# terms

id: PBO:0016992
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein, flocculin, related to Gsf2","termid":"PBO:0016992"}


id: PBO:0060404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-alpha-acetyltransferase 15, NatA auxiliary subunit","termid":"PBO:0060404"}


id: PBO:0028943
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_(1->3)-beta-D-glucan_level_at_cell_tip","termid":"PBO:0028943"}


id: GO:0031286
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of sorocarp stalk cell differentiation. An example of this process is found in Dictyostelium discoideum.","definition_xrefs":["PMID:4338436","GOC:kp","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sorocarp stalk cell differentiation","termid":"GO:0031285"},{"relation_name":"is_a","term_name":"negative regulation of response to nutrient levels","termid":"GO:0032108"},{"relation_name":"is_a","term_name":"negative regulation of cell differentiation","termid":"GO:0045596"},{"relation_name":"is_a","term_name":"negative regulation of spore-bearing organ development","termid":"GO:0075262"},{"relation_name":"negatively_regulates","term_name":"sorocarp stalk cell differentiation","termid":"GO:0031149"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of sorocarp stalk cell differentiation","synonyms":[{"name":"down regulation of stalk cell differentiation","type":"exact"},{"name":"down-regulation of stalk cell differentiation","type":"exact"},{"name":"downregulation of stalk cell differentiation","type":"exact"},{"name":"inhibition of stalk cell differentiation","type":"narrow"},{"name":"negative regulation of stalk cell differentiation","type":"exact"}],"termid":"GO:0031286"}


id: MONDO:0850339
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A high grade ependymoma that is located within the posterior fossa.","definition_xrefs":["DOID:0080889"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anaplastic ependymoma","termid":"MONDO:0016700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"posterior fossa ependymoma","secondary_identifiers":["UMLS:C5670542","NCIT:C186443","MEDGEN:1811888"],"termid":"MONDO:0850339","xrefs":{"Monarch":{"xref_id":"0850339"}}}


id: PBO:0089612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium transport factor","termid":"PBO:0089612"}


id: PBO:0108952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STBD1 pseudogene 1","termid":"PBO:0108952"}


id: MOD:01068
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a hydrogen atom of an L-tryptophan residue with a halogen atom.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"halogen containing residue","termid":"MOD:00694"},{"relation_name":"is_a","term_name":"modified L-tryptophan residue","termid":"MOD:00918"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"halogenated tryptophan","synonyms":[{"name":"HalTrp","type":"exact"}],"termid":"MOD:01068"}


id: GO:0032822
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of natural killer cell proliferation as part of an immune response.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of immune effector process","termid":"GO:0002699"},{"relation_name":"is_a","term_name":"positive regulation of natural killer cell proliferation","termid":"GO:0032819"},{"relation_name":"is_a","term_name":"regulation of natural killer cell proliferation involved in immune response","termid":"GO:0032820"},{"relation_name":"positively_regulates","term_name":"natural killer cell proliferation involved in immune response","termid":"GO:0002324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of natural killer cell proliferation involved in immune response","synonyms":[{"name":"activation of natural killer cell proliferation during immune response","type":"narrow"},{"name":"positive regulation of NK cell proliferation during immune response","type":"related"},{"name":"positive regulation of natural killer cell proliferation during immune response","type":"related"},{"name":"stimulation of natural killer cell proliferation during immune response","type":"narrow"},{"name":"up regulation of natural killer cell proliferation during immune response","type":"related"},{"name":"up-regulation of natural killer cell proliferation during immune response","type":"related"},{"name":"upregulation of natural killer cell proliferation during immune response","type":"related"}],"termid":"GO:0032822"}


id: GO:1990525
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a Baculovirus Inhibitor of apoptosis protein Repeat (BIR) domain.","definition_xrefs":["InterPro:IPR001370","GOC:ha"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"BIR domain binding","synonyms":[{"name":"Baculovirus Inhibitor of apoptosis protein Repeat domain binding","type":"exact"}],"termid":"GO:1990525"}


id: PBO:0043614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COMM domain containing 4 pseudogene 2","termid":"PBO:0043614"}


id: PBO:0026939
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_meiosis_I","termid":"PBO:0026939"}


id: MONDO:0030931
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"proteosome-associated autoinflammatory syndrome","termid":"MONDO:0009726"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0006025"],"is_obsolete":false,"name":"proteasome-associated autoinflammatory syndrome 4","secondary_identifiers":["OMIM:619183","MEDGEN:1780127","UMLS:C5543053","GARD:18449","DOID:0060915"],"synonyms":[{"name":"PRAAS4","type":"exact"},{"name":"proteasome-associated autoinflammatory syndrome 4","type":"exact"}],"termid":"MONDO:0030931","xrefs":{"Monarch":{"xref_id":"0030931"}}}


id: GO:0042213
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of m-cresol (3-hydroxytoluene), the meta-isoform of cresol.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"m-cresol metabolic process","termid":"GO:0018925"},{"relation_name":"is_a","term_name":"cresol catabolic process","termid":"GO:0046199"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"m-cresol catabolic process","secondary_identifiers":["MetaCyc:M-CRESOL-DEGRADATION-PWY","UM-BBD_pathwayID:mcr"],"synonyms":[{"name":"3-hydroxytoluene catabolic process","type":"exact"},{"name":"3-hydroxytoluene catabolism","type":"exact"},{"name":"m-cresol breakdown","type":"exact"},{"name":"m-cresol catabolism","type":"exact"},{"name":"m-cresol degradation","type":"exact"},{"name":"meta-cresol catabolic process","type":"exact"},{"name":"meta-cresol catabolism","type":"exact"}],"termid":"GO:0042213"}


id: GO:0097732
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A non-motile cilium where the axoneme has a ring of nine outer microtubule doublets plus two central microtubules (and is therefore called a 9+2 axoneme).","definition_xrefs":["PMID:21307074","GOC:cilia","PMID:22118931"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-motile cilium","termid":"GO:0097730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"9+2 non-motile cilium","synonyms":[{"name":"9+2 immotile cilium","type":"related"},{"name":"non-motile 9+2 cilium","type":"exact"}],"termid":"GO:0097732"}


id: PBO:0069001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 245, pseudogene","termid":"PBO:0069001"}


id: GO:0051658
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which the nucleus is maintained in a specific location within a cell and prevented from moving elsewhere.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus localization","termid":"GO:0051647"},{"relation_name":"is_a","term_name":"maintenance of organelle location","termid":"GO:0051657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"maintenance of nucleus location","synonyms":[{"name":"maintenance of cell nucleus location","type":"exact"},{"name":"maintenance of nucleus localization","type":"related"}],"termid":"GO:0051658"}


id: MONDO:1012306
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cutaneous papillomatosis, non-human animal","termid":"MONDO:1011741"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cutaneous papillomatosis, horse","secondary_identifiers":["OMIA:001147-9796"],"termid":"MONDO:1012306","xrefs":{"Monarch":{"xref_id":"1012306"}}}


id: GO:0071837
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an HMG box domain, a protein domain that consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin.","definition_xrefs":["PMID:18445004","GOC:yaf","InterPro:IPR009071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"HMG box domain binding","termid":"GO:0071837"}


id: PBO:0064390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PMS1 homolog 2, mismatch repair system component pseudogene 12","termid":"PBO:0064390"}


id: PBO:0000665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Gsk3","termid":"PBO:0000665"}


id: GO:0140850
data:
  {"annotated_genes":["SJAG_03006","SJAG_02319"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[118052,120714],"is_not":false,"summary":null,"term":"GO:0140850"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a ubiquitin molecule to a histone 2B at the conserved C-terminal lysine (K) residue. The last K residue is at position 119 in fission yeast, 123 in budding yeast, and 120 in mammals.","definition_xrefs":["PMID:28624371","PMID:17363370"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2B ubiquitin ligase activity","termid":"GO:0141054"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02319":null,"SJAG_03006":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0004842"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0019787","GO:0140096","GO:0016746","GO:0004842","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"histone H2B C-terminal K residue ubiquitin ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"histone H2B conserved C-terminal lysine ubiquitin ligase activity","type":"exact"},{"name":"histone H2B-K120 ubiquitin ligase activity","type":"exact"},{"name":"histone H2BK120 ubiquitin ligase activity","type":"exact"},{"name":"histone ubiquitin ligase activity (H2B-K120 specific)","type":"exact"}],"termid":"GO:0140850","terms_by_termid":{"GO:0140850":null}}


id: PBO:0065435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, ATPase 1 pseudogene 8","termid":"PBO:0065435"}


id: FYPO:0006138
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of cis-aconitate measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular cis-aconitate level","synonyms":[{"name":"increased cellular cis-aconitate level during mitotic cell cycle","type":"related"},{"name":"increased cellular cis-aconitate level during vegetative growth","type":"exact"},{"name":"increased cellular cis-aconitate(3-) anion level","type":"exact"},{"name":"increased cis-aconitate accumulation","type":"related"}],"termid":"FYPO:0006138"}


id: PBO:0017063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Mug46","termid":"PBO:0017063"}


id: GO:0046702
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of an L-fucosyl group from GDP-beta-L-fucose to a galactoside acceptor molecule, usually an N-glycan, to form an alpha(1,6)-fucosylated galactoside.","definition_xrefs":["PMID:12413479"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-(1->6)-fucosyltransferase activity","termid":"GO:0046921"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"galactoside 6-L-fucosyltransferase activity","termid":"GO:0046702"}


id: GO:0090679
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cell differentiation process that is a part of a reversible switch of a cell from one cell type or form to another, at a frequency above the expected frequency for somatic mutations.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"reversible differentiation","termid":"GO:0090677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell differentiation involved in phenotypic switching","termid":"GO:0090679"}


id: MONDO:0017020
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete secondary interstitial lung disease specific to childhood associated with a systemic disease (obsolete MONDO:0017020)","secondary_identifiers":["Orphanet:264699"],"synonyms":[{"name":"secondary ILD specific to childhood associated with a systemic disease","type":"exact"}],"termid":"MONDO:0017020","xrefs":{"Monarch":{"xref_id":"0017020"}}}


id: FYPO:0003923
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of DNA strand elongation involved in mitotic nuclear DNA replication is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased rate of DNA replication","termid":"FYPO:0001981"},{"relation_name":"is_a","term_name":"abnormal mitotic DNA replication elongation","termid":"FYPO:0006730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0001320"],"is_obsolete":false,"name":"decreased rate of mitotic DNA replication elongation","synonyms":[{"name":"decreased rate of DNA replication elongation during mitotic cell cycle","type":"related"},{"name":"decreased rate of DNA strand elongation involved in mitotic DNA replication","type":"exact"},{"name":"decreased rate of DNA strand elongation involved in nuclear cell cycle DNA replication","type":"exact"},{"name":"decreased rate of mitotic DNA replication elongation during vegetative growth","type":"exact"},{"name":"reduced rate of mitotic DNA replication elongation","type":"exact"}],"termid":"FYPO:0003923"}


id: PBO:0085176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-methyltransferase; catalyzes two different O-methylation steps in ubiquinone (Coenzyme Q) biosynthesis; component of a mitochondrial ubiquinone-synthesizing complex; phosphoprotein","termid":"PBO:0085176"}


id: PBO:0088168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD-repeat protein involved in ubiquitin-mediated protein degradation; Ub-binding protein with a role in Ub homeostasis; substrate-recruiting adaptor for Cdc48p in mitochondria-associated degradation; inhibits degradation of Ufd2p-dependent substrates; facilitates proteolysis of Cse4p, a centromeric H3-like protein; required for ribophagy; promotes NHEJ in postdiauxic/stationary phase; protein increases in abundance and relocalizes from nucleus to nuclear periphery upon DNA replication stress","termid":"PBO:0088168"}


id: MONDO:0008062
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare disorder characterized by sudden and transient episodes of loss of muscle tone. It often follows an experience of intense emotions. It is seen in patients with narcolepsy.","definition_xrefs":["NCIT:C84618"],"direct_ancestors":[{"relation_name":"is_a","term_name":"narcolepsy-cataplexy syndrome","termid":"MONDO:0016158"},{"relation_name":"is_a","term_name":"hereditary narcolepsy","termid":"MONDO:0100554"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"narcolepsy 1","secondary_identifiers":["SCTID:46263000","UMLS:C1834372","GARD:15091","MEDGEN:371809","MESH:C563534","OMIM:161400"],"synonyms":[{"name":"HCRT narcolepsy","type":"exact"},{"name":"NRCLP1","type":"related"},{"name":"cataplexy","type":"related"},{"name":"narcolepsy 1","type":"exact"},{"name":"narcolepsy caused by mutation in HCRT","type":"exact"},{"name":"narcoleptic syndrome 1","type":"related"}],"termid":"MONDO:0008062","xrefs":{"Monarch":{"xref_id":"0008062"}}}


id: GO:1990251
data:
  {"annotated_genes":["SJAG_04601","SJAG_03745","SJAG_04768","SJAG_04006","SJAG_02622","SJAG_01867","SJAG_00961","SJAG_02720"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89251,93636,94007,95213,106093,109263,113128,119964],"is_not":false,"summary":null,"term":"GO:1990251"}]},"cv_name":"cellular_component","definition":"An nuclear body involved in nuclear mRNA surveilllance. Contains at least Mmi1, or an ortholog of it, and the nuclear exosome.","definition_xrefs":["PMID:23980030","PMID:32012158","GOC:vw","GOC:al","PMID:16823445"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear body","termid":"GO:0016604"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00961":null,"SJAG_01867":null,"SJAG_02622":null,"SJAG_02720":null,"SJAG_03745":null,"SJAG_04006":null,"SJAG_04601":null,"SJAG_04768":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0005654"],"is_obsolete":false,"name":"nuclear exosome focus","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Mmi1 nuclear focus","type":"exact"},{"name":"nuclear body","type":"related"}],"termid":"GO:1990251","terms_by_termid":{"GO:1990251":null}}


id: PBO:0047754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"focadhesin","termid":"PBO:0047754"}


id: PBO:0065595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prothymosin alpha pseudogene 11","termid":"PBO:0065595"}


id: PBO:0072564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RRAS2 pseudogene 2","termid":"PBO:0072564"}


id: GO:0031244
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of the cell outer membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:dos","GOC:mah","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of membrane","termid":"GO:0019898"},{"relation_name":"part_of","term_name":"cell outer membrane","termid":"GO:0009279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"extrinsic component of cell outer membrane","synonyms":[{"name":"extrinsic to cell outer membrane","type":"narrow"}],"termid":"GO:0031244"}


id: PBO:0045814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 4","termid":"PBO:0045814"}


id: PBO:0027467
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_endocytosis_during_meiotic_cell_cycle","termid":"PBO:0027467"}


id: GO:0097069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a thyroxine stimulus.","definition_xrefs":["PMID:9916872","GOC:sjw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to amino acid stimulus","termid":"GO:0071230"},{"relation_name":"is_a","term_name":"cellular response to thyroid hormone stimulus","termid":"GO:0097067"},{"relation_name":"is_a","term_name":"response to thyroxine","termid":"GO:0097068"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"},{"relation_name":"is_a","term_name":"cellular response to L-phenylalanine derivative","termid":"GO:1904387"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to thyroxine stimulus","synonyms":[{"name":"cellular response to T4 stimulus","type":"exact"}],"termid":"GO:0097069"}


id: GO:0061065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of dauer larval development, the process whose specific outcome is the progression of the dauer larva over time, through the facultative diapause of the dauer (enduring) larval stage, with specialized traits adapted for dispersal and long-term survival, with elevated stress resistance and without feeding.","definition_xrefs":["GOC:dph","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nematode larval development","termid":"GO:0061062"},{"relation_name":"regulates","term_name":"dauer larval development","termid":"GO:0040024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dauer larval development","termid":"GO:0061065"}


id: SO:1000027
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transversion from guanine to thymine.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine_to_pyrimidine_transversion","termid":"SO:1000023"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G_to_T_transversion","synonyms":[{"name":"G to T transversion","type":"exact"}],"termid":"SO:1000027"}


id: SO:0000562
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Nine nucleotide recombination site, part of V-gene, D-gene or J-gene recombination feature of an immunoglobulin or T-cell receptor gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"vertebrate_immune_system_gene_recombination_signal_feature","termid":"SO:0000939"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nonamer_of_recombination_feature_of_vertebrate_immune_system_gene","synonyms":[{"name":"nonamer of recombination feature of vertebrate immune system gene","type":"exact"}],"termid":"SO:0000562"}


id: PBO:0067516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 657, pseudogene","termid":"PBO:0067516"}


id: GO:0008808
data:
  {"annotated_genes":["SJAG_04317"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94817],"is_not":false,"summary":null,"term":"GO:0008808"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: phosphatidylglycerol + phosphatidylglycerol = diphosphatidylglycerol (cardiolipin) + glycerol.","definition_xrefs":["GOC:jl","RHEA:31451"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidyltransferase activity","termid":"GO:0030572"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04317":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016780","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"cardiolipin synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:CARDIOLIPSYN-RXN","GO:0043788"],"synonyms":[{"name":"cardiolipin synthase 2 activity","type":"related"},{"name":"cardiolipin synthetase 2 activity","type":"related"},{"name":"cardiolipin synthetase activity","type":"broad"},{"name":"diphosphatidylglycerol synthase activity","type":"exact"}],"termid":"GO:0008808","terms_by_termid":{"GO:0008808":null}}


id: MONDO:0007772
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"pseudohypoaldosteronism type 2","termid":"MONDO:0019162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"pseudohypoaldosteronism type 2A","secondary_identifiers":["Orphanet:88938","UMLS:C1840389","icd11.foundation:646091849","GARD:16775","OMIM:145260","SCTID:703254001","MEDGEN:327088"],"synonyms":[{"name":"Gordon hyperkalemia-hypertension syndrome","type":"related"},{"name":"PHA2A","type":"exact"},{"name":"hyperpotassemia and hypertension, familial","type":"related"},{"name":"hypertensive hyperkalemia, familial","type":"related"},{"name":"pseudohypoaldosteronism, type IIA","type":"related"}],"termid":"MONDO:0007772","xrefs":{"Monarch":{"xref_id":"0007772"}}}


id: PBO:0090233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-BAR domain protein Cdc15","termid":"PBO:0090233"}


id: _global:involved_in_regulation_of
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"c involved in regulation of p if c is involved in some p' and p' regulates some p","direct_ancestors":[{"relation_name":"is_a","term_name":"acts_upstream_of","termid":"_global:acts_upstream_of"},{"relation_name":"is_a","term_name":"involved_in_or_involved_in_regulation_of","termid":"_global:involved_in_or_involved_in_regulation_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"involved_in_regulation_of","secondary_identifiers":["RO:0002428"],"termid":"_global:involved_in_regulation_of"}


id: PBO:0000538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lon protease homolog Lon1 (predicted)","termid":"PBO:0000538"}


id: PBO:0044200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cathepsin K","termid":"PBO:0044200"}


id: PBO:0041583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 22 open reading frame 39","termid":"PBO:0041583"}


id: FYPO:0000121
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which ascospore formation is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process phenotype","termid":"FYPO:0000679"},{"relation_name":"is_a","term_name":"abnormal meiotic cell cycle process","termid":"FYPO:0002739"}],"gene_count":0,"genotype_count":0,"in_subsets":["fypo_slim"],"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal sporulation","synonyms":[{"name":"abnormal ascospore formation","type":"exact"},{"name":"sporulation defects","type":"exact"},{"name":"sporulation: abnormal","type":"related"}],"termid":"FYPO:0000121"}


id: PBO:0070444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L3 pseudogene 1","termid":"PBO:0070444"}


id: PBO:0074319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMAD family member 9","termid":"PBO:0074319"}


id: GO:0005432
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Ca2+(in) + Na+(out) = Ca2+(out) + Na+(in).","definition_xrefs":["PMID:16371597","GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium ion transmembrane transporter activity","termid":"GO:0015081"},{"relation_name":"is_a","term_name":"calcium:monoatomic cation antiporter activity","termid":"GO:0015368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"calcium:sodium antiporter activity","secondary_identifiers":["RHEA:29255","Reactome:R-HSA-8949703","Reactome:R-HSA-8949688","Reactome:R-HSA-425661"],"synonyms":[{"name":"mitochondrial sodium/calcium ion exchange","type":"related"},{"name":"sodium/calcium exchanger","type":"exact"},{"name":"sodium:calcium exchange","type":"related"}],"termid":"GO:0005432"}


id: MONDO:0008180
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Failure of the soft palate to reach the posterior pharyngeal wall to close the opening between the oral and nasal cavities. Incomplete velopharyngeal closure is primarily related to surgeries (adenoidectomy; cleft palate) or an incompetent palatopharyngeal sphincter. It is characterized by hypernasal speech.","definition_xrefs":["MESH:D014681"],"direct_ancestors":[{"relation_name":"is_a","term_name":"otorhinolaryngologic disease","termid":"MONDO:0024623"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital velopharyngeal incompetence","secondary_identifiers":["GARD:5470","icd11.foundation:158386351","MEDGEN:52992","UMLS:C0042454","OMIM:167500","Orphanet:2291"],"synonyms":[{"name":"palatopharyngeal incompetence","type":"related"},{"name":"velopharyngeal incompetence","type":"related"},{"name":"velopharyngeal insufficiency","type":"related"}],"termid":"MONDO:0008180","xrefs":{"Monarch":{"xref_id":"0008180"}}}


id: PR:P36632
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rad26 gene.","definition_xrefs":["UniProtKB:P36632","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein rad26 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9E9.08","synonyms":[{"name":"Spom972h-rad26","type":"exact"}],"termid":"PR:P36632"}


id: MONDO:0019248
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of inherited lysosomal storage diseases characterized by accumulation of lipids and carbohydrates in the tissues, resulting in mental disabilities and skeletal malformations.","definition_xrefs":["NCIT:C61267"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental anomaly of metabolic origin","termid":"MONDO:0015327"},{"relation_name":"is_a","term_name":"glycoproteinosis","termid":"MONDO:0017731"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002561","MONDO:0005066"],"is_obsolete":false,"name":"mucolipidosis","secondary_identifiers":["icd11.foundation:714623911","GARD:18975","MEDGEN:7731","UMLS:C0026697","MESH:D009081","SCTID:70528007","DOID:0080488","Orphanet:79212"],"termid":"MONDO:0019248","xrefs":{"Monarch":{"xref_id":"0019248"}}}


id: PBO:0088023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U1 snRNP protein involved in splicing; interacts with the branchpoint-binding protein during the formation of the second commitment complex","termid":"PBO:0088023"}


id: GO:1902063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of betaine aldehyde.","definition_xrefs":["GOC:TermGenie","PMID:23563483","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"betaine aldehyde metabolic process","termid":"GO:1902061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"betaine aldehyde biosynthetic process","synonyms":[{"name":"betaine aldehyde anabolism","type":"exact"},{"name":"betaine aldehyde biosynthesis","type":"exact"},{"name":"betaine aldehyde formation","type":"exact"},{"name":"betaine aldehyde synthesis","type":"exact"}],"termid":"GO:1902063"}


id: GO:1901102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of gramicidin S.","definition_xrefs":["UniPathway:UPA00102","GOC:TermGenie","GOC:yaf"],"gene_count":0,"genotype_count":0,"name":"obsolete gramicidin S catabolic process (obsolete GO:1901102)","synonyms":[{"name":"gramicidin S breakdown","type":"exact"},{"name":"gramicidin S catabolism","type":"exact"},{"name":"gramicidin S degradation","type":"exact"}],"termid":"GO:1901102"}


id: GO:0042617
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of paclitaxel, a tetracyclic diterpenoid isolated originally from the bark of the Pacific yew tree, Taxus brevifolia.","definition_xrefs":["GOC:jl","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diterpenoid biosynthetic process","termid":"GO:0016102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"paclitaxel biosynthetic process","secondary_identifiers":["GO:0042616"],"synonyms":[{"name":"paclitaxel anabolism","type":"exact"},{"name":"paclitaxel biosynthesis","type":"exact"},{"name":"paclitaxel formation","type":"exact"},{"name":"paclitaxel metabolic process","type":"broad"},{"name":"paclitaxel metabolism","type":"broad"},{"name":"paclitaxel synthesis","type":"exact"},{"name":"taxol biosynthesis","type":"narrow"},{"name":"taxol biosynthetic process","type":"narrow"},{"name":"taxol metabolic process","type":"broad"},{"name":"taxol metabolism","type":"broad"}],"termid":"GO:0042617"}


id: GO:0019311
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving sorbose, the ketohexose xylo-2-hexulose. Sorbose is produced commercially by fermentation and is used as an intermediate in the manufacture of ascorbic acid.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete sorbose metabolic process (obsolete GO:0019311)","synonyms":[{"name":"sorbose metabolism","type":"exact"}],"termid":"GO:0019311"}


id: GO:0004708
data:
  {"annotated_genes":["SJAG_00993","SJAG_02342","SJAG_01181"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73222,76112,77989],"is_not":false,"summary":null,"term":"GO:0004708"}]},"cv_name":"molecular_function","definition":"Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a T-X-Y motif in the activation loop of a MAP kinase (MAPK) substrate.","definition_xrefs":["PMID:12623839","PMID:38270553"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine/tyrosine kinase activity","termid":"GO:0004712"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00993":null,"SJAG_01181":null,"SJAG_02342":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016301","GO:0003674","GO:0004672","GO:0016740","GO:0140096","GO:0003824"],"is_obsolete":false,"name":"MAP kinase kinase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-450333","EC:2.7.12.2","MetaCyc:2.7.12.2-RXN","Reactome:R-HSA-448951","Reactome:R-HSA-1247960","Reactome:R-HSA-3238999","Reactome:R-HSA-5218804"],"synonyms":[{"name":"ATP:protein phosphotransferase (MAPKKK-activated) activity","type":"related"},{"name":"ERK activator kinase activity","type":"exact"},{"name":"MAP kinase kinase 4 activity","type":"narrow"},{"name":"MAP kinase kinase 7 activity","type":"narrow"},{"name":"MAP kinase or ERK kinase activity","type":"related"},{"name":"MAP2K","type":"related"},{"name":"MAPK activator activity","type":"exact"},{"name":"MAPKK","type":"related"},{"name":"MAPKK activity","type":"exact"},{"name":"MAPKK1","type":"related"},{"name":"MEK activity","type":"broad"},{"name":"MEK1","type":"related"},{"name":"MEK2","type":"related"},{"name":"MKK","type":"related"},{"name":"MKK2","type":"related"},{"name":"MKK4","type":"related"},{"name":"MKK6","type":"related"},{"name":"MKK7","type":"related"},{"name":"STK27","type":"related"},{"name":"mitogen-activated protein kinase kinase activity","type":"related"}],"termid":"GO:0004708","terms_by_termid":{"GO:0004708":null}}


id: PATO:0001835
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A fertility which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"fertile","termid":"PATO:0000955"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased fertility","synonyms":[{"name":"high fertility","type":"exact"}],"termid":"PATO:0001835"}


id: PBO:0110502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNFRSF10B antisense RNA 1","termid":"PBO:0110502"}


id: GO:0070333
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha6-beta4 integrin complex bound to the adaptor proteins Shc and Grb2.","definition_xrefs":["PMID:7556090"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"alpha6-beta4 integrin-Shc-Grb2 complex","synonyms":[{"name":"ITGA6-ITGB4-SHC-GRB2 complex","type":"narrow"}],"termid":"GO:0070333"}


id: GO:0016709
data:
  {"annotated_genes":["SJAG_00370","SJAG_00459","SJAG_03750","SJAG_04608"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[111105],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0160224"},{"annotations":[57697],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004499"},{"annotations":[78913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004506"},{"annotations":[90246],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008398"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from NADH or NADPH and one other donor, and one atom of oxygen is incorporated into one donor.","definition_xrefs":["EC:1.14.13.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00370":null,"SJAG_00459":null,"SJAG_03750":null,"SJAG_04608":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-2162187","Reactome:R-HSA-211951","Reactome:R-HSA-6786239","Reactome:R-HSA-2162194"],"synonyms":[{"name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen","type":"related"}],"termid":"GO:0016709","terms_by_termid":{"GO:0004499":null,"GO:0004506":null,"GO:0008398":null,"GO:0160224":null}}


id: PBO:0091585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RhoGAP Rga9","termid":"PBO:0091585"}


id: GO:1905708
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the location, frequency, rate or extent of cell morphogenesis involved in conjugation with cellular fusion.","definition_xrefs":["PMID:23200991","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell morphogenesis","termid":"GO:0022604"},{"relation_name":"regulates","term_name":"cell morphogenesis involved in conjugation with cellular fusion","termid":"GO:0000753"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell morphogenesis involved in conjugation with cellular fusion","synonyms":[{"name":"regulation of shmoo orientation","type":"narrow"},{"name":"regulation of shmooing","type":"narrow"}],"termid":"GO:1905708"}


id: GO:1904218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of CDP-diacylglycerol-serine O-phosphatidyltransferase activity.","definition_xrefs":["PMID:16120614","GOC:BHF","GOC:rl","GOC:TermGenie","GO_REF:0000059"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity (obsolete GO:1904218)","synonyms":[{"name":"down regulation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down regulation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity","type":"exact"},{"name":"down regulation of CDP-diglyceride-L-serine phosphatidyltransferase activity","type":"exact"},{"name":"down regulation of CDP-diglyceride:serine phosphatidyltransferase activity","type":"exact"},{"name":"down regulation of CDP-diglycerine-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down regulation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down regulation of CDPdiglyceride-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down regulation of PS synthase activity","type":"exact"},{"name":"down regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down regulation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down regulation of phosphatidylserine synthase activity","type":"exact"},{"name":"down regulation of phosphatidylserine synthetase activity","type":"exact"},{"name":"down-regulation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down-regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down-regulation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity","type":"exact"},{"name":"down-regulation of CDP-diglyceride-L-serine phosphatidyltransferase activity","type":"exact"},{"name":"down-regulation of CDP-diglyceride:serine phosphatidyltransferase activity","type":"exact"},{"name":"down-regulation of CDP-diglycerine-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down-regulation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down-regulation of CDPdiglyceride-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down-regulation of PS synthase activity","type":"exact"},{"name":"down-regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down-regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down-regulation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"down-regulation of phosphatidylserine synthase activity","type":"exact"},{"name":"down-regulation of phosphatidylserine synthetase activity","type":"exact"},{"name":"downregulation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"downregulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"downregulation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity","type":"exact"},{"name":"downregulation of CDP-diglyceride-L-serine phosphatidyltransferase activity","type":"exact"},{"name":"downregulation of CDP-diglyceride:serine phosphatidyltransferase activity","type":"exact"},{"name":"downregulation of CDP-diglycerine-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"downregulation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"downregulation of CDPdiglyceride-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"downregulation of PS synthase activity","type":"exact"},{"name":"downregulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"downregulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"downregulation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"downregulation of phosphatidylserine synthase activity","type":"exact"},{"name":"downregulation of phosphatidylserine synthetase activity","type":"exact"},{"name":"inhibition of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity","type":"narrow"},{"name":"inhibition of CDP-diacylglycerol-serine O-phosphatidyltransferase activity","type":"narrow"},{"name":"inhibition of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity","type":"narrow"},{"name":"inhibition of CDP-diglyceride-L-serine phosphatidyltransferase activity","type":"narrow"},{"name":"inhibition of CDP-diglyceride:serine phosphatidyltransferase activity","type":"narrow"},{"name":"inhibition of CDP-diglycerine-serine O-phosphatidyltransferase activity","type":"narrow"},{"name":"inhibition of CDPdiacylglycerol-serine O-phosphatidyltransferase activity","type":"narrow"},{"name":"inhibition of CDPdiglyceride-serine O-phosphatidyltransferase activity","type":"narrow"},{"name":"inhibition of PS synthase activity","type":"narrow"},{"name":"inhibition of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity","type":"narrow"},{"name":"inhibition of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity","type":"narrow"},{"name":"inhibition of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity","type":"narrow"},{"name":"inhibition of phosphatidylserine synthase activity","type":"narrow"},{"name":"inhibition of phosphatidylserine synthetase activity","type":"narrow"},{"name":"negative regulation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"negative regulation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity","type":"exact"},{"name":"negative regulation of CDP-diglyceride-L-serine phosphatidyltransferase activity","type":"exact"},{"name":"negative regulation of CDP-diglyceride:serine phosphatidyltransferase activity","type":"exact"},{"name":"negative regulation of CDP-diglycerine-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"negative regulation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"negative regulation of CDPdiglyceride-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"negative regulation of PS synthase activity","type":"exact"},{"name":"negative regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"negative regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"negative regulation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"negative regulation of phosphatidylserine synthase activity","type":"exact"},{"name":"negative regulation of phosphatidylserine synthetase activity","type":"exact"}],"termid":"GO:1904218"}


id: PBO:0058665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6793","termid":"PBO:0058665"}


id: PBO:0001944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear cap-binding complex large subunit (predicted)","termid":"PBO:0001944"}


id: PBO:0048183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRB2 associated binding protein family member 4","termid":"PBO:0048183"}


id: PBO:0051018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insulin like growth factor 2 receptor","termid":"PBO:0051018"}


id: PBO:0036343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAK-related GC kinase Ppk11","termid":"PBO:0036343"}


id: PR:O43077
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitogen-activated protein kinase 15 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02846","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sporulation protein kinase mde3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC8D2.19","secondary_identifiers":["UniProtKB:O43077"],"synonyms":[{"name":"Spom972h-MAPK15","type":"exact"},{"name":"mei4-dependent protein 3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O43077"}


id: MONDO:1012934
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hearing loss that occurs in dogs due to a mutation in the EPS8L2 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss disorder, non-human animal","termid":"MONDO:1012969"},{"relation_name":"is_a","term_name":"inherited auditory system disease, non-human animal","termid":"MONDO:1012970"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deafness, EPS8L2-related, dog","secondary_identifiers":["OMIA:002550-9615"],"termid":"MONDO:1012934","xrefs":{"Monarch":{"xref_id":"1012934"}}}


id: GO:0106262
data:
  {"annotated_genes":["SJAG_04792"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105775],"is_not":false,"summary":null,"term":"GO:0106262"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 1-acyl-sn-glycero-3-phosphoethanolamine + an acyl-CoA = a 1,2-diacyl-sn-glycero-3-phosphoethanolamine + CoA.","definition_xrefs":["PMID:18287005","RHEA:32995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04792":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"1-acylglycerophosphoethanolamine O-acyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:2.3.1.n7"],"termid":"GO:0106262","terms_by_termid":{"GO:0106262":null}}


id: GO:0090664
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a higher than normal number of multicellular organisms living per unit area.","definition_xrefs":["GOC:mr","PMID:26439857"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to stress","termid":"GO:0006950"},{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to high population density","synonyms":[{"name":"response to crowding","type":"exact"}],"termid":"GO:0090664"}


id: GO:2001159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein localization by the Cvt pathway.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular protein transport","termid":"GO:0033157"},{"relation_name":"is_a","term_name":"regulation of vacuolar transport","termid":"GO:1903335"},{"relation_name":"is_a","term_name":"regulation of protein targeting","termid":"GO:1903533"},{"relation_name":"regulates","term_name":"cytoplasm to vacuole targeting by the Cvt pathway","termid":"GO:0032258"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006605"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0006605"],"is_obsolete":false,"name":"regulation of protein localization by the Cvt pathway","synonyms":[{"name":"regulation of cytoplasm to vacuole targeting","type":"exact"},{"name":"regulation of cytoplasm-to-vacuole targeting","type":"exact"}],"termid":"GO:2001159"}


id: MONDO:0042601
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Samson-Gardner syndrome","secondary_identifiers":["MESH:C537230","UMLS:C2931448","MEDGEN:419807"],"synonyms":[{"name":"Samson Gardner syndrome","type":"related"},{"name":"craniosynostosis, microcephaly, hydrancephaly, humero-radial synostosis, and thumb aplasia","type":"related"}],"termid":"MONDO:0042601","xrefs":{"Monarch":{"xref_id":"0042601"}}}


id: GO:0006238
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that generates CMP, cytidine monophosphate, from derivatives of it without de novo synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CMP biosynthetic process","termid":"GO:0009224"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleotide salvage","termid":"GO:0010138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"CMP salvage","synonyms":[{"name":"cytidine monophosphate salvage","type":"exact"}],"termid":"GO:0006238"}


id: MONDO:0021758
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Agranulocytosis that is autoimmune in origin.","definition_xrefs":["PMID:443260"],"direct_ancestors":[{"relation_name":"is_a","term_name":"agranulocytosis","termid":"MONDO:0001609"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"acquired agranulocytosis","secondary_identifiers":["GARD:5717","MESH:C538171","NORD:743","MEDGEN:115995","SCTID:72050006","UMLS:C0235585"],"synonyms":[{"name":"Agranulocytosis, Acquired","type":"exact"},{"name":"agranulocytic angina","type":"related"},{"name":"agranulocytosis, acquired","type":"related"},{"name":"granulocytopenia, primary","type":"related"},{"name":"neutropenia, malignant","type":"related"}],"termid":"MONDO:0021758","xrefs":{"Monarch":{"xref_id":"0021758"}}}


id: PBO:0078212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 7-5 (pseudogene)","termid":"PBO:0078212"}


id: PBO:0053699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 900","termid":"PBO:0053699"}


id: PBO:0062481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily M member 1 pseudogene","termid":"PBO:0062481"}


id: MONDO:0032817
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with cataracts, poor growth, and dysmorphic facies","secondary_identifiers":["DOID:0070346","UMLS:C5231414","MEDGEN:1684661","OMIM:618571"],"synonyms":[{"name":"NDCAGF","type":"related"},{"name":"NEURODEVELOPMENTAL DISORDER WITH CATARACTS, POOR GROWTH, AND DYSMORPHIC FACIES","type":"related"}],"termid":"MONDO:0032817","xrefs":{"Monarch":{"xref_id":"0032817"}}}


id: MONDO:0005060
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A usually painless malignant tumor that arises from adipose tissue. Microscopically, it may contain a spectrum of neoplastic adipocytes ranging from lipoblasts to pleomorphic malignant adipocytes. Morphologic variants include: well differentiated, dedifferentiated, pleomorphic, and myxoid liposarcoma. The metastatic potential is higher in less differentiated tumors.","definition_xrefs":["NCIT:C3194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipomatous cancer","termid":"MONDO:0002813"},{"relation_name":"is_a","term_name":"soft tissue sarcoma","termid":"MONDO:0018078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"liposarcoma","secondary_identifiers":["MESH:D008080","ICDO:8850/3","Orphanet:69078","SCTID:254829001","DOID:3382","UMLS:C0023827","ONCOTREE:LIPO","MEDGEN:44177","NANDO:2200065","MedDRA:10024627","GARD:6913","ICD9:171.9","EFO:0000569","NORD:1925"],"synonyms":[{"name":"lip sarcoma","type":"exact"},{"name":"liposarcoma","type":"exact"},{"name":"liposarcoma, malignant","type":"exact"},{"name":"sarcoma of lip","type":"exact"}],"termid":"MONDO:0005060","xrefs":{"Monarch":{"xref_id":"0005060"}}}


id: PBO:0042500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cadherin 19","termid":"PBO:0042500"}


id: FYPO:0002969
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle pole body is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to microtubule cytoskeleton during vegetative growth","termid":"FYPO:0000932"},{"relation_name":"is_a","term_name":"abnormal protein localization to mitotic spindle pole body","termid":"FYPO:0000939"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased protein localization to mitotic spindle pole body","synonyms":[{"name":"increased protein localisation to mitotic spindle pole body","type":"exact"},{"name":"increased protein localization to mitotic SPB","type":"exact"},{"name":"increased protein localization to spindle pole body during mitotic cell cycle","type":"related"},{"name":"increased protein localization to spindle pole body during vegetative growth","type":"exact"}],"termid":"FYPO:0002969"}


id: GO:0032124
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the macronucleus.","definition_xrefs":["GOC:jl","GOC:mah","PMID:10503190","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus organization","termid":"GO:0006997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"macronucleus organization","synonyms":[{"name":"macronuclear organization","type":"exact"},{"name":"macronuclear organization and biogenesis","type":"related"},{"name":"macronucleus organisation","type":"exact"}],"termid":"GO:0032124"}


id: GO:0016020
data:
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id: PBO:0066748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 46","termid":"PBO:0066748"}


id: GO:0042803
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an identical protein to form a homodimer.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"identical protein binding","termid":"GO:0042802"},{"relation_name":"is_a","term_name":"protein dimerization activity","termid":"GO:0046983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"protein homodimerization activity","synonyms":[{"name":"dimerization activity","type":"broad"}],"termid":"GO:0042803"}


id: MONDO:0006166
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A columnar cell lesion characterized by the presence of enlarged terminal ductal lobular units with dilated acini. The acini are lined by more than two layers of columnar epithelial cells. Prominent apical cytoplasmic snouts are present. Secretions are often present in the lumina of the dilated acini.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperplasia","termid":"MONDO:0005043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"columnar cell hyperplasia of the breast","secondary_identifiers":["EFO:1000199","MEDGEN:310623","UMLS:C1707446","NCIT:C54183"],"synonyms":[{"name":"CCH","type":"exact"},{"name":"columnar cell hyperplasia of breast","type":"exact"}],"termid":"MONDO:0006166","xrefs":{"Monarch":{"xref_id":"0006166"}}}


id: MONDO:1011973
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyknodysostosis, non-human animal","secondary_identifiers":["OMIA:002607"],"termid":"MONDO:1011973","xrefs":{"Monarch":{"xref_id":"1011973"}}}


id: GO:0090683
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A G protein-coupled receptor activity that is responsible for the sense of sweet taste.","definition_xrefs":["GOC:hat","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sweet taste receptor activity","termid":"GO:0033041"},{"relation_name":"is_a","term_name":"GPCR taste receptor activity","termid":"GO:0090681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"GPCR sweet taste receptor activity","synonyms":[{"name":"G-protein coupled receptor sweet taste receptor activity","type":"exact"}],"termid":"GO:0090683"}


id: FYPO:0006694
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 4 of histone H3 occurs to a lower extent than normal during G0 phase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization during G0","termid":"FYPO:0003871"},{"relation_name":"is_a","term_name":"abnormal histone methylation","termid":"FYPO:0006870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0002494","FYPO:0000641"],"is_obsolete":false,"name":"decreased histone H3-K4 trimethylation during G0","synonyms":[{"name":"decreased histone H3 K4 trimethylation during G0","type":"exact"},{"name":"decreased histone H3-K4 trimethylation during cell quiescence","type":"exact"},{"name":"decreased histone H3-K4 trimethylation during quiescence","type":"exact"},{"name":"decreased histone H3K4 trimethylation during G0","type":"exact"},{"name":"decreased histone H3K4me3 during G0","type":"exact"},{"name":"decreased histone lysine H3 K4 trimethylation during G0","type":"exact"},{"name":"reduced histone H3-K4 trimethylation during G0","type":"exact"}],"termid":"FYPO:0006694"}


id: MONDO:0004017
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"malignant pineal area germ cell neoplasm","termid":"MONDO:0002073"},{"relation_name":"is_a","term_name":"malignant teratoma","termid":"MONDO:0003514"},{"relation_name":"is_a","term_name":"extragonadal nonseminomatous germ cell tumor","termid":"MONDO:0003578"},{"relation_name":"is_a","term_name":"central nervous system immature teratoma","termid":"MONDO:0003735"},{"relation_name":"is_a","term_name":"pineal region teratoma","termid":"MONDO:0004015"},{"relation_name":"is_a","term_name":"immature teratoma","termid":"MONDO:0024746"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"pineal region immature teratoma","secondary_identifiers":["NCIT:C6755","UMLS:C1335416","MEDGEN:277516","DOID:6858"],"synonyms":[{"name":"atypical pineal teratoma","type":"exact"},{"name":"immature teratoma of pineal area","type":"exact"},{"name":"immature teratoma of pineal region","type":"exact"},{"name":"immature teratoma of the pineal area","type":"exact"},{"name":"immature teratoma of the pineal region","type":"exact"},{"name":"pineal area immature teratoma","type":"exact"}],"termid":"MONDO:0004017","xrefs":{"Monarch":{"xref_id":"0004017"}}}


id: GO:0003714
data:
  {"annotated_genes":["SJAG_04186","SJAG_01926","SJAG_00290","SJAG_02329","SJAG_03527","SJAG_02846","SJAG_03627","SJAG_04607","SJAG_04396","SJAG_04381","SJAG_04921","SJAG_03845","SJAG_02385","SJAG_00861","SJAG_04389","SJAG_01804","SJAG_01157","SJAG_00441"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71777,74905,75354,77025,79039,80839,93028,94978,95016,98997,100671,105754,106057,106117,108545,108815,111171,113925],"is_not":false,"summary":null,"term":"GO:0003714"}]},"cv_name":"molecular_function","definition":"A transcription coregulator activity that represses or decreases the transcription of specific gene sets via binding to a DNA-binding transcription factor at a specific genomic locus, either on its own or as part of a complex. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription corepressors modifies chromatin structure through covalent modification of histones. A second class remodels the conformation of chromatin in an ATP-dependent fashion. A third class modulates interactions of DNA-bound DNA-binding transcription factors with other transcription coregulators.","definition_xrefs":["GOC:txnOH-2018","PMID:10213677","PMID:16858867"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription coregulator activity","termid":"GO:0003712"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00290":null,"SJAG_00441":null,"SJAG_00861":null,"SJAG_01157":null,"SJAG_01804":null,"SJAG_01926":null,"SJAG_02329":null,"SJAG_02385":null,"SJAG_02846":null,"SJAG_03527":null,"SJAG_03627":null,"SJAG_03845":null,"SJAG_04186":null,"SJAG_04381":null,"SJAG_04389":null,"SJAG_04396":null,"SJAG_04607":null,"SJAG_04921":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0003712"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140110"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0140110","GO:0003712","GO:0003674","GO:0060090","GO:0030674"],"is_obsolete":false,"name":"transcription corepressor activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0001106"],"synonyms":[{"name":"RNA polymerase II transcription co-repressor activity","type":"related"},{"name":"RNA polymerase II transcription corepressor activity","type":"related"},{"name":"transcription co-repressor activity","type":"exact"}],"termid":"GO:0003714","terms_by_termid":{"GO:0003714":null}}


id: MONDO:0010502
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any X-linked syndromic intellectual disability in which the cause of the disease is a mutation in the USP9X gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intellectual disability, X-linked 99, syndromic, female-restricted","secondary_identifiers":["UMLS:C4225416","OMIM:300968","DOID:0112025","MEDGEN:899839"],"synonyms":[{"name":"MRXS99F","type":"exact"},{"name":"USP9X X-linked syndromic intellectual disability","type":"exact"},{"name":"X-linked syndromic intellectual disability caused by mutation in USP9X","type":"exact"},{"name":"intellectual developmental disorder, X-linked 99, syndromic, female-restricted, X-linked dominant","type":"exact"},{"name":"intellectual disability, X-linked 99, syndromic, female-restricted","type":"exact"},{"name":"mental retardation, X-linked 99, syndromic, female-restricted","type":"exact"}],"termid":"MONDO:0010502","xrefs":{"Monarch":{"xref_id":"0010502"}}}


id: MONDO:0013493
data:
  {"annotated_genes":["SJAG_03313"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88482],"is_not":false,"summary":null,"term":"MONDO:0013493"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03313":null},"genotype_count":0,"is_obsolete":false,"name":"acetyl-coa carboxylase deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:613933","MEDGEN:124338","MESH:C562678","UMLS:C0268603"],"synonyms":[{"name":"ACACAD","type":"exact"},{"name":"ACETYL-CoA carboxylase deficiency","type":"related"},{"name":"Acaca deficiency","type":"related"},{"name":"Acc1 deficiency","type":"related"}],"termid":"MONDO:0013493","terms_by_termid":{"MONDO:0013493":null},"xrefs":{"Monarch":{"xref_id":"0013493"}}}


id: MONDO:0002249
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease characterized by higher than normal platelet counts in the peripheral blood.","direct_ancestors":[{"relation_name":"is_a","term_name":"blood platelet disease","termid":"MONDO:0002245"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"thrombocytosis disease","secondary_identifiers":["MESH:D013922","SCTID:6631009","ICD9:289.9","MEDGEN:163397","UMLS:C0836924","DOID:2228","NCIT:C35530"],"synonyms":[{"name":"Platelet count increased","type":"exact"},{"name":"Thrombocythaemia","type":"exact"},{"name":"elevated Platelet count","type":"exact"},{"name":"thrombocytosis","type":"related"}],"termid":"MONDO:0002249","xrefs":{"Monarch":{"xref_id":"0002249"}}}


id: PBO:0076233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SURF1 cytochrome c oxidase assembly factor","termid":"PBO:0076233"}


id: PBO:0084848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the large subunit; homologous to bacterial L35 and human MRPL35 ribosomal proteins","termid":"PBO:0084848"}


id: MONDO:0014473
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive primary microcephaly in which the cause of the disease is a mutation in the CENPE gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive primary microcephaly","termid":"MONDO:0016660"},{"relation_name":"is_a","term_name":"Seckel syndrome","termid":"MONDO:0019342"},{"relation_name":"is_a","term_name":"primordial dwarfism and slender bone disorder","termid":"MONDO:0800063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0700092"],"is_obsolete":false,"name":"microcephaly 13, primary, autosomal recessive","secondary_identifiers":["OMIM:616051","DOID:0070283","MEDGEN:863517","UMLS:C4015080","GARD:16054"],"synonyms":[{"name":"CENPE autosomal recessive primary microcephaly","type":"exact"},{"name":"MCPH13","type":"related"},{"name":"autosomal recessive primary microcephaly caused by mutation in CENPE","type":"exact"},{"name":"microcephaly 13, primary, autosomal recessive","type":"exact"}],"termid":"MONDO:0014473","xrefs":{"Monarch":{"xref_id":"0014473"}}}


id: PR:O14354
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mgm101 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial genome maintenance protein mgm101 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC30D10.08","synonyms":[{"name":"Spom972h-mgm101","type":"exact"}],"termid":"PR:O14354"}


id: GO:0009730
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a carbohydrate stimulus is received by a cell and converted into a molecular signal.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of chemical stimulus","termid":"GO:0009593"},{"relation_name":"is_a","term_name":"response to carbohydrate","termid":"GO:0009743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of carbohydrate stimulus","synonyms":[{"name":"perception of carbohydrate stimulus","type":"related"}],"termid":"GO:0009730"}


id: GO:0048262
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Determination of asymmetry from the dorsal to the ventral side; as, the dorsoventral axis.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"determination of bilateral symmetry","termid":"GO:0009855"},{"relation_name":"part_of","term_name":"dorsal/ventral pattern formation","termid":"GO:0009953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"determination of dorsal/ventral asymmetry","synonyms":[{"name":"determination of adaxial/abaxial asymmetry","type":"related"},{"name":"determination of dorsal-ventral asymmetry","type":"exact"},{"name":"determination of dorsoventral asymmetry","type":"exact"}],"termid":"GO:0048262"}


id: PBO:0062363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily W member 1 pseudogene","termid":"PBO:0062363"}


id: GO:0023037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a light signal causes activation of a receptor.","definition_xrefs":["GOC:mtg_signal"],"gene_count":0,"genotype_count":0,"name":"obsolete signal initiation by light (obsolete GO:0023037)","synonyms":[{"name":"signal initiation by light","type":"exact"}],"termid":"GO:0023037"}


id: PBO:0055265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2692","termid":"PBO:0055265"}


id: PBO:0080314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 78 pseudogene","termid":"PBO:0080314"}


id: PBO:0054514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1914","termid":"PBO:0054514"}


id: PBO:0075679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SQLE divergent transcript","termid":"PBO:0075679"}


id: MONDO:0700153
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from the lung in dogs and is characterized by the presence of malignant glandular epithelial cells.","definition_xrefs":["NCIT:C129299"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenocarcinoma, non-human animal","termid":"MONDO:0700099"},{"relation_name":"is_a","term_name":"respiratory system disorder, non-human animal","termid":"MONDO:0700104"},{"relation_name":"is_a","term_name":"cancer, dog","termid":"MONDO:1012570"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canine lung adenocarcinoma","termid":"MONDO:0700153","xrefs":{"Monarch":{"xref_id":"0700153"}}}


id: PBO:0029249
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-actin_filaments_present_in_increased_numbers","termid":"PBO:0029249"}


id: PBO:0052512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLHL25 pseudogene 1","termid":"PBO:0052512"}


id: PBO:0066074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinoic acid receptor responder 2 pseudogene 2","termid":"PBO:0066074"}


id: GO:1990399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regrowth of lost or destroyed epithelium.","definition_xrefs":["GOC:sl","PMID:19845688"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue regeneration","termid":"GO:0042246"},{"relation_name":"is_a","term_name":"epithelium development","termid":"GO:0060429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelium regeneration","synonyms":[{"name":"regeneration of epithelium","type":"exact"}],"termid":"GO:1990399"}


id: PBO:0080586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 11","termid":"PBO:0080586"}


id: PBO:0040316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase F1 subunit beta","termid":"PBO:0040316"}


id: MONDO:0019962
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lymphoma primarily involving the thyroid gland.","definition_xrefs":["NCIT:C5265"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thyroid cancer","termid":"MONDO:0002108"},{"relation_name":"is_a","term_name":"primary organ-specific lymphoma","termid":"MONDO:0017207"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0004992"],"is_obsolete":false,"name":"thyroid lymphoma","secondary_identifiers":["UMLS:C1336753","MEDGEN:234947","icd11.foundation:571063415","Orphanet:97285","GARD:19359","DOID:10011"],"synonyms":[{"name":"lymphoma of the thyroid","type":"exact"},{"name":"lymphoma of the thyroid gland","type":"exact"},{"name":"lymphoma of thyroid","type":"exact"},{"name":"lymphoma of thyroid gland","type":"exact"},{"name":"primary thyroid gland lymphoma","type":"exact"},{"name":"thyroid gland lymphoma","type":"exact"},{"name":"thyroid lymphoma","type":"exact"}],"termid":"MONDO:0019962","xrefs":{"Monarch":{"xref_id":"0019962"}}}


id: SO:0000774
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transmissible element containing genes involved in metabolism, analogous to the pathogenicity islands of gram negative bacteria.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"genomic_island","termid":"SO:0000772"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metabolic_island","synonyms":[{"name":"metabolic island","type":"exact"}],"termid":"SO:0000774"}


id: PBO:0081896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 847, pseudogene","termid":"PBO:0081896"}


id: PBO:0054832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2245","termid":"PBO:0054832"}


id: GO:0004588
data:
  {"annotated_genes":["SJAG_00694"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75004],"is_not":false,"summary":null,"term":"GO:0004588"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: orotidine 5'-phosphate + diphosphate = orotate + 5-phospho-alpha-D-ribose 1-diphosphate.","definition_xrefs":["EC:2.4.2.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00694":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0016757","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"orotate phosphoribosyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-73567","RHEA:10380","MetaCyc:OROPRIBTRANS-RXN"],"synonyms":[{"name":"OPRT activity","type":"related"},{"name":"OPRTase activity","type":"related"},{"name":"orotate phosphoribosyl pyrophosphate transferase activity","type":"related"},{"name":"orotic acid phosphoribosyltransferase activity","type":"related"},{"name":"orotidine 5'-monophosphate pyrophosphorylase activity","type":"related"},{"name":"orotidine monophosphate pyrophosphorylase activity","type":"related"},{"name":"orotidine phosphoribosyltransferase activity","type":"related"},{"name":"orotidine-5'-phosphate diphosphorylase activity","type":"related"},{"name":"orotidine-5'-phosphate pyrophosphorylase activity","type":"related"},{"name":"orotidine-5'-phosphate:diphosphate phospho-alpha-D-ribosyl-transferase activity","type":"related"},{"name":"orotidylate phosphoribosyltransferase activity","type":"related"},{"name":"orotidylate pyrophosphorylase activity","type":"related"},{"name":"orotidylic acid phosphorylase activity","type":"related"},{"name":"orotidylic acid pyrophosphorylase activity","type":"related"},{"name":"orotidylic phosphorylase activity","type":"related"},{"name":"orotidylic pyrophosphorylase activity","type":"related"}],"termid":"GO:0004588","terms_by_termid":{"GO:0004588":null}}


id: PR:O59806
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC550.08 gene.","definition_xrefs":["UniProtKB:O59806","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized N-acetyltransferase C550.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC550.08","synonyms":[{"name":"Spom972h-SPCC550.08","type":"exact"}],"termid":"PR:O59806"}


id: GO:0045030
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a nucleotide and transmitting the signal to a heterotrimeric G-protein complex to initiate a change in cell activity, activated by UTP.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled pyrimidinergic nucleotide receptor activity","termid":"GO:0071553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"G protein-coupled UTP receptor activity","secondary_identifiers":["GO:0015065"],"synonyms":[{"name":"UTP-activated nucleotide receptor activity","type":"broad"},{"name":"purinoceptor type U","type":"broad"},{"name":"uridine nucleotide receptor activity","type":"broad"}],"termid":"GO:0045030"}


id: FYPO:0007698
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the activity of a DNA strand exchange inhibitor is absent.","definition_xrefs":["PomBase:mah","PMID:33493431"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic activity regulator phenotype","termid":"FYPO:0007690"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652"],"is_obsolete":false,"name":"abolished DNA strand exchange inhibitor activity","synonyms":[{"name":"DNA strand exchange inhibitor activity abolished","type":"exact"},{"name":"abolished RecA-family recombinase inhibitor activity","type":"exact"},{"name":"abolished negative regulation of RecA-family recombinase activity","type":"related"}],"termid":"FYPO:0007698"}


id: PBO:0085309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphatase with sequence similarity to Mih1p; member of the Cdc25p subfamily of tyrosine phosphatases and Arr2p, an arsenate reductase, based on the presence of a rhodanese-homology domain; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus","termid":"PBO:0085309"}


id: PBO:0069983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1278, pseudogene","termid":"PBO:0069983"}


id: GO:0060688
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of branching morphogenesis, the process in which the anatomical structures of branches are generated and organized.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure morphogenesis","termid":"GO:0022603"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"morphogenesis of a branching structure","termid":"GO:0001763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of morphogenesis of a branching structure","termid":"GO:0060688"}


id: GO:0097551
data:
  {"annotated_genes":["SJAG_05373"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[81089],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097552"}]},"cv_name":"biological_process","definition":"The repair of double-strand breaks in mitochondrial DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix.","definition_xrefs":["GOC:di","PMID:22214610"],"direct_ancestors":[{"relation_name":"is_a","term_name":"double-strand break repair","termid":"GO:0006302"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05373":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006281"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0006281"],"is_obsolete":false,"name":"mitochondrial double-strand break repair","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"mtDSB repair","type":"exact"}],"termid":"GO:0097551","terms_by_termid":{"GO:0097552":null}}


id: PR:O74421
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 3-demethylubiquinone-9 3-methyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinone biosynthesis O-methyltransferase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC162.05","secondary_identifiers":["UniProtKB:O74421"],"synonyms":[{"name":"3-demethylubiquinol 3-O-methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ubiG","type":"exact"},{"name":"polyprenyldihydroxybenzoate methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74421"}


id: GO:0042149
data:
  {"annotated_genes":["SJAG_02380","SJAG_02785","SJAG_00534","SJAG_03602","SJAG_03486","SJAG_01245","SJAG_03048"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[58906,71690,77735,77768,100209,102226],"is_not":false,"summary":null,"term":"GO:0042149"},{"annotations":[104185],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1904547"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of glucose.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to starvation","termid":"GO:0009267"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00534":null,"SJAG_01245":null,"SJAG_02380":null,"SJAG_02785":null,"SJAG_03048":null,"SJAG_03486":null,"SJAG_03602":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to glucose starvation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"termid":"GO:0042149","terms_by_termid":{"GO:0042149":null,"GO:1904547":null}}


id: PBO:0029270
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_chromatin_binding","termid":"PBO:0029270"}


id: GO:0050609
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + NAD+ + phosphonate = 2 H+ + NADH + phosphate.","definition_xrefs":["RHEA:13173","EC:1.20.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on phosphorus or arsenic in donors, with NAD(P)+ as acceptor","termid":"GO:0050499"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"phosphonate dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R05746","UM-BBD_reactionID:r1055","MetaCyc:1.20.1.1-RXN"],"synonyms":[{"name":"NAD-dependent phosphite dehydrogenas activity","type":"related"},{"name":"NAD:phosphite oxidoreductase activity","type":"related"},{"name":"phosphite dehydrogenase activity","type":"related"},{"name":"phosphonate:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0050609"}


id: PR:O94458
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1687.17c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94458"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized derlin-like protein C1687.17c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.17c","synonyms":[{"name":"Spom972h-SPAC1687.17c","type":"exact"}],"termid":"PR:O94458"}


id: MONDO:0033670
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0019497"],"is_obsolete":false,"name":"hearing loss, autosomal recessive 116","secondary_identifiers":["GARD:22664","DOID:0112162","OMIM:619093","UMLS:C5436789","MEDGEN:1726617"],"synonyms":[{"name":"DFNB116","type":"narrow"},{"name":"deafness, autosomal recessive 116","type":"narrow"}],"termid":"MONDO:0033670","xrefs":{"Monarch":{"xref_id":"0033670"}}}


id: PBO:0075037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 115-48","termid":"PBO:0075037"}


id: MONDO:0030869
data:
  {"annotated_genes":["SJAG_02339"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87448],"is_not":false,"summary":null,"term":"MONDO:0030869"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02339":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 50","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5436888","MEDGEN:1747507","OMIM:619145","DOID:0112272"],"synonyms":[{"name":"SPGF50","type":"exact"},{"name":"spermatogenic failure","type":"broad"},{"name":"spermatogenic failures 50","type":"exact"}],"termid":"MONDO:0030869","terms_by_termid":{"MONDO:0030869":null},"xrefs":{"Monarch":{"xref_id":"0030869"}}}


id: PBO:0035701
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K9_dimethylation_during_vegetative_growth","termid":"PBO:0035701"}


id: PBO:0055907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 31","termid":"PBO:0055907"}


id: PR:Q9US36
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- klf1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9US36"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein klf1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1039.05c","synonyms":[{"name":"Spom972h-klf1","type":"exact"},{"name":"krueppel-like zinc finger transcription factor 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9US36"}


id: PBO:0051941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integral membrane protein 2B pseudogene 1","termid":"PBO:0051941"}


id: PBO:0065615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTP4A2 pseudogene 1","termid":"PBO:0065615"}


id: PBO:0048980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G-patch domain containing 3","termid":"PBO:0048980"}


id: PBO:0084572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Membrane protein localized to the shmoo tip; required for cell fusion; expression regulated by mating pheromone; proposed to coordinate signaling, fusion, and polarization events required for fusion; potential Cdc28p substrate","termid":"PBO:0084572"}


id: PBO:0066687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"relaxin 2","termid":"PBO:0066687"}


id: PBO:0016518
data:
  {"annotation_feature_type":"gene","cv_name":"pathway","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mkh1-Pek1-Pmk1 MAP kinase","termid":"PBO:0016518"}


id: GO:0005615
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"extracellular region","termid":"GO:0005576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005576","GO:0005575"],"is_obsolete":false,"name":"extracellular space","secondary_identifiers":["NIF_Subcellular:sao1425028079"],"synonyms":[{"name":"intercellular space","type":"related"}],"termid":"GO:0005615"}


id: GO:1901832
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of all-trans-neoxanthin.","definition_xrefs":["GOC:yaf","PMID:11029576","UniPathway:UPA00388","GOC:TermGenie","MetaCyc:PWY-6809"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xanthophyll catabolic process","termid":"GO:0016124"},{"relation_name":"is_a","term_name":"olefinic compound catabolic process","termid":"GO:0120256"},{"relation_name":"is_a","term_name":"ether catabolic process","termid":"GO:1901502"},{"relation_name":"is_a","term_name":"all-trans-neoxanthin metabolic process","termid":"GO:1901831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"all-trans-neoxanthin catabolic process","synonyms":[{"name":"all-trans-neoxanthin breakdown","type":"exact"},{"name":"all-trans-neoxanthin catabolism","type":"exact"},{"name":"all-trans-neoxanthin degradation","type":"exact"},{"name":"neoxanthin breakdown","type":"exact"},{"name":"neoxanthin catabolic process","type":"exact"},{"name":"neoxanthin catabolism","type":"exact"},{"name":"neoxanthin degradation","type":"exact"}],"termid":"GO:1901832"}


id: MONDO:0033656
data:
  {"annotated_genes":["SJAG_06002","SJAG_04450","SJAG_06392"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87489,87490,87491],"is_not":false,"summary":null,"term":"MONDO:0033656"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex IV deficiency, nuclear-type","termid":"MONDO:0033885"}],"gene_count":3,"genes_by_uniquename":{"SJAG_04450":null,"SJAG_06002":null,"SJAG_06392":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial complex 4 deficiency, nuclear type 21","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0070506","OMIM:619065","UMLS:C5436727","GARD:16418","MEDGEN:1732562"],"synonyms":[{"name":"MC4DN21","type":"exact"},{"name":"mitochondrial complex IV deficiency, nuclear type 21","type":"exact"}],"termid":"MONDO:0033656","terms_by_termid":{"MONDO:0033656":null},"xrefs":{"Monarch":{"xref_id":"0033656"}}}


id: PBO:0052738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 30","termid":"PBO:0052738"}


id: PBO:0054424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1820","termid":"PBO:0054424"}


id: GO:0052163
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a symbiont modulates the frequency, rate or extent of the production of nitric oxide as part of the innate immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete symbiont defense to host-produced nitric oxide (obsolete GO:0052163)","synonyms":[{"name":"defense response to host innate immune response nitric oxide production","type":"narrow"},{"name":"evasion or tolerance by organism of host NO","type":"exact"},{"name":"evasion or tolerance by organism of host nitric oxide","type":"exact"},{"name":"evasion or tolerance by organism of host-produced NO","type":"exact"},{"name":"evasion or tolerance by organism of host-produced nitric oxide","type":"exact"},{"name":"evasion or tolerance by organism of nitric oxide produced by other organism involved in symbiotic interaction","type":"broad"},{"name":"evasion or tolerance by symbiont of host-produced nitric oxide","type":"exact"},{"name":"evasion or tolerance of NO produced by host in response to organism","type":"exact"},{"name":"evasion or tolerance of nitric oxide produced by host in response to organism","type":"exact"},{"name":"modulation by organism of defense-related host NO production","type":"exact"},{"name":"modulation by organism of defense-related nitric oxide production in other organism involved in symbiotic interaction","type":"broad"},{"name":"modulation by symbiont of defense-related host nitric oxide production","type":"related"},{"name":"response to defense-related host nitric oxide production","type":"related"},{"name":"response to defense-related nitric oxide production by other organism involved in symbiotic interaction","type":"broad"}],"termid":"GO:0052163"}


id: GO:0003311
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire specialized structural and functional features that characterize a pancreatic delta cell. A delta cell is a cell of the pancreas that produces somatostatin.","definition_xrefs":["GOC:dph","PMID:11076772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enteroendocrine cell differentiation","termid":"GO:0035883"},{"relation_name":"is_a","term_name":"neuroendocrine cell differentiation","termid":"GO:0061101"},{"relation_name":"part_of","term_name":"endocrine pancreas development","termid":"GO:0031018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pancreatic D cell differentiation","synonyms":[{"name":"pancreatic delta cell differentiation","type":"exact"}],"termid":"GO:0003311"}


id: PBO:0070048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 5, pseudogene","termid":"PBO:0070048"}


id: GO:0052736
data:
  {"annotated_genes":["SJAG_01017","SJAG_00667"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70966,62665],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052861"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of linkages in beta-D-glucans; beta-glucans are polysaccharides of D-glucose monomers linked by beta-glycosidic bonds.","definition_xrefs":["Wikipedia:Beta-glucan"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00667":null,"SJAG_01017":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016798","GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"beta-glucanase activity","references_by_uniquename":{"GO_REF:0000003":null},"synonyms":[{"name":"beta-D-glucanase activity","type":"exact"}],"termid":"GO:0052736","terms_by_termid":{"GO:0052861":null}}


id: MONDO:0034122
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete NAD(P)HX epimerase deficiency (obsolete MONDO:0034122)","termid":"MONDO:0034122","xrefs":{"Monarch":{"xref_id":"0034122"}}}


id: GO:1902070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of sphingolipid signaling.","definition_xrefs":["GOC:TermGenie","PMID:20870412"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of sphingolipid mediated signaling pathway","termid":"GO:1902068"},{"relation_name":"positively_regulates","term_name":"sphingolipid mediated signaling pathway","termid":"GO:0090520"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of sphingolipid mediated signaling pathway","synonyms":[{"name":"activation of sphingolipid mediated signaling pathway","type":"narrow"},{"name":"activation of sphingolipid signaling pathway","type":"related"},{"name":"positive regulation of sphingolipid signaling pathway","type":"related"},{"name":"up regulation of sphingolipid mediated signaling pathway","type":"exact"},{"name":"up regulation of sphingolipid signaling pathway","type":"related"},{"name":"up-regulation of sphingolipid mediated signaling pathway","type":"exact"},{"name":"up-regulation of sphingolipid signaling pathway","type":"related"},{"name":"upregulation of sphingolipid mediated signaling pathway","type":"exact"},{"name":"upregulation of sphingolipid signaling pathway","type":"related"}],"termid":"GO:1902070"}


id: GO:0071363
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to growth factor","termid":"GO:0070848"},{"relation_name":"is_a","term_name":"cellular response to endogenous stimulus","termid":"GO:0071495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to growth factor stimulus","termid":"GO:0071363"}


id: GO:1901885
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 2-hydroxybenzoyl-CoA.","definition_xrefs":["PMID:19757094","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA metabolic process","termid":"GO:0006637"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0006790","GO:0008150"],"is_obsolete":false,"name":"2-hydroxybenzoyl-CoA metabolic process","synonyms":[{"name":"2-hydroxybenzoyl-CoA metabolism","type":"exact"}],"termid":"GO:1901885"}


id: GO:0033337
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the dorsal fin over time, from its formation to the mature structure.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"medial fin development","termid":"GO:0033338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal fin development","termid":"GO:0033337"}


id: _global:excluded_subClassOf
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"excluded_subClassOf","termid":"_global:excluded_subClassOf","xrefs":{"Monarch":{"xref_id":"excluded_subClassOf"}}}


id: MONDO:0013965
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any lethal congenital contracture syndrome in which the cause of the disease is a mutation in the MYBPC1 gene.","definition_xrefs":["MONDO:design_pattern"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lethal congenital contracture syndrome","termid":"MONDO:0017436"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lethal congenital contracture syndrome 4","secondary_identifiers":["GARD:12645","OMIM:614915","DOID:0060654","UMLS:C3554046","MEDGEN:766960"],"synonyms":[{"name":"LCCS4","type":"related"},{"name":"MYBPC1 lethal congenital contracture syndrome","type":"exact"},{"name":"lethal congenital contracture syndrome 4","type":"exact"},{"name":"lethal congenital contracture syndrome caused by mutation in MYBPC1","type":"exact"},{"name":"lethal congenital contracture syndrome type 4","type":"exact"}],"termid":"MONDO:0013965","xrefs":{"Monarch":{"xref_id":"0013965"}}}


id: MONDO:0006854
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A term describing a soft tissue tumor which consists of two or more mesenchymal lines of differentiation, excluding a fibroblastic line of differentiation.","definition_xrefs":["NCIT:C3233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm","termid":"MONDO:0005070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mesenchymoma","secondary_identifiers":["UMLS:C0025464","EFO:1001042","DOID:2668","MESH:D008637","MEDGEN:7553","ICDO:8990/1"],"synonyms":[{"name":"mesenchymoma","type":"exact"}],"termid":"MONDO:0006854","xrefs":{"Monarch":{"xref_id":"0006854"}}}


id: PBO:0046224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C pseudogene 17","termid":"PBO:0046224"}


id: GO:1904428
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of tubulin deacetylation.","definition_xrefs":["PMID:23886946","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein modification process","termid":"GO:0031400"},{"relation_name":"is_a","term_name":"regulation of tubulin deacetylation","termid":"GO:0090043"},{"relation_name":"negatively_regulates","term_name":"tubulin deacetylation","termid":"GO:0090042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of tubulin deacetylation","synonyms":[{"name":"down regulation of tubulin deacetylation","type":"exact"},{"name":"down-regulation of tubulin deacetylation","type":"exact"},{"name":"downregulation of tubulin deacetylation","type":"exact"},{"name":"inhibition of tubulin deacetylation","type":"narrow"}],"termid":"GO:1904428"}


id: MOD:01794
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces the methyl group of a residue containing common isotopes with a 1x(13)C,3x(2)H labeled monomethylated residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(2)H deuterium labeled residue","termid":"MOD:00839"},{"relation_name":"is_a","term_name":"(13)C labeled residue","termid":"MOD:00842"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1x(13)C,3x(2)H labeled monomethylated residue","synonyms":[{"name":"Methyl:2H(3)13C(1)","type":"related"}],"termid":"MOD:01794"}


id: MONDO:0030726
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"severe congenital neutropenia","termid":"MONDO:0018542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"neutropenia, severe congenital, 9, autosomal dominant","secondary_identifiers":["MEDGEN:1802793","OMIM:619813","UMLS:C5676954"],"synonyms":[{"name":"SCN9","type":"exact"},{"name":"neutropenia, severe congenital, 9, autosomal dominant","type":"exact"}],"termid":"MONDO:0030726","xrefs":{"Monarch":{"xref_id":"0030726"}}}


id: PATO:0000206
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000206 enzyme function (obsolete PATO:0000206)","termid":"PATO:0000206"}


id: GO:0002436
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of immune complex clearance by monocytes or macrophages.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune complex clearance","termid":"GO:0002434"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"immune complex clearance by monocytes and macrophages","termid":"GO:0002436"}


id: PBO:0004501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT II complex subunit Vps25","termid":"PBO:0004501"}


id: PR:O60161
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cirhin that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR22841:SF4","PRO:DNx","OMA:SCHPO03817"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 small nucleolar RNA-associated protein 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19F5.02c","secondary_identifiers":["UniProtKB:O60161"],"synonyms":[{"name":"Spom972h-CIRH1A","type":"exact"},{"name":"U3 protein 4 required for transcription (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"U3 snoRNA-associated protein 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60161"}


id: PBO:0068561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 12, pseudogene","termid":"PBO:0068561"}


id: PBO:0003282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial respiratory chain complex assembly protein Cbp6 (predicted)","termid":"PBO:0003282"}


id: PBO:0070551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 17","termid":"PBO:0070551"}


id: GO:0004750
data:
  {"annotated_genes":["SJAG_00501"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75456],"is_not":false,"summary":null,"term":"GO:0004750"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-ribulose 5-phosphate = D-xylulose 5-phosphate.","definition_xrefs":["RHEA:13677","EC:5.1.3.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00501":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"D-ribulose-phosphate 3-epimerase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:RIBULP3EPIM-RXN","KEGG_REACTION:R01529","Reactome:R-HSA-199803","Reactome:R-HSA-71303"],"synonyms":[{"name":"D-ribulose 5-phosphate epimerase activity","type":"related"},{"name":"D-ribulose phosphate-3-epimerase activity","type":"related"},{"name":"D-ribulose-5-P 3-epimerase activity","type":"related"},{"name":"D-ribulose-5-phosphate 3-epimerase activity","type":"related"},{"name":"D-ribulose-5-phosphate epimerase activity","type":"related"},{"name":"D-xylulose-5-phosphate 3-epimerase activity","type":"related"},{"name":"erythrose-4-phosphate epimerase activity","type":"related"},{"name":"erythrose-4-phosphate isomerase activity","type":"related"},{"name":"pentose phosphate epimerase (PPE)","type":"related"},{"name":"pentose-5-phosphate 3-epimerase activity","type":"related"},{"name":"phosphoketopentose 3-epimerase activity","type":"related"},{"name":"phosphoketopentose epimerase activity","type":"related"},{"name":"phosphoribulose epimerase activity","type":"related"},{"name":"ribulose 5-phosphate 3-epimerase activity","type":"related"},{"name":"ribulose-phosphate 3-epimerase activity","type":"related"},{"name":"xylulose phosphate 3-epimerase activity","type":"related"}],"termid":"GO:0004750","terms_by_termid":{"GO:0004750":null}}


id: FYPO:0007271
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nuclear chromatin organization is abnormal, such regions containing transposons (Tf2 elements) are tethered to the centromere to a greater extent than normal.","definition_xrefs":["PomBase:mah","PMID:23084836"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization during vegetative growth","termid":"FYPO:0001352"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0000641","FYPO:0001985"],"is_obsolete":false,"name":"increased Tf body tethering to centromere","synonyms":[{"name":"increased Tf body tethering to centromere during mitotic cell cycle","type":"related"},{"name":"increased Tf body tethering to centromere during vegetative growth","type":"exact"},{"name":"increased Tf2 body tethering to centromere","type":"exact"},{"name":"increased centromere tethering of Tf2 bodies","type":"exact"}],"termid":"FYPO:0007271"}


id: PBO:0080487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand factor A domain containing 5B2","termid":"PBO:0080487"}


id: PBO:0049643
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 46","termid":"PBO:0049643"}


id: PBO:0034260
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-negatively_regulated_by","termid":"PBO:0034260"}


id: PBO:0000170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetylglucosaminyltransferase (predicted)","termid":"PBO:0000170"}


id: GO:0033077
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell differentiation","termid":"GO:0030217"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T cell differentiation in thymus","synonyms":[{"name":"T cell development in thymus","type":"related"},{"name":"thymic T cell differentiation","type":"exact"},{"name":"thymocyte cell differentiation","type":"exact"},{"name":"thymocyte differentiation","type":"exact"}],"termid":"GO:0033077"}


id: GO:0010464
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mesenchymal cell proliferation. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell population proliferation","termid":"GO:0042127"},{"relation_name":"regulates","term_name":"mesenchymal cell proliferation","termid":"GO:0010463"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mesenchymal cell proliferation","termid":"GO:0010464"}


id: MONDO:0000961
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare benign adipose tissue neoplasm located within the lumen of a bronchus. It is predominantly found in males and usually originates within the fatty tissue between bronchial cartilage. May cause irreversible pulmonary damage distally. Two-thirds of the tumors occur on the right side and most are located on the first three subdivisions of the tracheobronchial tree.","definition_xrefs":["NCIT:C5063"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"lung benign neoplasm","termid":"MONDO:0002732"},{"relation_name":"is_a","term_name":"respiratory system benign neoplasm","termid":"MONDO:0000382"},{"relation_name":"is_a","term_name":"bronchial neoplasm","termid":"MONDO:0002807"},{"relation_name":"is_a","term_name":"lipoma","termid":"MONDO:0005106"},{"relation_name":"is_a","term_name":"benign soft tissue neoplasm","termid":"MONDO:0044335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endobronchial lipoma","secondary_identifiers":["MEDGEN:208874","DOID:10183","UMLS:C0852937"],"synonyms":[{"name":"endobronchial lipoma","type":"exact"}],"termid":"MONDO:0000961","xrefs":{"Monarch":{"xref_id":"0000961"}}}


id: PBO:0079401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TUBB4B pseudogene 8","termid":"PBO:0079401"}


id: PBO:0015245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAG family molecular chaperone regulator Bag102","termid":"PBO:0015245"}


id: PBO:0079701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubinuclein 2","termid":"PBO:0079701"}


id: PBO:0090670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial CH-OH group oxidoreductase, human RTN4IP1 ortholog, implicated in mitochondrial organization or tethering","termid":"PBO:0090670"}


id: PBO:0075728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites","termid":"PBO:0075728"}


id: FYPO:0005510
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle phenotype in which the onset of anaphase of the second meiotic nuclear division begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"delayed cell cycle phase transition","termid":"FYPO:0000409"},{"relation_name":"is_a","term_name":"abnormal meiotic cell cycle phase transition","termid":"FYPO:0005274"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"meiosis II metaphase/anaphase transition delay","synonyms":[{"name":"delayed cell cycle passage through meiosis II metaphase/anaphase transition","type":"exact"},{"name":"delayed metaphase/anaphase transition of meiosis II","type":"exact"},{"name":"delayed onset of meiotic anaphase II","type":"exact"},{"name":"increased duration of meiosis II metaphase","type":"related"},{"name":"increased duration of metaphase during meiosis II","type":"related"},{"name":"meiotic cell cycle delay at second metaphase/anaphase transition","type":"exact"},{"name":"metaphase/anaphase transition delay during meiosis II","type":"exact"},{"name":"metaphase/anaphase transition delay during second meiotic nuclear division","type":"exact"}],"termid":"FYPO:0005510"}


id: PBO:0088906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase Dbp8","termid":"PBO:0088906"}


id: PBO:0071053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 55","termid":"PBO:0071053"}


id: PBO:0057629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1204","termid":"PBO:0057629"}


id: GO:0030107
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a MHC class I molecule of the HLA-A subclass to mediate signaling that inhibits activation of a lymphocyte.","definition_xrefs":["PMID:11929129","PMID:9368779","GOC:add","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inhibitory MHC class I receptor activity","termid":"GO:0032396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"HLA-A specific inhibitory MHC class I receptor activity","termid":"GO:0030107"}


id: PBO:0045102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"distal membrane arm assembly component 2 like","termid":"PBO:0045102"}


id: PBO:0064794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPM1L divergent transcript","termid":"PBO:0064794"}


id: PBO:0001082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"structure-specific endonuclease catalytic subunit","termid":"PBO:0001082"}


id: MONDO:0011109
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Multiple epiphyseal dysplasia, Lowry type is a rare primary bone dysplasia characterized by small, flat epiphyses (esp. the capital femoral epiphyses), rhizomelic shortening of limbs, cleft of secondary palate, micrognathia, mild joint contractures and facial dysmorphism (incl. mildly upward-slanting palpebral fissures, hypertelorism, broad nasal tip). Additionally reported features include scoliosis, genu valgum, mild pectus excavatum, platyspondyly, dislocated radial heads, brachydactyly, hypoplastic fibulae and talipes equinovarus.","definition_xrefs":["Orphanet:166016"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple epiphyseal dysplasia","termid":"MONDO:0016648"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"multiple epiphyseal dysplasia, Lowry type","secondary_identifiers":["MESH:C563291","SCTID:768935003","UMLS:C1832112","OMIM:601560","MEDGEN:321890","GARD:17013"],"synonyms":[{"name":"epiphyseal dysplasia, multiple, with Robin phenotype","type":"related"},{"name":"multiple epiphyseal dysplasia with ROBIN phenotype","type":"related"},{"name":"multiple epiphyseal dysplasia with Robin phenotype","type":"exact"}],"termid":"MONDO:0011109","xrefs":{"Monarch":{"xref_id":"0011109"}}}


id: GO:0007418
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the ventral midline over time, from its formation to the mature structure. In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate.","definition_xrefs":["GOC:bf","PMID:12075342","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"central nervous system development","termid":"GO:0007417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventral midline development","termid":"GO:0007418"}


id: GO:0048484
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the enteric nervous system over time, from its formation to the mature structure. The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gallbladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation.","definition_xrefs":["GOC:jid","GOC:sr","FMA:66070"],"direct_ancestors":[{"relation_name":"is_a","term_name":"system development","termid":"GO:0048731"},{"relation_name":"part_of","term_name":"autonomic nervous system development","termid":"GO:0048483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"enteric nervous system development","termid":"GO:0048484"}


id: PBO:0044392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily C member 9","termid":"PBO:0044392"}


id: FYPO:0007134
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which septation initiation network signaling is normal (i.e. indistinguishable from wild type). SIN signaling is mediated by the small GTPase Ras, and results in the initiation of contraction of the contractile ring at the beginning of cytokinesis and cell division by septum formation.","definition_xrefs":["PomBase:mah","GO:0031028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"cellular response phenotype during vegetative growth","termid":"FYPO:0001342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000298","FYPO:0001312","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal septation initiation network signaling","synonyms":[{"name":"normal SIN signaling","type":"exact"},{"name":"normal SIN signalling","type":"exact"},{"name":"normal septation initiation network signaling during mitotic cell cycle","type":"related"},{"name":"normal septation initiation network signaling during vegetative growth","type":"exact"},{"name":"normal septation initiation network signalling","type":"exact"},{"name":"normal septation initiation signaling","type":"exact"}],"termid":"FYPO:0007134"}


id: MONDO:0012780
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"celiac disease","termid":"MONDO:0005130"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"celiac disease, susceptibility to, 11","secondary_identifiers":["MEDGEN:393782","OMIM:612009","UMLS:C2677603"],"synonyms":[{"name":"CELIAC11","type":"exact"},{"name":"celiac disease, susceptibility to, 11","type":"exact"},{"name":"gluten-sensitive enteropathy, susceptibility to, 11","type":"related"}],"termid":"MONDO:0012780","xrefs":{"Monarch":{"xref_id":"0012780"}}}


id: PBO:0029903
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-haploproficient","termid":"PBO:0029903"}


id: GO:0019629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of propionate that occurs in the 2-methylcitrate cycle.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"propionate catabolic process","termid":"GO:0019543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"propionate catabolic process, 2-methylcitrate cycle","synonyms":[{"name":"propionate breakdown, 2-methylcitrate cycle","type":"exact"},{"name":"propionate degradation, 2-methylcitrate cycle","type":"exact"}],"termid":"GO:0019629"}


id: PBO:0055783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LONRF2 pseudogene 3","termid":"PBO:0055783"}


id: GO:0140786
data:
  {"annotated_genes":["SJAG_03405"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114700],"is_not":false,"summary":null,"term":"GO:0140786"}]},"cv_name":"molecular_function","definition":"Binding to and responding, e.g. by conformational change, to changes in the cellular level of glutamine.","definition_xrefs":["PMID:34535752"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid sensor activity","termid":"GO:0140785"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03405":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140299"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0098772","GO:0003674","GO:0140299"],"is_obsolete":false,"name":"glutamine sensor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"glutamine sensing activity","type":"exact"}],"termid":"GO:0140786","terms_by_termid":{"GO:0140786":null}}


id: GO:0050039
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + propane-1,2-diol = (S)-lactaldehyde + H+ + NADPH.","definition_xrefs":["RHEA:15885"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"lactaldehyde reductase (NADPH) activity","secondary_identifiers":["MetaCyc:RXN-15744","EC:1.1.1.55","KEGG_REACTION:R02259"],"synonyms":[{"name":"1,2-propanediol:NADP+ oxidoreductase activity","type":"related"},{"name":"NADP-1,2-propanediol dehydrogenase activity","type":"related"},{"name":"lactaldehyde (reduced nicotinamide adenine dinucleotide phosphate) reductase activity","type":"related"},{"name":"propane-1,2-diol:NADP+ oxidoreductase activity","type":"related"},{"name":"propanediol dehydrogenase activity","type":"related"}],"termid":"GO:0050039"}


id: PBO:0001842
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.1.1.65","termid":"PBO:0001842"}


id: MONDO:1012265
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"androgen insensitivity syndrome, non-human animal","termid":"MONDO:1011919"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"androgen insensitivity syndrome, domestic cat","secondary_identifiers":["OMIA:000991-9685"],"synonyms":[{"name":"AIS, domestic cat","type":"exact"}],"termid":"MONDO:1012265","xrefs":{"Monarch":{"xref_id":"1012265"}}}


id: GO:0019826
data:
  {"annotated_genes":["SJAG_03828","SJAG_00642","SJAG_03903","SJAG_02135","SJAG_00027","SJAG_02945","SJAG_06622","SJAG_06621"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110786,110787,110788,110789,110790,110791,110792,113548],"is_not":false,"summary":null,"term":"GO:0019826"}]},"cv_name":"molecular_function","definition":"Binding to and responding, e.g. by conformational change, to changes in the cellular level of oxygen (O2).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular sensor activity","termid":"GO:0140299"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00642":null,"SJAG_02135":null,"SJAG_02945":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140299"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0003674","GO:0140299","GO:0098772"],"is_obsolete":false,"name":"oxygen sensor activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0019826","terms_by_termid":{"GO:0019826":null}}


id: PBO:0079022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-undetermined (NNN) 5-1","termid":"PBO:0079022"}


id: MONDO:0014289
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Macrocephaly-developmental delay syndrome is a rare, intellectual disability syndrome characterized by macrocephaly, mild dysmorphic features (frontal bossing, long face, hooded eye lids with small, downslanting palpebral fissures, broad nasal bridge, and prominent chin), global neurodevelopmental delay, behavioral abnormalities (e.g. anxiety, stereotyped movements) and absence or generalized tonic-clonic seizures. Additional features reported in some patients include craniosynostosis, fifth finger clinodactyly, recurrent pneumonia, and hepatosplenomegally.","definition_xrefs":["Orphanet:397612"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"macrocephaly-developmental delay syndrome","secondary_identifiers":["DOID:0081206","OMIM:615637","UMLS:C3810225","MEDGEN:816555","GARD:17630"],"synonyms":[{"name":"MRT41","type":"related"},{"name":"intellectual disability, autosomal recessive 41","type":"related"},{"name":"intellectual disability, autosomal recessive type 41","type":"exact"},{"name":"mental retardation, autosomal recessive 41","type":"related"},{"name":"mental retardation, autosomal recessive type 41","type":"exact"}],"termid":"MONDO:0014289","xrefs":{"Monarch":{"xref_id":"0014289"}}}


id: FYPO:0004560
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to BE49385A (a GPI synthesis inhibitor, also called YW3548). Cells stop growing (and may die) at a concentration of BE49385A that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002683","FYPO:0000003","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to BE49385A","synonyms":[{"name":"hypersensitive to BE49385A","type":"exact"},{"name":"sensitive to BE49385A during mitotic cell cycle","type":"related"},{"name":"sensitive to BE49385A during vegetative growth","type":"exact"},{"name":"sensitive to YW3548","type":"exact"}],"termid":"FYPO:0004560"}


id: GO:0031808
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a H2 histamine receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled histamine receptor binding","termid":"GO:0031806"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"H2 histamine receptor binding","synonyms":[{"name":"H2 histamine receptor ligand","type":"narrow"}],"termid":"GO:0031808"}


id: MONDO:1012607
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any glycogen storage disease that occurs in horses due to a mutation in the GBE1 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycogen storage disease, non-human animal","termid":"MONDO:1011419"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycogen storage disease IV, horse","secondary_identifiers":["OMIA:000420-9796"],"synonyms":[{"name":"GBED","type":"exact"},{"name":"GSD IV","type":"exact"},{"name":"glycogen branching enzyme deficiency, horse","type":"exact"}],"termid":"MONDO:1012607","xrefs":{"Monarch":{"xref_id":"1012607"}}}


id: PBO:0069950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1243, pseudogene","termid":"PBO:0069950"}


id: GO:0071570
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the cement gland over time, from its formation to the mature structure. The cement gland is a simple mucus-secreting organ positioned at the anterior of amphibious embryos. The cement gland attaches the newly hatched embryo to a support before the hatchling can swim well or feed.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gland development","termid":"GO:0048732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cement gland development","termid":"GO:0071570"}


id: PBO:0060698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit A3 pseudogene 6","termid":"PBO:0060698"}


id: GO:0070590
data:
  {"annotated_genes":["SJAG_04184","SJAG_03057","SJAG_03587","SJAG_03483","SJAG_04236","SJAG_04483","SJAG_03013","SJAG_04868","SJAG_01321","SJAG_00974","SJAG_04238"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96240],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034413"},{"annotations":[89978,93546,90472,92018],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030476"},{"annotations":[74681],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034412"},{"annotations":[105966,115920,119638,110891,119630],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070591"}]},"cv_name":"biological_process","definition":"A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a spore wall. A spore wall is the specialized cell wall lying outside the cell membrane of a spore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall biogenesis","termid":"GO:0042546"},{"relation_name":"part_of","term_name":"sporulation resulting in formation of a cellular spore","termid":"GO:0030435"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00974":null,"SJAG_01321":null,"SJAG_03013":null,"SJAG_03057":null,"SJAG_03483":null,"SJAG_03587":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04238":null,"SJAG_04483":null,"SJAG_04868":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0071554","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"spore wall biogenesis","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0070590","terms_by_termid":{"GO:0030476":null,"GO:0034412":null,"GO:0034413":null,"GO:0070591":null}}


id: PBO:0111845
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GCK subfamily","termid":"PBO:0111845"}


id: GO:1900992
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving (-)-secologanin.","definition_xrefs":["UniPathway:UPA00328","GOC:yaf","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete (-)-secologanin metabolic process (obsolete GO:1900992)","synonyms":[{"name":"(-)-secologanin metabolism","type":"exact"}],"termid":"GO:1900992"}


id: PBO:0073590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SHMT1 pseudogene 1","termid":"PBO:0073590"}


id: GO:0010542
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of nitrate from the inside of the cell to the outside of the cell across a membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"high-affinity secondary active nitrite transmembrane transporter activity","termid":"GO:0015513"},{"relation_name":"is_a","term_name":"efflux transmembrane transporter activity","termid":"GO:0015562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"nitrate efflux transmembrane transporter activity","termid":"GO:0010542"}


id: PBO:0000597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"export adaptor Nmd3 (predicted)","termid":"PBO:0000597"}


id: PBO:0004183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras1 guanyl-nucleotide exchange factor Efc25","termid":"PBO:0004183"}


id: PBO:0030013
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_Calcofluor_White","termid":"PBO:0030013"}


id: PBO:0031896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Tor2","termid":"PBO:0031896"}


id: GO:0050022
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-arabinose + NAD+ = L-arabinono-1,4-lactone + NADH.","definition_xrefs":["EC:1.1.1.46","MetaCyc:L-ARABINOSE-1-DEHYDROGENASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"L-arabinose 1-dehydrogenase (NAD+) activity","secondary_identifiers":["RHEA:17925"],"synonyms":[{"name":"L-arabinose 1-dehydrogenase activity","type":"broad"},{"name":"L-arabinose:NAD+ 1-oxidoreductase activity","type":"related"}],"termid":"GO:0050022"}


id: GO:0036395
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled release of amylase from a cell of the pancreas.","definition_xrefs":["GOC:jc","PMID:19028687"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amylase secretion","termid":"GO:0036394"},{"relation_name":"part_of","term_name":"pancreatic juice secretion","termid":"GO:0030157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"pancreatic amylase secretion","termid":"GO:0036395"}


id: GO:0050946
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of xanthophore differentiation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of xanthophore differentiation","termid":"GO:0050938"},{"relation_name":"is_a","term_name":"positive regulation of pigment cell differentiation","termid":"GO:0050942"},{"relation_name":"positively_regulates","term_name":"xanthophore differentiation","termid":"GO:0050936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of xanthophore differentiation","synonyms":[{"name":"activation of xanthophore differentiation","type":"narrow"},{"name":"stimulation of xanthophore differentiation","type":"narrow"},{"name":"up regulation of xanthophore differentiation","type":"exact"},{"name":"up-regulation of xanthophore differentiation","type":"exact"},{"name":"upregulation of xanthophore differentiation","type":"exact"}],"termid":"GO:0050946"}


id: SO:0000158
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A cloning vector that utilizes the E. coli F factor.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vector_replicon","termid":"SO:0000440"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fosmid","secondary_identifiers":["http://en.wikipedia.org/wiki/Fosmid"],"synonyms":[{"name":"fosmid vector","type":"related"}],"termid":"SO:0000158"}


id: GO:0097503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent attachment of sialic acid to a substrate molecule.","definition_xrefs":["GOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macromolecule modification","termid":"GO:0043412"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sialylation","termid":"GO:0097503"}


id: FYPO:0006086
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which one or more bridges consisting of unresolved intertwined sister chromatids form following replication fork arrest, and persist until mitotic anaphase. Bridges contain dsDNA and RPA-bound ssDNA, and may break, resulting in unequal sister chromatid segregation.","definition_xrefs":["PomBase:mah","PMID:28475874"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal replication fork processing","termid":"FYPO:0003586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000293","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased mitotic sister chromatid bridge formation during replication fork processing","synonyms":[{"name":"anaphase bridge formation following replication fork processing","type":"related"}],"termid":"FYPO:0006086"}


id: PBO:0112987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Acetyltransferase required for biogenesis of small ribosomal subunit; conserved 18S rRNA cytosine acetyltransferase that modifies tRNAs assisted by adaptor Tan1p; responsible for incorporation of N4-acetylcytidine into mRNAs; human homolog NAT10 implicated in several types of cancer and premature aging","termid":"PBO:0112987"}


id: PBO:0005065
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.7.9","termid":"PBO:0005065"}


id: PBO:0083148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps ORF PCI8/YIL071C","termid":"PBO:0083148"}


id: PATO:0001807
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A sensitivity to irradiation which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"sensitivity to irradiation","termid":"PATO:0001806"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased sensitivity to irradiation","synonyms":[{"name":"low sensitivity to irradiation","type":"exact"}],"termid":"PATO:0001807"}


id: PBO:0091865
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ring-type zinc finger protein","termid":"PBO:0091865"}


id: MONDO:0003872
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A serous cystadenoma of the ovary characterized by the presence of small papillary projections in the inner surface of the cysts.","definition_xrefs":["NCIT:C7278"],"direct_ancestors":[{"relation_name":"is_a","term_name":"papillary adenoma","termid":"MONDO:0002533"},{"relation_name":"is_a","term_name":"ovarian papillary tumor","termid":"MONDO:0003813"},{"relation_name":"is_a","term_name":"ovarian cystadenoma","termid":"MONDO:0005183"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ovarian papillary cystadenoma","secondary_identifiers":["UMLS:C1335175","MEDGEN:233276","DOID:6405"],"synonyms":[{"name":"ovarian papillary cystadenoma","type":"exact"}],"termid":"MONDO:0003872","xrefs":{"Monarch":{"xref_id":"0003872"}}}


id: PBO:0042276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin containing TCP1 subunit 8 like 2","termid":"PBO:0042276"}


id: GO:2000414
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of fibronectin-dependent thymocyte migration.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of thymocyte migration","termid":"GO:2000411"},{"relation_name":"is_a","term_name":"regulation of fibronectin-dependent thymocyte migration","termid":"GO:2000413"},{"relation_name":"negatively_regulates","term_name":"fibronectin-dependent thymocyte migration","termid":"GO:0072681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of fibronectin-dependent thymocyte migration","synonyms":[{"name":"negative regulation of fibronectin-dependent immature T cell migration","type":"related"},{"name":"negative regulation of fibronectin-dependent immature T lymphocyte migration","type":"related"},{"name":"negative regulation of fibronectin-dependent immature T-cell migration","type":"related"},{"name":"negative regulation of fibronectin-dependent immature T-lymphocyte migration","type":"related"},{"name":"negative regulation of fibronectin-dependent thymic lymphocyte migration","type":"exact"}],"termid":"GO:2000414"}


id: PBO:0090096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAPK cascade adaptor protein Ste4","termid":"PBO:0090096"}


id: MONDO:0859275
data:
  {"annotated_genes":["SJAG_04782"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87603],"is_not":false,"summary":null,"term":"MONDO:0859275"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04782":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with spasticity, seizures, and brain abnormalities","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:620001","MEDGEN:1823970","UMLS:C5774197"],"termid":"MONDO:0859275","terms_by_termid":{"MONDO:0859275":null},"xrefs":{"Monarch":{"xref_id":"0859275"}}}


id: PBO:0059086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MON2 antisense RNA 1","termid":"PBO:0059086"}


id: GO:0033569
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of lactoferrin from one side of a membrane to the other.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein transmembrane transporter activity","termid":"GO:0008320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0140318"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215","GO:0140318"],"is_obsolete":false,"name":"lactoferrin transmembrane transporter activity","termid":"GO:0033569"}


id: GO:0036380
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-alpha-D-glucosamine + ditrans,octacis-undecaprenyl phosphate = UMP + N-acetyl-alpha-D-glucosaminyldiphospho-ditrans,octacis-undecaprenol.","definition_xrefs":["GOC:rs","EC:2.7.8.33"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016780","GO:0003674"],"is_obsolete":false,"name":"UDP-N-acetylglucosamine-undecaprenyl-phosphate N-acetylglucosaminephosphotransferase activity","secondary_identifiers":["KEGG_REACTION:R08856","RHEA:28090","MetaCyc:GLCNACPTRANS-RXN"],"synonyms":[{"name":"GlcNAc-P-P-Und synthase activity","type":"related"},{"name":"UDP-GIcNAc:undecaprenyl phosphate N-acetylglucosaminyl 1-P transferase activity","type":"related"},{"name":"UDP-GlcNAc:undecaprenyl-phosphate GlcNAc-1-phosphate transferase activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:ditrans,octacis-undecaprenyl phosphate N-acetyl-D-glucosaminephosphotransferase activity","type":"related"},{"name":"UDP-N-acetylglucosamine:undecaprenyl-phosphate GlcNAc-1-phosphate transferase activity","type":"related"}],"termid":"GO:0036380"}


id: PBO:0048824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit gamma 10","termid":"PBO:0048824"}


id: GO:0106230
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of a propionyl group from a residue in a peptide or protein.","definition_xrefs":["GOC:sp","PMID:30026585"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein deacylation","termid":"GO:0035601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein depropionylation","termid":"GO:0106230"}


id: MOD:00093
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to L-aspartic acid 1-amide.","definition_xrefs":["PubMed:2542051","RESID:AA0084"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C1-amidated residue","termid":"MOD:00883"},{"relation_name":"is_a","term_name":"modified L-aspartic acid residue","termid":"MOD:00904"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-aspartic acid 1-amide","synonyms":[{"name":"(2S)-2-amino-1-butanediamic acid","type":"exact"},{"name":"1-amidated L-aspartic acid","type":"exact"},{"name":"3,4-diamino-4-oxobutanoic acid","type":"exact"},{"name":"3-amino-succinamic acid","type":"exact"},{"name":"AspN","type":"exact"},{"name":"L-aspartic acid 1-amide","type":"exact"},{"name":"MOD_RES Aspartic acid 1-amide","type":"exact"},{"name":"alpha-asparagine","type":"exact"},{"name":"isoasparagine","type":"exact"}],"termid":"MOD:00093"}


id: GO:0034523
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3-formylsalicylic acid + O2 + H2O = 2-hydroxyisophthalic acid + hydrogen peroxide.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-formylsalicylate oxidase activity (obsolete GO:0034523)","termid":"GO:0034523"}


id: PBO:0055591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3027","termid":"PBO:0055591"}


id: PATO:0000058
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the bearer's molecules being are aerially dispersed and perceived by an odorant receptor.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"odor","termid":"PATO:0000058"}


id: MONDO:0700102
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm, non-human animal","termid":"MONDO:0700098"},{"relation_name":"is_a","term_name":"hematologic disorder, non-human animal","termid":"MONDO:1011319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphoma, non-human animal","secondary_identifiers":["OMIA:001733"],"termid":"MONDO:0700102","xrefs":{"Monarch":{"xref_id":"0700102"}}}


id: PBO:0110033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HSP90AB1 associated lncRNA 1","termid":"PBO:0110033"}


id: PR:O13846
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A fatty acid 2-hydroxylase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12863:SF0","OMA:SCHPO01681","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ceramide very long chain fatty acid hydroxylase-like protein C19G12.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19G12.08","secondary_identifiers":["UniProtKB:O13846"],"synonyms":[{"name":"Spom972h-FA2H","type":"exact"}],"termid":"PR:O13846"}


id: GO:0034055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A symbiont process in which a molecule secreted by the symbiont activates a programmed cell death pathway in the host to suppress the host innate immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated activation of host programmed cell death","termid":"GO:0052042"},{"relation_name":"is_a","term_name":"effector-mediated suppression of host innate immune response","termid":"GO:0140403"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"effector-mediated activation of host programmed cell death by symbiont","synonyms":[{"name":"activation by symbiont of host defense-related programmed cell death","type":"narrow"},{"name":"effector-mediated activation of programmed cell death in host","type":"exact"},{"name":"effector-mediated induction of programmed cell death in host","type":"exact"},{"name":"enhancement by symbiont of host defense-related programmed cell death","type":"narrow"},{"name":"positive regulation by symbiont of host defense-related PCD","type":"exact"},{"name":"positive regulation by symbiont of host defense-related programmed cell death","type":"related"},{"name":"stimulation by symbiont of host defense-related programmed cell death","type":"narrow"},{"name":"up regulation by symbiont of host defense-related programmed cell death","type":"exact"},{"name":"up-regulation by symbiont of host defense-related programmed cell death","type":"exact"},{"name":"upregulation by symbiont of host defense-related programmed cell death","type":"exact"}],"termid":"GO:0034055"}


id: GO:1903125
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A peptidyl-threonine phosphorylation that results in negative regulation of thioredoxin peroxidase activity.","definition_xrefs":["GOC:TermGenie","PMID:21850687","GOC:PARL","GO_REF:0000063","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-threonine phosphorylation","termid":"GO:0018107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of thioredoxin peroxidase activity by peptidyl-threonine phosphorylation","synonyms":[{"name":"negative regulation of TPx activity by peptidyl-threonine phosphorylation","type":"exact"},{"name":"negative regulation of TrxPx activity by peptidyl-threonine phosphorylation","type":"exact"},{"name":"negative regulation of thiol peroxidase activity by peptidyl-threonine phosphorylation","type":"exact"}],"termid":"GO:1903125"}


id: MONDO:0013969
data:
  {"annotated_genes":["SJAG_01174","SJAG_02548"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88963,88964],"is_not":false,"summary":null,"term":"MONDO:0013969"}]},"cv_name":"mondo","definition":"Any combined oxidative phosphorylation deficiency in which the cause of the disease is a mutation in the RMND1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"combined oxidative phosphorylation deficiency","termid":"MONDO:0000732"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01174":null,"SJAG_02548":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"combined oxidative phosphorylation defect type 11","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:17487","UMLS:C5190991","OMIM:614922","DOID:0111481","Orphanet:324535","MEDGEN:1682397"],"synonyms":[{"name":"COXPD11","type":"exact"},{"name":"Encephaloneuromyopathy, infantile, due to mitochondrial translation defect","type":"related"},{"name":"RMND1 combined oxidative phosphorylation deficiency","type":"exact"},{"name":"combined oxidative phosphorylation defect type 11","type":"exact"},{"name":"combined oxidative phosphorylation deficiency 11","type":"related"},{"name":"combined oxidative phosphorylation deficiency caused by mutation in RMND1","type":"exact"},{"name":"combined oxidative phosphorylation deficiency type 11","type":"exact"}],"termid":"MONDO:0013969","terms_by_termid":{"MONDO:0013969":null},"xrefs":{"Monarch":{"xref_id":"0013969"}}}


id: PBO:0055133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2552","termid":"PBO:0055133"}


id: GO:0047029
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + (R)-3-(4-hydroxyphenyl)lactate = NADPH + H+ + 3-(4-hydroxyphenyl)pyruvate.","definition_xrefs":["RHEA:52692"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"(R)-4-hydroxyphenyllactate dehydrogenase (NADP+) activity","secondary_identifiers":["MetaCyc:RXN-7632"],"synonyms":[{"name":"aromatic 2-oxoacid reductase activity","type":"broad"},{"name":"hydroxyphenylpyruvate reductase activity","type":"broad"},{"name":"phenylpyruvate reductase activity","type":"related"}],"termid":"GO:0047029"}


id: GO:0018622
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-chlorophenylacetate + NADH + O2 = 3,4-dihydroxyphenylacetate + chloride + NAD+.","definition_xrefs":["EC:1.14.12.9","RHEA:14689"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"4-chlorophenylacetate 3,4-dioxygenase activity","secondary_identifiers":["MetaCyc:1.14.12.9-RXN","KEGG_REACTION:R03306","UM-BBD_reactionID:r0308"],"synonyms":[{"name":"4-chlorophenylacetate,NADH:oxygen oxidoreductase (3,4-hydroxylating, dechlorinating)","type":"related"}],"termid":"GO:0018622"}


id: PBO:0068906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 148, pseudogene","termid":"PBO:0068906"}


id: GO:1904853
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within an ascospore wall.","definition_xrefs":["GO_REF:0000087","GOC:TermGenie","PMID:24623719"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to spore cell wall","termid":"GO:0099614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to ascospore wall","synonyms":[{"name":"protein localisation in ascospore wall","type":"exact"},{"name":"protein localisation to ascospore wall","type":"exact"},{"name":"protein localization in ascospore wall","type":"exact"}],"termid":"GO:1904853"}


id: RO:0002569
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of branching part of","direct_ancestors":[{"relation_name":"is_a","term_name":"in_branching_relationship_with","termid":"RO:0002375"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_branching_part","termid":"RO:0002569"}


id: GO:0036188
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: abieta-7,13-diene-18-al + H2O + NAD+ = abieta-7,13-diene-18-oate + NADH + H+.","definition_xrefs":["EC:1.2.1.74"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde dehydrogenase (NAD+) activity","termid":"GO:0004029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"abieta-7,13-dien-18-al (NAD+) dehydrogenase activity","secondary_identifiers":["MetaCyc:RXN-10624","KEGG_REACTION:R06357","RHEA:26225"],"synonyms":[{"name":"abieta-7,13-dien-18-al dehydrogenase activity","type":"broad"},{"name":"abietadienal dehydrogenase","type":"broad"}],"termid":"GO:0036188"}


id: PBO:0045727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E2F transcription factor 6 pseudogene 4","termid":"PBO:0045727"}


id: MONDO:0019676
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition characterized by incomplete development (hypoplasia) or absence of the outermost bones of the fingers and toes (distal phalanges) and nails. Additional features may include hypoplasia of the middle phalanges, fusion of the joints (symphalangism), broad thumbs, and webbed fingers (syndactyly). The feet are often less severely affected than the hands. There are 2 types of this condition, designated as type 1 and 2. BDB type 1 is caused by mutations in the ROR2 gene. BDB type 2 is caused by mutations in the NOG gene. Inheritance of both types is autosomal dominant. Treatment may include surgery if the condition affects hand function, or for cosmetic reasons.","definition_xrefs":["GARD:0000985"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brachydactyly","termid":"MONDO:0021004"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brachydactyly type B","secondary_identifiers":["UMLS:C1300267","GARD:985","Orphanet:93383","SCTID:389168002","icd11.foundation:1534264812","MEDGEN:722046"],"termid":"MONDO:0019676","xrefs":{"Monarch":{"xref_id":"0019676"}}}


id: MONDO:0019054
data:
  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id: PBO:0079825
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unc-51 like kinase 4","termid":"PBO:0079825"}


id: GO:1903678
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cap-independent translational initiation.","definition_xrefs":["GOC:PARL","GOC:TermGenie","GO_REF:0000058","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cap-independent translational initiation","termid":"GO:1903677"},{"relation_name":"is_a","term_name":"negative regulation of cytoplasmic translational initiation","termid":"GO:1904689"},{"relation_name":"negatively_regulates","term_name":"cap-independent translational initiation","termid":"GO:0002190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0002181"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0002181","GO:0008150"],"is_obsolete":false,"name":"negative regulation of cap-independent translational initiation","synonyms":[{"name":"down regulation of cap-independent translational initiation","type":"exact"},{"name":"down-regulation of cap-independent translational initiation","type":"exact"},{"name":"downregulation of cap-independent translational initiation","type":"exact"},{"name":"inhibition of cap-independent translational initiation","type":"narrow"}],"termid":"GO:1903678"}


id: MONDO:0006974
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A sarcoma characterized by the presence of small round or elongated malignant cells with a small amount of cytoplasm.","definition_xrefs":["NCIT:C3746"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete connective tissue cancer (obsolete MONDO:0002176)","termid":"MONDO:0002176"},{"relation_name":"is_a","term_name":"sarcoma","termid":"MONDO:0005089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"small cell sarcoma","secondary_identifiers":["MESH:D018228","UMLS:C0206652","MEDGEN:60201","DOID:3098","EFO:1001184","ICDO:8803/3"],"synonyms":[{"name":"small cell sarcoma","type":"exact"},{"name":"small cell sarcomas","type":"exact"}],"termid":"MONDO:0006974","xrefs":{"Monarch":{"xref_id":"0006974"}}}


id: PATO:0000746
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  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000746 consumption value (obsolete PATO:0000746)","termid":"PATO:0000746"}


id: MONDO:1012545
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"choroid plexus tumour, non-human animal","termid":"MONDO:1011825"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"choroid plexus tumour, dog","secondary_identifiers":["OMIA:002403-9615"],"termid":"MONDO:1012545","xrefs":{"Monarch":{"xref_id":"1012545"}}}


id: MONDO:0003501
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A squamous cell carcinoma that arises from the skin of the external ear.","definition_xrefs":["NCIT:C6083"],"direct_ancestors":[{"relation_name":"is_a","term_name":"external ear carcinoma","termid":"MONDO:0002944"},{"relation_name":"is_a","term_name":"head and neck squamous cell carcinoma","termid":"MONDO:0010150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"external ear squamous cell carcinoma","secondary_identifiers":["DOID:5538","MEDGEN:232478","UMLS:C1333494"],"synonyms":[{"name":"epidermoid carcinoma of external Ear","type":"exact"},{"name":"epidermoid carcinoma of the external Ear","type":"exact"},{"name":"epidermoid carcinoma of the external ear","type":"exact"},{"name":"external Ear epidermoid carcinoma","type":"exact"},{"name":"external Ear squamous cell carcinoma","type":"exact"},{"name":"external ear squamous cell carcinoma","type":"exact"},{"name":"squamous cell carcinoma of external Ear","type":"exact"},{"name":"squamous cell carcinoma of external ear","type":"related"},{"name":"squamous cell carcinoma of the external Ear","type":"exact"}],"termid":"MONDO:0003501","xrefs":{"Monarch":{"xref_id":"0003501"}}}


id: GO:1901602
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to dethiobiotin.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amide binding","termid":"GO:0033218"},{"relation_name":"is_a","term_name":"monocarboxylic acid binding","termid":"GO:0033293"},{"relation_name":"is_a","term_name":"heterocyclic compound binding","termid":"GO:1901363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"dethiobiotin binding","termid":"GO:1901602"}


id: MONDO:0008029
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A usually autosomal dominant inherited movement disorder caused by mutations in the COL6A1, COL6A2, and COL6A3 genes. It is characterized by progressive muscle weakness and joint stiffness in the fingers, wrists, elbows, and ankles.","definition_xrefs":["NCIT:C126688"],"direct_ancestors":[{"relation_name":"is_a","term_name":"progressive muscular dystrophy","termid":"MONDO:0016106"},{"relation_name":"is_a","term_name":"congenital muscular dystrophy","termid":"MONDO:0019950"},{"relation_name":"is_a","term_name":"congenital myopathy","termid":"MONDO:0019952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005336"],"is_obsolete":false,"name":"Bethlem myopathy","secondary_identifiers":["SCTID:718572004","GARD:873","icd11.foundation:72734329","MEDGEN:331805","NANDO:1200220","OMIMPS:158810","MESH:C535436","UMLS:C1834674","DOID:0050663","Orphanet:610"],"synonyms":[{"name":"BTHLM1","type":"related"},{"name":"Bethlem myopathy 1","type":"related"},{"name":"Bethlem myopathy type 1","type":"exact"},{"name":"benign autosomal dominant myopathy","type":"exact"},{"name":"benign congenital muscular dystrophy","type":"exact"}],"termid":"MONDO:0008029","xrefs":{"Monarch":{"xref_id":"0008029"}}}


id: PBO:0049411
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanylate cyclase 1 soluble subunit beta 2 (pseudogene)","termid":"PBO:0049411"}


id: PBO:0091285
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LAMtor","termid":"PBO:0091285"}


id: MONDO:0003840
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare benign adipose tissue neoplasm of the epicardium of the heart.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart lipoma","termid":"MONDO:0003841"},{"relation_name":"is_a","term_name":"benign neoplasm of epicardium","termid":"MONDO:0021508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"epicardium lipoma","secondary_identifiers":["MEDGEN:234221","DOID:6284","NCIT:C6742","UMLS:C1333411"],"synonyms":[{"name":"epicardial lipoma","type":"exact"},{"name":"epicardium lipoma","type":"exact"},{"name":"lipoma of epicardium","type":"exact"},{"name":"lipoma of the epicardium","type":"exact"}],"termid":"MONDO:0003840","xrefs":{"Monarch":{"xref_id":"0003840"}}}


id: PBO:0073468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sideroflexin 4","termid":"PBO:0073468"}


id: FYPO:0006371
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the duration of prophase of the first meiotic nuclear division is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell cycle phase","termid":"FYPO:0003833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal duration of meiotic prophase I","termid":"FYPO:0006371"}


id: GO:0097550
data:
  {"annotated_genes":["SJAG_03206","SJAG_01523","SJAG_03120"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72045,78959,79251],"is_not":false,"summary":null,"term":"GO:0097550"}]},"cv_name":"cellular_component","definition":"A protein-DNA complex composed of proteins binding promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription.","definition_xrefs":["GOC:di","PMID:22751016"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-DNA complex","termid":"GO:0032993"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01523":null,"SJAG_03120":null,"SJAG_03206":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"transcription preinitiation complex","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"DNA-templated transcriptional preinitiation complex","type":"exact"},{"name":"PIC","type":"narrow"},{"name":"preinitiation complex","type":"narrow"},{"name":"transcriptional pre-initiation complex","type":"exact"},{"name":"transcriptional preinitiation complex","type":"exact"}],"termid":"GO:0097550","terms_by_termid":{"GO:0097550":null}}


id: PR:O14174
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- spt20 gene.","definition_xrefs":["UniProtKB:O14174","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex subunit spt20 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4D7.10c","synonyms":[{"name":"Spom972h-spt20","type":"exact"}],"termid":"PR:O14174"}


id: PBO:0063559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pellino E3 ubiquitin protein ligase family member 3","termid":"PBO:0063559"}


id: GO:0044524
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of a protein amino acid by the addition of sulfur.","definition_xrefs":["GOC:jsg","PMID:22169477","GOC:jl","PMID:8161529","PMID:19903941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein sulfhydration","termid":"GO:0044524"}


id: GO:0020016
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  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Invagination of the plasma membrane from which a cilium (also called flagellum) protrudes.","definition_xrefs":["GOC:mb","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cilium","termid":"GO:0005929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"ciliary pocket","synonyms":[{"name":"cilial pocket","type":"exact"},{"name":"cilium pocket","type":"exact"},{"name":"flagellar pocket","type":"exact"}],"termid":"GO:0020016"}


id: GO:0031069
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the hair follicle are generated and organized.","definition_xrefs":["GOC:ln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"is_a","term_name":"hair cycle process","termid":"GO:0022405"},{"relation_name":"part_of","term_name":"hair follicle development","termid":"GO:0001942"},{"relation_name":"part_of","term_name":"epidermis morphogenesis","termid":"GO:0048730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hair follicle morphogenesis","termid":"GO:0031069"}


id: MONDO:0005003
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A chronic inflammatory process causing damage and fibrosis of the pancreatic parenchyma. Signs and symptoms include abdominal pain, malabsorption and diabetes mellitus.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pancreatitis","termid":"MONDO:0004982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"chronic pancreatitis","secondary_identifiers":["UMLS:C0149521","MEDGEN:101753","EFO:0000342","ICD9:577.1","SCTID:235494005","MESH:D050500","icd11.foundation:1758007371","NCIT:C84637"],"synonyms":[{"name":"pancreatitis, chronic","type":"exact"}],"termid":"MONDO:0005003","xrefs":{"Monarch":{"xref_id":"0005003"}}}


id: GO:0004836
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: tyramine + L-ascorbate + O2 = (R)-octopamine + L-dehydroascorbate + H2O.","definition_xrefs":["RHEA:57132","PMID:10745161"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen","termid":"GO:0016715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"tyramine-beta hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-14645"],"termid":"GO:0004836"}


id: GO:0052103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a symbiont activates, maintains or increases the frequency, rate or extent of induced systemic resistance in the host organism; induced systemic resistance is a response that confers broad spectrum systemic resistance to disease and that does not depend upon salicylic acid signaling. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06","PMID:31516360"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host induced systemic resistance","termid":"GO:0052159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated activation of host induced systemic resistance","secondary_identifiers":["GO:0052532","GO:0052533","GO:0052288"],"synonyms":[{"name":"activation by organism of ISR in host","type":"exact"},{"name":"activation by organism of induced systemic resistance in host","type":"exact"},{"name":"activation by symbiont of induced systemic resistance in host","type":"narrow"},{"name":"induction by organism of ISR in host","type":"exact"},{"name":"induction by organism of induced systemic resistance in other organism involved in symbiotic interaction","type":"broad"},{"name":"induction by symbiont of host induced systemic resistance","type":"exact"},{"name":"induction by symbiont of induced systemic resistance in host","type":"exact"},{"name":"induction of host induced systemic resistance","type":"exact"},{"name":"positive regulation by organism of induced systemic resistance in other organism involved in symbiotic interaction","type":"broad"},{"name":"positive regulation by symbiont of host induced systemic resistance","type":"related"},{"name":"positive regulation by symbiont of induced systemic resistance in host","type":"related"},{"name":"stimulation by symbiont of induced systemic resistance in host","type":"narrow"},{"name":"up regulation by symbiont of induced systemic resistance in host","type":"related"},{"name":"up-regulation by symbiont of induced systemic resistance in host","type":"related"},{"name":"upregulation by symbiont of induced systemic resistance in host","type":"related"}],"termid":"GO:0052103"}


id: PBO:0054247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1629","termid":"PBO:0054247"}


id: GO:0072639
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of interleukin-33 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:mah","PMID:29778524","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"interleukin-33 production","secondary_identifiers":["GO:0150126","GO:0072640"],"synonyms":[{"name":"C9orf26 production","type":"narrow"},{"name":"IL-33 production","type":"exact"},{"name":"IL1F11 production","type":"narrow"},{"name":"IL33 production","type":"exact"},{"name":"NF-HEV production","type":"exact"},{"name":"interleukin-33 biosynthetic process","type":"narrow"},{"name":"interleukin-33 secretion","type":"narrow"}],"termid":"GO:0072639"}


id: GO:0043425
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a basic Helix-Loop-Helix (bHLH) superfamily of transcription factors, important regulatory components in transcriptional networks of many developmental pathways.","definition_xrefs":["PMID:9144210"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-binding transcription factor binding","termid":"GO:0140297"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"bHLH transcription factor binding","termid":"GO:0043425"}


id: PBO:0089510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF5102 family conserved fungal protein, associated with clathrin coated vesicles","termid":"PBO:0089510"}


id: GO:1900463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of cellular response to alkalinity by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:dgf","GOC:TermGenie","PMID:17023428","PMID:12509465"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of cellular response to alkaline pH by negative regulation of transcription from RNA polymerase II promoter (obsolete GO:1900463)","synonyms":[{"name":"negative regulation of cellular response to alkalinity by negative regulation of transcription from RNA polymerase II promoter","type":"broad"},{"name":"negative regulation of cellular response to basic pH by negative regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1900463"}


id: MONDO:0000369
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An extrapulmonary tuberculosis that is located in gastrointestinal tract, located in peritoneum, located in omentum, located in mesentery, located in liver, located in spleen or located in pancreas.","definition_xrefs":["DOID:0050599"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrapulmonary tuberculosis","termid":"MONDO:0000368"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abdominal tuberculosis","secondary_identifiers":["UMLS:C0740652","ICD9:014.80","MEDGEN:677012","SCTID:447330002"],"synonyms":[{"name":"tuberculosis of abdomen","type":"exact"}],"termid":"MONDO:0000369","xrefs":{"Monarch":{"xref_id":"0000369"}}}


id: PBO:0056077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LY6G6F-LY6G6D readthrough","termid":"PBO:0056077"}


id: GO:0035565
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the size of a pronephric kidney.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of kidney size","termid":"GO:0035564"},{"relation_name":"part_of","term_name":"pronephros morphogenesis","termid":"GO:0072114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of pronephros size","synonyms":[{"name":"regulation of pronephric kidney size","type":"exact"}],"termid":"GO:0035565"}


id: MONDO:0012419
data:
  {"annotated_genes":["SJAG_00737","SJAG_03258"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89055,89056],"is_not":false,"summary":null,"term":"MONDO:0012419"}]},"cv_name":"mondo","definition":"Any age-related macular degeneration in which the cause of the disease is a mutation in the HTRA1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"age-related macular degeneration","termid":"MONDO:0005150"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00737":null,"SJAG_03258":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"age related macular degeneration 7","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C565718","DOID:0110019","MEDGEN:347554","OMIM:610149","UMLS:C1857813"],"synonyms":[{"name":"ARMD7","type":"exact"},{"name":"HTRA1 age-related macular degeneration","type":"exact"},{"name":"age related macular degeneration type 7","type":"exact"},{"name":"age-related macular degeneration caused by mutation in HTRA1","type":"exact"},{"name":"macular Degeneration, age-related, neovascular type, susceptibility to","type":"related"},{"name":"macular Degeneration, age-related, type 7","type":"exact"},{"name":"macular Degeneration, age-related, wet type, susceptibility to","type":"related"},{"name":"macular degeneration, age-related, 7","type":"related"},{"name":"macular degeneration, age-related, neovascular type","type":"exact"}],"termid":"MONDO:0012419","terms_by_termid":{"MONDO:0012419":null},"xrefs":{"Monarch":{"xref_id":"0012419"}}}


id: GO:0051580
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of a neurotransmitter into a neuron or glial cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neurotransmitter transport","termid":"GO:0051588"},{"relation_name":"regulates","term_name":"neurotransmitter uptake","termid":"GO:0001504"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of neurotransmitter uptake","synonyms":[{"name":"regulation of neurotransmitter import","type":"exact"},{"name":"regulation of neurotransmitter reuptake","type":"exact"}],"termid":"GO:0051580"}


id: PBO:0047243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 236 member C","termid":"PBO:0047243"}


id: FYPO:0000773
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which pre-replicative complex assembly is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA replication","termid":"FYPO:0000217"},{"relation_name":"is_a","term_name":"abnormal protein-containing complex assembly","termid":"FYPO:0000447"},{"relation_name":"is_a","term_name":"abnormal cell cycle process","termid":"FYPO:0002734"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000631"],"is_obsolete":false,"name":"abnormal pre-replicative complex assembly","synonyms":[{"name":"abnormal pre-RC assembly","type":"exact"},{"name":"abnormal pre-replicative complex assembly during mitotic cell cycle","type":"related"},{"name":"abnormal pre-replicative complex assembly during vegetative growth","type":"exact"},{"name":"abnormal pre-replicative complex formation","type":"exact"}],"termid":"FYPO:0000773"}


id: GO:0022023
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into a radial glial cell in the forebrain.","definition_xrefs":["GOC:cls","GOC:dgh","GOC:jid","GOC:dph","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell fate commitment","termid":"GO:0021781"},{"relation_name":"is_a","term_name":"commitment of multipotent stem cells to neuronal lineage in forebrain","termid":"GO:0021898"},{"relation_name":"part_of","term_name":"forebrain radial glial cell differentiation","termid":"GO:0021861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"radial glial cell fate commitment in forebrain","termid":"GO:0022023"}


id: PBO:0058343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4716","termid":"PBO:0058343"}


id: MONDO:0018687
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, milder form of amyotrophic lateral sclerosis. It is characterized by a slowly progressive clinical course. Signs and symptoms include muscle weakness, atrophy, and fasciculation.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amyotrophic lateral sclerosis","termid":"MONDO:0004976"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"progressive muscular atrophy","secondary_identifiers":["Orphanet:454706","icd11.foundation:1282359533","UMLS:C4082951","ICD9:335.21","SCTID:88923002","MESH:D009134","DOID:318","NCIT:C85027","GARD:21891","MEDGEN:906831"],"synonyms":[{"name":"PMA","type":"exact"},{"name":"progressive spinal muscular atrophy","type":"exact"},{"name":"pure progressive muscular atrophy","type":"related"}],"termid":"MONDO:0018687","xrefs":{"Monarch":{"xref_id":"0018687"}}}


id: GO:0016812
data:
  {"annotated_genes":["SJAG_00444","SJAG_04300","SJAG_01995"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78768],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017168"},{"annotations":[73283],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004151"},{"annotations":[64390],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033971"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amide.","definition_xrefs":["EC:3.5.2.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds","termid":"GO:0016810"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00444":null,"SJAG_01995":null,"SJAG_04300":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787","GO:0016810"],"is_obsolete":false,"name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-70906"],"termid":"GO:0016812","terms_by_termid":{"GO:0004151":null,"GO:0017168":null,"GO:0033971":null}}


id: PBO:0049832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"haloacid dehalogenase like hydrolase domain containing 3","termid":"PBO:0049832"}


id: GO:0034511
data:
  {"annotated_genes":["SJAG_03846","SJAG_03028","SJAG_00344","SJAG_04224","SJAG_00945"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[67424,76099,77550,79655,79771],"is_not":false,"summary":null,"term":"GO:0034511"}]},"cv_name":"molecular_function","definition":"Binding to a U3 small nucleolar RNA.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snoRNA binding","termid":"GO:0030515"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00344":null,"SJAG_00945":null,"SJAG_03028":null,"SJAG_03846":null,"SJAG_04224":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003723","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"U3 snoRNA binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"termid":"GO:0034511","terms_by_termid":{"GO:0034511":null}}


id: GO:0046794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a virus, or part of a virus, into, out of, or within a host cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"transport of virus","synonyms":[{"name":"viral transport","type":"exact"},{"name":"virion transport","type":"narrow"}],"termid":"GO:0046794"}


id: PBO:0088549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human HID1 ortholog 1, possible Golgi protein (by similarity)","termid":"PBO:0088549"}


id: GO:1901177
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of lycopene.","definition_xrefs":["UniPathway:UPA00803","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carotene biosynthetic process","termid":"GO:0016120"},{"relation_name":"is_a","term_name":"lycopene metabolic process","termid":"GO:1901175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"lycopene biosynthetic process","synonyms":[{"name":"lycopene anabolism","type":"exact"},{"name":"lycopene biosynthesis","type":"exact"},{"name":"lycopene formation","type":"exact"},{"name":"lycopene synthesis","type":"exact"}],"termid":"GO:1901177"}


id: PBO:0077531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 244","termid":"PBO:0077531"}


id: MONDO:0034968
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare ocular motility/alignment disorder (obsolete MONDO:0034968)","secondary_identifiers":["Orphanet:519355"],"termid":"MONDO:0034968","xrefs":{"Monarch":{"xref_id":"0034968"}}}


id: PBO:0031449
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_pre-replicative_complex_assembly","termid":"PBO:0031449"}


id: PBO:0055877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 3C","termid":"PBO:0055877"}


id: PBO:0003654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-SWIM","termid":"PBO:0003654"}


id: PBO:0046921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 32 member E, pseudogene","termid":"PBO:0046921"}


id: PBO:0034241
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-results_in_structural_organization_of","termid":"PBO:0034241"}


id: PBO:0114521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3-H4 chaperone, CAF assembly factor (CAF-1) complex WD repeat subunit C, Pcf3","termid":"PBO:0114521"}


id: MONDO:1011631
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stringhalt, non-human animal","secondary_identifiers":["OMIA:000950"],"termid":"MONDO:1011631","xrefs":{"Monarch":{"xref_id":"1011631"}}}


id: GO:1901434
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of toluene catabolic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catabolic process","termid":"GO:0009894"},{"relation_name":"is_a","term_name":"regulation of toluene metabolic process","termid":"GO:1901437"},{"relation_name":"regulates","term_name":"toluene catabolic process","termid":"GO:0042203"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of toluene catabolic process","synonyms":[{"name":"regulation of toluene breakdown","type":"exact"},{"name":"regulation of toluene catabolism","type":"exact"},{"name":"regulation of toluene degradation","type":"exact"}],"termid":"GO:1901434"}


id: MONDO:0958269
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory system disorder","termid":"MONDO:0005087"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isolated left bronchial isomerism","secondary_identifiers":["Orphanet:649029","MEDGEN:1853146","UMLS:C5816741"],"termid":"MONDO:0958269","xrefs":{"Monarch":{"xref_id":"0958269"}}}


id: MONDO:0010376
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Brooks-Wisniewski-brown syndrome (obsolete MONDO:0010376)","termid":"MONDO:0010376","xrefs":{"Monarch":{"xref_id":"0010376"}}}


id: PBO:0073271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 7 pseudogene 15","termid":"PBO:0073271"}


id: PBO:0074183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC38A4 antisense RNA 1","termid":"PBO:0074183"}


id: PBO:0083748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential component of the TIM23 complex; tethers the import motor and regulatory factors (PAM complex) to the translocation channel (Tim23p-Tim17p core complex); TIM23 complex is short for the translocase of the inner mitochondrial membrane","termid":"PBO:0083748"}


id: GO:0008881
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-glutamate = D-glutamate.","definition_xrefs":["RHEA:12813","EC:5.1.1.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid racemase activity","termid":"GO:0047661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"glutamate racemase activity","secondary_identifiers":["KEGG_REACTION:R00260","MetaCyc:GLUTRACE-RXN"],"termid":"GO:0008881"}


id: MONDO:0017986
data:
  {"annotated_genes":["SJAG_00326","SJAG_00702"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87781],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008972"},{"annotations":[87625],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014743"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited lipid metabolism disorder","termid":"MONDO:0002525"},{"relation_name":"is_a","term_name":"peroxisomal single enzyme/protein defect","termid":"MONDO:0100257"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00326":null,"SJAG_00702":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0019053"}],"interesting_parent_ids":["MONDO:0019053","MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"disorder of plasmalogens biosynthesis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:3276","NANDO:1200770","GARD:18790","UMLS:C5681192","MEDGEN:1842510"],"synonyms":[{"name":"disorder of plasmalogens biosynthesis","type":"exact"}],"termid":"MONDO:0017986","terms_by_termid":{"MONDO:0008972":null,"MONDO:0014743":null},"xrefs":{"Monarch":{"xref_id":"0017986"}}}


id: PBO:0065921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB interacting factor","termid":"PBO:0065921"}


id: FYPO:0000639
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which septum assembly begins later than normal.","definition_xrefs":["PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal septum assembly","termid":"FYPO:0000117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0000032","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"delayed onset of septum assembly","synonyms":[{"name":"delayed onset of division septum assembly","type":"exact"},{"name":"delayed onset of division septum formation involved in mitotic cytokinesis","type":"exact"},{"name":"delayed onset of septation","type":"broad"},{"name":"delayed onset of septum assembly during mitotic cell cycle","type":"related"},{"name":"delayed onset of septum assembly during vegetative growth","type":"exact"},{"name":"delayed onset of septum formation","type":"exact"},{"name":"delayed septum assembly","type":"exact"}],"termid":"FYPO:0000639"}


id: GO:0075089
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of the symbiont G protein-coupled receptor signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation by host of symbiont G protein-coupled receptor signal transduction (obsolete GO:0075089)","synonyms":[{"name":"negative regulation by host of symbiont G-protein coupled receptor protein signal transduction","type":"exact"}],"termid":"GO:0075089"}


id: PBO:0048507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth differentiation factor 7","termid":"PBO:0048507"}


id: PBO:0065195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA processing factor 6","termid":"PBO:0065195"}


id: PBO:0030906
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_RNA_level_during_vegetative_growth","termid":"PBO:0030906"}


id: PBO:0082481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Carboxy-terminal domain (CTD) phosphatase; essential for dephosphorylation of the repeated C-terminal domain of the RNA polymerase II large subunit (Rpo21p); relocalizes to the cytosol in response to hypoxia","termid":"PBO:0082481"}


id: GO:0042928
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which ferrichrome is transported into the cell by specific cell surface receptors. Ferrichromes are any of a group of growth-promoting Fe(III) chelates formed by various genera of microfungi. They are homodetic cyclic hexapeptides made up of a tripeptide of glycine (or other small neutral amino acids) and a tripeptide of an N'acyl-N4-hydroxy-L-ornithine.","definition_xrefs":["PMID:23192658","ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ferric-hydroxamate import into cell","termid":"GO:0015687"},{"relation_name":"is_a","term_name":"amide transport","termid":"GO:0042886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098771"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0098771","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"ferrichrome import into cell","synonyms":[{"name":"ferrichrome transport","type":"broad"}],"termid":"GO:0042928"}


id: GO:1904626
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of glycine secretion, neurotransmission.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:22988142"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of neurotransmitter secretion","termid":"GO:0001956"},{"relation_name":"is_a","term_name":"positive regulation of organic acid transport","termid":"GO:0032892"},{"relation_name":"is_a","term_name":"positive regulation of amino acid transport","termid":"GO:0051957"},{"relation_name":"is_a","term_name":"positive regulation of synaptic transmission, glycinergic","termid":"GO:0060094"},{"relation_name":"is_a","term_name":"regulation of glycine secretion, neurotransmission","termid":"GO:1904624"},{"relation_name":"positively_regulates","term_name":"glycine secretion, neurotransmission","termid":"GO:0061537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of glycine secretion, neurotransmission","synonyms":[{"name":"activation of glycine secretion, neurotransmission","type":"narrow"},{"name":"up regulation of glycine secretion, neurotransmission","type":"exact"},{"name":"up-regulation of glycine secretion, neurotransmission","type":"exact"},{"name":"upregulation of glycine secretion, neurotransmission","type":"exact"}],"termid":"GO:1904626"}


id: MONDO:0019722
data:
  {"annotated_genes":["SJAG_00118","SJAG_01143","SJAG_04621","SJAG_04001"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86830],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011303"},{"annotations":[87673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013589"},{"annotations":[88628,88629],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014462"}]},"cv_name":"mondo","definition":"A disease involving the renal glomerulus.","definition_xrefs":["MONDO:patterns/location_top"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney disorder","termid":"MONDO:0005240"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00118":null,"SJAG_01143":null,"SJAG_04001":null,"SJAG_04621":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"glomerular disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:197679002","EFO:1002049","ICD10CM:N00-N08","NCIT:C120887","Orphanet:93548","GTR:AN0966176"],"synonyms":[{"name":"disease of renal glomerulus","type":"exact"},{"name":"disease or disorder of renal glomerulus","type":"exact"},{"name":"disorder of renal glomerulus","type":"exact"},{"name":"glomerulopathies","type":"related"},{"name":"glomerulopathy","type":"exact"},{"name":"renal glomerulus disease","type":"exact"},{"name":"renal glomerulus disease or disorder","type":"exact"}],"termid":"MONDO:0019722","terms_by_termid":{"MONDO:0011303":null,"MONDO:0013589":null,"MONDO:0014462":null},"xrefs":{"Monarch":{"xref_id":"0019722"}}}


id: MONDO:0009890
data:
  {"annotated_genes":["SJAG_00334"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89018],"is_not":false,"summary":null,"term":"MONDO:0009890"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"ALG9-congenital disorder of glycosylation","termid":"MONDO:0012117"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00334":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0024322"],"is_obsolete":false,"name":"Gillessen-Kaesbach-Nishimura syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:376653","MESH:C564881","OMIM:263210","UMLS:C1849762","GARD:15223"],"synonyms":[{"name":"GIKANIS","type":"related"},{"name":"Gillessen-Kaesbach-Nishimura syndrome","type":"exact"},{"name":"polycystic kidney disease, Potter type I, with microbrachycephaly, hypertelorism, and brachymelia","type":"related"},{"name":"polycystic kidney disease, autosomal recessive, with microbrachycephaly, hypertelorism, and brachymelia","type":"related"}],"termid":"MONDO:0009890","terms_by_termid":{"MONDO:0009890":null},"xrefs":{"Monarch":{"xref_id":"0009890"}}}


id: PBO:0076869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 15, meiosis and synapsis associated","termid":"PBO:0076869"}


id: GO:0072666
data:
  {"annotated_genes":["SJAG_04600","SJAG_01981","SJAG_02117","SJAG_03783","SJAG_03860","SJAG_03970","SJAG_00204","SJAG_03250","SJAG_02912","SJAG_02584","SJAG_03892","SJAG_05303","SJAG_01527","SJAG_00416","SJAG_01360","SJAG_00181","SJAG_01229","SJAG_02371","SJAG_03976","SJAG_03385","SJAG_03756","SJAG_16459","SJAG_00380","SJAG_04489","SJAG_04936","SJAG_01242","SJAG_01367","SJAG_00821","SJAG_00208","SJAG_04912","SJAG_04552","SJAG_00108","SJAG_05210","SJAG_01586","SJAG_01281","SJAG_01488","SJAG_04349","SJAG_04024","SJAG_01088"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89776,64850,70849,65789,89889,93274,93413,107561,115145,116289,69229,64436],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120113"},{"annotations":[92773],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044395"},{"annotations":[75674,78875,78976,77419,79403,82078,72916,79859,98332,74427],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006623"},{"annotations":[72604,79895,93277,79429,99741,75184,72774,89892,108374,75205,102681,93416,73807,111198,73843,116548,89723,97746,80166],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043328"}]},"cv_name":"biological_process","definition":"The directed movement of a protein to a specific location in a vacuole.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of protein localization to organelle","termid":"GO:0072594"}],"gene_count":39,"genes_by_uniquename":{"SJAG_00108":null,"SJAG_00181":null,"SJAG_00204":null,"SJAG_00208":null,"SJAG_00380":null,"SJAG_00416":null,"SJAG_00821":null,"SJAG_01088":null,"SJAG_01229":null,"SJAG_01242":null,"SJAG_01281":null,"SJAG_01360":null,"SJAG_01367":null,"SJAG_01488":null,"SJAG_01527":null,"SJAG_01586":null,"SJAG_01981":null,"SJAG_02117":null,"SJAG_02371":null,"SJAG_02584":null,"SJAG_02912":null,"SJAG_03250":null,"SJAG_03385":null,"SJAG_03756":null,"SJAG_03783":null,"SJAG_03860":null,"SJAG_03892":null,"SJAG_03970":null,"SJAG_03976":null,"SJAG_04024":null,"SJAG_04349":null,"SJAG_04489":null,"SJAG_04552":null,"SJAG_04600":null,"SJAG_04912":null,"SJAG_04936":null,"SJAG_05210":null,"SJAG_05303":null,"SJAG_16459":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"establishment of protein localization to vacuole","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"establishment of protein localisation to vacuole","type":"exact"}],"termid":"GO:0072666","terms_by_termid":{"GO:0006623":null,"GO:0043328":null,"GO:0044395":null,"GO:0120113":null}}


id: MONDO:0011035
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A RASopathy and a variant of neurofibromatosis type 1 (NF1) characterized by the combination of features of NF1, such as cafe-au-lait spots, iris Lisch nodules, axillary and inguinal freckling, optic nerve glioma and multiple neurofibromas; and Noonan syndrome (NS), such as short stature, typical facial features (hypertelorism, ptosis, downslanting palpebral fissures, low-set posteriorly rotated ears with a thickened helix, and a broad forehead), congenital heart defects and unusual pectus deformity. As these three entities have significant phenotypic overlap, molecular genetic testing is often necessary for a correct diagnosis (such as when cafC)-au-lait spots are present in patients diagnosed with NS).","definition_xrefs":["Orphanet:638"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hyperpigmentation of the skin","termid":"MONDO:0019289"},{"relation_name":"excluded_subClassOf","term_name":"obsolete rare skin tumor or hamartoma (obsolete MONDO:0019300)","termid":"MONDO:0019300"},{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"},{"relation_name":"is_a","term_name":"RASopathy","termid":"MONDO:0021060"},{"relation_name":"is_a","term_name":"neurofibromatosis","termid":"MONDO:0021061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"neurofibromatosis-Noonan syndrome","secondary_identifiers":["MEDGEN:419089","DOID:0111683","icd11.foundation:679913930","MESH:C537393","MESH:D009456","UMLS:C2931482","GARD:372","SCTID:715344006","OMIM:601321"],"synonyms":[{"name":"NFNS","type":"exact"},{"name":"Noonan neurofibromatosis syndrome","type":"related"},{"name":"Noonan-neurofibromatosis syndrome","type":"related"},{"name":"neurofibromatosis type 1-Noonan syndrome","type":"exact"},{"name":"neurofibromatosis with Noonan phenotype","type":"related"},{"name":"neurofibromatosis-Noonan syndrome","type":"exact"}],"termid":"MONDO:0011035","xrefs":{"Monarch":{"xref_id":"0011035"}}}


id: PBO:0036112
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K4_acetylation_during_vegetative_growth","termid":"PBO:0036112"}


id: MONDO:0002992
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete juvenile xanthogranuloma (obsolete MONDO:0002992)","termid":"MONDO:0002992","xrefs":{"Monarch":{"xref_id":"0002992"}}}


id: GO:0004658
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA.","definition_xrefs":["EC:6.4.1.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA carboxylase activity","termid":"GO:0016421"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016874","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"propionyl-CoA carboxylase activity","secondary_identifiers":["Reactome:R-HSA-71031","RHEA:23720","MetaCyc:PROPIONYL-COA-CARBOXY-RXN"],"synonyms":[{"name":"PCCase activity","type":"related"},{"name":"propanoyl-CoA:carbon-dioxide ligase (ADP-forming)","type":"related"},{"name":"propionyl coenzyme A carboxylase activity","type":"related"}],"termid":"GO:0004658"}


id: PBO:0072410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S27 pseudogene 15","termid":"PBO:0072410"}


id: PBO:0087252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine/threonine protein kinase; inhibits pheromone induced signaling downstream of MAPK, possibly at the level of the Ste12p transcription factor","termid":"PBO:0087252"}


id: FYPO:0007178
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the medial cortex of a cell is abolished during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to medial cortex during vegetative growth","termid":"FYPO:0002555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to medial cortex during mitosis","synonyms":[{"name":"abolished protein localisation to medial cortex during mitosis","type":"exact"},{"name":"abolished protein localization to medial cortex during mitosis during vegetative growth","type":"exact"},{"name":"abolished protein localization to medial cortex during mitotic M phase","type":"related"},{"name":"abolished protein localization to medial cortex during mitotic nuclear division","type":"exact"},{"name":"abolished protein localization to medial ring during mitosis","type":"exact"},{"name":"protein localization to medial cortex abolished during mitosis","type":"exact"}],"termid":"FYPO:0007178"}


id: PBO:0000672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"queuine tRNA-ribosyltransferase (predicted)","termid":"PBO:0000672"}


id: MONDO:0012723
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Leber congenital amaurosis in which the cause of the disease is a mutation in the CEP290 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Leber congenital amaurosis","termid":"MONDO:0018998"},{"relation_name":"is_a","term_name":"retinal ciliopathy","termid":"MONDO:0022410"},{"relation_name":"is_a","term_name":"CEP290-related ciliopathy","termid":"MONDO:0100451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005328"],"is_obsolete":false,"name":"Leber congenital amaurosis 10","secondary_identifiers":["ICD10CM:H35.5","MEDGEN:346672","UMLS:C1857821","OMIM:611755","DOID:0110291","GARD:10487","MESH:C565720"],"synonyms":[{"name":"CEP290 Leber congenital amaurosis","type":"exact"},{"name":"LCA10","type":"exact"},{"name":"Leber congenital amaurosis 10","type":"exact"},{"name":"Leber congenital amaurosis caused by mutation in CEP290","type":"exact"},{"name":"Leber congenital amaurosis type 10","type":"exact"},{"name":"amaurosis congenita of Leber, type 10","type":"related"}],"termid":"MONDO:0012723","xrefs":{"Monarch":{"xref_id":"0012723"}}}


id: PBO:0034097
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-is_preventative_for_condition","termid":"PBO:0034097"}


id: GO:0055094
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipoprotein particle stimulus.","definition_xrefs":["GOC:rl","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to endogenous stimulus","termid":"GO:0009719"},{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to lipoprotein particle","synonyms":[{"name":"response to lipoprotein particle stimulus","type":"exact"}],"termid":"GO:0055094"}


id: PR:Q09924
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A translation initiation factor eIF-2B subunit delta that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01763","PANTHER:PTHR10233:SF14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF-2B subunit delta (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC21E11.06","secondary_identifiers":["UniProtKB:Q09924"],"synonyms":[{"name":"Spom972h-EIF2B4","type":"exact"},{"name":"eIF-2B GDP-GTP exchange factor subunit delta (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09924"}


id: GO:2000684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to X-ray.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"is_a","term_name":"regulation of cellular response to X-ray","termid":"GO:2000683"},{"relation_name":"negatively_regulates","term_name":"cellular response to X-ray","termid":"GO:0071481"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cellular response to X-ray","synonyms":[{"name":"negative regulation of cellular response to X-ray radiation stimulus","type":"exact"}],"termid":"GO:2000684"}


id: PBO:0053236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LHFPL tetraspan subfamily member 2","termid":"PBO:0053236"}


id: MONDO:0021294
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A in situ carcinoma that involves the cardia of stomach.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gastric cardia carcinoma","termid":"MONDO:0003834"},{"relation_name":"is_a","term_name":"stomach carcinoma in situ","termid":"MONDO:0004716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"carcinoma in situ of gastric cardia","secondary_identifiers":["NCIT:C4428","SCTID:92560002","MEDGEN:91052","UMLS:C0345795"],"synonyms":[{"name":"carcinoma in situ of cardia of stomach","type":"exact"},{"name":"carcinoma in situ of the cardia of the stomach","type":"exact"},{"name":"carcinoma in situ of the gastric cardia","type":"exact"},{"name":"cardia of stomach carcinoma in situ","type":"exact"},{"name":"cardia of stomach in situ carcinoma","type":"exact"},{"name":"gastric cardia carcinoma in situ","type":"exact"},{"name":"gastric cardia carcinoma in situ aJCC v6 and v7","type":"exact"},{"name":"stage 0 cardia of stomach carcinoma","type":"exact"},{"name":"stage 0 gastric cardia carcinoma","type":"exact"}],"termid":"MONDO:0021294","xrefs":{"Monarch":{"xref_id":"0021294"}}}


id: MONDO:0006843
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hole in the macula of the retina.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinal disorder","termid":"MONDO:0005283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"macular holes","secondary_identifiers":["DOID:7633","NCIT:C34795","SCTID:232006002","UMLS:C0024441","MESH:D012167","EFO:1001028","MEDGEN:6176"],"synonyms":[{"name":"macular hole","type":"exact"}],"termid":"MONDO:0006843","xrefs":{"Monarch":{"xref_id":"0006843"}}}


id: PBO:0066162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome binding factor A","termid":"PBO:0066162"}


id: PBO:0111940
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin Kip2 subfamily","termid":"PBO:0111940"}


id: PBO:0001362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA kinase/phosphatase Pnk1","termid":"PBO:0001362"}


id: PBO:0076620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin folding cofactor C","termid":"PBO:0076620"}


id: GO:1900330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of methane biosynthetic process from trimethylamine.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of amine metabolic process","termid":"GO:0033238"},{"relation_name":"is_a","term_name":"regulation of cellular respiration","termid":"GO:0043457"},{"relation_name":"is_a","term_name":"regulation of alkane biosynthetic process","termid":"GO:1901577"},{"relation_name":"regulates","term_name":"methane biosynthetic process from trimethylamine","termid":"GO:2001130"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"regulation of methane biosynthetic process from trimethylamine","termid":"GO:1900330"}


id: GO:0015062
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete violet-sensitive opsin (obsolete GO:0015062)","synonyms":[{"name":"violet-sensitive opsin","type":"exact"}],"termid":"GO:0015062"}


id: GO:0097524
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A plasma membrane that is part of a sperm cell.","definition_xrefs":["GOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane","termid":"GO:0005886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"sperm plasma membrane","termid":"GO:0097524"}


id: PBO:0070194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 116 pseudogene","termid":"PBO:0070194"}


id: _global:removed_by
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD_extension_relations","definition":"Identifies a gene product that removes the modification.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"removed_by","termid":"_global:removed_by"}


id: MONDO:0009681
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Ullrich congenital muscular dystrophy","termid":"MONDO:0000355"},{"relation_name":"is_a","term_name":"collagen 6-related myopathy","termid":"MONDO:0100225"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0002320"],"is_obsolete":false,"name":"Ullrich congenital muscular dystrophy 1A","secondary_identifiers":["MEDGEN:98046","DOID:0060946","OMIM:254090","UMLS:C0410179","NANDO:1200215"],"synonyms":[{"name":"UCMD1","type":"related"},{"name":"Ullrich Scleroatonic muscular dystrophy","type":"related"},{"name":"Ullrich congenital muscular dystrophy","type":"related"},{"name":"Ullrich congenital muscular dystrophy 1","type":"exact"},{"name":"Ullrich congenital muscular dystrophy type 1","type":"broad"},{"name":"Ullrich disease","type":"related"},{"name":"muscular dystrophy, Scleroatonic","type":"related"}],"termid":"MONDO:0009681","xrefs":{"Monarch":{"xref_id":"0009681"}}}


id: PBO:0038344
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-co-occurs","termid":"PBO:0038344"}


id: GO:0060289
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a compartment boundary. A compartment boundary is a lineage restriction boundary within a developing tissue which does not correspond to some morphological barrier.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue homeostasis","termid":"GO:0001894"},{"relation_name":"part_of","term_name":"compartment pattern specification","termid":"GO:0007386"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"compartment boundary maintenance","termid":"GO:0060289"}


id: MONDO:0011672
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Persistent polyclonal B-cell lymphocytosis (PPBL) is a rare, generally benign, lymphoproliferative hematological disease characterized by: chronic, stable, persistent, polyclonal lymphocytosis of memory B-cell origin, the presence of binucleated lymphocytes in the peripheral blood, and a polyclonal increase in serum immunoglobulin M (IgM). Patients are most frequently asymptomatic or may present with mild splenomegaly.","definition_xrefs":["Orphanet:300324"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"lymphoid hemopathy","termid":"MONDO:0015757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"persistent polyclonal B-cell lymphocytosis","secondary_identifiers":["MEDGEN:341117","UMLS:C1847973","MESH:C564707","SCTID:763864008","GARD:17366","OMIM:606445"],"synonyms":[{"name":"PPBL","type":"exact"},{"name":"persistent polyclonal B-cell lymphocytosis","type":"exact"},{"name":"persistent polyclonal B-cell lymphocytosis with binucleated lymphocytes","type":"exact"}],"termid":"MONDO:0011672","xrefs":{"Monarch":{"xref_id":"0011672"}}}


id: PBO:0039536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 36B","termid":"PBO:0039536"}


id: GO:0008962
data:
  {"annotated_genes":["SJAG_03700"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[60046],"is_not":false,"summary":null,"term":"GO:0008962"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: phosphatidylglycerophosphate + H2O = phosphatidylglycerol + phosphate.","definition_xrefs":["PMID:4292860"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03700":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"phosphatidylglycerophosphatase activity","references_by_uniquename":{"GO_REF:0000002":null},"secondary_identifiers":["MetaCyc:PGPPHOSPHA-RXN","EC:3.1.3.27","Reactome:R-HSA-1483197","RHEA:16725"],"synonyms":[{"name":"PGP phosphatase activity","type":"related"},{"name":"phosphatidylglycerol phosphatase activity","type":"related"},{"name":"phosphatidylglycerol phosphate phosphatase activity","type":"related"},{"name":"phosphatidylglycerophosphate phosphohydrolase activity","type":"related"}],"termid":"GO:0008962","terms_by_termid":{"GO:0008962":null}}


id: PBO:0081331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 132","termid":"PBO:0081331"}


id: MOD:00560
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Other","definition_xrefs":["Unimod:209"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acrolein addition +112","synonyms":[{"name":"Acrolein addition +112","type":"related"},{"name":"Delta:H(8)C(6)O(2)","type":"related"}],"termid":"MOD:00560"}


id: PBO:0047045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 107 member B","termid":"PBO:0047045"}


id: PBO:0081586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 513","termid":"PBO:0081586"}


id: FYPO:0005372
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which circular minichromosomes are lost at a higher frequency than normal during the vegetative growth phase of the life cycle. Minichromosome loss occurs when one or both daughter cells do not inherit copies of a minichromosome from the mother cell, and may result from failure of minichromosome replication or segregation.","definition_xrefs":["PMID:11226171","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased minichromosome loss during vegetative growth","termid":"FYPO:0001840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased circular minichromosome loss during vegetative growth","synonyms":[{"name":"increased circular minichromosome loss during mitotic cell cycle","type":"related"},{"name":"mitotic circular minichromosome maintenance defect","type":"related"}],"termid":"FYPO:0005372"}


id: SO:0001123
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif of six or seven consecutive residues that contains two H-bonds.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_secondary_structure","termid":"SO:0001078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"schellmann_loop","secondary_identifiers":["BS:00226"],"synonyms":[{"name":"paperclip","type":"related"},{"name":"paperclip loop","type":"related"},{"name":"schellmann loop","type":"exact"}],"termid":"SO:0001123"}


id: MONDO:0018999
data:
  {"annotated_genes":["SJAG_03162"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88704],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007620"},{"annotations":[87158],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009515"}]},"cv_name":"mondo","definition":"LCAT (lecithin-cholesterol acyltransferase) deficiency is a rare lipoprotein metabolism disorder characterized clinically by corneal opacities, and sometimes renal failure and hemolytic anemia, and biochemically by severely reduced HDL cholesterol.","definition_xrefs":["Orphanet:650"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"is_a","term_name":"hypoalphalipoproteinemia","termid":"MONDO:0017773"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03162":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"LCAT deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1830326","GARD:16539","SCTID:49227001","UMLS:C5779633","NANDO:1200852"],"synonyms":[{"name":"lecithin-cholesterol acyltransferase deficiency","type":"exact"}],"termid":"MONDO:0018999","terms_by_termid":{"MONDO:0007620":null,"MONDO:0009515":null},"xrefs":{"Monarch":{"xref_id":"0018999"}}}


id: MONDO:0009368
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Ochoa syndrome","termid":"MONDO:0000463"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"urofacial syndrome type 1","secondary_identifiers":["OMIM:236730"],"synonyms":[{"name":"Ochoa syndrome","type":"related"},{"name":"UFS1","type":"related"},{"name":"facial palsy, partial, with urinary abnormalities","type":"related"},{"name":"hydronephrosis with peculiar Facial expression","type":"related"},{"name":"inverted smile and occult neuropathic bladder","type":"related"},{"name":"urofacial syndrome","type":"related"},{"name":"urofacial syndrome 1","type":"related"},{"name":"urofacial syndrome type 1","type":"exact"}],"termid":"MONDO:0009368","xrefs":{"Monarch":{"xref_id":"0009368"}}}


id: PBO:0069276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 532, pseudogene","termid":"PBO:0069276"}


id: PBO:0089325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Utp3","termid":"PBO:0089325"}


id: PBO:0042675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEA cell adhesion molecule pseudogene 9","termid":"PBO:0042675"}


id: GO:0060059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of the retina is generated and organized in a camera-type eye during the embryonic life stage.","definition_xrefs":["GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"retina morphogenesis in camera-type eye","termid":"GO:0060042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic retina morphogenesis in camera-type eye","termid":"GO:0060059"}


id: GO:0031549
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of signaling via the brain-derived neurotrophic factor receptor signaling pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"regulation of brain-derived neurotrophic factor receptor signaling pathway","termid":"GO:0031548"},{"relation_name":"negatively_regulates","term_name":"brain-derived neurotrophic factor receptor signaling pathway","termid":"GO:0031547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of brain-derived neurotrophic factor receptor signaling pathway","synonyms":[{"name":"down regulation of brain-derived neurotrophic factor receptor signaling pathway","type":"exact"},{"name":"down-regulation of brain-derived neurotrophic factor receptor signaling pathway","type":"exact"},{"name":"downregulation of brain-derived neurotrophic factor receptor signaling pathway","type":"exact"},{"name":"inhibition of brain-derived neurotrophic factor receptor signaling pathway","type":"narrow"},{"name":"negative regulation of BDNF receptor signaling pathway","type":"exact"},{"name":"negative regulation of BDNF receptor signalling pathway","type":"exact"},{"name":"negative regulation of brain-derived neurotrophic factor receptor signalling pathway","type":"exact"}],"termid":"GO:0031549"}


id: MONDO:0005392
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital or acquired spinal deformity characterized by lateral curvature of the spine.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disease of bone structure","termid":"MONDO:0000836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scoliosis","secondary_identifiers":["DOID:0060249","ICD10CM:M41","EFO:0004273","NCIT:C78603","icd11.foundation:1925604007","SCTID:298382003","MEDGEN:11348","UMLS:C0036439","ICD9:737.43","HP:0002650","MESH:D012600"],"termid":"MONDO:0005392","xrefs":{"Monarch":{"xref_id":"0005392"}}}


id: GO:0035868
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphav-beta3 integrin complex bound to high mobility group box 1 protein.","definition_xrefs":["GOC:BHF","GOC:ebc","PMID:20826760"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"alphav-beta3 integrin-HMGB1 complex","synonyms":[{"name":"alphav-beta3 integrin-high mobility group box 1 complex","type":"exact"}],"termid":"GO:0035868"}


id: _global:has_output_o_product_of
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"This is the combination of the has_output relation with the gene_product_of relation.","definition_xrefs":["GOC:mtg_berkeley_2013"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_output_o_product_of","secondary_identifiers":["GOREL:0001029"],"termid":"_global:has_output_o_product_of"}


id: PBO:0079755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urocortin","termid":"PBO:0079755"}


id: GO:1905246
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of aspartic-type peptidase activity.","definition_xrefs":["GOC:jl","GOC:TermGenie","PMID:21745575","GO_REF:0000059"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of aspartic-type peptidase activity (obsolete GO:1905246)","synonyms":[{"name":"down regulation of aspartic-type peptidase activity","type":"exact"},{"name":"down-regulation of aspartic-type peptidase activity","type":"exact"},{"name":"downregulation of aspartic-type peptidase activity","type":"exact"},{"name":"inhibition of aspartic-type peptidase activity","type":"narrow"},{"name":"pepsin inhibitor","type":"related"}],"termid":"GO:1905246"}


id: GO:0052702
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of compounds derived from histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified amino acid catabolic process","termid":"GO:0042219"},{"relation_name":"is_a","term_name":"modified histidine metabolic process","termid":"GO:0052701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modified histidine catabolic process","synonyms":[{"name":"cellular histidine derivative breakdown","type":"exact"},{"name":"cellular histidine derivative catabolic process","type":"exact"},{"name":"cellular histidine derivative catabolism","type":"exact"},{"name":"cellular histidine derivative degradation","type":"exact"},{"name":"cellular modified histidine breakdown","type":"exact"},{"name":"cellular modified histidine catabolic process","type":"exact"},{"name":"cellular modified histidine catabolism","type":"exact"},{"name":"cellular modified histidine degradation","type":"exact"},{"name":"histidine derivative catabolic process","type":"exact"},{"name":"modified histidine catabolism","type":"exact"}],"termid":"GO:0052702"}


id: PBO:0064979
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 35, pseudogene","termid":"PBO:0064979"}


id: FYPO:0001672
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a GTPase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000257"],"is_obsolete":false,"name":"normal GTPase activity","termid":"FYPO:0001672"}


id: GO:0018587
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete limonene 8-monooxygenase activity (obsolete GO:0018587)","synonyms":[{"name":"limonene 8-monooxygenase activity","type":"exact"}],"termid":"GO:0018587"}


id: PBO:0066673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras like without CAAX 2","termid":"PBO:0066673"}


id: MONDO:0020329
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete classic Hodgkin lymphoma, lymphocyte-rich type (obsolete MONDO:0020329)","termid":"MONDO:0020329","xrefs":{"Monarch":{"xref_id":"0020329"}}}


id: PBO:0087655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the HIR complex; a nucleosome assembly complex involved in regulation of histone gene transcription; involved in position-dependent gene silencing and nucleosome reassembly; ortholog of human CABIN1 protein","termid":"PBO:0087655"}


id: MONDO:0011124
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare primary bone dysplasia disorder characterized by the association of dental anomalies (oligodontia with pointed incisors) and generalized platyspondyly with epiphyseal and metaphyseal involvement. Thin tapering fingers and accentuated palmar creases are additional features.","definition_xrefs":["Orphanet:168451"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"spondyloepiphyseal dysplasia","termid":"MONDO:0016761"},{"relation_name":"is_a","term_name":"spondyloepimetaphyseal dysplasia","termid":"MONDO:0100510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"spondyloepimetaphyseal dysplasia-abnormal dentition syndrome","secondary_identifiers":["UMLS:C1866507","MEDGEN:356550","OMIM:601668","MESH:C566644","GARD:17030"],"synonyms":[{"name":"SEMDAD","type":"related"},{"name":"spondyloepimetaphyseal dysplasia with abnormal dentition","type":"related"}],"termid":"MONDO:0011124","xrefs":{"Monarch":{"xref_id":"0011124"}}}


id: PBO:0063244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin alpha 9","termid":"PBO:0063244"}


id: PBO:0084029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi matrix protein; involved in the structural organization of the cis-Golgi; interacts genetically with COG3 and USO1","termid":"PBO:0084029"}


id: GO:0045949
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of phosphorus utilization.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phosphorus utilization","termid":"GO:0006795"},{"relation_name":"is_a","term_name":"positive regulation of phosphorus metabolic process","termid":"GO:0010562"},{"relation_name":"positively_regulates","term_name":"phosphorus utilization","termid":"GO:0006794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of phosphorus utilization","synonyms":[{"name":"activation of phosphorus utilization","type":"narrow"},{"name":"stimulation of phosphorus utilization","type":"narrow"},{"name":"up regulation of phosphorus utilization","type":"exact"},{"name":"up-regulation of phosphorus utilization","type":"exact"},{"name":"upregulation of phosphorus utilization","type":"exact"}],"termid":"GO:0045949"}


id: PATO:0000844
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000844 auditory acuity (obsolete PATO:0000844)","termid":"PATO:0000844"}


id: PR:O13453
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pmp1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13453"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine-protein phosphatase pmp1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1685.01","synonyms":[{"name":"Spom972h-pmp1","type":"exact"}],"termid":"PR:O13453"}


id: MOD:00009
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that removes a residue, or inserts or replaces a residue with a natural, standard or nonstandard, encoded residue.","definition_xrefs":["RESID:AA0000","PubMed:6692818"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by amino acid modified","termid":"MOD:01157"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"natural residue","synonyms":[{"name":"Res","type":"exact"},{"name":"alpha-amino acid","type":"exact"}],"termid":"MOD:00009"}


id: GO:1902320
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any DNA duplex unwinding that is involved in nuclear cell cycle DNA replication.","definition_xrefs":["GOC:TermGenie","GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete nuclear DNA replication DNA duplex unwinding (obsolete GO:1902320)","synonyms":[{"name":"DNA duplex unwinding involved in DNA replication during S phase","type":"related"},{"name":"DNA duplex unwinding involved in DNA replication involved in S phase","type":"exact"},{"name":"DNA duplex unwinding involved in DNA replication involved in S-phase","type":"exact"},{"name":"DNA duplex unwinding involved in nuclear cell cycle DNA replication","type":"exact"},{"name":"DNA unwinding involved in DNA replication during S phase","type":"related"},{"name":"DNA unwinding involved in DNA replication involved in S phase","type":"exact"},{"name":"DNA unwinding involved in DNA replication involved in S-phase","type":"exact"},{"name":"DNA unwinding involved in nuclear cell cycle DNA replication","type":"exact"},{"name":"duplex DNA melting involved in DNA replication during S phase","type":"related"},{"name":"duplex DNA melting involved in DNA replication involved in S phase","type":"exact"},{"name":"duplex DNA melting involved in DNA replication involved in S-phase","type":"exact"}],"termid":"GO:1902320"}


id: PBO:0083819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential subunit of Sec63 complex; with Sec61 complex, Kar2p/BiP and Lhs1p forms a channel competent for SRP-dependent and post-translational SRP-independent protein targeting and import into the ER; other members are Sec62p, Sec66p, and Sec72p","termid":"PBO:0083819"}


id: PR:000050250
data:
  {"annotation_feature_type":"gene","cv_name":"protein","direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP-binding protein rho2 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC16.01","synonyms":[{"name":"SPAC16.01","type":"related"},{"name":"Spom-rho2","type":"exact"},{"name":"rho2","type":"related"}],"termid":"PR:000050250"}


id: PBO:0057579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 876","termid":"PBO:0057579"}


id: MONDO:0017223
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The transitional form of Pelizaeus-Merzbacher disease (PMD) is the intermediate form of PMD.","definition_xrefs":["Orphanet:280224"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Pelizeaus-Merzbacher spectrum disorder","termid":"MONDO:0010714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"Pelizaeus-Merzbacher disease, transitional form","secondary_identifiers":["MEDGEN:199764","UMLS:C0751917","icd11.foundation:1471805474","GARD:21074"],"synonyms":[{"name":"transitional PMD","type":"exact"}],"termid":"MONDO:0017223","xrefs":{"Monarch":{"xref_id":"0017223"}}}


id: PBO:0083675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endoribonuclease; subunit of the mRNA cleavage and polyadenylation specificity complex; required for 3' processing, splicing, and transcriptional termination of mRNAs and snoRNAs; protein abundance increases in response to DNA replication stress; YSH1 has a paralog, SYC1, that arose from the whole genome duplication","termid":"PBO:0083675"}


id: PBO:0040080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arylsulfatase B","termid":"PBO:0040080"}


id: FYPO:0004557
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell growth phenotype in which vegetative cell population growth is increased relative to normal. Increased growth may reflect an increased growth rate (i.e. faster growth), growth that occurs to a greater extent than normal, or both.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cell population growth","termid":"FYPO:0003937"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000003","FYPO:0002058","FYPO:0000139","FYPO:0002057"],"is_obsolete":false,"name":"increased vegetative cell population growth","synonyms":[{"name":"fast aerobic vegetative cell population growth","type":"narrow"},{"name":"fast vegetative cell population growth","type":"narrow"},{"name":"increased aerobic vegetative cell population growth","type":"narrow"}],"termid":"FYPO:0004557"}


id: GO:0060527
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The branching morphogenesis process in which the prostate epithelial cords branch freely to create the structure of the prostate acini.","definition_xrefs":["PMID:18977204","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branching involved in prostate gland morphogenesis","termid":"GO:0060442"},{"relation_name":"part_of","term_name":"prostate glandular acinus morphogenesis","termid":"GO:0060526"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis","termid":"GO:0060527"}


id: GO:0008616
data:
  {"annotated_genes":["SJAG_06284","SJAG_02179","SJAG_01781","SJAG_00683"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91453,100370,97574,100369],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0002099"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of queuosines, a series of nucleosides found in position 34 of tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents.","definition_xrefs":["GOC:go_curators","ISBN:0198506732","PMID:28208705"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00683":null,"SJAG_01781":null,"SJAG_02179":null,"SJAG_06284":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tRNA queuosine(34) biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"queuosine anabolism","type":"exact"},{"name":"queuosine biosynthesis","type":"exact"},{"name":"queuosine biosynthetic process","type":"exact"},{"name":"queuosine formation","type":"exact"},{"name":"queuosine synthesis","type":"exact"}],"termid":"GO:0008616","terms_by_termid":{"GO:0002099":null}}


id: MOD:00791
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamine residue to L-glutamic acid with one (18)O.","definition_xrefs":["PubMed:8382902","Unimod:366#Q"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deamidated L-glutamine","termid":"MOD:00685"},{"relation_name":"is_a","term_name":"1x(18)O labeled deamidated residue","termid":"MOD:00852"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1x(18)O labeled deamidated L-glutamine","synonyms":[{"name":"Deamidated:18O(1)","type":"related"},{"name":"Deamidation in presence of O18","type":"related"}],"termid":"MOD:00791"}


id: PBO:0027073
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_DNA_replication_lagging_strand_elongation","termid":"PBO:0027073"}


id: MONDO:1012114
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital hypomyelinogenesis, non-human animal","termid":"MONDO:1011845"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital hypomyelinogenesis, dog","secondary_identifiers":["OMIA:000527-9615"],"termid":"MONDO:1012114","xrefs":{"Monarch":{"xref_id":"1012114"}}}


id: PBO:0116614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3140","termid":"PBO:0116614"}


id: MONDO:0016864
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Duane-radial ray syndrome","termid":"MONDO:0011812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005497","MONDO:0000426"],"is_obsolete":false,"name":"Okihiro syndrome due to a point mutation","secondary_identifiers":["GARD:20788","MEDGEN:1842838","Orphanet:261647","UMLS:C5679683"],"synonyms":[{"name":"Duane-radial ray syndrome due to a point mutation","type":"exact"}],"termid":"MONDO:0016864","xrefs":{"Monarch":{"xref_id":"0016864"}}}


id: PBO:0047597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FHAD1 antisense RNA 1","termid":"PBO:0047597"}


id: PBO:0058469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5571","termid":"PBO:0058469"}


id: SO:0000334
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Non-coding region of sequence similarity by descent from a common ancestor.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"conserved_region","termid":"SO:0000330"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nc_conserved_region","synonyms":[{"name":"conserved non-coding element","type":"exact"},{"name":"conserved non-coding sequence","type":"exact"},{"name":"nc conserved region","type":"exact"},{"name":"noncoding conserved region","type":"exact"}],"termid":"SO:0000334"}


id: GO:0042671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a retinal cone cell regardless of its environment; upon determination, the cell fate cannot be reversed.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"photoreceptor cell fate determination","termid":"GO:0043703"},{"relation_name":"part_of","term_name":"retinal cone cell fate commitment","termid":"GO:0046551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retinal cone cell fate determination","termid":"GO:0042671"}


id: MONDO:0020983
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Disease-related laceration or tearing of tissues of the heart, including the free-wall MYOCARDIUM; HEART SEPTUM; PAPILLARY MUSCLES; CHORDAE TENDINEAE; and any of the HEART VALVES. Pathological rupture usually results from myocardial infarction (HEART RUPTURE, POST-INFARCTION).","definition_xrefs":["MESH:D006341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart disorder","termid":"MONDO:0005267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"myocardial rupture","secondary_identifiers":["UMLS:C0018813","MEDGEN:6750"],"synonyms":[{"name":"Cardiac Free Wall Rupture","type":"related"},{"name":"Cardiac Rupture","type":"related"},{"name":"Cardiac Ruptures","type":"related"},{"name":"Free Wall Rupture, Heart","type":"related"},{"name":"Heart Rupture","type":"related"},{"name":"Heart Ruptures","type":"related"},{"name":"Myocardial Rupture","type":"related"},{"name":"Rupture of heart","type":"related"},{"name":"Ventricular Free Wall Rupture","type":"related"}],"termid":"MONDO:0020983","xrefs":{"Monarch":{"xref_id":"0020983"}}}


id: PBO:0008159
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"the phenotypes attributed to imp1 in PMID:18692466 have since been attributed to a truncated allele of SPAC11E3.05","termid":"PBO:0008159"}


id: GO:0004830
data:
  {"annotated_genes":["SJAG_04840","SJAG_01522"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71685,72959],"is_not":false,"summary":null,"term":"GO:0004830"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophanyl-tRNA(Trp).","definition_xrefs":["EC:6.1.1.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01522":null,"SJAG_04840":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0140101","GO:0016874","GO:0003824","GO:0003674","GO:0140098"],"is_obsolete":false,"name":"tryptophan-tRNA ligase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-380222","Reactome:R-HSA-379977","RHEA:24080","MetaCyc:TRYPTOPHAN--TRNA-LIGASE-RXN"],"synonyms":[{"name":"L-tryptophan-tRNA(Trp) ligase (AMP-forming) activity","type":"related"},{"name":"L-tryptophan-tRNATrp ligase (AMP-forming)","type":"related"},{"name":"L-tryptophan:tRNATrp ligase (AMP-forming)","type":"related"},{"name":"TrpRS activity","type":"related"},{"name":"tryptophan translase activity","type":"related"},{"name":"tryptophanyl ribonucleic synthetase activity","type":"related"},{"name":"tryptophanyl-tRNA synthase activity","type":"related"},{"name":"tryptophanyl-tRNA synthetase activity","type":"exact"},{"name":"tryptophanyl-transfer RNA synthetase activity","type":"related"},{"name":"tryptophanyl-transfer ribonucleate synthetase activity","type":"related"},{"name":"tryptophanyl-transfer ribonucleic acid synthetase activity","type":"related"},{"name":"tryptophanyl-transfer ribonucleic synthetase activity","type":"related"}],"termid":"GO:0004830","terms_by_termid":{"GO:0004830":null}}


id: PR:Q9UT96
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC323.03c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UT96"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C323.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC323.03c","synonyms":[{"name":"Spom972h-SPAC323.03c","type":"exact"}],"termid":"PR:Q9UT96"}


id: FYPO:0000988
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to arsenic is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular response to chemical stimulus during vegetative growth","termid":"FYPO:0001318"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000298","FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal cellular response to arsenic","synonyms":[{"name":"normal cellular response to arsenic during mitotic cell cycle","type":"related"},{"name":"normal cellular response to arsenic during vegetative growth","type":"exact"}],"termid":"FYPO:0000988"}


id: PBO:0073490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shugoshin 2","termid":"PBO:0073490"}


id: PBO:0085350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phospholipid-binding hydrophilin; essential to overcome desiccation-rehydration process; expression is induced by osmotic stress; SIP18 has a paralog, GRE1, that arose from the whole genome duplication","termid":"PBO:0085350"}


id: PBO:0055646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3085","termid":"PBO:0055646"}


id: GO:0008672
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-dehydro-3-deoxy-D-glucarate = pyruvate + tartronate semialdehyde.","definition_xrefs":["EC:4.1.2.20"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2-dehydro-3-deoxyglucarate aldolase activity","secondary_identifiers":["MetaCyc:4.1.2.20-RXN","RHEA:10268"],"synonyms":[{"name":"2-dehydro-3-deoxy-D-glucarate tartronate-semialdehyde-lyase (pyruvate-forming)","type":"related"},{"name":"2-dehydro-3-deoxy-D-glucarate tartronate-semialdehyde-lyase activity","type":"related"},{"name":"2-keto-3-deoxyglucarate aldolase activity","type":"related"},{"name":"alpha-keto-beta-deoxy-D-glucarate aldolase activity","type":"related"}],"termid":"GO:0008672"}


id: GO:0018175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of a nucleotide to a protein amino acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein nucleotidylation","synonyms":[{"name":"protein amino acid nucleotidylation","type":"exact"}],"termid":"GO:0018175"}


id: PBO:0090112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U4/U6 x U5 tri-snRNP complex subunit","termid":"PBO:0090112"}


id: GO:0071458
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the endoplasmic reticulum membrane consisting of the gene products that penetrate only the cytoplasmic side of the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of cytoplasmic side of endoplasmic reticulum membrane (obsolete GO:0071458)","synonyms":[{"name":"integral to ER membrane, cytosolic side","type":"exact"},{"name":"integral to cytosolic leaflet of endoplasmic reticulum membrane","type":"exact"},{"name":"integral to cytosolic side of ER membrane","type":"exact"},{"name":"integral to cytosolic side of endoplasmic reticulum membrane","type":"exact"}],"termid":"GO:0071458"}


id: GO:0000914
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a structure composed of actin, myosin, and associated proteins that will function in cytokinesis in cells that perform cytokinesis by cell plate formation. The structure usually contains antiparallel microtubules and membrane (often visible as vesicles).","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"assembly of actomyosin apparatus involved in mitotic cytokinesis","termid":"GO:1902407"},{"relation_name":"part_of","term_name":"cytokinesis by cell plate formation","termid":"GO:0000911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0000281"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0000281","GO:0007049","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"phragmoplast assembly","synonyms":[{"name":"phragmoplast formation","type":"related"}],"termid":"GO:0000914"}


id: MONDO:0016578
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Mitochondrial oxidative phosphorylation disorder due to nuclear DNA anomalies is a group of clinically heterogeneous diseases, commonly defined by lack of cellular energy due to defects of oxidative phosphorylation (OXPHOS), resulting from pathogenic mutations in the nuclear DNA. Mitochondrial oxidative phosphorylation disorder due to nuclear DNA anomalies includes diseases classified according to defects in: genes encoding structural components of OXPHOS complexes (such as Leigh syndrome, coenzyme Q10 deficiency); genes encoding assembly factors of OXPHOS complexes (such as GRACILE syndrome); genes altering the stability of mitochondrial DNA (such as autosomal dominant progressive external ophthalmoplegia, mitochondrial DNA depletion syndrome); mitochondrial protein synthesis.","definition_xrefs":["Orphanet:2443"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial oxidative phosphorylation disorder due to nuclear DNA anomalies (obsolete MONDO:0016578)","synonyms":[{"name":"OXPHOS disease due to nDNA anomalies","type":"exact"},{"name":"OXPHOS disease due to nuclear DNA anomalies","type":"exact"},{"name":"mitochondrial oxidative phosphorylation disorder due to nDNA anomalies","type":"exact"}],"termid":"MONDO:0016578","xrefs":{"Monarch":{"xref_id":"0016578"}}}


id: GO:0016168
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a chlorophyll; a compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tetrapyrrole binding","termid":"GO:0046906"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"chlorophyll binding","termid":"GO:0016168"}


id: GO:0043884
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + corrinoid protein = CO + methylcorrinoid protein + CoA.","definition_xrefs":["PMID:1748656","EC:2.3.1.169"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016746","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"CO-methylating acetyl-CoA synthase activity","secondary_identifiers":["MetaCyc:ACETYLSYNCLTH-RXN","RHEA:45212"],"synonyms":[{"name":"ACS","type":"related"},{"name":"CO-methylating acetyl-coenzyme A synthase activity","type":"exact"},{"name":"acetyl-CoA synthase activity","type":"broad"},{"name":"acetyl-CoA:corrinoid protein O-acetyltransferase activity","type":"exact"}],"termid":"GO:0043884"}


id: PBO:0069162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 414, pseudogene","termid":"PBO:0069162"}


id: GO:0046960
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An increased in a behavioral response to a repeated stimulus. For example, a shock to the tail of the marine snail Aplysia, to which the snail responds by withdrawing its gill, will result in increased gill withdrawal the next time the skin is touched.","definition_xrefs":["ISBN:0582227089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nonassociative learning","termid":"GO:0046958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sensitization","secondary_identifiers":["Wikipedia:Sensitization"],"termid":"GO:0046960"}


id: MONDO:0015687
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"chronic leukemia","termid":"MONDO:0001014"},{"relation_name":"is_a","term_name":"myeloproliferative neoplasm","termid":"MONDO:0020076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046","MONDO:0004992"],"is_obsolete":false,"name":"chronic eosinophilic leukemia","secondary_identifiers":["NCIT:C4563","MedDRA:10065854","DOID:0080367","SCTID:188733003","UMLS:C0346421","MESH:C580364","ICDO:9964/3","ONCOTREE:CELNOS","MEDGEN:91106","Orphanet:168940","GARD:20104"],"synonyms":[{"name":"CEL","type":"exact"},{"name":"CEL/hypereosinophilic syndrome","type":"exact"},{"name":"CELNOS","type":"related"},{"name":"chronic eosinophilic leukemia","type":"exact"},{"name":"chronic eosinophilic leukemia/hypereosinophilic syndrome","type":"exact"},{"name":"eosinophilic leukaemia","type":"exact"},{"name":"eosinophilic leukemia","type":"exact"}],"termid":"MONDO:0015687","xrefs":{"Monarch":{"xref_id":"0015687"}}}


id: GO:0047352
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5'-adenylyl sulfate + NH4 = adenosine 5'-phosphoramidate + 2 H+ + sulfate.","definition_xrefs":["EC:2.7.7.51","RHEA:19197"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylyltransferase activity","termid":"GO:0070566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016779","GO:0003824"],"is_obsolete":false,"name":"adenylylsulfate-ammonia adenylyltransferase activity","secondary_identifiers":["KEGG_REACTION:R01619","MetaCyc:2.7.7.51-RXN"],"synonyms":[{"name":"APSAT","type":"related"},{"name":"adenylylsulfate:ammonia adenylyltransferase activity","type":"related"},{"name":"adenylylsulphate-ammonia adenylyltransferase activity","type":"exact"}],"termid":"GO:0047352"}


id: GO:0048200
data:
  {"annotated_genes":["SJAG_03268","SJAG_04391"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[119591,72943],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048205"}]},"cv_name":"biological_process","definition":"The addition of specific coat proteins to Golgi membranes during the formation of transport vesicles.","definition_xrefs":["ISBN:0716731363","GOC:jid","GOC:mah","PMID:10219233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle coating","termid":"GO:0006901"},{"relation_name":"part_of","term_name":"Golgi vesicle budding","termid":"GO:0048194"},{"relation_name":"part_of","term_name":"vesicle targeting, to, from or within Golgi","termid":"GO:0048199"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03268":null,"SJAG_04391":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0006810","GO:0061024"],"is_obsolete":false,"name":"Golgi transport vesicle coating","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"dictyosome transport vesicle coating","type":"narrow"}],"termid":"GO:0048200","terms_by_termid":{"GO:0048205":null}}


id: PBO:0085275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peroxisomal integral membrane protein; involved in negative regulation of peroxisome size; partially functionally redundant with Pex31p; genetic interactions suggest action at a step downstream of steps mediated by Pex28p and Pex29p","termid":"PBO:0085275"}


id: GO:1902752
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of renal amino acid absorption.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:1526373","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of renal system process","termid":"GO:0098801"},{"relation_name":"regulates","term_name":"renal amino acid absorption","termid":"GO:1990297"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of renal amino acid absorption","termid":"GO:1902752"}


id: FYPO:0008274
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A metabolism phenotype observed in the vegetative growth phase of the life cycle in which glutamate biosynthesis is abnormal.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular metabolism phenotype during vegetative growth","termid":"FYPO:0001348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased glutamate biosynthesis","termid":"FYPO:0008274"}


id: GO:1903280
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of calcium:sodium antiporter activity.","definition_xrefs":["GOC:TermGenie","GOC:rl","GOC:BHF","GO_REF:0000059","PMID:19683723","GOC:mtg_cardiac_conduct_nov11"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of calcium:sodium antiporter activity (obsolete GO:1903280)","synonyms":[{"name":"down regulation of calcium:sodium antiporter activity","type":"exact"},{"name":"down regulation of mitochondrial sodium/calcium ion exchange","type":"related"},{"name":"down regulation of sodium/calcium exchanger","type":"exact"},{"name":"down regulation of sodium:calcium exchange","type":"related"},{"name":"down-regulation of calcium:sodium antiporter activity","type":"exact"},{"name":"down-regulation of mitochondrial sodium/calcium ion exchange","type":"related"},{"name":"down-regulation of sodium/calcium exchanger","type":"exact"},{"name":"down-regulation of sodium:calcium exchange","type":"related"},{"name":"downregulation of calcium:sodium antiporter activity","type":"exact"},{"name":"downregulation of mitochondrial sodium/calcium ion exchange","type":"related"},{"name":"downregulation of sodium/calcium exchanger","type":"exact"},{"name":"downregulation of sodium:calcium exchange","type":"related"},{"name":"inhibition of calcium:sodium antiporter activity","type":"narrow"},{"name":"inhibition of mitochondrial sodium/calcium ion exchange","type":"related"},{"name":"inhibition of sodium/calcium exchanger","type":"narrow"},{"name":"inhibition of sodium:calcium exchange","type":"related"},{"name":"negative regulation of mitochondrial sodium/calcium ion exchange","type":"related"},{"name":"negative regulation of sodium/calcium exchanger","type":"exact"},{"name":"negative regulation of sodium:calcium exchange","type":"related"}],"termid":"GO:1903280"}


id: PR:Q9UTE2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00382","PANTHER:PTHR10755:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxygen-dependent coproporphyrinogen-III oxidase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC222.11","secondary_identifiers":["UniProtKB:Q9UTE2"],"synonyms":[{"name":"COX (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Coproporphyrinogenase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-CPOX","type":"exact"},{"name":"coprogen oxidase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTE2"}


id: GO:0015922
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: aspartate + O2 = iminosuccinate + hydrogen peroxide.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete aspartate oxidase activity (obsolete GO:0015922)","termid":"GO:0015922"}


id: GO:0009293
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A type of horizontal gene transfer in which genetic material is introduced into a cell mediated by a virus.","definition_xrefs":["PMID:33597173","PMID:18265289"],"direct_ancestors":[{"relation_name":"is_a","term_name":"horizontal gene transfer","termid":"GO:0009292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"transduction","secondary_identifiers":["Wikipedia:Transduction_(genetics)"],"termid":"GO:0009293"}


id: PBO:0027051
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-enlarged_post-anaphase_array_with_increased_number_of_microtubules","termid":"PBO:0027051"}


id: MONDO:0019207
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"DEND syndrome is a very rare, generally severe form of neonatal diabetes mellitus (NDM) characterized by a triad of developmental delay, epilepsy, and neonatal diabetes.","definition_xrefs":["Orphanet:79134"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"epilepsy syndrome","termid":"MONDO:0015650"},{"relation_name":"is_a","term_name":"permanent neonatal diabetes mellitus","termid":"MONDO:0100164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0019254"},{"rel_name":"is_a","termid":"MONDO:0005015"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004335","MONDO:0019254","MONDO:0037792","MONDO:0005015"],"is_obsolete":false,"name":"DEND syndrome","secondary_identifiers":["UMLS:C4303593","NCIT:C131845","SCTID:721088003","GARD:16701","MEDGEN:929262"],"synonyms":[{"name":"K ATP associated developmental delay, epilepsy and neonatal diabetes","type":"exact"},{"name":"developmental delay-epilepsy-neonatal diabetes syndrome","type":"exact"}],"termid":"MONDO:0019207","xrefs":{"Monarch":{"xref_id":"0019207"}}}


id: PBO:0057752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1911","termid":"PBO:0057752"}


id: PATO:0000834
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000834 relative visual threshold value (obsolete PATO:0000834)","termid":"PATO:0000834"}


id: PBO:0068646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 27, pseudogene","termid":"PBO:0068646"}


id: PBO:0001590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LAlv9 family protein, involved in post Golgi transport (predicted)","termid":"PBO:0001590"}


id: MONDO:0009600
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metaphyseal dysplasia, anetoderma, and optic atrophy","secondary_identifiers":["UMLS:C1855174","MEDGEN:381576","MESH:C565395","OMIM:250450"],"synonyms":[{"name":"metaphyseal dysplasia, anetoderma, and optic atrophy","type":"exact"}],"termid":"MONDO:0009600","xrefs":{"Monarch":{"xref_id":"0009600"}}}


id: PBO:0034518
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_nuclear_envelope_during_vegetative_growth","termid":"PBO:0034518"}


id: MONDO:0859175
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nephronophthisis","termid":"MONDO:0019005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240","MONDO:0006025"],"is_obsolete":false,"name":"nephronophthisis-like nephropathy 2","secondary_identifiers":["MEDGEN:1794163","OMIM:619468","UMLS:C5561953"],"termid":"MONDO:0859175","xrefs":{"Monarch":{"xref_id":"0859175"}}}


id: PR:O13685
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ubiquitin-conjugating enzyme E2 N that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR24067:SF30","OMA:SCHPO02194","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-conjugating enzyme E2 13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11E3.04c","secondary_identifiers":["UniProtKB:O13685"],"synonyms":[{"name":"E2 ubiquitin-conjugating enzyme 13 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-UBE2N","type":"exact"},{"name":"ubiquitin carrier protein 13 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin-protein ligase 13 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13685"}


id: PBO:0040621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAF nuclear assembly factor 1","termid":"PBO:0040621"}


id: MONDO:0100309
data:
  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10524"}]},"cv_name":"mondo","definition":"An 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