0047399"}


id: PBO:0039184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AKAP13 antisense RNA 1","termid":"PBO:0039184"}


id: MONDO:0007052
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"growth hormone-producing pituitary gland adenoma","termid":"MONDO:0006238"},{"relation_name":"is_a","term_name":"familial isolated pituitary adenoma","termid":"MONDO:0017824"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth hormone secreting pituitary adenoma 1","secondary_identifiers":["DOID:0112009","UMLS:C4538355","MEDGEN:1618709","OMIM:102200"],"synonyms":[{"name":"PAGH1","type":"related"},{"name":"PITA1","type":"related"},{"name":"Somatotrophinoma, familial","type":"related"},{"name":"acromegaly due to pituitary adenoma 1","type":"related"},{"name":"familial isolated pituitary adenoma syndrome","type":"related"},{"name":"isolated familial somatotropinoma","type":"related"},{"name":"pituitary adenoma 1, multiple types","type":"related"},{"name":"pituitary adenoma 1, multiple types, autosomal dominant, somatic mutation","type":"exact"},{"name":"pituitary adenoma predisposition","type":"related"},{"name":"pituitary adenoma predisposition, autosomal dominant, somatic mutation","type":"exact"},{"name":"pituitary adenoma, familial isolated","type":"related"},{"name":"pituitary adenoma, growth hormone-secreting, 1","type":"related"},{"name":"pituitary adenoma, growth hormone-secreting, type 1","type":"exact"},{"name":"somatotropinoma, familial isolated","type":"related"}],"termid":"MONDO:0007052","xrefs":{"Monarch":{"xref_id":"0007052"}}}


id: GO:0099602
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A molecular function that directly (via physical interaction or direct modification) activates, inhibits or otherwise modulates the activity of a neurotransmitter receptor. Modulation of activity includes changes in desensitization rate, ligand affinity, ion selectivity and pore-opening/closing.","definition_xrefs":["GOC:dos","PMID:12740117","PMID:18387948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor regulator activity","termid":"GO:0030545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0098772","GO:0003674"],"is_obsolete":false,"name":"neurotransmitter receptor regulator activity","termid":"GO:0099602"}


id: PBO:0047753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"farnesyltransferase, CAAX box, beta","termid":"PBO:0047753"}


id: FYPO:0007593
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitophagy, i.e. autophagic degradation of the mitochondria, is abnormal when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitophagy","termid":"FYPO:0007590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal mitophagy during nitrogen starvation","synonyms":[{"name":"abnormal autophagy of mitochondrion during nitrogen depletion","type":"exact"},{"name":"abnormal autophagy of mitochondrion during nitrogen deprivation","type":"exact"},{"name":"abnormal autophagy of mitochondrion during nitrogen starvation","type":"exact"}],"termid":"FYPO:0007593"}


id: SO:0000541
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one VDJ-gene and one C-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"C_gene_segment","termid":"SO:0000478"},{"relation_name":"has_part","term_name":"VDJ_gene_segment","termid":"SO:0000574"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VDJ_C_cluster","synonyms":[{"name":"(VDJ)-C-CLUSTER","type":"exact"},{"name":"VDJ C cluster","type":"exact"}],"termid":"SO:0000541"}


id: PBO:0043588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COL18A1 antisense RNA 2","termid":"PBO:0043588"}


id: GO:0030262
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Alterations undergone by nuclei at the molecular and morphological level as part of the execution phase of apoptosis.","definition_xrefs":["GOC:mtg_apoptosis","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component disassembly involved in execution phase of apoptosis","termid":"GO:0006921"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"apoptotic nuclear changes","synonyms":[{"name":"apoptotic nuclear change","type":"narrow"}],"termid":"GO:0030262"}


id: GO:0006522
data:
  {"annotated_genes":["SJAG_04145"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113064],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042852"},{"annotations":[70142],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042853"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving alanine, 2-aminopropanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-amino acid metabolic process","termid":"GO:1901605"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04145":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"alanine metabolic process","references_by_uniquename":{"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"alanine metabolism","type":"exact"}],"termid":"GO:0006522","terms_by_termid":{"GO:0042852":null,"GO:0042853":null}}


id: PBO:0070238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 176 pseudogene","termid":"PBO:0070238"}


id: PBO:0085561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein containing GATA family zinc finger motifs; similar to Gln3p and Dal80p; expression repressed by leucine","termid":"PBO:0085561"}


id: PBO:0056605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MDN1 antisense RNA 1","termid":"PBO:0056605"}


id: PBO:0030462
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_isochromosome_formation_with_preferential_breakage_in_the_imr_region","termid":"PBO:0030462"}


id: PBO:0045601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox 4 like 12 (pseudogene)","termid":"PBO:0045601"}


id: GO:0070422
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex formed by the association of the serine-threonine protein kinase Raf-1 with the beta and gamma subunits of a heterotrimeric G protein.","definition_xrefs":["GOC:mah","PMID:7782277"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"G-protein beta/gamma-Raf-1 complex","synonyms":[{"name":"G protein complex (GNG2, GNB2L1, RAF1)","type":"related"}],"termid":"GO:0070422"}


id: MONDO:0000351
data:
  {"annotated_genes":["SJAG_03556","SJAG_01070"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87368],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100255"},{"annotations":[88668],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013404"}]},"cv_name":"mondo","definition":"An inherited metabolic disease that is has its basis in the disruption of methionine catabolic process.","definition_xrefs":["MONDO:patterns/inborn_metabolic"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of methionine cycle and sulfur amino acid metabolism","termid":"MONDO:0019222"},{"relation_name":"is_a","term_name":"inborn disorder of aspartate family metabolism","termid":"MONDO:0037938"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01070":null,"SJAG_03556":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"disorder of methionine catabolism","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:887708","SCTID:43123004","DOID:0050544","UMLS:C4048705","HP:0003235","NANDO:2200475"],"synonyms":[{"name":"hypermethioninemia","type":"exact"},{"name":"inborn error of methionine catabolic process","type":"exact"},{"name":"inborn methionine catabolic process disorder","type":"exact"},{"name":"rare inborn error of methionine catabolic process","type":"exact"}],"termid":"MONDO:0000351","terms_by_termid":{"MONDO:0013404":null,"MONDO:0100255":null},"xrefs":{"Monarch":{"xref_id":"0000351"}}}


id: GO:0019778
data:
  {"annotated_genes":["SJAG_00645"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75111],"is_not":false,"summary":null,"term":"GO:0019778"}]},"cv_name":"molecular_function","definition":"Catalysis of the activation of the small ubiquitin-related modifier APG12, through the formation of an ATP-dependent high-energy thiolester bond.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like modifier activating enzyme activity","termid":"GO:0008641"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00645":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140096","GO:0016874","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"Atg12 activating enzyme activity","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"APG12 activating enzyme activity","type":"related"}],"termid":"GO:0019778","terms_by_termid":{"GO:0019778":null}}


id: PBO:0056084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LY75-CD302 readthrough","termid":"PBO:0056084"}


id: MONDO:0000153
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital cardiac defect in which two heart vessels are reversed (transposed).","definition_xrefs":["NCIT:C84742"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital heart malformation","termid":"MONDO:0019512"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transposition of the great arteries","secondary_identifiers":["NANDO:2200258","Orphanet:216675","UMLS:C0040761","MEDGEN:21245","icd11.foundation:429190257","MESH:D014188","GARD:7795"],"synonyms":[{"name":"TGA","type":"exact"},{"name":"TGV","type":"exact"},{"name":"complete transposition","type":"exact"},{"name":"great vessels transposition","type":"exact"},{"name":"transposition of great vessels","type":"exact"},{"name":"transposition of the great vessels","type":"exact"}],"termid":"MONDO:0000153","xrefs":{"Monarch":{"xref_id":"0000153"}}}


id: FYPO:0005031
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which more ribonucleotides than normal are incorporated into the lagging strand during mitotic DNA replication.","definition_xrefs":["PMID:25664722","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased ribonucleotide incorporation into DNA","termid":"FYPO:0007680"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000293","FYPO:0000631","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased ribonucleotide incorporation on lagging strand","synonyms":[{"name":"increased rNMP incorporation on lagging strand","type":"related"},{"name":"increased rNTP incorporation on lagging strand","type":"related"},{"name":"increased ribonucleotide residue incorporation on lagging strand","type":"exact"}],"termid":"FYPO:0005031"}


id: GO:1900261
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of RNA-directed 5'-3' RNA polymerase activity.","definition_xrefs":["GOC:TermGenie","GOC:pf"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of RNA-dependent RNA polymerase activity (obsolete GO:1900261)","synonyms":[{"name":"activation of 3D polymerase activity","type":"exact"},{"name":"activation of PB1 proteins","type":"related"},{"name":"activation of PB2 proteins","type":"related"},{"name":"activation of RDRP","type":"related"},{"name":"activation of RNA nucleotidyltransferase (RNA-directed) activity","type":"exact"},{"name":"activation of RNA replicase activity","type":"exact"},{"name":"activation of RNA synthetase activity","type":"related"},{"name":"activation of RNA-dependent RNA polymerase activity","type":"exact"},{"name":"activation of RNA-dependent RNA replicase activity","type":"exact"},{"name":"activation of RNA-dependent ribonucleate nucleotidyltransferase activity","type":"exact"},{"name":"activation of RNA-directed RNA polymerase activity","type":"narrow"},{"name":"activation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)","type":"exact"},{"name":"activation of phage f2 replicase","type":"narrow"},{"name":"activation of polymerase L","type":"related"},{"name":"activation of ribonucleic acid replicase activity","type":"exact"},{"name":"activation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity","type":"exact"},{"name":"activation of ribonucleic acid-dependent ribonucleic acid polymerase activity","type":"exact"},{"name":"activation of ribonucleic replicase activity","type":"exact"},{"name":"activation of ribonucleic synthetase activity","type":"related"},{"name":"activation of transcriptase","type":"broad"},{"name":"positive regulation of 3D polymerase activity","type":"exact"},{"name":"positive regulation of PB1 proteins","type":"related"},{"name":"positive regulation of PB2 proteins","type":"related"},{"name":"positive regulation of RDRP","type":"related"},{"name":"positive regulation of RNA nucleotidyltransferase (RNA-directed) activity","type":"exact"},{"name":"positive regulation of RNA replicase activity","type":"exact"},{"name":"positive regulation of RNA synthetase activity","type":"related"},{"name":"positive regulation of RNA-dependent RNA replicase activity","type":"exact"},{"name":"positive regulation of RNA-dependent ribonucleate nucleotidyltransferase activity","type":"exact"},{"name":"positive regulation of RNA-directed 5'-3' RNA polymerase activity","type":"exact"},{"name":"positive regulation of RNA-directed RNA polymerase activity","type":"broad"},{"name":"positive regulation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)","type":"exact"},{"name":"positive regulation of phage f2 replicase","type":"narrow"},{"name":"positive regulation of polymerase L","type":"related"},{"name":"positive regulation of ribonucleic acid replicase activity","type":"exact"},{"name":"positive regulation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity","type":"exact"},{"name":"positive regulation of ribonucleic acid-dependent ribonucleic acid polymerase activity","type":"exact"},{"name":"positive regulation of ribonucleic replicase activity","type":"exact"},{"name":"positive regulation of ribonucleic synthetase activity","type":"related"},{"name":"positive regulation of transcriptase","type":"broad"},{"name":"up regulation of 3D polymerase activity","type":"exact"},{"name":"up regulation of PB1 proteins","type":"related"},{"name":"up regulation of PB2 proteins","type":"related"},{"name":"up regulation of Q-beta replicase activity","type":"exact"},{"name":"up regulation of RDRP","type":"related"},{"name":"up regulation of RNA nucleotidyltransferase (RNA-directed) activity","type":"exact"},{"name":"up regulation of RNA replicase activity","type":"exact"},{"name":"up regulation of RNA synthetase activity","type":"related"},{"name":"up regulation of RNA-dependent RNA polymerase activity","type":"exact"},{"name":"up regulation of RNA-dependent RNA replicase activity","type":"exact"},{"name":"up regulation of RNA-dependent ribonucleate nucleotidyltransferase activity","type":"exact"},{"name":"up regulation of RNA-directed RNA polymerase activity","type":"exact"},{"name":"up regulation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)","type":"exact"},{"name":"up regulation of phage f2 replicase","type":"narrow"},{"name":"up regulation of polymerase L","type":"related"},{"name":"up regulation of ribonucleic acid replicase activity","type":"exact"},{"name":"up regulation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity","type":"exact"},{"name":"up regulation of ribonucleic acid-dependent ribonucleic acid polymerase activity","type":"exact"},{"name":"up regulation of ribonucleic replicase activity","type":"exact"},{"name":"up regulation of ribonucleic synthetase activity","type":"related"},{"name":"up regulation of transcriptase","type":"broad"},{"name":"up-regulation of 3D polymerase activity","type":"exact"},{"name":"up-regulation of PB1 proteins","type":"related"},{"name":"up-regulation of PB2 proteins","type":"related"},{"name":"up-regulation of Q-beta replicase activity","type":"exact"},{"name":"up-regulation of RDRP","type":"related"},{"name":"up-regulation of RNA nucleotidyltransferase (RNA-directed) activity","type":"exact"},{"name":"up-regulation of RNA replicase activity","type":"exact"},{"name":"up-regulation of RNA synthetase activity","type":"related"},{"name":"up-regulation of RNA-dependent RNA polymerase activity","type":"exact"},{"name":"up-regulation of RNA-dependent RNA replicase activity","type":"exact"},{"name":"up-regulation of RNA-dependent ribonucleate nucleotidyltransferase activity","type":"exact"},{"name":"up-regulation of RNA-directed RNA polymerase activity","type":"exact"},{"name":"up-regulation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)","type":"exact"},{"name":"up-regulation of phage f2 replicase","type":"narrow"},{"name":"up-regulation of polymerase L","type":"related"},{"name":"up-regulation of ribonucleic acid replicase activity","type":"exact"},{"name":"up-regulation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity","type":"exact"},{"name":"up-regulation of ribonucleic acid-dependent ribonucleic acid polymerase activity","type":"exact"},{"name":"up-regulation of ribonucleic replicase activity","type":"exact"},{"name":"up-regulation of ribonucleic synthetase activity","type":"related"},{"name":"up-regulation of transcriptase","type":"broad"},{"name":"upregulation of 3D polymerase activity","type":"exact"},{"name":"upregulation of PB1 proteins","type":"related"},{"name":"upregulation of PB2 proteins","type":"related"},{"name":"upregulation of Q-beta replicase activity","type":"exact"},{"name":"upregulation of RDRP","type":"related"},{"name":"upregulation of RNA nucleotidyltransferase (RNA-directed) activity","type":"exact"},{"name":"upregulation of RNA replicase activity","type":"exact"},{"name":"upregulation of RNA synthetase activity","type":"related"},{"name":"upregulation of RNA-dependent RNA polymerase activity","type":"exact"},{"name":"upregulation of RNA-dependent RNA replicase activity","type":"exact"},{"name":"upregulation of RNA-dependent ribonucleate nucleotidyltransferase activity","type":"exact"},{"name":"upregulation of RNA-directed RNA polymerase activity","type":"exact"},{"name":"upregulation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)","type":"exact"},{"name":"upregulation of phage f2 replicase","type":"narrow"},{"name":"upregulation of polymerase L","type":"related"},{"name":"upregulation of ribonucleic acid replicase activity","type":"exact"},{"name":"upregulation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity","type":"exact"},{"name":"upregulation of ribonucleic acid-dependent ribonucleic acid polymerase activity","type":"exact"},{"name":"upregulation of ribonucleic replicase activity","type":"exact"},{"name":"upregulation of ribonucleic synthetase activity","type":"related"},{"name":"upregulation of transcriptase","type":"broad"}],"termid":"GO:1900261"}


id: GO:0018623
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: benzoate + NADH + H+ + O2 = catechol + CO2 + NAD+.","definition_xrefs":["EC:1.14.12.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"benzoate 1,2-dioxygenase activity","secondary_identifiers":["UM-BBD_enzymeID:r0245","MetaCyc:BENZOATE-12-DIOXYGENASE-RXN","RHEA:12633"],"synonyms":[{"name":"benzoate dioxygenase activity","type":"related"},{"name":"benzoate hydroxylase activity","type":"related"},{"name":"benzoate,NADH:oxygen oxidoreductase (1,2-hydroxylating)","type":"related"},{"name":"benzoate,NADH:oxygen oxidoreductase (1,2-hydroxylating, decarboxylating)","type":"related"},{"name":"benzoic hydroxylase activity","type":"related"}],"termid":"GO:0018623"}


id: MONDO:0021673
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"post-infectious disorder","termid":"MONDO:0021669"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"post-bacterial disorder","secondary_identifiers":["MEDGEN:928118","UMLS:C4302449"],"termid":"MONDO:0021673","xrefs":{"Monarch":{"xref_id":"0021673"}}}


id: GO:0002091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of receptor internalization.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of receptor internalization","termid":"GO:0002090"},{"relation_name":"is_a","term_name":"negative regulation of receptor-mediated endocytosis","termid":"GO:0048261"},{"relation_name":"negatively_regulates","term_name":"receptor internalization","termid":"GO:0031623"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of receptor internalization","synonyms":[{"name":"down regulation of receptor internalization","type":"exact"},{"name":"down-regulation of receptor internalization","type":"exact"},{"name":"downregulation of receptor internalization","type":"exact"},{"name":"inhibition of receptor internalization","type":"narrow"}],"termid":"GO:0002091"}


id: PBO:0081324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF114 antisense RNA 1","termid":"PBO:0081324"}


id: PBO:0074822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 19B","termid":"PBO:0074822"}


id: PBO:0068539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 142, pseudogene","termid":"PBO:0068539"}


id: PBO:0001821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER chaperone Rot1 (predicted)","termid":"PBO:0001821"}


id: GO:0102550
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + 2-methyl-6-geranylgeranyl-1,4-benzoquinol = S-adenosyl-L-homocysteine + 2,3-dimethyl-6-geranylgeranyl-1,4-benzoquinol + H+.","definition_xrefs":["GOC:pz","EC:2.1.1.295"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-14917","RHEA:38007"],"termid":"GO:0102550"}


id: GO:0070275
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The metabolic process in which ammonia (NH3) is oxidized to nitrite (NO2) in the presence of oxygen. Hydroxylamine is produced enzymatically, and, in the presence of pyruvate, forms pyruvic oxime in a spontaneous, non-enzymatic reaction; pyruvic oxime is then converted to nitrite.","definition_xrefs":["MetaCyc:PWY-2242"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ammonia oxidation","termid":"GO:0019329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"aerobic ammonia oxidation to nitrite via pyruvic oxime","termid":"GO:0070275"}


id: GO:0004505
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-phenylalanine + tetrahydrobiopterin + O2 = L-tyrosine + 4-alpha-hydroxytetrahydrobiopterin.","definition_xrefs":["RHEA:20273","PMID:4004813"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen","termid":"GO:0016714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"phenylalanine 4-monooxygenase activity","secondary_identifiers":["Reactome:R-HSA-71118","MetaCyc:RXN66-569","Reactome:R-HSA-5649483","EC:1.14.16.1"],"synonyms":[{"name":"L-phenylalanine,tetrahydrobiopterin:oxygen oxidoreductase (4-hydroxylating)","type":"related"},{"name":"PAH activity","type":"related"},{"name":"phenylalaninase activity","type":"related"},{"name":"phenylalanine 4-hydroxylase activity","type":"related"},{"name":"phenylalanine hydroxylase activity","type":"exact"}],"termid":"GO:0004505"}


id: GO:0014718
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of activation of satellite cell involved in skeletal muscle regeneration. The activation of satellite cell is the process that initiates satellite cell division by causing it to move from quiescence to the G1 stage of the cell cycle. The cell swells and there are a number of other small changes. The cells then start to divide. Following cell division the cells will differentiate.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of satellite cell activation involved in skeletal muscle regeneration","termid":"GO:0014717"},{"relation_name":"is_a","term_name":"positive regulation of skeletal muscle tissue regeneration","termid":"GO:0043415"},{"relation_name":"is_a","term_name":"positive regulation of cell activation","termid":"GO:0050867"},{"relation_name":"positively_regulates","term_name":"satellite cell activation involved in skeletal muscle regeneration","termid":"GO:0014901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of satellite cell activation involved in skeletal muscle regeneration","termid":"GO:0014718"}


id: GO:1900710
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of tensidol B biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ketone biosynthetic process","termid":"GO:0010566"},{"relation_name":"is_a","term_name":"regulation of amide metabolic process","termid":"GO:0034248"},{"relation_name":"is_a","term_name":"regulation of secondary metabolite biosynthetic process","termid":"GO:1900376"},{"relation_name":"regulates","term_name":"tensidol B biosynthetic process","termid":"GO:1900608"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"regulation of tensidol B biosynthetic process","synonyms":[{"name":"regulation of tensidol B anabolism","type":"exact"},{"name":"regulation of tensidol B biosynthesis","type":"exact"},{"name":"regulation of tensidol B formation","type":"exact"},{"name":"regulation of tensidol B synthesis","type":"exact"}],"termid":"GO:1900710"}


id: GO:0060567
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of DNA-dependent transcription termination, the process in which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.","definition_xrefs":["GOC:tb","GOC:txnOH","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of termination of DNA-templated transcription","termid":"GO:0031554"},{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex disassembly","termid":"GO:0043242"},{"relation_name":"is_a","term_name":"negative regulation of DNA-templated transcription","termid":"GO:0045892"},{"relation_name":"negatively_regulates","term_name":"DNA-templated transcription termination","termid":"GO:0006353"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"negatively_regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006355","GO:0010467","GO:0008150","GO:0006351"],"is_obsolete":false,"name":"negative regulation of termination of DNA-templated transcription","synonyms":[{"name":"negative regulation of DNA-dependent transcription, termination","type":"exact"},{"name":"negative regulation of DNA-templated transcription, termination","type":"exact"},{"name":"negative regulation of termination of DNA-dependent transcription","type":"exact"},{"name":"negative regulation of transcription termination, DNA-dependent","type":"exact"}],"termid":"GO:0060567"}


id: GO:0030775
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + glucuronoxylan D-glucuronate = S-adenosyl-L-homocysteine + glucuronoxylan 4-O-methyl-D-glucuronate.","definition_xrefs":["EC:2.1.1.112"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"glucuronoxylan 4-O-methyltransferase activity","secondary_identifiers":["MetaCyc:GLUCURONOXYLAN-4-O-METHYLTRANSFERASE-RXN","RHEA:20413"],"synonyms":[{"name":"S-adenosyl-L-methionine:glucuronoxylan-D-glucuronate 4-O-methyltransferase activity","type":"related"}],"termid":"GO:0030775"}


id: PBO:0046258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epididymal sperm binding protein 1","termid":"PBO:0046258"}


id: PBO:0011989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spliceosome complex disassembly protein Ntr2 (predicted)","termid":"PBO:0011989"}


id: GO:0097505
data:
  {"annotated_genes":["SJAG_00819"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[78812],"is_not":false,"summary":null,"term":"GO:0097505"}]},"cv_name":"cellular_component","definition":"A ubiquitin ligase complex found to be involved in post-replicative bypass of UV-damaged DNA and UV mutagenesis. In S. cerevisiae, the complex contains the ubiquitin conjugating enzyme Rad6 and Rad18, a protein containing a RING finger motif and a nucleotide binding motif. The yeast Rad6-Rad18 heterodimer has ubiquitin conjugating activity, binds single-stranded DNA, and possesses single-stranded DNA-dependent ATPase activity.","definition_xrefs":["PMID:9287349","GOC:jd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin ligase complex","termid":"GO:0000151"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00819":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Rad6-Rad18 complex","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0097505","terms_by_termid":{"GO:0097505":null}}


id: MONDO:0015615
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare genetic gastroenterological disease (obsolete MONDO:0015615)","secondary_identifiers":["Orphanet:165652"],"synonyms":[{"name":"rare genetic gastrointestinal system disease","type":"exact"}],"termid":"MONDO:0015615","xrefs":{"Monarch":{"xref_id":"0015615"}}}


id: MONDO:0010808
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fatal familial insomnia (FFI) is a very rare form of prion disease characterized by subacute onset of insomnia showing as a reduced overall sleep time, autonomic dysfunction, and motor disturbances.","definition_xrefs":["Orphanet:466"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prion disease","termid":"MONDO:0005429"},{"relation_name":"is_a","term_name":"insomnia","termid":"MONDO:0013600"},{"relation_name":"is_a","term_name":"inherited neurodegenerative disorder","termid":"MONDO:0024237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"fatal familial insomnia","secondary_identifiers":["icd11.foundation:669154658","NANDO:1200191","SCTID:83157008","GARD:6429","NORD:1920","MESH:D034062","ICD10CM:A81.83","ICD9:046.72","UMLS:C0206042","NCIT:C84711","DOID:0050433","MedDRA:10072077","MEDGEN:104768","OMIM:600072"],"synonyms":[{"name":"FFI","type":"related"},{"name":"Insomnia familial fatal","type":"related"},{"name":"Insomnia, fatal familial","type":"related"},{"name":"familial fatal insomnia","type":"related"},{"name":"fatal familial INSOMNIA","type":"related"},{"name":"fatal familial insomnia","type":"exact"}],"termid":"MONDO:0010808","xrefs":{"Monarch":{"xref_id":"0010808"}}}


id: GO:0102393
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: FAD + H+ + a decanoyl-HmqF protein = FADH2(2-) + a 2,3-dehydro-decanoyl-HmqF.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete decanoyl-[acp] 2-dehydrogenase activity (obsolete GO:0102393)","termid":"GO:0102393"}


id: PBO:0049546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B clustered histone 9","termid":"PBO:0049546"}


id: GO:0098672
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process by which a symbiont inhibits or disrupts the CRISPR-cas system of its host. Bacteria and archaea use CRISPR-Cas adaptive immune systems to defend themselves from infection by bacteriophages (phages), and phages have various mechanisms to counter the CRISPR-cas system.","definition_xrefs":["PMID:23242138","PMID:28749735","PMID:23446421","PMID:26416740"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host defense response","termid":"GO:0052031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host CRISPR-cas system","secondary_identifiers":["VZ:3962"],"synonyms":[{"name":"CRISPR-cas system evasion by virus","type":"exact"},{"name":"anti-CRISPR","type":"broad"},{"name":"evasion by virus of CRISPR-cas system","type":"related"},{"name":"inhibition of host CRISPR-cas system by virus","type":"related"},{"name":"suppression of host CRISPR-cas system","type":"exact"}],"termid":"GO:0098672"}


id: PBO:0046744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exocyst complex component 3","termid":"PBO:0046744"}


id: MONDO:0010021
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"benign neonatal seizures","termid":"MONDO:0016027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"seizures, benign familial neonatal, autosomal recessive","secondary_identifiers":["MEDGEN:338640","GARD:15234","OMIM:269720","MESH:C564823","UMLS:C1849250"],"synonyms":[{"name":"Bfns, autosomal recessive","type":"related"},{"name":"autosomal dominant form of benign neonatal seizures","type":"related"},{"name":"convulsions benign familial neonatal dominant form","type":"related"},{"name":"convulsions, benign familial neonatal, autosomal recessive","type":"related"},{"name":"epilepsy, benign familial neonatal, autosomal recessive","type":"related"},{"name":"seizures, benign familial neonatal, autosomal recessive","type":"exact"}],"termid":"MONDO:0010021","xrefs":{"Monarch":{"xref_id":"0010021"}}}


id: MONDO:0009194
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare progressive disease that begins as a primary Epstein-Barr virus (EBV) infection. In this type of infection, the body makes too many lymphocytes (lymphoproliferative disease) for a period of more than 6 months duration. Lymphocytes are a type of white blood cell. They are an importantpart ofthe immune system because they help fight off diseases and protect the body from infection byproducing antibodies against viruses or bacteria and regulating immune responses. In CAEBV there are many antibodies againstEBV in the blood.Most people (about 95% of adults) get infected with EBV at some point in their lives, and never have any health problems.However, EBV can cause infectiousmononucleosis and other illnesses, and has a role in various autoimmune diseases and some types of cancer. While most infections occurring during childhood do not cause any symptoms,EBV infection in adolescents or young adults can often result in mononucleosis.After an EBV infection, the virus becomes latent (inactive) in the body, and, in some cases, the virus may reactivate. This does not always cause symptoms, but people with weakened immune systems are more likely to develop symptoms if EBV reactivates.In rare cases, people infected with EBV develop chronic active EBV virus infection(CAEBV) without apparent immunodeficiency. Most cases of CAEBV have been reported from Japan. These patientshave some of the complications found in otherwise-healthy patients with acute EBV infection, but unlike healthy patients, these complications persist and progress. Symptoms of CAEBV most often include fever, liverdysfunction, an enlarged spleen (splenomegaly), swollen lymph nodes (lymphadenopathy), and low numbers of platelets (thrombocytopenia) as well as high EBV-DNA load in the blood. Other features that appear in more than 10% of patients include enlarged liver (hepatomegaly), anemia, hypersensitivity to mosquito bites, rash, oral ulcers, hemophagocytic syndrome, coronary artery aneurysms, liver failure, lymphoma, and interstitial pneumonia. While the cause is yet unknown, researchers have identified defects in T cells or natural killer (NK) cells activity which results in a decreased defense against the EBV in people with CAEBV.It is important to note that the fatigue and malaise from acute infectious mononucleosis (IM)varies from mild symptoms lasting only a few weeks, to more severe symptoms of fatigue that can persist for several months, or even up to a year or more in up to 10% of patients (which may be considered a less severe form of chronicEBV infection). The persistence of fatigue that is seen in some patients after acute IM would lead some people to believe that EBV may also cause cases of chronic fatigue syndrome (CFS). However, no convincing link has been found between EBV and CFS.Hematopoietic stemcell transplantation has shown promise in the treatment of CAEBV.","definition_xrefs":["GARD:0009534"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"viral infectious disease","termid":"MONDO:0005108"},{"relation_name":"is_a","term_name":"post-viral disorder","termid":"MONDO:0021674"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunodeficiency 32B","secondary_identifiers":["Orphanet:2566","OMIM:614894","MEDGEN:865178","GARD:9534","DOID:0111985","UMLS:C4016741","NANDO:2200808","OMIM:226990"],"synonyms":[{"name":"CAEBV infection","type":"related"},{"name":"CAEBV syndrome","type":"exact"},{"name":"CEBV","type":"related"},{"name":"Epstein-Barr VIRUS, susceptibility to chronic infection by","type":"related"},{"name":"IMD32B","type":"exact"},{"name":"IRF8 deficiency, autosomal recessive","type":"exact"},{"name":"chronic EBV infection syndrome","type":"exact"},{"name":"chronic Epstein-Barr virus infection syndrome","type":"exact"},{"name":"chronic active Epstein-Barr disease","type":"related"},{"name":"chronic active Epstein-Barr virus infection","type":"related"},{"name":"immunodeficiency 32B","type":"exact"},{"name":"immunodeficiency 32B, monocyte and dendritic cell deficiency, autosomal recessive","type":"exact"},{"name":"immunodeficiency 32B, monocyte, Dendritic cell, and natural Killer cell deficiency, autosomal recessive","type":"exact"},{"name":"monocyte and dendritic cell deficiency, autosomal recessive","type":"exact"}],"termid":"MONDO:0009194","xrefs":{"Monarch":{"xref_id":"0009194"}}}


id: MONDO:0017872
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lujo hemorrhagic fever, caused by the Lujo virus (a newly discovered Old World arenavirus) is a zoonotic disease from Zambia, Africa, whose reservoir is unknown and is characterized by fever and hemorrhagic manifestations with an extremely high fatality rate of 80% (in the 5 reported cases to date) and a moderate to high level of nosocomial transmission.","definition_xrefs":["Orphanet:319213"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral hemorrhagic fever","termid":"MONDO:0018087"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lujo hemorrhagic fever","secondary_identifiers":["MEDGEN:905662","DOID:0050202","SCTID:716585008","GARD:21410","UMLS:C4274433"],"synonyms":[{"name":"Zambian hemorrhagic fever","type":"exact"}],"termid":"MONDO:0017872","xrefs":{"Monarch":{"xref_id":"0017872"}}}


id: MOD:01197
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamine residue to N-heptosyl-L-glutamine.","definition_xrefs":["Unimod:490#Q"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heptosylated residue","termid":"MOD:00925"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"N-heptosyl-L-glutamine","synonyms":[{"name":"Hep","type":"related"},{"name":"Heptose","type":"related"}],"termid":"MOD:01197"}


id: MONDO:0003161
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete benign ependymoma (obsolete MONDO:0003161)","termid":"MONDO:0003161","xrefs":{"Monarch":{"xref_id":"0003161"}}}


id: PR:Q9URX6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 60S ribosomal protein L31 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02089","PANTHER:PTHR10956:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L31 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC890.08","secondary_identifiers":["UniProtKB:Q9URX6"],"synonyms":[{"name":"Spom972h-RPL31","type":"exact"}],"termid":"PR:Q9URX6"}


id: GO:0003727
data:
  {"annotated_genes":["SJAG_03747","SJAG_00857","SJAG_00425","SJAG_05240","SJAG_03460","SJAG_03214","SJAG_04427","SJAG_04880","SJAG_03995","SJAG_04601","SJAG_03283","SJAG_04271","SJAG_03954","SJAG_03448","SJAG_01643","SJAG_02043","SJAG_01222","SJAG_00884","SJAG_02621","SJAG_02790","SJAG_04210","SJAG_02469","SJAG_01436","SJAG_05010","SJAG_03916","SJAG_04574","SJAG_03876","SJAG_02808","SJAG_01650","SJAG_00145","SJAG_03745","SJAG_01910","SJAG_01327"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71458,72305,74415,78077,78766,93049,93334,108246,109062,112327,117127],"is_not":false,"summary":null,"term":"GO:0003727"},{"annotations":[90855,91263,77863,74698,76309,91221,71920,79397,98893,99330,80536,72285],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008143"},{"annotations":[97409,111757,114726,116781,98894,96945,118249,72286,80537,91264,97608,76310,74699,108159],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008266"},{"annotations":[73882],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008187"},{"annotations":[109124],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033592"}]},"cv_name":"molecular_function","definition":"Binding to single-stranded RNA.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA binding","termid":"GO:0003723"}],"gene_count":33,"genes_by_uniquename":{"SJAG_00145":null,"SJAG_00425":null,"SJAG_00857":null,"SJAG_00884":null,"SJAG_01222":null,"SJAG_01327":null,"SJAG_01436":null,"SJAG_01643":null,"SJAG_01650":null,"SJAG_01910":null,"SJAG_02043":null,"SJAG_02469":null,"SJAG_02621":null,"SJAG_02790":null,"SJAG_02808":null,"SJAG_03214":null,"SJAG_03283":null,"SJAG_03448":null,"SJAG_03460":null,"SJAG_03745":null,"SJAG_03747":null,"SJAG_03876":null,"SJAG_03916":null,"SJAG_03954":null,"SJAG_03995":null,"SJAG_04210":null,"SJAG_04271":null,"SJAG_04427":null,"SJAG_04574":null,"SJAG_04601":null,"SJAG_04880":null,"SJAG_05010":null,"SJAG_05240":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003723","GO:0003674"],"is_obsolete":false,"name":"single-stranded RNA binding","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0003728"],"synonyms":[{"name":"ssRNA binding","type":"exact"}],"termid":"GO:0003727","terms_by_termid":{"GO:0003727":null,"GO:0008143":null,"GO:0008187":null,"GO:0008266":null,"GO:0033592":null}}


id: GO:0060774
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals generated in response to detection of auxin that contributes to the radial pattern formation process resulting in the formation of leaf or flower primordia around the center of a shoot apical meristem.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete auxin mediated signaling pathway involved in phyllotactic patterning (obsolete GO:0060774)","synonyms":[{"name":"auxin mediated signalling pathway involved in phyllotactic patterning","type":"exact"}],"termid":"GO:0060774"}


id: MONDO:0020091
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete male infertility due to obstructive azoospermia (obsolete MONDO:0020091)","secondary_identifiers":["Orphanet:98343"],"synonyms":[{"name":"Male infertility due to impaired sperm transport","type":"exact"}],"termid":"MONDO:0020091","xrefs":{"Monarch":{"xref_id":"0020091"}}}


id: MONDO:0014559
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"movement disorder","termid":"MONDO:0005395"},{"relation_name":"is_a","term_name":"inborn disorder of amino acid transport","termid":"MONDO:0019216"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"progressive essential tremor-speech impairment-facial dysmorphism-intellectual disability-abnormal behavior syndrome","secondary_identifiers":["OMIM:616269","GARD:17798","UMLS:C4225395","Orphanet:457212","MEDGEN:895952","DOID:0081212"],"synonyms":[{"name":"MRT48","type":"related"},{"name":"intellectual disability, autosomal recessive 48","type":"related"},{"name":"intellectual disability, autosomal recessive type 48","type":"exact"},{"name":"mental retardation, autosomal recessive 48","type":"related"},{"name":"mental retardation, autosomal recessive type 48","type":"exact"}],"termid":"MONDO:0014559","xrefs":{"Monarch":{"xref_id":"0014559"}}}


id: PBO:0074736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 94","termid":"PBO:0074736"}


id: PATO:0000221
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000221 urination (obsolete PATO:0000221)","termid":"PATO:0000221"}


id: MONDO:0005104
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cancer cells are given a score of 1 to 3, with 1 being assigned when they look similar to normal cells and 3 being used when the cancer cells look very abnormal. Certain types of sarcoma are given a higher score automatically. See also NCIt:C9419 (Synonym of AJCC G1 Sarcoma)","definition_xrefs":["EFO:0000737"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sarcoma","termid":"MONDO:0005089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"aJCC grade 1 sarcoma","secondary_identifiers":["NCIT:C9419"],"synonyms":[{"name":"aJCC G1 sarcoma","type":"related"},{"name":"aJCC grade 1 sarcoma","type":"exact"},{"name":"aJCC grade I sarcoma","type":"related"},{"name":"well differentiated sarcoma","type":"related"}],"termid":"MONDO:0005104","xrefs":{"Monarch":{"xref_id":"0005104"}}}


id: PBO:0082822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Conserved nuclear protein that interacts with GTP-Gsp1p; stimulates nucleotide release from Gsp1p; involved in nuclear protein import; nucleotide release is inhibited by Yrb1p","termid":"PBO:0082822"}


id: PBO:0026761
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_degradation_during_cellular_response_to_UV","termid":"PBO:0026761"}


id: FYECO:0000084
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which glutamate was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ glutamate","termid":"FYECO:0000084"}


id: MONDO:0005105
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant, usually aggressive tumor composed of atypical, neoplastic melanocytes. Most often, melanomas arise in the skin (cutaneous melanomas) and include the following histologic subtypes: superficial spreading melanoma, nodular melanoma, acral lentiginous melanoma, and lentigo maligna melanoma. Cutaneous melanomas may arise from acquired or congenital melanocytic or dysplastic nevi. Melanomas may also arise in other anatomic sites including the gastrointestinal system, eye, urinary tract, and reproductive system. Melanomas frequently metastasize to lymph nodes, liver, lungs, and brain.","definition_xrefs":["NCIT:C3224"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"neuroendocrine neoplasm","termid":"MONDO:0019496"},{"relation_name":"is_a","term_name":"melanocytic neoplasm","termid":"MONDO:0021143"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanoma","secondary_identifiers":["UMLS:C0025202","HP:0002861","Orphanet:411533","ICDO:8720/3","MESH:D008545","EFO:0000756","DOID:1909","NANDO:2200077","MEDGEN:9944","SCTID:372244006","ONCOTREE:MEL"],"synonyms":[{"name":"Naevocarcinoma","type":"exact"},{"name":"malignant melanoma","type":"exact"},{"name":"melanoma","type":"exact"},{"name":"melanoma (disease)","type":"exact"},{"name":"melanoma, malignant","type":"exact"}],"termid":"MONDO:0005105","xrefs":{"Monarch":{"xref_id":"0005105"}}}


id: GO:1990938
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The phosphorylation by a protein of one or more of its own aspartate amino acid residues, or an aspartate residue on an identical protein.","definition_xrefs":["GOC:bf","GOC:PARL","PMID:26134396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-aspartic acid phosphorylation","termid":"GO:0018217"},{"relation_name":"is_a","term_name":"protein autophosphorylation","termid":"GO:0046777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-aspartic acid autophosphorylation","synonyms":[{"name":"aspartyl autophosphorylation","type":"exact"},{"name":"peptidyl-aspartate autophosphorylation","type":"exact"}],"termid":"GO:1990938"}


id: PBO:0053141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactate dehydrogenase A like 6C, pseudogene","termid":"PBO:0053141"}


id: MONDO:1011190
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spinal stenosis that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spinal stenosis, non-human animal","termid":"MONDO:1010303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spinal stenosis, cattle","secondary_identifiers":["OMIA:000947-9913"],"termid":"MONDO:1011190","xrefs":{"Monarch":{"xref_id":"1011190"}}}


id: GO:0032873
data:
  {"annotated_genes":["SJAG_01114","SJAG_04522","SJAG_04825","SJAG_02392","SJAG_05000","SJAG_03263"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108856,120182,97632,109423,101222,105596],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903138"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of stress-activated MAPK cascade","termid":"GO:0032872"},{"relation_name":"is_a","term_name":"negative regulation of MAPK cascade","termid":"GO:0043409"},{"relation_name":"is_a","term_name":"negative regulation of stress-activated protein kinase signaling cascade","termid":"GO:0070303"},{"relation_name":"negatively_regulates","term_name":"stress-activated MAPK cascade","termid":"GO:0051403"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01114":null,"SJAG_02392":null,"SJAG_03263":null,"SJAG_04522":null,"SJAG_04825":null,"SJAG_05000":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of stress-activated MAPK cascade","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of stress-activated MAPK cascade","type":"exact"},{"name":"down-regulation of stress-activated MAPK cascade","type":"exact"},{"name":"downregulation of stress-activated MAPK cascade","type":"exact"},{"name":"inhibition of stress-activated MAPK cascade","type":"narrow"},{"name":"negative regulation of p38 MAPK signaling","type":"exact"},{"name":"negative regulation of p38 MAPK signalling","type":"exact"},{"name":"negative regulation of stress-activated MAPK signaling pathway","type":"exact"},{"name":"negative regulation of stress-activated MAPK signalling pathway","type":"exact"},{"name":"negative regulation of stress-activated MAPKKK cascade","type":"exact"},{"name":"negative regulation of stress-activated MAPKKK signaling pathway","type":"exact"},{"name":"negative regulation of stress-activated MAPKKK signalling pathway","type":"exact"}],"termid":"GO:0032873","terms_by_termid":{"GO:1903138":null}}


id: MONDO:0018189
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive cerebellar ataxia-pyramidal signs-nystagmus-oculomotor apraxia syndrome is a rare, genetic, slowly progressive neurodegenerative disease characterized by delayed psychomotor development beginning in infancy, mild to profound intellectual disability, gait and stance ataxia, pyramidal signs (hyperreflexia, extensor plantar responses), dysarthria, and ocular abnormalities (e.g. nystagmus, oculomotor apraxia, abduction deficits, esotropia, ptosis). Brain imaging reveals progressive, generalized cerebellar atrophy, mild ventriculomegaly and, in some, retrocerebellar cysts.","definition_xrefs":["Orphanet:363429"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of amino acid transport","termid":"MONDO:0019216"},{"relation_name":"is_a","term_name":"autosomal recessive metabolic cerebellar ataxia","termid":"MONDO:0020044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005559","MONDO:0006025","MONDO:0004736"],"is_obsolete":false,"name":"autosomal recessive cerebellar ataxia - pyramidal signs - nystagmus - oculomotor apraxia syndrome","secondary_identifiers":["UMLS:C4706388","GARD:17556","MEDGEN:1644588"],"termid":"MONDO:0018189","xrefs":{"Monarch":{"xref_id":"0018189"}}}


id: PBO:0051799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IQ motif containing GTPase activating protein 1","termid":"PBO:0051799"}


id: PBO:0056623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MED4 antisense RNA 1","termid":"PBO:0056623"}


id: PBO:0070962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18a pseudogene 17","termid":"PBO:0070962"}


id: PBO:0057980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3907","termid":"PBO:0057980"}


id: GO:0050017
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-cysteine + HCN = sulfide + L-3-cyanoalanine.","definition_xrefs":["MetaCyc:L-3-CYANOALANINE-SYNTHASE-RXN","EC:4.4.1.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-sulfur lyase activity","termid":"GO:0016846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"L-3-cyanoalanine synthase activity","secondary_identifiers":["RHEA:17821"],"synonyms":[{"name":"L-cysteine hydrogen-sulfide-lyase (adding HCN)","type":"related"},{"name":"L-cysteine hydrogen-sulfide-lyase (adding hydrogen cyanide; L-3-cyanoalanine-forming)","type":"related"},{"name":"beta-cyano-L-alanine synthase activity","type":"related"},{"name":"beta-cyanoalanine synthase activity","type":"related"},{"name":"beta-cyanoalanine synthetase activity","type":"related"}],"termid":"GO:0050017"}


id: GO:0031262
data:
  {"annotated_genes":["SJAG_02814","SJAG_04076","SJAG_03683","SJAG_00794"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[76578,77402,77564,78832],"is_not":false,"summary":null,"term":"GO:0031262"}]},"cv_name":"cellular_component","definition":"An essential outer kinetochore complex involved in the attachment of microtubule ends to the chromosomes during mitosis.","definition_xrefs":["PMID:28502666","PMID:34810257","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"outer kinetochore","termid":"GO:0000940"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00794":null,"SJAG_02814":null,"SJAG_03683":null,"SJAG_04076":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0000776"}],"interesting_parent_ids":["GO:0032991","GO:0000776","GO:0005694","GO:0005575"],"is_obsolete":false,"name":"Ndc80 complex","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"Nuf2-Ndc80 complex","type":"exact"}],"termid":"GO:0031262","terms_by_termid":{"GO:0031262":null}}


id: GO:0052816
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a long-chain fatty acyl-CoA + H2O = a long-chain fatty acid + CoA + H+. A long-chain fatty acid has an aliphatic tail containing 13 to 22 carbons.","definition_xrefs":["RHEA:67680"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acyl-CoA hydrolase activity","termid":"GO:0047617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016788","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"long-chain fatty acyl-CoA hydrolase activity","synonyms":[{"name":"long-chain acyl coenzyme A hydrolase activity","type":"related"},{"name":"long-chain acyl-thioester hydrolase activity","type":"related"},{"name":"long-chain hydrolase activity","type":"related"},{"name":"long-chain-acyl-CoA hydrolase activity","type":"related"}],"termid":"GO:0052816"}


id: PBO:0043440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calponin 2","termid":"PBO:0043440"}


id: PBO:0060766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B4 pseudogene 10","termid":"PBO:0060766"}


id: MONDO:0012915
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chromosome 1q21.1 duplication syndrome is a rare condition caused by the presence of an extra copy of a small piece of chromosome 1 in the cells of the body. Signs and symptoms can vary widely among affected individuals. Some individuals have no symptoms, while others may have features such as a large head size (macrocephaly); mild to moderate developmental delay and learning difficulties; autism or autistic-like behavior; heart problems; seizures; and/or and distinctive facial features. This condition can occur sporadically as a de novo mutation (by chance) or can be inherited in an autosomal dominant manner from a parent. Treatment depends on the signs and symptoms present in each individual.","direct_ancestors":[{"relation_name":"is_a","term_name":"partial duplication of the long arm of chromosome 1","termid":"MONDO:0016952"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 1q21.1 duplication syndrome","secondary_identifiers":["MEDGEN:382715","DOID:0060435","Orphanet:250994","MESH:C567290","OMIM:612475","UMLS:C2675891","GARD:10591","DECIPHER:67"],"synonyms":[{"name":"1q21.1 microduplication syndrome","type":"exact"},{"name":"1q21.1 recurrent microduplication (possible susceptibility locus for neurodevelopmental disorders)","type":"exact"},{"name":"chromosome 1q21.1 duplication syndrome","type":"exact"},{"name":"chromosome 1q21.1 duplication syndrome, isolated cases","type":"exact"},{"name":"dup(1)(q21.1)","type":"exact"},{"name":"trisomy 1q21.1","type":"exact"}],"termid":"MONDO:0012915","xrefs":{"Monarch":{"xref_id":"0012915"}}}


id: GO:0009279
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.","definition_xrefs":["GOC:md","GOC:mtg_sensu","ISBN:0135712254"],"direct_ancestors":[{"relation_name":"is_a","term_name":"outer membrane","termid":"GO:0019867"},{"relation_name":"part_of","term_name":"external encapsulating structure","termid":"GO:0030312"},{"relation_name":"part_of","term_name":"cell envelope","termid":"GO:0030313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cell outer membrane","synonyms":[{"name":"outer membrane of cell","type":"exact"}],"termid":"GO:0009279"}


id: GO:0102854
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-18:2-2-18:1-phosphatidylcholine + O2 + a reduced electron acceptor = 1-18:3-2-18:1-phosphatidylcholine + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-18:2-2-18:1-phosphatidylcholine desaturase activity (obsolete GO:0102854)","termid":"GO:0102854"}


id: GO:0050272
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-chloro-L-alanine + thioglycolate = S-carboxymethyl-L-cysteine + chloride + H+.","definition_xrefs":["EC:4.5.1.5","RHEA:22868"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-halide lyase activity","termid":"GO:0016848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"S-carboxymethylcysteine synthase activity","secondary_identifiers":["KEGG_REACTION:R04003","MetaCyc:S-CARBOXYMETHYLCYSTEINE-SYNTHASE-RXN"],"synonyms":[{"name":"3-chloro-L-alanine chloride-lyase (adding thioglycolate)","type":"related"},{"name":"3-chloro-L-alanine chloride-lyase (adding thioglycolate; S-carboxymethyl-L-cysteine-forming)","type":"related"},{"name":"S-carboxymethyl-L-cysteine synthase activity","type":"related"}],"termid":"GO:0050272"}


id: PBO:0040468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase mitochondrial F1 complex assembly factor 2","termid":"PBO:0040468"}


id: MONDO:0021750
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pus within the collecting system of the kidney.","definition_xrefs":["NCIT:C123032"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney disorder","termid":"MONDO:0005240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"pyonephrosis","secondary_identifiers":["UMLS:C0034216","SCTID:48631008","icd11.foundation:809412333","ICD10CM:N13.6","MESH:D053018","MEDGEN:11051"],"synonyms":[{"name":"Hydronephrosis, Infected","type":"related"},{"name":"Infected Hydronephrosis","type":"related"},{"name":"Pyonephrosis","type":"related"},{"name":"pyonephrosis","type":"exact"}],"termid":"MONDO:0021750","xrefs":{"Monarch":{"xref_id":"0021750"}}}


id: GO:0019119
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: phenanthrene-9,10-oxide + H2O = trans-9,10-dihydrodiolphenanthrene.","definition_xrefs":["UM-BBD_reactionID:r0560","GOC:mah","UM-BBD_reactionID:r0496"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenanthrene-epoxide hydrolase activity","termid":"GO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"phenanthrene-9,10-epoxide hydrolase activity","termid":"GO:0019119"}


id: PBO:0005660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase I upstream activation factor complex subunit Spp27","termid":"PBO:0005660"}


id: GO:0030081
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Protein-pigment complex that absorbs light at 800 and 820 nm; is peripherally associated to the bacterial reaction center; transfers excitation energy to the B875 antenna complex.","definition_xrefs":["GOC:kd","GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"light-harvesting complex, peripheral complex","termid":"GO:0030079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"B800-820 antenna complex","synonyms":[{"name":"LH3 complex","type":"exact"},{"name":"light harvesting complex III","type":"exact"}],"termid":"GO:0030081"}


id: MONDO:1010569
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Diabetes insipidus that occurs in horse.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diabetes insipidus, non-human animal","termid":"MONDO:1010051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diabetes insipidus, horse","secondary_identifiers":["OMIA:000278-9796"],"termid":"MONDO:1010569","xrefs":{"Monarch":{"xref_id":"1010569"}}}


id: MONDO:0003191
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An exceptionally rare adenocarcinoma that arises from the rete ovarii.","definition_xrefs":["NCIT:C40017"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ovarian adenocarcinoma","termid":"MONDO:0002752"},{"relation_name":"is_a","term_name":"rete ovarii neoplasm","termid":"MONDO:0003192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"rete ovarii adenocarcinoma","secondary_identifiers":["MEDGEN:826068","UMLS:C3840223","DOID:4894"],"synonyms":[{"name":"rete ovarii adenocarcinoma","type":"exact"}],"termid":"MONDO:0003191","xrefs":{"Monarch":{"xref_id":"0003191"}}}


id: PATO:0002288
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An elasticity which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"elastic","termid":"PATO:0001171"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased elasticity","termid":"PATO:0002288"}


id: MONDO:0040654
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant form of oculocutaneous albinism.","definition_xrefs":["MONDO:patterns/autosomal_dominant"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"oculocutaneous albinism","termid":"MONDO:0018910"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005093","MONDO:0000426"],"is_obsolete":false,"name":"autosomal dominant oculocutaneous albinism","secondary_identifiers":["MEDGEN:541335","UMLS:C0268499","SCTID:79417003"],"synonyms":[{"name":"autosomal dominant oculocutaneous albinism","type":"exact"},{"name":"oculocutaneous albinism, autosomal dominant","type":"exact"}],"termid":"MONDO:0040654","xrefs":{"Monarch":{"xref_id":"0040654"}}}


id: MONDO:0009442
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ichthyosis congenita with biliary atresia","secondary_identifiers":["MESH:C562886","SCTID:235916001","MEDGEN:140780","UMLS:C0400974","OMIM:242400"],"synonyms":[{"name":"congenital ichthyosis with biliary atresia","type":"related"},{"name":"ichthyosis congenita biliary atresia","type":"related"},{"name":"ichthyosis congenita with biliary atresia","type":"exact"}],"termid":"MONDO:0009442","xrefs":{"Monarch":{"xref_id":"0009442"}}}


id: PBO:0117391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AZIN1 antisense RNA 2","termid":"PBO:0117391"}


id: PBO:0039803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor 1 pseudogene 1","termid":"PBO:0039803"}


id: MOD:01194
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["PubMed:15279557","Unimod:264#S"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorylation to pyridyl thiol","termid":"MOD:00586"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphorylation to pyridyl thiol - site S","synonyms":[{"name":"PET","type":"related"},{"name":"phosphorylation to pyridyl thiol","type":"related"}],"termid":"MOD:01194"}


id: PBO:0088633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CAAX prenyl protease","termid":"PBO:0088633"}


id: PBO:0076856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TET2 antisense RNA 1","termid":"PBO:0076856"}


id: PBO:0085463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Predicted tail-anchored plasma membrane protein; contains a conserved CYSTM module; related proteins in other organisms may be involved in response to stress; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery","termid":"PBO:0085463"}


id: PBO:0084089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Guanine nucleotide exchange factor (GEF); involved in vesicle-mediated vacuolar transport, including Golgi-endosome trafficking and sorting through the multivesicular body (MVB); specifically stimulates the intrinsic guanine nucleotide exchange activity of Rab family members (Vps21p/Ypt52p/Ypt53p); partially redundant with GEF VPS9; required for localization of the CORVET complex to endosomes; contains a VPS9 domain","termid":"PBO:0084089"}


id: SO:0001079
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Motif is a three-dimensional structural element within the chain, which appears also in a variety of other molecules. Unlike a domain, a motif does not need to form a stable globular unit.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_structural_region","termid":"SO:0001070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_structural_motif","secondary_identifiers":["BS:0000338","http://en.wikipedia.org/wiki/Structural_motif"],"synonyms":[{"name":"polypeptide structural motif","type":"related"},{"name":"structural_motif","type":"related"}],"termid":"SO:0001079"}


id: PBO:0089130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal recognition particle receptor alpha subunit Srp101","termid":"PBO:0089130"}


id: PBO:0043383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clavesin 1","termid":"PBO:0043383"}


id: MONDO:0037870
data:
  {"annotated_genes":["SJAG_00944"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87452],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009603"}]},"cv_name":"mondo","definition":"A disease that has its basis in the disruption of valine metabolic process.","definition_xrefs":["MONDO:design_pattern"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid metabolism disease","termid":"MONDO:0037871"},{"relation_name":"is_a","term_name":"disorder of organic acid metabolism","termid":"MONDO:0045022"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00944":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"valine metabolism disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:444756000","UMLS:C2919304","MEDGEN:753614"],"synonyms":[{"name":"disorder of valine metabolic process","type":"exact"},{"name":"disorder of valine metabolism","type":"exact"},{"name":"valine metabolic process disease","type":"exact"}],"termid":"MONDO:0037870","terms_by_termid":{"MONDO:0009603":null},"xrefs":{"Monarch":{"xref_id":"0037870"}}}


id: MONDO:0001357
data:
  {"annotated_genes":["SJAG_01007"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86827],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008787"}]},"cv_name":"mondo","definition":"Anemia caused by the reduction of hemoglobin in relation to the red cell volume. As a result, the red cells have an area of central pallor which is increased in size. The leading cause is iron deficiency.","definition_xrefs":["NCIT:C34380"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anemia","termid":"MONDO:0002280"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01007":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570"],"is_obsolete":false,"name":"hypochromic anemia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["HP:0001931","DOID:11759","SCTID:44452003","MEDGEN:8065","UMLS:C0002884"],"synonyms":[{"name":"anaemia hypochromic","type":"exact"},{"name":"anemia hypochromic","type":"exact"},{"name":"hypochromic anaemia (disease)","type":"exact"},{"name":"hypochromic anemia","type":"exact"},{"name":"hypochromic anemia (disease)","type":"exact"}],"termid":"MONDO:0001357","terms_by_termid":{"MONDO:0008787":null},"xrefs":{"Monarch":{"xref_id":"0001357"}}}


id: GO:0046855
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of removing a phosphate group from any mono- or polyphosphorylated inositol.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete inositol phosphate dephosphorylation (obsolete GO:0046855)","synonyms":[{"name":"myo-inositol phosphate dephosphorylation","type":"narrow"}],"termid":"GO:0046855"}


id: MONDO:0011218
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete autosomal ichthyosis syndrome with prominent hair abnormalities (obsolete MONDO:0017271)","termid":"MONDO:0017271"},{"relation_name":"is_a","term_name":"autosomal recessive congenital ichthyosis","termid":"MONDO:0017265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"autosomal recessive congenital ichthyosis 11","secondary_identifiers":["OMIM:602400","Orphanet:91132","MEDGEN:332073","DOID:0060720","GARD:10116","MESH:C536273","UMLS:C1835851"],"synonyms":[{"name":"ARCI11","type":"related"},{"name":"ARIH","type":"related"},{"name":"IFAH syndrome","type":"exact"},{"name":"IHS","type":"exact"},{"name":"autosomal recessive congenital ichthyosis 11","type":"exact"},{"name":"autosomal recessive congenital ichthyosis type 11","type":"exact"},{"name":"autosomal recessive ichthyosis with hypotrichosis","type":"exact"},{"name":"hypotrichosis-congenital ichthyosis syndrome","type":"exact"},{"name":"ichthyosis and follicular atrophoderma with hypotrichosis and hypohidrosis","type":"exact"},{"name":"ichthyosis with hypotrichosis, autosomal recessive","type":"related"},{"name":"ichthyosis, congenital, autosomal recessive 11","type":"related"},{"name":"ichthyosis, congenital, autosomal recessive type 11","type":"exact"},{"name":"ichthyosis-follicular atrophoderma-hypotrichosis syndrome","type":"exact"},{"name":"ichthyosis-follicular atrophoderma-hypotrichosis-hypohidrosis syndrome","type":"exact"},{"name":"ichthyosis-hypotrichosis syndrome","type":"exact"}],"termid":"MONDO:0011218","xrefs":{"Monarch":{"xref_id":"0011218"}}}


id: MONDO:0016364
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Joubert syndrome with ocular defect is, along with pure JS, the most frequent subtype of Joubert syndrome and related disorders (JSRD) characterized by the neurological features of JS associated with retinal dystrophy.","definition_xrefs":["Orphanet:220493"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete neuro-ophthalmological disease (obsolete MONDO:0015368)","termid":"MONDO:0015368"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"Joubert syndrome and related disorders","termid":"MONDO:0015369"},{"relation_name":"is_a","term_name":"central nervous system malformation","termid":"MONDO:0020022"},{"relation_name":"is_a","term_name":"disorder of visual system","termid":"MONDO:0024458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0020022"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005559","MONDO:0020022"],"is_obsolete":false,"name":"Joubert syndrome with ocular defect","secondary_identifiers":["SCTID:716998009","UMLS:C4274118","GARD:10168","ICD10CM:H35.5","MEDGEN:909607","icd11.foundation:1358617785"],"synonyms":[{"name":"JBTS3","type":"related"},{"name":"JS-O","type":"exact"},{"name":"Joubert syndrome 3","type":"related"},{"name":"Joubert syndrome with ocular anomalies","type":"related"},{"name":"Joubert syndrome with retinopathy","type":"exact"}],"termid":"MONDO:0016364","xrefs":{"Monarch":{"xref_id":"0016364"}}}


id: MONDO:0030927
data:
  {"annotated_genes":["SJAG_00750"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87330],"is_not":false,"summary":null,"term":"MONDO:0030927"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myofibrillar myopathy","termid":"MONDO:0018943"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00750":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"myofibrillar myopathy 11","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1782465","UMLS:C5543038","DOID:0081338","OMIM:619178"],"synonyms":[{"name":"MFM11","type":"exact"},{"name":"myofibrillar myopathy 11","type":"exact"},{"name":"myopathy, congenital, with eccentric cores","type":"exact"}],"termid":"MONDO:0030927","terms_by_termid":{"MONDO:0030927":null},"xrefs":{"Monarch":{"xref_id":"0030927"}}}


id: PBO:0070058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 15, pseudogene","termid":"PBO:0070058"}


id: PBO:0091024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromo/chromo shadow domain family","termid":"PBO:0091024"}


id: FYPO:0006030
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the cell does not contain detectable actin cortical patches.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin cortical patches present in decreased numbers","termid":"FYPO:0004964"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0004803","FYPO:0001320"],"is_obsolete":false,"name":"actin cortical patches absent from cell","synonyms":[{"name":"absent actin cortical patches","type":"exact"},{"name":"actin cortical patches absent from cell during mitotic cell cycle","type":"related"},{"name":"actin cortical patches absent from cell during vegetative growth","type":"exact"},{"name":"actin patches absent from cell","type":"exact"}],"termid":"FYPO:0006030"}


id: GO:0033408
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes a UCG codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0003723","GO:0060090"],"is_obsolete":false,"name":"UCG codon-amino acid adaptor activity","synonyms":[{"name":"TCG codon-amino acid adaptor activity","type":"exact"},{"name":"serine tRNA","type":"related"}],"termid":"GO:0033408"}


id: PBO:0062843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteoclast stimulating factor 1","termid":"PBO:0062843"}


id: GO:2000209
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of anoikis.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic process","termid":"GO:0042981"},{"relation_name":"regulates","term_name":"anoikis","termid":"GO:0043276"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of anoikis","synonyms":[{"name":"regulation of detachment induced cell death","type":"exact"},{"name":"regulation of suspension induced apoptosis","type":"exact"}],"termid":"GO:2000209"}


id: MONDO:0003092
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An extremely rare carcinoma that arises from the lacrimal gland. It is characterized by the presence of infiltrating nests of epidermoid cells and mucus producing cells.","definition_xrefs":["NCIT:C6091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lacrimal gland adenocarcinoma","termid":"MONDO:0002475"},{"relation_name":"is_a","term_name":"mucoepidermoid carcinoma","termid":"MONDO:0003036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0004992"],"is_obsolete":false,"name":"lacrimal gland mucoepidermoid carcinoma","secondary_identifiers":["MEDGEN:235248","UMLS:C1334359","DOID:4685"],"synonyms":[{"name":"lacrimal gland mucoepidermoid carcinoma","type":"exact"},{"name":"mucoepidermoid carcinoma of lacrimal gland","type":"exact"},{"name":"mucoepidermoid carcinoma of the lacrimal gland","type":"exact"}],"termid":"MONDO:0003092","xrefs":{"Monarch":{"xref_id":"0003092"}}}


id: PBO:0076607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 26","termid":"PBO:0076607"}


id: PR:O42941
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cyp7 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase cyp7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16H5.05c","synonyms":[{"name":"PPIase cyp7 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cyp7","type":"exact"},{"name":"complexed with cdc5 protein 27 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"cyclophilin 7 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"rotamase cyp7 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42941"}


id: PBO:0116719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POPDC1 antisense RNA 1","termid":"PBO:0116719"}


id: PBO:0052348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 3A pseudogene 1","termid":"PBO:0052348"}


id: MONDO:0014580
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal dominant non-syndromic intellectual disability in which the cause of the disease is a mutation in the DPP6 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"autosomal dominant primary microcephaly","termid":"MONDO:0007988"},{"relation_name":"is_a","term_name":"autosomal dominant non-syndromic intellectual disability","termid":"MONDO:0015802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"intellectual disability, autosomal dominant 33","secondary_identifiers":["DOID:0070063","MEDGEN:899389","OMIM:616311","UMLS:C4225375","GARD:16082"],"synonyms":[{"name":"DPP6 autosomal dominant non-syndromic intellectual disability","type":"exact"},{"name":"MRD33","type":"exact"},{"name":"autosomal dominant intellectual disability 33","type":"exact"},{"name":"autosomal dominant mental retardation 33","type":"exact"},{"name":"autosomal dominant non-syndromic intellectual disability 33","type":"related"},{"name":"autosomal dominant non-syndromic intellectual disability caused by mutation in DPP6","type":"exact"},{"name":"intellectual disability, autosomal dominant 33","type":"exact"},{"name":"intellectual disability, autosomal dominant type 33","type":"exact"},{"name":"mental retardation, autosomal dominant 33","type":"related"},{"name":"mental retardation, autosomal dominant type 33","type":"exact"}],"termid":"MONDO:0014580","xrefs":{"Monarch":{"xref_id":"0014580"}}}


id: GO:0097212
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lysosomal membrane. A lysosomal membrane is the lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.","definition_xrefs":["GOC:yaf","PMID:20544854"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane organization","termid":"GO:0061024"},{"relation_name":"part_of","term_name":"lysosome organization","termid":"GO:0007040"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"lysosomal membrane organization","synonyms":[{"name":"lysosomal membrane organisation","type":"exact"},{"name":"lysosome membrane organization","type":"exact"}],"termid":"GO:0097212"}


id: PBO:0048875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A6 family member A","termid":"PBO:0048875"}


id: PBO:0002712
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.4.11.-","termid":"PBO:0002712"}


id: PBO:0038614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ACD shelterin complex subunit and telomerase recruitment factor","termid":"PBO:0038614"}


id: MONDO:1012790
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cataract that occurs in cattle due to a mutation in the CPAMD8 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cataract, non-human animal","termid":"MONDO:1012962"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cataract, CPAMD8-related, cattle","secondary_identifiers":["OMIA:002111-9913"],"synonyms":[{"name":"Morgagnian cataract","type":"related"},{"name":"cataract, recessive, CPAMD8-related, cattle","type":"exact"}],"termid":"MONDO:1012790","xrefs":{"Monarch":{"xref_id":"1012790"}}}


id: PBO:0064631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisome proliferator activated receptor gamma","termid":"PBO:0064631"}


id: PBO:0061412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuronal pentraxin receptor","termid":"PBO:0061412"}


id: GO:0030790
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + trichlorophenol = S-adenosyl-L-homocysteine + trichloroanisole.","definition_xrefs":["EC:2.1.1.136"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"chlorophenol O-methyltransferase activity","secondary_identifiers":["RHEA:18909","MetaCyc:2.1.1.136-RXN"],"synonyms":[{"name":"S-adenosyl-L-methionine:trichlorophenol O-methyltransferase activity","type":"related"},{"name":"halogenated phenol O-methyltransferase activity","type":"broad"},{"name":"trichlorophenol O-methyltransferase activity","type":"related"}],"termid":"GO:0030790"}


id: PBO:0065057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRELI domain containing 3B pseudogene 11","termid":"PBO:0065057"}


id: PBO:0003802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palmitoyltransferase Erf2 (predicted)","termid":"PBO:0003802"}


id: PBO:0070534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7","termid":"PBO:0070534"}


id: PBO:0080084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 46","termid":"PBO:0080084"}


id: GO:0140932
data:
  {"annotated_genes":["SJAG_01625","SJAG_05010"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70337,93328],"is_not":false,"summary":null,"term":"GO:0140932"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 5'-end (N2,N2,N7-trimethyl 5'-triphosphoguanosine)-ribonucleoside in mRNA + H2O = a 5'-end diphospho-ribonucleoside in mRNA + 2 H+ + N7-methyl-GMP. Can also use (N7-methyl 5'-triphosphoguanosine)-ribonucleoside in mRNA as a substrate.","definition_xrefs":["PMID:24742626","PMID:32723815"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01625":null,"SJAG_05010":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"5'-(N(7)-methyl 5'-triphosphoguanosine)-[mRNA] diphosphatase activity","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["EC:3.6.1.59"],"synonyms":[{"name":"m(7)GpppN m(7)GMP phosphohydrolase activity","type":"exact"},{"name":"m(7)GpppX diphosphatase activity","type":"exact"},{"name":"m(7)GpppX pyrophosphatase activity","type":"exact"}],"termid":"GO:0140932","terms_by_termid":{"GO:0140932":null}}


id: PBO:0031381
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-invasive_growth_abolished_(obsolete_FYPO:0000048)","termid":"PBO:0031381"}


id: PBO:0057034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 128-2","termid":"PBO:0057034"}


id: SO:0001688
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The boundary at which a restriction enzyme breaks the nucleotide sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide_cleavage_site","termid":"SO:0002204"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"restriction_enzyme_cleavage_junction","synonyms":[{"name":"restriction enzyme cleavage junction","type":"exact"}],"termid":"SO:0001688"}


id: MONDO:0013822
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any acrodysostosis in which the cause of the disease is a mutation in the PDE4D gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acrodysostosis","termid":"MONDO:0019797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"acrodysostosis 2 with or without hormone resistance","secondary_identifiers":["GARD:15823","MEDGEN:766164","OMIM:614613","UMLS:C3553250"],"synonyms":[{"name":"ACRDYS2","type":"related"},{"name":"PDE4D acrodysostosis","type":"exact"},{"name":"acrodysostosis 2 with or without hormone resistance","type":"exact"},{"name":"acrodysostosis 2, with or without hormone resistance","type":"exact"},{"name":"acrodysostosis caused by mutation in PDE4D","type":"exact"}],"termid":"MONDO:0013822","xrefs":{"Monarch":{"xref_id":"0013822"}}}


id: FYPO:0006931
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to butylated hydroxytoluene (dibutylhydroxytoluene; BHT). Cells stop growing (and may die) at a concentration of butylated hydroxytoluene that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002683","FYPO:0001985","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to butylated hydroxytoluene","synonyms":[{"name":"hypersensitive to butylated hydroxytoluene","type":"exact"},{"name":"sensitive to 2,6-di-tert-butyl-4-methylphenol","type":"exact"},{"name":"sensitive to BHT","type":"exact"},{"name":"sensitive to butylated hydroxytoluene during mitotic cell cycle","type":"related"},{"name":"sensitive to butylated hydroxytoluene during vegetative growth","type":"exact"},{"name":"sensitive to dibutylhydroxytoluene","type":"exact"}],"termid":"FYPO:0006931"}


id: PBO:0050304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 6","termid":"PBO:0050304"}


id: MONDO:0015740
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Trisomy 18p is an extremely rare chromosomal anomaly with a poorly defined clinical phenotype. Reported manifestations include short stature, mild, moderate or severe developmental delay and intellectual disability, variable but mild facial dysmorphism, and epilepsy.","definition_xrefs":["Orphanet:1715"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial trisomy/tetrasomy of the short arm of chromosome 18","termid":"MONDO:0016951"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trisomy 18p","secondary_identifiers":["icd11.foundation:2079728626","GARD:5323","MESH:C538307","UMLS:C2931811","MEDGEN:419907"],"synonyms":[{"name":"18p duplication","type":"related"},{"name":"18p trisomy","type":"related"},{"name":"Duplication 18p","type":"exact"},{"name":"Duplication of the short arm of chromosome 18","type":"exact"},{"name":"chromosome 18p duplication","type":"related"},{"name":"partial trisomy 18p","type":"related"},{"name":"trisomy of the short arm of chromosome 18","type":"exact"},{"name":"trisomy type 18p","type":"exact"}],"termid":"MONDO:0015740","xrefs":{"Monarch":{"xref_id":"0015740"}}}


id: GO:0015112
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of nitrate ions (NO3-) from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transmembrane transporter activity","termid":"GO:0015103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"nitrate transmembrane transporter activity","synonyms":[{"name":"nitrite/nitrate porter activity","type":"related"}],"termid":"GO:0015112"}


id: GO:0072492
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region between the inner and outer lipid bilayers of the host cell mitochondrial envelope.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell cytoplasm part","termid":"GO:0033655"},{"relation_name":"part_of","term_name":"host cell mitochondrial envelope","termid":"GO:0044190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell mitochondrial intermembrane space","termid":"GO:0072492"}


id: GO:0006328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete AT binding (obsolete GO:0006328)","synonyms":[{"name":"AT binding","type":"exact"}],"termid":"GO:0006328"}


id: PBO:0083801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein required for the DNA integrity checkpoint pathways; interacts physically with Mec1p and contributes to its activation; putative homolog of S. pombe Rad26 and human ATRIP; forms nuclear foci upon DNA replication stress","termid":"PBO:0083801"}


id: GO:0097044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 56 of the histone as a result of the detection of DNA damage within a cell.","definition_xrefs":["PMID:18344406","GOC:pr","GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K56 acetylation in response to DNA damage (obsolete GO:0097044)","termid":"GO:0097044"}


id: PBO:0090139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic cohesin complex, STAG protein subunit Psc3","termid":"PBO:0090139"}


id: PBO:0089627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EF-1 alpha folding chaperone, zinc finger protein Zpr1","termid":"PBO:0089627"}


id: FYPO:0004237
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to heterochromatin at centromere outer repeat regions of a chromosome is decreased.","definition_xrefs":["PMID:20299449","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to heterochromatin during vegetative growth","termid":"FYPO:0001131"},{"relation_name":"is_a","term_name":"increased protein localization to chromatin at centromere outer repeat","termid":"FYPO:0006682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"increased protein localization to heterochromatin at centromere outer repeat","synonyms":[{"name":"increased protein localisation to heterochromatin at centromere otr","type":"exact"},{"name":"increased protein localisation to heterochromatin at centromere outer repeat","type":"exact"},{"name":"increased protein localisation to heterochromatin at centromeric outer repeat region","type":"exact"},{"name":"increased protein localisation to heterochromatin at pericentric region","type":"related"},{"name":"increased protein localisation to heterochromatin at pericentromeric region","type":"related"},{"name":"increased protein localization to heterochromatin at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"increased protein localization to heterochromatin at centromere outer repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0004237"}


id: MONDO:0007145
data:
  {"annotated_genes":["SJAG_03846"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88698],"is_not":false,"summary":null,"term":"MONDO:0007145"}]},"cv_name":"mondo","definition":"Aplasia cutis congenita (ACC) is a rare skin disorder characterized by localized absence of skin that is usually located on the scalp but can occur anywhere on the body including the face, trunk and extremities. ACC may occasionally be associated with other anomalies.","definition_xrefs":["Orphanet:1114"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mixed dermis disorder","termid":"MONDO:0019294"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03846":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"aplasia cutis congenita","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:5835","NORD:794","OMIM:107600","HP:0001057","MEDGEN:79390","SCTID:35484002","DOID:0080661","ICD9:757.39","icd11.foundation:350175828","NCIT:C98822","UMLS:C0282160"],"synonyms":[{"name":"ACC","type":"related"},{"name":"aplasia cutis congenita","type":"exact"},{"name":"aplasia cutis congenita (disease)","type":"exact"},{"name":"aplasia cutis congenita nonsyndromic","type":"related"},{"name":"aplasia cutis congenita recessive","type":"exact"},{"name":"aplasia cutis congenita, nonsyndromic","type":"related"},{"name":"congenital defect of skull and scalp","type":"related"},{"name":"scalp defect congenital","type":"related"},{"name":"scalp defect, congenital","type":"related"}],"termid":"MONDO:0007145","terms_by_termid":{"MONDO:0007145":null},"xrefs":{"Monarch":{"xref_id":"0007145"}}}


id: PBO:0052585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine rich nucleolar protein 1 pseudogene 3","termid":"PBO:0052585"}


id: PR:O94660
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nitrilase homolog 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02781","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolase nit2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC651.02","secondary_identifiers":["UniProtKB:O94660"],"synonyms":[{"name":"Spom972h-NIT1","type":"exact"}],"termid":"PR:O94660"}


id: GO:1904523
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of DNA amplification.","definition_xrefs":["PMID:26195783","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA biosynthetic process","termid":"GO:2000278"},{"relation_name":"regulates","term_name":"DNA amplification","termid":"GO:0006277"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"regulation of DNA amplification","termid":"GO:1904523"}


id: FYPO:0007168
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the attachment of microtubules to the cell cortex does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"},{"relation_name":"is_a","term_name":"abolished molecular function","termid":"FYPO:0005446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"abolished microtubule attachment to cell cortex","synonyms":[{"name":"abolished microtubule anchoring at cell cortex","type":"exact"},{"name":"abolished microtubule cortical anchor activity","type":"exact"}],"termid":"FYPO:0007168"}


id: GO:0000128
data:
  {"annotated_genes":["SJAG_03473","SJAG_01253","SJAG_03802","SJAG_01975","SJAG_04723","SJAG_03484","SJAG_02380","SJAG_00926","SJAG_04191","SJAG_00239","SJAG_00910","SJAG_04720"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71628,78278,78861,80280],"is_not":false,"summary":null,"term":"GO:0000128"},{"annotations":[105349],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036349"},{"annotations":[105350,108059],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0060257"},{"annotations":[110450,115923,113206,117983,107703,110576],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1900735"}]},"cv_name":"biological_process","definition":"The reversible, non-sexual aggregation of single-celled organisms in suspension to form aggregates of many cells known as flocs.","definition_xrefs":["PMID:8740415","GOC:vw","PMID:21114594","GOC:jl","PMID:11472912"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological process involved in intraspecies interaction between organisms","termid":"GO:0051703"},{"relation_name":"is_a","term_name":"adhesion between unicellular organisms","termid":"GO:0098610"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00239":null,"SJAG_00910":null,"SJAG_00926":null,"SJAG_01253":null,"SJAG_01975":null,"SJAG_02380":null,"SJAG_03473":null,"SJAG_03484":null,"SJAG_03802":null,"SJAG_04191":null,"SJAG_04720":null,"SJAG_04723":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"flocculation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Flocculation","GO:0036281","GO:0036282","GO:0043689","GO:0032128","GO:0000501","GO:0043690"],"synonyms":[{"name":"cell-cell adhesion involved in flocculation","type":"exact"},{"name":"cell-cell adhesion involved in flocculation via cell wall protein-carbohydrate interaction","type":"narrow"},{"name":"co-flocculation","type":"narrow"},{"name":"coflocculation","type":"narrow"},{"name":"coflocculation via lectin-mannose interaction","type":"narrow"},{"name":"coflocculation via protein-carbohydrate interaction","type":"narrow"},{"name":"flocculation via cell wall protein-carbohydrate interaction","type":"related"},{"name":"flocculation via extracellular polymer","type":"related"}],"termid":"GO:0000128","terms_by_termid":{"GO:0000128":null,"GO:0036349":null,"GO:0060257":null,"GO:1900735":null}}


id: PBO:0063954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol-5-phosphate 4-kinase type 2 gamma","termid":"PBO:0063954"}


id: PBO:0052623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 2","termid":"PBO:0052623"}


id: GO:1990905
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A small, flexible, finger-like projection of cytoplasm containing an array of microtubles and located near the flagellar pores in some photosynthetic as well as nonphotosynthetic dinoflagellate species. Its functions are not fully understood, but it has been associated with feeding behavior (phagotrophy).","definition_xrefs":["Wikipedia:Dinoflagellate","GOC:at","PMID:1480107"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection","termid":"GO:0120025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"dinoflagellate peduncle","termid":"GO:1990905"}


id: PBO:0111871
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OB fold","termid":"PBO:0111871"}


id: GO:0018748
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: iprodione + OH- = 3,5-dichlorophenylcarboximide + N-isopropylcarbamate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete iprodione amidohydrolase activity (obsolete GO:0018748)","termid":"GO:0018748"}


id: GO:1903205
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of hydrogen peroxide-induced cell death.","definition_xrefs":["GOC:PARL","GOC:TermGenie","GO_REF:0000058","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of hydrogen peroxide-induced cell death (obsolete GO:1903205)","synonyms":[{"name":"protection against hydrogen peroxide-mediated cell death","type":"related"},{"name":"regulation of cell death in response to H2O2","type":"exact"},{"name":"regulation of cell death in response to hydrogen peroxide","type":"exact"},{"name":"regulation of hydrogen peroxide-mediated cell death","type":"related"}],"termid":"GO:1903205"}


id: GO:0007444
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the imaginal disc over time, from its formation to the metamorphosis to form adult structures. Imaginal discs are epithelial infoldings in the larvae of holometabolous insects that develop into adult structures (legs, antennae, wings, etc.).","definition_xrefs":["GOC:bf","ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"imaginal disc development","termid":"GO:0007444"}


id: PBO:0061594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurotensin","termid":"PBO:0061594"}


id: PBO:0059194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAS related GPR family member X1","termid":"PBO:0059194"}


id: SO:0001225
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is silenced by histone modification.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"silenced_by_histone_modification","termid":"SO:0001221"},{"relation_name":"is_a","term_name":"silenced_gene","termid":"SO:0000127"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_silenced_by_histone_modification","synonyms":[{"name":"gene silenced by histone modification","type":"exact"}],"termid":"SO:0001225"}


id: GO:0001714
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell fate determination process that results in a cell becoming capable of differentiating autonomously into an endoderm cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate specification","termid":"GO:0001708"},{"relation_name":"part_of","term_name":"endodermal cell fate commitment","termid":"GO:0001711"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endodermal cell fate specification","synonyms":[{"name":"endoderm cell fate specification","type":"exact"}],"termid":"GO:0001714"}


id: GO:0008764
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glutamate + ATP + UDP-N-acetylmuramoyl-L-alanine = ADP + 2 H+ + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate.","definition_xrefs":["RHEA:16429"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"UDP-N-acetylmuramoylalanine-D-glutamate ligase activity","secondary_identifiers":["EC:6.3.2.9","KEGG_REACTION:R02783","MetaCyc:UDP-NACMURALA-GLU-LIG-RXN"],"synonyms":[{"name":"D-glutamate ligase activity","type":"related"},{"name":"D-glutamate-adding enzyme activity","type":"related"},{"name":"MurD synthetase activity","type":"related"},{"name":"UDP-Mur-NAC-L-Ala:D-Glu ligase activity","type":"related"},{"name":"UDP-N-acetylmuramoyl-L-alanine:glutamate ligase (ADP-forming)","type":"related"},{"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase activity","type":"related"},{"name":"uridine diphospho-N-acetylmuramoylalanyl-D-glutamate synthetase activity","type":"related"}],"termid":"GO:0008764"}


id: GO:0061298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the vasculature of the retina over time, from its formation to the mature structure.","definition_xrefs":["GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vasculature development","termid":"GO:0001944"},{"relation_name":"part_of","term_name":"retina development in camera-type eye","termid":"GO:0060041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retina vasculature development in camera-type eye","synonyms":[{"name":"retinal vasculature development","type":"exact"}],"termid":"GO:0061298"}


id: PBO:0042465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle associated 4 pseudogene 2","termid":"PBO:0042465"}


id: FYPO:0003567
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the insertion of the mitotic spindle pole body localization into the nuclear envelope is abnormal.","definition_xrefs":["PomBase:mah","PMID:19942852","PMID:24963130","GO:0140480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle pole body localization","termid":"FYPO:0000534"},{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle process","termid":"FYPO:0002737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal mitotic spindle pole body insertion into nuclear envelope","secondary_identifiers":["FYPO:0006595"],"synonyms":[{"name":"abnormal establishment of spindle pole body localization to nuclear envelope","type":"exact"},{"name":"abnormal mitotic SPB insertion into nuclear envelope","type":"exact"},{"name":"abnormal mitotic spindle pole body insertion into nuclear envelope during vegetative growth","type":"exact"},{"name":"abnormal mitotic spindle pole body localization to nuclear envelope","type":"related"},{"name":"abnormal spindle pole body insertion into nuclear envelope during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003567"}


id: GO:1905027
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of membrane depolarization during AV node cell action potential.","definition_xrefs":["GOC:BHF_miRNA","GOC:mtg_cardiac_conduct_nov11","GOC:BHF","GOC:TermGenie","GOC:rph","PMID:19726871","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of AV node cell action potential","termid":"GO:0098904"},{"relation_name":"is_a","term_name":"regulation of membrane depolarization during cardiac muscle cell action potential","termid":"GO:1900825"},{"relation_name":"regulates","term_name":"membrane depolarization during AV node cell action potential","termid":"GO:0086045"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of membrane depolarization during AV node cell action potential","synonyms":[{"name":"regulation of membrane depolarization during AV node cardiac muscle cell action potential","type":"exact"},{"name":"regulation of membrane depolarization during atrioventricular node cardiac muscle cell action potential","type":"exact"}],"termid":"GO:1905027"}


id: GO:0036405
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the cell outer membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.","definition_xrefs":["GOC:dos","GOC:md"],"gene_count":0,"genotype_count":0,"name":"obsolete anchored component of cell outer membrane (obsolete GO:0036405)","synonyms":[{"name":"anchored to cell outer membrane","type":"narrow"}],"termid":"GO:0036405"}


id: PBO:0063377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDGFA associated protein 1","termid":"PBO:0063377"}


id: PBO:0000697
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.1.105","termid":"PBO:0000697"}


id: GO:0010294
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (+)-abscisate + UDP-D-glucose = abscisic acid glucose ester + UDP.","definition_xrefs":["DOI:10.1016/j.tetasy.2004.11.062"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"abscisic acid glucosyltransferase activity","secondary_identifiers":["RHEA:31031","MetaCyc:RXN-8155"],"termid":"GO:0010294"}


id: PBO:0076064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm tail PG-rich repeat containing 2","termid":"PBO:0076064"}


id: MONDO:0014347
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Rothmund-Thomson syndrome","termid":"MONDO:0010002"},{"relation_name":"is_a","term_name":"primordial dwarfism and slender bone disorder","termid":"MONDO:0800063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"Rothmund-Thomson syndrome, type 3","secondary_identifiers":["OMIM:615789","UMLS:C4014339","MEDGEN:862776"],"synonyms":[{"name":"short stature with microcephaly and distinctive facies","type":"exact"}],"termid":"MONDO:0014347","xrefs":{"Monarch":{"xref_id":"0014347"}}}


id: PBO:0072920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small Cajal body-specific RNA 1","termid":"PBO:0072920"}


id: GO:1904695
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vascular smooth muscle contraction.","definition_xrefs":["GOC:BHF_miRNA","GOC:BHF","GOC:rph","GO_REF:0000058","PMID:22158624","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vascular associated smooth muscle contraction","termid":"GO:0003056"},{"relation_name":"is_a","term_name":"positive regulation of vasoconstriction","termid":"GO:0045907"},{"relation_name":"is_a","term_name":"positive regulation of smooth muscle contraction","termid":"GO:0045987"},{"relation_name":"positively_regulates","term_name":"vascular associated smooth muscle contraction","termid":"GO:0014829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vascular associated smooth muscle contraction","synonyms":[{"name":"activation of vascular smooth muscle contraction","type":"narrow"},{"name":"positive regulation of vascular smooth muscle contraction","type":"exact"},{"name":"up regulation of vascular smooth muscle contraction","type":"exact"},{"name":"up-regulation of vascular smooth muscle contraction","type":"exact"},{"name":"upregulation of vascular smooth muscle contraction","type":"exact"}],"termid":"GO:1904695"}


id: PBO:0028546
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_RNA_level_during_cellular_response_to_osmotic_stress","termid":"PBO:0028546"}


id: PBO:0057350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 544b","termid":"PBO:0057350"}


id: FYPO:0003351
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which one or more proteins is localized to the kinetochore of a chromosome for a longer time than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to kinetochore during vegetative growth","termid":"FYPO:0001268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"increased duration of protein localization to kinetochore during vegetative growth","synonyms":[{"name":"increased duration of protein localisation to kinetochore during vegetative growth","type":"exact"},{"name":"increased duration of protein localization to kinetochore during mitotic cell cycle","type":"related"},{"name":"prolonged protein localization to kinetochore during vegetative growth","type":"exact"}],"termid":"FYPO:0003351"}


id: PBO:0046399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EPB41L4A antisense RNA 1","termid":"PBO:0046399"}


id: PBO:0071659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL37A divergent transcript","termid":"PBO:0071659"}


id: PBO:0063749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHB1 pseudogene 14","termid":"PBO:0063749"}


id: PBO:0091294
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Has Fused Lysosomes","termid":"PBO:0091294"}


id: PBO:0070340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 13","termid":"PBO:0070340"}


id: PBO:0086778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; SWAT-GFP and mCherry fusion proteins localize to the endoplasmic reticulum; YDL241W is not an essential gene","termid":"PBO:0086778"}


id: PBO:0039262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldehyde dehydrogenase 7 family member A1 pseudogene 4","termid":"PBO:0039262"}


id: PBO:0040633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BarH like homeobox 2","termid":"PBO:0040633"}


id: PBO:0113461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the CoA-Synthesizing Protein Complex (CoA-SPC); subunits of this complex are: Cab2p, Cab3p, Cab4p, Cab5p, Sis2p and Vhs3p; probable dephospho-CoA kinase (DPCK) that catalyzes the last step in coenzyme A biosynthesis; involved in histone acylation; null mutant lethality is complemented by human homologs DCAKD and COASY and by E. coli coaE (encoding DPCK); extrinsic component of the mitochondrial outer membrane that also localizes to lipid droplets","termid":"PBO:0113461"}


id: PBO:0053780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1030","termid":"PBO:0053780"}


id: GO:0033636
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism modulates a change in state or activity of a host cell or organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by symbiont of host response to temperature stimulus (obsolete GO:0033636)","synonyms":[{"name":"modulation by symbiont of host response to thermal stimulus","type":"exact"}],"termid":"GO:0033636"}


id: GO:0032774
data:
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id: PBO:0071028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 30","termid":"PBO:0071028"}


id: GO:0072761
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a capsazepine stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to capsazepine","termid":"GO:1901594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to capsazepine","termid":"GO:0072761"}


id: PR:P50523
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cytochrome b-c1 complex subunit 8 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR12119:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b-c1 complex subunit 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1782.07","secondary_identifiers":["UniProtKB:P50523"],"synonyms":[{"name":"SPAC1782.07","type":"related"},{"name":"Spom972h-UQCRQ","type":"exact"},{"name":"complex III subunit 8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquinol-cytochrome c reductase complex 11 kDa protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P50523"}


id: GO:0043243
data:
  {"annotated_genes":["SJAG_05265","SJAG_03126","SJAG_02433","SJAG_02189","SJAG_02812","SJAG_04312"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99406],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901098"},{"annotations":[103646],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031117"},{"annotations":[113796],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904595"},{"annotations":[78222,67770,70235],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045905"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein complex disassembly, the disaggregation of a protein complex into its constituent components.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex disassembly","termid":"GO:0043244"},{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"positively_regulates","term_name":"protein-containing complex disassembly","termid":"GO:0032984"}],"gene_count":6,"genes_by_uniquename":{"SJAG_02189":null,"SJAG_02433":null,"SJAG_02812":null,"SJAG_03126":null,"SJAG_04312":null,"SJAG_05265":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein-containing complex disassembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"synonyms":[{"name":"activation of protein complex disassembly","type":"narrow"},{"name":"positive regulation of protein complex disassembly","type":"related"},{"name":"stimulation of protein complex disassembly","type":"narrow"},{"name":"up regulation of protein complex disassembly","type":"exact"},{"name":"up-regulation of protein complex disassembly","type":"exact"},{"name":"upregulation of protein complex disassembly","type":"exact"}],"termid":"GO:0043243","terms_by_termid":{"GO:0031117":null,"GO:0045905":null,"GO:1901098":null,"GO:1904595":null}}


id: PBO:0049321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycosyltransferase like domain containing 1","termid":"PBO:0049321"}


id: PR:O74965
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A eukaryotic translation initiation factor 2A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03697","PRO:DNx","PANTHER:PTHR13227:SF5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 2A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4B4.04","secondary_identifiers":["UniProtKB:O74965"],"synonyms":[{"name":"Spom972h-EIF2A","type":"exact"},{"name":"eIF-2A (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74965"}


id: PBO:0051563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 12B","termid":"PBO:0051563"}


id: PR:P36596
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A squalene synthase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11626:SF0","PRO:DNx","OMA:SCHPO02641"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"squalene synthase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC646.05c","secondary_identifiers":["UniProtKB:P36596"],"synonyms":[{"name":"FPP:FPP farnesyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SQS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-FDFT1","type":"exact"},{"name":"farnesyl-diphosphate farnesyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P36596"}


id: PBO:0043166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"class II major histocompatibility complex transactivator","termid":"PBO:0043166"}


id: PBO:0031494
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_filament_organization_during_vegetative_growth","termid":"PBO:0031494"}


id: SO:0002007
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An MNV is a multiple nucleotide variant (substitution) in which the inserted sequence is the same length as the replaced sequence.","definition_xrefs":["NCBI:th"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substitution","termid":"SO:1000002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MNV","synonyms":[{"name":"multiple nucleotide substitution","type":"exact"},{"name":"multiple nucleotide variant","type":"exact"}],"termid":"SO:0002007"}


id: MONDO:1012620
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inherited disorder of neuromuscular transmission resulting in muscle weakness and fatigability exacerbated by exercise that occurs in dogs due to a mutation in the CHRNE gene.","definition_xrefs":["PMID:38853290"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"myasthenia, dog","termid":"MONDO:1012175"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital myasthenic syndrome, CHRNE-related, dog","secondary_identifiers":["OMIA:000685-9615"],"termid":"MONDO:1012620","xrefs":{"Monarch":{"xref_id":"1012620"}}}


id: GO:0051513
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of monopolar cell growth, polarized growth from one end of a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of unidimensional cell growth","termid":"GO:0051510"},{"relation_name":"regulates","term_name":"monopolar cell growth","termid":"GO:0042814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of monopolar cell growth","termid":"GO:0051513"}


id: PATO:0001607
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A tangled quality inhering in a bearer by virtue of the bearer's being not possible to unravel.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tangled","termid":"PATO:0001846"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"matted","termid":"PATO:0001607"}


id: MONDO:0015603
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare odontal or periodontal disorder (obsolete MONDO:0015603)","secondary_identifiers":["Orphanet:164001"],"termid":"MONDO:0015603","xrefs":{"Monarch":{"xref_id":"0015603"}}}


id: GO:0034036
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a purine ribonucleoside bisphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar.","definition_xrefs":["GOC:pde","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoside bisphosphate biosynthetic process","termid":"GO:0034030"},{"relation_name":"is_a","term_name":"purine nucleoside bisphosphate biosynthetic process","termid":"GO:0034033"},{"relation_name":"is_a","term_name":"purine ribonucleoside bisphosphate metabolic process","termid":"GO:0034035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"purine ribonucleoside bisphosphate biosynthetic process","synonyms":[{"name":"purine ribonucleoside bisphosphate anabolism","type":"exact"},{"name":"purine ribonucleoside bisphosphate biosynthesis","type":"exact"},{"name":"purine ribonucleoside bisphosphate formation","type":"exact"},{"name":"purine ribonucleoside bisphosphate synthesis","type":"exact"}],"termid":"GO:0034036"}


id: GO:0019883
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses antigen (peptide or lipid) of endogenous origin on its cell surface in association with an MHC protein complex.","definition_xrefs":["ISBN:0781735149","PMID:15771591","PMID:15928678","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation","termid":"GO:0019882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of endogenous antigen","synonyms":[{"name":"antigen presentation, endogenous antigen","type":"exact"}],"termid":"GO:0019883"}


id: FYPO:0007691
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the activity of a DNA strand exchange activator is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:33493431"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal molecular function","termid":"FYPO:0000706"},{"relation_name":"is_a","term_name":"catalytic activity regulator phenotype","termid":"FYPO:0007690"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000652"],"is_obsolete":false,"name":"normal DNA strand exchange activator activity","synonyms":[{"name":"normal RecA-family recombinase activator activity","type":"exact"},{"name":"normal positive regulation of RecA-family recombinase activity","type":"related"}],"termid":"FYPO:0007691"}


id: FYPO:0001199
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of calcium ion measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in cell during vegetative growth","termid":"FYPO:0001316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal cellular calcium level","synonyms":[{"name":"normal cellular calcium accumulation","type":"related"},{"name":"normal cellular calcium ion level","type":"exact"},{"name":"normal cellular calcium level during mitotic cell cycle","type":"related"},{"name":"normal cellular calcium level during vegetative growth","type":"exact"}],"termid":"FYPO:0001199"}


id: PBO:0029138
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_methionine","termid":"PBO:0029138"}


id: MONDO:0007159
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Arthrogryposis-like hand anomaly-sensorineural deafness syndrome is characterized by an arthrogryposis-like hand anomaly and sensorineural deafness. It has been described in only one family. Male-to-male transmission was observed.","definition_xrefs":["Orphanet:1144"],"direct_ancestors":[{"relation_name":"is_a","term_name":"distal arthrogryposis","termid":"MONDO:0019942"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arthrogryposis-like hand anomaly-sensorineural deafness syndrome","secondary_identifiers":["OMIM:108200","MESH:C535386","GARD:784","MEDGEN:350677","DOID:0111609","SCTID:720515009","UMLS:C1862471"],"synonyms":[{"name":"DA6","type":"related"},{"name":"arthrogryposis and sensorineural deafness","type":"related"},{"name":"arthrogryposis, distal, type 6","type":"related"},{"name":"arthrogryposis-like hand anomaly and sensorineural deafness","type":"related"},{"name":"distal arthrogryposis type 6","type":"exact"},{"name":"familial hand abnormality and sensori-neural deafness","type":"related"}],"termid":"MONDO:0007159","xrefs":{"Monarch":{"xref_id":"0007159"}}}


id: PBO:0056249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAK16 homolog","termid":"PBO:0056249"}


id: GO:0019574
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of sucrose, which proceeds via the conversion of sucrose to 3'-ketosucrose. 3'-ketosucrose is hydrolyzed to 3-ketoglucose and fructose, and the 3-ketoglucose is then be converted to glucose.","definition_xrefs":["GOC:dgf","GOC:bf","MetaCyc:SUCROSEUTIL2-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sucrose catabolic process","termid":"GO:0005987"},{"relation_name":"is_a","term_name":"glucose metabolic process","termid":"GO:0006006"},{"relation_name":"is_a","term_name":"phosphate-containing compound metabolic process","termid":"GO:0006796"},{"relation_name":"is_a","term_name":"organophosphate metabolic process","termid":"GO:0019637"},{"relation_name":"is_a","term_name":"carbohydrate derivative metabolic process","termid":"GO:1901135"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"sucrose catabolic process via 3'-ketosucrose","synonyms":[{"name":"sucrose breakdown, using glucoside 3-dehydrogenase","type":"exact"},{"name":"sucrose catabolic process to D-glucose","type":"exact"},{"name":"sucrose catabolic process, using glucoside 3-dehydrogenase","type":"exact"},{"name":"sucrose catabolism, using glucoside 3-dehydrogenase","type":"exact"},{"name":"sucrose degradation, using glucoside 3-dehydrogenase","type":"exact"}],"termid":"GO:0019574"}


id: GO:0110109
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of imaginal disc-derived wing vein specification.","definition_xrefs":["PMID:11861482","GOC:ha"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of imaginal disc-derived wing vein specification","termid":"GO:0110107"},{"relation_name":"negatively_regulates","term_name":"imaginal disc-derived wing vein specification","termid":"GO:0007474"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of imaginal disc-derived wing vein specification","termid":"GO:0110109"}


id: PBO:0003477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translation termination factor Rrf1","termid":"PBO:0003477"}


id: MONDO:0045039
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"basidiobolomycosis","termid":"MONDO:0000302"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"systemic basidiobolomycosis","secondary_identifiers":["MEDGEN:575968","SCTID:240787008","UMLS:C0343967"],"synonyms":[{"name":"disseminated basidiobolomycosis","type":"exact"}],"termid":"MONDO:0045039","xrefs":{"Monarch":{"xref_id":"0045039"}}}


id: PBO:0060216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MVP divergent transcript","termid":"PBO:0060216"}


id: MONDO:0010153
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Trichoodontoonychial dysplasia is a rare ectodermal dysplasia syndrome characterized by severe generalized hypotrichosis, parietal alopecia, secondary anodontia resulting from enamel hypoplasia, onychodystrophy, bone deficiency in the frontoparietal region and skin manifestations (incl. nevus pigmentosus, papules, ephelides, palmoplantar keratosis, supernumerary nipples, abnormal dermatoglyphics). There have been no further descriptions in the literature since 1983.","definition_xrefs":["Orphanet:3355"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"trichoodontoonychial dysplasia","secondary_identifiers":["MEDGEN:481087","MESH:C564760","SCTID:766813000","GARD:5267","OMIM:275450","UMLS:C3279457"],"synonyms":[{"name":"trichoodontoonychial dysplasia with bone deficiency","type":"related"},{"name":"trichoodontoonychial dysplasia with bone deficiency in frontoparietal region","type":"exact"}],"termid":"MONDO:0010153","xrefs":{"Monarch":{"xref_id":"0010153"}}}


id: PBO:0052262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KDM2B divergent transcript","termid":"PBO:0052262"}


id: PATO:0000968
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000968 albino value (obsolete PATO:0000968)","termid":"PATO:0000968"}


id: PBO:0057018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 106a","termid":"PBO:0057018"}


id: MONDO:0022787
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cleft palate heart disease polydactyly absent tibia","termid":"MONDO:0022787","xrefs":{"Monarch":{"xref_id":"0022787"}}}


id: PBO:0065231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 12","termid":"PBO:0065231"}


id: GO:1900016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cytokine production involved in inflammatory response.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of cytokine production involved in inflammatory response","termid":"GO:1900015"},{"relation_name":"negatively_regulates","term_name":"cytokine production involved in inflammatory response","termid":"GO:0002534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of cytokine production involved in inflammatory response","synonyms":[{"name":"down regulation of cytokine production involved in acute inflammatory response","type":"broad"},{"name":"down regulation of cytokine production involved in inflammatory response","type":"related"},{"name":"negative regulation of cytokine production involved in acute inflammatory response","type":"narrow"}],"termid":"GO:1900016"}


id: PBO:0091801
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase delta synthesizes both leading and lagging strands after homologous recombination-dependent replication fork restart","termid":"PBO:0091801"}


id: MONDO:0009138
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Dysosteosclerosis is a skeletal dysplasia characterized by progressive osteosclerosis and platyspondyly.","definition_xrefs":["Orphanet:1782"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteopetrosis","termid":"MONDO:0017198"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dysosteosclerosis","secondary_identifiers":["MESH:C562973","icd11.foundation:1853176074","GARD:2012","ICD9:756.9","OMIM:224300","SCTID:254123002","UMLS:C0432262","MEDGEN:98150","NANDO:2201365"],"synonyms":[{"name":"dysosteosclerosis","type":"exact"}],"termid":"MONDO:0009138","xrefs":{"Monarch":{"xref_id":"0009138"}}}


id: MONDO:0021114
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant neoplasm that affects the Bartholin gland. Representative examples include adenoma, adenomyoma, adenocarcinoma, and squamous cell carcinoma.","definition_xrefs":["NCIT:C6434"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integumentary system disorder","termid":"MONDO:0002051"},{"relation_name":"is_a","term_name":"vulvar neoplasm","termid":"MONDO:0021049"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bartholin gland neoplasm","secondary_identifiers":["MEDGEN:65074","UMLS:C0220616"],"synonyms":[{"name":"Bartholin gland neoplasm","type":"exact"},{"name":"Bartholin's gland neoplasm","type":"exact"},{"name":"Bartholin's gland tumor","type":"exact"},{"name":"Bartholin's gland tumour","type":"exact"},{"name":"major vestibular gland neoplasm","type":"exact"},{"name":"major vestibular gland neoplasm (disease)","type":"exact"},{"name":"major vestibular gland tumor","type":"exact"},{"name":"major vestibular gland tumour","type":"exact"},{"name":"neoplasm of Bartholin's gland","type":"exact"},{"name":"neoplasm of major vestibular gland","type":"exact"},{"name":"neoplasm of the Bartholin's gland","type":"exact"},{"name":"tumor of Bartholin's gland","type":"exact"},{"name":"tumor of major vestibular gland","type":"exact"},{"name":"tumor of the Bartholin's gland","type":"exact"},{"name":"tumour of Bartholin's gland","type":"exact"},{"name":"tumour of major vestibular gland","type":"exact"},{"name":"tumour of the Bartholin's gland","type":"exact"}],"termid":"MONDO:0021114","xrefs":{"Monarch":{"xref_id":"0021114"}}}


id: MONDO:1012468
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"pentalogy of Fallot, non-human animal","termid":"MONDO:1011650"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pentalogy of Fallot, Amur tiger","secondary_identifiers":["OMIA:001857-74533"],"termid":"MONDO:1012468","xrefs":{"Monarch":{"xref_id":"1012468"}}}


id: MONDO:0009942
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pyknoachondrogenesis is a lethal skeletal osteochondrodysplasia characterized by severe generalized osteosclerosis.","definition_xrefs":["Orphanet:3003"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteochondrodysplasia","termid":"MONDO:0005516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"pyknoachondrogenesis","secondary_identifiers":["icd11.foundation:588435239","GARD:4610","MEDGEN:337844","MESH:C536251","OMIM:265880","SCTID:719258003","UMLS:C1849523"],"synonyms":[{"name":"association of skeletal defects resembling achondrogenesis with generalised bone sclerosis","type":"related"},{"name":"association of skeletal defects resembling achondrogenesis with generalized bone sclerosis","type":"related"},{"name":"camera syndrome","type":"exact"},{"name":"pyknoachondrogenesis","type":"exact"}],"termid":"MONDO:0009942","xrefs":{"Monarch":{"xref_id":"0009942"}}}


id: PBO:0088368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein","termid":"PBO:0088368"}


id: PBO:0077726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trinucleotide repeat containing adaptor 6C","termid":"PBO:0077726"}


id: PBO:0083236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; deletion mutation phenotype is likely due to the overlapping verified ORF SKI8/YGL213C","termid":"PBO:0083236"}


id: GO:0042637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regression phase of the hair cycle during which cell proliferation ceases, the hair follicle shortens, and an anchored club hair is produced.","definition_xrefs":["PMID:12535193"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hair cycle phase","termid":"GO:0044851"},{"relation_name":"part_of","term_name":"hair follicle maturation","termid":"GO:0048820"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"catagen","synonyms":[{"name":"hair regression","type":"narrow"}],"termid":"GO:0042637"}


id: PBO:0111760
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin family","termid":"PBO:0111760"}


id: GO:0018104
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of covalently linking peptidoglycan (murein) to proteins.","definition_xrefs":["GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidoglycan biosynthetic process","termid":"GO:0009252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0071554"],"is_obsolete":false,"name":"peptidoglycan-protein cross-linking","termid":"GO:0018104"}


id: GO:0097219
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A sieve plate that contains several specialized sieve areas in either a scalariform or reticulate arrangement.","definition_xrefs":["POC:curators","ISBN:0471738433"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sieve plate","termid":"GO:0097218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005618"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005618","GO:0005575"],"is_obsolete":false,"name":"compound sieve plate","termid":"GO:0097219"}


id: PBO:0053311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lin-54 DREAM MuvB core complex component","termid":"PBO:0053311"}


id: PATO:0001926
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A fluorescence which is higher than normal.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"fluorescent","termid":"PATO:0001290"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased fluorescence","synonyms":[{"name":"high fluorescence","type":"exact"}],"termid":"PATO:0001926"}


id: SO:1000111
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A mutation that changes the amino acid sequence of the peptide in such a way that it changes the 3D structure of the molecule.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000111 sequence_variant_affecting_3D_structure_of_polypeptide (obsolete SO:1000111)","synonyms":[{"name":"mutation affecting 3D structure of polypeptide","type":"related"},{"name":"mutation causing partially characterised 3D structural change","type":"related"},{"name":"mutation causing uncharacterised 3D structural change","type":"related"},{"name":"sequence variant affecting 3D structure of polypeptide","type":"exact"},{"name":"sequence variant affecting 3D-structure of polypeptide","type":"exact"},{"name":"sequence variant causing partially characterised 3D structural change","type":"exact"},{"name":"sequence variant causing uncharacterised 3D structural change","type":"exact"},{"name":"sequence_variant_causing_partially_characterised_3D_structural_change","type":"exact"},{"name":"sequence_variant_causing_uncharacterised_3D_structural_change","type":"exact"}],"termid":"SO:1000111"}


id: GO:1900462
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of pseudohyphal growth by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["PMID:12024012","GOC:dgf","PMID:9811878","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of pseudohyphal growth by negative regulation of transcription from RNA polymerase II promoter (obsolete GO:1900462)","termid":"GO:1900462"}


id: PBO:0063410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDCL3 pseudogene 6","termid":"PBO:0063410"}


id: GO:0080127
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the fruit septum over time, from its formation to the mature structure. The fruit septum is a thin partition or membrane that divides a cavity or a mass of tissue in the fruit.","definition_xrefs":["GOC:dhl","PO:0005008"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"post-embryonic development","termid":"GO:0009791"},{"relation_name":"is_a","term_name":"plant septum development","termid":"GO:1905328"},{"relation_name":"part_of","term_name":"fruit development","termid":"GO:0010154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fruit septum development","termid":"GO:0080127"}


id: PBO:0052472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kruppel like factor 17 pseudogene 1","termid":"PBO:0052472"}


id: SO:0002175
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An insertion that is the result of base-calling or assembly error.","direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_alteration_artifact","termid":"SO:0002172"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insertion_artifact","synonyms":[{"name":"insertion artifact","type":"exact"}],"termid":"SO:0002175"}


id: GO:0044155
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A small pit, depression, or invagination, such as any of the minute pits or incuppings of the host cell membrane formed during pinocytosis, that communicates with the outside of a host cell and extends inward, indenting the host cytoplasm and the host cell membrane. Such caveolae may be pinched off to form free vesicles within the host cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"},{"relation_name":"part_of","term_name":"host cell membrane","termid":"GO:0033644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host caveola","termid":"GO:0044155"}


id: MOD:01415
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-isoleucine residue to a monohydroxylated isoleucine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monohydroxylated residue","termid":"MOD:00425"},{"relation_name":"is_a","term_name":"hydroxylated isoleucine","termid":"MOD:01414"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monohydroxylated isoleucine","synonyms":[{"name":"Hy1Ile","type":"exact"}],"termid":"MOD:01415"}


id: SO:0001767
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"When a variant from the genomic sequence is commonly found in the general population.","direct_ancestors":[{"relation_name":"is_a","term_name":"variant_frequency","termid":"SO:0001763"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"common_variant","synonyms":[{"name":"common variant","type":"exact"}],"termid":"SO:0001767"}


id: SO:0000229
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding tyrosyl tRNA (SO:000272).","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA_primary_transcript","termid":"SO:0000210"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine_tRNA_primary_transcript","synonyms":[{"name":"tyrosine tRNA primary transcript","type":"exact"}],"termid":"SO:0000229"}


id: PBO:0086376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative ATPase containing the DEAD/H helicase-related sequence motif; null mutant displays increased levels of spontaneous Rad52p foci; SWAT-GFP and mCherry fusion proteins localize to the nucleus","termid":"PBO:0086376"}


id: GO:0030955
data:
  {"annotated_genes":["SJAG_02796"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70354],"is_not":false,"summary":null,"term":"GO:0030955"}]},"cv_name":"molecular_function","definition":"Binding to a potassium ion (K+).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkali metal ion binding","termid":"GO:0031420"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02796":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0046872"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0046872","GO:0003674"],"is_obsolete":false,"name":"potassium ion binding","references_by_uniquename":{"GO_REF:0000002":null},"synonyms":[{"name":"K ion binding","type":"exact"}],"termid":"GO:0030955","terms_by_termid":{"GO:0030955":null}}


id: PBO:0071943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S4X pseudogene 20","termid":"PBO:0071943"}


id: PBO:0116703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily I member 1 (gene/pseudogene)","termid":"PBO:0116703"}


id: FYPO:0000164
data:
  {"alleles_by_uniquename":{"SJAG_02252:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02252","name":"ace2delta","uniquename":"SJAG_02252:allele-1"},"SJAG_03143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03143","name":"sep1delta","uniquename":"SJAG_03143:allele-1"},"SJAG_03444:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03444","name":"agn1delta","uniquename":"SJAG_03444:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121001],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001971"},{"annotations":[121466,121467],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006557"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cell separation after cytokinesis is abnormal. Cell separation is the process of physically separating progeny cells after cytokinesis is complete, and involves enzymatic digestion of septum components.","definition_xrefs":["PomBase:mah","GO:0000920"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell division during vegetative growth","termid":"FYPO:0000186"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02252":null,"SJAG_03143":null,"SJAG_03444":null},"genotype_count":3,"genotypes_by_uniquename":{"ace2delta":{"display_name":"ace2delta","display_uniquename":"ace2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02252:allele-1","expression":"Null"}]}]},"agn1delta":{"display_name":"agn1delta","display_uniquename":"agn1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03444:allele-1","expression":"Null"}]}]},"sep1delta":{"display_name":"sep1delta","display_uniquename":"sep1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03143:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal cell separation after cytokinesis","references_by_uniquename":{"PMID:22300943":null,"PMID:24699070":null},"single_locus_annotated_genes":["SJAG_02252","SJAG_03444","SJAG_03143"],"single_locus_genotype_uniquenames":["sep1delta","agn1delta","ace2delta"],"synonyms":[{"name":"abnormal cell separation after cytokinesis during mitotic cell cycle","type":"related"},{"name":"abnormal cell separation after cytokinesis during vegetative growth","type":"exact"},{"name":"abnormal mitotic cytokinetic cell separation","type":"exact"},{"name":"abnormal septum digestion after cytokinesis","type":"exact"}],"termid":"FYPO:0000164","terms_by_termid":{"FYECO:0000137":null,"FYPO:0001971":null,"FYPO:0006557":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: MONDO:0021275
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A papilloma that involves the eyelid.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin papilloma","termid":"MONDO:0002536"},{"relation_name":"is_a","term_name":"benign eyelid neoplasm","termid":"MONDO:0021605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005093"],"is_obsolete":false,"name":"papilloma of eyelid","secondary_identifiers":["UMLS:C1142491","MEDGEN:256159","NCIT:C4061","SCTID:314515006","icd11.foundation:643260480"],"synonyms":[{"name":"eyelid papilloma","type":"exact"},{"name":"papilloma of the eyelid","type":"exact"}],"termid":"MONDO:0021275","xrefs":{"Monarch":{"xref_id":"0021275"}}}


id: PBO:0052584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine rich nucleolar protein 1 pseudogene 2","termid":"PBO:0052584"}


id: PBO:0083376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps 3' end of verified ORF SCW10/YMR305C","termid":"PBO:0083376"}


id: MONDO:1012902
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by bulbous swellings of the hair shafts and hypotrichosis that occurs in cats due to a mutation in the DSG4 gene.","definition_xrefs":["PMID:34878611"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"integumentary system disorder, non-human animal","termid":"MONDO:1011328"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hair shaft dysplasia, DSG4-related, domestic cat","secondary_identifiers":["OMIA:002452-9685"],"synonyms":[{"name":"hair shaft dystrophy, cat","type":"related"}],"termid":"MONDO:1012902","xrefs":{"Monarch":{"xref_id":"1012902"}}}


id: GO:0008350
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete kinetochore motor activity (obsolete GO:0008350)","synonyms":[{"name":"kinetochore motor activity","type":"exact"}],"termid":"GO:0008350"}


id: GO:0034596
data:
  {"annotated_genes":["SJAG_00880","SJAG_02706"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75534,79870],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043812"}]},"cv_name":"molecular_function","definition":"Catalysis of the removal of the 4-phosphate group of a phosphatidylinositol phosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol phosphate phosphatase activity","termid":"GO:0052866"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00880":null,"SJAG_02706":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0016788","GO:0003824"],"is_obsolete":false,"name":"phosphatidylinositol phosphate 4-phosphatase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-1676124","Reactome:R-HSA-1675988","Reactome:R-HSA-8849969","Reactome:R-HSA-1676133"],"synonyms":[{"name":"PI(4)P-phosphatase activity","type":"exact"},{"name":"PI4P-phosphatase activity","type":"exact"},{"name":"PtdIns4P-phosphatase activity","type":"exact"},{"name":"inositol 4-phosphatase","type":"narrow"},{"name":"phosphoinositide 4-phosphatase activity","type":"exact"}],"termid":"GO:0034596","terms_by_termid":{"GO:0043812":null}}


id: GO:0140275
data:
  {"annotated_genes":["SJAG_04237"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[119634],"is_not":false,"summary":null,"term":"GO:0140275"}]},"cv_name":"cellular_component","definition":"A mitochondrial intermembrane space bridging complex consisting of components of the MICOS complex in the inner mitochondrial membrane, the SAM complex in the outer membrane, a conserved DNAJ protein (human DNAJC11) and Metaxin 1.","definition_xrefs":["PMID:26477565"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inner mitochondrial membrane protein complex","termid":"GO:0098800"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04237":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005739","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"MIB complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrial intermembrane space bridging complex","type":"exact"},{"name":"mitofilin complex","type":"exact"}],"termid":"GO:0140275","terms_by_termid":{"GO:0140275":null}}


id: FYPO:0004593
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype that shows detectable differences from normal at the level of an individual cell, when the cell is in the vegetative growth phase of the cell cycle, and after it has undergone a normal mitotic nuclear division and passed through the subsequent mitotic interphase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vegetative cell phenotype","termid":"FYPO:0003755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal vegetative cell phenotype following normal mitosis","synonyms":[{"name":"abnormal cell phenotype following normal mitosis during vegetative growth","type":"exact"},{"name":"abnormal vegetative cell phenotype following normal mitosis and interphase","type":"exact"},{"name":"abnormal vegetative cell phenotype following normal mitosis and passage through mitotic G1 phase","type":"exact"},{"name":"abnormal vegetative cell phenotype following normal mitotic nuclear division","type":"exact"},{"name":"abnormal vegetative cell phenotype following normal nuclear division during mitotic cell cycle","type":"exact"}],"termid":"FYPO:0004593"}


id: MONDO:0958012
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neurodegeneration with brain iron accumulation","termid":"MONDO:0018307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002039","MONDO:0005559"],"is_obsolete":false,"name":"neurodegeneration with brain iron accumulation 9","secondary_identifiers":["OMIM:620669","MEDGEN:1845761","UMLS:C5882740"],"termid":"MONDO:0958012","xrefs":{"Monarch":{"xref_id":"0958012"}}}


id: PR:P36630
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A G2/mitotic-specific cyclin-B2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01138"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G2/mitotic-specific cyclin cig2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB2B4.03","secondary_identifiers":["UniProtKB:P36630"],"synonyms":[{"name":"Spom972h-CCNB2","type":"exact"}],"termid":"PR:P36630"}


id: PBO:0087124
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA 5'-triphosphatase involved in mRNA 5' capping; subunit of mRNA capping enzyme, which is a heterotetramer composed of a Cet1p homodimer and two molecules of guanylyltransferase Ceg1p; Cet1p also has a role in regulation of RNAPII pausing at promoter-proximal sites; interaction between Cet1p and Ceg1p is required for Ceg1p nuclear import; mammalian enzyme is single bifunctional polypeptide; human homolog RNGTT can complement yeast cet1 null mutant","termid":"PBO:0087124"}


id: GO:0031760
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an Edg-7 lysophosphatidic acid receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endothelial differentiation G protein-coupled receptor binding","termid":"GO:0031753"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"Edg-7 lysophosphatidic acid receptor binding","synonyms":[{"name":"Edg-7 lysophosphatidic acid receptor ligand","type":"narrow"},{"name":"LPA3 receptor binding","type":"exact"}],"termid":"GO:0031760"}


id: MONDO:0007463
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"distal osteosclerosis","secondary_identifiers":["MEDGEN:338863","MESH:C565093","OMIM:126250","UMLS:C1852063"],"synonyms":[{"name":"distal osteosclerosis","type":"exact"},{"name":"osteosclerosis, distal","type":"related"}],"termid":"MONDO:0007463","xrefs":{"Monarch":{"xref_id":"0007463"}}}


id: PBO:0084541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the p24 family involved in ER to Golgi transport; similar to Emp24p and Erv25p; role in misfolded protein quality control; forms a heterotrimeric complex with Erp1p, Emp24p, and Erv25p; localized to COPII-coated vesicles; ERP2 has a paralog, ERP4, that arose from the whole genome duplication","termid":"PBO:0084541"}


id: PBO:0028344
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_microtubule_cytoskeleton_during_vegetative_growth","termid":"PBO:0028344"}


id: GO:0035499
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of the dipeptide beta-alanyl-L-histidine (carnosine).","definition_xrefs":["PMID:20097752"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid biosynthetic process","termid":"GO:0008652"},{"relation_name":"is_a","term_name":"carnosine metabolic process","termid":"GO:0035498"},{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"},{"relation_name":"is_a","term_name":"carboxylic acid biosynthetic process","termid":"GO:0046394"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"carnosine biosynthetic process","synonyms":[{"name":"carnosine anabolism","type":"exact"},{"name":"carnosine biosynthesis","type":"exact"},{"name":"carnosine formation","type":"exact"},{"name":"carnosine synthesis","type":"exact"}],"termid":"GO:0035499"}


id: MONDO:1010796
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Darier disease that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Darier disease, non-human animal","termid":"MONDO:1010153"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Darier disease, dog","secondary_identifiers":["OMIA:002265-9615"],"termid":"MONDO:1010796","xrefs":{"Monarch":{"xref_id":"1010796"}}}


id: MONDO:0032855
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with dysmorphic facies and distal skeletal anomalies","secondary_identifiers":["UMLS:C5231448","MEDGEN:1684792","OMIM:618659","GARD:18521"],"synonyms":[{"name":"NEDDFSA","type":"related"},{"name":"NEURODEVELOPMENTAL DISORDER WITH DYSMORPHIC FACIES AND DISTAL SKELETAL ANOMALIES","type":"related"}],"termid":"MONDO:0032855","xrefs":{"Monarch":{"xref_id":"0032855"}}}


id: FYPO:0002448
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which Dsc E3 ubiquitin ligase complex assembly is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein complex assembly during vegetative growth","termid":"FYPO:0001215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal Dsc complex assembly","synonyms":[{"name":"normal Dsc E3 ubiquitin ligase assembly","type":"exact"},{"name":"normal Dsc complex assembly during mitotic cell cycle","type":"related"},{"name":"normal Dsc complex assembly during vegetative growth","type":"exact"}],"termid":"FYPO:0002448"}


id: PBO:0069664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 941, pseudogene","termid":"PBO:0069664"}


id: PBO:0088306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA/mRNA dihydrouridine synthase Dus1","termid":"PBO:0088306"}


id: GO:0060046
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the acrosome reaction.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"acrosome reaction","termid":"GO:0007340"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of acrosome reaction","termid":"GO:0060046"}


id: FYPO:0002691
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing menadione.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000257","FYPO:0000139","FYPO:0002058","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"normal growth on menadione","synonyms":[{"name":"normal cell population growth in presence of menadione","type":"exact"},{"name":"normal cell population growth on menadione","type":"exact"},{"name":"normal cellular response to menadione","type":"related"},{"name":"normal vegetative cell population growth on menadione","type":"exact"}],"termid":"FYPO:0002691"}


id: FYPO:0003338
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the actomyosin contractile ring is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton morphology during vegetative growth","termid":"FYPO:0000350"},{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring","termid":"FYPO:0004736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0004803","FYPO:0000631","FYPO:0005447"],"is_obsolete":false,"name":"abnormal actomyosin contractile ring morphology","synonyms":[{"name":"abnormal actomyosin contractile ring morphology during mitotic cell cycle","type":"related"},{"name":"abnormal actomyosin contractile ring morphology during vegetative growth","type":"exact"},{"name":"abnormal contractile ring morphology","type":"exact"},{"name":"abnormal cytokinetic contractile ring morphology","type":"exact"},{"name":"abnormal mitotic contractile ring morphology","type":"exact"}],"termid":"FYPO:0003338"}


id: PBO:0002552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-acylglycerol-3-phosphate O-acyltransferase Slc1 (predicted)","termid":"PBO:0002552"}


id: PBO:0083359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps the verified gene RPL13B/YMR142C","termid":"PBO:0083359"}


id: PBO:0003627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nicotinamide riboside kinase (predicted)","termid":"PBO:0003627"}


id: PBO:0002468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spindle pole body protein Nuf2","termid":"PBO:0002468"}


id: PBO:0111759
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology domain","termid":"PBO:0111759"}


id: MONDO:0001002
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pulmonary siderosis (obsolete MONDO:0001002)","termid":"MONDO:0001002","xrefs":{"Monarch":{"xref_id":"0001002"}}}


id: GO:1903343
data:
  {"annotated_genes":["SJAG_00100","SJAG_03048"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104175,110177],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905263"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of meiotic DNA double-strand break formation.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:25103240"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of DNA metabolic process","termid":"GO:0051054"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"is_a","term_name":"regulation of meiotic DNA double-strand break formation","termid":"GO:1903341"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"meiotic DNA double-strand break formation","termid":"GO:0042138"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00100":null,"SJAG_03048":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0007049"],"is_obsolete":false,"name":"positive regulation of meiotic DNA double-strand break formation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of meiotic DNA double-strand break formation","type":"narrow"},{"name":"up regulation of meiotic DNA double-strand break formation","type":"exact"},{"name":"up-regulation of meiotic DNA double-strand break formation","type":"exact"},{"name":"upregulation of meiotic DNA double-strand break formation","type":"exact"}],"termid":"GO:1903343","terms_by_termid":{"GO:1905263":null}}


id: MONDO:0700255
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Paraneoplastic syndrome that involves the renal system.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urinary system disorder","termid":"MONDO:0002118"},{"relation_name":"is_a","term_name":"paraneoplastic syndrome","termid":"MONDO:0021073"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paraneoplastic renal syndrome","termid":"MONDO:0700255","xrefs":{"Monarch":{"xref_id":"0700255"}}}


id: PBO:0041867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caspase 14","termid":"PBO:0041867"}


id: MONDO:1011404
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Metabolic syndrome that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nutritional disorder, non-human animal","termid":"MONDO:1011338"},{"relation_name":"is_a","term_name":"syndromic disease, non-human animal","termid":"MONDO:1011360"},{"relation_name":"is_a","term_name":"inborn errors of metabolism, non-human animal","termid":"MONDO:1012979"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metabolic syndrome, non-human animal","secondary_identifiers":["OMIA:001898"],"termid":"MONDO:1011404","xrefs":{"Monarch":{"xref_id":"1011404"}}}


id: MONDO:0000332
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease caused by infection with Neorickettsia sennetsu.","definition_xrefs":["MONDO:patterns/infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"ehrlichiosis","termid":"MONDO:0016003"},{"relation_name":"is_a","term_name":"primary bacterial infectious disease","termid":"MONDO:0000314"},{"relation_name":"is_a","term_name":"Neorickettsia infectious disease","termid":"MONDO:0024416"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sennetsu fever","secondary_identifiers":["MEDGEN:105459","NORD:1703","UMLS:C0520779","GARD:120","DOID:0050485","ICD9:088.89","MESH:C537582","SCTID:21013006"],"synonyms":[{"name":"Human Ehrlichial infection, sennetsu type","type":"related"},{"name":"Neorickettsia sennetsu caused disease or disorder","type":"exact"},{"name":"Neorickettsia sennetsu disease or disorder","type":"exact"},{"name":"Neorickettsia sennetsu infectious disease","type":"exact"},{"name":"sennetsu ehrlichiosis","type":"related"},{"name":"sennetsu fever","type":"exact"}],"termid":"MONDO:0000332","xrefs":{"Monarch":{"xref_id":"0000332"}}}


id: GO:0062045
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysine + pyruvate= epsilon-amino-alpha-ketocaproic acid (KAC) + alanine.","definition_xrefs":["PMID:27758894","PMID:28330936"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0016769","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"L-lysine alpha-aminotransferase","termid":"GO:0062045"}


id: GO:0072752
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a rapamycin stimulus.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to ether","termid":"GO:0071362"},{"relation_name":"is_a","term_name":"cellular response to alcohol","termid":"GO:0097306"},{"relation_name":"is_a","term_name":"response to rapamycin","termid":"GO:1901355"},{"relation_name":"is_a","term_name":"cellular response to ketone","termid":"GO:1901655"},{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to rapamycin","termid":"GO:0072752"}


id: PBO:0075911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST13, Hsp70 interacting protein pseudogene 3","termid":"PBO:0075911"}


id: PATO:0000533
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000533 osmotic response sensitivity (obsolete PATO:0000533)","termid":"PATO:0000533"}


id: PBO:0056337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase kinase kinase 20","termid":"PBO:0056337"}


id: PBO:0004206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-tubulin","termid":"PBO:0004206"}


id: PBO:0043360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calsyntenin 2","termid":"PBO:0043360"}


id: MONDO:0005190
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Macroglobulinemia is the presence of increased levels of macroglobulins in the circulating blood. It is a Plasma cell dyscrasia, resembling leukemia, with cells of lymphocytic, plasmacytic, or intermediate morphology, which secrete a monoclonal immunoglobulin M component. There is diffuse infiltration by the malignant cells of the bone marrow and also, in many cases, of the spleen, liver, or lymph nodes. The circulating macroglobulin can produce symptoms of hyperviscosity syndrome: weakness, fatigue, bleeding disorders, and visual disturbances. Peak incidence of macroglobulinemia is in the sixth and seventh decades of life.","definition_xrefs":["EFO:0002616"],"gene_count":0,"genotype_count":0,"name":"obsolete macroglobulinemia (obsolete MONDO:0005190)","secondary_identifiers":["SCTID:190817009","DOID:9080","ICD10CM:C88.0","ICD9:273.3","Wikipedia:Macroglobulinemia","NCIT:C3212","MESH:D008258","NCIT:C80307"],"synonyms":[{"name":"primary macroglobulinemia","type":"exact"}],"termid":"MONDO:0005190","xrefs":{"Monarch":{"xref_id":"0005190"}}}


id: PBO:0058831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 8061","termid":"PBO:0058831"}


id: PBO:0017551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy/CVT pathway ENTH/VHS domain protein Tax4(predicted)","termid":"PBO:0017551"}


id: PBO:0047490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferrochelatase","termid":"PBO:0047490"}


id: PBO:0108763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-phosphoerythronate phosphatase/2-phosphoglycolate phophatase, involved in detoxification of glycolytic by-products","termid":"PBO:0108763"}


id: MONDO:0008833
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any renal-hepatic-pancreatic dysplasia in which the cause of the disease is a mutation in the NPHP3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal-hepatic-pancreatic dysplasia","termid":"MONDO:0017417"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"renal-hepatic-pancreatic dysplasia 1","secondary_identifiers":["UMLS:C3715199","GARD:18431","MEDGEN:811626","OMIM:208540"],"synonyms":[{"name":"NPHP3 renal-hepatic-pancreatic dysplasia","type":"exact"},{"name":"RHPD1","type":"related"},{"name":"Rhpd","type":"related"},{"name":"renal-hepatic-pancreatic dysplasia 1","type":"exact"},{"name":"renal-hepatic-pancreatic dysplasia caused by mutation in NPHP3","type":"exact"},{"name":"renal-hepatic-pancreatic dysplasia type 1","type":"exact"}],"termid":"MONDO:0008833","xrefs":{"Monarch":{"xref_id":"0008833"}}}


id: MONDO:0100493
data:
  {"annotated_genes":["SJAG_00185"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87210],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009709"}]},"cv_name":"mondo","definition":"Autosomal recessive form of TTN-related myopathy.","definition_xrefs":["MONDO:patterns/autosomal_recessive"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"TTN-related myopathy","termid":"MONDO:0100175"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00185":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0006025","MONDO:0002320"],"is_obsolete":false,"name":"autosomal recessive titinopathy","references_by_uniquename":{"PB_REF:0000006":null},"synonyms":[{"name":"TTN-related myopathy, autosomal recessive","type":"exact"}],"termid":"MONDO:0100493","terms_by_termid":{"MONDO:0009709":null},"xrefs":{"Monarch":{"xref_id":"0100493"}}}


id: PBO:0003660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NatB N-acetyltransferase complex regulatory subunit Naa25","termid":"PBO:0003660"}


id: PBO:0017913
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mcm2, Mcm4, and Mcm7 associate with chromatin simultaneously","termid":"PBO:0017913"}


id: PBO:0061400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"natriuretic peptide receptor 1","termid":"PBO:0061400"}


id: PBO:0085401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane protein involved in protoprophyrin and heme transport; roles in the uptake of protoprophyrin IX and the efflux of heme; expression is induced under both low-heme and low-oxygen conditions; member of the fungal lipid-translocating exporter (LTE) family of proteins","termid":"PBO:0085401"}


id: GO:1903464
data:
  {"annotated_genes":["SJAG_02162","SJAG_01068","SJAG_03048","SJAG_01210"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[118693],"is_not":false,"summary":null,"term":"GO:1903464"},{"annotations":[99556,104166,110713],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903467"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of mitotic cell cycle DNA replication.","definition_xrefs":["GOC:TermGenie","PMID:1234","GOC:mtg_cell_cycle","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of mitotic cell cycle","termid":"GO:0045930"},{"relation_name":"is_a","term_name":"negative regulation of nuclear cell cycle DNA replication","termid":"GO:1902576"},{"relation_name":"is_a","term_name":"regulation of mitotic cell cycle DNA replication","termid":"GO:1903463"},{"relation_name":"negatively_regulates","term_name":"mitotic DNA replication","termid":"GO:1902969"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01068":null,"SJAG_01210":null,"SJAG_02162":null,"SJAG_03048":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0006259"},{"rel_name":"negatively_regulates","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006260","GO:0008150","GO:0006259","GO:0007049"],"is_obsolete":false,"name":"negative regulation of mitotic cell cycle DNA replication","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"down regulation of DNA replication involved in S phase involved in mitotic cell cycle","type":"exact"},{"name":"down regulation of DNA replication involved in S-phase involved in mitotic cell cycle","type":"exact"},{"name":"down regulation of mitotic cell cycle DNA replication","type":"exact"},{"name":"down regulation of mitotic nuclear cell cycle DNA replication","type":"exact"},{"name":"down regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"},{"name":"down-regulation of DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"down-regulation of DNA replication involved in S phase involved in mitotic cell cycle","type":"exact"},{"name":"down-regulation of DNA replication involved in S-phase involved in mitotic cell cycle","type":"exact"},{"name":"down-regulation of mitotic cell cycle DNA replication","type":"exact"},{"name":"down-regulation of mitotic nuclear cell cycle DNA replication","type":"exact"},{"name":"down-regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"},{"name":"downregulation of DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"downregulation of DNA replication involved in S phase involved in mitotic cell cycle","type":"exact"},{"name":"downregulation of DNA replication involved in S-phase involved in mitotic cell cycle","type":"exact"},{"name":"downregulation of mitotic cell cycle DNA replication","type":"exact"},{"name":"downregulation of mitotic nuclear cell cycle DNA replication","type":"exact"},{"name":"downregulation of nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"},{"name":"inhibition of DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"inhibition of DNA replication involved in S phase involved in mitotic cell cycle","type":"narrow"},{"name":"inhibition of DNA replication involved in S-phase involved in mitotic cell cycle","type":"narrow"},{"name":"inhibition of mitotic cell cycle DNA replication","type":"narrow"},{"name":"inhibition of mitotic nuclear cell cycle DNA replication","type":"narrow"},{"name":"inhibition of nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"},{"name":"negative regulation of DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"negative regulation of DNA replication involved in S phase involved in mitotic cell cycle","type":"exact"},{"name":"negative regulation of DNA replication involved in S-phase involved in mitotic cell cycle","type":"exact"},{"name":"negative regulation of mitotic nuclear cell cycle DNA replication","type":"exact"},{"name":"negative regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"}],"termid":"GO:1903464","terms_by_termid":{"GO:1903464":null,"GO:1903467":null}}


id: FYECO:0000455
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which leucine was completely excluded from the experimental medium/buffer..","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping absent","termid":"FYECO:0000120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histidine absent","termid":"FYECO:0000455"}


id: GO:0019278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-sugar catabolic process","termid":"GO:0009227"},{"relation_name":"is_a","term_name":"UDP-N-acetylgalactosamine metabolic process","termid":"GO:0019276"},{"relation_name":"is_a","term_name":"amino sugar catabolic process","termid":"GO:0046348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"UDP-N-acetylgalactosamine catabolic process","synonyms":[{"name":"UDP-N-acetylgalactosamine breakdown","type":"exact"},{"name":"UDP-N-acetylgalactosamine catabolism","type":"exact"},{"name":"UDP-N-acetylgalactosamine degradation","type":"exact"}],"termid":"GO:0019278"}


id: GO:1903742
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of anterograde synaptic vesicle transport.","definition_xrefs":["PMID:25329901","GO_REF:0000058","GOC:kmv","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vesicle transport along microtubule","termid":"GO:1901608"},{"relation_name":"is_a","term_name":"regulation of synaptic vesicle transport","termid":"GO:1902803"},{"relation_name":"regulates","term_name":"anterograde synaptic vesicle transport","termid":"GO:0048490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of anterograde synaptic vesicle transport","termid":"GO:1903742"}


id: GO:0004719
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + protein L-beta-aspartate = S-adenosyl-L-homocysteine + protein L-beta-aspartate methyl ester.","definition_xrefs":["EC:2.1.1.77"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"},{"relation_name":"is_a","term_name":"protein carboxyl O-methyltransferase activity","termid":"GO:0051998"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003824","GO:0140096","GO:0003674","GO:0016741","GO:0016740","GO:0008276"],"is_obsolete":false,"name":"protein-L-isoaspartate (D-aspartate) O-methyltransferase activity","secondary_identifiers":["MetaCyc:2.1.1.77-RXN","RHEA:12705","Reactome:R-HSA-5676966"],"synonyms":[{"name":"D-aspartyl/L-isoaspartyl methyltransferase activity","type":"related"},{"name":"L-aspartyl/L-isoaspartyl protein methyltransferase activity","type":"related"},{"name":"L-isoaspartyl protein carboxyl methyltransferase activity","type":"related"},{"name":"L-isoaspartyl/D-aspartyl protein carboxyl methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:protein-L-isoaspartate O-methyltransferase activity","type":"related"},{"name":"protein (D-aspartate) methyltransferase activity","type":"related"},{"name":"protein D-aspartate methyltransferase activity","type":"related"},{"name":"protein L-isoaspartate methyltransferase activity","type":"related"},{"name":"protein L-isoaspartyl methyltransferase activity","type":"related"},{"name":"protein O-methyltransferase (L-isoaspartate)","type":"related"},{"name":"protein beta-aspartate O-methyltransferase activity","type":"related"},{"name":"protein-L-isoaspartate O-methyltransferase activity","type":"related"},{"name":"protein-L-isoaspartate(D-aspartate) O-methyltransferase activity","type":"related"},{"name":"protein-beta-aspartate O-methyltransferase activity","type":"related"}],"termid":"GO:0004719"}


id: MONDO:0017094
data:
  {"annotated_genes":["SJAG_05346","SJAG_00289","SJAG_02723","SJAG_03067","SJAG_00991"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88352,88354,88356,88355,88353],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011818"}]},"cv_name":"mondo","definition":"Abnormalities in the development of the cerebral cortex. These include malformations arising from abnormal neuronal and glial cell proliferation or apoptosis (Group I); abnormal neuronal migration (Group ii); and abnormal establishment of cortical organization (Group iii). Many inborn metabolic brain disorders affecting cns formation are often associated with cortical malformations. They are common causes of epilepsy and developmental delay.","definition_xrefs":["MESH:D054220"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00289":null,"SJAG_00991":null,"SJAG_02723":null,"SJAG_03067":null,"SJAG_05346":null},"genotype_count":0,"is_obsolete":false,"name":"cerebral cortical dysplasia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:20982","NCIT:C42088","Orphanet:268950","SCTID:253153000","UMLS:C0431380","MEDGEN:98129","icd11.foundation:1352548261"],"synonyms":[{"name":"brain cortical dysplasia","type":"exact"},{"name":"cortical dysplasia","type":"exact"}],"termid":"MONDO:0017094","terms_by_termid":{"MONDO:0011818":null},"xrefs":{"Monarch":{"xref_id":"0017094"}}}


id: PBO:0031154
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_myo-inositol_import","termid":"PBO:0031154"}


id: GO:0043769
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex composed of four polypeptides, a telomere-protecting terminal protein (Tpg), a telomere-associated protein (Tap), DNA polymerase (PolA) and topoisomerase I (TopA), that functions in the replication of the telomeric regions of linear chromosomes, plasmids and circular replicons of some bacterial species.","definition_xrefs":["PMID:15353591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telomere cap complex","termid":"GO:0000782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005694"],"is_obsolete":false,"name":"Tpg-containing telomere binding complex","synonyms":[{"name":"telomere complex","type":"broad"}],"termid":"GO:0043769"}


id: _global:has_exclusion_reason
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_exclusion_reason","termid":"_global:has_exclusion_reason","xrefs":{"Monarch":{"xref_id":"has_exclusion_reason"}}}


id: PBO:0043337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CLN6 transmembrane ER protein","termid":"PBO:0043337"}


id: PBO:0088341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin II essential light chain","termid":"PBO:0088341"}


id: PBO:0017609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ammonium transmembrane transporter Amt2","termid":"PBO:0017609"}


id: PBO:0040063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARPIN-AP3S2 readthrough","termid":"PBO:0040063"}


id: PBO:0080957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 1","termid":"PBO:0080957"}


id: PBO:0047680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"filamin C","termid":"PBO:0047680"}


id: MONDO:0004219
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A yolk sac tumor that arises from the testis and is characterized by the presence of collections of vesicles that are surrounded by connective tissue.","definition_xrefs":["NCIT:C39930"],"direct_ancestors":[{"relation_name":"is_a","term_name":"testicular yolk sac tumor","termid":"MONDO:0003402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"polyvesicular vitelline pattern testicular yolk sac tumor","secondary_identifiers":["UMLS:C1515311","DOID:7435","MEDGEN:273638"],"synonyms":[{"name":"testicular yolk Sac tumor, polyvesicular vitelline pattern","type":"related"}],"termid":"MONDO:0004219","xrefs":{"Monarch":{"xref_id":"0004219"}}}


id: PBO:0063585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PET117 cytochrome c oxidase chaperone","termid":"PBO:0063585"}


id: PBO:0063004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"platelet activating factor acetylhydrolase 1b regulatory subunit 1 pseudogene 1","termid":"PBO:0063004"}


id: PBO:0063103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(ADP-ribose) glycohydrolase pseudogene 1","termid":"PBO:0063103"}


id: PBO:0005304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteasome component beta 3, Pup3 (predicted)","termid":"PBO:0005304"}


id: PBO:0058358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4731","termid":"PBO:0058358"}


id: GO:0005779
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the peroxisomal membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of peroxisomal membrane (obsolete GO:0005779)","synonyms":[{"name":"integral to peroxisomal membrane","type":"narrow"}],"termid":"GO:0005779"}


id: PBO:0064214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase C beta 1","termid":"PBO:0064214"}


id: GO:1904754
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vascular associated smooth muscle cell migration.","definition_xrefs":["GO_REF:0000058","GOC:BHF","GOC:TermGenie","PMID:20693317","GOC:rph","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of smooth muscle cell migration","termid":"GO:0014911"},{"relation_name":"is_a","term_name":"regulation of vascular associated smooth muscle cell migration","termid":"GO:1904752"},{"relation_name":"positively_regulates","term_name":"vascular associated smooth muscle cell migration","termid":"GO:1904738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vascular associated smooth muscle cell migration","synonyms":[{"name":"activation of vascular associated smooth muscle cell migration","type":"narrow"},{"name":"activation of vascular smooth muscle cell migration","type":"narrow"},{"name":"positive regulation of vascular smooth muscle cell migration","type":"exact"},{"name":"up regulation of vascular associated smooth muscle cell migration","type":"exact"},{"name":"up regulation of vascular smooth muscle cell migration","type":"exact"},{"name":"up-regulation of vascular associated smooth muscle cell migration","type":"exact"},{"name":"up-regulation of vascular smooth muscle cell migration","type":"exact"},{"name":"upregulation of vascular associated smooth muscle cell migration","type":"exact"},{"name":"upregulation of vascular smooth muscle cell migration","type":"exact"}],"termid":"GO:1904754"}


id: GO:0045247
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex located in the cytosol containing flavin adenine dinucleotide (FAD) that, together with an acyl-CoA dehydrogenase, forms a system that oxidizes an acyl-CoA molecule and reduces ubiquinone and other acceptors.","definition_xrefs":["GOC:mtg_sensu","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"electron transfer flavoprotein complex","termid":"GO:0045251"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005829","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"cytosolic electron transfer flavoprotein complex","termid":"GO:0045247"}


id: GO:0050419
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-hydroxymandelonitrile = 4-hydroxybenzaldehyde + hydrocyanate.","definition_xrefs":["RHEA:15977"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"hydroxymandelonitrile lyase activity","secondary_identifiers":["EC:4.1.2.11","MetaCyc:HYDROXYMANDELONITRILE-LYASE-RXN"],"synonyms":[{"name":"(S)-4-hydroxymandelonitrile 4-hydroxybenzaldehyde-lyase (cyanide-forming)","type":"related"},{"name":"(S)-4-hydroxymandelonitrile hydroxybenzaldehyde-lyase activity","type":"related"},{"name":"hydroxynitrile lyase activity","type":"broad"},{"name":"sorghum hydroxynitrile lyase activity","type":"related"}],"termid":"GO:0050419"}


id: PBO:0088983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces japonicus specific protein with predicted signal peptide","termid":"PBO:0088983"}


id: MONDO:0100453
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A retinopathy caused by biallelic variants in the GUCY2D gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"GUCY2D retinopathy","termid":"MONDO:0100454"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005328"],"is_obsolete":false,"name":"GUCY2D-related recessive retinopathy","synonyms":[{"name":"CORD6","type":"narrow"},{"name":"CRB","type":"narrow"},{"name":"GUCY2D Leber congenital amaurosis","type":"narrow"},{"name":"GUCY2D cone-rod dystrophy","type":"narrow"},{"name":"LCA","type":"narrow"},{"name":"LCA1","type":"narrow"},{"name":"Leber congenital amaurosis 1","type":"narrow"},{"name":"Leber congenital amaurosis caused by mutation in GUCY2D","type":"narrow"},{"name":"Leber congenital amaurosis type 1","type":"narrow"},{"name":"RCD2","type":"narrow"},{"name":"amaurosis congenita of Leber 1","type":"narrow"},{"name":"amaurosis congenita of Leber I","type":"narrow"},{"name":"amaurosis congenita of Leber, type 1","type":"narrow"},{"name":"cone-rod dystrophy 6","type":"narrow"},{"name":"cone-rod dystrophy caused by mutation in GUCY2D","type":"narrow"},{"name":"cone-rod dystrophy type 6","type":"narrow"},{"name":"night blindness, congenital stationary, type 1I","type":"narrow"},{"name":"recessive GUCY2D retinopathy","type":"exact"},{"name":"retinal blindness, congenital","type":"narrow"},{"name":"retinal cone dystrophy 2","type":"narrow"}],"termid":"MONDO:0100453","xrefs":{"Monarch":{"xref_id":"0100453"}}}


id: PBO:0064633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPARG coactivator 1 beta","termid":"PBO:0064633"}


id: GO:2000230
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of pancreatic stellate cell proliferation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of fibroblast proliferation","termid":"GO:0048147"},{"relation_name":"is_a","term_name":"regulation of pancreatic stellate cell proliferation","termid":"GO:2000229"},{"relation_name":"negatively_regulates","term_name":"pancreatic stellate cell proliferation","termid":"GO:0072343"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of pancreatic stellate cell proliferation","termid":"GO:2000230"}


id: PBO:0029663
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_endodeoxyribonuclease_activity","termid":"PBO:0029663"}


id: MONDO:0011530
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mesomelic dysplasia, Savarirayan type is characterized by severely hypoplastic and triangular-shaped tibiae, and absence of the fibulae. So far, two sporadic cases have been described. Moderate mesomelia of the upper limbs, proximal widening of the ulnas, pelvic anomalies and marked bilateral glenoid hypoplasia were also reported.","definition_xrefs":["Orphanet:85170"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesomelic dysplasia","termid":"MONDO:0023599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"mesomelic dysplasia, Savarirayan type","secondary_identifiers":["GARD:10584","MESH:C565349","icd11.foundation:1627637820","SCTID:715652002","UMLS:C1854470","MEDGEN:343129","OMIM:605274"],"synonyms":[{"name":"mesomelic dysplasia Savarirayan type","type":"related"},{"name":"mesomelic dysplasia with absent fibulas and triangular tibias","type":"exact"},{"name":"mesomelic dysplasia, Savarirayan type","type":"exact"},{"name":"triangular tibia and fibular aplasia","type":"related"},{"name":"triangular tibia-fibular aplasia syndrome","type":"exact"}],"termid":"MONDO:0011530","xrefs":{"Monarch":{"xref_id":"0011530"}}}


id: GO:0004106
data:
  {"annotated_genes":["SJAG_00518"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76652],"is_not":false,"summary":null,"term":"GO:0004106"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: chorismate = prephenate.","definition_xrefs":["EC:5.4.99.5","RHEA:13897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular transferase activity","termid":"GO:0016866"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00518":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"chorismate mutase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["KEGG_REACTION:R01715","MetaCyc:CHORISMATEMUT-RXN"],"synonyms":[{"name":"chorismate pyruvatemutase activity","type":"related"},{"name":"hydroxyphenylpyruvate synthase activity","type":"broad"}],"termid":"GO:0004106","terms_by_termid":{"GO:0004106":null}}


id: PBO:0050880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IDI1 pseudogene 3","termid":"PBO:0050880"}


id: PBO:0005133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HD domain metal dependent phosphohydrolase (predicted)","termid":"PBO:0005133"}


id: PBO:0082581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chorismate mutase; catalyzes the conversion of chorismate to prephenate to initiate the tyrosine/phenylalanine-specific branch of aromatic amino acid biosynthesis","termid":"PBO:0082581"}


id: MONDO:0017403
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial isolated arrhythmogenic right ventricular dysplasia","termid":"MONDO:0016342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"familial isolated arrhythmogenic ventricular dysplasia, right dominant form","secondary_identifiers":["MEDGEN:1864032","UMLS:C5925015","Orphanet:293910","GARD:17347"],"synonyms":[{"name":"familial isolated arrhythmogenic ventricular cardiomyopathy, classic form","type":"exact"},{"name":"familial isolated arrhythmogenic ventricular cardiomyopathy, right dominant form","type":"exact"},{"name":"familial isolated arrhythmogenic ventricular dysplasia, classic form","type":"exact"}],"termid":"MONDO:0017403","xrefs":{"Monarch":{"xref_id":"0017403"}}}


id: PBO:0087820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TFIID subunit (47 kDa); involved in promoter binding and RNA polymerase II transcription initiation","termid":"PBO:0087820"}


id: GO:1902034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of hematopoietic stem cell proliferation.","definition_xrefs":["PMID:23403623","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hematopoietic stem cell proliferation","termid":"GO:1902033"},{"relation_name":"is_a","term_name":"negative regulation of hemopoiesis","termid":"GO:1903707"},{"relation_name":"is_a","term_name":"negative regulation of stem cell proliferation","termid":"GO:2000647"},{"relation_name":"negatively_regulates","term_name":"hematopoietic stem cell proliferation","termid":"GO:0071425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hematopoietic stem cell proliferation","synonyms":[{"name":"down regulation of hematopoietic stem cell proliferation","type":"exact"},{"name":"down regulation of hemopoietic stem cell proliferation","type":"exact"},{"name":"down-regulation of hematopoietic stem cell proliferation","type":"exact"},{"name":"down-regulation of hemopoietic stem cell proliferation","type":"exact"},{"name":"downregulation of hematopoietic stem cell proliferation","type":"exact"},{"name":"downregulation of hemopoietic stem cell proliferation","type":"exact"},{"name":"inhibition of hematopoietic stem cell proliferation","type":"narrow"},{"name":"inhibition of hemopoietic stem cell proliferation","type":"narrow"},{"name":"negative regulation of hemopoietic stem cell proliferation","type":"exact"}],"termid":"GO:1902034"}


id: MOD:00101
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to L-lysine amide.","definition_xrefs":["RESID:AA0092","PubMed:6579533"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C1-amidated residue","termid":"MOD:00883"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-lysine amide","synonyms":[{"name":"(2S)-2,6-diaminohexanamide","type":"exact"},{"name":"L-lysine amide","type":"exact"},{"name":"LysN","type":"exact"},{"name":"MOD_RES Lysine amide","type":"exact"},{"name":"amidated L-lysine","type":"exact"},{"name":"lysinamide","type":"exact"}],"termid":"MOD:00101"}


id: PBO:0065016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin 2","termid":"PBO:0065016"}


id: PBO:0046969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 83 member F","termid":"PBO:0046969"}


id: PBO:0003894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein, CENP-K ortholog, Sim4","termid":"PBO:0003894"}


id: PBO:0050957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon kappa","termid":"PBO:0050957"}


id: PR:Q10167
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC26A3.14c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10167"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C26A3.14c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC26A3.14c","synonyms":[{"name":"Spom972h-SPAC26A3.14c","type":"exact"}],"termid":"PR:Q10167"}


id: GO:0043219
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Non-compact myelin located adjacent to the nodes of Ranvier in a myelin segment. These non-compact regions include cytoplasm from the cell responsible for synthesizing the myelin. Lateral loops are found in the paranodal region adjacent to the nodes of Ranvier, while Schmidt-Lantermann clefts are analogous structures found within the compact myelin internode.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"myelin sheath","termid":"GO:0043209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"lateral loop","secondary_identifiers":["NIF_Subcellular:sao1354781919","NIF_Subcellular:sao1067215520"],"synonyms":[{"name":"Schwann cell paranodal termination","type":"related"},{"name":"oligodendrocyte paranodal termination","type":"related"},{"name":"paranodal loop","type":"related"}],"termid":"GO:0043219"}


id: FYPO:0004151
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of pyridoxine measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular pyridoxine level","synonyms":[{"name":"decreased cellular pyridoxine level during mitotic cell cycle","type":"related"},{"name":"decreased cellular pyridoxine level during vegetative growth","type":"exact"},{"name":"decreased pyridoxine accumulation","type":"related"},{"name":"reduced cellular pyridoxine level","type":"exact"}],"termid":"FYPO:0004151"}


id: PBO:0073718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SKP2 pseudogene 1","termid":"PBO:0073718"}


id: GO:0022616
data:
  {"annotated_genes":["SJAG_03780","SJAG_02667","SJAG_02294","SJAG_03495","SJAG_04210","SJAG_00884","SJAG_05979","SJAG_00198","SJAG_01010","SJAG_00729","SJAG_05239","SJAG_02182","SJAG_00874","SJAG_05197","SJAG_00814","SJAG_02908","SJAG_05232","SJAG_02690","SJAG_04877","SJAG_02818","SJAG_04879","SJAG_00618","SJAG_02199","SJAG_00272","SJAG_04183","SJAG_01823","SJAG_00863","SJAG_01762","SJAG_04190"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109748],"is_not":false,"summary":null,"term":"GO:0022616"},{"annotations":[72646,79078,75129],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006271"},{"annotations":[111767,68951,72040,66863,114352,115406,117246],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902983"},{"annotations":[76545],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006273"},{"annotations":[72057,76544],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006272"},{"annotations":[104626,97020,106023,120042,106741,110928],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903459"},{"annotations":[95739,106742,109164,97021,97053,106024,91349,108795],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903460"},{"annotations":[105949,73841,96838,102435,94426,102401,103299],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1903461"}]},"cv_name":"biological_process","definition":"The DNA metabolic process in which an existing DNA strand is extended by activities including the addition of nucleotides to the 3' end of the strand.","definition_xrefs":["GOC:mah","GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolic process","termid":"GO:0006259"}],"gene_count":29,"genes_by_uniquename":{"SJAG_00198":null,"SJAG_00272":null,"SJAG_00618":null,"SJAG_00729":null,"SJAG_00814":null,"SJAG_00863":null,"SJAG_00874":null,"SJAG_00884":null,"SJAG_01010":null,"SJAG_01762":null,"SJAG_01823":null,"SJAG_02182":null,"SJAG_02199":null,"SJAG_02294":null,"SJAG_02667":null,"SJAG_02690":null,"SJAG_02818":null,"SJAG_02908":null,"SJAG_03495":null,"SJAG_03780":null,"SJAG_04183":null,"SJAG_04190":null,"SJAG_04210":null,"SJAG_04877":null,"SJAG_04879":null,"SJAG_05197":null,"SJAG_05232":null,"SJAG_05239":null,"SJAG_05979":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"DNA strand elongation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"termid":"GO:0022616","terms_by_termid":{"GO:0006271":null,"GO:0006272":null,"GO:0006273":null,"GO:0022616":null,"GO:1902983":null,"GO:1903459":null,"GO:1903460":null,"GO:1903461":null}}


id: GO:0060932
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized structural and/or functional features of a cell of the His-Purkinje system. These cells form the fibers regulate cardiac muscle contraction in the ventricles.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac muscle cell differentiation","termid":"GO:0055007"},{"relation_name":"part_of","term_name":"His-Purkinje system development","termid":"GO:0003164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"His-Purkinje system cell differentiation","termid":"GO:0060932"}


id: GO:0044678
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that in Methanobacterium thermoautotrophicum is composed of six subunits, and in Methanosarcina barkeri contains is composed of either two subunits or nine subunits. Catalyzes the conversion of coenzyme B, coenzyme M, and methanophenazine to form N-{7-[(2-sulfoethyl)dithio]heptanoyl}-3-O-phospho-L-threonine and dihydromethanophenazine.","definition_xrefs":["PMID:9063468","PMID:8174566","GOC:mengo_curators","PMID:8119281"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"CoB-CoM heterodisulfide reductase complex","synonyms":[{"name":"coenzyme M-7-mercaptoheptanoylthreonine-phosphate-heterodisulfide hydrogenase complex","type":"exact"},{"name":"hydrogen:coenzyme-M-7-mercaptoheptanoylthreonine-phosphate-heterodisulfide oxidoreductase complex","type":"exact"}],"termid":"GO:0044678"}


id: PBO:0078114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 3","termid":"PBO:0078114"}


id: PBO:0049249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRPEL2 pseudogene 3","termid":"PBO:0049249"}


id: MONDO:1010667
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary thrombopathia associated with a defect in the ADP receptor P2Y12 in dogs due to a variation in the P2Y12 gene.","definition_xrefs":["PMID:36815741"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"thrombopathia, non-human animal","termid":"MONDO:1011695"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bleeding disorder P2RY12-related, dog","secondary_identifiers":["OMIA:001564-9615"],"termid":"MONDO:1010667","xrefs":{"Monarch":{"xref_id":"1010667"}}}


id: GO:1900767
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving fonsecin.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol metabolic process","termid":"GO:0006066"},{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"polyketide metabolic process","termid":"GO:0030638"},{"relation_name":"is_a","term_name":"naphtho-gamma-pyrone metabolic process","termid":"GO:1900785"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0019748"],"is_obsolete":false,"name":"fonsecin metabolic process","synonyms":[{"name":"fonsecin metabolism","type":"exact"}],"termid":"GO:1900767"}


id: GO:0021691
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the cerebellar Purkinje cell layer to attain its fully functional state. The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells.","definition_xrefs":["GOC:cls","GOC:dgh","GOC:dph","ISBN:0838580343","GOC:jid","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"cerebellar Purkinje cell layer development","termid":"GO:0021680"},{"relation_name":"part_of","term_name":"cerebellar cortex maturation","termid":"GO:0021699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar Purkinje cell layer maturation","termid":"GO:0021691"}


