# terms

id: FYPO:0003429
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell contains fewer, and shorter, cytoplasmic microtubules than normal during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubules present in decreased numbers","termid":"FYPO:0003430"},{"relation_name":"is_a","term_name":"short interphase microtubules","termid":"FYPO:0006103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002399","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000054"],"is_obsolete":false,"name":"short interphase microtubules present in decreased numbers","synonyms":[{"name":"short cytoplasmic microtubules present in decreased numbers during interphase of mitotic cell cycle","type":"exact"},{"name":"short cytoplasmic microtubules present in decreased numbers during mitotic interphase","type":"exact"},{"name":"short interphase cytoplasmic microtubules present in decreased numbers","type":"exact"},{"name":"short interphase microtubules present in decreased numbers during vegetative growth","type":"exact"},{"name":"short interphase microtubules present in reduced numbers","type":"exact"}],"termid":"FYPO:0003429"}


id: PBO:0028047
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-long_astral_microtubules","termid":"PBO:0028047"}


id: PBO:0079267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetratricopeptide repeat domain 39A","termid":"PBO:0079267"}


id: MONDO:0004638
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An antiquated term that refers to a non-Hodgkin lymphoma composed of small and medium sized lymphocytes.","definition_xrefs":["NCIT:C26919"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"sarcoma","termid":"MONDO:0005089"},{"relation_name":"is_a","term_name":"lymphatic system cancer","termid":"MONDO:0000612"},{"relation_name":"is_a","term_name":"non-Hodgkin lymphoma","termid":"MONDO:0018908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0004992","MONDO:0005570"],"is_obsolete":false,"name":"lymphosarcoma","secondary_identifiers":["SCTID:188498009","ICD9:200.0","MEDGEN:811370","DOID:8675","NCIT:C27824","GARD:6946","UMLS:C3714542","SCTID:373168002","SCTID:118601006","ICD9:200.7","ICD9:200.1","ICD9:200.10"],"synonyms":[{"name":"diffuse lymphoma","type":"exact"},{"name":"lymphosarcoma","type":"exact"},{"name":"malignant lymphoma (category)","type":"related"}],"termid":"MONDO:0004638","xrefs":{"Monarch":{"xref_id":"0004638"}}}


id: PBO:0000737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"haspin related kinase Hrk1","termid":"PBO:0000737"}


id: FYPO:0000828
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which entry into the G1 phase of the mitotic cell cycle (exit from mitosis) begins earlier than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic G1 phase progression","termid":"FYPO:0000602"},{"relation_name":"is_a","term_name":"premature cell cycle phase transition","termid":"FYPO:0000827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"premature mitotic G1 phase entry","synonyms":[{"name":"accelerated entry into G1","type":"related"},{"name":"advanced mitotic G1 phase entry","type":"exact"},{"name":"advanced mitotic G1 progression","type":"related"},{"name":"mitotic cell cycle advance in G1","type":"related"},{"name":"premature G1 phase entry during mitotic cell cycle","type":"exact"},{"name":"premature exit from mitosis","type":"exact"},{"name":"premature mitotic G1 phase entry during vegetative growth","type":"exact"}],"termid":"FYPO:0000828"}


id: PATO:0002161
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Having two horns or horn-shaped branches.","definition_xrefs":["mondofacto:mondofacto"],"direct_ancestors":[{"relation_name":"is_a","term_name":"concave 3-D shape","termid":"PATO:0002008"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bicornuate","termid":"PATO:0002161"}


id: PBO:0034585
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-slow_vegetative_cell_population_growth_followed_by_return_to_normal_growth_rate","termid":"PBO:0034585"}


id: FYPO:0002005
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the nuclear envelope has a lobate cross-section, i.e. one in which the edge has deep indentations or undulations that form lobes.","definition_xrefs":["PomBase:mah","PMID:2211869"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear envelope morphology during vegetative growth","termid":"FYPO:0000769"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002403","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"lobate nuclear envelope","synonyms":[{"name":"leaf-like nuclear envelope morphology","type":"related"},{"name":"lobate nuclear envelope during mitotic cell cycle","type":"related"},{"name":"lobate nuclear envelope during vegetative growth","type":"exact"}],"termid":"FYPO:0002005"}


id: PBO:0055775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"loss of heterozygosity on chromosome 1, region 1","termid":"PBO:0055775"}


id: PBO:0063632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"profilin 1 pseudogene 10","termid":"PBO:0063632"}


id: MONDO:0001262
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An disease or disorder caused by infection with Histoplasma capsulatum var. duboisii.","definition_xrefs":["MONDO:patterns/specific_infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Histoplasma capsulatum infectious disease","termid":"MONDO:0002099"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"African histoplasmosis","secondary_identifiers":["ICD10CM:B39.5","MEDGEN:526120","UMLS:C0220977","DOID:11315","ICD9:115.10","SCTID:78511005"],"synonyms":[{"name":"African histoplasmosis","type":"exact"},{"name":"Histoplasma capsulatum var. duboisii caused disease or disorder","type":"exact"},{"name":"Histoplasma capsulatum var. duboisii disease or disorder","type":"exact"},{"name":"Histoplasma capsulatum var. duboisii infectious disease","type":"exact"},{"name":"Histoplasma duboisii infection","type":"related"},{"name":"infection by Histoplasma duboisii","type":"related"},{"name":"large form histoplasmosis","type":"related"}],"termid":"MONDO:0001262","xrefs":{"Monarch":{"xref_id":"0001262"}}}


id: MONDO:0032611
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex I deficiency, nuclear type","termid":"MONDO:0100223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial complex 1 deficiency, nuclear type 6","secondary_identifiers":["GARD:16316","MEDGEN:1648496","UMLS:C4748759","OMIM:618228","DOID:0112066"],"synonyms":[{"name":"MC1DN6","type":"related"},{"name":"MITOCHONDRIAL COMPLEX I DEFICIENCY, NUCLEAR TYPE 6","type":"related"}],"termid":"MONDO:0032611","xrefs":{"Monarch":{"xref_id":"0032611"}}}


id: SO:0001570
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant whereby a new splice site is created due to the activation of a new acceptor.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cryptic_splice_site_variant","termid":"SO:0001569"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cryptic_splice_acceptor","synonyms":[{"name":"cryptic splice acceptor","type":"exact"}],"termid":"SO:0001570"}


id: PBO:0031332
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_calcium","termid":"PBO:0031332"}


id: MONDO:0017447
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Congenital absence/hypoplasia of thumb is a rare developmental defect during embryogenesis characterized by underdevelopment of the thumb, ranging from a slight decrease in thumb size to complete absence of the thumb. The malformation may occur isolated, combined to other defects of the hand or upper limb, or as part of a multiple congenital anomaly syndrome.","definition_xrefs":["Orphanet:294988"],"gene_count":0,"genotype_count":0,"name":"obsolete congenital absence/hypoplasia of thumb (obsolete MONDO:0017447)","synonyms":[{"name":"thumb hypodactyly","type":"exact"},{"name":"thumb oligodactyly","type":"exact"}],"termid":"MONDO:0017447","xrefs":{"Monarch":{"xref_id":"0017447"}}}


id: MONDO:1012467
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"postpartum dysgalactia syndrome, non-human animal","termid":"MONDO:1011680"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"postpartum dysgalactia syndrome, pig","secondary_identifiers":["OMIA:001822-9823"],"termid":"MONDO:1012467","xrefs":{"Monarch":{"xref_id":"1012467"}}}


id: SO:0002055
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variant whereby the gene product is not functional or the gene product is not produced.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"functionally_abnormal","termid":"SO:0002218"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"null_mutation","synonyms":[{"name":"null mutation","type":"exact"}],"termid":"SO:0002055"}


id: PBO:0063727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatase and actin regulator 2","termid":"PBO:0063727"}


id: MONDO:0044209
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease that has its basis in the disruption of complement activation, lectin pathway.","definition_xrefs":["MONDO:patterns/basis_in_disruption_of_process"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complement deficiency","termid":"MONDO:0003832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"disorder of lectin complement activation pathway","secondary_identifiers":["OMIMPS:614372"],"synonyms":[{"name":"complement activation, lectin pathway disease","type":"exact"},{"name":"disorder of complement activation, lectin pathway","type":"exact"}],"termid":"MONDO:0044209","xrefs":{"Monarch":{"xref_id":"0044209"}}}


id: GO:0007249
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An intracellular signaling cassette characterized by the I-kappaB-kinase (IKK)-dependent activation of NF-kappaB, also known as the canonical NF-kappaB signaling cascade. The cascade begins with activation of a trimeric IKK complex (consisting of catalytic kinase subunits IKKalpha and/or IKKbeta, and the regulatory scaffold protein NEMO) and ends with the regulation of transcription of target genes by NF-kappaB. In a resting state, NF-kappaB dimers are bound to I-kappaB proteins, sequestering NF-kappaB in the cytoplasm. Phosphorylation of I-kappaB targets I-kappaB for ubiquitination and proteasomal degradation, thus releasing the NF-kappaB dimers, which can translocate to the nucleus to bind DNA and regulate transcription. The canonical NF-kappaB pathway is mainly stimulated by proinflammatory cytokines such as IL-1beta, tumor necrosis factor (TNF)-alpha, antigen ligands, and toll-like receptors (TLRs).","definition_xrefs":["PMID:12773372","PMID:34659217","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular signaling cassette","termid":"GO:0141124"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"canonical NF-kappaB signal transduction","secondary_identifiers":["Reactome:R-HSA-9014325","Reactome:R-HSA-5357956","Reactome:R-HSA-937072"],"synonyms":[{"name":"I-kappaB kinase/NF-kappaB cascade","type":"exact"},{"name":"I-kappaB kinase/NF-kappaB signal transduction","type":"exact"},{"name":"I-kappaB kinase/NF-kappaB signaling","type":"exact"},{"name":"NF-kappaB cascade","type":"broad"},{"name":"canonical NF-kappaB signaling cascade","type":"exact"},{"name":"p50-dependent NF-kappaB signaling","type":"related"}],"termid":"GO:0007249"}


id: GO:0010374
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells.","definition_xrefs":["PMID:17259259"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-embryonic development","termid":"GO:0009791"},{"relation_name":"is_a","term_name":"plant epidermis development","termid":"GO:0090558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"stomatal complex development","termid":"GO:0010374"}


id: MONDO:0971064
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orofacial clefting-cardiac anomalies-facial dysmorphism syndrome","secondary_identifiers":["UMLS:C5925125","Orphanet:660021","MEDGEN:1864391"],"termid":"MONDO:0971064","xrefs":{"Monarch":{"xref_id":"0971064"}}}


id: PBO:0080769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X inactive specific transcript","termid":"PBO:0080769"}


id: PATO:0002016
data:
  {"annotation_feature_type":"gene","cv_name":"quality","direct_ancestors":[{"relation_name":"is_a","term_name":"qualitative","termid":"PATO:0000068"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"magnitude","termid":"PATO:0002016"}


id: PBO:0079855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unc-93 homolog B4 (pseudogene)","termid":"PBO:0079855"}


id: PBO:0057240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 431","termid":"PBO:0057240"}


id: PBO:0085226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Part of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p; associates with actin patches on cell cortex; promotes protein-protein interactions essential for endocytosis; binds to and activates Arp2/3 complex in vitro; phosphorylation of Thr-1225 is regulated by MAPK Hog1p in response to osmotic stress; previously thought to be a subunit of poly(A) ribonuclease","termid":"PBO:0085226"}


id: GO:0097093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of polyacyltrehalose, a pentaacylated, trehalose-based glycolipid.","definition_xrefs":["GOC:rs","PMID:19729090"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycolipid biosynthetic process","termid":"GO:0009247"},{"relation_name":"is_a","term_name":"polyacyltrehalose metabolic process","termid":"GO:0097092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"polyacyltrehalose biosynthetic process","synonyms":[{"name":"polyacyltrehalose anabolism","type":"exact"},{"name":"polyacyltrehalose biosynthesis","type":"exact"},{"name":"polyacyltrehalose formation","type":"exact"},{"name":"polyacyltrehalose synthesis","type":"exact"}],"termid":"GO:0097093"}


id: GO:0050087
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 [Fe(III)cytochrome c] + D-mannitol = 2 [Fe(II)cytochrome c] + D-fructose + 2 H+.","definition_xrefs":["RHEA:17597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor","termid":"GO:0016898"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"mannitol dehydrogenase (cytochrome) activity","secondary_identifiers":["EC:1.1.2.2","MetaCyc:MANNITOL-DEHYDROGENASE-CYTOCHROME-RXN"],"synonyms":[{"name":"D-mannitol:ferricytochrome-c 2-oxidoreductase activity","type":"related"},{"name":"polyol dehydrogenase activity","type":"broad"}],"termid":"GO:0050087"}


id: PBO:0081619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 548","termid":"PBO:0081619"}


id: MONDO:1012746
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any androgen-dependent cystinuria that occurs in intact male dogs.","definition_xrefs":["PMID:34438894"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal disease, dog","termid":"MONDO:1012235"},{"relation_name":"is_a","term_name":"cystinuria, non-human animal","termid":"MONDO:1012968"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sex-limited cystinuria, dog","secondary_identifiers":["OMIA:001881-9615"],"synonyms":[{"name":"cystinuria, type III, dog","type":"related"}],"termid":"MONDO:1012746","xrefs":{"Monarch":{"xref_id":"1012746"}}}


id: MONDO:0003268
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A tumor composed of two or more glial cell types (astrocytes, ependymal cells, and oligodendrocytes).","definition_xrefs":["NCIT:C3903"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glioma","termid":"MONDO:0021042"},{"relation_name":"is_a","term_name":"mixed neoplasm","termid":"MONDO:0021043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mixed glioma","secondary_identifiers":["DOID:5076","SCTID:443937008","ICDO:9382/3","MEDGEN:75477","UMLS:C0259783"],"synonyms":[{"name":"glioma, mixed","type":"exact"},{"name":"glioma, mixed, malignant","type":"exact"},{"name":"mixed glial neoplasm","type":"exact"},{"name":"mixed glial tumor","type":"exact"},{"name":"mixed glial tumour","type":"exact"},{"name":"mixed glioma","type":"exact"},{"name":"mixed glioma (morphologic abnormality)","type":"exact"},{"name":"mixed gliomas","type":"exact"},{"name":"mixed neuroglial neoplasm","type":"exact"},{"name":"mixed neuroglial tumor","type":"exact"},{"name":"mixed neuroglial tumour","type":"exact"}],"termid":"MONDO:0003268","xrefs":{"Monarch":{"xref_id":"0003268"}}}


id: FYPO:0007858
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes one or more rounds of rereplication of the entire genome without forming a mitotic spindle or undergoing cytokinesis.","definition_xrefs":["PomBase:mah","PMID:20967237"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal negative regulation of mitotic DNA replication initiation resulting in complete rereplication","termid":"FYPO:0001425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"mitotic DNA re-replication in absence of mitotic spindle","synonyms":[{"name":"abnormal negative regulation of mitotic DNA replication initiation resulting in complete rereplication in absence of mitotic spindle","type":"exact"},{"name":"abnormal negative regulation of mitotic DNA replication initiation resulting in complete rereplication in absence of mitotic spindle during mitotic cell cycle","type":"related"},{"name":"abnormal negative regulation of mitotic DNA replication initiation resulting in complete rereplication in absence of mitotic spindle during vegetative growth","type":"exact"},{"name":"mitotic DNA re-replication in the absence of normal mitotic spindle assembly and cytokinesis","type":"exact"}],"termid":"FYPO:0007858"}


id: PBO:0083794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein of the mitochondrial intermembrane space; forms a complex with Tim9p (TIM10 complex) that delivers hydrophobic proteins to the TIM22 complex for insertion into the inner membrane","termid":"PBO:0083794"}


id: PBO:0055516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2950","termid":"PBO:0055516"}


id: PBO:0030097
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_binding","termid":"PBO:0030097"}


id: PBO:0026994
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_phosphorylation_during_meiotic_cell_cycle","termid":"PBO:0026994"}


id: GO:0008256
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + protein L-histidine = ADP + protein N(pi)-phospho-L-histidine.","definition_xrefs":["EC:2.7.13.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein histidine kinase activity","termid":"GO:0004673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0140096","GO:0004672","GO:0016301"],"is_obsolete":false,"name":"protein histidine pros-kinase activity","secondary_identifiers":["MetaCyc:2.7.13.1-RXN","RHEA:22720"],"synonyms":[{"name":"ATP:protein-L-histidine N-pros-phosphotransferase activity","type":"related"},{"name":"ATP:protein-L-histidine Npi-phosphotransferase activity","type":"exact"},{"name":"protein-histidine pros-kinase activity","type":"exact"}],"termid":"GO:0008256"}


id: PBO:0029584
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_RNA_catabolic_process_during_vegetative_growth","termid":"PBO:0029584"}


id: MONDO:0011318
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tonoki syndrome","secondary_identifiers":["UMLS:C1863918","MESH:C536967","MEDGEN:355094","OMIM:603396"],"synonyms":[{"name":"Tonoki syndrome","type":"exact"},{"name":"short stature, brachydactyly, nail dysplasia and intellectual disability","type":"related"},{"name":"short stature, brachydactyly, nail dysplasia and mental retardation","type":"related"}],"termid":"MONDO:0011318","xrefs":{"Monarch":{"xref_id":"0011318"}}}


id: MONDO:0011135
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"superior transverse scapular ligament, calcification of, familial","secondary_identifiers":["MEDGEN:355711","MESH:C566638","OMIM:601708","UMLS:C1866424"],"synonyms":[{"name":"superior transverse scapular ligament, calcification of, familial","type":"exact"}],"termid":"MONDO:0011135","xrefs":{"Monarch":{"xref_id":"0011135"}}}


id: PBO:0088711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIID complex subunit 8","termid":"PBO:0088711"}


id: MONDO:0009729
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Nephropathy-deafness-hyperparathyroidism syndrome is characterized by renal failure without haematuria, parathyroid hyperplasia and sensorineural deafness. It has been described in five children born to consanguineous patents. The mode of inheritance appears to be autosomal recessive.","definition_xrefs":["Orphanet:2668"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nephropathy - deafness - hyperparathyroidism syndrome","secondary_identifiers":["MESH:C536401","OMIM:256120","GARD:3940","SCTID:724093004","MEDGEN:340569","UMLS:C1850553"],"synonyms":[{"name":"Edwards Patton Dilly syndrome","type":"related"},{"name":"Edwards-Patton-Dilly syndrome","type":"exact"},{"name":"nephropathy - deafness - hyperparathyroidism","type":"related"},{"name":"nephropathy, deafness, and hyperparathyroidism","type":"related"}],"termid":"MONDO:0009729","xrefs":{"Monarch":{"xref_id":"0009729"}}}


id: PBO:0048016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FRMPD3 antisense RNA 1","termid":"PBO:0048016"}


id: PBO:0064720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 56","termid":"PBO:0064720"}


id: PBO:0069360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 620, pseudogene","termid":"PBO:0069360"}


id: PBO:0050058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class I, Y (pseudogene)","termid":"PBO:0050058"}


id: GO:0010560
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of the chemical reactions and pathways resulting in the formation of a glycoprotein, a protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of macromolecule biosynthetic process","termid":"GO:0010557"},{"relation_name":"is_a","term_name":"regulation of glycoprotein biosynthetic process","termid":"GO:0010559"},{"relation_name":"is_a","term_name":"positive regulation of glycoprotein metabolic process","termid":"GO:1903020"},{"relation_name":"positively_regulates","term_name":"glycoprotein biosynthetic process","termid":"GO:0009101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of glycoprotein biosynthetic process","termid":"GO:0010560"}


id: PBO:0066733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 30","termid":"PBO:0066733"}


id: PBO:0076750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"teratocarcinoma-derived growth factor 1","termid":"PBO:0076750"}


id: GO:0098979
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A synapse consisting of a single presynapse and multiple postsynapses. These postsynapses may come from the same cell of from different cells. Polyadic synapses are common in arthropod and nematode central nervous systems.","definition_xrefs":["PMID:26780543"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synapse","termid":"GO:0045202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"polyadic synapse","termid":"GO:0098979"}


id: GO:0097033
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The biogenesis of a mitochondrial respiratory chain complex III (also known as cytochrome bc(1) complex or ubiquinol-cytochrome c reductase), a protein complex located in the mitochondrial inner membrane that forms part of the mitochondrial respiratory chain. Includes the synthesis of constituent proteins and their aggregation, arrangement and bonding together.","definition_xrefs":["GOC:mcc"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial respiratory chain complex III biogenesis (obsolete GO:0097033)","synonyms":[{"name":"mitochondrial cytochrome bc(1) complex biogenesis","type":"exact"}],"termid":"GO:0097033"}


id: MONDO:0014886
data:
  {"annotated_genes":["SJAG_02978"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87861],"is_not":false,"summary":null,"term":"MONDO:0014886"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"autosomal recessive non-syndromic intellectual disability","termid":"MONDO:0019502"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"hyperpigmentation of the skin","termid":"MONDO:0019289"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02978":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"severe growth deficiency-strabismus-extensive dermal melanocytosis-intellectual disability syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:17895","OMIM:617051","MEDGEN:934712","Orphanet:488627","UMLS:C4310745"],"synonyms":[{"name":"MRT55","type":"exact"},{"name":"intellectual disability, autosomal recessive 55","type":"exact"},{"name":"intellectual disability, autosomal recessive type 55","type":"exact"},{"name":"mental retardation, autosomal recessive 55","type":"exact"},{"name":"mental retardation, autosomal recessive type 55","type":"exact"},{"name":"neurodevelopmental disorder with microcephaly and gray sclerae","type":"exact"},{"name":"neurodevelopmental disorder with microcephaly and grey sclerae","type":"exact"}],"termid":"MONDO:0014886","terms_by_termid":{"MONDO:0014886":null},"xrefs":{"Monarch":{"xref_id":"0014886"}}}


id: GO:0048752
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the semicircular canals are generated and organized.","definition_xrefs":["GOC:dph","GOC:dgh","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube morphogenesis","termid":"GO:0035239"},{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"inner ear morphogenesis","termid":"GO:0042472"},{"relation_name":"part_of","term_name":"semicircular canal development","termid":"GO:0060872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"semicircular canal morphogenesis","synonyms":[{"name":"embryonic semicircular canal morphogenesis","type":"exact"}],"termid":"GO:0048752"}


id: PR:O74878
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12526:SF23","PRO:DNx","OMA:SCHPO04195"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC330.08","secondary_identifiers":["UniProtKB:O74878"],"synonyms":[{"name":"Spom972h-ALG11","type":"exact"},{"name":"alpha-1,2-mannosyltransferase alg11 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"asparagine-linked glycosylation protein 11 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"galactomannan deficiency protein 3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"glycolipid 2-alpha-mannosyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74878"}


id: GO:0072498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeletal joints over time, from formation to mature structure.","definition_xrefs":["GOC:BHF","GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic skeletal system development","termid":"GO:0048706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic skeletal joint development","termid":"GO:0072498"}


id: GO:0072073
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of an epithelium in the kidney over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelium development","termid":"GO:0060429"},{"relation_name":"part_of","term_name":"kidney development","termid":"GO:0001822"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"kidney epithelium development","termid":"GO:0072073"}


id: PBO:0114349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane amino acid transmembrane transporter Meu22","termid":"PBO:0114349"}


id: FYPO:0001348
data:
  {"alleles_by_uniquename":{"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_01787:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01787","name":"pck1delta","uniquename":"SJAG_01787:allele-1"},"SJAG_02621:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02621","name":"ago1delta","uniquename":"SJAG_02621:allele-1"},"SJAG_02796:allele-1":{"allele_type":"amino_acid_mutation","description":"A343T","gene_uniquename":"SJAG_02796","name":"pyk1-A343T","uniquename":"SJAG_02796:allele-1"},"SJAG_03118:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03118","name":"leo1delta","uniquename":"SJAG_03118:allele-1"},"SJAG_03689:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03689","name":"dcr1delta","uniquename":"SJAG_03689:allele-1"},"SJAG_04551:allele-2":{"allele_type":"amino_acid_insertion","description":"82-NITCIYDLDIIINPYNFNEVYIYEE-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sj(ins82-105)","uniquename":"SJAG_04551:allele-2"},"SJAG_04551:allele-4":{"allele_type":"partial_amino_acid_deletion","description":"Pmk1 from S. pombe with deleted residues 82-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sp(delta82-105)","uniquename":"SJAG_04551:allele-4"},"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[121285,121286],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006989"}],"single_locus_phenotype":[{"annotations":[121227],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002033"},{"annotations":[121223,121219],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001838"},{"annotations":[121460],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0003727"},{"annotations":[121213],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001038"},{"annotations":[120995],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004165"},{"annotations":[121278],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006989"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype that affects metabolism in the cell in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular metabolism phenotype","termid":"FYPO:0000140"},{"relation_name":"is_a","term_name":"cellular process phenotype during vegetative growth","termid":"FYPO:0001331"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00610":null,"SJAG_01787":null,"SJAG_02621":null,"SJAG_02796":null,"SJAG_03118":null,"SJAG_03689":null,"SJAG_04551":null,"SJAG_04697":null},"genotype_count":9,"genotypes_by_uniquename":{"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sj(ins82-105)(82-NITCIYDLDIIINPYNFNEVYIYEE-105)","display_uniquename":"Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-2","expression":"Not assayed or wild type"}]}]},"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sp(delta82-105)(Pmk1 from S. pombe with deleted residues 82-105 Δaa)","display_uniquename":"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-4","expression":"Not assayed or wild type"}]}]},"ago1delta__leo1delta":{"display_name":"ago1delta leo1delta","display_uniquename":"ago1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02621:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"dcr1delta":{"display_name":"dcr1delta","display_uniquename":"dcr1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]}]},"dcr1delta__leo1delta":{"display_name":"dcr1delta leo1delta","display_uniquename":"dcr1delta__leo1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03689:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03118:allele-1","expression":"Null"}]}]},"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]},"pck1delta":{"display_name":"pck1delta","display_uniquename":"pck1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]}]},"pck2delta":{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]},"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pyk1-A343T(aa)","display_uniquename":"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02796:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_02621","SJAG_03118","SJAG_03689"],"name":"cellular metabolism phenotype during vegetative growth","references_by_uniquename":{"PMID:34198697":null,"PMID:35226668":null,"PMID:36058798":null,"PMID:37164017":null},"single_locus_annotated_genes":["SJAG_04551","SJAG_03689","SJAG_04697","SJAG_01787","SJAG_02796","SJAG_00610"],"single_locus_genotype_uniquenames":["pck1delta","pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type","dcr1delta","Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","Pmk1Sj(ins82-105)-82-NITCIYDLDIIINPYNFNEVYIYEE-105-amino_acid_insertion-expression-not_assayed_or_wild_type","pck2delta","gms1delta"],"synonyms":[{"name":"cellular metabolism phenotype during mitotic cell cycle","type":"related"},{"name":"fission yeast cellular metabolism phenotype during vegetative growth","type":"exact"}],"termid":"FYPO:0001348","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000162":null,"FYPO:0001038":null,"FYPO:0001838":null,"FYPO:0002033":null,"FYPO:0003727":null,"FYPO:0004165":null,"FYPO:0006989":null,"FYPO_EXT:0000001":null}}


id: PBO:0082688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the GARP (Golgi-associated retrograde protein) complex; GARP is required for the recycling of proteins from endosomes to the late Golgi, and for mitosis after DNA damage induced checkpoint arrest; required for vacuolar protein sorting; members of the GARP complex are Vps51p-Vps52p-Vps53p-Vps54p; human ortholog is implicated in progressive cerebello-cerebral atrophy type 2 (PCCA2)","termid":"PBO:0082688"}


id: PBO:0045131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein axonemal assembly factor 1","termid":"PBO:0045131"}


id: FYPO:0005786
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which double-strand break processing extends for a shorter distance from the breaks site than normal. Double-strand break processing is the 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang.","definition_xrefs":["PomBase:mah","GO:0000729","PMID:27729451"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal double-strand break processing","termid":"FYPO:0002553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000293","FYPO:0000298","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased spatial extent of double-strand break processing","synonyms":[{"name":"decreased spatial extent of DSB processing","type":"exact"},{"name":"decreased spatial extent of double-strand break processing during mitotic cell cycle","type":"related"},{"name":"decreased spatial extent of double-strand break processing during vegetative growth","type":"exact"},{"name":"decreased spatial extent of double-strand break resection","type":"exact"},{"name":"reduced spatial extent of double-strand break processing","type":"exact"}],"termid":"FYPO:0005786"}


id: MONDO:0014722
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"immune system disorder","termid":"MONDO:0005046"},{"relation_name":"is_a","term_name":"spondyloepiphyseal dysplasia","termid":"MONDO:0016761"},{"relation_name":"is_a","term_name":"RNU4ATAC spectrum disorder","termid":"MONDO:0100558"},{"relation_name":"is_a","term_name":"primordial dwarfism and slender bone disorder","termid":"MONDO:0800063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005497"],"is_obsolete":false,"name":"Roifman syndrome","secondary_identifiers":["MESH:C535866","OMIM:300258","MEDGEN:375801","OMIM:616651","Orphanet:353298","UMLS:C1846059","GARD:9163"],"synonyms":[{"name":"RFMN","type":"exact"},{"name":"Roifman syndrome","type":"exact"},{"name":"spondyloepiphseal dysplasia, retinal dystrophy and antibody deficiency","type":"related"},{"name":"spondyloepiphyseal dysplasia, retinal dystrophy, and antibody deficiency","type":"exact"},{"name":"spondyloepiphyseal dysplasia-retinal dystrophy-immunodeficiency syndrome","type":"exact"}],"termid":"MONDO:0014722","xrefs":{"Monarch":{"xref_id":"0014722"}}}


id: GO:0050506
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-D-glucose + vomilenine = H+ + raucaffricine + UDP.","definition_xrefs":["EC:2.4.1.219","RHEA:19385"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016757","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"vomilenine glucosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.219-RXN","KEGG_REACTION:R05882"],"synonyms":[{"name":"UDP-glucose:vomilenine 21-O-beta-D-glucosyltransferase activity","type":"related"},{"name":"UDPG:vomilenine 21-beta-D-glucosyltransferase activity","type":"related"},{"name":"UDPG:vomilenine 21beta-D-glucosyltransferase activity","type":"related"},{"name":"vomilenine-glucosyltransferase activity","type":"related"}],"termid":"GO:0050506"}


id: GO:0120108
data:
  {"annotated_genes":["SJAG_04410"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[117529],"is_not":false,"summary":null,"term":"GO:0120108"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (DNA)-3'-diphospho-5'-guanosine + H2O = (DNA)-3'-phosphate + GMP.","definition_xrefs":["PMID:26007660","RHEA:52140"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04410":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"DNA-3'-diphospho-5'-guanosine diphosphatase","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:3.6.1.72"],"synonyms":[{"name":"DNA-3'pp5'G guanylate hydrolase","type":"exact"}],"termid":"GO:0120108","terms_by_termid":{"GO:0120108":null}}


id: GO:1904465
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of matrix metallopeptidase secretion.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:8679543"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein secretion","termid":"GO:0050709"},{"relation_name":"is_a","term_name":"regulation of matrix metallopeptidase secretion","termid":"GO:1904464"},{"relation_name":"negatively_regulates","term_name":"matrix metallopeptidase secretion","termid":"GO:1990773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of matrix metallopeptidase secretion","synonyms":[{"name":"down regulation of MMP secretion","type":"exact"},{"name":"down regulation of matrix metallopeptidase secretion","type":"exact"},{"name":"down regulation of matrix metalloproteinase secretion","type":"narrow"},{"name":"down-regulation of MMP secretion","type":"exact"},{"name":"down-regulation of matrix metallopeptidase secretion","type":"exact"},{"name":"down-regulation of matrix metalloproteinase secretion","type":"narrow"},{"name":"downregulation of MMP secretion","type":"exact"},{"name":"downregulation of matrix metallopeptidase secretion","type":"exact"},{"name":"downregulation of matrix metalloproteinase secretion","type":"narrow"},{"name":"inhibition of MMP secretion","type":"narrow"},{"name":"inhibition of matrix metallopeptidase secretion","type":"narrow"},{"name":"inhibition of matrix metalloproteinase secretion","type":"narrow"},{"name":"negative regulation of MMP secretion","type":"exact"},{"name":"negative regulation of matrix metalloproteinase secretion","type":"narrow"}],"termid":"GO:1904465"}


id: GO:0016943
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase I following transcription initiation.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA polymerase I transcription elongation factor activity (obsolete GO:0016943)","synonyms":[{"name":"Pol I transcription elongation factor activity","type":"exact"},{"name":"RNA polymerase I transcription elongation factor activity","type":"exact"}],"termid":"GO:0016943"}


id: GO:1901406
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of tetrapyrrole catabolic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catabolic process","termid":"GO:0009896"},{"relation_name":"is_a","term_name":"positive regulation of tetrapyrrole metabolic process","termid":"GO:1901403"},{"relation_name":"is_a","term_name":"regulation of tetrapyrrole catabolic process","termid":"GO:1901404"},{"relation_name":"positively_regulates","term_name":"tetrapyrrole catabolic process","termid":"GO:0033015"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0033013"},{"rel_name":"regulates","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"positive regulation of tetrapyrrole catabolic process","synonyms":[{"name":"activation of tetrapyrrole breakdown","type":"exact"},{"name":"activation of tetrapyrrole catabolic process","type":"narrow"},{"name":"activation of tetrapyrrole catabolism","type":"exact"},{"name":"activation of tetrapyrrole degradation","type":"exact"},{"name":"positive regulation of tetrapyrrole breakdown","type":"exact"},{"name":"positive regulation of tetrapyrrole catabolism","type":"exact"},{"name":"positive regulation of tetrapyrrole degradation","type":"exact"},{"name":"up regulation of tetrapyrrole breakdown","type":"exact"},{"name":"up regulation of tetrapyrrole catabolic process","type":"exact"},{"name":"up regulation of tetrapyrrole catabolism","type":"exact"},{"name":"up regulation of tetrapyrrole degradation","type":"exact"},{"name":"up-regulation of tetrapyrrole breakdown","type":"exact"},{"name":"up-regulation of tetrapyrrole catabolic process","type":"exact"},{"name":"up-regulation of tetrapyrrole catabolism","type":"exact"},{"name":"up-regulation of tetrapyrrole degradation","type":"exact"},{"name":"upregulation of tetrapyrrole breakdown","type":"exact"},{"name":"upregulation of tetrapyrrole catabolic process","type":"exact"},{"name":"upregulation of tetrapyrrole catabolism","type":"exact"},{"name":"upregulation of tetrapyrrole degradation","type":"exact"}],"termid":"GO:1901406"}


id: PBO:0061653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear FMR1 interacting protein 1","termid":"PBO:0061653"}


id: GO:0120295
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-glutaminyl-[histone] + serotonin = 5-serotonyl-L-glutamyl-[histone] + NH4(+).","definition_xrefs":["PMID:30867594","GOC:sp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide serotonyltransferase activity","termid":"GO:0120294"},{"relation_name":"is_a","term_name":"histone modifying activity","termid":"GO:0140993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016746","GO:0140096"],"is_obsolete":false,"name":"histone serotonyltransferase activity","termid":"GO:0120295"}


id: PBO:0069848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1134, pseudogene","termid":"PBO:0069848"}


id: MONDO:0004720
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A orthopoxvirus that causes a milder clinical syndrome than smallpox.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"smallpox","termid":"MONDO:0004651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"variola minor infection","secondary_identifiers":["SCTID:72294005","UMLS:C0001906","ICD9:050.1","MEDGEN:1393","NCIT:C34365","DOID:9153"],"synonyms":[{"name":"Variola minor","type":"exact"},{"name":"alastrim","type":"exact"},{"name":"cottonpox","type":"exact"},{"name":"milkpox","type":"exact"},{"name":"whitepox","type":"exact"}],"termid":"MONDO:0004720","xrefs":{"Monarch":{"xref_id":"0004720"}}}


id: FYPO:0002623
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to a glucose stimulus is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased RNA level during cellular response to glucose stimulus","synonyms":[{"name":"decreased RNA accumulation during cellular response to glucose stimulus","type":"related"},{"name":"decreased RNA level during cellular response to glucose","type":"exact"},{"name":"decreased RNA level during cellular response to glucose stimulus during mitotic cell cycle","type":"related"},{"name":"decreased RNA level during cellular response to glucose stimulus during vegetative growth","type":"exact"},{"name":"decreased mRNA level during cellular response to glucose stimulus","type":"narrow"},{"name":"decreased transcript level during cellular response to glucose stimulus","type":"exact"},{"name":"reduced RNA level during cellular response to glucose stimulus","type":"exact"}],"termid":"FYPO:0002623"}


id: MONDO:0044265
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete tooth size (obsolete MONDO:0044265)","secondary_identifiers":["OMIM:314240"],"synonyms":[{"name":"tooth size","type":"related"}],"termid":"MONDO:0044265","xrefs":{"Monarch":{"xref_id":"0044265"}}}


id: MONDO:0001644
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the glomeruli status post infection with nephritogenic streptococci, most often group A beta hemolytic streptococcus.","definition_xrefs":["NCIT:C35443"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proliferative glomerulonephritis","termid":"MONDO:0003134"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"acute proliferative glomerulonephritis","secondary_identifiers":["ICD9:580.0","SCTID:197579006","DOID:13138","MEDGEN:574582","UMLS:C0341692"],"synonyms":[{"name":"acute glomerulonephritis with lesion of proliferative glomerulonephritis","type":"exact"},{"name":"post-streptococcal glomerulonephritis","type":"exact"},{"name":"proliferative glomerulonephritis, acute","type":"exact"}],"termid":"MONDO:0001644","xrefs":{"Monarch":{"xref_id":"0001644"}}}


id: PBO:0028671
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_number_of_Sad1_foci_during_response_to_DNA_damage","termid":"PBO:0028671"}


id: PBO:0002795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic recombination protein Rec24","termid":"PBO:0002795"}


id: GO:0019750
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a chloroplast is transported to, and/or maintained in, a specific location within the cell. A chloroplast is a chlorophyll-containing plastid found in cells of algae and higher plants.","definition_xrefs":["ISBN:0198506732","GOC:jl","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid localization","termid":"GO:0051644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"chloroplast localization","synonyms":[{"name":"chloroplast localisation","type":"exact"}],"termid":"GO:0019750"}


id: GO:0008420
data:
  {"annotated_genes":["SJAG_02203","SJAG_02389","SJAG_03126","SJAG_01286","SJAG_03624"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[68610,81547],"is_not":false,"summary":null,"term":"GO:0008420"},{"annotations":[98971,97620],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180007"},{"annotations":[113800],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180005"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: RNA polymerase II large subunit CTD heptapeptide repeat--phospho-L-serine/threonine (consensus YSPTSPS) + H2O = RNA polymerase II large subunit + phosphate.","definition_xrefs":["PMID:22622228"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine phosphatase activity","termid":"GO:0004722"},{"relation_name":"is_a","term_name":"RNA polymerase II CTD heptapeptide repeat modifying activity","termid":"GO:0140994"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01286":null,"SJAG_02203":null,"SJAG_02389":null,"SJAG_03126":null,"SJAG_03624":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0004721"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0140096","GO:0016788","GO:0003674","GO:0004721"],"is_obsolete":false,"name":"RNA polymerase II CTD heptapeptide repeat phosphatase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"CTD phosphatase activity","type":"exact"},{"name":"RNA polymerase II carboxy-terminal domain phosphatase activity","type":"exact"}],"termid":"GO:0008420","terms_by_termid":{"GO:0008420":null,"GO:0180005":null,"GO:0180007":null}}


id: GO:0048936
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Generation of a long process from a neuron whose cell body resides in the peripheral nervous system. The axon carries action potential from the cell body towards target cells.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axonogenesis","termid":"GO:0007409"},{"relation_name":"part_of","term_name":"peripheral nervous system neuron development","termid":"GO:0048935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peripheral nervous system neuron axonogenesis","termid":"GO:0048936"}


id: MONDO:0003278
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm involving the internal ear.","direct_ancestors":[{"relation_name":"is_a","term_name":"malignant ear neoplasm","termid":"MONDO:0003277"},{"relation_name":"is_a","term_name":"auditory system cancer","termid":"MONDO:0004532"},{"relation_name":"is_a","term_name":"inner ear neoplasm","termid":"MONDO:0024320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"inner ear cancer","secondary_identifiers":["NCIT:C39784","DOID:5102"],"synonyms":[{"name":"cancer of internal ear","type":"exact"},{"name":"internal ear cancer","type":"exact"},{"name":"malignant internal ear neoplasm","type":"exact"},{"name":"malignant neoplasm of internal ear","type":"exact"}],"termid":"MONDO:0003278","xrefs":{"Monarch":{"xref_id":"0003278"}}}


id: PBO:0116297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleosome spacing factor; subunit of INO80 chromatin remodeling complex; involved in positioning and spacing of nucleosomes over most genes independently of transcription; promotes nucleosome shifts in the 3' direction; has a role in modulating stress gene transcription","termid":"PBO:0116297"}


id: MONDO:0100041
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A type of trimethylaminuria that occurs as the result of treatment with large doses of dietary precursors of the offending chemical. Symptoms develop when the ability of the liver enzyme (flavin-containing monooxygenase 3) is insufficient to break down (metabolize) the excess trimethylamine.","direct_ancestors":[{"relation_name":"is_a","term_name":"trimethylaminuria","termid":"MONDO:0011182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"secondary trimethylaminuria","termid":"MONDO:0100041","xrefs":{"Monarch":{"xref_id":"0100041"}}}


id: PBO:0027421
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_nuclear_5'-3'_exonucleolytic_mRNA_catabolic_process","termid":"PBO:0027421"}


id: GO:0009813
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton.","definition_xrefs":["ISBN:0198547684","GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"flavonoid metabolic process","termid":"GO:0009812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"flavonoid biosynthetic process","secondary_identifiers":["MetaCyc:PWY1F-FLAVSYN","Wikipedia:Flavonoid"],"synonyms":[{"name":"flavonoid anabolism","type":"exact"},{"name":"flavonoid biosynthesis","type":"exact"},{"name":"flavonoid formation","type":"exact"},{"name":"flavonoid synthesis","type":"exact"}],"termid":"GO:0009813"}


id: MONDO:0019094
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital Epstein-Barr virus (EBV) infection causes no clinical manifestations in the majority of infants. Indeed, the occurrence of congenital infection with EBV has never been demonstrated conclusively and must be very rare. One case have been reported to present after birth, multiple congenital anomalies (micrognathia, cryptorchidism, central cataracts), dystrophy, generalized hypotonia, hepatosplenomegaly, diffuse petechiae and hematomas and multiple areas of metaphysitis of the long bones at birth. A low birth weight was also reported. No specific follow-up of the fetus is recommended following maternal EBV primary-infection.","definition_xrefs":["Orphanet:70596"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral infectious disease","termid":"MONDO:0005108"},{"relation_name":"is_a","term_name":"infectious embryofetopathy","termid":"MONDO:0016511"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital Epstein-Barr virus infection","secondary_identifiers":["MEDGEN:908580","icd11.foundation:1861788994","GARD:18903","SCTID:716660007","UMLS:C4274357"],"synonyms":[{"name":"antenatal EBV infection","type":"exact"},{"name":"antenatal Epstein-Barr virus infection","type":"exact"},{"name":"congenital EBV infection","type":"exact"},{"name":"mother-to-child transmission of Epstein-Barr virus infection","type":"exact"}],"termid":"MONDO:0019094","xrefs":{"Monarch":{"xref_id":"0019094"}}}


id: PBO:0065029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin 5","termid":"PBO:0065029"}


id: PBO:0065929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rac family small GTPase 1 pseudogene 3","termid":"PBO:0065929"}


id: PBO:0030567
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_alanine_level","termid":"PBO:0030567"}


id: GO:2000395
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ubiquitin-dependent endocytosis.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endocytosis","termid":"GO:0030100"},{"relation_name":"is_a","term_name":"regulation of protein transport","termid":"GO:0051223"},{"relation_name":"regulates","term_name":"ubiquitin-dependent endocytosis","termid":"GO:0070086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"regulation of ubiquitin-dependent endocytosis","synonyms":[{"name":"regulation of ubiquitin-mediated endocytosis","type":"exact"}],"termid":"GO:2000395"}


id: MONDO:0015422
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Orofaciodigital syndrome type 13 is a rare subtype of orofaciodigital syndrome, with sporadic occurrence, characterized by cardiac (mitral and tricuspid valve dysplasia) and neuropsychiatric manifestations (epilepsy, depression), in addition to oral, facial and digital malformations (lingual hamartomas, cleft lip, and brachydactyly, clinodactyly, syndactyly of hands and feet). Leukoaraiosis, on brain MRI examination, is also associated.","definition_xrefs":["Orphanet:141330"],"gene_count":0,"genotype_count":0,"name":"obsolete orofaciodigital syndrome type 13 (obsolete MONDO:0015422)","secondary_identifiers":["GARD:10694","SCTID:763835004","MESH:C548035"],"synonyms":[{"name":"Degner syndrome","type":"exact"},{"name":"OFD syndrome 13","type":"related"},{"name":"OFD13","type":"exact"},{"name":"OFDS 13","type":"related"},{"name":"oral facial digital syndrome 13","type":"related"},{"name":"oral facial digital syndrome type 13","type":"related"},{"name":"oral-facial-digital syndrome 13","type":"related"},{"name":"oral-facial-digital syndrome XIII","type":"related"},{"name":"oral-facial-digital syndrome type 13","type":"exact"},{"name":"orofaciodigital syndrome 13","type":"related"},{"name":"orofaciodigital syndrome XIII","type":"related"}],"termid":"MONDO:0015422","xrefs":{"Monarch":{"xref_id":"0015422"}}}


id: MONDO:0016309
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Niemann-Pick disease type C","termid":"MONDO:0018982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0002561","MONDO:0005046","MONDO:0005066","MONDO:0002525"],"is_obsolete":false,"name":"Niemann-Pick disease type C, juvenile neurologic onset","secondary_identifiers":["Orphanet:216981","icd11.foundation:2006062681","UMLS:C5679813","GARD:20507","MEDGEN:1842257"],"synonyms":[{"name":"Niemann-Pick disease type C, classic form","type":"exact"}],"termid":"MONDO:0016309","xrefs":{"Monarch":{"xref_id":"0016309"}}}


id: GO:0009398
data:
  {"annotated_genes":["SJAG_04845"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74526],"is_not":false,"summary":null,"term":"GO:0009398"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of FMN, the oxidized form of flavin mononucleotide (riboflavin 5'-(dihydrogen phosphate)), which acts as a coenzyme for a number of oxidative enzymes including NADH dehydrogenase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoside monophosphate biosynthetic process","termid":"GO:0009156"},{"relation_name":"is_a","term_name":"ribonucleotide biosynthetic process","termid":"GO:0009260"},{"relation_name":"is_a","term_name":"flavin-containing compound biosynthetic process","termid":"GO:0042727"},{"relation_name":"is_a","term_name":"FMN metabolic process","termid":"GO:0046444"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04845":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"FMN biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"FMN anabolism","type":"exact"},{"name":"FMN biosynthesis","type":"exact"},{"name":"FMN formation","type":"exact"},{"name":"FMN synthesis","type":"exact"}],"termid":"GO:0009398","terms_by_termid":{"GO:0009398":null}}


id: PBO:0047310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid synthase","termid":"PBO:0047310"}


id: PATO:0002457
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's similarity to the appearance of a leaf.","definition_xrefs":["PATOC:JL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leaf-like","termid":"PATO:0002457"}


id: GO:0071387
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cortisol stimulus. Cortisol is the major natural glucocorticoid synthesized in the zona fasciculata of the adrenal cortex; it affects the metabolism of glucose, protein, and fats and has appreciable mineralocorticoid activity. It also regulates the immune system and affects many other functions.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cortisol","termid":"GO:0051414"},{"relation_name":"is_a","term_name":"cellular response to glucocorticoid stimulus","termid":"GO:0071385"},{"relation_name":"is_a","term_name":"cellular response to alcohol","termid":"GO:0097306"},{"relation_name":"is_a","term_name":"cellular response to ketone","termid":"GO:1901655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to cortisol stimulus","synonyms":[{"name":"cellular response to hydrocortisone stimulus","type":"exact"}],"termid":"GO:0071387"}


id: PBO:0090132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol polyphosphate IP3/IP4 kinase Arg82","termid":"PBO:0090132"}


id: RO:0002224
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x starts with y if and only if x has part y and the time point at which x starts is equivalent to the time point at which y starts. Formally: α(y) = α(x) ∧ ω(y) < ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.","direct_ancestors":[{"relation_name":"is_a","term_name":"has_part","termid":"BFO:0000051"},{"relation_name":"is_a","term_name":"temporally_related_to","termid":"RO:0002222"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"starts_with","termid":"RO:0002224"}


id: MONDO:0003234
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A astrocytoma (excluding glioblastoma) that involves the cranial nerve II.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant cranial nerve neoplasm","termid":"MONDO:0002433"},{"relation_name":"is_a","term_name":"optic nerve glioma","termid":"MONDO:0003235"},{"relation_name":"is_a","term_name":"optic tract astrocytoma","termid":"MONDO:0024649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"optic nerve astrocytoma","secondary_identifiers":["NCIT:C6769","MEDGEN:235405","NCIT:C7533","UMLS:C1335114","DOID:4991"],"synonyms":[{"name":"astrocytic tumor of optic nerve","type":"exact"},{"name":"astrocytic tumour of optic nerve","type":"exact"},{"name":"astrocytoma (excluding glioblastoma) of cranial nerve II","type":"exact"},{"name":"astrocytoma of optic nerve","type":"exact"},{"name":"astrocytoma of the optic nerve","type":"exact"},{"name":"cranial nerve II astrocytoma (excluding glioblastoma)","type":"exact"},{"name":"optic nerve astrocytoma","type":"exact"},{"name":"optic tract astrocytoma","type":"related"},{"name":"optic tract astrocytoma (excluding glioblastoma)","type":"related"}],"termid":"MONDO:0003234","xrefs":{"Monarch":{"xref_id":"0003234"}}}


id: PATO:0002423
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A round or lobulated protruding form resembling a nipple.","definition_xrefs":["PATOC:MPATH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"papillomatous","termid":"PATO:0002423"}


id: MONDO:0020553
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Secondary pulmonary hemosiderosis is a respiratory disease due to the deposition of hemosiderin-laden macrophages in lungs as a result of repeated alveolar hemorrhage secondary to another disease, especially dysimmunitary disorders (i.e. Heiner syndrome, autoimmune diseases), thrombotic disorders and cardiovascular disorders such as mitral stenosis. It manifests as a triad of hemoptysis, anemia and diffuse parenchymal infiltrates on chest radiography","definition_xrefs":["Orphanet:99930"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interstitial lung disease","termid":"MONDO:0015925"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secondary pulmonary hemosiderosis","secondary_identifiers":["ICD10EXP:J99.8*","SCTID:716712004","MEDGEN:909854","UMLS:C4274326","GARD:19713","ICD10EXP:E83.1+","icd11.foundation:878618614"],"termid":"MONDO:0020553","xrefs":{"Monarch":{"xref_id":"0020553"}}}


id: GO:0004462
data:
  {"annotated_genes":["SJAG_04726"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[69718],"is_not":false,"summary":null,"term":"GO:0004462"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-S-lactoylglutathione = glutathione + methylglyoxal.","definition_xrefs":["EC:4.4.1.5","RHEA:19069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-sulfur lyase activity","termid":"GO:0016846"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04726":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"lactoylglutathione lyase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["MetaCyc:GLYOXI-RXN","Reactome:R-HSA-5694071","KEGG_REACTION:R02530"],"synonyms":[{"name":"(R)-S-lactoylglutathione methylglyoxal-lyase (isomerizing) activity","type":"related"},{"name":"(R)-S-lactoylglutathione methylglyoxal-lyase (isomerizing; glutathione-forming)","type":"related"},{"name":"aldoketomutase activity","type":"related"},{"name":"glyoxalase I activity","type":"related"},{"name":"glyoxylase I","type":"related"},{"name":"ketone-aldehyde mutase activity","type":"related"},{"name":"methylglyoxalase activity","type":"related"}],"termid":"GO:0004462","terms_by_termid":{"GO:0004462":null}}


id: PBO:0061147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-myc and STAT interactor","termid":"PBO:0061147"}


id: FYPO:0003836
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of RNA polymerase II carboxy-terminal domain kinase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein kinase activity","termid":"FYPO:0001382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000652","FYPO:0000661","FYPO:0000654"],"is_obsolete":false,"name":"decreased RNA polymerase II carboxy-terminal domain kinase activity","synonyms":[{"name":"reduced RNA polymerase II carboxy-terminal domain kinase activity","type":"exact"}],"termid":"FYPO:0003836"}


id: PR:Q9USP0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC11E10.07c gene.","definition_xrefs":["UniProtKB:Q9USP0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF-2B subunit alpha (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC11E10.07c","synonyms":[{"name":"Spom972h-SPCC11E10.07c","type":"exact"},{"name":"eIF-2B GDP-GTP exchange factor subunit alpha (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USP0"}


id: PBO:0077557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM263 divergent transcript","termid":"PBO:0077557"}


id: PBO:0031583
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-growth_auxotrophic_for_leucine","termid":"PBO:0031583"}


id: PBO:0053806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1065","termid":"PBO:0053806"}


id: MONDO:0008389
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant Robinow syndrome (DRS) is the more common type of Robinow syndrome (RS) characterized by mild to moderate limb shortening and abnormalities of the head, face and external genitalia.","definition_xrefs":["Orphanet:3107"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"Robinow syndrome","termid":"MONDO:0019978"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"autosomal dominant Robinow syndrome","secondary_identifiers":["GARD:16620","MEDGEN:1675001","icd11.foundation:807338758","SCTID:76520005","UMLS:C5200540","ICD9:759.89"],"synonyms":[{"name":"Robinow syndrome, autosomal dominant","type":"exact"},{"name":"Robinow syndrome, autosomal dominant type","type":"exact"},{"name":"autosomal dominant Robinow syndrome","type":"exact"}],"termid":"MONDO:0008389","xrefs":{"Monarch":{"xref_id":"0008389"}}}


id: PBO:0000805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase III complex subunit Rpc11","termid":"PBO:0000805"}


id: PR:Q10324
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sec3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10324"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C17G8.12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17G8.12","synonyms":[{"name":"Spom972h-sec3","type":"exact"}],"termid":"PR:Q10324"}


id: GO:0036181
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular protein localization process in which a protein is transported to, or maintained at, a linear element. A linear element is a proteinaceous scaffold associated with S. pombe chromosomes during meiotic prophase.","definition_xrefs":["GOC:mah","PMID:19756689"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to condensed nuclear chromosome","termid":"GO:1903084"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to linear element","synonyms":[{"name":"protein localisation to linear element","type":"exact"}],"termid":"GO:0036181"}


id: GO:0051431
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a corticotropin-releasing hormone receptor type 2 (CRHR2). The CRHR2 has several splice variants that are located in sub-cortical areas of the brain and in the periphery.","definition_xrefs":["PMID:15134857"],"direct_ancestors":[{"relation_name":"is_a","term_name":"corticotropin-releasing hormone receptor binding","termid":"GO:0051429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"corticotropin-releasing hormone receptor 2 binding","secondary_identifiers":["GO:0031744"],"synonyms":[{"name":"CRHR2 binding","type":"exact"},{"name":"type 2 corticotropin releasing factor receptor binding","type":"exact"},{"name":"type 2 corticotropin releasing factor receptor ligand","type":"narrow"},{"name":"type 2 corticotropin-releasing factor receptor binding","type":"exact"}],"termid":"GO:0051431"}


id: GO:0045683
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of epidermis development.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epidermis development","termid":"GO:0045682"},{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"negatively_regulates","term_name":"epidermis development","termid":"GO:0008544"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of epidermis development","synonyms":[{"name":"down regulation of epidermis development","type":"exact"},{"name":"down-regulation of epidermis development","type":"exact"},{"name":"downregulation of epidermis development","type":"exact"},{"name":"inhibition of epidermis development","type":"narrow"},{"name":"negative regulation of epidermal development","type":"exact"},{"name":"negative regulation of hypodermis development","type":"related"}],"termid":"GO:0045683"}


id: GO:0030074
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A thylakoid; as in, but not restricted to, the purple bacteria and relatives (Proteobacteria, ncbi_taxonomy_id:1224).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete thylakoid (sensu Proteobacteria) (obsolete GO:0030074)","synonyms":[{"name":"thylakoid (sensu Proteobacteria)","type":"exact"}],"termid":"GO:0030074"}


id: PBO:0088651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"19S proteasome regulatory subunit Rpn8","termid":"PBO:0088651"}


id: GO:0046424
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ferulic acid + NADPH + H+ + O2 = 5-hydroxyferulic acid + H2O + NADP+.","definition_xrefs":["PMID:9880351","PMID:8692910"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on NAD(P)H","termid":"GO:0016651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"ferulate 5-hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-1121"],"termid":"GO:0046424"}


id: MONDO:1012906
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any muscular dystrophy that occurs in dogs due to a mutation in the LAMA2 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy, dog","termid":"MONDO:1010911"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital muscular dystrophy, LAMA2-related, dog","secondary_identifiers":["OMIA:002459-9615"],"termid":"MONDO:1012906","xrefs":{"Monarch":{"xref_id":"1012906"}}}


id: GO:0006310
data:
  {"annotated_genes":["SJAG_03454","SJAG_00796","SJAG_02226","SJAG_05295","SJAG_04950","SJAG_02339","SJAG_00823","SJAG_05180","SJAG_00805","SJAG_02465","SJAG_03926","SJAG_02058","SJAG_07002","SJAG_01044","SJAG_04995","SJAG_05333","SJAG_01419","SJAG_01832","SJAG_03048","SJAG_03941","SJAG_02262","SJAG_02181","SJAG_02267","SJAG_01495","SJAG_05323","SJAG_01776","SJAG_00247","SJAG_04971","SJAG_01173","SJAG_03699","SJAG_00980","SJAG_01332","SJAG_00757","SJAG_03567","SJAG_00475","SJAG_05373","SJAG_02311","SJAG_03051","SJAG_03525","SJAG_03221","SJAG_04932","SJAG_04183","SJAG_00153","SJAG_02592","SJAG_03898","SJAG_05232","SJAG_00100","SJAG_00727","SJAG_03780","SJAG_04748","SJAG_01410","SJAG_01076","SJAG_02348","SJAG_01354","SJAG_00908","SJAG_00623","SJAG_02616","SJAG_02295","SJAG_01698","SJAG_01401","SJAG_02556","SJAG_MIT05","SJAG_04530","SJAG_MIT06","SJAG_04210","SJAG_03751","SJAG_01156","SJAG_00213","SJAG_02294","SJAG_01138","SJAG_06597","SJAG_00327","SJAG_03722","SJAG_01601","SJAG_02490","SJAG_01067","SJAG_03160","SJAG_03702","SJAG_05105","SJAG_02690","SJAG_03728","SJAG_05237","SJAG_03219","SJAG_00696","SJAG_00640","SJAG_00198","SJAG_02822","SJAG_03994","SJAG_01762","SJAG_02828","SJAG_02299","SJAG_06642","SJAG_00995","SJAG_02575","SJAG_05239","SJAG_01573","SJAG_02527","SJAG_05173","SJAG_00884","SJAG_02079","SJAG_00172","SJAG_05353","SJAG_04816","SJAG_01205","SJAG_04150","SJAG_00266","SJAG_02545","SJAG_00935","SJAG_03068","SJAG_00377","SJAG_04205","SJAG_02460","SJAG_01708","SJAG_MIT07","SJAG_02724","SJAG_03438","SJAG_02652","SJAG_01677","SJAG_00857","SJAG_00177","SJAG_03436","SJAG_02708","SJAG_01221","SJAG_03026","SJAG_04372","SJAG_03855","SJAG_04303","SJAG_03720","SJAG_05280","SJAG_01624","SJAG_01652","SJAG_03097"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57725,59132,60133,71180,111788,114665],"is_not":false,"summary":null,"term":"GO:0006310"},{"annotations":[109784],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0010846"},{"annotations":[66904,77465,66068,76791,73992],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000730"},{"annotations":[73994,98695],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0042148"},{"annotations":[118642,109473,100838,90934,90310],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990918"},{"annotations":[72641,76414,81665,81947,113865,76020,75124,75085,79963,101063,71602,73669,79073],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000727"},{"annotations":[107543,105661,113321,118643,76614,72240,81210,72964,118092,78885,76076,71903,79796,96656,90162,98464,119568,78866,79463,89810,76953,105948,90935,79361,104993,108112,74180,75923,98877,81979,113559,81205,80625,92636,102962,81085,102400,109560,119711,72606],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000724"},{"annotations":[79746,119291,72724,109962],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045003"},{"annotations":[90937,120630,118645,99202,100902,91065,116863,108444,110329,112125,102370,112648,89698,107877,97959],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007534"},{"annotations":[57828],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035825"},{"annotations":[120913,120905,120912],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006314"},{"annotations":[92108,112958,111469,110565,106683],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010780"},{"annotations":[80243],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000707"},{"annotations":[109475,112127],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010772"},{"annotations":[91066,102336],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006311"},{"annotations":[80519,90251,103318,98698,118951,109476,112128,64137],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000709"},{"annotations":[102434],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902346"},{"annotations":[109477,112129,100841],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000708"},{"annotations":[80522,102338,90252],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010774"},{"annotations":[81089],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097552"},{"annotations":[73995,77469,76795,78829,105662,109565],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006312"},{"annotations":[109787],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0045128"},{"annotations":[112754],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905168"},{"annotations":[110177,104175],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1905263"},{"annotations":[81067],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0045951"},{"annotations":[90833],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0010845"},{"annotations":[92575,106647,102935,117381,94452,91370,72723,79466,81071,102436,102373,94525,105663,106126,108537,70858,93243],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007131"},{"annotations":[106222],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045458"},{"annotations":[100844,113417,102437,104995],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036298"},{"annotations":[92576,79348,104127,77102,99278],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000725"},{"annotations":[112150,110901],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0000018"},{"annotations":[111140],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0010569"},{"annotations":[90941,96152,118126,118922,103419],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0010520"},{"annotations":[71612,76710,76943],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990414"},{"annotations":[112151,119146,109964,76613,110903,78519,73430,119294,76019,80999],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000712"},{"annotations":[97799],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071140"},{"annotations":[118074],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0062209"},{"annotations":[114784,113565,114785,114781,97965,81917,114782,114783],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000722"}]},"cv_name":"biological_process","definition":"Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolic process","termid":"GO:0006259"}],"gene_count":132,"genes_by_uniquename":{"SJAG_00100":null,"SJAG_00153":null,"SJAG_00172":null,"SJAG_00177":null,"SJAG_00198":null,"SJAG_00213":null,"SJAG_00247":null,"SJAG_00266":null,"SJAG_00327":null,"SJAG_00377":null,"SJAG_00475":null,"SJAG_00623":null,"SJAG_00640":null,"SJAG_00696":null,"SJAG_00727":null,"SJAG_00757":null,"SJAG_00796":null,"SJAG_00805":null,"SJAG_00823":null,"SJAG_00857":null,"SJAG_00884":null,"SJAG_00908":null,"SJAG_00935":null,"SJAG_00980":null,"SJAG_00995":null,"SJAG_01044":null,"SJAG_01067":null,"SJAG_01076":null,"SJAG_01138":null,"SJAG_01156":null,"SJAG_01173":null,"SJAG_01205":null,"SJAG_01221":null,"SJAG_01332":null,"SJAG_01354":null,"SJAG_01401":null,"SJAG_01410":null,"SJAG_01419":null,"SJAG_01495":null,"SJAG_01573":null,"SJAG_01601":null,"SJAG_01624":null,"SJAG_01652":null,"SJAG_01677":null,"SJAG_01698":null,"SJAG_01708":null,"SJAG_01762":null,"SJAG_01776":null,"SJAG_01832":null,"SJAG_02058":null,"SJAG_02079":null,"SJAG_02181":null,"SJAG_02226":null,"SJAG_02262":null,"SJAG_02267":null,"SJAG_02294":null,"SJAG_02295":null,"SJAG_02299":null,"SJAG_02311":null,"SJAG_02339":null,"SJAG_02348":null,"SJAG_02460":null,"SJAG_02465":null,"SJAG_02490":null,"SJAG_02527":null,"SJAG_02545":null,"SJAG_02556":null,"SJAG_02575":null,"SJAG_02592":null,"SJAG_02616":null,"SJAG_02652":null,"SJAG_02690":null,"SJAG_02708":null,"SJAG_02724":null,"SJAG_02822":null,"SJAG_02828":null,"SJAG_03026":null,"SJAG_03048":null,"SJAG_03051":null,"SJAG_03068":null,"SJAG_03097":null,"SJAG_03160":null,"SJAG_03219":null,"SJAG_03221":null,"SJAG_03436":null,"SJAG_03438":null,"SJAG_03454":null,"SJAG_03525":null,"SJAG_03567":null,"SJAG_03699":null,"SJAG_03702":null,"SJAG_03720":null,"SJAG_03722":null,"SJAG_03728":null,"SJAG_03751":null,"SJAG_03780":null,"SJAG_03855":null,"SJAG_03898":null,"SJAG_03926":null,"SJAG_03941":null,"SJAG_03994":null,"SJAG_04150":null,"SJAG_04183":null,"SJAG_04205":null,"SJAG_04210":null,"SJAG_04303":null,"SJAG_04372":null,"SJAG_04530":null,"SJAG_04748":null,"SJAG_04816":null,"SJAG_04932":null,"SJAG_04950":null,"SJAG_04971":null,"SJAG_04995":null,"SJAG_05105":null,"SJAG_05173":null,"SJAG_05180":null,"SJAG_05232":null,"SJAG_05237":null,"SJAG_05239":null,"SJAG_05280":null,"SJAG_05295":null,"SJAG_05323":null,"SJAG_05333":null,"SJAG_05353":null,"SJAG_05373":null,"SJAG_06597":null,"SJAG_06642":null,"SJAG_07002":null,"SJAG_MIT05":null,"SJAG_MIT06":null,"SJAG_MIT07":null},"genotype_count":0,"in_subsets":["bp_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006259"],"is_obsolete":false,"name":"DNA recombination","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"termid":"GO:0006310","terms_by_termid":{"GO:0000018":null,"GO:0000707":null,"GO:0000708":null,"GO:0000709":null,"GO:0000712":null,"GO:0000722":null,"GO:0000724":null,"GO:0000725":null,"GO:0000727":null,"GO:0000730":null,"GO:0006310":null,"GO:0006311":null,"GO:0006312":null,"GO:0006314":null,"GO:0007131":null,"GO:0007534":null,"GO:0010520":null,"GO:0010569":null,"GO:0010772":null,"GO:0010774":null,"GO:0010780":null,"GO:0010845":null,"GO:0010846":null,"GO:0035825":null,"GO:0036298":null,"GO:0042148":null,"GO:0045003":null,"GO:0045128":null,"GO:0045458":null,"GO:0045951":null,"GO:0062209":null,"GO:0071140":null,"GO:0097552":null,"GO:1902346":null,"GO:1905168":null,"GO:1905263":null,"GO:1990414":null,"GO:1990918":null}}


id: MONDO:0002879
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary malignant neoplasm of the uterine corpus characterized by the presence of an epithelial and a mesenchymal component. This category includes carcinosarcoma, carcinofibroma, and adenosarcoma.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant mixed neoplasm","termid":"MONDO:0005853"},{"relation_name":"is_a","term_name":"uterine corpus cancer","termid":"MONDO:0006003"},{"relation_name":"is_a","term_name":"uterine corpus mixed epithelial and mesenchymal neoplasm","termid":"MONDO:0016255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"uterine body mixed cancer","secondary_identifiers":["UMLS:C1334628","DOID:4114","NCIT:C6311","MEDGEN:233163"],"synonyms":[{"name":"malignant body of uterus mixed neoplasm","type":"exact"},{"name":"malignant body of uterus mixed tumor","type":"exact"},{"name":"malignant body of uterus mixed tumour","type":"exact"},{"name":"malignant corpus uteri mixed neoplasm","type":"exact"},{"name":"malignant corpus uteri mixed tumor","type":"exact"},{"name":"malignant corpus uteri mixed tumour","type":"exact"},{"name":"malignant mixed neoplasm of body of uterus","type":"exact"},{"name":"malignant mixed neoplasm of corpus uteri","type":"exact"},{"name":"malignant mixed neoplasm of the body of uterus","type":"exact"},{"name":"malignant mixed neoplasm of the corpus uteri","type":"exact"},{"name":"malignant mixed neoplasm of the uterine body","type":"exact"},{"name":"malignant mixed neoplasm of the uterine corpus","type":"exact"},{"name":"malignant mixed neoplasm of uterine body","type":"exact"},{"name":"malignant mixed neoplasm of uterine corpus","type":"exact"},{"name":"malignant mixed tumor of body of uterus","type":"exact"},{"name":"malignant mixed tumor of corpus uteri","type":"exact"},{"name":"malignant mixed tumor of the body of uterus","type":"exact"},{"name":"malignant mixed tumor of the corpus uteri","type":"exact"},{"name":"malignant mixed tumor of the uterine body","type":"exact"},{"name":"malignant mixed tumor of the uterine corpus","type":"exact"},{"name":"malignant mixed tumor of uterine body","type":"exact"},{"name":"malignant mixed tumor of uterine corpus","type":"exact"},{"name":"malignant mixed tumour of body of uterus","type":"exact"},{"name":"malignant mixed tumour of corpus uteri","type":"exact"},{"name":"malignant mixed tumour of the body of uterus","type":"exact"},{"name":"malignant mixed tumour of the corpus uteri","type":"exact"},{"name":"malignant mixed tumour of the uterine body","type":"exact"},{"name":"malignant mixed tumour of the uterine corpus","type":"exact"},{"name":"malignant mixed tumour of uterine body","type":"exact"},{"name":"malignant mixed tumour of uterine corpus","type":"exact"},{"name":"malignant uterine body mixed neoplasm","type":"exact"},{"name":"malignant uterine body mixed tumor","type":"exact"},{"name":"malignant uterine body mixed tumour","type":"exact"},{"name":"malignant uterine corpus mixed epithelial and mesenchymal neoplasm","type":"exact"},{"name":"malignant uterine corpus mixed tumor","type":"exact"},{"name":"malignant uterine corpus mixed tumour","type":"exact"}],"termid":"MONDO:0002879","xrefs":{"Monarch":{"xref_id":"0002879"}}}


id: PBO:0055567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3003","termid":"PBO:0055567"}


id: PBO:0044354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 41","termid":"PBO:0044354"}


id: PBO:0078883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily V member 6","termid":"PBO:0078883"}


id: PBO:0045270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynamin 1 pseudogene 17","termid":"PBO:0045270"}


id: MONDO:0010746
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thumbs, congenital Clasped","secondary_identifiers":["MEDGEN:98140","UMLS:C0431886","OMIM:314100"],"synonyms":[{"name":"Clasped thumbs, congenital","type":"related"},{"name":"adducted thumbs syndrome","type":"related"},{"name":"thumbs, congenital Clasped","type":"exact"}],"termid":"MONDO:0010746","xrefs":{"Monarch":{"xref_id":"0010746"}}}


id: SO:0002118
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A polymorphic pseudogene transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon. Premature stop codon is not introduced, directly or indirectly, as a result of the variation i.e. must be present in both protein_coding and pseudogenic alleles.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NMD_transcript","termid":"SO:0002114"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NMD_polymorphic_pseudogene_transcript","synonyms":[{"name":"NMD polymorphic pseudogene transcript","type":"exact"},{"name":"nonsense_mediated_decay_polymorphic_pseudogene","type":"exact"}],"termid":"SO:0002118"}


id: PBO:0001864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S2 (predicted)","termid":"PBO:0001864"}


id: PBO:0001650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubp4 interactor Sfp47","termid":"PBO:0001650"}


id: SO:0000050
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A part of a gene, that has no other route in the ontology back to region. This concept is necessary for logical inference as these parts must have the properties of region. It also allows us to associate all the parts of genes with a gene.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000050 gene_part (obsolete SO:0000050)","termid":"SO:0000050"}


id: GO:0030670
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a phagocytic vesicle.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endocytic vesicle membrane","termid":"GO:0030666"},{"relation_name":"part_of","term_name":"phagocytic vesicle","termid":"GO:0045335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"phagocytic vesicle membrane","synonyms":[{"name":"phagosome membrane","type":"exact"}],"termid":"GO:0030670"}


id: GO:0047756
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + chondroitin = adenosine 3',5'-bisphosphate + chondroitin 4'-sulfate.","definition_xrefs":["MetaCyc:CHONDROITIN-4-SULFOTRANSFERASE-RXN","EC:2.8.2.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chondroitin sulfotransferase activity","termid":"GO:0034481"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016782","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"chondroitin 4-sulfotransferase activity","secondary_identifiers":["Reactome:R-HSA-1971483","RHEA:16101"],"synonyms":[{"name":"3'-phosphoadenylyl-sulfate:chondroitin 4'-sulfotransferase activity","type":"related"},{"name":"chondroitin 4-sulphotransferase activity","type":"exact"}],"termid":"GO:0047756"}


id: MONDO:0018798
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete other genetic dermis disorder (obsolete MONDO:0018798)","secondary_identifiers":["Orphanet:477808"],"termid":"MONDO:0018798","xrefs":{"Monarch":{"xref_id":"0018798"}}}


id: PBO:0078290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Cys (anticodon GCA) 23-1","termid":"PBO:0078290"}


id: GO:0075302
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of basidiospore formation, a process in which a sexually produced fungal spore is formed on a basidium in the fungi Basidiomycetes.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sexual sporulation resulting in formation of a cellular spore","termid":"GO:0043940"},{"relation_name":"regulates","term_name":"basidiospore formation","termid":"GO:0034295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"regulation of basidiospore formation","termid":"GO:0075302"}


id: GO:0018046
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a C-terminal peptidyl-methionine amide by hydrolysis and oxidation of an interior Met-Gly peptide in a secreted protein.","definition_xrefs":["RESID:AA0093"],"gene_count":0,"genotype_count":0,"name":"obsolete C-terminal peptidyl-methionine amidation (obsolete GO:0018046)","termid":"GO:0018046"}


id: FYPO:0003241
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitotic sister chromatid segregation fails to separate chromosomes into two equal masses. Unequal mitotic sister chromatid separation may be complete, with two distinct unequal DNA masses located at or near the ends of an elongated mitotic spindle, or incomplete.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"altered DNA level during vegetative growth","termid":"FYPO:0004321"},{"relation_name":"is_a","term_name":"abnormal mitotic sister chromatid segregation","termid":"FYPO:0000141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000631","FYPO:0000641","FYPO:0000337"],"is_obsolete":false,"name":"unequal mitotic sister chromatid segregation","synonyms":[{"name":"chromosome missegregation","type":"exact"},{"name":"mitotic chromosome nondisjunction","type":"exact"},{"name":"unequal mitotic chromosome segregation","type":"exact"},{"name":"unequal mitotic sister chromatid segregation during vegetative growth","type":"exact"},{"name":"unequal mitotic sister chromatid separation","type":"related"},{"name":"unequal sister chromatid segregation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003241"}


id: GO:0010463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population. A mesenchymal cell is a cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal cell proliferation","termid":"GO:0010463"}


id: MONDO:1011473
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Amyloidosis that occurs in Japanese quail.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"},{"relation_name":"is_a","term_name":"amyloidosis, non-human animal","termid":"MONDO:1011415"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amyloidosis, Japanese quail","secondary_identifiers":["OMIA:000037-93934"],"termid":"MONDO:1011473","xrefs":{"Monarch":{"xref_id":"1011473"}}}


id: PBO:0028243
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_level_of_glycosylated_protein_in_cell","termid":"PBO:0028243"}


id: FYPO:0006005
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actomyosin contractile ring localization is normal (i.e. indistinguishable from wild type). Actomyosin contractile ring localization is the part of cytokinesis in which the actomyosin contractile ring is assembled and/or maintained in a specific location.","definition_xrefs":["PomBase:mah","GO:1902405"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization phenotype during vegetative growth","termid":"FYPO:0001337"},{"relation_name":"is_a","term_name":"normal actomyosin contractile ring organization","termid":"FYPO:0007827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000138","FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal actomyosin contractile ring localization","synonyms":[{"name":"normal actomyosin contractile ring localisation","type":"exact"},{"name":"normal actomyosin contractile ring localization during mitotic cell cycle","type":"related"},{"name":"normal actomyosin contractile ring localization during vegetative growth","type":"exact"},{"name":"normal actomyosin contractile ring positioning","type":"exact"},{"name":"normal cytokinetic contractile ring localization","type":"exact"},{"name":"normal mitotic actomyosin contractile ring localization","type":"exact"},{"name":"normal mitotic contractile ring localization","type":"exact"}],"termid":"FYPO:0006005"}


id: PBO:0013075
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements E. coli hisI","termid":"PBO:0013075"}


id: MONDO:0001312
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A acute transudative otitis media with thin, watery and sterile effusion.","definition_xrefs":["DOID:11557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute transudative otitis media","termid":"MONDO:0002738"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute serous otitis media","secondary_identifiers":["ICD9:381.01","SCTID:194240006","ICD10CM:H65.0","MEDGEN:509955","UMLS:C0155415"],"synonyms":[{"name":"acute non-suppurative otitis media - serous","type":"exact"}],"termid":"MONDO:0001312","xrefs":{"Monarch":{"xref_id":"0001312"}}}


id: GO:0051850
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The production of structures and/or molecules in an organism that are required for the acquisition and/or utilization of nutrients obtained from its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:cc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological process involved in interaction with symbiont","termid":"GO:0051702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acquisition of nutrients from symbiont","termid":"GO:0051850"}


id: GO:0102093
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: acryloyl-CoA + H2O = acrylate + coenzyme A + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete acrylate:acyl-coA CoA transferase activity (obsolete GO:0102093)","termid":"GO:0102093"}


id: PBO:0073614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SID1 transmembrane family member 1","termid":"PBO:0073614"}


id: GO:0120265
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chromosome attachment to the nuclear envelope.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell cycle process","termid":"GO:0010948"},{"relation_name":"is_a","term_name":"regulation of chromosome attachment to the nuclear envelope","termid":"GO:0120264"},{"relation_name":"negatively_regulates","term_name":"chromosome attachment to the nuclear envelope","termid":"GO:0097240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"negative regulation of chromosome attachment to the nuclear envelope","synonyms":[{"name":"down regulation of chromosome attachment to the nuclear envelope","type":"exact"},{"name":"down-regulation of chromosome attachment to the nuclear envelope","type":"exact"},{"name":"downregulation of chromosome attachment to the nuclear envelope","type":"exact"},{"name":"inhibition of chromosome attachment to the nuclear envelope","type":"narrow"}],"termid":"GO:0120265"}


id: PBO:0088213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transposable element zinc finger related protein","termid":"PBO:0088213"}


id: MONDO:0019261
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of neuronal ceroid lipofuscinosis (NCL) characterized by onset during the second half of the first year of life and rapid mental and motor deterioration leading to loss of all psychomotor abilities.","definition_xrefs":["Orphanet:79263"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"progressive myoclonus epilepsy","termid":"MONDO:0020074"},{"relation_name":"is_a","term_name":"neuronal ceroid lipofuscinosis","termid":"MONDO:0016295"},{"relation_name":"is_a","term_name":"cerebral lipidosis with dementia","termid":"MONDO:0020143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0002039","MONDO:0002561","MONDO:0005066","MONDO:0005559"],"is_obsolete":false,"name":"infantile neuronal ceroid lipofuscinosis","secondary_identifiers":["icd11.foundation:797123687","GARD:9447","NORD:1689","NANDO:2201241","UMLS:C0268281","MEDGEN:75666","NANDO:1200152","SCTID:58258004"],"synonyms":[{"name":"Classic Infantile CLN1 Disease","type":"exact"},{"name":"Hagberg-Santavuori disease","type":"exact"},{"name":"INCL","type":"exact"},{"name":"Santavuori disease","type":"exact"},{"name":"Santavuori-Haltia disease","type":"exact"},{"name":"infantile NCL","type":"exact"}],"termid":"MONDO:0019261","xrefs":{"Monarch":{"xref_id":"0019261"}}}


id: FYPO:0001779
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of centromeres and associated kinetochores into a cluster at the nuclear periphery is abnormal. Centromere-kinetochore complexes normally cluster near the old spindle pole body during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal centromere localization","termid":"FYPO:0001778"},{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle process","termid":"FYPO:0002737"},{"relation_name":"is_a","term_name":"abnormal heterochromatin tethering at nuclear periphery","termid":"FYPO:0007768"},{"relation_name":"is_a","term_name":"abnormal chromosome region phenotype during vegetative growth","termid":"FYPO:0008382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000631","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal centromere clustering at nuclear periphery during vegetative growth","secondary_identifiers":["FYPO:0001780"],"synonyms":[{"name":"abnormal centromere clustering at SPB","type":"related"},{"name":"abnormal centromere clustering at nuclear periphery during interphase of mitotic cell cycle","type":"exact"},{"name":"abnormal centromere clustering at nuclear periphery during mitotic cell cycle","type":"exact"},{"name":"abnormal centromere clustering at old mitotic spindle pole body","type":"related"},{"name":"abnormal centromere clustering at spindle pole body","type":"related"},{"name":"abnormal centromere-SPB clustering","type":"related"},{"name":"abnormal kinetochore clustering at SPB","type":"related"},{"name":"abnormal kinetochore clustering at old mitotic spindle pole body","type":"related"},{"name":"abnormal kinetochore clustering at spindle pole body","type":"related"},{"name":"abnormal kinetochore localization at spindle pole body","type":"related"},{"name":"abnormal kinetochores to spindle pole body clustering","type":"related"},{"name":"abnormal mitotic centromere clustering at nuclear periphery","type":"exact"},{"name":"mislocalized, scattered centromeres","type":"related"},{"name":"unclustered kinetochores","type":"related"}],"termid":"FYPO:0001779"}


id: GO:1902937
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of inward rectifier potassium channel activity.","definition_xrefs":["GOC:bhm","GO_REF:0000088","GOC:TermGenie","PMID:16834334"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated potassium channel complex","termid":"GO:0008076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"inward rectifier potassium channel complex","termid":"GO:1902937"}


id: GO:0002442
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of serotonin by a cell as part of an inflammatory response.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serotonin secretion","termid":"GO:0001820"},{"relation_name":"part_of","term_name":"serotonin production involved in inflammatory response","termid":"GO:0002351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0023052"],"is_obsolete":false,"name":"serotonin secretion involved in inflammatory response","synonyms":[{"name":"serotonin release involved in inflammatory response","type":"related"},{"name":"serotonin secretion involved in acute inflammatory response","type":"broad"}],"termid":"GO:0002442"}


id: GO:0043598
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cytoplasmic complex of two polypeptides that loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA, thereby permitting processive DNA synthesis catalyzed by DNA polymerase. Examples of this component are found in prokaryotic species.","definition_xrefs":["PMID:14646196","GOC:mtg_sensu","PMID:16172520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA replication factor C complex","termid":"GO:0005663"},{"relation_name":"part_of","term_name":"cytoplasmic replisome","termid":"GO:0043600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005575","GO:0005694"],"is_obsolete":false,"name":"cytoplasmic DNA replication factor C complex","synonyms":[{"name":"cytoplasmic RFC","type":"exact"},{"name":"cytoplasmic clamp loader","type":"exact"}],"termid":"GO:0043598"}


id: PATO:0000712
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000712 bouts value (obsolete PATO:0000712)","termid":"PATO:0000712"}


id: MONDO:0958001
data:
  {"annotated_genes":["SJAG_04653"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87812],"is_not":false,"summary":null,"term":"MONDO:0958001"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04653":null},"genotype_count":0,"is_obsolete":false,"name":"Alfadhel syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1845825","UMLS:C5882735","OMIM:620655"],"termid":"MONDO:0958001","terms_by_termid":{"MONDO:0958001":null},"xrefs":{"Monarch":{"xref_id":"0958001"}}}


id: GO:0097112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The receptor clustering process in which gamma-aminobutyric acid (GABA) receptors are localized to distinct domains in the cell membrane.","definition_xrefs":["PMID:15620359","GOC:sjp","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurotransmitter-gated ion channel clustering","termid":"GO:0072578"},{"relation_name":"part_of","term_name":"postsynaptic membrane organization","termid":"GO:0001941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0051179","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"gamma-aminobutyric acid receptor clustering","synonyms":[{"name":"GABA receptor clustering","type":"exact"}],"termid":"GO:0097112"}


id: MONDO:0006021
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome typically consisting of angina (cardiac chest pain) at rest that occurs in cycles. It is caused by vasospasm, a narrowing of the coronary arteries caused by contraction of the smooth muscle tissue in the vessel walls rather than directly by atherosclerosis (buildup of fatty plaque and hardening of the arteries). For a portion of patients Prinzmetal's angina may be a manifestation of vasospastic disorder and is associated with migraine, Raynaud's phenomenon or aspirin-induced asthma.","definition_xrefs":["Wikipedia:Prinzmetal%27s_angina"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coronary vasospasm","termid":"MONDO:0005356"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"Prinzmetal angina","secondary_identifiers":["Wikipedia:Prinzmetal's_angina","MESH:D000788","UMLS:C0002963","ICD9:413.1","MEDGEN:295","EFO:1000013","SCTID:87343002","DOID:0111151"],"synonyms":[{"name":"Prinzmetal's angina","type":"exact"},{"name":"Prinzmetal's variant angina","type":"exact"},{"name":"angina inversa","type":"exact"},{"name":"variant angina","type":"exact"},{"name":"variant angina pectoris","type":"exact"}],"termid":"MONDO:0006021","xrefs":{"Monarch":{"xref_id":"0006021"}}}


id: GO:0001677
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of a complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2 (either eIF2 in eukaryotes, or IF2 in prokaryotes). In prokaryotes, fMet-tRNA (initiator) is used rather than Met-tRNA (initiator).","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-RNA complex assembly","termid":"GO:0022618"},{"relation_name":"part_of","term_name":"translational initiation","termid":"GO:0006413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0065003","GO:0010467"],"is_obsolete":false,"name":"formation of translation initiation ternary complex","synonyms":[{"name":"translation initiation ternary complex assembly","type":"exact"}],"termid":"GO:0001677"}


id: PBO:0046362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ENTH domain containing 1","termid":"PBO:0046362"}


id: PBO:0070743
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10a pseudogene 13","termid":"PBO:0070743"}


id: PBO:0004466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contractile ring protein Imp2","termid":"PBO:0004466"}


id: MOD:01768
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue hydroxyl group with a palmitoleyloxy group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acylated residue","termid":"MOD:00671"},{"relation_name":"is_a","term_name":"palmitoleylated residue","termid":"MOD:01423"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:01155"],"is_obsolete":false,"name":"O-palmitoleylated residue","termid":"MOD:01768"}


id: GO:0035458
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-beta stimulus. Interferon-beta is a type I interferon.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to interferon-beta","termid":"GO:0035456"},{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to interferon-beta","synonyms":[{"name":"cellular response to beta-1 interferon","type":"related"},{"name":"cellular response to fiblaferon","type":"exact"},{"name":"cellular response to fibroblast interferon","type":"exact"}],"termid":"GO:0035458"}


id: PBO:0076831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"telomere repeat binding bouquet formation protein 2","termid":"PBO:0076831"}


id: GO:0072027
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the connecting tubule over time, from its formation to the mature structure. The connecting tubule is a tubular segment of the nephron; it connects the distal convoluted tubule to the collecting duct.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron tubule development","termid":"GO:0072080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"connecting tubule development","synonyms":[{"name":"connecting duct development","type":"exact"}],"termid":"GO:0072027"}


id: PBO:0116325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermidine family transmembrane transporter Shp2","termid":"PBO:0116325"}


id: PBO:0059125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multiple PDZ domain crumbs cell polarity complex component","termid":"PBO:0059125"}


id: MONDO:1012487
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"zinc deficiency-like syndrome, non-human animal","termid":"MONDO:1011758"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc deficiency-like syndrome, cattle","secondary_identifiers":["OMIA:001935-9913"],"termid":"MONDO:1012487","xrefs":{"Monarch":{"xref_id":"1012487"}}}


id: GO:0033734
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-2-benzylsuccinyl-CoA + 2 electron-transferring flavoprotein = (E)-2-benzylidenesuccinyl-CoA + 2 reduced electron-transferring flavoprotein.","definition_xrefs":["EC:1.3.8.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor","termid":"GO:0052890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"(R)-benzylsuccinyl-CoA dehydrogenase activity","secondary_identifiers":["RHEA:20876","UM-BBD_reactionID:r0330"],"synonyms":[{"name":"(R)-benzylsuccinyl-CoA:(acceptor) oxidoreductase activity","type":"related"},{"name":"(R)-benzylsuccinyl-CoA:acceptor oxidoreductase activity","type":"related"},{"name":"BbsG","type":"related"}],"termid":"GO:0033734"}


id: GO:0015797
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of mannitol across a membrane. Mannitol is the alditol derived from D-mannose by reduction of the aldehyde group.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyol transmembrane transport","termid":"GO:0015791"},{"relation_name":"is_a","term_name":"carbohydrate transmembrane transport","termid":"GO:0034219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"mannitol transmembrane transport","synonyms":[{"name":"mannitol transport","type":"broad"}],"termid":"GO:0015797"}


id: MONDO:0020623
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete blood group--ul system (obsolete MONDO:0020623)","secondary_identifiers":["OMIM:112000"],"synonyms":[{"name":"BLOOD GROUP--Ul SYSTEM","type":"related"},{"name":"UL","type":"related"}],"termid":"MONDO:0020623","xrefs":{"Monarch":{"xref_id":"0020623"}}}


id: PATO:0002516
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer being hidden from view or covered by another entity.","definition_xrefs":["PATOC:EJS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"concealed by","termid":"PATO:0002516"}


id: GO:0033104
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex of proteins that permits the transfer of proteins into the extracellular milieu or directly into host cells via the type VI secretion system. Proteins secreted by this complex do not require an N-terminal signal sequence.","definition_xrefs":["GOC:mlg","PMID:16432199","PMID:16763151"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"type VI protein secretion system complex","synonyms":[{"name":"T6SS complex","type":"exact"}],"termid":"GO:0033104"}


id: MONDO:0011031
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal dominant nonsyndromic deafness in which the cause of the disease is a mutation in the EYA4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0000426"],"is_obsolete":false,"name":"autosomal dominant nonsyndromic hearing loss 10","secondary_identifiers":["DOID:0110542","MEDGEN:321966","MESH:C563354","OMIM:601316","UMLS:C1832476","GARD:18103"],"synonyms":[{"name":"DFNA10","type":"narrow"},{"name":"EYA4 autosomal dominant nonsyndromic deafness","type":"narrow"},{"name":"autosomal dominant deafness 10","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness 10","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness caused by mutation in EYA4","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness type 10","type":"narrow"},{"name":"autosomal dominant nonsyndromic hearing loss 10","type":"exact"},{"name":"deafness, autosomal dominant 10","type":"narrow"},{"name":"deafness, autosomal dominant type 10","type":"narrow"}],"termid":"MONDO:0011031","xrefs":{"Monarch":{"xref_id":"0011031"}}}


id: MONDO:1011916
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"urinary system disorder, non-human animal","termid":"MONDO:1011365"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meckel-like hepatorenal fibrocystic dysplasia syndrome, non-human animal","secondary_identifiers":["OMIA:002176"],"termid":"MONDO:1011916","xrefs":{"Monarch":{"xref_id":"1011916"}}}


id: MONDO:0859520
data:
  {"annotated_genes":["SJAG_03322"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88322],"is_not":false,"summary":null,"term":"MONDO:0859520"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex IV deficiency, nuclear-type","termid":"MONDO:0033885"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03322":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial complex IV deficiency, nuclear type 23","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5830322","OMIM:620275","DOID:0070485","MEDGEN:1840958"],"termid":"MONDO:0859520","terms_by_termid":{"MONDO:0859520":null},"xrefs":{"Monarch":{"xref_id":"0859520"}}}


id: PBO:0000963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Cysteine","termid":"PBO:0000963"}


id: GO:0034775
data:
  {"annotated_genes":["SJAG_01344","SJAG_03577","SJAG_05213","SJAG_03497","SJAG_01660"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97306],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098709"},{"annotations":[114970],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0160007"},{"annotations":[120060,97854,98832],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071996"}]},"cv_name":"biological_process","definition":"A process in which glutathione is transported across a membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutathione transport","termid":"GO:0034635"},{"relation_name":"is_a","term_name":"tripeptide transmembrane transport","termid":"GO:0035443"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01344":null,"SJAG_01660":null,"SJAG_03497":null,"SJAG_03577":null,"SJAG_05213":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085","GO:0051179"],"is_obsolete":false,"name":"glutathione transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"glutathione membrane transport","type":"exact"},{"name":"transmembrane glutathione transport","type":"exact"}],"termid":"GO:0034775","terms_by_termid":{"GO:0071996":null,"GO:0098709":null,"GO:0160007":null}}


id: PBO:0061794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"odontogenic, ameloblast associated","termid":"PBO:0061794"}


id: FYPO:0002566
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K9 methylation during vegetative growth","termid":"FYPO:0000458"},{"relation_name":"is_a","term_name":"abolished histone methylation during vegetative growth","termid":"FYPO:0002565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0002494","FYPO:0001320"],"is_obsolete":false,"name":"abolished histone H3-K9 methylation during vegetative growth","synonyms":[{"name":"abolished histone H3 K9 methylation during vegetative growth","type":"exact"},{"name":"abolished histone H3-K9 methylation during mitotic cell cycle","type":"related"},{"name":"abolished histone H3K9me during vegetative growth","type":"exact"},{"name":"abolished histone lysine H3 K9 methylation during vegetative growth","type":"exact"},{"name":"histone H3-K9 methylation abolished during vegetative growth","type":"exact"},{"name":"histone H3-K9 methylation absent during vegetative growth","type":"exact"}],"termid":"FYPO:0002566"}


id: GO:0043104
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the activity of the enzyme GTP cyclohydrolase I.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of GTP cyclohydrolase I activity (obsolete GO:0043104)","synonyms":[{"name":"activation of GTP cyclohydrolase I activity","type":"narrow"},{"name":"stimulation of GTP cyclohydrolase I activity","type":"narrow"},{"name":"up regulation of GTP cyclohydrolase I activity","type":"exact"},{"name":"up-regulation of GTP cyclohydrolase I activity","type":"exact"},{"name":"upregulation of GTP cyclohydrolase I activity","type":"exact"}],"termid":"GO:0043104"}


id: PBO:0067528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 672, pseudogene","termid":"PBO:0067528"}


id: PBO:0057355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548a-3","termid":"PBO:0057355"}


id: PBO:0002487
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.1.1.101","termid":"PBO:0002487"}


id: PR:Q9P7V3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A translin that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01818","PANTHER:PTHR10741:SF2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translin-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC30.03c","secondary_identifiers":["UniProtKB:Q9P7V3"],"synonyms":[{"name":"Spom972h-TSN","type":"exact"},{"name":"meiotically up-regulated gene 90 protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"translin homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7V3"}


id: PBO:0015233
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colorectal cancer","termid":"PBO:0015233"}


id: MONDO:0020291
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hypoplastic right-heart syndrome (HRHS) is a rare, cyanotic congenital heart malformation caused by underdevelopment of the right-sided heart structures (tricuspid valve, RV, pulmonary valve, and pulmonary artery) commonly associated with an atrial septal defect, ostium secundum type. Pulmonary blood flow is diminished and right-to-left shunting occurs at the atrial level, leading to dyspnea, fatigue, atrial arrhythmias, right-sided heart failure, hypoxemia, repeated miscarriages that were mostly due to hypoxemia and cyanosis. Two subtypes of HRHS have been characterized: pulmonary atresia-intact ventricular septum and right ventricular hypoplasia.","definition_xrefs":["Orphanet:98723"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"univentricular cardiopathy","termid":"MONDO:0019820"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypoplastic right heart syndrome","secondary_identifiers":["ICD10CM:Q22.6","MedDRA:10064962","ICD9:746.89","UMLS:C0344963","SCTID:268180007","GARD:2922","MedDRA:10050053","DOID:0070315","NCIT:C99053","MEDGEN:83376"],"synonyms":[{"name":"right hypoplastic heart syndrome","type":"exact"}],"termid":"MONDO:0020291","xrefs":{"Monarch":{"xref_id":"0020291"}}}


id: PR:O74921
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC757.11c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74921"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized MFS-type transporter C757.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC757.11c","synonyms":[{"name":"Spom972h-SPCC757.11c","type":"exact"}],"termid":"PR:O74921"}


id: GO:0008210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving estrogens, C18 steroid hormones that can stimulate the development of female sexual characteristics. Also found in plants.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid metabolic process","termid":"GO:0008202"},{"relation_name":"is_a","term_name":"hormone metabolic process","termid":"GO:0042445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"estrogen metabolic process","synonyms":[{"name":"estrogen metabolism","type":"exact"},{"name":"oestrogen metabolic process","type":"exact"},{"name":"oestrogen metabolism","type":"exact"}],"termid":"GO:0008210"}


id: MONDO:0011746
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"symphalangism, distal, with microdontia, dental pulp stones, and narrowed zygomatic arch","secondary_identifiers":["MESH:C538148","OMIM:606895","MEDGEN:376067","UMLS:C1847185"],"synonyms":[{"name":"distal symphalangism, hypoplastic carpal bones, microdontia, dental pulp stones, and narrowing of the zygomatic arch","type":"related"},{"name":"symphalangism, distal, with microdontia, dental pulp stones, and narrowed zygomatic arch","type":"exact"}],"termid":"MONDO:0011746","xrefs":{"Monarch":{"xref_id":"0011746"}}}


id: PBO:0059274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L35 pseudogene 3","termid":"PBO:0059274"}


id: PBO:0038424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-2-macroglobulin like 1","termid":"PBO:0038424"}


id: GO:0102279
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: an 11-cis retinol-[cellular-retinol-binding-protein] + a phosphatidylcholine = a cellular-retinol-binding protein + an 11-cis-retinyl ester + a 1-lysophosphatidylcholine.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete lecithin:11-cis retinol acyltransferase activity (obsolete GO:0102279)","termid":"GO:0102279"}


id: PBO:0001202
data:
  {"annotation_feature_type":"gene","cv_name":"sequence_feature","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein repeat containing","termid":"PBO:0001202"}


id: GO:0048758
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a companion cell. The companion cell is the specialized parenchyma cell associated with a sieve-tube member in angiosperm phloem and arising from the same mother cell as the sieve-tube member.","definition_xrefs":["GOC:jid","CL:0000284"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plant parenchymal cell differentiation","termid":"GO:0048760"},{"relation_name":"part_of","term_name":"phloem development","termid":"GO:0010088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"companion cell differentiation","termid":"GO:0048758"}


id: PBO:0085964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; overexpression suppresses the high-frequency loss of mini-chromosomes, probably by increasing the rate of proper chromosome segregation; translated gene product of YCR041W, but not its transcript, is responsible for suppression; suppression ability of YCR041W is completely dependent on silencing protein Sir4p","termid":"PBO:0085964"}


id: GO:1904139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of microglial cell migration.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:BHF","PMID:19100238","GOC:nc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glial cell migration","termid":"GO:1903975"},{"relation_name":"is_a","term_name":"regulation of macrophage migration","termid":"GO:1905521"},{"relation_name":"regulates","term_name":"microglial cell migration","termid":"GO:1904124"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of microglial cell migration","termid":"GO:1904139"}


id: PBO:0083630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EH domain-containing protein; involved in regulating phosphatidylinositol 4,5-bisphosphate levels and autophagy; Irs4p and Tax4p bind and activate the PtdIns phosphatase Inp51p; Irs4p and Tax4p are involved in localizing Atg17p to the PAS; IRS4 has a paralog, TAX4, that arose from the whole genome duplication","termid":"PBO:0083630"}


id: PBO:0064751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 87","termid":"PBO:0064751"}


id: MONDO:0005388
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Primary biliary cholangitis (PBC) is a chronic and slowly progressive cholestatic liver disease of autoimmune etiology characterized by injury of the intrahepatic bile ducts that may eventually lead to liver failure.","definition_xrefs":["Orphanet:186"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biliary tract disorder","termid":"MONDO:0004868"},{"relation_name":"is_a","term_name":"cirrhosis, familial","termid":"MONDO:0007329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0019303"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0019303","MONDO:0002515"],"is_obsolete":false,"name":"primary biliary cholangitis","secondary_identifiers":["EFO:1001486","OMIMPS:109720","UMLS:C0008312","NORD:1604","NANDO:1200439","NCIT:C27167","ICD9:571.6","MedDRA:10004661","icd11.foundation:649193479","GARD:7459","DOID:12236","ICD10CM:K74.3","SCTID:31712002","MEDGEN:3035","MedDRA:10019137","MESH:D008105"],"synonyms":[{"name":"Hanot syndrome","type":"exact"},{"name":"PBC","type":"exact"},{"name":"biliary cirrhosis, primary","type":"related"},{"name":"biliary liver cirrhosis","type":"exact"},{"name":"cholestatic cirrhosis","type":"exact"},{"name":"chronic non-suppurative destructive cholangitis","type":"exact"},{"name":"chronic nonsuppurative destructive cholangitis","type":"exact"},{"name":"familial primary biliary cirrhosis","type":"related"},{"name":"primary Bilary cirrhosis (PBC)","type":"exact"},{"name":"primary biliary cirrhosis","type":"exact"}],"termid":"MONDO:0005388","xrefs":{"Monarch":{"xref_id":"0005388"}}}


id: PBO:0066172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBIS pseudogene 5","termid":"PBO:0066172"}


id: MONDO:0022700
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spastic monoplegia","termid":"MONDO:0001169"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebral palsy spastic monoplegic","secondary_identifiers":["MEDGEN:78732","UMLS:C0270807"],"synonyms":[{"name":"spastic monoplegia cerebral palsy","type":"related"},{"name":"spastic monoplegic cerebral palsy","type":"related"}],"termid":"MONDO:0022700","xrefs":{"Monarch":{"xref_id":"0022700"}}}


id: PBO:0081564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 488","termid":"PBO:0081564"}


id: PBO:0046231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C pseudogene 24","termid":"PBO:0046231"}


id: PBO:0078789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 12-1","termid":"PBO:0078789"}


id: PBO:0113747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SDHC pseudogene 3","termid":"PBO:0113747"}


id: MONDO:0017372
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fetal varicella syndrome (CVS) is an acquired developmental anomaly syndrome characterized by skin, neurological, ocular, limbs and growth defects secondary to maternal Varicella-Zoster Virus (VZV) infection.","definition_xrefs":["Orphanet:291"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"viral infectious disease","termid":"MONDO:0005108"},{"relation_name":"is_a","term_name":"infectious embryofetopathy","termid":"MONDO:0016511"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital varicella syndrome","secondary_identifiers":["icd11.foundation:2071159826","UMLS:C0343560","ICD9:771.2","NCIT:C116800","GARD:45","SCTID:277644009","NORD:1003","MEDGEN:87473"],"synonyms":[{"name":"Varicella embryopathy","type":"related"},{"name":"Varicella virus antenatal infection","type":"related"},{"name":"antenatal varicella virus infection","type":"exact"},{"name":"fetal effects of chickenpox","type":"related"},{"name":"fetal effects of varicella zoster virus","type":"related"},{"name":"fetal varicella infection","type":"related"},{"name":"fetal varicella zoster syndrome","type":"related"},{"name":"foetal effects of chickenpox","type":"related"},{"name":"foetal effects of varicella zoster virus","type":"related"},{"name":"foetal varicella infection","type":"related"},{"name":"foetal varicella zoster syndrome","type":"related"},{"name":"mother-to-child transmission of varicella syndrome","type":"exact"}],"termid":"MONDO:0017372","xrefs":{"Monarch":{"xref_id":"0017372"}}}


id: PBO:0057305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 515-2","termid":"PBO:0057305"}


id: MONDO:0033637
data:
  {"annotated_genes":["SJAG_02504"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87473],"is_not":false,"summary":null,"term":"MONDO:0033637"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex IV deficiency, nuclear-type","termid":"MONDO:0033885"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02504":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial complex 4 deficiency, nuclear type 7","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1754683","OMIM:619051","DOID:0070494","UMLS:C5436685","GARD:16406"],"synonyms":[{"name":"MC4DN7","type":"exact"},{"name":"mitochondrial complex IV deficiency, nuclear type 7","type":"exact"}],"termid":"MONDO:0033637","terms_by_termid":{"MONDO:0033637":null},"xrefs":{"Monarch":{"xref_id":"0033637"}}}


id: GO:0030592
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent attachment of an ADP-ribosyl group to a residue in double-stranded DNA.","definition_xrefs":["PMID:11592983","PMID:29361132","PMID:27471034","PMID:29520010"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA modification","termid":"GO:0006304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"DNA ADP-ribosylation","termid":"GO:0030592"}


id: GO:1990124
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A ribonucleoprotein complex containing both protein and messenger RNA (mRNA) molecules.","definition_xrefs":["PMID:15574591","PMID:21915786","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete messenger ribonucleoprotein complex (obsolete GO:1990124)","synonyms":[{"name":"mRNA-protein complex","type":"exact"},{"name":"mRNP","type":"exact"},{"name":"mRNP complex","type":"exact"},{"name":"messenger ribonucleoprotein particle","type":"related"}],"termid":"GO:1990124"}


id: FYPO:0003891
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of intragenic meiotic recombination is normal (i.e. indistinguishable from wild type). Intragenic meiotic recombination can result in gene conversion events.","definition_xrefs":["PomBase:mah","PMID:11104907"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiotic cell cycle process","termid":"FYPO:0007078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal intragenic meiotic recombination","synonyms":[{"name":"normal meiotic intragenic recombination","type":"exact"}],"termid":"FYPO:0003891"}


id: PBO:0053174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine, glutamate and lysine rich 1","termid":"PBO:0053174"}


id: MONDO:0003766
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cancer involving a dorsal plus ventral thalamus.","definition_xrefs":["MONDO:patterns/cancer"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diencephalic cancer","termid":"MONDO:0002786"},{"relation_name":"is_a","term_name":"thalamic disorder","termid":"MONDO:0003081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"thalamic cancer","secondary_identifiers":["NCIT:C4576","icd11.foundation:610018988","SCTID:188287005","UMLS:C0346902","DOID:6098","MEDGEN:83429"],"synonyms":[{"name":"cancer of dorsal plus ventral thalamus","type":"exact"},{"name":"dorsal plus ventral thalamus cancer","type":"exact"},{"name":"malignant dorsal plus ventral thalamus neoplasm","type":"exact"},{"name":"malignant neoplasm of dorsal plus ventral thalamus","type":"exact"},{"name":"malignant neoplasm of thalamus","type":"exact"},{"name":"malignant neoplasm of the thalamus","type":"exact"},{"name":"malignant thalamic neoplasm","type":"exact"},{"name":"malignant thalamic neoplasms","type":"exact"},{"name":"malignant thalamic tumor","type":"exact"},{"name":"malignant thalamic tumors","type":"exact"},{"name":"malignant thalamic tumour","type":"exact"},{"name":"malignant thalamic tumours","type":"exact"},{"name":"malignant thalamus neoplasm","type":"exact"},{"name":"malignant thalamus neoplasms","type":"exact"},{"name":"malignant thalamus tumor","type":"exact"},{"name":"malignant thalamus tumors","type":"exact"},{"name":"malignant thalamus tumour","type":"exact"},{"name":"malignant thalamus tumours","type":"exact"},{"name":"malignant tumor of thalamus","type":"exact"},{"name":"malignant tumor of the thalamus","type":"exact"},{"name":"malignant tumour of thalamus","type":"exact"},{"name":"malignant tumour of the thalamus","type":"exact"},{"name":"thalamic neoplasm","type":"related"},{"name":"tumor of thalamus","type":"exact"},{"name":"tumour of thalamus","type":"exact"}],"termid":"MONDO:0003766","xrefs":{"Monarch":{"xref_id":"0003766"}}}


id: FYPO:0001342
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype that affects a response to a stimulus in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response phenotype","termid":"FYPO:0000298"},{"relation_name":"is_a","term_name":"cellular process phenotype during vegetative growth","termid":"FYPO:0001331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000298"],"is_obsolete":false,"name":"cellular response phenotype during vegetative growth","synonyms":[{"name":"cellular response phenotype during mitotic cell cycle","type":"related"},{"name":"fission yeast cellular response phenotype during vegetative growth","type":"exact"}],"termid":"FYPO:0001342"}


id: GO:0140625
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with the opioid growth factor (OGF, met-enkephalin) and transmitting the signal across the nuclear membrane. Met-enkephalin is an endogenous opioid peptide that binds to opioid and opioid growth factor receptors, regulating tissue growth in a variety of cellular processes.","definition_xrefs":["PMID:11890982"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide receptor activity","termid":"GO:0001653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"opioid growth factor receptor activity","synonyms":[{"name":"met-enkephalin receptor activity","type":"related"},{"name":"metenkefalin receptor activity","type":"related"},{"name":"methionine enkephalin receptor activity","type":"exact"}],"termid":"GO:0140625"}


id: PBO:0017773
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha Amylase Homolog","termid":"PBO:0017773"}


id: MONDO:0002162
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An extremely rare malignant neoplasm that arises from the fallopian tube and is characterized by the presence of a benign epithelial component and a sarcomatous component.","definition_xrefs":["NCIT:C40125"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"fallopian tube carcinosarcoma","termid":"MONDO:0006207"},{"relation_name":"is_a","term_name":"fallopian tube cancer","termid":"MONDO:0002158"},{"relation_name":"is_a","term_name":"adenosarcoma","termid":"MONDO:0005636"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"fallopian tube adenosarcoma","secondary_identifiers":["DOID:1973","UMLS:C1517121","MEDGEN:275872"],"synonyms":[{"name":"adenosarcoma of fallopian tube","type":"exact"},{"name":"fallopian tube Mullerian adenosarcoma","type":"exact"},{"name":"fallopian tube Müllerian adenosarcoma","type":"exact"},{"name":"fallopian tube adenosarcoma","type":"exact"},{"name":"fallopian tube mullerian adenosarcoma","type":"exact"}],"termid":"MONDO:0002162","xrefs":{"Monarch":{"xref_id":"0002162"}}}


id: SO:0002293
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The non-coding region of the mitochondrial genome that controls RNA and DNA synthesis.","definition_xrefs":["PMID:10968878"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"mitochondrial_sequence","termid":"SO:0000737"},{"relation_name":"is_a","term_name":"origin_of_replication","termid":"SO:0000296"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial_control_region","secondary_identifiers":["https://en.wikipedia.org/wiki/MtDNA_control_region"],"synonyms":[{"name":"Mitochondrial A+T region","type":"exact"},{"name":"Mitochondrial DNA control region","type":"exact"},{"name":"Mitochondrial NCR","type":"exact"},{"name":"Mitochondrial noncoding region","type":"exact"},{"name":"MtDNA control region","type":"exact"},{"name":"MtDNA_control_region","type":"exact"}],"termid":"SO:0002293"}


id: PBO:0053924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1221","termid":"PBO:0053924"}


id: PBO:0031292
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-localization_phenotype","termid":"PBO:0031292"}


id: FYPO:0006527
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of hydrolysis of peptide bonds within a protein is decreased. All proteolysis may be affected, or only cleavage of specific proteins, or even specific sites within specific proteins.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein modification","termid":"FYPO:0002498"},{"relation_name":"is_a","term_name":"abnormal proteolysis","termid":"FYPO:0005376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002494","FYPO:0001985","FYPO:0002274","FYPO:0000002"],"is_obsolete":false,"name":"decreased proteolysis","synonyms":[{"name":"decreased peptidolysis","type":"exact"},{"name":"decreased protein cleavage","type":"related"},{"name":"reduced proteolysis","type":"exact"}],"termid":"FYPO:0006527"}


id: SO:0000212
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding arginyl tRNA (SO:0000255).","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA_primary_transcript","termid":"SO:0000210"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginine_tRNA_primary_transcript","synonyms":[{"name":"arginine tRNA primary transcript","type":"exact"}],"termid":"SO:0000212"}


id: GO:0099152
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of neurotransmitter receptor from the postsynaptic endosome to the postsynaptic membrane in transport vesicles.","definition_xrefs":["GOC:dos","PMID:20098723"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biological quality","termid":"GO:0065008"},{"relation_name":"is_a","term_name":"regulation of protein localization to synapse","termid":"GO:1902473"},{"relation_name":"is_a","term_name":"regulation of receptor localization to synapse","termid":"GO:1902683"},{"relation_name":"is_a","term_name":"regulation of endosome to plasma membrane protein transport","termid":"GO:1905749"},{"relation_name":"regulates","term_name":"neurotransmitter receptor transport, endosome to postsynaptic membrane","termid":"GO:0098887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"regulation of neurotransmitter receptor transport, endosome to postsynaptic membrane","termid":"GO:0099152"}


id: FYECO:0000167
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which SDS (sodium dodecyl sulfate) was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ SDS","synonyms":[{"name":"sodium dodecyl sulfate added","type":"exact"}],"termid":"FYECO:0000167"}


id: GO:1990748
data:
  {"annotated_genes":["SJAG_03303","SJAG_01651","SJAG_04608","SJAG_04125","SJAG_04399","SJAG_03166","SJAG_01199","SJAG_04403","SJAG_01162","SJAG_03108","SJAG_02247","SJAG_03316","SJAG_04242","SJAG_04674","SJAG_02973","SJAG_01628","SJAG_00903","SJAG_03494","SJAG_03623","SJAG_01973","SJAG_04063","SJAG_00489","SJAG_01457","SJAG_01734","SJAG_02276","SJAG_02907","SJAG_01216","SJAG_01596","SJAG_05181","SJAG_01612","SJAG_02010","SJAG_03476","SJAG_06611","SJAG_01351","SJAG_00614","SJAG_00270","SJAG_04404","SJAG_05256","SJAG_03653","SJAG_00365","SJAG_02515","SJAG_01344","SJAG_00141","SJAG_04788","SJAG_01995","SJAG_04516","SJAG_04632","SJAG_02630","SJAG_03288","SJAG_00419","SJAG_03786","SJAG_04953","SJAG_02599","SJAG_02988","SJAG_04726","SJAG_01404","SJAG_03797","SJAG_02106","SJAG_00219","SJAG_00179","SJAG_02960","SJAG_04823","SJAG_03497","SJAG_00668","SJAG_00988"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89743,89840,91884,96459,96734,98883,100147,100798,100984,101631,104663,105415,110535,114123,114848,115302,115340,116438,116539,120034,120468,120609],"is_not":false,"summary":null,"term":"GO:1990748"},{"annotations":[102655,114570],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110095"},{"annotations":[110246,120059,72531,95079,98793,98831],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098849"},{"annotations":[115582],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140114"},{"annotations":[101789,119216,96979,106852,110654,120156],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061692"},{"annotations":[89168,104012],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070458"},{"annotations":[64685,57641,66463,70245,69623,108608],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098869"},{"annotations":[97316,79837],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046294"},{"annotations":[61663,74521,76152,104593],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019243"},{"annotations":[61413,106855,59613],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061727"},{"annotations":[75896,66174,61546,94909,70363,90751,91176,101056,58391],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019430"},{"annotations":[97347,101793,108417],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110052"}]},"cv_name":"biological_process","definition":"Any process carried out at the cellular level that reduces or removes the toxicity of a toxic substance. These may include transport of the toxic substance away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"},{"relation_name":"is_a","term_name":"detoxification","termid":"GO:0098754"},{"relation_name":"part_of","term_name":"cellular response to toxic substance","termid":"GO:0097237"}],"gene_count":65,"genes_by_uniquename":{"SJAG_00141":null,"SJAG_00179":null,"SJAG_00219":null,"SJAG_00270":null,"SJAG_00365":null,"SJAG_00419":null,"SJAG_00489":null,"SJAG_00614":null,"SJAG_00668":null,"SJAG_00903":null,"SJAG_00988":null,"SJAG_01162":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_01344":null,"SJAG_01351":null,"SJAG_01404":null,"SJAG_01457":null,"SJAG_01596":null,"SJAG_01612":null,"SJAG_01628":null,"SJAG_01651":null,"SJAG_01734":null,"SJAG_01973":null,"SJAG_01995":null,"SJAG_02010":null,"SJAG_02106":null,"SJAG_02247":null,"SJAG_02276":null,"SJAG_02515":null,"SJAG_02599":null,"SJAG_02630":null,"SJAG_02907":null,"SJAG_02960":null,"SJAG_02973":null,"SJAG_02988":null,"SJAG_03108":null,"SJAG_03166":null,"SJAG_03288":null,"SJAG_03303":null,"SJAG_03316":null,"SJAG_03476":null,"SJAG_03494":null,"SJAG_03497":null,"SJAG_03623":null,"SJAG_03653":null,"SJAG_03786":null,"SJAG_03797":null,"SJAG_04063":null,"SJAG_04125":null,"SJAG_04242":null,"SJAG_04399":null,"SJAG_04403":null,"SJAG_04404":null,"SJAG_04516":null,"SJAG_04608":null,"SJAG_04632":null,"SJAG_04674":null,"SJAG_04726":null,"SJAG_04788":null,"SJAG_04823":null,"SJAG_04953":null,"SJAG_05181":null,"SJAG_05256":null,"SJAG_06611":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098754"}],"interesting_parent_ids":["GO:0098754","GO:0008150"],"is_obsolete":false,"name":"cellular detoxification","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:1990748","terms_by_termid":{"GO:0019243":null,"GO:0019430":null,"GO:0046294":null,"GO:0061692":null,"GO:0061727":null,"GO:0070458":null,"GO:0098849":null,"GO:0098869":null,"GO:0110052":null,"GO:0110095":null,"GO:0140114":null,"GO:1990748":null}}


id: MONDO:0012808
data:
  {"annotated_genes":["SJAG_04621"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87932],"is_not":false,"summary":null,"term":"MONDO:0012808"}]},"cv_name":"mondo","definition":"Any familial isolated dilated cardiomyopathy in which the cause of the disease is a mutation in the ACTN2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial isolated dilated cardiomyopathy","termid":"MONDO:0700335"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04621":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"dilated cardiomyopathy 1AA","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:15543","DOID:0110428","MEDGEN:393713","UMLS:C2677338","OMIM:612158","MESH:C567407"],"synonyms":[{"name":"ACTN2 familial isolated dilated cardiomyopathy","type":"exact"},{"name":"CMD1AA","type":"exact"},{"name":"cardiomyopathy, dilated, 1AA, with or without LVNC","type":"exact"},{"name":"cardiomyopathy, dilated, 1AA, with or without left ventricular noncompaction","type":"related"},{"name":"cardiomyopathy, familial hypertrophic, 23, with or without ventricular noncompaction","type":"related"},{"name":"cardiomyopathy, hypertrophic, 23, with or without LVNC","type":"exact"},{"name":"dilated cardiomyopathy 1AA with or without left ventricular noncompaction","type":"exact"},{"name":"dilated cardiomyopathy type 1AA","type":"exact"},{"name":"familial isolated dilated cardiomyopathy caused by mutation in ACTN2","type":"exact"}],"termid":"MONDO:0012808","terms_by_termid":{"MONDO:0012808":null},"xrefs":{"Monarch":{"xref_id":"0012808"}}}


id: MONDO:0017002
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete polysomy of X chromosome (obsolete MONDO:0017002)","secondary_identifiers":["Orphanet:263723"],"termid":"MONDO:0017002","xrefs":{"Monarch":{"xref_id":"0017002"}}}


id: GO:1903542
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of exosomal secretion.","definition_xrefs":["GOC:TermGenie","PMID:24105262","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of exocytosis","termid":"GO:0045920"},{"relation_name":"is_a","term_name":"regulation of exosomal secretion","termid":"GO:1903541"},{"relation_name":"negatively_regulates","term_name":"exosomal secretion","termid":"GO:1990182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of exosomal secretion","synonyms":[{"name":"down regulation of exosomal protein secretion","type":"narrow"},{"name":"down regulation of exosomal secretion","type":"exact"},{"name":"down regulation of exosomal secretory pathway","type":"exact"},{"name":"down regulation of extracellular vesicular exosome secretion","type":"exact"},{"name":"down regulation of secretion of exosome","type":"exact"},{"name":"down-regulation of exosomal protein secretion","type":"narrow"},{"name":"down-regulation of exosomal secretion","type":"exact"},{"name":"down-regulation of exosomal secretory pathway","type":"exact"},{"name":"down-regulation of extracellular vesicular exosome secretion","type":"exact"},{"name":"down-regulation of secretion of exosome","type":"exact"},{"name":"downregulation of exosomal protein secretion","type":"narrow"},{"name":"downregulation of exosomal secretion","type":"exact"},{"name":"downregulation of exosomal secretory pathway","type":"exact"},{"name":"downregulation of extracellular vesicular exosome secretion","type":"exact"},{"name":"downregulation of secretion of exosome","type":"exact"},{"name":"inhibition of exosomal protein secretion","type":"narrow"},{"name":"inhibition of exosomal secretion","type":"narrow"},{"name":"inhibition of exosomal secretory pathway","type":"narrow"},{"name":"inhibition of extracellular vesicular exosome secretion","type":"narrow"},{"name":"inhibition of secretion of exosome","type":"narrow"},{"name":"negative regulation of exosomal protein secretion","type":"narrow"},{"name":"negative regulation of exosomal secretory pathway","type":"exact"},{"name":"negative regulation of extracellular vesicular exosome secretion","type":"exact"},{"name":"negative regulation of secretion of exosome","type":"exact"}],"termid":"GO:1903542"}


id: PBO:0077106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocase of inner mitochondrial membrane 10","termid":"PBO:0077106"}


id: GO:0030323
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the respiratory tube over time, from its formation to the mature structure. The respiratory tube is assumed to mean any tube in the respiratory tract.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube development","termid":"GO:0035295"},{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"respiratory tube development","termid":"GO:0030323"}


id: PBO:0072924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small Cajal body-specific RNA 5","termid":"PBO:0072924"}


id: PBO:0080064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 32 pseudogene 1","termid":"PBO:0080064"}


id: PBO:0034634
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_chromosome_segregation_during_meiosis_I_with_split_kinetochore_and_normal_chromosome_separation","termid":"PBO:0034634"}


id: PBO:0041276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C1q and TNF related 3","termid":"PBO:0041276"}


id: MONDO:0009548
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial primary hypomagnesemia with hypercalciuria and nephrocalcinosis with severe ocular involvement (FHHNCOI) is a form of familial primary hypomagnesemia (FPH), characterized by excessive magnesium and calcium renal wasting, bilateral nephrocalcinosis, progressive renal failure and severe ocular abnormalities.","definition_xrefs":["Orphanet:2196"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"oculocerebrorenal syndrome","termid":"MONDO:0010645"},{"relation_name":"is_a","term_name":"familial primary hypomagnesemia with hypercalciuria and nephrocalcinosis","termid":"MONDO:0017624"},{"relation_name":"is_a","term_name":"hereditary macular dystrophy","termid":"MONDO:0020242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005066","MONDO:0005240"],"is_obsolete":false,"name":"renal hypomagnesemia 5 with ocular involvement","secondary_identifiers":["GARD:3451","MESH:C536148","OMIM:248190","MEDGEN:1648449","UMLS:C4721891","DOID:0060881"],"synonyms":[{"name":"FHHNC with severe ocular involvement","type":"exact"},{"name":"FHHNCOI","type":"exact"},{"name":"HOMG5","type":"related"},{"name":"Meier Blumberg Imahorn syndrome","type":"related"},{"name":"Meier-Blumberg-Imahorn syndrome","type":"exact"},{"name":"bilateral macular coloboma with hypercalciuria","type":"exact"},{"name":"familial hypomagnesemia with hypercalciuria, nephrocalcinosis and severe ocular involvement","type":"exact"},{"name":"familial primary hypomagnesemia with hypercalciuria and nephrocalcinosis with severe ocular involvement","type":"related"},{"name":"hypercalciuria-bilateral macular coloboma syndrome","type":"exact"},{"name":"hypomagnesemia 5, renal, with ocular involvement","type":"related"},{"name":"hypomagnesemia, familial, with hypercalciuria, nephrocalcinosis, and severe ocular involvement","type":"related"},{"name":"hypomagnesemia, renal, with ocular involvement","type":"related"},{"name":"idiopathic hypercalciuria with bilateral macular colobomata","type":"related"},{"name":"macular coloboma, bilateral, with hypercalciuria","type":"related"}],"termid":"MONDO:0009548","xrefs":{"Monarch":{"xref_id":"0009548"}}}


id: PR:000027570
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A fungal histone H3.1 that is encoded in the genome of Schizosaccharomyces pombe.","definition_xrefs":["PMID:20929775","PMID:11242054","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fungal histone H3.1","termid":"PR:000027569"},{"relation_name":"is_a","term_name":"core histone (Schizosaccharomyces pombe)","termid":"PR:000041293"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3.1 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC1834.04","synonyms":[{"name":"SPAC1834.04","type":"related"},{"name":"Spom-hht1","type":"exact"}],"termid":"PR:000027570"}


id: FYPO:0007398
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which signaling via a MAP kinase cascade that is activated in response to stress is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","GO:0051403"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular response to stress during vegetative growth","termid":"FYPO:0000968"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0000002","FYPO:0001312","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal stress-activated MAPK cascade","synonyms":[{"name":"normal MAPK signalling in response to stress","type":"exact"},{"name":"normal stress-activated MAPK cascade during mitotic cell cycle","type":"related"},{"name":"normal stress-activated MAPK cascade during vegetative growth","type":"exact"},{"name":"normal stress-activated MAPK signaling pathway","type":"exact"}],"termid":"FYPO:0007398"}


id: PBO:0043991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondroitin sulfate N-acetylgalactosaminyltransferase 1","termid":"PBO:0043991"}


id: GO:0036157
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Outer arm structure present on the outer doublet microtubules of ciliary and flagellar axonemes. Outer dynein arms contain 2-3 heavy chains, two or more intermediate chains and a cluster of 4-8 light chains. Inner and outer dynein arms have different functions in the generation of microtubule-based motility.","definition_xrefs":["GOC:BHF","GOC:vk","PMID:6218174","PMID:2557057"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axonemal dynein complex","termid":"GO:0005858"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0015630","GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"outer dynein arm","synonyms":[{"name":"outer dynein arm complex","type":"exact"}],"termid":"GO:0036157"}


id: MONDO:0001375
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm involving the trigone of urinary bladder.","direct_ancestors":[{"relation_name":"is_a","term_name":"bladder dome cancer","termid":"MONDO:0001380"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"bladder trigone cancer","secondary_identifiers":["UMLS:C0496826","SCTID:188239000","MEDGEN:635606","DOID:11813","ICD9:188.0"],"synonyms":[{"name":"cancer of trigone of urinary bladder","type":"exact"},{"name":"malignant neoplasm of trigone of urinary bladder","type":"exact"},{"name":"malignant trigone of urinary bladder neoplasm","type":"exact"},{"name":"trigone of urinary bladder cancer","type":"exact"}],"termid":"MONDO:0001375","xrefs":{"Monarch":{"xref_id":"0001375"}}}


id: PBO:0047006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A9","termid":"PBO:0047006"}


id: PBO:0057007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 99b","termid":"PBO:0057007"}


id: PBO:0071974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 pseudogene 2","termid":"PBO:0071974"}


id: GO:0035688
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The passage of a T-helper 1 cell between the tight junctions of endothelial cells lining blood vessels, typically the fourth and final step of cellular extravasation. A T-helper 1 cell is a CD4-positive, alpha-beta T cell that has the phenotype T-bet-positive and produces interferon-gamma.","definition_xrefs":["CL:0000545","PMID:10477596","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"helper T cell diapedesis","termid":"GO:0035685"},{"relation_name":"part_of","term_name":"T-helper 1 cell extravasation","termid":"GO:0035687"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T-helper 1 cell diapedesis","synonyms":[{"name":"Th1 cell diapedesis","type":"exact"}],"termid":"GO:0035688"}


id: PBO:0000694
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae ATP2","termid":"PBO:0000694"}


id: PBO:0051510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inhibitor of nuclear factor kappa B kinase subunit gamma pseudogene 1","termid":"PBO:0051510"}


id: MONDO:0006090
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-neoplastic polyp that arises from the appendix. It is characterized by the presence of elongated serrated crypts and the absence of atypia or dysplasia.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperplastic polyp","termid":"MONDO:0006249"},{"relation_name":"is_a","term_name":"polyp of large intestine","termid":"MONDO:0021392"},{"relation_name":"is_a","term_name":"disorder of appendix","termid":"MONDO:0056798"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"appendix hyperplastic polyp","secondary_identifiers":["MEDGEN:474394","NCIT:C96416","UMLS:C3272761"],"synonyms":[{"name":"appendix metaplastic polyp","type":"exact"},{"name":"vermiform appendix hyperplastic polyp","type":"exact"}],"termid":"MONDO:0006090","xrefs":{"Monarch":{"xref_id":"0006090"}}}


id: PBO:0077893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TP53RK binding protein pseudogene 2","termid":"PBO:0077893"}


id: PBO:0064364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyamine modulated factor 1 binding protein 1","termid":"PBO:0064364"}


id: PBO:0071575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35 pseudogene 4","termid":"PBO:0071575"}


id: GO:0031647
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that affects the structure and integrity of a protein, altering the likelihood of its degradation or aggregation.","definition_xrefs":["GOC:dph","GOC:mah","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biological quality","termid":"GO:0065008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of protein stability","termid":"GO:0031647"}


id: GO:0140962
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of a chemical within extracellular body fluids, such as blood, xylem or phloem, of a multicellular organism. This is distinct from maintenance of cellular homeostasis, which occurs within a cell.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal-level homeostasis","termid":"GO:0048871"},{"relation_name":"is_a","term_name":"chemical homeostasis","termid":"GO:0048878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"multicellular organismal-level chemical homeostasis","synonyms":[{"name":"multicellular organism level chemical homeostasis","type":"exact"},{"name":"organismal level chemical homeostasis","type":"exact"}],"termid":"GO:0140962"}


id: PBO:0072275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S23 pseudogene 4","termid":"PBO:0072275"}


id: PBO:0079044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Val (anticodon CAC) 1-6","termid":"PBO:0079044"}


id: MONDO:1012630
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any rod-cone dysplasia that occurs in dogs due to a mutation in the PDE6B gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"rod-cone dysplasia, dog","termid":"MONDO:1012246"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rod-cone dysplasia 1, PDE6B-related, dog","secondary_identifiers":["OMIA:000882-9615"],"synonyms":[{"name":"retinal atrophy-rod-cone dysplasia 1, dog","type":"related"}],"termid":"MONDO:1012630","xrefs":{"Monarch":{"xref_id":"1012630"}}}


id: PBO:0071541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 6","termid":"PBO:0071541"}


id: PBO:0059609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 21","termid":"PBO:0059609"}


id: MONDO:0004072
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete protoplasmic astrocytoma (obsolete MONDO:0004072)","termid":"MONDO:0004072","xrefs":{"Monarch":{"xref_id":"0004072"}}}


id: FYPO:0004681
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of the mature polyadenylated 5.8S rRNA measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased mature 5.8S rRNA level","termid":"FYPO:0001138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased polyadenylated 5.8S rRNA level","synonyms":[{"name":"decreased 5.8S rRNA level during mitotic cell cycle","type":"related"},{"name":"decreased mature polyadenylated 5.8S rRNA transcript level","type":"exact"},{"name":"decreased polyadenylated 5.8S rRNA accumulation","type":"related"},{"name":"decreased polyadenylated 5.8S rRNA level during vegetative growth","type":"exact"},{"name":"decreased polyadenylated 5.8S rRNA transcript level","type":"exact"},{"name":"reduced polyadenylated 5.8S rRNA level","type":"exact"}],"termid":"FYPO:0004681"}


id: PR:O14216
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA replication regulator sld2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PMID:11937031","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA replication regulator sld2","termid":"PR:000027523"},{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication regulator sld2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6B12.11","secondary_identifiers":["UniProtKB:O14216","PR:000027524"],"synonyms":[{"name":"DNA replication regulator drc1","type":"exact"},{"name":"SPAC6B12.11","type":"related"},{"name":"Spom972h-SLD2","type":"exact"}],"termid":"PR:O14216"}


id: PBO:0110497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-phase kinase associated protein 1 pseudogene 4","termid":"PBO:0110497"}


id: MONDO:0018521
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A squamous cell carcinoma that involves the pancreas.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"squamous cell carcinoma","termid":"MONDO:0005096"},{"relation_name":"is_a","term_name":"exocrine pancreatic carcinoma","termid":"MONDO:0005192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"squamous cell carcinoma of pancreas","secondary_identifiers":["GARD:21776","UMLS:C2675993","DOID:0080323","Orphanet:424039","MEDGEN:393937","NCIT:C173813"],"synonyms":[{"name":"pancreas squamous cell carcinoma","type":"exact"},{"name":"pancreatic squamous cell carcinoma","type":"exact"},{"name":"squamous cell carcinoma of the pancreas","type":"related"}],"termid":"MONDO:0018521","xrefs":{"Monarch":{"xref_id":"0018521"}}}


id: PBO:0053659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 836","termid":"PBO:0053659"}


id: PR:P22190
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPMIT.03 gene.","definition_xrefs":["UniProtKB:P22190","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized cox1 intron-2 37.2 kDa protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPMIT.03","synonyms":[{"name":"Spom972h-SPMIT.03","type":"exact"},{"name":"maturase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P22190"}


id: GO:0002249
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process contributing to lymphocyte anergy, a state of functional inactivation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tolerance induction","termid":"GO:0002507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lymphocyte anergy","termid":"GO:0002249"}


id: PBO:0082767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the sorting and assembly machinery (SAM) complex; the SAM (or TOB) complex is located in the mitochondrial outer membrane; the complex binds precursors of beta-barrel proteins and facilitates their insertion into the outer membrane","termid":"PBO:0082767"}


id: GO:0019212
data:
  {"annotated_genes":["SJAG_03272","SJAG_03309","SJAG_04627","SJAG_02380","SJAG_04999"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71977,91153],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004864"},{"annotations":[89621,77736,76291],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004865"}]},"cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of a phosphatase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme inhibitor activity","termid":"GO:0004857"},{"relation_name":"is_a","term_name":"phosphatase regulator activity","termid":"GO:0019208"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02380":null,"SJAG_03272":null,"SJAG_03309":null,"SJAG_04627":null,"SJAG_04999":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0003674","GO:0098772","GO:0030234","GO:0140678","GO:0004857"],"is_obsolete":false,"name":"phosphatase inhibitor activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0019212","terms_by_termid":{"GO:0004864":null,"GO:0004865":null}}


id: PBO:0039560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 53","termid":"PBO:0039560"}


id: MONDO:0021736
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the sigmoid colon and rectum.","definition_xrefs":["NCIT:C34950"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proctocolitis","termid":"MONDO:0024278"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0005046"],"is_obsolete":false,"name":"proctosigmoiditis","secondary_identifiers":["UMLS:C0033252","MEDGEN:18653","ICD9:569.89","SCTID:41364008"],"synonyms":[{"name":"Proctosigmoiditis","type":"related"},{"name":"Rectosigmoiditis","type":"related"},{"name":"proctosigmoiditis","type":"exact"},{"name":"rectosigmoiditis","type":"related"}],"termid":"MONDO:0021736","xrefs":{"Monarch":{"xref_id":"0021736"}}}


id: PBO:0048035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibronectin type III and SPRY domain containing 2","termid":"PBO:0048035"}


id: GO:0106184
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of other compounds not included in EC:7.1 through EC:7.5 .","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocation activity acting on other compounds (obsolete GO:0106184)","termid":"GO:0106184"}


id: GO:1905584
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in an outer hair cell.","definition_xrefs":["GO_REF:0000085","PMID:24472721","PMID:12062759","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron apoptotic process","termid":"GO:0051402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"outer hair cell apoptotic process","synonyms":[{"name":"cochlear outer hair cell apoptosis","type":"narrow"},{"name":"cochlear outer hair cell apoptotic process","type":"exact"},{"name":"outer hair cell apoptosis","type":"narrow"}],"termid":"GO:1905584"}


id: PBO:0081046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCHC-type containing 2","termid":"PBO:0081046"}


id: MONDO:0034901
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete ATP13A2-related parkinsonism (obsolete MONDO:0034901)","secondary_identifiers":["Orphanet:514980"],"termid":"MONDO:0034901","xrefs":{"Monarch":{"xref_id":"0034901"}}}


id: PBO:0079508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin pseudogene 6","termid":"PBO:0079508"}


id: MONDO:0013019
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete spondyloepimetaphyseal dysplasia, Pakistani type (obsolete MONDO:0013019)","termid":"MONDO:0013019","xrefs":{"Monarch":{"xref_id":"0013019"}}}


id: PBO:0000820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome subunit Rrp40 (predicted)","termid":"PBO:0000820"}


id: MONDO:0010223
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"recessive X-linked ichthyosis","termid":"MONDO:0010622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066","MONDO:0005093"],"is_obsolete":false,"name":"ichthyosis, X-linked, without steroid sulfatase deficiency","secondary_identifiers":["UMLS:C1848387","GARD:15250","OMIM:300001","MEDGEN:341213","MESH:C564729"],"synonyms":[{"name":"ichthyosis, X-linked, without steroid sulfatase deficiency","type":"exact"}],"termid":"MONDO:0010223","xrefs":{"Monarch":{"xref_id":"0010223"}}}


id: PBO:0039315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"allantoicase","termid":"PBO:0039315"}


id: SO:0000882
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing the alteration of codon meaning.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"recoded","termid":"SO:0000881"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"codon_redefined","synonyms":[{"name":"codon redefined","type":"exact"}],"termid":"SO:0000882"}


id: MONDO:0017108
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"isolated cerebellar vermis agenesis","termid":"MONDO:0017107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0020022"}],"interesting_parent_ids":["MONDO:0020022"],"is_obsolete":false,"name":"isolated total cerebellar vermis agenesis","secondary_identifiers":["MEDGEN:1842540","Orphanet:269206","GARD:20991","UMLS:C5680781"],"termid":"MONDO:0017108","xrefs":{"Monarch":{"xref_id":"0017108"}}}


id: MONDO:0006970
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A concretion in the salivary gland.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"salivary gland disorder","termid":"MONDO:0001142"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sialolithiasis","secondary_identifiers":["SCTID:28826002","UMLS:C0036091","ICD10CM:K11.5","ICD9:527.5","DOID:12905","icd11.foundation:1984849248","MedDRA:10040631","MEDGEN:48536","MESH:D015494","EFO:1001180"],"synonyms":[{"name":"Stone of salivary gland or duct","type":"exact"},{"name":"salivary gland Stone","type":"exact"},{"name":"sialolith","type":"exact"}],"termid":"MONDO:0006970","xrefs":{"Monarch":{"xref_id":"0006970"}}}


id: GO:0010863
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the rate of phospholipase C activity.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of phospholipase C activity (obsolete GO:0010863)","termid":"GO:0010863"}


id: PBO:0074305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLX4 interacting protein","termid":"PBO:0074305"}


id: GO:0033442
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes an AAC codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003723","GO:0003674","GO:0060090","GO:0005488"],"is_obsolete":false,"name":"AAC codon-amino acid adaptor activity","synonyms":[{"name":"asparagine tRNA","type":"related"}],"termid":"GO:0033442"}


id: GO:0047389
data:
  {"annotated_genes":["SJAG_00622"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73370],"is_not":false,"summary":null,"term":"GO:0047389"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + L-1-glycero-3-phosphocholine = glycerol-3-phosphate + choline.","definition_xrefs":["EC:3.1.4.2","MetaCyc:3.1.4.2-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoric diester hydrolase activity","termid":"GO:0008081"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"glycerophosphocholine phosphodiesterase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["RHEA:16061","Reactome:R-HSA-6814132"],"synonyms":[{"name":"glycerolphosphorylcholine phosphodiesterase activity","type":"related"},{"name":"glycerophosphinicocholine diesterase activity","type":"related"},{"name":"glycerophosphohydrolase activity","type":"related"},{"name":"glycerylphosphorylcholinediesterase activity","type":"related"},{"name":"sn-glycero-3-phosphocholine glycerophosphohydrolase activity","type":"related"},{"name":"sn-glycero-3-phosphorylcholine diesterase activity","type":"related"}],"termid":"GO:0047389","terms_by_termid":{"GO:0047389":null}}


id: PBO:0039187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"A-kinase anchoring protein 17B, pseudogene","termid":"PBO:0039187"}


id: PBO:0079439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tu translation elongation factor, mitochondrial","termid":"PBO:0079439"}


id: PBO:0089631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphthine synthase Dph5","termid":"PBO:0089631"}


id: PBO:0081118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger AN1-type containing 6 pseudogene 1","termid":"PBO:0081118"}


id: PBO:0004714
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-T (predicted)","termid":"PBO:0004714"}


id: PBO:0090600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial (zinc or iron) ion transmembrane transporter Mmt1","termid":"PBO:0090600"}


id: GO:0046460
data:
  {"annotated_genes":["SJAG_03609","SJAG_03162","SJAG_02763","SJAG_04041"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78745,76250,73058,91805],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019432"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of neutral lipids, lipids only soluble in solvents of very low polarity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neutral lipid metabolic process","termid":"GO:0006638"},{"relation_name":"is_a","term_name":"lipid biosynthetic process","termid":"GO:0008610"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02763":null,"SJAG_03162":null,"SJAG_03609":null,"SJAG_04041":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"neutral lipid biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"neutral lipid anabolism","type":"exact"},{"name":"neutral lipid biosynthesis","type":"exact"},{"name":"neutral lipid formation","type":"exact"},{"name":"neutral lipid synthesis","type":"exact"}],"termid":"GO:0046460","terms_by_termid":{"GO:0019432":null}}


id: PBO:0062820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"organic solute carrier partner 1","termid":"PBO:0062820"}


id: GO:0035758
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to chemokine (C-C motif) ligand 21.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C-C chemokine binding","termid":"GO:0019957"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"chemokine (C-C motif) ligand 21 binding","synonyms":[{"name":"CCL21 binding","type":"exact"}],"termid":"GO:0035758"}


id: MONDO:0015943
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Eosinophilic granulomatosis with polyangiitis (EGPA), previously known as Churg-Strauss syndrome, is a systemic vasculitis of small-to medium vessels, characterized by asthma, transient pulmonary infiltrates, and hypereosinophilia.","definition_xrefs":["Orphanet:183"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete systemic inflammatory disease associated with an acquired peripheral neuropathy (obsolete MONDO:0016177)","termid":"MONDO:0016177"},{"relation_name":"excluded_subClassOf","term_name":"obsolete non-familial rare disease with dilated cardiomyopathy (obsolete MONDO:0017952)","termid":"MONDO:0017952"},{"relation_name":"excluded_subClassOf","term_name":"obsolete secondary glomerular disease (obsolete MONDO:0019724)","termid":"MONDO:0019724"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"granulomatosis with polyangiitis","termid":"MONDO:0012105"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005240"],"is_obsolete":false,"name":"eosinophilic granulomatosis with polyangiitis","secondary_identifiers":["MEDGEN:3088","UMLS:C0008728","MedDRA:10048594","ICD10CM:M30.1","NORD:973","DOID:3049","NANDO:2200427","EFO:0007208","MESH:D015267","icd11.foundation:835880885","NANDO:1200264","SCTID:82275008","NCIT:C34481","GARD:6111"],"synonyms":[{"name":"CSS","type":"exact"},{"name":"Churg Strauss Syndrome","type":"exact"},{"name":"Churg Strauss syndrome","type":"exact"},{"name":"Churg-Strauss syndrome","type":"exact"},{"name":"Churg-Strauss vasculitis","type":"exact"},{"name":"EGPA","type":"exact"},{"name":"allergic angiitides","type":"exact"},{"name":"allergic angiitides, granulomatous","type":"exact"},{"name":"allergic angiitis","type":"exact"},{"name":"allergic angiitis and granulomatosis","type":"exact"},{"name":"allergic angiitis, granulomatous","type":"exact"},{"name":"allergic granulomatoses","type":"exact"},{"name":"allergic granulomatosis","type":"exact"},{"name":"allergic granulomatosis angiitis","type":"exact"},{"name":"allergic granulomatous Angiitides","type":"exact"},{"name":"allergic granulomatous and angiitis","type":"exact"},{"name":"allergic granulomatous angiitis","type":"exact"},{"name":"angiitides, allergic","type":"exact"},{"name":"angiitides, allergic granulomatous","type":"exact"},{"name":"angiitides, granulomatous allergic","type":"exact"},{"name":"angiitis, allergic","type":"exact"},{"name":"angiitis, allergic granulomatous","type":"exact"},{"name":"angiitis, granulomatous allergic","type":"exact"},{"name":"eosinophilic granulomatous Vasculitides","type":"exact"},{"name":"eosinophilic granulomatous vasculitis","type":"exact"},{"name":"granulomatoses, allergic","type":"exact"},{"name":"granulomatosis, allergic","type":"exact"},{"name":"granulomatous allergic Angiitides","type":"exact"},{"name":"granulomatous allergic angiitis","type":"exact"},{"name":"granulomatous angiitides, allergic","type":"exact"},{"name":"granulomatous angiitis, allergic","type":"exact"},{"name":"granulomatous vasculitides, eosinophilic","type":"exact"},{"name":"granulomatous vasculitis, eosinophilic","type":"exact"},{"name":"syndrome, Churg-Strauss","type":"exact"},{"name":"vasculitides, eosinophilic granulomatous","type":"exact"},{"name":"vasculitis, Churg Strauss","type":"exact"},{"name":"vasculitis, Churg-Strauss","type":"exact"},{"name":"vasculitis, eosinophilic granulomatous","type":"exact"}],"termid":"MONDO:0015943","xrefs":{"Monarch":{"xref_id":"0015943"}}}


id: GO:1901361
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of organic cyclic compound.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete organic cyclic compound catabolic process (obsolete GO:1901361)","synonyms":[{"name":"organic cyclic compound breakdown","type":"exact"},{"name":"organic cyclic compound catabolism","type":"exact"},{"name":"organic cyclic compound degradation","type":"exact"}],"termid":"GO:1901361"}


id: GO:0033389
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane, from arginine via agmatine.","definition_xrefs":["MetaCyc:PWY-40","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"putrescine biosynthetic process from arginine","termid":"GO:0033388"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"putrescine biosynthetic process from arginine, via agmatine","synonyms":[{"name":"putrescine anabolism from arginine, using agmatinase","type":"exact"},{"name":"putrescine biosynthesis from arginine, using agmatinase","type":"exact"},{"name":"putrescine biosynthetic process from arginine, using agmatinase","type":"exact"},{"name":"putrescine formation from arginine, using agmatinase","type":"exact"},{"name":"putrescine synthesis from arginine, using agmatinase","type":"exact"}],"termid":"GO:0033389"}


id: MONDO:0013983
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive hypohidrotic ectodermal dysplasia","termid":"MONDO:0016619"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0006025"],"is_obsolete":false,"name":"ectodermal dysplasia 11B, hypohidrotic/hair/tooth type, autosomal recessive","secondary_identifiers":["DOID:0111654","GARD:15885","MEDGEN:761671","OMIM:614941","UMLS:C3539920"],"synonyms":[{"name":"ECTD11B","type":"related"},{"name":"ectodermal dysplasia 11B, hypohidrotic/hair/tooth type, autosomal recessive","type":"exact"},{"name":"ectodermal dysplasia, anhidrotic","type":"related"},{"name":"ectodermal dysplasia, hypohidrotic","type":"related"}],"termid":"MONDO:0013983","xrefs":{"Monarch":{"xref_id":"0013983"}}}


id: PBO:0112991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Adaptor in Kre33p-mediated N4-acetylcytidine modification of tRNAs; tRNA-binding protein required for the formation of the modified nucleoside N(4)-acetylcytidine (ac4C) in serine and leucine tRNAs but not required for the same modification in 18S rRNA; protein abundance increases in response to DNA replication stress; contains a conserved THUMP domain, and is homologous to human THUMPD1","termid":"PBO:0112991"}


id: PBO:0066658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal oxygenase 2","termid":"PBO:0066658"}


id: SO:0001818
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence_variant which is predicted to change the protein encoded in the coding sequence.","definition_xrefs":["EBI:gr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coding_sequence_variant","termid":"SO:0001580"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein_altering_variant","secondary_identifiers":["http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"VEP:protein_altering_variant","type":"exact"},{"name":"protein altering variant","type":"exact"}],"termid":"SO:0001818"}


id: PBO:0085661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in negative regulation of iron regulon transcription; forms an iron independent complex with Fra2p, Grx3p, and Grx4p; cytosolic; mutant fails to repress transcription of iron regulon and is defective in spore formation","termid":"PBO:0085661"}


id: PBO:0038802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM7, ADAMDEC1 and ADAM28 antisense RNA 1","termid":"PBO:0038802"}


id: PBO:0089250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCAAT-binding factor, Noc1 related","termid":"PBO:0089250"}


id: MONDO:0000330
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A bacterial infection caused by Rickettsia typhi.","definition_xrefs":["Wikipedia:Murine_typhus"],"direct_ancestors":[{"relation_name":"is_a","term_name":"typhus","termid":"MONDO:0001246"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endemic typhus","secondary_identifiers":["MedDRA:10028282","MESH:D014437","GARD:19033","NCIT:C84688","MEDGEN:11977","Orphanet:83315","UMLS:C0041472","icd11.foundation:4659958","DOID:0050481"],"synonyms":[{"name":"Rickettsia felis spotted fever","type":"exact"},{"name":"cat flea rickettsiosis","type":"exact"},{"name":"endemic flea-borne typhus","type":"exact"},{"name":"endemic typhus fever","type":"exact"},{"name":"fleaborne typhus","type":"exact"},{"name":"murine typhus","type":"exact"},{"name":"rat-flea typhus","type":"exact"},{"name":"shop typhus","type":"related"},{"name":"toulon typhus","type":"exact"},{"name":"urban typhus","type":"exact"},{"name":"urban typhus of Malaya","type":"exact"}],"termid":"MONDO:0000330","xrefs":{"Monarch":{"xref_id":"0000330"}}}


id: SO:0000145
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"codon","termid":"SO:0000360"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recoded_codon","synonyms":[{"name":"recoded codon","type":"exact"}],"termid":"SO:0000145"}


id: GO:0032217
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of riboflavin from one side of a membrane to the other. Riboflavin (vitamin B2) is a water-soluble B-complex vitamin, converted in the cell to FMN and FAD, cofactors required for the function of flavoproteins.","definition_xrefs":["GOC:rn","PMID:16204239"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transmembrane transporter activity","termid":"GO:0008514"},{"relation_name":"is_a","term_name":"vitamin transmembrane transporter activity","termid":"GO:0090482"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"riboflavin transmembrane transporter activity","secondary_identifiers":["Reactome:R-HSA-3165230"],"synonyms":[{"name":"riboflavin transporter activity","type":"related"}],"termid":"GO:0032217"}


id: PBO:0072955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stearoyl-CoA desaturase 5","termid":"PBO:0072955"}


id: PBO:0058355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4728","termid":"PBO:0058355"}


id: PBO:0084697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial external NADH dehydrogenase; type II NAD(P)H:quinone oxidoreductase that catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p provide cytosolic NADH to the mitochondrial respiratory chain; NDE1 has a paralog, NDE2, that arose from the whole genome duplication","termid":"PBO:0084697"}


id: PATO:0002269
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality of the collection or massing of one physical object within another physical object.","definition_xrefs":["PATOC:CVC"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"accumulation","synonyms":[{"name":"pooled","type":"related"}],"termid":"PATO:0002269"}


id: PATO:0000133
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object.","definition_xrefs":["PATOC:JE"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orientation","secondary_identifiers":["PATO:0000137"],"synonyms":[{"name":"amount of rotation","type":"related"},{"name":"angle","type":"related"},{"name":"angular magnitude","type":"related"},{"name":"angular placement","type":"exact"},{"name":"plane angle","type":"related"}],"termid":"PATO:0000133"}


id: MONDO:0016117
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete muscular lipidosis (obsolete MONDO:0016117)","secondary_identifiers":["ICD9:359.89","Orphanet:206953"],"synonyms":[{"name":"lipid storage myopathy","type":"exact"}],"termid":"MONDO:0016117","xrefs":{"Monarch":{"xref_id":"0016117"}}}


id: GO:0000923
data:
  {"annotated_genes":["SJAG_01215","SJAG_02609","SJAG_00856","SJAG_03073","SJAG_07018","SJAG_03835","SJAG_01756","SJAG_02761","SJAG_02886","SJAG_03264","SJAG_02737","SJAG_03052"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[101870,102154,102770,103219,104115,108253,110659,111419,112401,114599,118781,119034],"is_not":false,"summary":null,"term":"GO:0000923"}]},"cv_name":"cellular_component","definition":"A microtubule organizing center formed by a band of gamma-tubulin that is recruited to a circumferential band of F-actin at the midpoint of a cell and which nucleates microtubules from the cell division site at the end of mitosis.","definition_xrefs":["PMID:11792817"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule organizing center","termid":"GO:0005815"},{"relation_name":"part_of","term_name":"cell division site","termid":"GO:0032153"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00856":null,"SJAG_01215":null,"SJAG_01756":null,"SJAG_02609":null,"SJAG_02737":null,"SJAG_02761":null,"SJAG_02886":null,"SJAG_03052":null,"SJAG_03073":null,"SJAG_03264":null,"SJAG_03835":null,"SJAG_07018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0005575","GO:0015630"],"is_obsolete":false,"name":"equatorial microtubule organizing center","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"EMTOC","type":"exact"},{"name":"equatorial microtubule organising centre","type":"exact"}],"termid":"GO:0000923","terms_by_termid":{"GO:0000923":null}}


id: PR:Q10426
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rik1 gene.","definition_xrefs":["UniProtKB:Q10426","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatin modification-related protein rik1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC11E10.08","synonyms":[{"name":"Spom972h-rik1","type":"exact"},{"name":"silencing protein rik1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10426"}


id: PBO:0064538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POM121 transmembrane nucleoporin B (pseudogene)","termid":"PBO:0064538"}


id: MONDO:0010302
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hypomelanosis of Ito (HI) is a multisystemic neurocutaneous condition with hypopigmented skin lesions along the Blaschko lines.","definition_xrefs":["Orphanet:435"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"},{"relation_name":"is_a","term_name":"hypopigmentation of the skin","termid":"MONDO:0019290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005328"],"is_obsolete":false,"name":"Ito hypomelanosis","secondary_identifiers":["DOID:3156","GARD:2992","NORD:1274","MEDGEN:5920","OMIM:300337","UMLS:C0022283"],"synonyms":[{"name":"HMI","type":"related"},{"name":"Hypomelanosis of Ito","type":"exact"},{"name":"IPA","type":"related"},{"name":"Incontinentia pigmenti achromians","type":"related"},{"name":"Incontinentia pigmenti type 1","type":"exact"},{"name":"Incontinentia pigmenti type 1 (formerly)","type":"related"},{"name":"Incontinentia pigmenti, type I","type":"related"},{"name":"Incontinentia pigmenti, type I, formerly","type":"related"},{"name":"Ito","type":"related"},{"name":"Ito hypomelanosis","type":"exact"},{"name":"hi syndrome","type":"exact"},{"name":"hypomelanosis of Ito","type":"exact"},{"name":"pigmentary mosaicism, Ito type","type":"exact"}],"termid":"MONDO:0010302","xrefs":{"Monarch":{"xref_id":"0010302"}}}


id: PBO:0060088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 35","termid":"PBO:0060088"}


id: FYPO:0004465
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins is normal (i.e. indistinguishable from wild type) during a cellular response to camptothecin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein phosphorylation during vegetative growth","termid":"FYPO:0000776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal protein phosphorylation during cellular response to camptothecin","synonyms":[{"name":"normal protein phosphorylation during cellular response to CPT","type":"exact"},{"name":"normal protein phosphorylation during cellular response to camptothecin during mitotic cell cycle","type":"related"},{"name":"normal protein phosphorylation during cellular response to camptothecin during vegetative growth","type":"exact"}],"termid":"FYPO:0004465"}


id: GO:0015454
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Active transport of an ion across a membrane, driven by light.","definition_xrefs":["GOC:mtg_transport","PMID:26442282","PMID:23994288"],"direct_ancestors":[{"relation_name":"is_a","term_name":"active monoatomic ion transmembrane transporter activity","termid":"GO:0022853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"light-driven active monoatomic ion transmembrane transporter activity","secondary_identifiers":["TC:3.E"],"synonyms":[{"name":"light absorption-driven transporter","type":"exact"},{"name":"light-driven active ion transmembrane transporter activity","type":"broad"},{"name":"light-driven active transmembrane transporter activity","type":"related"},{"name":"light-driven pumps","type":"exact"}],"termid":"GO:0015454"}


id: PBO:0053316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 32","termid":"PBO:0053316"}


id: GO:0102251
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 10'-apo-beta-carotenal + O2 = 13-apo-beta-carotenone + 4-methylocta-2,4,6-trienedial.","definition_xrefs":["EC:1.13.11.70","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"all-trans-beta-apo-10'-carotenal cleavage oxygenase activity","secondary_identifiers":["MetaCyc:RXN-12393","RHEA:26401"],"termid":"GO:0102251"}


id: MONDO:0017150
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Pulmonary arterial hypertension associated with another disease is a group of conditions that lead to PAH; connective tissue diseases (lupus erythematosus, systemic sclerosis and mixed connective tissues disease), congenital heart disease (Eisenmenger syndrome), HIV infection, portal hypertension, schistosomiasis and chronic hemolytic anemia, which is characterized by elevated pulmonary arterial resistance leading to right heart failure that is progressive and potentially fatal.","definition_xrefs":["Orphanet:275791"],"gene_count":0,"genotype_count":0,"name":"obsolete pulmonary arterial hypertension associated with another disease (obsolete MONDO:0017150)","secondary_identifiers":["NANDO:2201048"],"synonyms":[{"name":"PAH associated with another disease","type":"exact"},{"name":"secondary PAH","type":"exact"}],"termid":"MONDO:0017150","xrefs":{"Monarch":{"xref_id":"0017150"}}}


id: PR:P87320
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- msp1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87320"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein msp1, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1718.06","synonyms":[{"name":"Spom972h-msp1","type":"exact"}],"termid":"PR:P87320"}


id: SO:0000268
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tRNA sequence that has a proline anticodon, and a 3' proline binding region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"proline_tRNA_primary_transcript","termid":"SO:0000225"},{"relation_name":"is_a","term_name":"tRNA","termid":"SO:0000253"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prolyl_tRNA","synonyms":[{"name":"prolyl tRNA","type":"exact"},{"name":"prolyl-transfer RNA","type":"exact"},{"name":"prolyl-transfer ribonucleic acid","type":"exact"}],"termid":"SO:0000268"}


id: GO:0106379
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 8-oxo-(d)RTP + H20 = 8-oxo-(d)RMP + diphosphate + H+.","definition_xrefs":["PMID:11139615"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside triphosphate diphosphatase activity","termid":"GO:0047429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0047429"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0047429","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"8-oxo-(d)RTP hydrolase activity","secondary_identifiers":["Reactome:R-HSA-9731228"],"termid":"GO:0106379"}


id: MONDO:0010767
data:
  {"annotated_genes":["SJAG_00786","SJAG_04663","SJAG_01465","SJAG_03635","SJAG_03286","SJAG_02035","SJAG_04324"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87718,87719,87720,87721,87722,87723,87724],"is_not":false,"summary":null,"term":"MONDO:0010767"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"},{"relation_name":"is_a","term_name":"partial chromosome Y deletion","termid":"MONDO:0015607"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00786":null,"SJAG_01465":null,"SJAG_02035":null,"SJAG_03286":null,"SJAG_03635":null,"SJAG_04324":null,"SJAG_04663":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure, Y-linked, 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:18504","MESH:C564030","UMLS:C1839071","DOID:0070187","MEDGEN:326394","OMIM:415000"],"synonyms":[{"name":"Azf regions","type":"related"},{"name":"SPGFY2","type":"related"},{"name":"azoospermia Factor regions","type":"related"},{"name":"azoospermia, nonobstructive, Y-linked","type":"related"},{"name":"oligospermia, nonobstructive, Y-linked","type":"related"},{"name":"oligozoospermia, nonobstructive, Y-linked","type":"related"},{"name":"spermatogenic arrest, Y-linked","type":"related"},{"name":"spermatogenic failure, Y-linked, 2","type":"exact"},{"name":"spermatogenic failure, Y-linked, 2, Y-linked","type":"exact"},{"name":"spermatogenic failure, Y-linked, type 2","type":"exact"},{"name":"spermatogenic failure, nonobstructive, Y-linked","type":"related"}],"termid":"MONDO:0010767","terms_by_termid":{"MONDO:0010767":null},"xrefs":{"Monarch":{"xref_id":"0010767"}}}


id: GO:0005651
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete exportin (obsolete GO:0005651)","synonyms":[{"name":"exportin","type":"exact"}],"termid":"GO:0005651"}


id: PBO:0091408
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"assembly at damage sites is facilitated by Rad57 independently of Swi5","termid":"PBO:0091408"}


id: PBO:0030589
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_vacuolar_arginine_level","termid":"PBO:0030589"}


id: GO:0051591
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate) stimulus.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to purine-containing compound","termid":"GO:0014074"},{"relation_name":"is_a","term_name":"response to organophosphorus","termid":"GO:0046683"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cAMP","synonyms":[{"name":"response to 3',5' cAMP","type":"exact"},{"name":"response to 3',5'-cAMP","type":"exact"},{"name":"response to adenosine 3',5'-cyclophosphate","type":"exact"},{"name":"response to cyclic AMP","type":"exact"}],"termid":"GO:0051591"}


id: MONDO:0012639
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, complex type of hereditary spastic paraplegia characterized by progressive spastic paraplegia (presenting in early childhood) associated with delayed motor development, severe intellectual disability and joint contractures. A thin corpus callosum is equally noted on brain magnetic resonance imaging. SPG18 is caused by a mutation in the ERLIN2 gene (8p11.2) encoding the protein, Erlin-2.","definition_xrefs":["Orphanet:209951"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complex hereditary spastic paraplegia","termid":"MONDO:0015150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"hereditary spastic paraplegia 18","secondary_identifiers":["DOID:0110771","UMLS:C2749936","MEDGEN:442343","GARD:4922","OMIM:611225","SCTID:732932004","MESH:C567628"],"synonyms":[{"name":"ERLIN2 autosomal recessive complex spastic paraplegia","type":"exact"},{"name":"SPG18","type":"exact"},{"name":"autosomal recessive complex spastic paraplegia caused by mutation in ERLIN2","type":"exact"},{"name":"autosomal recessive spastic paraplegia 18","type":"exact"},{"name":"autosomal recessive spastic paraplegia type 18","type":"exact"},{"name":"hereditary spastic paraplegia type 18","type":"exact"},{"name":"intellectual disability, motor dysfunction and joint contractures","type":"exact"},{"name":"intellectual disability, motor dysfunction, and Joint contractures","type":"related"},{"name":"spastic paraplegia 18","type":"related"},{"name":"spastic paraplegia 18, autosomal recessive","type":"related"}],"termid":"MONDO:0012639","xrefs":{"Monarch":{"xref_id":"0012639"}}}


id: PBO:0045106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diencephalon/mesencephalon homeobox 1","termid":"PBO:0045106"}


id: PBO:0108519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clr6 and histone Rpd3L deacetylase complex LCCL domain subunit Rxt3","termid":"PBO:0108519"}


id: MONDO:0012011
data:
  {"annotated_genes":["SJAG_00210","SJAG_02218"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89070,89071],"is_not":false,"summary":null,"term":"MONDO:0012011"}]},"cv_name":"mondo","definition":"Any coronary artery disease in which the cause of the disease is a mutation in the MEF2A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coronary artery disorder","termid":"MONDO:0005010"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00210":null,"SJAG_02218":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"coronary artery disease, autosomal dominant, 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C564258","OMIM:608320","MEDGEN:330802","UMLS:C1842247"],"synonyms":[{"name":"ADCAD1","type":"related"},{"name":"MEF2A coronary artery disease","type":"exact"},{"name":"coronary artery disease caused by mutation in MEF2A","type":"exact"},{"name":"coronary artery disease with myocardial infarction","type":"related"},{"name":"coronary artery disease, autosomal dominant, 1","type":"exact"},{"name":"coronary artery disease, autosomal dominant, type 1","type":"exact"}],"termid":"MONDO:0012011","terms_by_termid":{"MONDO:0012011":null},"xrefs":{"Monarch":{"xref_id":"0012011"}}}


id: PBO:0073143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC23 homolog A, COPII coat complex component","termid":"PBO:0073143"}


id: RO:0002446
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A biotic interaction relationship in which one partner is an organism and the other partner is inorganic. For example, the relationship between a sponge and the substrate to which is it anchored.","direct_ancestors":[{"relation_name":"is_a","term_name":"biotically_interacts_with","termid":"RO:0002437"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"participates_in_a_abiotic-biotic_interaction_with","synonyms":[{"name":"semibiotically interacts with","type":"related"}],"termid":"RO:0002446"}


id: PBO:0072011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S7 pseudogene 13","termid":"PBO:0072011"}


id: PBO:0017901
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by rat PEMT","termid":"PBO:0017901"}


id: PBO:0046579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 21, envelope","termid":"PBO:0046579"}


id: MONDO:0017357
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory system disorder","termid":"MONDO:0005087"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient hyperammonemia of the newborn","secondary_identifiers":["MEDGEN:541358","Orphanet:289877","GARD:21159","UMLS:C0268549"],"termid":"MONDO:0017357","xrefs":{"Monarch":{"xref_id":"0017357"}}}


id: MONDO:0006111
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-papillary neoplasm of the urinary bladder, whose classification categories include low-grade intraurothelial neoplasia and urothelial carcinoma in situ.","definition_xrefs":["NCIT:C37266"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urinary bladder neoplasm","termid":"MONDO:0004987"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bladder flat intraepithelial lesion","secondary_identifiers":["UMLS:C1332559","DOID:5429","EFO:1000126","MEDGEN:231947"],"synonyms":[{"name":"bladder flat intraepithelial lesion","type":"exact"},{"name":"flat intraepithelial lesion of the bladder","type":"exact"},{"name":"flat intraepithelial lesion of the urinary bladder","type":"exact"},{"name":"urinary bladder flat intraepithelial lesion","type":"exact"}],"termid":"MONDO:0006111","xrefs":{"Monarch":{"xref_id":"0006111"}}}


id: PR:Q9Y7R6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- big1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7R6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein big1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC306.06c","synonyms":[{"name":"Spom972h-big1","type":"exact"}],"termid":"PR:Q9Y7R6"}


id: PBO:0028584
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_cell_during_stationary_phase","termid":"PBO:0028584"}


id: MONDO:0850473
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A diffuse large B-cell lymphoma that is characterized by aneuploidy with TP53 inactivation.","definition_xrefs":["DOID:0081069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diffuse large B-cell lymphoma","termid":"MONDO:0018905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"A53 diffuse large B-cell lymphoma","secondary_identifiers":["NCIT:C187447","MEDGEN:1815990","UMLS:C5707085"],"termid":"MONDO:0850473","xrefs":{"Monarch":{"xref_id":"0850473"}}}


id: GO:1905058
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Any calcium-induced calcium release activity that is involved in regulation of postsynaptic cytosolic calcium ion concentration.","definition_xrefs":["GOC:TermGenie","GO_REF:0000061","PMID:23639769"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium-induced calcium release activity","termid":"GO:0048763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"calcium-induced calcium release activity involved in regulation of postsynaptic cytosolic calcium ion concentration","synonyms":[{"name":"calcium-induced calcium release activity involved in regulation of postsynaptic cytosolic calcium levels","type":"exact"}],"termid":"GO:1905058"}


id: PBO:0086680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; SWAT-GFP and mCherry fusion proteins localize to the nucleus and endoplasmic reticulum respectively; YHR214C-D has a paralog, YAR069C, that arose from a segmental duplication","termid":"PBO:0086680"}


id: MONDO:0001815
data:
  {"annotated_genes":["SJAG_04966","SJAG_03900","SJAG_03098","SJAG_01598","SJAG_04840","SJAG_02680","SJAG_01942","SJAG_01772","SJAG_03551","SJAG_03275","SJAG_04003","SJAG_02007","SJAG_02210","SJAG_00690","SJAG_03244","SJAG_01236"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87164],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014557"},{"annotations":[87185],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012994"},{"annotations":[88327],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0025691"},{"annotations":[87789,87788],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030486"},{"annotations":[87829,87830],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030513"},{"annotations":[88696],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030958"},{"annotations":[88084],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957385"},{"annotations":[86780],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007495"},{"annotations":[88777],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0015003"},{"annotations":[88871],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030676"},{"annotations":[88011],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010334"},{"annotations":[87863],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014889"},{"annotations":[86945],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007493"},{"annotations":[87583],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010747"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"movement disorder","termid":"MONDO:0005395"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00690":null,"SJAG_01236":null,"SJAG_01598":null,"SJAG_01772":null,"SJAG_01942":null,"SJAG_02007":null,"SJAG_02210":null,"SJAG_02680":null,"SJAG_03098":null,"SJAG_03244":null,"SJAG_03275":null,"SJAG_03551":null,"SJAG_03900":null,"SJAG_04003":null,"SJAG_04840":null,"SJAG_04966":null},"genotype_count":0,"is_obsolete":false,"name":"extrapyramidal and movement disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICD9:333.90","DOID:13839","ICD10CM:G20-G26","UMLS:C0477355","MEDGEN:852565"],"termid":"MONDO:0001815","terms_by_termid":{"MONDO:0007493":null,"MONDO:0007495":null,"MONDO:0010334":null,"MONDO:0010747":null,"MONDO:0012994":null,"MONDO:0014557":null,"MONDO:0014889":null,"MONDO:0015003":null,"MONDO:0025691":null,"MONDO:0030486":null,"MONDO:0030513":null,"MONDO:0030676":null,"MONDO:0030958":null,"MONDO:0957385":null},"xrefs":{"Monarch":{"xref_id":"0001815"}}}


id: GO:0010236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of plastoquinone, a lipid-soluble electron-transporting coenzyme present in the chloroplast.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"quinone biosynthetic process","termid":"GO:1901663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"plastoquinone biosynthetic process","secondary_identifiers":["MetaCyc:PWY-1581"],"synonyms":[{"name":"plastoquinone anabolism","type":"exact"},{"name":"plastoquinone biosynthesis","type":"exact"},{"name":"plastoquinone formation","type":"exact"},{"name":"plastoquinone synthesis","type":"exact"}],"termid":"GO:0010236"}


id: PR:P36601
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA repair protein RAD51 homolog 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein rhp51 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC644.14c","secondary_identifiers":["UniProtKB:P36601"],"synonyms":[{"name":"RAD51 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPAC644.14c","type":"related"},{"name":"Spom972h-RAD51","type":"exact"},{"name":"rad51","type":"related"}],"termid":"PR:P36601"}


id: PBO:0109376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 8B","termid":"PBO:0109376"}


id: GO:0035988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of chondrocytes by cell division, resulting in the expansion of their population. A chondrocyte is a polymorphic cell that forms cartilage.","definition_xrefs":["CL:0000138","PMID:21484705","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chondrocyte proliferation","synonyms":[{"name":"cartilage cell proliferation","type":"exact"},{"name":"chondrocyte cell proliferation","type":"exact"}],"termid":"GO:0035988"}


id: MONDO:0016657
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"8p11.2 deletion syndrome is a contiguous gene syndrome characterized by the association of congenital spherocytosis, dysmorphic features, growth delay and hypogonadotropic hypogonadism.","definition_xrefs":["Orphanet:251066"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial deletion of the short arm of chromosome 8","termid":"MONDO:0016890"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"8p11.2 deletion syndrome","secondary_identifiers":["SCTID:719646006","MEDGEN:930174","UMLS:C4304505","GARD:20693"],"synonyms":[{"name":"Del(8)(p11.2)","type":"exact"},{"name":"monosomy 8p11.2","type":"exact"}],"termid":"MONDO:0016657","xrefs":{"Monarch":{"xref_id":"0016657"}}}


id: MONDO:0040674
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"psychosexual disorder","termid":"MONDO:0000947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orgasm disorder","secondary_identifiers":["MEDGEN:10472","UMLS:C0029261","SCTID:82636008","ICD10CM:F52.3"],"synonyms":[{"name":"abnormal orgasm","type":"related"},{"name":"orgasm disorder","type":"exact"},{"name":"orgasmic dysfunction","type":"related"}],"termid":"MONDO:0040674","xrefs":{"Monarch":{"xref_id":"0040674"}}}


id: PBO:0041964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 7","termid":"PBO:0041964"}


id: MONDO:0003109
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A meningioma that affects the foramen magnum.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skull base meningioma","termid":"MONDO:0002998"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"foramen magnum meningioma","secondary_identifiers":["NCIT:C5280","DOID:4708","MEDGEN:232512","UMLS:C1333630"],"synonyms":[{"name":"foramen magnum meningioma (disease)","type":"exact"},{"name":"meningioma (disease) of foramen magnum","type":"exact"},{"name":"meningioma of Foramen magnum","type":"exact"},{"name":"meningioma of the Foramen magnum","type":"exact"}],"termid":"MONDO:0003109","xrefs":{"Monarch":{"xref_id":"0003109"}}}


id: PBO:0067910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 212","termid":"PBO:0067910"}


id: PBO:0050560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HTLV-1 related endogenous sequence","termid":"PBO:0050560"}


id: MONDO:0012109
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"essential hypertension","termid":"MONDO:0001134"},{"relation_name":"excluded_subClassOf","term_name":"essential hypertension, genetic","termid":"MONDO:0007781"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypertension, essential, susceptibility to, 4","secondary_identifiers":["OMIM:608742","MEDGEN:325180","UMLS:C1837479"],"synonyms":[{"name":"Hyt4","type":"related"},{"name":"hypertension, essential, susceptibility to, 4","type":"exact"},{"name":"hypertension, essential, susceptibility to, type 4","type":"exact"}],"termid":"MONDO:0012109","xrefs":{"Monarch":{"xref_id":"0012109"}}}


id: FYPO:0003733
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of alcohol dehydrogenase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal oxidoreductase activity","termid":"FYPO:0000689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000654","FYPO:0001985","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"abnormal alcohol dehydrogenase activity","synonyms":[{"name":"alcohol dehydrogenase (NAD) activity","type":"exact"}],"termid":"FYPO:0003733"}


id: GO:0032901
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of production of a neurotrophin.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neurotrophin production","termid":"GO:0032899"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"neurotrophin production","termid":"GO:0032898"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of neurotrophin production","synonyms":[{"name":"activation of neurotrophin production","type":"narrow"},{"name":"stimulation of neurotrophin production","type":"narrow"},{"name":"up regulation of neurotrophin production","type":"exact"},{"name":"up-regulation of neurotrophin production","type":"exact"},{"name":"upregulation of neurotrophin production","type":"exact"}],"termid":"GO:0032901"}


id: GO:1904027
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of collagen fibril organization.","definition_xrefs":["GO_REF:0000058","PMID:25451920","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of extracellular matrix organization","termid":"GO:1903054"},{"relation_name":"is_a","term_name":"regulation of collagen fibril organization","termid":"GO:1904026"},{"relation_name":"negatively_regulates","term_name":"collagen fibril organization","termid":"GO:0030199"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of collagen fibril organization","synonyms":[{"name":"down regulation of collagen fibril organisation","type":"exact"},{"name":"down regulation of collagen fibril organization","type":"exact"},{"name":"down regulation of fibrillar collagen organization","type":"exact"},{"name":"down-regulation of collagen fibril organisation","type":"exact"},{"name":"down-regulation of collagen fibril organization","type":"exact"},{"name":"down-regulation of fibrillar collagen organization","type":"exact"},{"name":"downregulation of collagen fibril organisation","type":"exact"},{"name":"downregulation of collagen fibril organization","type":"exact"},{"name":"downregulation of fibrillar collagen organization","type":"exact"},{"name":"inhibition of collagen fibril organisation","type":"narrow"},{"name":"inhibition of collagen fibril organization","type":"narrow"},{"name":"inhibition of fibrillar collagen organization","type":"narrow"},{"name":"negative regulation of collagen fibril organisation","type":"exact"},{"name":"negative regulation of fibrillar collagen organization","type":"exact"}],"termid":"GO:1904027"}


id: MONDO:0018616
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Central serous chorioretinopathy is a disease that causes fluid to build up under the retina, the back part of the inner eye that sends sight information to the brain. The fluid leaks from thechoroid (theblood vessel layer under the retina). The cause of this condition is unknown but stress can be a risk factor. Signs and symptoms include dim and blurred blind spot in the center of vision, distortion of straight linesand seeingobjectsas smaller or farther away. Many cases of central serous chorioretinopathy improve without treatment after 1-2 months. Laser treatment may be an option for other individuals.","direct_ancestors":[{"relation_name":"is_a","term_name":"retinal disorder","termid":"MONDO:0005283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"central serous chorioretinopathy","secondary_identifiers":["ICD10CM:H35.71","MESH:D056833","SCTID:312956001","ICD9:362.41","GARD:200","UMLS:C0730328","Orphanet:443079","NCIT:C115124","MEDGEN:147591","icd11.foundation:1623925689"],"synonyms":[{"name":"CSC","type":"exact"},{"name":"CSCR","type":"exact"},{"name":"central serous chorioretinopathy after bone marrow transplantation","type":"related"},{"name":"central serous choroidopathy","type":"related"},{"name":"central serous retinopathy","type":"exact"}],"termid":"MONDO:0018616","xrefs":{"Monarch":{"xref_id":"0018616"}}}


id: GO:0016945
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any activity that modulates the rate of transcription elongation, the addition of ribonucleotides to an RNA molecule catalyzed by RNA polymerase III following transcription initiation.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA polymerase III transcription elongation factor activity (obsolete GO:0016945)","synonyms":[{"name":"Pol III transcription elongation factor activity","type":"exact"},{"name":"RNA polymerase III transcription elongation factor activity","type":"exact"}],"termid":"GO:0016945"}


id: PBO:0111765
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HEAT repeat","termid":"PBO:0111765"}


id: MONDO:0006325
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A melanoma that arises from the structures of the eye or ocular adnexa.","definition_xrefs":["NCIT:C8562"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"non-cutaneous melanoma","termid":"MONDO:0006320"},{"relation_name":"is_a","term_name":"ocular cancer","termid":"MONDO:0002236"},{"relation_name":"is_a","term_name":"melanoma","termid":"MONDO:0005105"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0004992"],"is_obsolete":false,"name":"ocular melanoma","secondary_identifiers":["EFO:1000403","DOID:1752","ONCOTREE:OM","MEDGEN:107846","UMLS:C0558356"],"synonyms":[{"name":"OM","type":"related"},{"name":"eye melanoma","type":"exact"},{"name":"eye melanoma (disease)","type":"exact"},{"name":"eyeball of camera-type eye melanoma","type":"exact"},{"name":"eyeball of camera-type eye melanoma (disease)","type":"exact"},{"name":"melanoma (disease) of eyeball of camera-type eye","type":"exact"},{"name":"melanoma of eye","type":"exact"},{"name":"melanoma of the eye","type":"exact"},{"name":"ocular melanoma","type":"exact"}],"termid":"MONDO:0006325","xrefs":{"Monarch":{"xref_id":"0006325"}}}


id: GO:0016122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving xanthophylls, oxygen-containing carotenoids.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carotenoid metabolic process","termid":"GO:0016116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"xanthophyll metabolic process","synonyms":[{"name":"xanthophyll metabolism","type":"exact"}],"termid":"GO:0016122"}


id: PBO:0048663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol kinase 5","termid":"PBO:0048663"}


id: PBO:0060999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NHL repeat containing 4","termid":"PBO:0060999"}


id: MONDO:0018639
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Caudal regression-sirenomelia spectrum is a group of rare genetic developmental defect during embryogenesis disorders characterized by varying degrees of caudal abdomen, pelvic, renal, anorectal, urogenital and/or lumbosacral spine malformations, with or without lower limb fusion. Phenotype is highly variable ranging from minor forms with isolated coccygeal agenesis to severe forms presenting with a single rudimentary limb. Central nervous system anomalies have also been reported.","definition_xrefs":["Orphanet:444941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caudal regression-sirenomelia spectrum","secondary_identifiers":["MEDGEN:1843168","UMLS:C5681198","GARD:21862"],"termid":"MONDO:0018639","xrefs":{"Monarch":{"xref_id":"0018639"}}}


id: GO:0006353
data:
  {"annotated_genes":["SJAG_02156","SJAG_04527","SJAG_04855","SJAG_03126","SJAG_03689","SJAG_03624","SJAG_00637","SJAG_04106","SJAG_01713","SJAG_03923","SJAG_03761","SJAG_04006","SJAG_02037","SJAG_04942","SJAG_02922","SJAG_03179","SJAG_02242"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113796],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1904595"},{"annotations":[117828,104074,116056,98170],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006363"},{"annotations":[81049,117829,76082,75994,109509,57563,61574],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006369"},{"annotations":[109278,66316,99029,61928],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030847"},{"annotations":[61798,117830,101675,57124],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006386"}]},"cv_name":"biological_process","definition":"The completion of transcription: the RNA polymerase pauses, the RNA-DNA hybrid dissociates, followed by the release of the RNA polymerase from its DNA template.","definition_xrefs":["PMID:30978344","GOC:txnOH","PMID:18280161","PMID:15020047"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA biosynthetic process","termid":"GO:0032774"},{"relation_name":"part_of","term_name":"DNA-templated transcription","termid":"GO:0006351"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00637":null,"SJAG_01713":null,"SJAG_02037":null,"SJAG_02156":null,"SJAG_02242":null,"SJAG_02922":null,"SJAG_03126":null,"SJAG_03179":null,"SJAG_03624":null,"SJAG_03689":null,"SJAG_03761":null,"SJAG_03923":null,"SJAG_04006":null,"SJAG_04106":null,"SJAG_04527":null,"SJAG_04855":null,"SJAG_04942":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006351","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"DNA-templated transcription termination","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["GO:0001125"],"synonyms":[{"name":"DNA-dependent transcription, termination","type":"exact"},{"name":"DNA-templated transcription, termination","type":"exact"},{"name":"termination of DNA-dependent transcription","type":"exact"},{"name":"termination of transcription, DNA-dependent","type":"exact"},{"name":"transcription termination factor activity","type":"related"},{"name":"transcription termination from bacterial-type RNA polymerase promoter","type":"narrow"},{"name":"transcription termination, DNA-dependent","type":"related"},{"name":"transcriptional complex disassembly","type":"broad"}],"termid":"GO:0006353","terms_by_termid":{"GO:0006363":null,"GO:0006369":null,"GO:0006386":null,"GO:0030847":null,"GO:1904595":null}}


id: GO:0007221
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The activation of transcription of specific genes as a result of Notch signaling, mediated by the Notch intracellular domain.","definition_xrefs":["PMID:12651094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transcription by RNA polymerase II","termid":"GO:0045944"},{"relation_name":"part_of","term_name":"Notch signaling pathway","termid":"GO:0007219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"positively_regulates","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006351","GO:0006355","GO:0023052"],"is_obsolete":false,"name":"positive regulation of transcription of Notch receptor target","secondary_identifiers":["Reactome:R-HSA-9013508"],"synonyms":[{"name":"N receptor target transcription factor activation","type":"related"},{"name":"Notch receptor target transcription factor activation","type":"related"}],"termid":"GO:0007221"}


id: GO:1900605
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of tensidol A.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"},{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"},{"relation_name":"is_a","term_name":"tensidol A metabolic process","termid":"GO:1900603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"tensidol A biosynthetic process","synonyms":[{"name":"tensidol A anabolism","type":"exact"},{"name":"tensidol A biosynthesis","type":"exact"},{"name":"tensidol A formation","type":"exact"},{"name":"tensidol A synthesis","type":"exact"}],"termid":"GO:1900605"}


id: FYPO:0005226
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of ubiquitinated protein measured the cell is lower than normal when the cell is in the vegetative growth phase of the life cycle. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level during vegetative growth","termid":"FYPO:0001324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased level of ubiquitinated protein in cell","synonyms":[{"name":"decreased accumulation of ubiquitinated protein in cell","type":"related"},{"name":"decreased level of ubiquitinated protein in cell during mitotic cell cycle","type":"related"},{"name":"decreased level of ubiquitinated protein in cell during vegetative growth","type":"exact"},{"name":"decreased level of ubiquitylated protein in cell","type":"exact"},{"name":"decreased ubiquitinated protein level during vegetative growth","type":"exact"},{"name":"reduced level of ubiquitinated protein in cell","type":"exact"}],"termid":"FYPO:0005226"}


id: GO:0170044
data:
  {"annotated_genes":["SJAG_00674","SJAG_03293","SJAG_02496","SJAG_04827"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[82067],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019478"},{"annotations":[80645],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036088"},{"annotations":[89201,90189],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009450"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of non-proteinogenic amino acids.","definition_xrefs":["GOC:ew"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid catabolic process","termid":"GO:0046395"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00674":null,"SJAG_02496":null,"SJAG_03293":null,"SJAG_04827":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"non-proteinogenic amino acid catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"non-proteinogenic amino acid breakdown","type":"exact"},{"name":"non-proteinogenic amino acid catabolism","type":"exact"},{"name":"non-proteinogenic amino acid degradation","type":"exact"}],"termid":"GO:0170044","terms_by_termid":{"GO:0009450":null,"GO:0019478":null,"GO:0036088":null}}


id: PBO:0032721
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_transcription_from_MCB_promoter","termid":"PBO:0032721"}


id: MONDO:0021574
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited oocyte maturation defect","termid":"MONDO:0014769"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"oocyte maturation defect 3","secondary_identifiers":["OMIM:617712","UMLS:C4540205","MEDGEN:1617317"],"synonyms":[{"name":"OOMD3","type":"exact"},{"name":"oocyte maturation defect 3","type":"exact"}],"termid":"MONDO:0021574","xrefs":{"Monarch":{"xref_id":"0021574"}}}


id: PBO:0030054
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_rhizoxin","termid":"PBO:0030054"}


id: GO:0030781
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + 6-O-methylnorlaudanosoline = S-adenosyl-L-homocysteine + nororientaline.","definition_xrefs":["EC:2.1.1.121"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016741","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"6-O-methylnorlaudanosoline 5'-O-methyltransferase activity","secondary_identifiers":["MetaCyc:2.1.1.121-RXN","RHEA:11892"],"synonyms":[{"name":"S-adenosyl-L-methionine:6-O-methylnorlaudanosoline 5'-O-methyltransferase activity","type":"related"}],"termid":"GO:0030781"}


id: GO:0032789
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving unsaturated monocarboxylic acids, any organic acid containing one carboxyl (COOH) group or anion (COO-) and one or more unsaturated C-C bonds.","definition_xrefs":["GOC:vk","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"unsaturated monocarboxylic acid metabolic process","synonyms":[{"name":"unsaturated monocarboxylate metabolic process","type":"exact"},{"name":"unsaturated monocarboxylic acid metabolism","type":"exact"}],"termid":"GO:0032789"}


id: GO:0046241
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of m-xylene, 1,3-dimethylbenzene, a colorless, liquid aromatic hydrocarbon.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete m-xylene biosynthetic process (obsolete GO:0046241)","synonyms":[{"name":"m-xylene anabolism","type":"exact"},{"name":"m-xylene biosynthesis","type":"exact"},{"name":"m-xylene biosynthetic process","type":"exact"},{"name":"m-xylene formation","type":"exact"},{"name":"m-xylene synthesis","type":"exact"},{"name":"meta-xylene biosynthesis","type":"exact"},{"name":"meta-xylene biosynthetic process","type":"exact"}],"termid":"GO:0046241"}


id: PBO:0044121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTAGE family member 7, pseudogene","termid":"PBO:0044121"}


id: MONDO:1010833
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Wilson disease that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Wilson disease, non-human animal","termid":"MONDO:1010164"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Wilson disease, domestic cat","secondary_identifiers":["OMIA:001071-9685"],"termid":"MONDO:1010833","xrefs":{"Monarch":{"xref_id":"1010833"}}}


id: MONDO:0001121
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute or chronic inflammatory process affecting the mucous membrane of the frontal sinus.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sinusitis","termid":"MONDO:0005961"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frontal sinusitis","secondary_identifiers":["NCIT:C34626","SCTID:78737005","UMLS:C0016735","MEDGEN:8919","MESH:D015522","DOID:10791"],"termid":"MONDO:0001121","xrefs":{"Monarch":{"xref_id":"0001121"}}}


id: PBO:0039680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amyloid beta precursor protein binding family A member 1","termid":"PBO:0039680"}


id: MONDO:0030714
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"osteogenesis imperfecta","termid":"MONDO:0019019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"osteogenesis imperfecta, IIA 22","secondary_identifiers":["MEDGEN:1801631","UMLS:C5676943","OMIM:619795"],"synonyms":[{"name":"OI22","type":"exact"},{"name":"osteogenesis imperfecta, IIA 22","type":"exact"}],"termid":"MONDO:0030714","xrefs":{"Monarch":{"xref_id":"0030714"}}}


id: GO:0072559
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An inflammasome complex that consists of three components, NLRP3 (NALP3), PYCARD and caspase-1. It is activated upon exposure to whole pathogens, as well as a number of structurally diverse pathogen- and danger-associated molecular patterns (PAMPs and DAMPs) and environmental irritants. Whole pathogens demonstrated to activate the NLRP3 inflammasome complex include the fungi Candida albicans and Saccharomyces cerevisiae, bacteria that produce pore-forming toxins, including Listeria monocytogenes and Staphylococcus aureus, and viruses such as Sendai virus, adenovirus, and influenza virus.","definition_xrefs":["GOC:add","GOC:vp","GOC:BHF","PMID:20303873"],"direct_ancestors":[{"relation_name":"is_a","term_name":"canonical inflammasome complex","termid":"GO:0061702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005829","GO:0005575"],"is_obsolete":false,"name":"NLRP3 inflammasome complex","synonyms":[{"name":"NALP3 inflammasome complex","type":"exact"}],"termid":"GO:0072559"}


id: FYPO:0005306
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to centromeric chromatin is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to centromere during vegetative growth","termid":"FYPO:0000449"},{"relation_name":"is_a","term_name":"abnormal protein localization to chromatin during vegetative growth","termid":"FYPO:0000452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"abnormal protein localization to centromeric chromatin during vegetative growth","synonyms":[{"name":"abnormal protein localisation to centromeric chromatin during vegetative growth","type":"exact"},{"name":"abnormal protein localization to centromeric chromatin during mitotic cell cycle","type":"related"},{"name":"abnormal protein localization to chromatin at centromere","type":"exact"}],"termid":"FYPO:0005306"}


id: PBO:0087420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit (90 kDa) of TFIID and SAGA complexes; involved in RNA polymerase II transcription initiation and in chromatin modification","termid":"PBO:0087420"}


id: GO:0032757
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-8 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-8 production","termid":"GO:0032677"},{"relation_name":"positively_regulates","term_name":"interleukin-8 production","termid":"GO:0032637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of interleukin-8 production","secondary_identifiers":["GO:0045416","GO:2000484"],"synonyms":[{"name":"activation of interleukin-8 production","type":"narrow"},{"name":"positive regulation of IL-8 production","type":"exact"},{"name":"positive regulation of interleukin-8 biosynthetic process","type":"narrow"},{"name":"positive regulation of interleukin-8 secretion","type":"narrow"},{"name":"stimulation of interleukin-8 production","type":"narrow"},{"name":"up regulation of interleukin-8 production","type":"exact"},{"name":"up-regulation of interleukin-8 production","type":"exact"},{"name":"upregulation of interleukin-8 production","type":"exact"}],"termid":"GO:0032757"}


id: GO:0033494
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ferulate, (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"ferulate metabolic process","synonyms":[{"name":"ferulate metabolism","type":"exact"}],"termid":"GO:0033494"}


id: PBO:0060386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myocardial zonula adherens protein","termid":"PBO:0060386"}


id: PBO:0073156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC61 translocon subunit alpha 2","termid":"PBO:0073156"}


id: PBO:0108941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL7L1 pseudogene 20","termid":"PBO:0108941"}


id: GO:1900013
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell in response to the presence of 3',5'-cAMP that results in a change in state or activity (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a potassium ion stimulus.","definition_xrefs":["PMID:21239624","PMID:19363786","GOC:pf","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular response to potassium ion involved in chemotaxis to cAMP (obsolete GO:1900013)","synonyms":[{"name":"cellular response to K+ ion of chemotaxis to 3',5' cAMP","type":"exact"},{"name":"cellular response to K+ ion of chemotaxis to 3',5'-cAMP","type":"exact"},{"name":"cellular response to K+ ion of chemotaxis to adenosine 3',5'-cyclophosphate","type":"exact"},{"name":"cellular response to K+ ion of chemotaxis to cAMP","type":"related"},{"name":"cellular response to K+ ion of chemotaxis to cyclic AMP","type":"exact"},{"name":"cellular response to potassium ion involved in chemotaxis to cAMP","type":"exact"},{"name":"cellular response to potassium ion of chemotaxis to 3',5' cAMP","type":"related"},{"name":"cellular response to potassium ion of chemotaxis to 3',5'-cAMP","type":"related"},{"name":"cellular response to potassium ion of chemotaxis to adenosine 3',5'-cyclophosphate","type":"related"},{"name":"cellular response to potassium ion of chemotaxis to cAMP","type":"related"},{"name":"cellular response to potassium ion of chemotaxis to cyclic AMP","type":"related"},{"name":"cellular response to potassium of chemotaxis to 3',5' cAMP","type":"exact"},{"name":"cellular response to potassium of chemotaxis to 3',5'-cAMP","type":"exact"},{"name":"cellular response to potassium of chemotaxis to adenosine 3',5'-cyclophosphate","type":"exact"},{"name":"cellular response to potassium of chemotaxis to cAMP","type":"related"},{"name":"cellular response to potassium of chemotaxis to cyclic AMP","type":"exact"}],"termid":"GO:1900013"}


id: MONDO:0005684
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of paralytic poliomyelitis affecting neurons of the medulla oblongata of the brain stem. Clinical features include impaired respiration, hypertension, alterations of vasomotor control, and dysphagia. Weakness and atrophy of the limbs and trunk due to spinal cord involvement is usually associated. (From Adams et al., Principles of Neurology, 6th ed, p765)","definition_xrefs":["MESH:D011052"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paralytic poliomyelitis","termid":"MONDO:0000341"},{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"bulbar polio","secondary_identifiers":["UMLS:C0032372","DOID:9786","ICD9:045.0","MEDGEN:45982"],"synonyms":[{"name":"bulbar polio","type":"exact"},{"name":"bulbar poliomyelitis","type":"exact"},{"name":"medullary involvement poliomyelitis","type":"related"},{"name":"polio, bulbar","type":"related"},{"name":"poliomyelitis, medullary involvement","type":"related"}],"termid":"MONDO:0005684","xrefs":{"Monarch":{"xref_id":"0005684"}}}


id: _global:regulates_level_of
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"p regulates levels of c if p regulates some amount (PATO:0000070) of c","direct_ancestors":[{"relation_name":"is_a","term_name":"functionally_related_to","termid":"_global:functionally_related_to"},{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulates_levels_of","secondary_identifiers":["RO:0002332","GOREL:0000036"],"termid":"_global:regulates_level_of"}


id: GO:1901131
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving kanamycin.","definition_xrefs":["UniPathway:UPA00965","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyol metabolic process","termid":"GO:0019751"},{"relation_name":"is_a","term_name":"aminoglycoside antibiotic metabolic process","termid":"GO:0030647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"kanamycin metabolic process","synonyms":[{"name":"kanamycin metabolism","type":"exact"}],"termid":"GO:1901131"}


id: PBO:0075713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRGAP3 antisense RNA 2","termid":"PBO:0075713"}


id: PR:O94314
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC215.10 gene.","definition_xrefs":["UniProtKB:O94314","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized hydrolase C215.10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC215.10","synonyms":[{"name":"Spom972h-SPBC215.10","type":"exact"}],"termid":"PR:O94314"}


id: GO:0006563
data:
  {"annotated_genes":["SJAG_00582","SJAG_02791","SJAG_03914","SJAG_01766","SJAG_04305","SJAG_04449","SJAG_01880","SJAG_02313"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77835,60960,67637],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006535"},{"annotations":[73756,75016],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019264"},{"annotations":[118754,61485,81280],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006564"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.","definition_xrefs":["GOC:jsg","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine family amino acid metabolic process","termid":"GO:0009069"},{"relation_name":"is_a","term_name":"L-amino acid metabolic process","termid":"GO:0170033"},{"relation_name":"is_a","term_name":"proteinogenic amino acid metabolic process","termid":"GO:0170039"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00582":null,"SJAG_01766":null,"SJAG_01880":null,"SJAG_02313":null,"SJAG_02791":null,"SJAG_03914":null,"SJAG_04305":null,"SJAG_04449":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"L-serine metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"L-serine metabolism","type":"exact"}],"termid":"GO:0006563","terms_by_termid":{"GO:0006535":null,"GO:0006564":null,"GO:0019264":null}}


id: PATO:0000115
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000115 absolute temperature sensitivity (obsolete PATO:0000115)","termid":"PATO:0000115"}


id: PBO:0085206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Outer mitochondrial membrane GTPase, subunit of the ERMES complex; potential regulatory subunit of the ERMES complex that links the ER to mitochondria and may promote inter-organellar calcium and phospholipid exchange as well as coordinating mitochondrial DNA replication and growth; cells lacking Gem1p contain collapsed, globular, or grape-like mitochondria; ortholog of metazoan Miro GTPases","termid":"PBO:0085206"}


id: MONDO:0016269
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"High-grade neuroendocrine carcinoma of the corpus uteri is an extremely rare, aggressive, primary uterine neoplasm, originating from neuroendocrine cells scattered within the endometrium, characterized, macroscopically, by a bulky, frequently polypoid, mass with abundant necrosis located in the uterus and, histologically, by rosette-like and cord-like structures consisting of small, rounded cells with oval nuclei and scarce cytoplasm. Patients often present with dysfunctional uterine bleeding, pelvic or abdominal mass and, especially in later stages of the disease, abdominal pain. Symptomatic metastatic spread or symptoms related to a paraneoplastic syndrome, such as retinopathy, or Cushing syndrome due to ectopic ACTH production, may be associated.","definition_xrefs":["Orphanet:213731"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uterine corpus cancer","termid":"MONDO:0006003"},{"relation_name":"is_a","term_name":"malignant endocrine neoplasm","termid":"MONDO:0021069"},{"relation_name":"is_a","term_name":"uterine corpus neuroendocrine neoplasm","termid":"MONDO:0021650"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"high-grade neuroendocrine carcinoma of the corpus uteri","secondary_identifiers":["MEDGEN:1664315","UMLS:C4751234","GARD:20482"],"synonyms":[{"name":"high-grade neuroendocrine carcinoma of the uterine corpus","type":"exact"},{"name":"poorly differentiated neuroendocrine carcinoma of the corpus uteri","type":"exact"},{"name":"poorly differentiated neuroendocrine carcinoma of the endometrium","type":"exact"}],"termid":"MONDO:0016269","xrefs":{"Monarch":{"xref_id":"0016269"}}}


id: PBO:0017714
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by A. thaliana GRF1","termid":"PBO:0017714"}


id: GO:0045299
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The precipitation of specific crystal forms of calcium carbonate with extracellular matrix proteins in the otolith organs of the vertebrate inner ear.","definition_xrefs":["GOC:dsf","PMID:15581873"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biomineral tissue development","termid":"GO:0031214"},{"relation_name":"part_of","term_name":"otolith development","termid":"GO:0048840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"otolith mineralization","termid":"GO:0045299"}


id: PBO:0001380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc ion transporter Zhf1","termid":"PBO:0001380"}


id: MONDO:0012255
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"chromosome inversion disorder","termid":"MONDO:0043678"},{"relation_name":"is_a","term_name":"chromosome 18 disorder","termid":"MONDO:0700125"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 18 pericentric inversion","secondary_identifiers":["MESH:C563734","UMLS:C1836305","OMIM:609334","MEDGEN:322886"],"synonyms":[{"name":"chromosome 18 pericentric inversion","type":"exact"}],"termid":"MONDO:0012255","xrefs":{"Monarch":{"xref_id":"0012255"}}}


id: MONDO:0015498
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"oromandibular-limb anomalies syndrome","secondary_identifiers":["MEDGEN:1842880","UMLS:C5680663","GARD:19996","Orphanet:156215","icd11.foundation:1868700139"],"termid":"MONDO:0015498","xrefs":{"Monarch":{"xref_id":"0015498"}}}


id: MONDO:0007550
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A basal subtype of epidermolysis bullosa simplex (EBS) characterized by the presence of generalized vesicles and small blisters in grouped or arcuate configuration.","definition_xrefs":["Orphanet:79396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermolysis bullosa simplex","termid":"MONDO:0017610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"epidermolysis bullosa simplex 1A, generalized severe","secondary_identifiers":["GARD:2141","MEDGEN:38194","OMIM:131760","DOID:0060735","SCTID:254179000","ICD9:771.2","UMLS:C0079295"],"synonyms":[{"name":"Dowling-Meara type epidermolysis bullosa simplex","type":"related"},{"name":"EBS, generalised severe","type":"exact"},{"name":"EBS, generalized severe","type":"exact"},{"name":"EBS-DM","type":"related"},{"name":"EBS-gen sev","type":"exact"},{"name":"EBSDM","type":"exact"},{"name":"epidermolysis bullosa herpetiformis Dowling-Meara type","type":"exact"},{"name":"epidermolysis bullosa herpetiformis, Dowling-Meara type","type":"related"},{"name":"epidermolysis bullosa simplex 1A, generalized severe","type":"exact"},{"name":"epidermolysis bullosa simplex Dowling-Meara type","type":"exact"},{"name":"epidermolysis bullosa simplex, Dowling-Meara type","type":"related"},{"name":"epidermolysis bullosa simplex, generalised severe","type":"related"},{"name":"epidermolysis bullosa simplex, generalized severe","type":"related"},{"name":"epidermolysis bullosa simplex, herpetiformis","type":"exact"},{"name":"generalised severe epidermolysis bullosa simplex","type":"exact"},{"name":"generalized severe epidermolysis bullosa simplex","type":"exact"}],"termid":"MONDO:0007550","xrefs":{"Monarch":{"xref_id":"0007550"}}}


id: PBO:0088204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zn2-Cys6 zinc-finger transcription factor; activates genes involved in multidrug resistance; paralog of Yrm1p, acting on an overlapping set of target genes; YRR1 has a paralog, PDR8, that arose from the whole genome duplication","termid":"PBO:0088204"}


id: GO:1900951
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of 18-methylnonadec-1-ene biosynthetic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of olefin biosynthetic process","termid":"GO:1900912"},{"relation_name":"is_a","term_name":"regulation of 18-methylnonadec-1-ene biosynthetic process","termid":"GO:1900950"},{"relation_name":"is_a","term_name":"negative regulation of 18-methylnonadec-1-ene metabolic process","termid":"GO:1900954"},{"relation_name":"negatively_regulates","term_name":"18-methylnonadec-1-ene biosynthetic process","termid":"GO:1900881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of 18-methylnonadec-1-ene biosynthetic process","synonyms":[{"name":"down regulation of 18-methylnonadec-1-ene anabolism","type":"exact"},{"name":"down regulation of 18-methylnonadec-1-ene biosynthesis","type":"exact"},{"name":"down regulation of 18-methylnonadec-1-ene biosynthetic process","type":"exact"},{"name":"down regulation of 18-methylnonadec-1-ene formation","type":"exact"},{"name":"down regulation of 18-methylnonadec-1-ene synthesis","type":"exact"},{"name":"down-regulation of 18-methylnonadec-1-ene anabolism","type":"exact"},{"name":"down-regulation of 18-methylnonadec-1-ene biosynthesis","type":"exact"},{"name":"down-regulation of 18-methylnonadec-1-ene biosynthetic process","type":"exact"},{"name":"down-regulation of 18-methylnonadec-1-ene formation","type":"exact"},{"name":"down-regulation of 18-methylnonadec-1-ene synthesis","type":"exact"},{"name":"downregulation of 18-methylnonadec-1-ene anabolism","type":"exact"},{"name":"downregulation of 18-methylnonadec-1-ene biosynthesis","type":"exact"},{"name":"downregulation of 18-methylnonadec-1-ene biosynthetic process","type":"exact"},{"name":"downregulation of 18-methylnonadec-1-ene formation","type":"exact"},{"name":"downregulation of 18-methylnonadec-1-ene synthesis","type":"exact"},{"name":"inhibition of 18-methylnonadec-1-ene anabolism","type":"exact"},{"name":"inhibition of 18-methylnonadec-1-ene biosynthesis","type":"exact"},{"name":"inhibition of 18-methylnonadec-1-ene biosynthetic process","type":"narrow"},{"name":"inhibition of 18-methylnonadec-1-ene formation","type":"exact"},{"name":"inhibition of 18-methylnonadec-1-ene synthesis","type":"exact"},{"name":"negative regulation of 18-methylnonadec-1-ene anabolism","type":"exact"},{"name":"negative regulation of 18-methylnonadec-1-ene biosynthesis","type":"exact"},{"name":"negative regulation of 18-methylnonadec-1-ene formation","type":"exact"},{"name":"negative regulation of 18-methylnonadec-1-ene synthesis","type":"exact"}],"termid":"GO:1900951"}


id: PBO:0064596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POU class 2 homeobox associating factor 2","termid":"PBO:0064596"}


id: GO:0030877
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cytoplasmic protein complex containing glycogen synthase kinase-3-beta (GSK-3-beta), the adenomatous polyposis coli protein (APC), and the scaffolding protein axin, among others; phosphorylates beta-catenin, targets it for degradation by the proteasome.","definition_xrefs":["PMID:14600025"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"beta-catenin destruction complex","secondary_identifiers":["GO:0034747","GO:0034742"],"synonyms":[{"name":"23S APC complex","type":"narrow"},{"name":"APC-Axin-1-beta-catenin complex","type":"exact"},{"name":"Axin-APC-beta-catenin-GSK3B complex","type":"exact"},{"name":"BDC","type":"exact"},{"name":"beta-catenin degradation complex","type":"exact"}],"termid":"GO:0030877"}


id: GO:0032806
data:
  {"annotated_genes":["SJAG_00512","SJAG_01207","SJAG_02057","SJAG_03618","SJAG_04368","SJAG_00995","SJAG_00901","SJAG_03967","SJAG_04420","SJAG_00150","SJAG_01149","SJAG_04614","SJAG_03061","SJAG_03206","SJAG_01213","SJAG_00758"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[81173,112739,97580],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070692"},{"annotations":[110851,110694],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070691"},{"annotations":[77848,80413,110799,72044,76069,116666,93943,71818],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005675"},{"annotations":[77904,67297,61393],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070985"}]},"cv_name":"cellular_component","definition":"A protein complex that phosphorylates amino acid residues of RNA polymerase II C-terminal domain repeats; phosphorylation occurs mainly on Ser2 and Ser5.","definition_xrefs":["PMID:16721054","PMID:15047695","PMID:17079683"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"is_a","term_name":"serine/threonine protein kinase complex","termid":"GO:1902554"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00150":null,"SJAG_00512":null,"SJAG_00758":null,"SJAG_00901":null,"SJAG_00995":null,"SJAG_01149":null,"SJAG_01207":null,"SJAG_01213":null,"SJAG_02057":null,"SJAG_03061":null,"SJAG_03206":null,"SJAG_03618":null,"SJAG_03967":null,"SJAG_04368":null,"SJAG_04420":null,"SJAG_04614":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"carboxy-terminal domain protein kinase complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"CTDK complex","type":"exact"}],"termid":"GO:0032806","terms_by_termid":{"GO:0005675":null,"GO:0070691":null,"GO:0070692":null,"GO:0070985":null}}


id: GO:0009425
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"One of the three major substructures of the bacterial-type flagellum, the basal body is embedded in the cell envelope (the plasma membrane, peptidoglycan cell wall, and, if one is present, the outer membrane); it houses the secretion apparatus that exports the more distal components and the flagellar motor.","definition_xrefs":["GOC:mtg_sensu","PMID:12624192","PMID:24697492","PMID:10572114","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"bacterial-type flagellum","termid":"GO:0009288"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"bacterial-type flagellum basal body","synonyms":[{"name":"flagellar basal body","type":"broad"},{"name":"flagellin-based flagellum basal body","type":"exact"}],"termid":"GO:0009425"}


id: GO:0033558
data:
  {"annotated_genes":["SJAG_03844","SJAG_03627","SJAG_04186","SJAG_01075","SJAG_00581","SJAG_04039"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[64719,111295],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031078"},{"annotations":[79034,91825],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032041"},{"annotations":[105992],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0141222"},{"annotations":[91826],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140765"},{"annotations":[111296],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032129"},{"annotations":[79035,116265],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046969"},{"annotations":[111297],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140937"},{"annotations":[98996,111298],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034739"},{"annotations":[79036],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046970"},{"annotations":[111299],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180032"},{"annotations":[111300],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180033"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: Removal of an acetyl group from a lysine residue in a protein.","definition_xrefs":["PMID:27296530","RHEA:58108"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deacetylase activity","termid":"GO:0019213"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00581":null,"SJAG_01075":null,"SJAG_03627":null,"SJAG_03844":null,"SJAG_04039":null,"SJAG_04186":null},"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0019213"}],"interesting_parent_ids":["GO:0003674","GO:0140096","GO:0003824","GO:0019213"],"is_obsolete":false,"name":"protein lysine deacetylase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9701565","Reactome:R-HSA-9841847","Reactome:R-HSA-9825772","Reactome:R-HSA-5693092","Reactome:R-HSA-9626962","Reactome:R-HSA-8952069"],"synonyms":[{"name":"protein deacetylase activity","type":"exact"}],"termid":"GO:0033558","terms_by_termid":{"GO:0031078":null,"GO:0032041":null,"GO:0032129":null,"GO:0034739":null,"GO:0046969":null,"GO:0046970":null,"GO:0140765":null,"GO:0140937":null,"GO:0141222":null,"GO:0180032":null,"GO:0180033":null}}


id: GO:0005093
data:
  {"annotated_genes":["SJAG_02422"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77813],"is_not":false,"summary":null,"term":"GO:0005093"}]},"cv_name":"molecular_function","definition":"Prevents the dissociation of GDP from the small GTPase Rab, thereby preventing GTP from binding.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GDP-dissociation inhibitor activity","termid":"GO:0005092"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02422":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"}],"interesting_parent_ids":["GO:0098772","GO:0030234","GO:0003674"],"is_obsolete":false,"name":"Rab GDP-dissociation inhibitor activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0005093","terms_by_termid":{"GO:0005093":null}}


id: PBO:0066265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBMX pseudogene 5","termid":"PBO:0066265"}


id: GO:0141101
data:
  {"annotated_genes":["SJAG_03367"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[64491],"is_not":false,"summary":null,"term":"GO:0141101"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: Catalysis of the reaction: S-adenosyl-L-methionine + uridine44 in tRNASer = 2'-O-methyluridine44 in tRNASer + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["PMID:18025252","RHEA:43100"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA (uridine) methyltransferase activity","termid":"GO:0016300"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03367":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0140098","GO:0016741","GO:0016740","GO:0140101"],"is_obsolete":false,"name":"tRNA(Ser) (uridine(44)-2'-O-)-methyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["Reactome:R-HSA-6788707","MetaCyc:RXN-12368","EC:2.1.1.211"],"synonyms":[{"name":"tRNA(Ser) (uracil(44)-2'-O-)-methyltransferase activity","type":"exact"}],"termid":"GO:0141101","terms_by_termid":{"GO:0141101":null}}


id: GO:0110142
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of enzymes and accessory factors of the ubiquinone (CoQ) biosynthesis pathway. In E. coli, the complex is composed of seven proteins: UbiE, F, G, H, I, J and K. In eukaryotes, the complex is located on the matrix face of the inner mitochondrial membrane and includes COQ3, COQ4, COQ5, COQ6, COQ7, COQ9.","definition_xrefs":["PMID:28927698","GOC:imk","PMID:30686758","PMID:27060254"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"ubiquinone biosynthesis complex","synonyms":[{"name":"CoQ Biosynthetic Complex","type":"exact"},{"name":"CoQ metabolon","type":"exact"},{"name":"CoQ-synthome","type":"exact"},{"name":"Ubi complex","type":"exact"},{"name":"complex Q","type":"exact"}],"termid":"GO:0110142"}


id: PATO:0000298
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000298 not arrested value (obsolete PATO:0000298)","termid":"PATO:0000298"}


id: PR:A6X969
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC806.11 gene.","definition_xrefs":["PRO:DNx","UniProtKB:A6X969"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C806.11 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC806.11","synonyms":[{"name":"Spom972h-SPAC806.11","type":"exact"}],"termid":"PR:A6X969"}


id: PBO:0060605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear cap binding protein subunit 1","termid":"PBO:0060605"}


id: MONDO:0045008
data:
  {"annotated_genes":["SJAG_03509","SJAG_00717","SJAG_03024"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88362,88361],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011816"},{"annotations":[88986],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010035"}]},"cv_name":"mondo","definition":"A disease that has its basis in the disruption of cholesterol metabolic process.","definition_xrefs":["MONDO:design_pattern"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sterol metabolism disorder","termid":"MONDO:0019256"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00717":null,"SJAG_03024":null,"SJAG_03509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"cholesterol metabolism disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:123963007","UMLS:C0342877","MEDGEN:575263"],"synonyms":[{"name":"cholesterol metabolic process disease","type":"exact"},{"name":"cholesterol metabolism disease","type":"exact"},{"name":"disorder of cholesterol metabolic process","type":"exact"},{"name":"disorder of cholesterol metabolism","type":"exact"}],"termid":"MONDO:0045008","terms_by_termid":{"MONDO:0010035":null,"MONDO:0011816":null},"xrefs":{"Monarch":{"xref_id":"0045008"}}}


id: MONDO:0012395
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cataract in which the cause of the disease is a mutation in the FYCO1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"early-onset non-syndromic cataract","termid":"MONDO:0011060"},{"relation_name":"excluded_subClassOf","term_name":"early-onset nuclear cataract","termid":"MONDO:0020376"},{"relation_name":"excluded_subClassOf","term_name":"early-onset partial cataract","termid":"MONDO:0020377"},{"relation_name":"excluded_subClassOf","term_name":"early-onset zonular cataract","termid":"MONDO:0020379"},{"relation_name":"is_a","term_name":"cataract","termid":"MONDO:0005129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cataract 18","secondary_identifiers":["OMIM:610019","UMLS:C1864908","MEDGEN:351249","DOID:0110238","GARD:9892","MESH:C535337"],"synonyms":[{"name":"CATC2","type":"exact"},{"name":"CTRCT18","type":"exact"},{"name":"FYCO1 cataract (disease)","type":"exact"},{"name":"autosomal recessive congenital cataract 2","type":"exact"},{"name":"cataract (disease) caused by mutation in FYCO1","type":"exact"},{"name":"cataract 18","type":"exact"},{"name":"cataract 18 autosomal recessive","type":"exact"},{"name":"cataract 18, autosomal recessive","type":"exact"},{"name":"cataract type 18","type":"exact"},{"name":"cataract, autosomal recessive congenital 2","type":"related"}],"termid":"MONDO:0012395","xrefs":{"Monarch":{"xref_id":"0012395"}}}


id: PBO:0110066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPR repeat protein, implicated in rRNA processing from interactions, human TTC27 ortholog","termid":"PBO:0110066"}


id: MONDO:0019906
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ring chromosome 11 syndrome is an autosomal anomaly characterized by variable clinical features, including early growth retardation and short stature, microcephaly, developmental delay, some degree of intellectual disability, facial dysmorphism and café-au-lait spots. In some cases, congenital heart disease and endocrine abnormalities have been reported.","definition_xrefs":["Orphanet:96175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 11 disorder","termid":"MONDO:0700018"},{"relation_name":"is_a","term_name":"ring chromosome disorder","termid":"MONDO:0700091"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring chromosome 11","secondary_identifiers":["UMLS:C0265444","SCTID:111310003","ICD9:758.89","GARD:10846","MEDGEN:539256"],"synonyms":[{"name":"RC11","type":"exact"},{"name":"Ring 11","type":"related"},{"name":"Ring chromosome 11 syndrome","type":"related"},{"name":"Ring chromosome type 11","type":"exact"},{"name":"chromosome 11 ring","type":"related"},{"name":"r(11) syndrome","type":"exact"},{"name":"r11","type":"related"}],"termid":"MONDO:0019906","xrefs":{"Monarch":{"xref_id":"0019906"}}}


id: GO:0106248
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of poly(A)-specific ribonuclease activity.","definition_xrefs":["PMID:29932902","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of poly(A)-specific ribonuclease activity (obsolete GO:0106248)","termid":"GO:0106248"}


id: SO:0000275
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Small nucleolar RNAs (snoRNAs) are short non-coding RNAs enriched in the nucleolus as components of small nucleolar ribonucleoproteins. They guide ribose methylation and pseudouridylation of rRNAs and snRNAs, and a subgroup regulate excision of rRNAs from rRNA precursor transcripts. snoRNAs may also guide rRNA acetylation and tRNA methylation, and regulate mRNA abundance and alternative splicing.","definition_xrefs":["GOC:kgc","PMID:31828325"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"snoRNA_primary_transcript","termid":"SO:0000232"},{"relation_name":"is_a","term_name":"sncRNA","termid":"SO:0002247"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snoRNA","synonyms":[{"name":"INSDC_feature:ncRNA","type":"broad"},{"name":"INSDC_qualifier:snoRNA","type":"exact"},{"name":"small nucleolar RNA","type":"exact"}],"termid":"SO:0000275"}


id: PBO:0052045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KN motif and ankyrin repeat domains 1 pseudogene 1","termid":"PBO:0052045"}


id: PBO:0077052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THRB intronic transcript 1","termid":"PBO:0077052"}


id: GO:0072355
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the addition of an phosphate group to a threonine residue at position 3 of the histone.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-T3 phosphorylation (obsolete GO:0072355)","termid":"GO:0072355"}


id: PBO:0086431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative integral membrane protein; member of DUP240 gene family; GFP-fusion protein is induced in response to the DNA-damaging agent MMS","termid":"PBO:0086431"}


id: PBO:0079348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tweety family member 1","termid":"PBO:0079348"}


id: GO:0045874
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the sevenless signaling pathway.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of sevenless signaling pathway","termid":"GO:0045501"},{"relation_name":"positively_regulates","term_name":"sevenless signaling pathway","termid":"GO:0045500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of sevenless signaling pathway","synonyms":[{"name":"activation of sevenless signaling pathway","type":"narrow"},{"name":"positive regulation of sev signaling pathway","type":"exact"},{"name":"positive regulation of sevenless signalling pathway","type":"exact"},{"name":"stimulation of sevenless signaling pathway","type":"narrow"},{"name":"up regulation of sevenless signaling pathway","type":"exact"},{"name":"up-regulation of sevenless signaling pathway","type":"exact"},{"name":"upregulation of sevenless signaling pathway","type":"exact"}],"termid":"GO:0045874"}


id: SO:0000171
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A DNA sequence in eukaryotic DNA to which RNA polymerase III binds, to begin transcription.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eukaryotic_promoter","termid":"SO:0002221"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNApol_III_promoter","synonyms":[{"name":"RNA polymerase C promoter","type":"exact"},{"name":"RNApol III promoter","type":"exact"},{"name":"pol III promoter","type":"exact"},{"name":"polymerase III promoter","type":"exact"}],"termid":"SO:0000171"}


id: FYPO:0001707
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the incidence of mitotic cell cycle arrest or delay due to regulation by any mitotic DNA damage checkpoint is greater than in wild type under any specified set of conditions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic DNA damage checkpoint","termid":"FYPO:0000006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000298"],"is_obsolete":false,"name":"increased mitotic DNA damage checkpoint activation","synonyms":[{"name":"increased mitotic DNA damage checkpoint activation under non-stressed conditions","type":"narrow"}],"termid":"FYPO:0001707"}


id: FYPO:0003889
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the fungal-type cell wall is thinner than normal at the old end of the cell.","definition_xrefs":["PMID:10547441","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cell wall thickness at cell tip during vegetative growth","termid":"FYPO:0006746"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002946"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0002946","FYPO:0001985"],"is_obsolete":false,"name":"decreased cell wall thickness at old end during vegetative growth","synonyms":[{"name":"decreased cell wall thickness at growing end during vegetative growth","type":"related"},{"name":"decreased cell wall thickness at old end during mitotic cell cycle","type":"related"},{"name":"reduced cell wall thickness at old end during vegetative growth","type":"exact"},{"name":"thin cell wall at old end during vegetative growth","type":"exact"}],"termid":"FYPO:0003889"}


id: PBO:0081832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 766","termid":"PBO:0081832"}


id: MONDO:0013991
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital leptin deficiency is a form of monogenic obesity characterized by severe early-onset obesity and marked hyperphagia.","definition_xrefs":["Orphanet:66628"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital hypogonadotropic hypogonadism","termid":"MONDO:0015770"},{"relation_name":"is_a","term_name":"inherited obesity","termid":"MONDO:0019182"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"obesity due to congenital leptin deficiency","secondary_identifiers":["MEDGEN:767138","DOID:0111334","NORD:110641","OMIM:614962","UMLS:C3554224","icd11.foundation:591009309","GARD:13015"],"synonyms":[{"name":"Congenital Leptin Deficiency","type":"exact"},{"name":"LEPD","type":"related"},{"name":"leptin deficiency or dysfunction","type":"related"},{"name":"obesity, morbid, due to leptin deficiency","type":"exact"},{"name":"obesity, morbid, nonsyndromic 1","type":"related"}],"termid":"MONDO:0013991","xrefs":{"Monarch":{"xref_id":"0013991"}}}


id: MONDO:1010813
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polydactyly that occurs in horse.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polydactyly, non-human animal","termid":"MONDO:1010158"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polydactyly, horse","secondary_identifiers":["OMIA:000810-9796"],"termid":"MONDO:1010813","xrefs":{"Monarch":{"xref_id":"1010813"}}}


id: MONDO:0012321
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An Alzheimer's disease that is characterized by an associated with variation in the region 7q36.","definition_xrefs":["DOID:0110043","PMID:16175510"],"direct_ancestors":[{"relation_name":"is_a","term_name":"early-onset autosomal dominant Alzheimer disease","termid":"MONDO:0015140"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0000426","MONDO:0002039"],"is_obsolete":false,"name":"Alzheimer disease 10","secondary_identifiers":["MESH:C566465","GARD:16514","MEDGEN:351228","OMIM:609636","UMLS:C1864828"],"synonyms":[{"name":"AD10","type":"exact"},{"name":"Ad10","type":"related"},{"name":"Alzheimer disease 10","type":"exact"},{"name":"Alzheimer disease familial 10","type":"exact"},{"name":"Alzheimer disease type 10","type":"exact"},{"name":"Alzheimer disease, familial, 10","type":"related"},{"name":"Alzheimer disease-10","type":"exact"},{"name":"Alzheimer's disease 10","type":"exact"},{"name":"Alzheimer's disease type 10","type":"exact"}],"termid":"MONDO:0012321","xrefs":{"Monarch":{"xref_id":"0012321"}}}


id: GO:0008366
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which the axon of a neuron is insulated, and that insulation maintained, thereby preventing dispersion of the electrical signal.","definition_xrefs":["GOC:jl","ISBN:0878932437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ensheathment of neurons","termid":"GO:0007272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"axon ensheathment","secondary_identifiers":["GO:0042553"],"synonyms":[{"name":"cellular axon ensheathment","type":"exact"},{"name":"cellular nerve ensheathment","type":"related"},{"name":"nerve ensheathment","type":"related"}],"termid":"GO:0008366"}


id: PATO:0001038
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001038 ratio (obsolete PATO:0001038)","termid":"PATO:0001038"}


id: GO:0032111
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that initiates the activity of an inactive protein histidine kinase.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of protein histidine kinase activity (obsolete GO:0032111)","synonyms":[{"name":"protein histidine kinase activator","type":"related"}],"termid":"GO:0032111"}


id: MONDO:0009843
data:
  {"annotated_genes":["SJAG_02263"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88331],"is_not":false,"summary":null,"term":"MONDO:0009843"}]},"cv_name":"mondo","definition":"Any leukodystrophy in which the cause of the disease is a mutation in the AIMP1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Pelizaeus-Merzbacher-like disease","termid":"MONDO:0017226"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02263":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"hypomyelinating leukodystrophy 3","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:280293","GARD:4266","MEDGEN:342403","OMIM:260600","MESH:C536319","DOID:0060790","UMLS:C1850053"],"synonyms":[{"name":"AIMP1 leukodystrophy","type":"exact"},{"name":"HLD3","type":"exact"},{"name":"Pelizaeus-Merzbacher-like disease due to AIMP1 mutation","type":"exact"},{"name":"hypomyelinating leukodystrophy 3","type":"exact"},{"name":"hypomyelinating leukodystrophy type 3","type":"exact"},{"name":"leukodystrophy caused by mutation in AIMP1","type":"exact"},{"name":"leukodystrophy, hypomyelinating 3","type":"related"},{"name":"leukodystrophy, hypomyelinating, 3","type":"related"},{"name":"leukodystrophy, hypomyelinating, type 3","type":"exact"},{"name":"perinatal Sudanophilic leukodystrophy","type":"related"}],"termid":"MONDO:0009843","terms_by_termid":{"MONDO:0009843":null},"xrefs":{"Monarch":{"xref_id":"0009843"}}}


id: GO:0014000
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the morula over time. The morula is a spherical embryonic mass of blastomeres formed before the blastula and resulting from cleavage of the fertilized ovum.","definition_xrefs":["PMID:39361745","PMID:37935903","PMID:38386558"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryo development","termid":"GO:0009790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"morula development","termid":"GO:0014000"}


id: MONDO:0003300
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A well-circumscribed benign smooth muscle neoplasm arising from the appendix. It is characterized by the presence of spindle cells with cigar-shaped nuclei, interlacing fascicles, and a whorled pattern.","definition_xrefs":["NCIT:C5514"],"direct_ancestors":[{"relation_name":"is_a","term_name":"colon leiomyoma","termid":"MONDO:0001092"},{"relation_name":"is_a","term_name":"benign neoplasm of appendix","termid":"MONDO:0021465"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"appendix leiomyoma","secondary_identifiers":["DOID:5146","UMLS:C1332327","MEDGEN:231077"],"synonyms":[{"name":"appendiceal leiomyoma","type":"exact"},{"name":"appendix leiomyoma","type":"exact"},{"name":"leiomyoma of appendix","type":"exact"},{"name":"leiomyoma of the appendix","type":"exact"},{"name":"leiomyoma of vermiform appendix","type":"exact"},{"name":"vermiform appendix leiomyoma","type":"exact"}],"termid":"MONDO:0003300","xrefs":{"Monarch":{"xref_id":"0003300"}}}


id: PBO:0070423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribulose-5-phosphate-3-epimerase pseudogene 1","termid":"PBO:0070423"}


id: MONDO:0003827
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A broad classification for humoral immunodeficiencies. These disorders may be caused by inadequate activation of progenitor B cells, defective class-switching or the effects of medications. Despite the potential for increased susceptibility to infection, these disorders are self-limited with eventual normalization of serum antibody levels.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic agammaglobulinemia","termid":"MONDO:0016463"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"transient hypogammaglobulinemia","secondary_identifiers":["NCIT:C27319","DOID:625","UMLS:C0859960","MEDGEN:167815"],"termid":"MONDO:0003827","xrefs":{"Monarch":{"xref_id":"0003827"}}}


id: GO:0030302
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a deoxynucleotide, a deoxyribonucleoside in ester linkage to phosphate, commonly at the 5' position of deoxyribose, into, out of or within a cell.","definition_xrefs":["ISBN:0198506732","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide transport","termid":"GO:0006862"},{"relation_name":"is_a","term_name":"carbohydrate derivative transport","termid":"GO:1901264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"deoxynucleotide transport","termid":"GO:0030302"}


id: PBO:0079376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin alpha pseudogene 11","termid":"PBO:0079376"}


id: MONDO:0010938
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Severe combined immunodeficiency (SCID) T-B+ due to JAK3 deficiency is a form of SCID characterized by severe and recurrent infections, associated with diarrhea and failure to thrive.","definition_xrefs":["Orphanet:35078"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial severe combined immunodeficiency","termid":"MONDO:0031520"},{"relation_name":"is_a","term_name":"T-B+ severe combined immunodeficiency","termid":"MONDO:0044200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"T-B+ severe combined immunodeficiency due to JAK3 deficiency","secondary_identifiers":["GARD:16632","SCTID:718107000","OMIM:600802","UMLS:C1833275","MESH:C563440","MEDGEN:331474"],"synonyms":[{"name":"SCID, T cell-negative, B cell-positive, NK cell-negative","type":"related"},{"name":"SCID, autosomal recessive, T-negative/B-positive type","type":"exact"},{"name":"T-B+ SCID due to JAK3 deficiency","type":"exact"},{"name":"T-B+ severe combined immunodeficiency due to JAK3 deficiency","type":"exact"},{"name":"T-cell negative B-cell positive severe combined immunodeficiency due to JAK3 deficiency","type":"exact"},{"name":"severe combined immunodeficiency T-cell negative B-cell positive due to janus kinase-3 deficiency","type":"related"},{"name":"severe combined immunodeficiency, autosomal recessive, T cell-NEGATIVE, B cell-POSITIVE, NK cell-NEGATIVE","type":"related"}],"termid":"MONDO:0010938","xrefs":{"Monarch":{"xref_id":"0010938"}}}


id: PBO:0078581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 54","termid":"PBO:0078581"}


id: GO:0140738
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An inflammasome complex that consists of NLRP6, PYCARD/ASC and caspase-1 or caspase-4/caspase-11.","definition_xrefs":["PMID:30674671","PMID:34678144"],"direct_ancestors":[{"relation_name":"is_a","term_name":"canonical inflammasome complex","termid":"GO:0061702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005829","GO:0005575"],"is_obsolete":false,"name":"NLRP6 inflammasome complex","termid":"GO:0140738"}


id: MONDO:0004727
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cancer that involves the oral opening.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oral cavity cancer","termid":"MONDO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"vestibule of mouth cancer","secondary_identifiers":["ICD10CM:C06.1","ICD9:145.1","DOID:9188","MEDGEN:509267","SCTID:187658004","UMLS:C0153374"],"synonyms":[{"name":"cancer of oral opening","type":"exact"},{"name":"malignant neoplasm of oral opening","type":"exact"},{"name":"malignant neoplasm of vestibule of mouth","type":"exact"},{"name":"malignant oral opening neoplasm","type":"exact"},{"name":"malignant tumor of vestibule of mouth","type":"exact"},{"name":"malignant tumour of vestibule of mouth","type":"exact"},{"name":"oral opening cancer","type":"exact"}],"termid":"MONDO:0004727","xrefs":{"Monarch":{"xref_id":"0004727"}}}


id: GO:2001003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of pectin catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of polysaccharide metabolic process","termid":"GO:0032881"},{"relation_name":"is_a","term_name":"regulation of carbohydrate catabolic process","termid":"GO:0043470"},{"relation_name":"regulates","term_name":"pectin catabolic process","termid":"GO:0045490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"regulation of pectin catabolic process","synonyms":[{"name":"regulation of pectin breakdown","type":"exact"},{"name":"regulation of pectin catabolism","type":"exact"},{"name":"regulation of pectin degradation","type":"exact"}],"termid":"GO:2001003"}


id: GO:0051991
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + UDP-N-acetyl-alpha-D-glucosamine = di-trans-octa-cis-undecaprenyl diphospho-[N-acetyl-alpha-D-glucosaminyl-(1->4)]-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + H+ + UDP.","definition_xrefs":["RHEA:31227"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0016757","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity","secondary_identifiers":["MetaCyc:NACGLCTRANS-RXN"],"termid":"GO:0051991"}


id: MOD:00676
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively adds oxygen atoms to a residue with or without the removal of hydrogen atoms.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidized residue","termid":"MOD:00675"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxygenated residue","synonyms":[{"name":"OxyRes","type":"exact"}],"termid":"MOD:00676"}


id: PBO:0048410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gastrin","termid":"PBO:0048410"}


id: PBO:0087403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Structural component of 3 complexes; subunit of the Nup84p nuclear pore subcomplex that contributes to nucleocytoplasmic transport and NPC biogenesis; subunit of the COPII vesicle coat required for ER-to-Golgi transport; subunit of SEACAT, a subcomplex of the coatomer-related, vacuolar-associated SEA complex, that inhibits the TORC1 inhibitory role of SEACIT (Iml1p-Npr2p-Npr3p), a GAP for Gtr1p, thereby resulting in activation of TORC1 signaling; human SEC13 homolog","termid":"PBO:0087403"}


id: GO:1903024
data:
  {"annotated_genes":["SJAG_02169"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92497],"is_not":false,"summary":null,"term":"GO:1903024"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of formation of an ascospore-type prospore membrane.","definition_xrefs":["PMID:11405625","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component biogenesis","termid":"GO:0044089"},{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"is_a","term_name":"positive regulation of ascospore formation","termid":"GO:0075296"},{"relation_name":"is_a","term_name":"regulation of ascospore-type prospore membrane formation","termid":"GO:1903023"},{"relation_name":"positively_regulates","term_name":"ascospore-type prospore membrane formation","termid":"GO:0032120"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02169":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0030437"},{"rel_name":"regulates","termid":"GO:0030437"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0030437","GO:0044085","GO:0061024"],"is_obsolete":false,"name":"positive regulation of ascospore-type prospore membrane formation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of FSM assembly","type":"narrow"},{"name":"activation of FSM biosynthesis","type":"narrow"},{"name":"activation of FSM formation","type":"narrow"},{"name":"activation of ascospore-type prospore membrane assembly","type":"narrow"},{"name":"activation of forespore membrane biosynthesis","type":"narrow"},{"name":"activation of forespore membrane formation","type":"narrow"},{"name":"positive regulation of FSM assembly","type":"exact"},{"name":"positive regulation of FSM biosynthesis","type":"exact"},{"name":"positive regulation of FSM formation","type":"exact"},{"name":"positive regulation of ascospore-type prospore membrane assembly","type":"related"},{"name":"positive regulation of forespore membrane biosynthesis","type":"exact"},{"name":"positive regulation of forespore membrane formation","type":"exact"},{"name":"up regulation of FSM assembly","type":"exact"},{"name":"up regulation of FSM biosynthesis","type":"exact"},{"name":"up regulation of FSM formation","type":"exact"},{"name":"up regulation of ascospore-type prospore membrane assembly","type":"exact"},{"name":"up regulation of forespore membrane biosynthesis","type":"exact"},{"name":"up regulation of forespore membrane formation","type":"exact"},{"name":"up-regulation of FSM assembly","type":"exact"},{"name":"up-regulation of FSM biosynthesis","type":"exact"},{"name":"up-regulation of FSM formation","type":"exact"},{"name":"up-regulation of ascospore-type prospore membrane assembly","type":"exact"},{"name":"up-regulation of forespore membrane biosynthesis","type":"exact"},{"name":"up-regulation of forespore membrane formation","type":"exact"},{"name":"upregulation of FSM assembly","type":"exact"},{"name":"upregulation of FSM biosynthesis","type":"exact"},{"name":"upregulation of FSM formation","type":"exact"},{"name":"upregulation of ascospore-type prospore membrane assembly","type":"exact"},{"name":"upregulation of forespore membrane biosynthesis","type":"exact"},{"name":"upregulation of forespore membrane formation","type":"exact"}],"termid":"GO:1903024","terms_by_termid":{"GO:1903024":null}}


id: GO:0106135
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of cardiac muscle cell contraction.","definition_xrefs":["PMID:19525381"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"negative regulation of cardiac muscle contraction","termid":"GO:0055118"},{"relation_name":"is_a","term_name":"regulation of cardiac muscle cell contraction","termid":"GO:0086004"},{"relation_name":"negatively_regulates","term_name":"cardiac muscle cell contraction","termid":"GO:0086003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cardiac muscle cell contraction","termid":"GO:0106135"}


id: GO:0090656
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A telomere maintenance process that results in the formation of a telomeric circle, or t-circle. A t-circle is an extrachromosomal duplex or single-stranded circular DNA molecule composed of t-arrays. T-circles are involved in the control of telomere length via alternative-lengthening of telomeres (ALT) pathway and telomere rapid deletion (TRD).","definition_xrefs":["GOC:nc","PMID:19214183","GOC:BHF","PMID:19809492","GOC:BHF_telomere","PMID:19581589","PMID:19858100"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formation of extrachromosomal circular DNA","termid":"GO:0001325"},{"relation_name":"part_of","term_name":"telomere maintenance via telomere trimming","termid":"GO:0090737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0032200"}],"interesting_parent_ids":["GO:0032200","GO:0006259","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"t-circle formation","synonyms":[{"name":"telomeric circle formation","type":"exact"}],"termid":"GO:0090656"}


id: PBO:0076104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntaxin 8 pseudogene 1","termid":"PBO:0076104"}


id: PBO:0084285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral membrane protein required for V-ATPase function; not an actual component of the vacuolar H+-ATPase (V-ATPase) complex; diverged ortholog of human XMEA (X-linked Myopathy with Excessive Autophagy); functions in the assembly of the V-ATPase; localized to the yeast endoplasmic reticulum (ER)","termid":"PBO:0084285"}


id: PR:Q09783
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tim8 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09783"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial import inner membrane translocase subunit tim8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13G6.04","synonyms":[{"name":"Spom972h-tim8","type":"exact"}],"termid":"PR:Q09783"}


id: PBO:0039741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apolipoprotein L3","termid":"PBO:0039741"}


id: MONDO:1011519
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hemophilia A that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemophilia A, non-human animal","termid":"MONDO:1011408"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemophilia A, cattle","secondary_identifiers":["OMIA:000437-9913"],"termid":"MONDO:1011519","xrefs":{"Monarch":{"xref_id":"1011519"}}}


id: PBO:0112613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial CH-OH group oxidoreductase, human RTN4IP1 ortholog, implicated in isoprenoid or sterol metabolism","termid":"PBO:0112613"}


id: MONDO:1012446
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"non-specific digestive disorder, non-human animal","termid":"MONDO:1011666"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-specific digestive disorder, rabbit","secondary_identifiers":["OMIA:001768-9986"],"termid":"MONDO:1012446","xrefs":{"Monarch":{"xref_id":"1012446"}}}


id: PBO:0057684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1273c","termid":"PBO:0057684"}


id: PBO:0080287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 51 pseudogene","termid":"PBO:0080287"}


id: PBO:0063182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PBX homeobox 3","termid":"PBO:0063182"}


id: PBO:0114530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TREX2 complex subunit-like, poorly characterized, implicated in transcription or RNA surveillance","termid":"PBO:0114530"}


id: GO:0001889
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the liver over time, from its formation to the mature structure. The liver is an exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes.","definition_xrefs":["GOC:add","ISBN:068340007X"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gland development","termid":"GO:0048732"},{"relation_name":"part_of","term_name":"hepaticobiliary system development","termid":"GO:0061008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"liver development","termid":"GO:0001889"}


id: MONDO:0001999
data:
  {"annotated_genes":["SJAG_04757","SJAG_03866"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88382,88381],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009935"}]},"cv_name":"mondo","definition":"Increased blood pressure in the arteries of the lungs; the etiology is unknown.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chronic pulmonary heart disease","termid":"MONDO:0001493"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03866":null,"SJAG_04757":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"primary pulmonary hypertension","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:14557","MEDGEN:57749","ICD9:416.0","UMLS:C0152171","ICD10CM:I27.0"],"synonyms":[{"name":"primary pulmonary hypertension","type":"exact"},{"name":"pulmonary hypertension, primary","type":"exact"}],"termid":"MONDO:0001999","terms_by_termid":{"MONDO:0009935":null},"xrefs":{"Monarch":{"xref_id":"0001999"}}}


id: GO:1901307
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of spermidine biosynthetic process.","definition_xrefs":["GOC:pm","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"positive regulation of amine metabolic process","termid":"GO:0033240"},{"relation_name":"is_a","term_name":"regulation of spermidine biosynthetic process","termid":"GO:1901304"},{"relation_name":"positively_regulates","term_name":"spermidine biosynthetic process","termid":"GO:0008295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of spermidine biosynthetic process","synonyms":[{"name":"activation of spermidine anabolism","type":"exact"},{"name":"activation of spermidine biosynthesis","type":"exact"},{"name":"activation of spermidine biosynthetic process","type":"narrow"},{"name":"activation of spermidine formation","type":"exact"},{"name":"activation of spermidine synthesis","type":"exact"},{"name":"positive regulation of spermidine anabolism","type":"exact"},{"name":"positive regulation of spermidine biosynthesis","type":"exact"},{"name":"positive regulation of spermidine formation","type":"exact"},{"name":"positive regulation of spermidine synthesis","type":"exact"},{"name":"up regulation of spermidine anabolism","type":"exact"},{"name":"up regulation of spermidine biosynthesis","type":"exact"},{"name":"up regulation of spermidine biosynthetic process","type":"exact"},{"name":"up regulation of spermidine formation","type":"exact"},{"name":"up regulation of spermidine synthesis","type":"exact"},{"name":"up-regulation of spermidine anabolism","type":"exact"},{"name":"up-regulation of spermidine biosynthesis","type":"exact"},{"name":"up-regulation of spermidine biosynthetic process","type":"exact"},{"name":"up-regulation of spermidine formation","type":"exact"},{"name":"up-regulation of spermidine synthesis","type":"exact"},{"name":"upregulation of spermidine anabolism","type":"exact"},{"name":"upregulation of spermidine biosynthesis","type":"exact"},{"name":"upregulation of spermidine biosynthetic process","type":"exact"},{"name":"upregulation of spermidine formation","type":"exact"},{"name":"upregulation of spermidine synthesis","type":"exact"}],"termid":"GO:1901307"}


id: GO:1900643
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of chanoclavine-I biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of chanoclavine-I biosynthetic process (obsolete GO:1900643)","synonyms":[{"name":"regulation of chanoclavine-I anabolism","type":"exact"},{"name":"regulation of chanoclavine-I biosynthesis","type":"exact"},{"name":"regulation of chanoclavine-I formation","type":"exact"},{"name":"regulation of chanoclavine-I synthesis","type":"exact"}],"termid":"GO:1900643"}


id: MONDO:0013750
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any atrial heart septal defect in which the cause of the disease is a mutation in the CITED2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrial septal defect","termid":"MONDO:0006664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"atrial septal defect 8","secondary_identifiers":["UMLS:C3280790","DOID:0110113","MEDGEN:482420","OMIM:614433"],"synonyms":[{"name":"ASD8","type":"exact"},{"name":"CITED2 atrial heart septal defect","type":"exact"},{"name":"atrial heart septal defect caused by mutation in CITED2","type":"exact"},{"name":"atrial heart septal defect type 8","type":"exact"},{"name":"atrial septal defect 8","type":"exact"},{"name":"atrial septal defect type 8","type":"exact"}],"termid":"MONDO:0013750","xrefs":{"Monarch":{"xref_id":"0013750"}}}


id: GO:0030558
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Specifies the site of pseudouridylation in an RNA molecule by base pairing with a short sequence around the target residue.","definition_xrefs":["GOC:mah","PMID:12457565"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA modification guide activity","termid":"GO:0030555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0003723","GO:0005488"],"is_obsolete":false,"name":"RNA pseudouridylation guide activity","termid":"GO:0030558"}


id: PBO:0068119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 426","termid":"PBO:0068119"}


id: PBO:0070567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 33","termid":"PBO:0070567"}


id: FYPO:0000060
data:
  {"alleles_by_uniquename":{"SJAG_04332:allele-1":{"allele_type":"amino_acid_mutation","description":"I30T,T572P","gene_uniquename":"SJAG_04332","name":"cdc25-D9","uniquename":"SJAG_04332:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121062],"is_not":false,"rel_names":["has_part","is_a"],"summary":null,"term":"FYPO:0007701"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell contains a single nucleus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular physical quality phenotype during vegetative growth","termid":"FYPO:0001321"},{"relation_name":"is_a","term_name":"mononucleate","termid":"FYPO:0002731"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04332":null},"genotype_count":1,"genotypes_by_uniquename":{"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"mononucleate vegetative cell","references_by_uniquename":{"PMID:25866389":null},"single_locus_annotated_genes":["SJAG_04332"],"single_locus_genotype_uniquenames":["cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"mononucleate during vegetative growth","type":"exact"},{"name":"mononucleate vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000060","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0007701":null,"FYPO_EXT:0000001":null}}


id: MONDO:0005951
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete sarcocystosis (obsolete MONDO:0005951)","termid":"MONDO:0005951","xrefs":{"Monarch":{"xref_id":"0005951"}}}


id: GO:0101025
data:
  {"annotated_genes":["SJAG_03313","SJAG_04509","SJAG_04883","SJAG_04319","SJAG_03219","SJAG_04972"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111735,99468,100136,89660,94829,112147],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0101026"}]},"cv_name":"biological_process","definition":"The process in which a nuclear membrane is synthesized, aggregates, and bonds together.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane biogenesis","termid":"GO:0044091"},{"relation_name":"part_of","term_name":"nuclear membrane organization","termid":"GO:0071763"}],"gene_count":6,"genes_by_uniquename":{"SJAG_03219":null,"SJAG_03313":null,"SJAG_04319":null,"SJAG_04509":null,"SJAG_04883":null,"SJAG_04972":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0061024","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"nuclear membrane biogenesis","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0101025","terms_by_termid":{"GO:0101026":null}}


id: MONDO:0014681
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any thyroid cancer, nonmedullary in which the cause of the disease is a mutation in the FOXE1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thyroid gland follicular carcinoma","termid":"MONDO:0005034"},{"relation_name":"is_a","term_name":"familial papillary or follicular thyroid carcinoma","termid":"MONDO:0017895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"thyroid cancer, nonmedullary, 4","secondary_identifiers":["MEDGEN:907624","OMIM:616534","GARD:16132","UMLS:C4225293"],"synonyms":[{"name":"FOXE1 thyroid cancer, nonmedullary","type":"exact"},{"name":"NMTC4","type":"related"},{"name":"thyroid cancer, nonmedullary caused by mutation in FOXE1","type":"exact"},{"name":"thyroid cancer, nonmedullary, 4","type":"exact"},{"name":"thyroid cancer, nonmedullary, type 4","type":"exact"}],"termid":"MONDO:0014681","xrefs":{"Monarch":{"xref_id":"0014681"}}}


id: PBO:0064957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 9","termid":"PBO:0064957"}


id: MOD:01290
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because redundant and identical to MOD:00465. Remap to MOD:00465.","definition_xrefs":["Unimod:425","PubMed:11857757","PubMed:9252331","PubMed:12175151","PubMed:12686488"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:01290 dihydroxylated residue - site F (obsolete MOD:01290)","synonyms":[{"name":"Dioxidation","type":"related"},{"name":"dihydroxy","type":"related"}],"termid":"MOD:01290"}


id: MONDO:0014621
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Brugada syndrome in which the cause of the disease is a mutation in the KCND3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Brugada syndrome","termid":"MONDO:0015263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"Brugada syndrome 9","secondary_identifiers":["GARD:16104","OMIM:616399","UMLS:C4225340","MEDGEN:903155","DOID:0110226"],"synonyms":[{"name":"BRGDA9","type":"exact"},{"name":"Brugada syndrome 9","type":"exact"},{"name":"Brugada syndrome caused by mutation in KCND3","type":"exact"},{"name":"Brugada syndrome type 9","type":"exact"},{"name":"KCND3 Brugada syndrome","type":"exact"}],"termid":"MONDO:0014621","xrefs":{"Monarch":{"xref_id":"0014621"}}}


id: GO:0035380
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-3-hydroxyacyl-CoA + NAD(P)+ = 3-oxoacyl-CoA + NAD(P)H + H+, where the acyl group is a very long-chain fatty acid residue. A very long-chain fatty acid has an aliphatic tail containing more than 22 carbons.","definition_xrefs":["GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"very long-chain-3-hydroxyacyl-CoA dehydrogenase activity","synonyms":[{"name":"very-long-chain-3-hydroxyacyl-CoA dehydrogenase activity","type":"exact"}],"termid":"GO:0035380"}


id: FYPO:0001835
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium that is more acidic than standard fission yeast media (about 5.8).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0000257","FYPO:0002057","FYPO:0002058","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"normal growth on acidic medium","synonyms":[{"name":"normal cell population growth on acidic medium","type":"exact"},{"name":"normal cellular response to acidity","type":"related"},{"name":"normal vegetative cell population growth on acidic medium","type":"exact"}],"termid":"FYPO:0001835"}


id: PBO:0063152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pro-apoptotic WT1 regulator","termid":"PBO:0063152"}


id: GO:1900181
data:
  {"annotated_genes":["SJAG_01084","SJAG_01311"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[116311],"is_not":false,"summary":null,"term":"GO:1900181"},{"annotations":[107616],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042308"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein localization to nucleus.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to nucleus","termid":"GO:1900180"},{"relation_name":"is_a","term_name":"negative regulation of protein localization","termid":"GO:1903828"},{"relation_name":"negatively_regulates","term_name":"protein localization to nucleus","termid":"GO:0034504"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01084":null,"SJAG_01311":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein localization to nucleus","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of protein localisation to nucleus","type":"exact"},{"name":"down regulation of protein localization in cell nucleus","type":"exact"},{"name":"down regulation of protein localization in nucleus","type":"exact"},{"name":"down regulation of protein localization to nucleus","type":"exact"},{"name":"down-regulation of protein localisation to nucleus","type":"exact"},{"name":"down-regulation of protein localization in cell nucleus","type":"exact"},{"name":"down-regulation of protein localization in nucleus","type":"exact"},{"name":"down-regulation of protein localization to nucleus","type":"exact"},{"name":"downregulation of protein localisation to nucleus","type":"exact"},{"name":"downregulation of protein localization in cell nucleus","type":"exact"},{"name":"downregulation of protein localization in nucleus","type":"exact"},{"name":"downregulation of protein localization to nucleus","type":"exact"},{"name":"inhibition of protein localisation to nucleus","type":"narrow"},{"name":"inhibition of protein localization in cell nucleus","type":"narrow"},{"name":"inhibition of protein localization in nucleus","type":"narrow"},{"name":"inhibition of protein localization to nucleus","type":"narrow"},{"name":"negative regulation of protein localisation to nucleus","type":"exact"},{"name":"negative regulation of protein localization in cell nucleus","type":"exact"},{"name":"negative regulation of protein localization in nucleus","type":"exact"}],"termid":"GO:1900181","terms_by_termid":{"GO:0042308":null,"GO:1900181":null}}


id: PBO:0042772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 78","termid":"PBO:0042772"}


id: GO:0034175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of toll-like receptor 12 signaling pathway.","definition_xrefs":["PMID:16551253","PMID:17328678","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039531"},{"relation_name":"regulates","term_name":"toll-like receptor 12 signaling pathway","termid":"GO:0034174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of toll-like receptor 12 signaling pathway","synonyms":[{"name":"regulation of TLR12 signaling pathway","type":"exact"},{"name":"regulation of toll-like receptor 12 signalling pathway","type":"exact"}],"termid":"GO:0034175"}


id: PBO:0002916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VanZ-like family protein","termid":"PBO:0002916"}


id: GO:0048107
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 4-amino-3-isothiazolinone, five-membered saturated heterocyclic ring structures containing a sulfur and a nitrogen in the 1-position and 2-positions respectively.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"4-amino-3-isothiazolidinone biosynthetic process","synonyms":[{"name":"4-amino-3-isothiazolidinone anabolism","type":"exact"},{"name":"4-amino-3-isothiazolidinone biosynthesis","type":"exact"},{"name":"4-amino-3-isothiazolidinone formation","type":"exact"},{"name":"4-amino-3-isothiazolidinone synthesis","type":"exact"}],"termid":"GO:0048107"}


id: GO:0046461
data:
  {"annotated_genes":["SJAG_02089","SJAG_03604","SJAG_01036","SJAG_02100","SJAG_02543"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76032],"is_not":false,"summary":null,"term":"GO:0046461"},{"annotations":[73170,119432,93670,100249],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019433"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of neutral lipids, lipids only soluble in solvents of very low polarity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neutral lipid metabolic process","termid":"GO:0006638"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01036":null,"SJAG_02089":null,"SJAG_02100":null,"SJAG_02543":null,"SJAG_03604":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"neutral lipid catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"neutral lipid breakdown","type":"exact"},{"name":"neutral lipid catabolism","type":"exact"},{"name":"neutral lipid degradation","type":"exact"}],"termid":"GO:0046461","terms_by_termid":{"GO:0019433":null,"GO:0046461":null}}


id: PBO:0043689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 4I1 pseudogene 2","termid":"PBO:0043689"}


id: MONDO:0011548
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"ataxic cerebral palsy","termid":"MONDO:0000397"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebral palsy, ataxic, autosomal recessive","secondary_identifiers":["OMIM:605388","ICD9:343.8"],"synonyms":[{"name":"Acp","type":"related"},{"name":"ataxic cerebral palsy","type":"related"},{"name":"cerebral palsy ataxic","type":"related"},{"name":"cerebral palsy, ataxic, autosomal recessive","type":"exact"}],"termid":"MONDO:0011548","xrefs":{"Monarch":{"xref_id":"0011548"}}}


id: PBO:0084379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Low-affinity amino acid permease; may act to supply the cell with amino acids as nitrogen source in nitrogen-poor conditions; transcription is induced under conditions of sulfur limitation; plays a role in regulating Ty1 transposition","termid":"PBO:0084379"}


id: FYPO:0000524
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of peroxisomal transport is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased intracellular transport","termid":"FYPO:0000464"},{"relation_name":"is_a","term_name":"abnormal peroxisomal transport","termid":"FYPO:0000522"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"decreased peroxisomal transport","synonyms":[{"name":"decreased peroxisomal transport during mitotic cell cycle","type":"related"},{"name":"decreased peroxisomal transport during vegetative growth","type":"exact"},{"name":"peroxisomal transport: decreased","type":"related"},{"name":"reduced peroxisomal transport","type":"exact"}],"termid":"FYPO:0000524"}


