# terms

id: GO:1904897
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of hepatic stellate cell proliferation.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:15358192"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of fibroblast proliferation","termid":"GO:0048145"},{"relation_name":"regulates","term_name":"hepatic stellate cell proliferation","termid":"GO:1990922"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of hepatic stellate cell proliferation","synonyms":[{"name":"regulation of Ito cell proliferation","type":"exact"},{"name":"regulation of hepatic perisinusoidal cell proliferation","type":"exact"},{"name":"regulation of perisinusoidal cell proliferation","type":"exact"}],"termid":"GO:1904897"}


id: GO:0007139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle phase which follows anaphase II of meiosis and during which the chromosomes arrive at the poles of the cell and the division of the cytoplasm starts.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telophase","termid":"GO:0051326"},{"relation_name":"is_a","term_name":"meiosis II cell cycle phase","termid":"GO:0098765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"meiotic telophase II","termid":"GO:0007139"}


id: GO:2000070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of response to water deprivation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stress","termid":"GO:0080134"},{"relation_name":"regulates","term_name":"response to water deprivation","termid":"GO:0009414"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of response to water deprivation","synonyms":[{"name":"regulation of drought tolerance","type":"related"},{"name":"regulation of response to dehydration","type":"exact"},{"name":"regulation of response to drought","type":"exact"},{"name":"regulation of response to thirst","type":"exact"}],"termid":"GO:2000070"}


id: GO:0048684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the rate of collateral sprouting of an intact axon as a result of injury to an axon.","definition_xrefs":["GOC:lm","GOC:dgh","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of collateral sprouting","termid":"GO:0048672"},{"relation_name":"is_a","term_name":"positive regulation of axon regeneration","termid":"GO:0048680"},{"relation_name":"is_a","term_name":"regulation of collateral sprouting of intact axon in response to injury","termid":"GO:0048683"},{"relation_name":"positively_regulates","term_name":"collateral sprouting of intact axon in response to injury","termid":"GO:0048673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of collateral sprouting of intact axon in response to injury","synonyms":[{"name":"activation of collateral sprouting of intact axon in response to injury","type":"narrow"},{"name":"stimulation of collateral sprouting of intact axon in response to injury","type":"narrow"},{"name":"up regulation of collateral sprouting of intact axon in response to injury","type":"exact"},{"name":"up-regulation of collateral sprouting of intact axon in response to injury","type":"exact"},{"name":"upregulation of collateral sprouting of intact axon in response to injury","type":"exact"}],"termid":"GO:0048684"}


id: PR:Q9P7D9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rsv1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7D9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein rsv1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP4H10.09","synonyms":[{"name":"Spom972h-rsv1","type":"exact"},{"name":"required for stationary phase viability protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7D9"}


id: PBO:0089504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane-associated serine-rich cell wall sensor Wsc1","termid":"PBO:0089504"}


id: PBO:0051741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrator complex subunit 8","termid":"PBO:0051741"}


id: PBO:0088399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L14","termid":"PBO:0088399"}


id: MONDO:0014878
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"patent ductus arteriosus","termid":"MONDO:0011827"},{"relation_name":"is_a","term_name":"TFAP2B-related congenital heart disease spectrum disorder","termid":"MONDO:1010098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"patent ductus arteriosus 2","secondary_identifiers":["OMIM:617035","UMLS:C4284595","GARD:18489","MEDGEN:924886"],"synonyms":[{"name":"PDA2","type":"exact"},{"name":"patent ductus arteriosus 2","type":"exact"},{"name":"patent ductus arteriosus 2; PDA2","type":"exact"},{"name":"patent ductus arteriosus type 2","type":"exact"}],"termid":"MONDO:0014878","xrefs":{"Monarch":{"xref_id":"0014878"}}}


id: MONDO:0023561
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"intellectual disability","termid":"MONDO:0001071"},{"relation_name":"excluded_subClassOf","term_name":"ichthyosis","termid":"MONDO:0019269"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Koone-Rizzo-Elias syndrome","secondary_identifiers":["MESH:C537023","UMLS:C2931397","MEDGEN:419791"],"synonyms":[{"name":"Koone Rizzo Elias syndrome","type":"related"},{"name":"ichthyosis, intellectual disability and asymptomatic spasticity","type":"related"},{"name":"ichthyosis, mental retardation and asymptomatic spasticity","type":"related"}],"termid":"MONDO:0023561","xrefs":{"Monarch":{"xref_id":"0023561"}}}


id: MONDO:0005703
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Churg-Strauss syndrome (obsolete MONDO:0005703)","termid":"MONDO:0005703","xrefs":{"Monarch":{"xref_id":"0005703"}}}


id: MOD:01606
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to 5-glutamyl 2-aminoadipic 6-phosphoric anhydride.","definition_xrefs":["PubMed:19620981","RESID:AA0503"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amidated residue","termid":"MOD:00674"},{"relation_name":"is_a","term_name":"phosphorus containing modified residue","termid":"MOD:00861"},{"relation_name":"is_a","term_name":"modified L-glutamic acid residue","termid":"MOD:00906"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-glutamyl 2-aminoadipic 6-phosphoric anhydride","synonyms":[{"name":"(2S)-2-([(4S)-4-amino-4-carboxybutanoyl]amino)-6-oxo-6-(phosphonooxy)hexanoic acid","type":"exact"},{"name":"5-glutamyl 2-aminoadipic 6-phosphoric anhydride","type":"exact"}],"termid":"MOD:01606"}


id: PBO:0083795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein of unknown function; exhibits variable expression during colony morphogenesis; overexpression permits survival without protein phosphatase 2A, inhibits growth, and induces a filamentous phenotype; PAM1 has a paralog, SVL3, that arose from the whole genome duplication","termid":"PBO:0083795"}


id: PBO:0073473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sarcoglycan delta","termid":"PBO:0073473"}


id: PBO:0029111
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_cell_cycle_phase","termid":"PBO:0029111"}


id: PR:Q9USS6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A lysophosphatidic acid phosphatase type 6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acid phosphatase SPBC4.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4.06","secondary_identifiers":["UniProtKB:Q9USS6"],"synonyms":[{"name":"Spom972h-ACP6","type":"exact"}],"termid":"PR:Q9USS6"}


id: GO:0019803
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The carboxylation of peptidyl-aspartic acid to form peptidyl-L-beta-carboxyaspartic acid.","definition_xrefs":["RESID:AA0304"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-aspartic acid carboxylation (obsolete GO:0019803)","termid":"GO:0019803"}


id: GO:0061552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of ganglion are generated and organized.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue morphogenesis","termid":"GO:0048729"},{"relation_name":"part_of","term_name":"ganglion development","termid":"GO:0061548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ganglion morphogenesis","synonyms":[{"name":"ganglia morphogenesis","type":"related"}],"termid":"GO:0061552"}


id: PBO:0070355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 28","termid":"PBO:0070355"}


id: SO:0001237
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence feature that corresponds to a single amino acid residue in a polypeptide.","definition_xrefs":["RSC:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"},{"relation_name":"part_of","term_name":"polypeptide","termid":"SO:0000104"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino_acid","secondary_identifiers":["http://en.wikipedia.org/wiki/Amino_acid"],"synonyms":[{"name":"amino acid","type":"exact"}],"termid":"SO:0001237"}


id: PR:P40376
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pka1 gene.","definition_xrefs":["UniProtKB:P40376","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cAMP-dependent protein kinase catalytic subunit (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC106.10","synonyms":[{"name":"Spom972h-pka1","type":"exact"}],"termid":"PR:P40376"}


id: PBO:0031164
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_glutamine_import","termid":"PBO:0031164"}


id: MONDO:0012869
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal dominant non-syndromic intellectual disability in which the cause of the disease is a mutation in the ZBTB18 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant non-syndromic intellectual disability","termid":"MONDO:0015802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"intellectual disability, autosomal dominant 22","secondary_identifiers":["OMIM:612337","DOID:0070052","MESH:C567346"],"synonyms":[{"name":"MRD22","type":"exact"},{"name":"ZBTB18 autosomal dominant non-syndromic intellectual disability","type":"exact"},{"name":"autosomal dominant intellectual disability 22","type":"exact"},{"name":"autosomal dominant mental retardation 22","type":"exact"},{"name":"autosomal dominant non-syndromic intellectual disability 22","type":"related"},{"name":"autosomal dominant non-syndromic intellectual disability caused by mutation in ZBTB18","type":"exact"},{"name":"chromosome 1Q43-q44 deletion syndrome","type":"related"},{"name":"chromosome 1Qter deletion syndrome","type":"related"},{"name":"intellectual disability, autosomal dominant 22","type":"exact"},{"name":"intellectual disability, autosomal dominant type 22","type":"exact"},{"name":"mental retardation, autosomal dominant 22","type":"related"},{"name":"mental retardation, autosomal dominant type 22","type":"exact"}],"termid":"MONDO:0012869","xrefs":{"Monarch":{"xref_id":"0012869"}}}


id: GO:0090325
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of the self-propelled movement of a cell or organism from one location to another in a behavioral context; the aspect of locomotory behavior having to do with movement.","definition_xrefs":["GOC:tb","GOC:dph","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of locomotion","termid":"GO:0040012"},{"relation_name":"is_a","term_name":"regulation of behavior","termid":"GO:0050795"},{"relation_name":"regulates","term_name":"locomotion involved in locomotory behavior","termid":"GO:0031987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of locomotion involved in locomotory behavior","termid":"GO:0090325"}


id: GO:0002727
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of natural killer cell cytokine production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of natural killer cell mediated immunity","termid":"GO:0002715"},{"relation_name":"is_a","term_name":"regulation of cytokine production involved in immune response","termid":"GO:0002718"},{"relation_name":"regulates","term_name":"natural killer cell cytokine production","termid":"GO:0002370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of natural killer cell cytokine production","synonyms":[{"name":"regulation of NK cell cytokine production","type":"exact"}],"termid":"GO:0002727"}


id: MONDO:0004358
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma of the larynx that arises from the subglottic area.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"subglottis cancer","termid":"MONDO:0001293"},{"relation_name":"is_a","term_name":"laryngeal carcinoma","termid":"MONDO:0002358"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"subglottis carcinoma","secondary_identifiers":["SCTID:372104008","UMLS:C1299239","MEDGEN:226968","DOID:7764","NCIT:C5972"],"synonyms":[{"name":"cancer of subglottis","type":"broad"},{"name":"cancer of the subglottis","type":"broad"},{"name":"carcinoma of subglottis","type":"exact"},{"name":"carcinoma of the subglottis","type":"exact"},{"name":"subglottic cancer","type":"broad"},{"name":"subglottic carcinoma","type":"exact"},{"name":"subglottic throat cancer","type":"broad"},{"name":"subglottis carcinoma","type":"exact"}],"termid":"MONDO:0004358","xrefs":{"Monarch":{"xref_id":"0004358"}}}


id: PBO:0048414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GATA binding protein 3","termid":"PBO:0048414"}


id: GO:0033112
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The double lipid bilayer enclosing the cyanelle and separating its contents from the rest of the cytoplasm; includes the intermembrane space.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid envelope","termid":"GO:0009526"},{"relation_name":"part_of","term_name":"cyanelle","termid":"GO:0009842"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"cyanelle envelope","termid":"GO:0033112"}


id: MONDO:0100446
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A retinopathy caused by biallelic variants in the CNGB3 gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"muscular channelopathy","termid":"MONDO:0019119"},{"relation_name":"is_a","term_name":"hereditary neuromuscular disease","termid":"MONDO:0100546"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CNGB3-related retinopathy","synonyms":[{"name":"ACHM1","type":"narrow"},{"name":"ACHM1 (formerly)","type":"narrow"},{"name":"ACHM1, formerly","type":"narrow"},{"name":"ACHM3","type":"narrow"},{"name":"CNGB3 achromatopsia","type":"narrow"},{"name":"CNGB3 retinopathy","type":"exact"},{"name":"RMCH1","type":"narrow"},{"name":"RMCH1 (formerly)","type":"narrow"},{"name":"Rod monochromacy 1 (formerly)","type":"narrow"},{"name":"Rod monochromatism 1 (formerly)","type":"narrow"},{"name":"achromatopsia 3","type":"narrow"},{"name":"achromatopsia caused by mutation in CNGB3","type":"narrow"},{"name":"achromatopsia type 3","type":"narrow"},{"name":"achromatopsia with myopia","type":"narrow"},{"name":"rod monochromacy 1","type":"narrow"},{"name":"rod monochromacy 1, formerly","type":"narrow"},{"name":"rod monochromatism 1","type":"narrow"},{"name":"rod monochromatism 1, formerly","type":"narrow"},{"name":"total colorblindness with myopia","type":"narrow"}],"termid":"MONDO:0100446","xrefs":{"Monarch":{"xref_id":"0100446"}}}


id: MONDO:1040045
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any ciliopathy caused by variants in the BBS12 gene.","definition_xrefs":["PMID:20827784","PMID:19797195"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ciliopathy","termid":"MONDO:0005308"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BBS12-related ciliopathy","synonyms":[{"name":"BBS12-related ciliopathy","type":"exact"}],"termid":"MONDO:1040045","xrefs":{"Monarch":{"xref_id":"1040045"}}}


id: GO:0060925
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of cells to ventricular cardiac muscle cell fates and their capacity to differentiate into cardiac muscle cells of the ventricle. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac muscle cell fate commitment","termid":"GO:0060923"},{"relation_name":"part_of","term_name":"ventricular cardiac muscle cell differentiation","termid":"GO:0055012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventricular cardiac muscle cell fate commitment","synonyms":[{"name":"ventricular cardiomyocyte cell fate commitment","type":"exact"},{"name":"ventricular heart muscle cell fate commitment","type":"exact"}],"termid":"GO:0060925"}


id: GO:0047139
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: homocystine + 2 reduced glutathione = oxidized glutathione + 2 homocysteine.","definition_xrefs":["MetaCyc:1.8.4.1-RXN","EC:1.8.4.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor","termid":"GO:0016671"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"glutathione-homocystine transhydrogenase activity","secondary_identifiers":["RHEA:11464"],"synonyms":[{"name":"glutathione:homocystine oxidoreductase activity","type":"related"}],"termid":"GO:0047139"}


id: FYPO:0005158
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of (1->6)-beta-D-glucan measured in the cell wall is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cell wall beta-glucan level","termid":"FYPO:0001082"},{"relation_name":"is_a","term_name":"decreased cell wall galactomannan level","termid":"FYPO:0002265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased cell wall (1->6)-beta-D-glucan level","synonyms":[{"name":"decreased cell wall (1->6)-beta-D-glucan accumulation","type":"related"},{"name":"decreased cell wall (1->6)-beta-D-glucan level during mitotic cell cycle","type":"related"},{"name":"decreased cell wall (1->6)-beta-D-glucan level during vegetative growth","type":"exact"},{"name":"reduced cell wall (1->6)-beta-D-glucan level","type":"exact"}],"termid":"FYPO:0005158"}


id: PBO:0089540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterol transfer protein Osh42","termid":"PBO:0089540"}


id: PBO:0047855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, 5-azacytidine type, common, fra(1)(q42)","termid":"PBO:0047855"}


id: PBO:0036307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tricalbin, C2 domain protein (phospholipid binding) ER-plasma membrane tethering protein Tcb2","termid":"PBO:0036307"}


id: PBO:0015218
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae SEC14","termid":"PBO:0015218"}


id: PBO:0091314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMN complex subunit Yip12/Gem2","termid":"PBO:0091314"}


id: PBO:0075955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STAM binding protein","termid":"PBO:0075955"}


id: PBO:0048866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GOLGA2 pseudogene 11","termid":"PBO:0048866"}


id: GO:0006088
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete acetate to acetyl-CoA (obsolete GO:0006088)","synonyms":[{"name":"acetate to acetyl-CoA","type":"exact"}],"termid":"GO:0006088"}


id: PBO:0076880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 29","termid":"PBO:0076880"}


id: GO:0090571
data:
  {"annotated_genes":["SJAG_00290","SJAG_03095","SJAG_00958","SJAG_04921","SJAG_00861"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[108810,93024,100666],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0160051"},{"annotations":[72170,73022],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017054"}]},"cv_name":"cellular_component","definition":"A protein complex, located in the nucleus, that possesses activity that prevents or downregulates transcription from a RNA polymerase II promoter.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription repressor complex","termid":"GO:0017053"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00290":null,"SJAG_00861":null,"SJAG_00958":null,"SJAG_03095":null,"SJAG_04921":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"RNA polymerase II transcription repressor complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0090571","terms_by_termid":{"GO:0017054":null,"GO:0160051":null}}


id: MONDO:0019032
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-linked intellectual disability with isolated growth hormone deficiency","secondary_identifiers":["GARD:16677","MEDGEN:341145","ICD10CM:E23.0","Orphanet:67045","UMLS:C1848068"],"synonyms":[{"name":"MRGH","type":"exact"}],"termid":"MONDO:0019032","xrefs":{"Monarch":{"xref_id":"0019032"}}}


id: PBO:0029508
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_swollen_spore","termid":"PBO:0029508"}


id: PBO:0081641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF567 divergent transcript","termid":"PBO:0081641"}


id: PR:Q9UT62
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC513.04 gene.","definition_xrefs":["UniProtKB:Q9UT62","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C513.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC513.04","synonyms":[{"name":"Spom972h-SPAC513.04","type":"exact"}],"termid":"PR:Q9UT62"}


id: GO:0016808
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Was not defined before being made obsolete.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete proprotein convertase activity (obsolete GO:0016808)","synonyms":[{"name":"proprotein convertase activity","type":"exact"}],"termid":"GO:0016808"}


id: PBO:0080780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XK related, Y-linked, pseudogene","termid":"PBO:0080780"}


id: GO:0120339
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The short portion of the radial spoke that is directly anchored to the A microtubule of an axonemal microtubule doublet.","definition_xrefs":["PMID:22754630","GOC:krc","PMID:25694453"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"radial spoke","termid":"GO:0001534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"radial spoke base","termid":"GO:0120339"}


id: PBO:0061189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear-encoded mitochondrial tRNA-Val (TAC) 1-1","termid":"PBO:0061189"}


id: PBO:0117184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAH5 antisense RNA 1","termid":"PBO:0117184"}


id: GO:0044206
data:
  {"annotated_genes":["SJAG_04713","SJAG_03708","SJAG_04354","SJAG_04709","SJAG_00533"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[69537,89225,90219,93746,94744],"is_not":false,"summary":null,"term":"GO:0044206"}]},"cv_name":"biological_process","definition":"Any process which produces UMP, uridine monophosphate, from derivatives of it (e.g. cytidine, uridine, cytosine) without de novo synthesis.","definition_xrefs":["GOC:ecd","PMID:15096496"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UMP biosynthetic process","termid":"GO:0006222"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleotide salvage","termid":"GO:0010138"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00533":null,"SJAG_03708":null,"SJAG_04354":null,"SJAG_04709":null,"SJAG_04713":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"UMP salvage","references_by_uniquename":{"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"UMP biosynthesis via nucleoside salvage pathway","type":"exact"},{"name":"UMP biosynthetic process via nucleoside salvage pathway","type":"exact"}],"termid":"GO:0044206","terms_by_termid":{"GO:0044206":null}}


id: GO:0070900
data:
  {"annotated_genes":["SJAG_04700","SJAG_04367","SJAG_00186","SJAG_00865","SJAG_02302","SJAG_00255","SJAG_00358"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[79789],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070901"},{"annotations":[120485,77159],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072670"},{"annotations":[96038,108693],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990799"},{"annotations":[77908,94569],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070899"}]},"cv_name":"biological_process","definition":"The covalent alteration of one or more nucleotides within a mitochondrial tRNA molecule to produce a mitochondrial tRNA molecule with a sequence that differs from that coded genetically.","definition_xrefs":["GOC:mcc","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA modification","termid":"GO:0006400"},{"relation_name":"is_a","term_name":"tRNA threonylcarbamoyladenosine metabolic process","termid":"GO:0070525"},{"relation_name":"is_a","term_name":"mitochondrial tRNA processing","termid":"GO:0090646"},{"relation_name":"is_a","term_name":"mitochondrial RNA modification","termid":"GO:1900864"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00186":null,"SJAG_00255":null,"SJAG_00358":null,"SJAG_00865":null,"SJAG_02302":null,"SJAG_04367":null,"SJAG_04700":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0140053","GO:0010467","GO:0008150","GO:0006399"],"is_obsolete":false,"name":"mitochondrial tRNA modification","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-6787450"],"termid":"GO:0070900","terms_by_termid":{"GO:0070899":null,"GO:0070901":null,"GO:0072670":null,"GO:1990799":null}}


id: SO:0000048
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"To substitute a subsection of sequence for another.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000048 substitute (obsolete SO:0000048)","termid":"SO:0000048"}


id: MONDO:0009655
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare autosomal recessive lysosomal storage disease caused by deficiency of the enzyme heparan sulfate sulfatase. It is characterized by behavioral changes, sleep disturbances, mental developmental delays and seizures.","definition_xrefs":["NCIT:C84897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucopolysaccharidosis type 3","termid":"MONDO:0018937"},{"relation_name":"is_a","term_name":"lysosomal storage disease with skeletal involvement","termid":"MONDO:0800088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0002561","MONDO:0005066"],"is_obsolete":false,"name":"mucopolysaccharidosis type 3A","secondary_identifiers":["UMLS:C0086647","GARD:7071","NANDO:1200101","OMIM:252900","icd11.foundation:182200345","Orphanet:79269","SCTID:41572006","DOID:0111395","NANDO:2201174","MEDGEN:39264"],"synonyms":[{"name":"MPS 3A","type":"related"},{"name":"MPS III A","type":"exact"},{"name":"MPS IIIA","type":"related"},{"name":"MPS3A","type":"exact"},{"name":"MPSIIIA","type":"exact"},{"name":"Sanfilippo A","type":"exact"},{"name":"Sanfilippo syndrome a","type":"exact"},{"name":"Sanfilippo syndrome type A","type":"exact"},{"name":"heparan sulfamidase deficiency","type":"exact"},{"name":"heparan sulfate sulfatase deficiency","type":"related"},{"name":"heparan sulphate sulfatase deficiency","type":"related"},{"name":"heparane sulfamidase deficiency","type":"related"},{"name":"mucopoly-saccharidosis type 3A","type":"related"},{"name":"mucopolysaccharidosis type 3A","type":"exact"},{"name":"mucopolysaccharidosis type IIIA","type":"exact"},{"name":"mucopolysaccharidosis type IIIA (Sanfilippo A)","type":"exact"},{"name":"mucopolysaccharidosis, type 3A","type":"related"},{"name":"mucopolysaccharidosis, type IIIA","type":"related"},{"name":"sulfamidase deficiency","type":"related"}],"termid":"MONDO:0009655","xrefs":{"Monarch":{"xref_id":"0009655"}}}


id: MONDO:0002189
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign epithelial neoplasm arising from the sweat glands. It presents as a nodular lesion usually in the scalp, trunk, and proximal extremities. It is characterized by a nodular growth pattern. Complete excision is curative.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hidradenoma","termid":"MONDO:0002805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"nodular hidradenoma","secondary_identifiers":["UMLS:C4505470","NCIT:C7568","ICDO:8402/0","DOID:2061","MEDGEN:1374260","SCTID:253020008"],"synonyms":[{"name":"eccrine nodular hidradenoma","type":"related"},{"name":"nodular hidradenoma","type":"exact"},{"name":"solid and cystic hidradenoma","type":"exact"}],"termid":"MONDO:0002189","xrefs":{"Monarch":{"xref_id":"0002189"}}}


id: PBO:0086205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that associates with mitochondrial ribosome; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; YDL027C is not an essential gene","termid":"PBO:0086205"}


id: PBO:0054910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2324","termid":"PBO:0054910"}


id: PBO:0042555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 18","termid":"PBO:0042555"}


id: MONDO:0018067
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Triploidy is a chromosome abnormality that occurs when there is an extra set of chromosomes present in each cell. Most pregnancies affected by triploidy are lost through early miscarriage. However, reports exist of some affected babies living up to five months. Those that survive are often mosaic. The signs and symptoms associated with triploidy vary but may include a variety of birth defects and an unusually small size. This condition does not run in families and is not associated with maternal or paternal age. Treatment is based on the signs and symptoms present in each person.","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete chromosomal anomaly with cataract (obsolete MONDO:0020226)","termid":"MONDO:0020226"},{"relation_name":"is_a","term_name":"polyploidy","termid":"MONDO:0019934"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"triploidy","secondary_identifiers":["GARD:5295","ICD9:758.89","MEDGEN:90711","NORD:1794","SCTID:66651005","UMLS:C0333693","NCIT:C85204","Orphanet:3376","MESH:D057885","icd11.foundation:1900317965"],"synonyms":[{"name":"chromosome triploidy syndrome","type":"related"},{"name":"triploid syndrome","type":"related"},{"name":"triploidy syndrome","type":"related"}],"termid":"MONDO:0018067","xrefs":{"Monarch":{"xref_id":"0018067"}}}


id: GO:0016859
data:
  {"annotated_genes":["SJAG_04352","SJAG_02620","SJAG_00950","SJAG_01246","SJAG_02308","SJAG_00602","SJAG_04155","SJAG_02551","SJAG_00078","SJAG_02413","SJAG_03601","SJAG_01005","SJAG_03905","SJAG_03238","SJAG_01714","SJAG_00470","SJAG_01270"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[65828,57821,77137,73394,77640,71841,94540,74283,73515,64783,77516,79677,79641,64644,58188,81842,79632],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003755"}]},"cv_name":"molecular_function","definition":"Catalysis of a reaction that interconverts cis and trans isomers. Atoms or groups are termed cis or trans to one another when they lie respectively on the same or on opposite sides of a reference plane identifiable as common among stereoisomers.","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isomerase activity","termid":"GO:0016853"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00078":null,"SJAG_00470":null,"SJAG_00602":null,"SJAG_00950":null,"SJAG_01005":null,"SJAG_01246":null,"SJAG_01270":null,"SJAG_01714":null,"SJAG_02308":null,"SJAG_02413":null,"SJAG_02551":null,"SJAG_02620":null,"SJAG_03238":null,"SJAG_03601":null,"SJAG_03905":null,"SJAG_04155":null,"SJAG_04352":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"cis-trans isomerase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["EC:5.2.-.-"],"termid":"GO:0016859","terms_by_termid":{"GO:0003755":null}}


id: GO:0010317
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Refers to the alpha subunit of the heterodimeric complex that possesses pyrophosphate-dependent phosphofructokinase activity.","definition_xrefs":["PMID:2170409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"pyrophosphate-dependent phosphofructokinase complex","termid":"GO:0010316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"pyrophosphate-dependent phosphofructokinase complex, alpha-subunit complex","synonyms":[{"name":"PFK complex, alpha-subunit","type":"related"}],"termid":"GO:0010317"}


id: GO:0034140
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 3 signaling pathway.","definition_xrefs":["GOC:add","PMID:16551253","PMID:17328678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of toll-like receptor 3 signaling pathway","termid":"GO:0034139"},{"relation_name":"is_a","term_name":"negative regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039532"},{"relation_name":"negatively_regulates","term_name":"toll-like receptor 3 signaling pathway","termid":"GO:0034138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of toll-like receptor 3 signaling pathway","synonyms":[{"name":"negative regulation of TLR3 signaling pathway","type":"exact"},{"name":"negative regulation of toll-like receptor 3 signalling pathway","type":"exact"}],"termid":"GO:0034140"}


id: FYPO:0007328
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sites at which the protein Rad52 (also called Rad22) accumulates is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:31833215","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular physical quality phenotype during vegetative growth","termid":"FYPO:0001321"},{"relation_name":"is_a","term_name":"normal cellular physical quality phenotype","termid":"FYPO:0007723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal number of Rad52 foci during vegetative growth","synonyms":[{"name":"normal number of Rad22 foci","type":"exact"},{"name":"normal number of Rad52 foci during mitotic cell cycle","type":"related"}],"termid":"FYPO:0007328"}


id: PBO:0086012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; SWAT-GFP and mCherry fusion proteins localize to the endoplasmic reticulum; mRNA identified as translated by ribosome profiling data; overlaps the verified gene DIA1/YMR316W","termid":"PBO:0086012"}


id: GO:0006583
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of melanin from other compounds, including tyrosine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tyrosine metabolic process","termid":"GO:0006570"},{"relation_name":"is_a","term_name":"melanin biosynthetic process","termid":"GO:0042438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0019748","GO:0044281"],"is_obsolete":false,"name":"melanin biosynthetic process from tyrosine","synonyms":[{"name":"melanin anabolism from tyrosine","type":"exact"},{"name":"melanin formation from tyrosine","type":"exact"},{"name":"melanin synthesis from tyrosine","type":"exact"}],"termid":"GO:0006583"}


id: PBO:0003790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hsp90 co-chaperone Cdc37","termid":"PBO:0003790"}


id: GO:0090174
data:
  {"annotated_genes":["SJAG_04739","SJAG_03889","SJAG_03536","SJAG_00380","SJAG_02595","SJAG_03403","SJAG_00557","SJAG_01697","SJAG_00430","SJAG_00810","SJAG_02315","SJAG_01324","SJAG_02241","SJAG_01633","SJAG_04978","SJAG_00171","SJAG_03670","SJAG_04513","SJAG_01379","SJAG_03347","SJAG_03848","SJAG_04023","SJAG_02587","SJAG_03552","SJAG_05184","SJAG_00826","SJAG_00204"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80082],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016320"},{"annotations":[78870,76376,101500,72913,81455,101296],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034058"},{"annotations":[97728],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048210"},{"annotations":[80339],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048288"},{"annotations":[77333],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0035493"},{"annotations":[99879,119357,102874,79689,79536,73656,77856,78276,102641,114525,92348,111479,119402],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006906"},{"annotations":[77799,79419,57865,75578],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048280"}]},"cv_name":"biological_process","definition":"The joining of two lipid bilayers to form a single organelle membrane.","definition_xrefs":["GOC:tb","GOC:dph","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle fusion","termid":"GO:0048284"},{"relation_name":"is_a","term_name":"membrane fusion","termid":"GO:0061025"}],"gene_count":27,"genes_by_uniquename":{"SJAG_00171":null,"SJAG_00204":null,"SJAG_00380":null,"SJAG_00430":null,"SJAG_00557":null,"SJAG_00810":null,"SJAG_00826":null,"SJAG_01324":null,"SJAG_01379":null,"SJAG_01633":null,"SJAG_01697":null,"SJAG_02241":null,"SJAG_02315":null,"SJAG_02587":null,"SJAG_02595":null,"SJAG_03347":null,"SJAG_03403":null,"SJAG_03536":null,"SJAG_03552":null,"SJAG_03670":null,"SJAG_03848":null,"SJAG_03889":null,"SJAG_04023":null,"SJAG_04513":null,"SJAG_04739":null,"SJAG_04978":null,"SJAG_05184":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"organelle membrane fusion","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0090174","terms_by_termid":{"GO:0006906":null,"GO:0016320":null,"GO:0034058":null,"GO:0035493":null,"GO:0048210":null,"GO:0048280":null,"GO:0048288":null}}


id: PBO:0002858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human CCDC55 ortholog","termid":"PBO:0002858"}


id: PBO:0046077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4A1 pseudogene 2","termid":"PBO:0046077"}


id: FYPO:0006042
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of mitotic metaphase chromosome recapture is increased.","definition_xrefs":["PMID:27146110","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic metaphase chromosome recapture","termid":"FYPO:0005362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000641"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001320","FYPO:0000641","FYPO:0000337","FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased rate of mitotic metaphase chromosome recapture","synonyms":[{"name":"decreased time to mitotic metaphase chromosome recapture","type":"related"},{"name":"increased rate of chromosome recapture during mitosis","type":"exact"},{"name":"increased rate of chromosome recapture during mitotic metaphase","type":"exact"},{"name":"increased rate of kinetochore retrieval in mitotic metaphase","type":"exact"},{"name":"increased rate of metaphase chromosome recapture during mitotic cell cycle","type":"related"},{"name":"increased rate of mitotic kinetochore retrieval","type":"exact"},{"name":"increased rate of mitotic metaphase chromosome recapture during vegetative growth","type":"exact"},{"name":"increased rate of mitotic metaphase chromosome retrieval to the spindle pole body","type":"exact"},{"name":"increased rate of mitotic sister kinetochore recapture","type":"exact"}],"termid":"FYPO:0006042"}


id: PBO:0005074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element Wtf6","termid":"PBO:0005074"}


id: MONDO:0016087
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Progressive non-infectious anterior vertebral fusion (PAVF) is an early childhood spinal disorder characterized by the gradual onset of thoracic and/or lumbar spine ankylosis often in conjunction with kyphosis with distinctive radiological features.","definition_xrefs":["Orphanet:2062"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"progressive non-infectious anterior vertebral fusion","secondary_identifiers":["MEDGEN:930508","SCTID:719268008","UMLS:C4304839","GARD:18759"],"synonyms":[{"name":"Copenhagen syndrome","type":"exact"}],"termid":"MONDO:0016087","xrefs":{"Monarch":{"xref_id":"0016087"}}}


id: GO:0060657
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of mammary gland cord elongation as a result of a signal being created by a mesenchymal cell that is a precursor to the mammary fat and its subsequent reception and interpretation by an mammary cord epithelial cell.","definition_xrefs":["PMID:12558599","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"},{"relation_name":"is_a","term_name":"regulation of developmental growth","termid":"GO:0048638"},{"relation_name":"regulates","term_name":"mammary gland cord elongation","termid":"GO:0060654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of mammary gland cord elongation by mammary fat precursor cell-epithelial cell signaling","synonyms":[{"name":"regulation of mammary gland cord elongation by mammary fat precursor cell-epithelial cell signalling","type":"exact"}],"termid":"GO:0060657"}


id: PBO:0068121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 428","termid":"PBO:0068121"}


id: PBO:0014304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial guanine nucleotide transporter Gcs1 (predicted)","termid":"PBO:0014304"}


id: MONDO:0008922
data:
  {"annotated_genes":["SJAG_00404"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87422],"is_not":false,"summary":null,"term":"MONDO:0008922"}]},"cv_name":"mondo","definition":"Congenital cataract - hypertrophic cardiomyopathy - mitochrondrial myopathy (CCM) is a mitochondrial disease characterized by cataracts, hypertrophic cardiomyopathy, muscle weakness and lactic acidosis after exercise.","definition_xrefs":["Orphanet:1369"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial substrate carrier disorder","termid":"MONDO:0016801"},{"relation_name":"is_a","term_name":"disorder of phospholipids, sphingolipids and fatty acids biosynthesis","termid":"MONDO:0018117"},{"relation_name":"is_a","term_name":"mitochondrial DNA depletion syndrome","termid":"MONDO:0018158"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00404":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069","MONDO:0002525","MONDO:0005267"],"is_obsolete":false,"name":"Sengers syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:395228","UMLS:C1859317","SCTID:717812000","MESH:C538280","OMIM:212350","GARD:1142","DOID:0080132"],"synonyms":[{"name":"Sengers syndrome","type":"exact"},{"name":"cardiomyopathic mitochondrial DNA depletion syndrome 10","type":"related"},{"name":"cardiomyopathy and cataract","type":"related"},{"name":"cataract and cardiomyopathy","type":"related"},{"name":"congenital cataract-hypertrophic cardiomyopathy-mitochondrial myopathy syndrome","type":"related"},{"name":"mitochondrial DNA depletion syndrome 10","type":"exact"},{"name":"mitochondrial DNA depletion syndrome 10 (Cardiomyopathic type)","type":"related"}],"termid":"MONDO:0008922","terms_by_termid":{"MONDO:0008922":null},"xrefs":{"Monarch":{"xref_id":"0008922"}}}


id: GO:1900242
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of synaptic vesicle endocytosis.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endocytosis","termid":"GO:0030100"},{"relation_name":"is_a","term_name":"regulation of synaptic vesicle recycling","termid":"GO:1903421"},{"relation_name":"regulates","term_name":"synaptic vesicle endocytosis","termid":"GO:0048488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"regulation of synaptic vesicle endocytosis","synonyms":[{"name":"regulation of synaptic vesicle retrieval","type":"related"}],"termid":"GO:1900242"}


id: PBO:0057531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 647","termid":"PBO:0057531"}


id: PBO:0059474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MSL complex subunit 3 pseudogene 1","termid":"PBO:0059474"}


id: GO:0032025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalt ion (Co2+) stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to metal ion","termid":"GO:0010038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cobalt ion","termid":"GO:0032025"}


id: MONDO:0002312
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A mycosis that arises from infection in an immunologically compromised host.","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"systemic mycosis","termid":"MONDO:0000256"},{"relation_name":"is_a","term_name":"fungal infectious disease","termid":"MONDO:0002041"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"opportunistic mycosis","secondary_identifiers":["DOID:2473","MEDGEN:508004","ICD9:118","UMLS:C0029119","ICD9:117.9","SCTID:78999002"],"synonyms":[{"name":"opportunistic mycoses","type":"exact"},{"name":"opportunistic systemic mycoses","type":"narrow"}],"termid":"MONDO:0002312","xrefs":{"Monarch":{"xref_id":"0002312"}}}


id: GO:0001537
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: n 3'-phosphoadenylyl sulfate + dermatan = n adenosine 3',5'-bisphosphate + dermatan 4'-sulfate + n H+.","definition_xrefs":["RHEA:48052"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dermatan sulfotransferase activity","termid":"GO:0120534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016782","GO:0003674"],"is_obsolete":false,"name":"dermatan 4-sulfotransferase activity","secondary_identifiers":["EC:2.8.2.35","Reactome:R-HSA-3636919","Reactome:R-HSA-2022063","Reactome:R-HSA-6786034"],"synonyms":[{"name":"N-acetylgalactosamine 4-O-sulfotransferase activity","type":"related"},{"name":"N-acetylgalactosamine 4-O-sulphotransferase activity","type":"related"}],"termid":"GO:0001537"}


id: GO:0075705
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The uptake of a virus into a host cell that begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicles containing the virus. The vesicle then delivers its viral content to early endosomes, and the process ends when the viral nucleic acid is released into the host cytoplasm by its injection through the endosome membrane.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete viral entry into host cell via clathrin-mediated endocytosis followed by genetic injection through the endosome membrane (obsolete GO:0075705)","synonyms":[{"name":"viral entry into host cell via clathrin-mediated endocytosis followed by genetic injection through the endosome membrane","type":"exact"},{"name":"viral penetration via endocytosis followed by genetic injection through the endosome membrane","type":"exact"}],"termid":"GO:0075705"}


id: GO:1905474
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any canonical Wnt signaling pathway that is involved in stem cell proliferation.","definition_xrefs":["GO_REF:0000060","GOC:TermGenie","GOC:bc","GOC:PARL","PMID:25640183"],"gene_count":0,"genotype_count":0,"name":"obsolete canonical Wnt signaling pathway involved in stem cell proliferation (obsolete GO:1905474)","synonyms":[{"name":"Wnt receptor signaling pathway through beta-catenin involved in stem cell proliferation","type":"exact"},{"name":"Wnt receptor signaling pathway via beta-catenin involved in stem cell proliferation","type":"exact"},{"name":"Wnt receptor signalling pathway through beta-catenin involved in stem cell proliferation","type":"exact"},{"name":"canonical Wnt receptor signaling pathway involved in stem cell proliferation","type":"exact"},{"name":"canonical Wnt-activated signaling pathway involved in stem cell proliferation","type":"exact"},{"name":"frizzled-1 receptor signaling pathway involved in stem cell proliferation","type":"narrow"}],"termid":"GO:1905474"}


id: PBO:0047703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formin 2","termid":"PBO:0047703"}


id: GO:0048053
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the R1 and R6 pair of photoreceptors in the eye over time, from their formation to the mature structures. R1 and R6 are paired photoreceptors that contribute to the outer rhabdomeres. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"compound eye photoreceptor development","termid":"GO:0042051"},{"relation_name":"part_of","term_name":"R1/R6 cell differentiation","termid":"GO:0048052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"R1/R6 development","termid":"GO:0048053"}


id: FYECO:0000191
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which biotin was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ biotin","termid":"FYECO:0000191"}


id: GO:1904052
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein targeting to vacuole involved in autophagy.","definition_xrefs":["GOC:pad","GOC:PARL","GO_REF:0000058","PMID:22020285","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intracellular protein transport","termid":"GO:0090317"},{"relation_name":"is_a","term_name":"negative regulation of vacuolar transport","termid":"GO:1903336"},{"relation_name":"is_a","term_name":"regulation of protein targeting to vacuole involved in autophagy","termid":"GO:1904051"},{"relation_name":"negatively_regulates","term_name":"protein targeting to vacuole involved in autophagy","termid":"GO:0071211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006605"},{"rel_name":"negatively_regulates","termid":"GO:0006605"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0006605"],"is_obsolete":false,"name":"negative regulation of protein targeting to vacuole involved in autophagy","synonyms":[{"name":"down regulation of protein targeting to vacuole involved in autophagy","type":"exact"},{"name":"down-regulation of protein targeting to vacuole involved in autophagy","type":"exact"},{"name":"downregulation of protein targeting to vacuole involved in autophagy","type":"exact"},{"name":"inhibition of protein targeting to vacuole involved in autophagy","type":"narrow"}],"termid":"GO:1904052"}


id: PBO:0030098
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_glutathione_level_during_vegetative_growth","termid":"PBO:0030098"}


id: MONDO:0003490
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma with squamous differentiation arising from the ampulla of Vater. Signs and symptoms include jaundice, abdominal pain, anorexia, nausea, vomiting, and weight loss.","definition_xrefs":["NCIT:C27417"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrahepatic bile duct squamous cell carcinoma","termid":"MONDO:0006203"},{"relation_name":"is_a","term_name":"carcinoma of the ampulla of vater","termid":"MONDO:0017590"},{"relation_name":"is_a","term_name":"squamous cell carcinoma of the small intestine","termid":"MONDO:0018509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"ampulla of vater squamous cell carcinoma","secondary_identifiers":["MEDGEN:272304","DOID:5527","UMLS:C1332251"],"synonyms":[{"name":"ampulla of Vater squamous cell carcinoma","type":"exact"},{"name":"hepatopancreatic ampulla squamous cell carcinoma","type":"exact"}],"termid":"MONDO:0003490","xrefs":{"Monarch":{"xref_id":"0003490"}}}


id: GO:0110011
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the assembly, disassembly or arrangement of constituent parts of the basement membrane.","definition_xrefs":["PMID:27404358","GOC:ha"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of extracellular matrix organization","termid":"GO:1903053"},{"relation_name":"regulates","term_name":"basement membrane organization","termid":"GO:0071711"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of basement membrane organization","termid":"GO:0110011"}


id: PBO:0046757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exo/endonuclease G","termid":"PBO:0046757"}


id: GO:0042212
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving cresol, a mixture of the aromatic alcohol isoforms o-, p-, and m-cresol, which is obtained from coal tar or petroleum. The isomers are used as disinfectants, textile scouring agents, surfactants and as intermediates in the manufacture of salicylaldehyde, coumarin, and herbicides as well as being a major component of creosote.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"toluene-containing compound metabolic process","termid":"GO:0072490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cresol metabolic process","synonyms":[{"name":"cresol metabolism","type":"exact"},{"name":"hydroxytoluene metabolic process","type":"exact"},{"name":"hydroxytoluene metabolism","type":"exact"}],"termid":"GO:0042212"}


id: FYPO:0005001
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein having high molecular mass due to polyubiquitin conjugation is lower than normal.","definition_xrefs":["PomBase:mah","PMID:10082519"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level during vegetative growth","termid":"FYPO:0001324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased cellular HMW ubiquitin conjugate level","synonyms":[{"name":"decreased cellular HMW ubiquitin conjugate level during mitotic cell cycle","type":"related"},{"name":"decreased cellular HMW ubiquitin conjugate level during vegetative growth","type":"exact"},{"name":"decreased cellular high molecular mass ubiquitin conjugate level during vegetative growth","type":"exact"},{"name":"decreased cellular high molecular weight ubiquitin conjugate level during vegetative growth","type":"exact"},{"name":"reduced cellular HMW ubiquitin conjugate level","type":"exact"}],"termid":"FYPO:0005001"}


id: PBO:0045849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 39","termid":"PBO:0045849"}


id: GO:0006298
data:
  {"annotated_genes":["SJAG_01807","SJAG_02039","SJAG_01832","SJAG_01419","SJAG_02748","SJAG_01620","SJAG_01262","SJAG_01887","SJAG_02261","SJAG_01049","SJAG_04410","SJAG_04190","SJAG_02187","SJAG_02226","SJAG_03722"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65725,71505,72879,73096,73833,74297,74342,75247,75253,107746,117526,118093],"is_not":false,"summary":null,"term":"GO:0006298"},{"annotations":[58096,109563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000710"},{"annotations":[99902],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990516"}]},"cv_name":"biological_process","definition":"A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.","definition_xrefs":["PMID:11687886","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA repair","termid":"GO:0006281"}],"gene_count":15,"genes_by_uniquename":{"SJAG_01049":null,"SJAG_01262":null,"SJAG_01419":null,"SJAG_01620":null,"SJAG_01807":null,"SJAG_01832":null,"SJAG_01887":null,"SJAG_02039":null,"SJAG_02187":null,"SJAG_02226":null,"SJAG_02261":null,"SJAG_02748":null,"SJAG_03722":null,"SJAG_04190":null,"SJAG_04410":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006281","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"mismatch repair","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["GO:0006300","Wikipedia:DNA_mismatch_repair","Reactome:R-HSA-5358508"],"synonyms":[{"name":"MMR","type":"exact"},{"name":"MutS/MutL/MutH pathway","type":"related"},{"name":"long patch mismatch repair system","type":"narrow"},{"name":"mismatch repair, MutL-like pathway","type":"related"}],"termid":"GO:0006298","terms_by_termid":{"GO:0000710":null,"GO:0006298":null,"GO:1990516":null}}


id: PR:P87215
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A thioredoxin-like protein 4A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04484","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitosis protein dim1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16A11.05c","secondary_identifiers":["UniProtKB:P87215"],"synonyms":[{"name":"Spom972h-TXNL4A","type":"exact"}],"termid":"PR:P87215"}


id: MONDO:0001821
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by a recurrent or persistent lack of desire for sexual activity. The lack of sexual desire is not attributable to another psychiatric disorder or to the physiological effects of substance use or a general medical condition.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"psychosexual disorder","termid":"MONDO:0000947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypoactive sexual desire disorder","secondary_identifiers":["UMLS:C0020594","ICD9:302.71","NCIT:C94337","ICD10CM:F52.0","DOID:13868","SCTID:270903007","MEDGEN:43792"],"synonyms":[{"name":"lack or loss of sexual desire","type":"exact"}],"termid":"MONDO:0001821","xrefs":{"Monarch":{"xref_id":"0001821"}}}


id: PBO:0042458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle 73","termid":"PBO:0042458"}


id: PBO:0024843
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"West syndrome","termid":"PBO:0024843"}


id: MONDO:0015131
data:
  {"annotated_genes":["SJAG_05024","SJAG_01732","SJAG_03333","SJAG_04199","SJAG_00677","SJAG_03720","SJAG_02527","SJAG_00874","SJAG_02038"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87140],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008840"},{"annotations":[88536],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012650"},{"annotations":[86820],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044725"},{"annotations":[88833],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011686"},{"annotations":[87382],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009973"},{"annotations":[87635],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014168"},{"annotations":[88192],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014391"},{"annotations":[87655],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010518"},{"annotations":[88642],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010455"}]},"cv_name":"mondo","definition":"A broad classification of inherited disorders presenting at birth that affect both the cell-mediated and humoral aspects of the immune response. Circulating numbers of B lymphocytes, T lymphocytes and NK cells are variable but where present do not function properly. Susceptibility to infection is the primary concern.","definition_xrefs":["NCIT:C27871"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00677":null,"SJAG_00874":null,"SJAG_01732":null,"SJAG_02038":null,"SJAG_02527":null,"SJAG_03333":null,"SJAG_03720":null,"SJAG_04199":null,"SJAG_05024":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"combined immunodeficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:628","GARD:19806","icd11.foundation:1616506198","UMLS:C2711630","ICD9:279.2","MEDGEN:751396","DOID:0111962","NANDO:2100203","Orphanet:101972"],"synonyms":[{"name":"CID","type":"exact"},{"name":"X-linked combined immunodeficiency","type":"narrow"},{"name":"combined T and B cell immunodeficiency","type":"related"},{"name":"combined T cell and B cell immunodeficiency","type":"related"},{"name":"combined immunodeficiency","type":"exact"},{"name":"congenital combined immunodeficiency","type":"exact"}],"termid":"MONDO:0015131","terms_by_termid":{"MONDO:0008840":null,"MONDO:0009973":null,"MONDO:0010455":null,"MONDO:0010518":null,"MONDO:0011686":null,"MONDO:0012650":null,"MONDO:0014168":null,"MONDO:0014391":null,"MONDO:0044725":null},"xrefs":{"Monarch":{"xref_id":"0015131"}}}


id: PBO:0076872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 21, pseudogene","termid":"PBO:0076872"}


id: PATO:0001630
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dispersed","termid":"PATO:0001630"}


id: MONDO:0020141
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete infectious disease with dementia (obsolete MONDO:0020141)","secondary_identifiers":["Orphanet:98542"],"termid":"MONDO:0020141","xrefs":{"Monarch":{"xref_id":"0020141"}}}


id: MONDO:0003195
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, serous adenocarcinoma that arises from the lining of the peritoneum. It affects females. The clinical behavior and pathologic characteristics are similar to the serous adenocarcinoma that arises from the ovary.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peritoneal carcinoma","termid":"MONDO:0002113"},{"relation_name":"is_a","term_name":"serous adenocarcinoma","termid":"MONDO:0005278"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"peritoneal serous adenocarcinoma","secondary_identifiers":["NCIT:C40023","DOID:4901"],"synonyms":[{"name":"peritoneum serous adenocarcinoma","type":"exact"},{"name":"primary peritoneal serous adenocarcinoma","type":"narrow"}],"termid":"MONDO:0003195","xrefs":{"Monarch":{"xref_id":"0003195"}}}


id: PBO:0049931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HHATL antisense RNA 1","termid":"PBO:0049931"}


id: PBO:0075340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorbitol dehydrogenase","termid":"PBO:0075340"}


id: PBO:0117228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane internal ferric-chelate reductase Frp1","termid":"PBO:0117228"}


id: MONDO:0017026
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"interstitial lung disease","termid":"MONDO:0015925"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interstitial lung disease specific to adulthood","secondary_identifiers":["UMLS:C5679743","MEDGEN:1842399","Orphanet:264735"],"synonyms":[{"name":"ILD specific to adulthood","type":"exact"}],"termid":"MONDO:0017026","xrefs":{"Monarch":{"xref_id":"0017026"}}}


id: PBO:0072176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S16 pseudogene 3","termid":"PBO:0072176"}


id: PBO:0056543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MCF.2 cell line derived transforming sequence-like 2","termid":"PBO:0056543"}


id: FYPO:0002321
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of ergosterol measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular sterol level","termid":"FYPO:0002326"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased cellular ergosterol level","synonyms":[{"name":"decreased cellular ergosterol level during mitotic cell cycle","type":"related"},{"name":"decreased cellular ergosterol level during vegetative growth","type":"exact"},{"name":"decreased ergosterol accumulation","type":"related"},{"name":"reduced cellular ergosterol level","type":"exact"}],"termid":"FYPO:0002321"}


id: MONDO:1011119
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hypogonadism that occurs in deer.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypogonadism, non-human animal","termid":"MONDO:1010276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypogonadism, deer","secondary_identifiers":["OMIA:000522-9850"],"termid":"MONDO:1011119","xrefs":{"Monarch":{"xref_id":"1011119"}}}


id: GO:0001907
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process mediated by a symbiont that results in the death of a cell in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:22992735","PMID:23230295","GOC:add","PMID:11123917","PMID:26633512"],"direct_ancestors":[{"relation_name":"is_a","term_name":"killing of cells of another organism","termid":"GO:0031640"},{"relation_name":"is_a","term_name":"biological process involved in interaction with host","termid":"GO:0051701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated killing of host cell","secondary_identifiers":["Reactome:R-HSA-9637698"],"synonyms":[{"name":"killing by symbiont of host cells","type":"exact"},{"name":"pathogenesis","type":"related"}],"termid":"GO:0001907"}


id: GO:0051731
data:
  {"annotated_genes":["SJAG_01791","SJAG_03789","SJAG_00956","SJAG_01979","SJAG_02680"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73210],"is_not":false,"summary":null,"term":"GO:0051731"},{"annotations":[72372,89896],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046404"},{"annotations":[95239],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051736"},{"annotations":[62260],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051730"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NTP + 5'-dephosphopolynucleotide = NDP + 5'-phosphopolynucleotide. The polynucleotide may be DNA or RNA.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"nucleobase-containing compound kinase activity","termid":"GO:0019205"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00956":null,"SJAG_01791":null,"SJAG_01979":null,"SJAG_02680":null,"SJAG_03789":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016301"],"is_obsolete":false,"name":"polynucleotide 5'-hydroxyl-kinase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"5'-dephosphopolynucleotide kinase activity","type":"exact"},{"name":"5'-hydroxyl polynucleotide kinase activity","type":"exact"},{"name":"PNK","type":"related"},{"name":"polynucleotide 5'-hydroxy-kinase activity","type":"exact"},{"name":"polynucleotide 5'-hydroxyl kinase (phosphorylating) activity","type":"exact"},{"name":"polynucleotide kinase activity","type":"broad"}],"termid":"GO:0051731","terms_by_termid":{"GO:0046404":null,"GO:0051730":null,"GO:0051731":null,"GO:0051736":null}}


id: GO:0140012
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A histone reader that recognizes a histone H4 acetylated at lysine 5.","definition_xrefs":["PMID:20709061","PMID:18406326"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H4 reader activity","termid":"GO:0140008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140566"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0030674"}],"interesting_parent_ids":["GO:0030674","GO:0003674","GO:0140566","GO:0060090"],"is_obsolete":false,"name":"histone H4K5ac reader activity","synonyms":[{"name":"H4K5ac modified histone binding","type":"narrow"}],"termid":"GO:0140012"}


id: MONDO:1011904
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"renal disease, non-human animal","termid":"MONDO:1011909"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chronic interstitial nephropathy, non-human animal","secondary_identifiers":["OMIA:000192"],"termid":"MONDO:1011904","xrefs":{"Monarch":{"xref_id":"1011904"}}}


id: GO:0032074
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops or reduces the rate of nuclease activity, the hydrolysis of ester linkages within nucleic acids.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of catalytic activity","termid":"GO:0043086"},{"relation_name":"is_a","term_name":"negative regulation of nucleobase-containing compound metabolic process","termid":"GO:0045934"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of nuclease activity","synonyms":[{"name":"down regulation of nuclease activity","type":"exact"},{"name":"down-regulation of nuclease activity","type":"exact"},{"name":"downregulation of nuclease activity","type":"exact"},{"name":"inhibition of nuclease activity","type":"narrow"},{"name":"nuclease inhibitor","type":"related"}],"termid":"GO:0032074"}


id: GO:0052827
data:
  {"annotated_genes":["SJAG_00063"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110114],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990651"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: myo-inositol pentakisphosphate + H2O = myo-inositol tetrakisphosphate + phosphate.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol phosphate phosphatase activity","termid":"GO:0052745"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00063":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016788","GO:0016787"],"is_obsolete":false,"name":"inositol pentakisphosphate phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0052827","terms_by_termid":{"GO:1990651":null}}


id: MONDO:0022013
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome characterized by spontaneous longitudinal transmural rupture of the esophagus, usually in its distal part.","definition_xrefs":["PMID:27982294"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Boerhaave syndrome","secondary_identifiers":["UMLS:C0238115","MESH:C536571","MEDGEN:65948","SCTID:19995004"],"synonyms":[{"name":"Boerhaave syndrome","type":"exact"},{"name":"Boerhaave's syndrome","type":"related"},{"name":"Boerhave syndrome","type":"related"},{"name":"boerhaave's syndrome","type":"related"},{"name":"spontaneous esophageal perforation","type":"related"},{"name":"spontaneous perforation of esophagus","type":"related"},{"name":"spontaneous perforation of oesophagus","type":"related"},{"name":"spontaneous perforation of the esophagus","type":"related"},{"name":"spontaneous perforation of the oesophagus","type":"related"},{"name":"spontaneous rupture of esophagus","type":"exact"},{"name":"spontaneous rupture of oesophagus","type":"exact"},{"name":"spontaneous rupture of the esophagus","type":"related"},{"name":"spontaneous rupture of the oesophagus","type":"related"}],"termid":"MONDO:0022013","xrefs":{"Monarch":{"xref_id":"0022013"}}}


id: PBO:0039793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1","termid":"PBO:0039793"}


id: PBO:0079727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBTF like 3 (pseudogene)","termid":"PBO:0079727"}


id: PATO:0001587
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A variability of rate which is relatively high.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"variability of rate","termid":"PATO:0001586"},{"relation_name":"is_a","term_name":"increased process quality","termid":"PATO:0002304"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased variability of rate","synonyms":[{"name":"high variability of rate","type":"exact"}],"termid":"PATO:0001587"}


id: MONDO:0002539
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete oligodendroglioma (obsolete MONDO:0002539)","termid":"MONDO:0002539","xrefs":{"Monarch":{"xref_id":"0002539"}}}


id: GO:0090709
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of plant organ formation at a consistent predetermined time point during development.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of development, heterochronic","termid":"GO:0040034"},{"relation_name":"is_a","term_name":"regulation of plant organ formation","termid":"GO:1905428"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of timing of plant organ formation","termid":"GO:0090709"}


id: PBO:0067832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 134","termid":"PBO:0067832"}


id: FYPO:0004498
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which positive regulation of DNA-directed DNA polymerase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"normal regulation of catalytic activity","termid":"FYPO:0004920"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal positive regulation of DNA-directed DNA polymerase activity","synonyms":[{"name":"normal positive regulation of DNA-directed DNA polymerase activity during mitotic cell cycle","type":"exact"},{"name":"normal positive regulation of DNA-directed DNA polymerase activity during vegetative growth","type":"exact"}],"termid":"FYPO:0004498"}


id: GO:1900820
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of orlandin.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"},{"relation_name":"is_a","term_name":"orlandin metabolic process","termid":"GO:1900819"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"orlandin catabolic process","synonyms":[{"name":"orlandin breakdown","type":"exact"},{"name":"orlandin catabolism","type":"exact"},{"name":"orlandin degradation","type":"exact"}],"termid":"GO:1900820"}


id: PBO:0083381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps CCT8/YJL008C, a verified gene encoding a subunit of the cytosolic chaperonin Cct ring complex","termid":"PBO:0083381"}


id: GO:0046271
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of aromatic derivatives of trans-cinnamic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"phenylpropanoid metabolic process","termid":"GO:0009698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"phenylpropanoid catabolic process","synonyms":[{"name":"phenylpropanoid breakdown","type":"exact"},{"name":"phenylpropanoid catabolism","type":"exact"},{"name":"phenylpropanoid degradation","type":"exact"}],"termid":"GO:0046271"}


id: PBO:0056251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mal, T cell differentiation protein 2","termid":"PBO:0056251"}


id: PR:Q9URY0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ribosome biogenesis protein WDR12 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR19855:SF11","OMA:SCHPO02085","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein ytm1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC890.04c","secondary_identifiers":["UniProtKB:Q9URY0"],"synonyms":[{"name":"Spom972h-WDR12","type":"exact"}],"termid":"PR:Q9URY0"}


id: MONDO:0859356
data:
  {"annotated_genes":["SJAG_03865"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87292],"is_not":false,"summary":null,"term":"MONDO:0859356"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type II","termid":"MONDO:0005501"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03865":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"congenital disorder of glycosylation, type IIy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:620200","MEDGEN:1824067","UMLS:C5774294"],"termid":"MONDO:0859356","terms_by_termid":{"MONDO:0859356":null},"xrefs":{"Monarch":{"xref_id":"0859356"}}}


id: GO:0050123
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-acyl-D-mannosamine + NAD+ = N-acyl-D-mannosaminolactone + H+ + NADH.","definition_xrefs":["RHEA:11540","EC:1.1.1.233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"N-acylmannosamine 1-dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R02651","MetaCyc:N-ACYLMANNOSAMINE-1-DEHYDROGENASE-RXN"],"synonyms":[{"name":"N-acetyl-D-mannosamine dehydrogenase activity","type":"related"},{"name":"N-acyl-D-mannosamine dehydrogenase activity","type":"related"},{"name":"N-acyl-D-mannosamine:NAD+ 1-oxidoreductase activity","type":"related"},{"name":"N-acylmannosamine dehydrogenase activity","type":"related"}],"termid":"GO:0050123"}


id: FYPO:0000847
data:
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id: GO:0097097
data:
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id: PBO:0068491
data:
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id: MOD:01186
data:
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id: PBO:0081852
data:
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id: GO:0000278
data:
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id: MOD:00000
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  {"annotated_genes":["SJAG_04067","SJAG_01671","SJAG_04149","SJAG_00096","SJAG_01162","SJAG_02388","SJAG_00733","SJAG_02592","SJAG_00254","SJAG_01626","SJAG_00043","SJAG_04553","SJAG_02972","SJAG_03524","SJAG_02489","SJAG_02450","SJAG_02522","SJAG_04972","SJAG_04953","SJAG_04789","SJAG_00937","SJAG_03632","SJAG_03290","SJAG_00109","SJAG_04551","SJAG_01029","SJAG_01766","SJAG_00784","SJAG_03009","SJAG_05230","SJAG_03861","SJAG_02902","SJAG_02183","SJAG_03914","SJAG_02766","SJAG_02694","SJAG_03012","SJAG_00827","SJAG_02504","SJAG_02498","SJAG_02435","SJAG_04125","SJAG_02980","SJAG_00464","SJAG_00288","SJAG_02260","SJAG_03032","SJAG_02205","SJAG_03671","SJAG_01970","SJAG_04238","SJAG_02827","SJAG_04819","SJAG_02472","SJAG_00331","SJAG_00432","SJAG_01587","SJAG_00318","SJAG_02763","SJAG_01488","SJAG_03641"],"annotation_feature_type":"gene","cv_annotations":{"PSI-MOD":[{"annotations":[82389],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00226"},{"annotations":[82443],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00793"},{"annotations":[82277,82337,82157,82166,82335,82413,82383,82204,82423,82455,82460,82392,82195,82194,82393,82420,82473,82238,82464,82340,82336,82205,82266,82285,82356,82359,82405,82469,82203,82236,82470,82286,82192,82237,82230,82357,82468,82358,82421,82287,82229,82394,82276,82168,82193],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00689"},{"annotations":[82208,82271,82364,82414,82372,82292],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00042"},{"annotations":[82427,82366],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00050"},{"annotations":[82301,82297,82300,82223,82189,82302,82226,82190,82188,82222,82191,82187,82298,82299,82303,82224,82225,82186],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00006"},{"annotations":[82324],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00126"},{"annotations":[82323,82380],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00123"},{"annotations":[82217],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00127"},{"annotations":[82453,82209,82232,82329,82404,82181,82343,82317,82390,82407,82424,82476],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00128"},{"annotations":[121318,121157,121315,121316,82432,82433,121317,121156],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00046"},{"annotations":[82361],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00159"},{"annotations":[121206,120971,121207,121208,121494],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00696"},{"annotations":[82212,82289,82344,82402],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:01154"}]},"cv_name":"PSI-MOD","definition":"Covalent modification of, or a change resulting in an alteration of the measured molecular mass of, a peptide or protein amino acid residue.","definition_xrefs":["PubMed:18688235"],"gene_count":61,"genes_by_uniquename":{"SJAG_00043":null,"SJAG_00096":null,"SJAG_00109":null,"SJAG_00254":null,"SJAG_00288":null,"SJAG_00318":null,"SJAG_00331":null,"SJAG_00432":null,"SJAG_00464":null,"SJAG_00733":null,"SJAG_00784":null,"SJAG_00827":null,"SJAG_00937":null,"SJAG_01029":null,"SJAG_01162":null,"SJAG_01488":null,"SJAG_01587":null,"SJAG_01626":null,"SJAG_01671":null,"SJAG_01766":null,"SJAG_01970":null,"SJAG_02183":null,"SJAG_02205":null,"SJAG_02260":null,"SJAG_02388":null,"SJAG_02435":null,"SJAG_02450":null,"SJAG_02472":null,"SJAG_02489":null,"SJAG_02498":null,"SJAG_02504":null,"SJAG_02522":null,"SJAG_02592":null,"SJAG_02694":null,"SJAG_02763":null,"SJAG_02766":null,"SJAG_02827":null,"SJAG_02902":null,"SJAG_02972":null,"SJAG_02980":null,"SJAG_03009":null,"SJAG_03012":null,"SJAG_03032":null,"SJAG_03290":null,"SJAG_03524":null,"SJAG_03632":null,"SJAG_03641":null,"SJAG_03671":null,"SJAG_03861":null,"SJAG_03914":null,"SJAG_04067":null,"SJAG_04125":null,"SJAG_04149":null,"SJAG_04238":null,"SJAG_04551":null,"SJAG_04553":null,"SJAG_04789":null,"SJAG_04819":null,"SJAG_04953":null,"SJAG_04972":null,"SJAG_05230":null},"genotype_count":0,"is_obsolete":false,"name":"protein modification","references_by_uniquename":{"PMID:26774782":null,"PMID:31150379":null,"PMID:32915139":null,"PMID:33791858":null,"PMID:34198697":null,"PMID:36408920":null},"synonyms":[{"name":"ModRes","type":"exact"}],"termid":"MOD:00000","terms_by_termid":{"GO:0034599":null,"GO:0034605":null,"GO:0036460":null,"GO:0042149":null,"GO:0071475":null,"GO:0120306":null,"GO:1904547":null,"MOD:00006":null,"MOD:00042":null,"MOD:00046":null,"MOD:00050":null,"MOD:00123":null,"MOD:00126":null,"MOD:00127":null,"MOD:00128":null,"MOD:00159":null,"MOD:00226":null,"MOD:00689":null,"MOD:00696":null,"MOD:00793":null,"MOD:01154":null}}


id: FYPO:0002032
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of actin cables is abnormal during mitosis. Actin cables are parallel actin filament bundles nucleated by formin, and are the most common form of actin filament bundles found in yeasts.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cable morphology","termid":"FYPO:0002031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0004803","FYPO:0001985"],"is_obsolete":false,"name":"abnormal actin cable morphology during mitosis","synonyms":[{"name":"abnormal actin cable morphology during mitosis during mitotic cell cycle","type":"related"},{"name":"abnormal actin cable morphology during mitosis during vegetative growth","type":"exact"},{"name":"abnormal actin cable morphology during mitotic M phase","type":"related"},{"name":"abnormal actin cable morphology during mitotic nuclear division","type":"exact"},{"name":"abnormal formin-nucleated actin cable morphology during mitosis","type":"exact"},{"name":"disorganized actin cables during mitosis","type":"exact"}],"termid":"FYPO:0002032"}


id: FYPO:0001009
data:
  {"alleles_by_uniquename":{"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121493,120970],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002998"}]},"cv_name":"fission_yeast_phenotype","definition":"A cytokinesis phenotype observed in the vegetative growth phase of the life cycle in which the assembly and distribution of actin filaments and associated proteins does not occur, resulting in the failure to form an actomyosin contractile ring.","definition_xrefs":["PMID:19713940","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"actomyosin contractile ring absent","termid":"FYPO:0001008"},{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring assembly","termid":"FYPO:0000161"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02592":null},"genotype_count":1,"genotypes_by_uniquename":{"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0000032","FYPO:0001320","FYPO:0004803","FYPO:0000002"],"is_obsolete":false,"name":"abolished actomyosin contractile ring assembly","references_by_uniquename":{"PMID:32915139":null,"PMID:33791858":null},"single_locus_annotated_genes":["SJAG_02592"],"single_locus_genotype_uniquenames":["sty1delta"],"synonyms":[{"name":"abolished actomyosin contractile ring assembly during mitotic cell cycle","type":"related"},{"name":"abolished actomyosin contractile ring assembly during vegetative growth","type":"exact"},{"name":"abolished actomyosin contractile ring formation","type":"related"},{"name":"abolished contractile ring assembly","type":"exact"},{"name":"abolished cytokinetic contractile ring assembly","type":"exact"},{"name":"abolished cytokinetic ring assembly","type":"related"},{"name":"abolished cytokinetic ring formation","type":"related"},{"name":"abolished mitotic contractile ring assembly","type":"exact"},{"name":"actomyosin contractile ring assembly abolished","type":"exact"},{"name":"cytokinesis defects, contractile ring actin, absent","type":"related"}],"termid":"FYPO:0001009","terms_by_termid":{"FYECO:0000248":null,"FYPO:0002998":null,"FYPO_EXT:0000001":null}}


id: PBO:0057133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 216b","termid":"PBO:0057133"}


id: GO:0036278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a deprivation of nitrogen.","definition_xrefs":["PMID:21118960","GOC:al"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter in response to nitrogen starvation (obsolete GO:0036278)","termid":"GO:0036278"}


id: PBO:0079991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 29","termid":"PBO:0079991"}


id: PBO:0030719
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_wall_alpha-glucan_level","termid":"PBO:0030719"}


id: GO:0051273
data:
  {"annotated_genes":["SJAG_04483","SJAG_02222","SJAG_05001","SJAG_04659","SJAG_00610","SJAG_02192","SJAG_01787","SJAG_04509","SJAG_03705","SJAG_01835","SJAG_01255","SJAG_04771","SJAG_04668","SJAG_01290","SJAG_01453","SJAG_05285","SJAG_03646","SJAG_03587","SJAG_01288","SJAG_04462","SJAG_04666","SJAG_03123","SJAG_04073","SJAG_02590","SJAG_02446","SJAG_00218","SJAG_00876","SJAG_01171"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78490,64234,76863],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006078"},{"annotations":[96240],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034413"},{"annotations":[74681],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034412"},{"annotations":[107912,72740,74684,117660,76200,93372,115001,77546],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071970"},{"annotations":[79915,104439],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070880"},{"annotations":[109883,103739,96884,103738],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070879"},{"annotations":[89279,94193],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0140748"},{"annotations":[89662],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0032951"},{"annotations":[119890,69342,92540,119757,107721,94177,107148],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090334"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving beta-glucans, compounds composed of glucose residues linked by beta-D-glucosidic bonds.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucan metabolic process","termid":"GO:0044042"}],"gene_count":28,"genes_by_uniquename":{"SJAG_00218":null,"SJAG_00610":null,"SJAG_00876":null,"SJAG_01171":null,"SJAG_01255":null,"SJAG_01288":null,"SJAG_01290":null,"SJAG_01453":null,"SJAG_01787":null,"SJAG_01835":null,"SJAG_02192":null,"SJAG_02222":null,"SJAG_02446":null,"SJAG_02590":null,"SJAG_03123":null,"SJAG_03587":null,"SJAG_03646":null,"SJAG_03705":null,"SJAG_04073":null,"SJAG_04462":null,"SJAG_04483":null,"SJAG_04509":null,"SJAG_04659":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null,"SJAG_05001":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"beta-glucan metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"beta-glucan metabolism","type":"exact"}],"termid":"GO:0051273","terms_by_termid":{"GO:0006078":null,"GO:0032951":null,"GO:0034412":null,"GO:0034413":null,"GO:0070879":null,"GO:0070880":null,"GO:0071970":null,"GO:0090334":null,"GO:0140748":null}}


id: GO:0060001
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A motor activity that generates movement along a microfilament towards the minus end, driven by ATP hydrolysis. The minus end of an actin filament is the end that does not preferentially add actin monomers.","definition_xrefs":["PMID:10519557","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microfilament motor activity","termid":"GO:0000146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003774"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003774","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"minus-end directed microfilament motor activity","synonyms":[{"name":"minus-end directed actin filament motor activity","type":"related"},{"name":"minus-end directed actin-filament motor activity","type":"exact"},{"name":"pointed-end directed actin-filament motor activity","type":"exact"}],"termid":"GO:0060001"}


id: GO:0120557
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2E,6E)-farnesyl diphosphate + H2O = (2E,6E)-farnesyl phosphate + phosphate + H+.","definition_xrefs":["RHEA:48128","PMID:19168029"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyprenyl diphosphate phosphatase activity","termid":"GO:0120556"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"farnesyl diphosphatase activity","secondary_identifiers":["MetaCyc:RXN-11776"],"termid":"GO:0120557"}


id: PBO:0052814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 80","termid":"PBO:0052814"}


id: FYPO:0004980
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the equatorial microtubule organizing center is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to microtubule cytoskeleton during vegetative growth","termid":"FYPO:0000933"},{"relation_name":"is_a","term_name":"abnormal protein localization to cortical microtubule cytoskeleton during vegetative growth","termid":"FYPO:0000935"},{"relation_name":"is_a","term_name":"decreased protein localization to cell division site","termid":"FYPO:0002869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"decreased protein localization to eMTOC during vegetative growth","synonyms":[{"name":"decreased protein localisation to eMTOC during vegetative growth","type":"exact"},{"name":"decreased protein localization to eMTOC during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to equatorial microtubule organizing center during vegetative growth","type":"exact"},{"name":"decreased protein localization to mitotic eMTOC","type":"related"},{"name":"reduced protein localization to eMTOC during vegetative growth","type":"exact"}],"termid":"FYPO:0004980"}


id: MONDO:0017087
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neural tube defect","termid":"MONDO:0018075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0020022"}],"interesting_parent_ids":["MONDO:0020022"],"is_obsolete":false,"name":"neurenteric cyst","secondary_identifiers":["GARD:20975","icd11.foundation:172158971","MEDGEN:14343","Orphanet:268865","UMLS:C0027806"],"termid":"MONDO:0017087","xrefs":{"Monarch":{"xref_id":"0017087"}}}


id: PBO:0081134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZFP28 zinc finger protein","termid":"PBO:0081134"}


id: PBO:0002264
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.6.3.6","termid":"PBO:0002264"}


id: PBO:0083770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential, non-ATPase regulatory subunit of the 26S proteasome lid; required for the assembly and activity of the 26S proteasome; the human homolog (S9 protein) partially rescues Rpn6p depletion; protein abundance increases in response to DNA replication stress","termid":"PBO:0083770"}


id: PBO:0055649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3089","termid":"PBO:0055649"}


id: GO:0003822
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete MHC-interacting protein (obsolete GO:0003822)","synonyms":[{"name":"MHC-interacting protein","type":"exact"}],"termid":"GO:0003822"}


id: PBO:0068658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 39, pseudogene","termid":"PBO:0068658"}


id: PATO:0001700
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A sleep pattern which has irregular start and/or end times.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sleep pattern","termid":"PATO:0000062"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"irregular sleep pattern","termid":"PATO:0001700"}


id: GO:1904504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of lipophagy.","definition_xrefs":["GOC:autophagy","PMID:25383539","GOC:dph","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of macroautophagy","termid":"GO:0016239"},{"relation_name":"is_a","term_name":"regulation of lipophagy","termid":"GO:1904502"},{"relation_name":"positively_regulates","term_name":"lipophagy","termid":"GO:0061724"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006914"},{"rel_name":"positively_regulates","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006914"],"is_obsolete":false,"name":"positive regulation of lipophagy","synonyms":[{"name":"activation of lipophagy","type":"narrow"},{"name":"up regulation of lipophagy","type":"exact"},{"name":"up-regulation of lipophagy","type":"exact"},{"name":"upregulation of lipophagy","type":"exact"}],"termid":"GO:1904504"}


id: PBO:0084049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase-activating protein; negatively regulates RAS by converting it from the GTP- to the GDP-bound inactive form, required for reducing cAMP levels under nutrient limiting conditions; IRA2 has a paralog, IRA1, that arose from the whole genome duplication; defects in human homolog NF1 are associated with neurofibromatosis","termid":"PBO:0084049"}


id: GO:0019379
data:
  {"annotated_genes":["SJAG_04060","SJAG_04953"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[81617,101792],"is_not":false,"summary":null,"term":"GO:0019379"}]},"cv_name":"biological_process","definition":"The pathway by which inorganic sulfate is processed and incorporated into sulfated compounds, where the phosphoadenylyl sulfate reduction step is catalyzed by the enzyme phosphoadenylyl-sulfate reductase (thioredoxin) (EC:1.8.4.8).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfate assimilation","termid":"GO:0000103"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04060":null,"SJAG_04953":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:SO4ASSIM-PWY"],"synonyms":[{"name":"sulphate assimilation, phosphoadenylyl sulphate reduction by a phosphoadenylyl-sulphate reductase (thioredoxin)","type":"exact"}],"termid":"GO:0019379","terms_by_termid":{"GO:0019379":null}}


id: PBO:0040622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BANF1 pseudogene 1","termid":"PBO:0040622"}


id: PBO:0011085
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein substrate Km, thiamine Km 6 uM","termid":"PBO:0011085"}


id: PBO:0028540
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-secondary_cell_septum_absent_from_cell_during_vegetative_growth","termid":"PBO:0028540"}


id: PBO:0066937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 239","termid":"PBO:0066937"}


id: PBO:0084922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Monocarboxylate/proton symporter of the plasma membrane; transport activity is dependent on the pH gradient across the membrane; mediates high-affinity uptake of carbon sources lactate, pyuvate, and acetate, and also of the micronutrient selenite, whose structure mimics that of monocarboxylates; expression and localization are tightly regulated, with transcription repression, mRNA degradation, and protein endocytosis and degradation all occurring in the presence of glucose","termid":"PBO:0084922"}


id: MONDO:0005189
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Carotid stenosis is a narrowing or constriction of the inner surface (lumen) of the carotid artery, usually caused by atherosclerosis. The internal carotid artery supplies the brain. Plaque often builds up at that division, and causes a narrowing (stenosis). Pieces of plaque can break off and block the small arteries above in the brain, which causes a stroke. Plaque can also build up at the origin of the carotid artery at the aorta.","definition_xrefs":["EFO:0002615"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebrovascular disorder","termid":"MONDO:0011057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"internal carotid artery stenosis","secondary_identifiers":["MEDGEN:87405","UMLS:C0340569","SCTID:233964008","ICD9:433.10","Wikipedia:Carotid_artery_stenosis"],"termid":"MONDO:0005189","xrefs":{"Monarch":{"xref_id":"0005189"}}}


id: PBO:0051916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit beta 1 pseudogene 1","termid":"PBO:0051916"}


id: PBO:0114109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Set1C complex WDC repeat subunit Swd1","termid":"PBO:0114109"}


id: GO:0043841
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (S)-lactate + GTP = 2-phospho-(S)-lactate + GDP.","definition_xrefs":["PMID:11535063"],"gene_count":0,"genotype_count":0,"name":"obsolete (S)-lactate 2-kinase activity (obsolete GO:0043841)","synonyms":[{"name":"lactate 2-kinase activity","type":"exact"}],"termid":"GO:0043841"}


id: PBO:0055633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3072","termid":"PBO:0055633"}


id: PBO:0039236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-aminolevulinate synthase 1","termid":"PBO:0039236"}


id: GO:0047703
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-nitropropanoate + NADP+ = 3-nitroacrylate + H+ + NADPH.","definition_xrefs":["RHEA:23892","EC:1.3.1.16"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"beta-nitroacrylate reductase activity","secondary_identifiers":["MetaCyc:BETA-NITROACRYLATE-REDUCTASE-RXN","KEGG_REACTION:R03900"],"synonyms":[{"name":"3-nitropropanoate:NADP+ oxidoreductase activity","type":"related"},{"name":"b-nitroacrylate reductase activity","type":"exact"}],"termid":"GO:0047703"}


id: PBO:0080057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP27X divergent transcript","termid":"PBO:0080057"}


id: GO:0046621
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of growth of an organ of an organism.","definition_xrefs":["GOC:tb","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organ growth","termid":"GO:0046620"},{"relation_name":"is_a","term_name":"negative regulation of developmental growth","termid":"GO:0048640"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"negatively_regulates","term_name":"organ growth","termid":"GO:0035265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of organ growth","termid":"GO:0046621"}


id: GO:0035720
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of large protein complexes along microtubules from the cell body toward the tip of a cilium (also called flagellum), mediated by motor proteins.","definition_xrefs":["GOC:BHF","GOC:cilia","PMID:17895364"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intraciliary transport","termid":"GO:0042073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"intraciliary anterograde transport","synonyms":[{"name":"intraflagellar anterograde transport","type":"exact"}],"termid":"GO:0035720"}


id: PBO:0040062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein 2/3 complex inhibitor","termid":"PBO:0040062"}


id: GO:0030526
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The heterodimeric receptor for granulocyte macrophage colony-stimulating factor.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"granulocyte macrophage colony-stimulating factor receptor complex","synonyms":[{"name":"GM-CSF receptor complex","type":"exact"},{"name":"granulocyte macrophage colony stimulating factor receptor complex","type":"exact"}],"termid":"GO:0030526"}


id: PBO:0065359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoserine aminotransferase 1","termid":"PBO:0065359"}


id: GO:0018954
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving pentaerythritol tetranitrate, C(CH2-O-NO2)4, a substance produced for use as an explosive and a vasodilator.","definition_xrefs":["UM-BBD_pathwayID:petn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic metabolic process","termid":"GO:0006805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pentaerythritol tetranitrate metabolic process","synonyms":[{"name":"pentaerythritol tetranitrate metabolism","type":"exact"}],"termid":"GO:0018954"}


id: PBO:0080787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XK related, Y-linked pseudogene 7","termid":"PBO:0080787"}


id: GO:0140140
data:
  {"annotated_genes":["SJAG_00760"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[116990],"is_not":false,"summary":null,"term":"GO:0140140"}]},"cv_name":"biological_process","definition":"The process in which a guanine nucleotide is transported across a mitochondrial membrane, into or out of the mitochondrion.","definition_xrefs":["GOC:vw","PMID:14998997"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanine transmembrane transport","termid":"GO:1903716"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00760":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"mitochondrial guanine nucleotide transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140140","terms_by_termid":{"GO:0140140":null}}


id: PBO:0083614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dynamin-related GTPase involved in mitochondrial organization; required for mitochondrial fission and inheritance; self assembles on the cytoplasmic face of mitochondrial tubules at sites where division will occur; participates in endocytosis and regulates peroxisome fission along with Vps1p; mutants in the human ortholog DNM1L, which mediates mitochondrial fission, peroxisomal division, autophagy, and mitophagy, are associated with slowly progressive infantile encephalopathy","termid":"PBO:0083614"}


id: PBO:0042956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 10","termid":"PBO:0042956"}


id: PBO:0060946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NFIA antisense RNA 2","termid":"PBO:0060946"}


id: GO:0046417
data:
  {"annotated_genes":["SJAG_00337","SJAG_03580","SJAG_00224","SJAG_03485","SJAG_00518"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103046,115930,96365,91611,92870],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009423"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving chorismate, the anion of (3R-trans)-3-((1-carboxyethenyl)oxy)-4-hydroxy-1,5-cyclohexadiene-1-carboxylic acid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid metabolic process","termid":"GO:0043648"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00224":null,"SJAG_00337":null,"SJAG_00518":null,"SJAG_03485":null,"SJAG_03580":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"chorismate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"chorismate metabolism","type":"exact"}],"termid":"GO:0046417","terms_by_termid":{"GO:0009423":null}}


id: PBO:0058088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4305","termid":"PBO:0058088"}


id: GO:0002152
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which bile acids are covalently linked to taurine or glycine.","definition_xrefs":["PMID:1094911","PMID:708413"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bile acid metabolic process","termid":"GO:0008206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"bile acid conjugation","termid":"GO:0002152"}


id: PBO:0060846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEGR1 intronic transcript 1","termid":"PBO:0060846"}


id: PR:000027610
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mediator of replication checkpoint protein 1 phosphorylated 1 in Schizosaccharomyces pombe. Phosphorylated at least on the last Thr residue within the TQxSQx(6)TQ motif. Phosphorylated by Rad3 and Tel1. UniProtKB:Q9P7T4-1, Thr-645, MOD:00047.","definition_xrefs":["PMID:14585996","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mediator of replication checkpoint protein 1","termid":"PR:000027605"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator of replication checkpoint protein 1 phosphorylated 1 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC694.06c","synonyms":[{"name":"Spom-mrc1/Phos:1","type":"exact"}],"termid":"PR:000027610"}


id: MONDO:0020177
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pigmented palpebral tumor (obsolete MONDO:0020177)","secondary_identifiers":["Orphanet:98586"],"synonyms":[{"name":"pigmented eyelid tumor","type":"exact"},{"name":"pigmented eyelid tumour","type":"exact"},{"name":"pigmented palpebral neoplasm","type":"exact"}],"termid":"MONDO:0020177","xrefs":{"Monarch":{"xref_id":"0020177"}}}


id: PBO:0082176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP-ribosylation factor (ARF) GTPase activating protein (GAP) effector; involved in the secretory and endocytic pathways; contains C2C2H2 cysteine/histidine motif","termid":"PBO:0082176"}


id: PBO:0082469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Calmodulin-binding actin-associated protein; roles in endocytic membrane tabulation and constriction, and exocytosis; N-BAR domain protein that interacts with Rvs161p to regulate actin cytoskeleton, endocytosis, and viability following starvation or osmotic stress; recruited to bud tips by Gyl1p and Gyp5p during polarized growth; homolog of mammalian amphiphysin; necessary for efficient trafficking of CoQ6 to mitochondria","termid":"PBO:0082469"}


id: PBO:0028978
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_sodium_hypochlorite","termid":"PBO:0028978"}


id: PR:O59725
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC3E7.05c gene.","definition_xrefs":["UniProtKB:O59725","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MICOS complex subunit mic60 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3E7.05c","synonyms":[{"name":"Mitofilin (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPBC3E7.05c","type":"exact"}],"termid":"PR:O59725"}


id: GO:0045484
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + L-lysine = L-glutamate + allysine.","definition_xrefs":["RHEA:21200","EC:2.6.1.36"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016769","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"L-lysine 6-transaminase activity","secondary_identifiers":["KEGG_REACTION:R00457","MetaCyc:L-LYSINE-AMINOTRANSFERASE-RXN"],"synonyms":[{"name":"L-lysine aminotransferase activity","type":"related"},{"name":"L-lysine transaminase activity","type":"related"},{"name":"L-lysine-alpha-ketoglutarate 6-aminotransferase activity","type":"related"},{"name":"L-lysine-alpha-ketoglutarate aminotransferase activity","type":"related"},{"name":"L-lysine:2-oxoglutarate 6-aminotransferase activity","type":"related"},{"name":"lysine 6-aminotransferase activity","type":"exact"},{"name":"lysine epsilon-aminotransferase activity","type":"related"},{"name":"lysine epsilon-transaminase activity","type":"related"},{"name":"lysine:2-ketoglutarate 6-aminotransferase activity","type":"related"}],"termid":"GO:0045484"}


id: PATO:0002295
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A surface feature shape inhering in a surface by virtue of the bearer's being divided by ridge-like structures into a number of small, irregular spaces.","definition_xrefs":["Book:Book"],"direct_ancestors":[{"relation_name":"is_a","term_name":"surface feature shape","termid":"PATO:0001925"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"areolate","termid":"PATO:0002295"}


id: GO:0035978
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H2A by the addition of an phosphate group to a serine residue at position 139 of the histone.","definition_xrefs":["PMID:16061642","GOC:yaf"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H2A-S139 phosphorylation (obsolete GO:0035978)","synonyms":[{"name":"histone H2A.x phosphorylation at S139","type":"narrow"}],"termid":"GO:0035978"}


id: PBO:0047856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(1)(q44)","termid":"PBO:0047856"}


id: GO:0097410
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a hippocampal interneuron.","definition_xrefs":["GOC:jc","PMID:19655320","CL:1001569"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebral cortex neuron differentiation","termid":"GO:0021895"},{"relation_name":"part_of","term_name":"hippocampus development","termid":"GO:0021766"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hippocampal interneuron differentiation","termid":"GO:0097410"}


id: GO:0060192
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of hydrolase activity","termid":"GO:0051346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of lipase activity","termid":"GO:0060192"}


id: PBO:0061258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"notch 2 N-terminal like A","termid":"PBO:0061258"}


id: MONDO:0009893
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"postaxial polydactyly type A","termid":"MONDO:0019673"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polydactyly, postaxial, type A5","secondary_identifiers":["MEDGEN:763575","OMIM:263450","UMLS:C3550661","GARD:18172"],"synonyms":[{"name":"PAPA5","type":"related"},{"name":"polydactyly, postaxial, type A5","type":"exact"}],"termid":"MONDO:0009893","xrefs":{"Monarch":{"xref_id":"0009893"}}}


id: GO:0051635
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a component on the surface of a bacterial cell.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete bacterial cell surface binding (obsolete GO:0051635)","synonyms":[{"name":"bacterial binding","type":"exact"},{"name":"bacterial cell surface binding","type":"exact"},{"name":"bacterium binding","type":"exact"},{"name":"bacterium cell surface binding","type":"exact"},{"name":"binding to bacterium","type":"exact"}],"termid":"GO:0051635"}


id: PBO:0069437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 702, pseudogene","termid":"PBO:0069437"}


id: MONDO:0005891
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease of herbivorous mammals, particularly cattle and sheep, caused by stomach worms of the genus ostertagia.","definition_xrefs":["MESH:D010029"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trichostrongyloidiasis","termid":"MONDO:0005994"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ostertagiasis","secondary_identifiers":["EFO:0007414","MEDGEN:18224","DOID:3985","UMLS:C0029471"],"termid":"MONDO:0005891","xrefs":{"Monarch":{"xref_id":"0005891"}}}


id: PBO:0064284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology domain containing O1","termid":"PBO:0064284"}


id: GO:0004071
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L-aspartate + NH3 = AMP + diphosphate + L-asparagine.","definition_xrefs":["EC:6.3.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ammonia ligase activity","termid":"GO:0016211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016874","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"aspartate-ammonia ligase activity","secondary_identifiers":["MetaCyc:ASNSYNA-RXN","RHEA:11372"],"synonyms":[{"name":"L-asparagine synthetase activity","type":"related"},{"name":"L-aspartate:ammonia ligase (AMP-forming)","type":"related"},{"name":"asparagine synthetase activity","type":"related"}],"termid":"GO:0004071"}


id: PBO:0062504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily G member 5","termid":"PBO:0062504"}


id: GO:0060228
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of phosphatidylcholine-sterol O-acyltransferase.","definition_xrefs":["PMID:4335615","GOC:dph","GOC:tb","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140677","GO:0030234","GO:0003674","GO:0098772"],"is_obsolete":false,"name":"phosphatidylcholine-sterol O-acyltransferase activator activity","synonyms":[{"name":"LCAT activator activity","type":"narrow"}],"termid":"GO:0060228"}


id: GO:1905481
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any cytoplasmic sequestering of protein that is involved in mitotic DNA replication checkpoint.","definition_xrefs":["GO_REF:0000060","GOC:TermGenie","PMID:10523629"],"gene_count":0,"genotype_count":0,"name":"obsolete cytoplasmic sequestering of protein involved in mitotic DNA replication checkpoint (obsolete GO:1905481)","termid":"GO:1905481"}


id: MONDO:0957284
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nemaline myopathy","termid":"MONDO:0018958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"nemaline myopathy 5C, autosomal dominant","secondary_identifiers":["MEDGEN:1841185","OMIM:620389","UMLS:C5830549","DOID:0081375"],"termid":"MONDO:0957284","xrefs":{"Monarch":{"xref_id":"0957284"}}}


id: PBO:0061816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OFD1 pseudogene 6 Y-linked","termid":"PBO:0061816"}


id: GO:0034444
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of lipoprotein oxidation, occurring in the blood plasma.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular component organization","termid":"GO:0051128"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"plasma lipoprotein particle oxidation","termid":"GO:0034441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of plasma lipoprotein oxidation","synonyms":[{"name":"regulation of plasma lipoprotein particle oxidation","type":"related"}],"termid":"GO:0034444"}


id: MONDO:0700245
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive epidermolytic ichthyosis","termid":"MONDO:0044742"},{"relation_name":"is_a","term_name":"epidermolytic hyperkeratosis 2","termid":"MONDO:0958184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005093"],"is_obsolete":false,"name":"epidermolytic hyperkeratosis 2B, autosomal recessive","secondary_identifiers":["UMLS:C5882753","MEDGEN:1845041","OMIM:620707"],"termid":"MONDO:0700245","xrefs":{"Monarch":{"xref_id":"0700245"}}}


id: MONDO:0017521
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hyperphalangy","termid":"MONDO:0017455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"hyperphalangy, unilateral","secondary_identifiers":["icd11.foundation:1023621052","Orphanet:295140"],"synonyms":[{"name":"hyperphalangy in digits 2-5","type":"exact"},{"name":"supernumerary phalanges, unilateral","type":"exact"},{"name":"supernumerary phalanx, unilateral","type":"exact"}],"termid":"MONDO:0017521","xrefs":{"Monarch":{"xref_id":"0017521"}}}


id: GO:0004322
data:
  {"annotated_genes":["SJAG_03862","SJAG_04677"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[59208,79407],"is_not":false,"summary":null,"term":"GO:0004322"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 4 Fe2+ + 4 H+ + O2 = 4 Fe3+ + 2 H2O.","definition_xrefs":["RHEA:11148"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on metal ions, oxygen as acceptor","termid":"GO:0016724"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03862":null,"SJAG_04677":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"ferroxidase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-1562603","Reactome:R-HSA-917933","Reactome:R-HSA-5691107","EC:1.16.3.1","MetaCyc:RXN0-1483","Reactome:R-HSA-1562604","Reactome:R-HSA-917891","Reactome:R-HSA-5621402","Reactome:R-HSA-1562626"],"synonyms":[{"name":"Fe(II):oxygen oxidoreductase activity","type":"related"},{"name":"HEPH","type":"narrow"},{"name":"caeruloplasmin","type":"narrow"},{"name":"ceruloplasmin","type":"narrow"},{"name":"ferro:O2 oxidoreductase activity","type":"related"},{"name":"ferroxidase I","type":"related"},{"name":"ferroxidase, iron II:oxygen oxidoreductase activity","type":"related"},{"name":"hephaestin","type":"narrow"},{"name":"iron(II): oxygen oxidoreductase activity","type":"related"},{"name":"multicopper ferroxidase iron transport mediator activity","type":"narrow"}],"termid":"GO:0004322","terms_by_termid":{"GO:0004322":null}}


id: PBO:0088801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab GAP","termid":"PBO:0088801"}


id: MOD:02032
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod N-linked glycosylation, dHex(2) Hex(4) HexNAc(5)","definition_xrefs":["PubMed:33135055","Unimod:1785"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"},{"relation_name":"is_a","term_name":"complex glycosylation","termid":"MOD:00725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"dHex2Hex4HexNAc5 N4-glycosylated asparagine","synonyms":[{"name":"dHex(2) Hex(4) HexNAc(5)","type":"related"}],"termid":"MOD:02032"}


id: MONDO:0000969
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign adipose tissue neoplasm of the pleural cavity. It may be purely intra-thoracic or extend to the chest wall.","definition_xrefs":["NCIT:C6644"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipoma","termid":"MONDO:0005106"},{"relation_name":"is_a","term_name":"benign neoplasm of pleura","termid":"MONDO:0021457"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleural lipoma","secondary_identifiers":["UMLS:C1335434","DOID:10195","MEDGEN:233862","SCTID:2460001000004103"],"synonyms":[{"name":"lipoma of pleura","type":"exact"},{"name":"lipoma of the pleura","type":"exact"},{"name":"pleura lipoma","type":"exact"},{"name":"pleural lipoma","type":"exact"}],"termid":"MONDO:0000969","xrefs":{"Monarch":{"xref_id":"0000969"}}}


id: GO:0106324
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (4S)-limonene + NADH + H+ + O2 = NAD+ + H2O + (4S)-limonene-1,2-epoxide.","definition_xrefs":["RHEA:26089"],"gene_count":0,"genotype_count":0,"name":"obsolete (S)-limonene 1,2-monooxygenase NADH activity (obsolete GO:0106324)","termid":"GO:0106324"}


id: MONDO:1011812
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cancer or benign tumor, non-human animal","termid":"MONDO:1011305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ocular squamous cell carcinoma, non-human animal","secondary_identifiers":["OMIA:000735"],"termid":"MONDO:1011812","xrefs":{"Monarch":{"xref_id":"1011812"}}}


id: MONDO:0009647
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mucopolysaccharidosis type 4","termid":"MONDO:0018938"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005066","MONDO:0002561"],"is_obsolete":false,"name":"Morquio syndrome C","secondary_identifiers":["UMLS:C2931140","GARD:7059","MESH:C536247","MEDGEN:443986","OMIM:252300"],"synonyms":[{"name":"Morquio syndrome C","type":"exact"},{"name":"Morquio syndrome type C","type":"exact"},{"name":"Morquio syndrome, Nonkeratosulfate-Excreting type","type":"related"}],"termid":"MONDO:0009647","xrefs":{"Monarch":{"xref_id":"0009647"}}}


id: PBO:0050828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxylysine kinase","termid":"PBO:0050828"}


id: FYPO:0001223
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has two nuclei and more than one septum.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"binucleate vegetative cell","termid":"FYPO:0001222"},{"relation_name":"is_a","term_name":"binucleate vegetative cell","termid":"FYPO:0001222"},{"relation_name":"is_a","term_name":"multinucleate multiseptate vegetative cell","termid":"FYPO:0001252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000631","FYPO:0001320","FYPO:0000032"],"is_obsolete":false,"name":"binucleate multiseptate vegetative cell","synonyms":[{"name":"binucleate multiseptate cell during mitotic cell cycle","type":"related"},{"name":"binucleate multiseptate cell during vegetative growth","type":"exact"}],"termid":"FYPO:0001223"}


id: GO:0042957
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of dextrin, any one, or the mixture, of the intermediate polysaccharides formed during the hydrolysis of starch, which are dextrorotatory, soluble in water, and precipitable in alcohol, from one side of a membrane to the other.","definition_xrefs":["GOC:vk","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide transmembrane transporter activity","termid":"GO:0015159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"dextrin transmembrane transporter activity","termid":"GO:0042957"}


id: MONDO:0012603
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A dystonia characterized by autosomal dominant inheritance of recurrent brief involuntary hyperkinesias triggered by sudden movements that has material basis in variation in the chromosome region 16q13-q22.1.","definition_xrefs":["DOID:0090054"],"direct_ancestors":[{"relation_name":"is_a","term_name":"episodic kinesigenic dyskinesia","termid":"MONDO:0044202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0003441"}],"interesting_parent_ids":["MONDO:0003441"],"is_obsolete":false,"name":"episodic kinesigenic dyskinesia 2","secondary_identifiers":["GARD:15506","MESH:C567026","NANDO:1200532","OMIM:611031","UMLS:C1970238","MEDGEN:410022"],"synonyms":[{"name":"EKD2","type":"related"},{"name":"dystonia 19","type":"related"},{"name":"episodic kinesigenic dyskinesia 2","type":"exact"},{"name":"episodic kinesigenic dyskinesia type 2","type":"exact"}],"termid":"MONDO:0012603","xrefs":{"Monarch":{"xref_id":"0012603"}}}


id: GO:1900562
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of dehydroaustinol.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"},{"relation_name":"is_a","term_name":"dehydroaustinol metabolic process","termid":"GO:1900561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"dehydroaustinol catabolic process","synonyms":[{"name":"dehydroaustinol breakdown","type":"exact"},{"name":"dehydroaustinol catabolism","type":"exact"},{"name":"dehydroaustinol degradation","type":"exact"}],"termid":"GO:1900562"}


id: GO:0098593
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cup shaped specialization of the cytoskeleton that forms a thin layer located just below the apical mass of mature mucin secretory granules in the cytoplasm of goblet cells of the intestinal epithelium. It consists of an orderly network of intermediate filaments and microtubules. Microtubules are arranged vertically, like barrel staves, along the inner aspect of the theta. Intermediate filaments form two networks: an inner, basketlike network and an outer series of circumferential bundles resembling the hoops of a barrel.","definition_xrefs":["PMID:6541604"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membraneless organelle","termid":"GO:0043232"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"},{"relation_name":"part_of","term_name":"cytoskeleton","termid":"GO:0005856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"goblet cell theca","termid":"GO:0098593"}


id: MONDO:1010922
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Myotonic dystrophy that occurs in Japanese quail.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"},{"relation_name":"is_a","term_name":"myotonic dystrophy, non-human animal","termid":"MONDO:1010198"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myotonic dystrophy, Japanese quail","secondary_identifiers":["OMIA:000699-93934"],"termid":"MONDO:1010922","xrefs":{"Monarch":{"xref_id":"1010922"}}}


id: PBO:0113126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential subunit of Dam1 complex (aka DASH complex); complex couples kinetochores to force produced by MT depolymerization thereby aiding in chromosome segregation; also localized to nuclear side of spindle pole body; SPC19 mRNA level is reduced when downstream gene RAV2 is deleted","termid":"PBO:0113126"}


id: GO:0048008
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to a platelet-derived growth factor receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:ceb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor protein tyrosine kinase signaling pathway","termid":"GO:0007169"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"platelet-derived growth factor receptor signaling pathway","synonyms":[{"name":"PDGF receptor signaling pathway","type":"exact"},{"name":"PDGF receptor signalling pathway","type":"exact"},{"name":"PDGFR signaling pathway","type":"exact"}],"termid":"GO:0048008"}


id: PBO:0073832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 7 member 8","termid":"PBO:0073832"}


id: PBO:0072204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S18 pseudogene 3","termid":"PBO:0072204"}


id: GO:0019579
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of aldaric acid, any dicarboxylic acid formed by oxidation of by the terminal groups of an aldose to carboxyl group.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldaric acid metabolic process","termid":"GO:0019577"},{"relation_name":"is_a","term_name":"dicarboxylic acid catabolic process","termid":"GO:0043649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"aldaric acid catabolic process","synonyms":[{"name":"aldaric acid breakdown","type":"exact"},{"name":"aldaric acid catabolism","type":"exact"},{"name":"aldaric acid degradation","type":"exact"}],"termid":"GO:0019579"}


id: MOD:00260
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-threonine residue and the 5'-end of DNA through a phosphodiester bond to form O-(phospho-5'-DNA)-L-threonine.","definition_xrefs":["PubMed:3081736","RESID:AA0255"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxyribonucleic acid linked residue","termid":"MOD:00750"},{"relation_name":"is_a","term_name":"modified L-threonine residue","termid":"MOD:00917"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-(phospho-5'-DNA)-L-threonine","synonyms":[{"name":"(S)-2-amino-3-(5'-deoxyribonucleic acid phosphonoxy)butanoic acid","type":"exact"},{"name":"O-(phospho-5'-DNA)-L-threonine","type":"exact"},{"name":"O3-(phospho-5'-DNA)-L-threonine","type":"exact"},{"name":"O3-L-threonine 5'-DNA phosphodiester","type":"exact"}],"termid":"MOD:00260"}


id: GO:0070400
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a D-alanyl ester of teichoic acid. Alanylation of teichoic acids modulates the properties of the bacterial cell wall and modulates the inflammatory properties of the teichoic acid.","definition_xrefs":["PMID:14665680","GOC:add","PMID:16020688"],"direct_ancestors":[{"relation_name":"is_a","term_name":"teichoic acid biosynthetic process","termid":"GO:0019350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0044085","GO:0044281","GO:0008150","GO:0071554"],"is_obsolete":false,"name":"teichoic acid D-alanylation","synonyms":[{"name":"teichoic acid alanylation","type":"exact"}],"termid":"GO:0070400"}


id: PR:Q9Y7K2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein kinase mTOR that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02637","PANTHER:PTHR11139:SF9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol 3-kinase tor2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC216.07c","secondary_identifiers":["UniProtKB:Q9Y7K2"],"synonyms":[{"name":"PI3-kinase tor2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PI3K tor2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PtdIns-3-kinase tor2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-MTOR","type":"exact"}],"termid":"PR:Q9Y7K2"}


id: PBO:0044018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"casein kinase 1 gamma 2","termid":"PBO:0044018"}


id: MONDO:0011259
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A retinitis pigmentosa that has material basis in variation in the chromosome region 16p12.3-p12.1.","definition_xrefs":["DOID:0110400","PMID:9545639"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736","MONDO:0005328"],"is_obsolete":false,"name":"retinitis pigmentosa 22","secondary_identifiers":["UMLS:C3887981","ICD10CM:H35.5","GARD:10393","MEDGEN:854689","OMIM:602594"],"synonyms":[{"name":"RP 22","type":"related"},{"name":"RP22","type":"exact"},{"name":"retinitis pigmentosa 22","type":"exact"},{"name":"retinitis pigmentosa type 22","type":"exact"}],"termid":"MONDO:0011259","xrefs":{"Monarch":{"xref_id":"0011259"}}}


id: GO:0075226
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The physiological, developmental and morphological changes that occur in an encysted zoospore, that germinates by developing a germ tube that may penetrate the host directly or indirectly through an appressorium. An encysted zoospore is a zoospore which has shed its flagellum and whose membrane has fused to form a walled cyst. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spore germination","termid":"GO:0009847"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"encysted zoospore germination","synonyms":[{"name":"encysted zoospore germination on or near host","type":"exact"}],"termid":"GO:0075226"}


id: GO:0140964
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of auxin within a cell.","definition_xrefs":["PMID:22314799","PMID:19506555"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular chemical homeostasis","termid":"GO:0055082"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intracellular auxin homeostasis","synonyms":[{"name":"auxin homeostasis","type":"broad"},{"name":"cellular auxin homeostasis","type":"exact"}],"termid":"GO:0140964"}


id: PR:O74735
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- atx1 gene.","definition_xrefs":["UniProtKB:O74735","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metal homeostasis factor atx1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1709.10c","synonyms":[{"name":"Spom972h-atx1","type":"exact"}],"termid":"PR:O74735"}


id: MONDO:0000331
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease caused by infection with Rickettsia helvetica.","definition_xrefs":["MONDO:patterns/infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spotted fever","termid":"MONDO:0001195"},{"relation_name":"is_a","term_name":"tick-borne infectious disease","termid":"MONDO:0025294"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rickettsia helvetica spotted fever","secondary_identifiers":["DOID:0050484"],"synonyms":[{"name":"Rickettsia helvetica aneruptive fever","type":"exact"},{"name":"Rickettsia helvetica caused disease or disorder","type":"exact"},{"name":"Rickettsia helvetica disease or disorder","type":"exact"},{"name":"Rickettsia helvetica infectious disease","type":"exact"},{"name":"aneruptive fever","type":"exact"}],"termid":"MONDO:0000331","xrefs":{"Monarch":{"xref_id":"0000331"}}}


id: PBO:0051947
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol-trisphosphate 3-kinase A","termid":"PBO:0051947"}


id: SO:0001330
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"N2_N2_2prime_O_trimethylguanosine is a modified guanosine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_guanosine","termid":"SO:0001276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N2_N2_2_prime_O_trimethylguanosine","secondary_identifiers":["RNAMOD:035"],"synonyms":[{"name":"N2,N2,2'-O-trimethylguanosine","type":"exact"},{"name":"m22Gmv","type":"exact"}],"termid":"SO:0001330"}


id: PBO:0001957
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulates rgf3","termid":"PBO:0001957"}


id: PBO:0108576
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clr6 and Rpd3L histone deacetylase complex LCCL domain subunit Rxt3","termid":"PBO:0108576"}


id: FYPO:0006020
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the distribution of a protein localized to chromatin along the length of genes that can be transcribed by RNA polymerase II is abnormal.","definition_xrefs":["PMID:28366642","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered spatial extent of protein localization to chromatin","termid":"FYPO:0007465"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormal protein distribution along RNA polymerase II-transcribed genes","synonyms":[{"name":"abnormal protein distribution across RNA polymerase II-transcribed genes","type":"exact"},{"name":"abnormal protein distribution along RNA polymerase II-regulated genes","type":"exact"},{"name":"abnormal protein distribution along RNA polymerase II-transcribed genes during mitotic cell cycle","type":"related"},{"name":"abnormal protein distribution along RNA polymerase II-transcribed genes during vegetative growth","type":"exact"},{"name":"abnormal protein distribution in chromatin along RNA polymerase II-transcribed genes","type":"exact"},{"name":"abnormal protein localization to chromatin along RNA polymerase II-transcribed genes","type":"exact"}],"termid":"FYPO:0006020"}


id: PBO:0025483
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metachromatic leukodystrophy","termid":"PBO:0025483"}


id: GO:0047851
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + an omega-dicarboxylic acid + CoASH= AMP + diphosphate + an omega-carboxyacyl-CoA.","definition_xrefs":["EC:6.2.1.23","MetaCyc:DICARBOXYLATE--COA-LIGASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"dicarboxylate-CoA ligase activity","secondary_identifiers":["RHEA:14289"],"synonyms":[{"name":"carboxylyl-CoA synthetase activity","type":"related"},{"name":"omega-dicarboxylate:CoA ligase (AMP-forming)","type":"related"}],"termid":"GO:0047851"}


id: PBO:0088813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-amylase homolog Aah2","termid":"PBO:0088813"}


id: PBO:0017494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hexose transmembrane transporter Ght3","termid":"PBO:0017494"}


id: MONDO:0003418
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete bile duct adenoma (obsolete MONDO:0003418)","termid":"MONDO:0003418","xrefs":{"Monarch":{"xref_id":"0003418"}}}


id: PBO:0048801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit alpha transducin 1","termid":"PBO:0048801"}


id: GO:0035985
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A transcriptionally-silent heterochromatin structure present in senescent cells. Contains the condensed chromatin of one chromosome and is enriched for histone modifications. Thought to repress expression of proliferation-promoting genes.","definition_xrefs":["GOC:yaf","PMID:21248468","PMID:15621527"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterochromatin","termid":"GO:0000792"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005694","GO:0005575"],"is_obsolete":false,"name":"senescence-associated heterochromatin focus","synonyms":[{"name":"SAHF","type":"exact"},{"name":"senescence-associated heterochromatin foci","type":"exact"}],"termid":"GO:0035985"}


id: GO:0043557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the frequency, rate or extent of translation as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translation in response to stress","termid":"GO:0043555"},{"relation_name":"part_of","term_name":"cellular response to osmotic stress","termid":"GO:0071470"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of translation in response to osmotic stress","termid":"GO:0043557"}


id: PBO:0091477
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"I:g.3460318_3460319insC","termid":"PBO:0091477"}


id: PBO:0077346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 87A","termid":"PBO:0077346"}


id: PATO:0000769
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A coordination quality of inhering in a bearer by virtue of the bearer's having skillful and effective interaction of movement.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coordination","termid":"PATO:0000188"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coordinated","termid":"PATO:0000769"}


id: GO:1902494
data:
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id: PBO:0029797
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_cable_distribution","termid":"PBO:0029797"}


id: PBO:0031587
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cell_cycle_phenotype","termid":"PBO:0031587"}


id: MONDO:0005806
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary or metastatic malignant neoplasm that affects the hypopharynx.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pharynx cancer","termid":"MONDO:0005517"},{"relation_name":"is_a","term_name":"neoplasm of hypopharynx","termid":"MONDO:0021358"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"hypopharynx cancer","secondary_identifiers":["SCTID:303012000","UMLS:C0153398","DOID:8533","ICD9:148","ICD9:148.9","NCIT:C7190","ICD9:148.3","EFO:0007321","ICD10CM:C13","MESH:D007012","MEDGEN:102266"],"synonyms":[{"name":"hypopharyngeal cancer","type":"exact"},{"name":"hypopharynx pharynx cancer","type":"exact"},{"name":"hypural pharynx cancer","type":"exact"},{"name":"malignant hypopharyngeal neoplasm","type":"exact"},{"name":"malignant hypopharyngeal tumor","type":"exact"},{"name":"malignant hypopharyngeal tumour","type":"exact"},{"name":"malignant neoplasm of hypopharynx","type":"exact"},{"name":"malignant neoplasm of ill-defined sites within the lip and oral cavity","type":"exact"},{"name":"malignant neoplasm of other specified hypopharyngeal site","type":"exact"},{"name":"malignant neoplasm of other specified sites of hypopharynx","type":"exact"},{"name":"malignant neoplasm of posterior hypopharyngeal wall","type":"exact"},{"name":"malignant neoplasm of posterior wall of hypopharynx","type":"exact"},{"name":"malignant neoplasm of the hypopharynx","type":"exact"},{"name":"malignant tumor of hypopharynx","type":"exact"},{"name":"malignant tumor of posterior wall of hypopharynx","type":"exact"},{"name":"malignant tumor of the hypopharynx","type":"exact"},{"name":"malignant tumour of hypopharynx","type":"exact"},{"name":"malignant tumour of posterior wall of hypopharynx","type":"exact"},{"name":"malignant tumour of the hypopharynx","type":"exact"},{"name":"pharynx cancer of hypopharynx","type":"exact"}],"termid":"MONDO:0005806","xrefs":{"Monarch":{"xref_id":"0005806"}}}


id: PBO:0063183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PBX3 divergent transcript","termid":"PBO:0063183"}


id: MONDO:0015396
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital laryngeal cyst is a rare larynx anomaly characterized by a cyst involving the larynx or supraglottis locations, such as the epiglottis and vallecula. Timing and severity of presentation depend on the size of the cyst and its proximity to the glottis and range from severe prenatal airway obstruction leading to polyhydramnios and pulmonary hypoplasia to postnatal inspiratory stridor associated with muffled cry, hoarseness and cyanotic episodes, and to feeding difficulties and failure to thrive. It can be associated with laryngomalacia.","definition_xrefs":["Orphanet:141124"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laryngeal disorder","termid":"MONDO:0004382"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital laryngeal cyst","secondary_identifiers":["SCTID:765763007","GARD:19953","icd11.foundation:591042640","MEDGEN:451040","UMLS:C0339880"],"termid":"MONDO:0015396","xrefs":{"Monarch":{"xref_id":"0015396"}}}


id: GO:1900525
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of phosphatidylserine biosynthetic process by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:dgf","PMID:8056324","GOC:TermGenie","PMID:8614637"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of phosphatidylserine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:1900525)","synonyms":[{"name":"activation of phosphatidylserine anabolism by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"activation of phosphatidylserine biosynthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"activation of phosphatidylserine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"activation of phosphatidylserine formation by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"activation of phosphatidylserine synthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of phosphatidylserine anabolism by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of phosphatidylserine biosynthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of phosphatidylserine formation by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of phosphatidylserine synthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up regulation of phosphatidylserine anabolism by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up regulation of phosphatidylserine biosynthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up regulation of phosphatidylserine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up regulation of phosphatidylserine formation by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up regulation of phosphatidylserine synthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of phosphatidylserine anabolism by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of phosphatidylserine biosynthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of phosphatidylserine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of phosphatidylserine formation by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"up-regulation of phosphatidylserine synthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of phosphatidylserine anabolism by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of phosphatidylserine biosynthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of phosphatidylserine biosynthetic process by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of phosphatidylserine formation by positive regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"upregulation of phosphatidylserine synthesis by positive regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1900525"}


id: MONDO:0008544
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tetramelic monodactyly is a rare, genetic, congenital limb malformation disorder characterized by the presence of a single digit on all four extremities. Malformation is typically isolated however, aplastic and hypoplastic defects in the remaining skeletal parts of hands and feet have been reported. There have been no further descriptions in the literature since 1992.","definition_xrefs":["Orphanet:2564"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"tetramelic monodactyly","secondary_identifiers":["GARD:3707","MEDGEN:349989","MESH:C566066","OMIM:187510","UMLS:C1861233"],"synonyms":[{"name":"Sommer Hines syndrome","type":"related"},{"name":"Sommer-Hines syndrome","type":"exact"},{"name":"tetramelic monodactyly","type":"exact"},{"name":"tetramelic monodactyly with autosomal dominant inheritance","type":"related"}],"termid":"MONDO:0008544","xrefs":{"Monarch":{"xref_id":"0008544"}}}


id: PBO:0029977
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_export_from_nucleus","termid":"PBO:0029977"}


id: GO:0048825
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the cotyledon over time, from its formation to the mature structure. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling.","definition_xrefs":["GOC:tb","GOC:devbiol","PO:0020030"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryo development ending in seed dormancy","termid":"GO:0009793"},{"relation_name":"is_a","term_name":"leaf development","termid":"GO:0048366"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cotyledon development","termid":"GO:0048825"}


id: PBO:0046799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coagulation factor V","termid":"PBO:0046799"}


id: MONDO:0011555
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Radio-ulnar synostosis-amegakaryocytic thrombocytopenia syndrome is characterized by the association of proximal fusion of the radius and ulna with congenital amegakaryocytic thrombocytopaenia. Less than 10 cases have been reported in the literature so far. The syndrome is transmitted as an autosomal dominant trait and is caused by mutations in the HOXA11 gene (7p15).","definition_xrefs":["Orphanet:71289"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital hematological disorder","termid":"MONDO:0009332"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"},{"relation_name":"is_a","term_name":"syndromic constitutional thrombocytopenia","termid":"MONDO:0018795"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005497","MONDO:0005570"],"is_obsolete":false,"name":"radio-ulnar synostosis-amegakaryocytic thrombocytopenia syndrome","secondary_identifiers":["MESH:C565328","SCTID:721882001","MEDGEN:340183","NANDO:2200660","UMLS:C1854273","OMIMPS:605432","GARD:16687"],"synonyms":[{"name":"ATRUS syndrome","type":"exact"},{"name":"RUSAT","type":"related"},{"name":"radioulnar synostosis with amegakaryocytic thrombocytopenia","type":"related"}],"termid":"MONDO:0011555","xrefs":{"Monarch":{"xref_id":"0011555"}}}


id: FYPO:0003415
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H4 acetylation occurs to a greater extent than normal at the central core of centromeric regions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H4 acetylation during vegetative growth","termid":"FYPO:0002365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0002494","FYPO:0002274","FYPO:0000002"],"is_obsolete":false,"name":"increased histone H4 acetylation at centromere central core during vegetative growth","synonyms":[{"name":"increased histone H4 acetylation at centromere central core during mitotic cell cycle","type":"related"},{"name":"increased histone H4 acetylation at centromeric central core during vegetative growth","type":"exact"}],"termid":"FYPO:0003415"}


id: GO:0120205
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The proximal region of the photoreceptor connecting cilium is similar to the transition zone of unspecialized primary cilia and houses several major transition zone complexes, including NPHP, MKS, and RPGR.","definition_xrefs":["PMID:29899041","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"photoreceptor connecting cilium","termid":"GO:0032391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"photoreceptor proximal connecting cilium","synonyms":[{"name":"PCC","type":"related"},{"name":"photoreceptor PCC","type":"related"}],"termid":"GO:0120205"}


id: SO:0001778
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variant present in the embryo that is carried by every cell in the body.","direct_ancestors":[{"relation_name":"is_a","term_name":"variant_origin","termid":"SO:0001762"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"germline_variant","synonyms":[{"name":"germline variant","type":"exact"}],"termid":"SO:0001778"}


id: PBO:0067087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 123, pseudogene","termid":"PBO:0067087"}


id: MONDO:0009311
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"grouped pigmentation of the retina","secondary_identifiers":["OMIM:233800","UMLS:C1856244","MEDGEN:341100","MESH:C565530"],"synonyms":[{"name":"grouped pigmentation of retinal pigment epithelium","type":"related"},{"name":"grouped pigmentation of the macula","type":"related"},{"name":"grouped pigmentation of the retina","type":"exact"}],"termid":"MONDO:0009311","xrefs":{"Monarch":{"xref_id":"0009311"}}}


id: GO:0016074
data:
  {"annotated_genes":["SJAG_04527","SJAG_00752","SJAG_02156","SJAG_06613","SJAG_03984","SJAG_00854","SJAG_00943","SJAG_02553","SJAG_04942","SJAG_01191","SJAG_01176","SJAG_01521","SJAG_01369","SJAG_04153","SJAG_04321","SJAG_04768","SJAG_03745","SJAG_02382","SJAG_03234","SJAG_04754","SJAG_03112","SJAG_03179","SJAG_02350"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[119518],"is_not":false,"summary":null,"term":"GO:0016074"},{"annotations":[112022,74965],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000494"},{"annotations":[103961],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106410"},{"annotations":[61926],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034963"},{"annotations":[81987],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000495"},{"annotations":[92857,117147,106576,115328],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034965"},{"annotations":[72298,71953],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071036"},{"annotations":[76761,77931,74891,117289,72304,79375,76009],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071051"},{"annotations":[61572],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031126"},{"annotations":[90146],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016077"},{"annotations":[89259,92566],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043144"},{"annotations":[77178],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034247"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving snoRNA, small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA metabolic process","termid":"GO:0016070"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00752":null,"SJAG_00854":null,"SJAG_00943":null,"SJAG_01176":null,"SJAG_01191":null,"SJAG_01369":null,"SJAG_01521":null,"SJAG_02156":null,"SJAG_02350":null,"SJAG_02382":null,"SJAG_02553":null,"SJAG_03112":null,"SJAG_03179":null,"SJAG_03234":null,"SJAG_03745":null,"SJAG_03984":null,"SJAG_04153":null,"SJAG_04321":null,"SJAG_04527":null,"SJAG_04754":null,"SJAG_04768":null,"SJAG_04942":null,"SJAG_06613":null},"genotype_count":0,"in_subsets":["bp_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sno(s)RNA metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"box C/D sRNA metabolic process","type":"narrow"},{"name":"snoRNA metabolism","type":"narrow"}],"termid":"GO:0016074","terms_by_termid":{"GO:0000494":null,"GO:0000495":null,"GO:0016074":null,"GO:0016077":null,"GO:0031126":null,"GO:0034247":null,"GO:0034963":null,"GO:0034965":null,"GO:0043144":null,"GO:0071036":null,"GO:0071051":null,"GO:0106410":null}}


id: PBO:0078806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 23-1","termid":"PBO:0078806"}


id: PBO:0084323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Karyopherin beta; responsible for import of the Toa1p-Toa2p complex into the nucleus; binds to nucleoporins Nup1p and Nup2p; may play a role in regulation of pleiotropic drug resistance","termid":"PBO:0084323"}


id: GO:0030720
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Directed movement of the oocyte, following its specification, from its original central position in the cyst to a posterior position relative to the nurse cells of the egg chamber, and its maintenance in this posterior location. This is the first sign of anterior-posterior asymmetry in the developing egg chamber.","definition_xrefs":["GOC:mtg_sensu","PMID:10449356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization of cell","termid":"GO:0051674"},{"relation_name":"part_of","term_name":"germarium-derived egg chamber formation","termid":"GO:0007293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"oocyte localization involved in germarium-derived egg chamber formation","synonyms":[{"name":"establishment and maintenance of oocyte localization in egg chamber","type":"exact"},{"name":"establishment and maintenance of oocyte position during oogenesis","type":"exact"},{"name":"oocyte localisation involved in germarium-derived egg chamber formation","type":"exact"},{"name":"oocyte localization during germarium-derived egg chamber formation","type":"related"},{"name":"oocyte localization during oogenesis","type":"related"},{"name":"oocyte positioning during oogenesis","type":"narrow"},{"name":"oogenesis, establishment and maintenance of oocyte localization","type":"exact"},{"name":"oogenesis, oocyte localization","type":"exact"}],"termid":"GO:0030720"}


id: GO:1901454
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of response to toluene.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"regulates","term_name":"response to toluene","termid":"GO:1901424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of response to toluene","termid":"GO:1901454"}


id: GO:0050925
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of a motile cell or organism towards a lower concentration in a concentration gradient of a specific chemical.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of chemotaxis","termid":"GO:0050922"},{"relation_name":"is_a","term_name":"regulation of negative chemotaxis","termid":"GO:0050923"},{"relation_name":"negatively_regulates","term_name":"negative chemotaxis","termid":"GO:0050919"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of negative chemotaxis","synonyms":[{"name":"down regulation of negative chemotaxis","type":"exact"},{"name":"down-regulation of negative chemotaxis","type":"exact"},{"name":"downregulation of negative chemotaxis","type":"exact"},{"name":"inhibition of negative chemotaxis","type":"narrow"}],"termid":"GO:0050925"}


id: GO:0005177
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A class of ligands for neurexins.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete neuroligin (obsolete GO:0005177)","synonyms":[{"name":"neuroligin","type":"exact"}],"termid":"GO:0005177"}


id: PBO:0039355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amidohydrolase domain containing 1","termid":"PBO:0039355"}


id: PR:Q9P7G9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An adenylyl-sulfate kinase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01978","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylyl-sulfate kinase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1782.11","secondary_identifiers":["UniProtKB:Q9P7G9"],"synonyms":[{"name":"APS kinase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ATP adenosine-5'-phosphosulfate 3'-phosphotransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cysC","type":"exact"},{"name":"adenosine-5'-phosphosulfate kinase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7G9"}


id: MONDO:1012073
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"multiple exostoses, non-human animal","termid":"MONDO:1011944"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multiple exostoses, dog","secondary_identifiers":["OMIA:000354-9615"],"termid":"MONDO:1012073","xrefs":{"Monarch":{"xref_id":"1012073"}}}


id: MONDO:0014479
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"disseminated superficial actinic porokeratosis","termid":"MONDO:0019212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"porokeratosis 8, disseminated superficial actinic type","secondary_identifiers":["MEDGEN:863565","OMIM:616063","UMLS:C4015128","GARD:16056"],"synonyms":[{"name":"POROK8","type":"related"},{"name":"porokeratosis 8, disseminated superficial actinic type","type":"exact"}],"termid":"MONDO:0014479","xrefs":{"Monarch":{"xref_id":"0014479"}}}


id: PBO:0065698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pumilio RNA binding family member 3","termid":"PBO:0065698"}


id: PBO:0076015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STK4 divergent transcript","termid":"PBO:0076015"}


id: SO:0000471
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The gene product is involved in its own transcriptional regulation.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcriptionally_regulated","termid":"SO:0000123"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autoregulated","termid":"SO:0000471"}


id: PBO:0069470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 737, pseudogene","termid":"PBO:0069470"}


id: MONDO:0001124
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete filariasis (obsolete MONDO:0001124)","termid":"MONDO:0001124","xrefs":{"Monarch":{"xref_id":"0001124"}}}


id: PBO:0070260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U11 small nuclear 5, pseudogene","termid":"PBO:0070260"}


id: MONDO:0003914
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete inborn purine-pyrimidine metabolic disorder (obsolete MONDO:0003914)","termid":"MONDO:0003914","xrefs":{"Monarch":{"xref_id":"0003914"}}}


id: PBO:0071703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene","termid":"PBO:0071703"}


id: PBO:0113288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Positive regulator of the Gcn2p kinase activity; forms a complex with Gcn20p; proposed to stimulate Gcn2p activation by an uncharged tRNA; suppresses frameshifting at stalled ribosomes","termid":"PBO:0113288"}


id: MONDO:0008287
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Greig cephalopolysyndactyly syndrome (GCPS) is a pleiotropic, multiple congenital anomaly syndrome.","definition_xrefs":["Orphanet:380"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"acrocephalosyndactyly","termid":"MONDO:0019796"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"polydactyly-syndactyly-triphalangism","termid":"MONDO:0800066"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Greig cephalopolysyndactyly syndrome","secondary_identifiers":["MESH:C537300","icd11.foundation:606500237","SCTID:32985001","MedDRA:10053878","OMIM:175700","UMLS:C0265306","MEDGEN:120531","DOID:14761","GARD:6550","NCIT:C35255","NORD:1206"],"synonyms":[{"name":"GCPS","type":"exact"},{"name":"Greig cephalopolysyndactyly syndrome","type":"exact"},{"name":"Greig cephalosyndactyly syndrome","type":"exact"},{"name":"Greig syndrome","type":"related"},{"name":"Greig's syndrome","type":"exact"},{"name":"polysyndactyly with peculiar skull Shape","type":"related"},{"name":"polysyndactyly with peculiars skull shape","type":"exact"}],"termid":"MONDO:0008287","xrefs":{"Monarch":{"xref_id":"0008287"}}}


id: MONDO:0004816
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A plasma cell neoplasm that is resistant to treatment.","definition_xrefs":["NCIT:C7813"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"plasma cell myeloma","termid":"MONDO:0009693"},{"relation_name":"is_a","term_name":"refractory hematologic cancer","termid":"MONDO:0004111"},{"relation_name":"is_a","term_name":"plasma cell neoplasm","termid":"MONDO:0004959"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"refractory plasma cell neoplasm","secondary_identifiers":["DOID:9544","UMLS:C0278620","MEDGEN:75844"],"synonyms":[{"name":"refractory plasma cell neoplasm","type":"exact"}],"termid":"MONDO:0004816","xrefs":{"Monarch":{"xref_id":"0004816"}}}


id: GO:0052001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Attachment of bacterial clusters to the surface of the host in a type IV pili dependent manner. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:ml"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adhesion of symbiont to host cell","termid":"GO:0044650"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adhesion to host cell via type IV pili","synonyms":[{"name":"type IV pili-dependent localized adherence to host","type":"exact"}],"termid":"GO:0052001"}


id: PBO:0017905
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ask2 is the name which was given to the spurious orf on the opposite strand","termid":"PBO:0017905"}


id: FYPO:0000243
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cells grow normally (i.e. indistinguishably from wild type) in a medium containing L-proline as the nitrogen source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000257","FYPO:0000139","FYPO:0002060","FYPO:0002058","FYPO:0000003"],"is_obsolete":false,"name":"normal growth on proline nitrogen source","synonyms":[{"name":"growth defect, normal growth with proline nitrogen source","type":"related"},{"name":"normal cell population growth on proline nitrogen source","type":"exact"},{"name":"normal vegetative cell population growth on proline nitrogen source","type":"exact"}],"termid":"FYPO:0000243"}


id: PBO:0072525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 54","termid":"PBO:0072525"}


id: GO:0009488
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A copper-containing protein that acts as an electron carrier between methylamine dehydrogenase and cytochrome c.","definition_xrefs":["PMID:1655423"],"gene_count":0,"genotype_count":0,"name":"obsolete amicyanin (obsolete GO:0009488)","synonyms":[{"name":"amicyanin","type":"exact"}],"termid":"GO:0009488"}


id: PBO:0079830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"upstream master lncRNA of the inflammatory chemokine locus","termid":"PBO:0079830"}


id: GO:0071962
data:
  {"annotated_genes":["SJAG_01601","SJAG_03418"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92694,100907],"is_not":false,"summary":null,"term":"GO:0071962"}]},"cv_name":"biological_process","definition":"The cell cycle process in which centromeres of sister chromatids are joined during mitosis.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic sister chromatid cohesion","termid":"GO:0007064"},{"relation_name":"is_a","term_name":"centromeric sister chromatid cohesion","termid":"GO:0070601"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01601":null,"SJAG_03418":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"mitotic sister chromatid cohesion, centromeric","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"centromeric mitotic sister chromatin cohesion","type":"exact"},{"name":"mitotic sister chromatid cohesion at centromere","type":"exact"},{"name":"sister chromatid cohesion at centromere at mitosis","type":"exact"}],"termid":"GO:0071962","terms_by_termid":{"GO:0071962":null}}


id: FYPO:0000149
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell process phenotype that affects a transport process.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization phenotype","termid":"FYPO:0000138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"transport phenotype","synonyms":[{"name":"fission yeast transport phenotype","type":"exact"}],"termid":"FYPO:0000149"}


id: PBO:0077809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor protein p53 regulated apoptosis inducing protein 1","termid":"PBO:0077809"}


id: MONDO:0013789
data:
  {"annotated_genes":["SJAG_01069"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88167],"is_not":false,"summary":null,"term":"MONDO:0013789"}]},"cv_name":"mondo","definition":"DDOST-CDG is a form of congenital disorders of N-linked glycosylation characterized by failure to thrive, developmental delay, hypotonia, strabismus and hepatic dysfunction. The disease is caused by mutations in the gene DDOST (1p36.1).","definition_xrefs":["Orphanet:300536"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type I","termid":"MONDO:0005500"},{"relation_name":"is_a","term_name":"disorder of protein N-glycosylation","termid":"MONDO:0017740"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01069":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"DDOST-congenital disorder of glycosylation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:733083006","UMLS:C3281084","OMIM:614507","GARD:12398","DOID:0080569","MEDGEN:482714"],"synonyms":[{"name":"CDG syndrome type Ir","type":"exact"},{"name":"CDG-Ir","type":"exact"},{"name":"CDG1R","type":"exact"},{"name":"DDOST-CDG","type":"exact"},{"name":"DDOST-CDG (CDG-Ir)","type":"related"},{"name":"DDOST-congenital disorder of glycosylation","type":"exact"},{"name":"carbohydrate deficient glycoprotein syndrome type","type":"related"},{"name":"carbohydrate deficient glycoprotein syndrome type Ir","type":"exact"},{"name":"congenital disorder of glycosylation type 1r","type":"exact"},{"name":"congenital disorder of glycosylation type Ir","type":"exact"},{"name":"congenital disorder of glycosylation, type Ir","type":"related"}],"termid":"MONDO:0013789","terms_by_termid":{"MONDO:0013789":null},"xrefs":{"Monarch":{"xref_id":"0013789"}}}


id: MONDO:1012874
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hearing loss and hypercholesterolaemia that occurs in pigs due to a mutation in the OSBPL2 gene created by genetic engineering or gene editing.","definition_xrefs":["OMIA:002360-9823"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss disorder, non-human animal","termid":"MONDO:1012969"},{"relation_name":"is_a","term_name":"inherited auditory system disease, non-human animal","termid":"MONDO:1012970"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deafness, OSBPL2-related, pig","termid":"MONDO:1012874","xrefs":{"Monarch":{"xref_id":"1012874"}}}


id: GO:0005583
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any triple helical collagen trimer that forms fibrils.","definition_xrefs":["GOC:mah","ISBN:0721639976","PMID:21421911"],"direct_ancestors":[{"relation_name":"is_a","term_name":"collagen trimer","termid":"GO:0005581"},{"relation_name":"part_of","term_name":"fibrillar collagen","termid":"GO:0098643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"fibrillar collagen trimer","termid":"GO:0005583"}


id: PBO:0074782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 4A","termid":"PBO:0074782"}


id: GO:0050777
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune system process","termid":"GO:0002683"},{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"is_a","term_name":"regulation of immune response","termid":"GO:0050776"},{"relation_name":"negatively_regulates","term_name":"immune response","termid":"GO:0006955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of immune response","synonyms":[{"name":"down regulation of immune response","type":"exact"},{"name":"down-regulation of immune response","type":"exact"},{"name":"downregulation of immune response","type":"exact"},{"name":"inhibition of immune response","type":"narrow"}],"termid":"GO:0050777"}


id: PBO:0111741
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sub-telomeric 5Tm protein family","termid":"PBO:0111741"}


id: MONDO:0010825
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Atrioventricular defect-blepharophimosis-radial and anal defect syndrome is a rare, genetic multiple congenital anomaly syndrome characterized by atrioventricular septal defects and blepharophimosis, in addition to radial (e.g. aplastic radius, shortened ulna, fifth finger clinodactyly, absent first metacarpal and thumb) and anal (e.g. imperforate or anteriorly place anus, rectovaginal fistula) defects.","definition_xrefs":["Orphanet:1352"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"heart disorder","termid":"MONDO:0005267"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"disorder of visual system","termid":"MONDO:0024458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"atrioventricular defect-blepharophimosis-radial and anal defect syndrome","secondary_identifiers":["MESH:C563994","GARD:2742","MEDGEN:374010","OMIM:600123","UMLS:C1838606"],"synonyms":[{"name":"Houlston-Ironton-Temple syndrome","type":"exact"},{"name":"atrioventricular septal defect with blepharophimosis and anal and radial defects","type":"related"}],"termid":"MONDO:0010825","xrefs":{"Monarch":{"xref_id":"0010825"}}}


id: PBO:0082298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Aromatic aminotransferase I; expression is regulated by general control of amino acid biosynthesis; involved with Aro9p in production of kynurenic acid to detoxify excess tryptophan","termid":"PBO:0082298"}


id: FYPO:0004757
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype in which negative regulation of the initiation of DNA-dependent DNA replication is abnormal. May result in re-replication of all or part of the genome.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of DNA replication initiation","termid":"FYPO:0004756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal negative regulation of DNA replication initiation","synonyms":[{"name":"DNA re-replication","type":"related"},{"name":"DNA replication defects, endoreduplication","type":"related"},{"name":"DNA rereplication","type":"related"},{"name":"abnormal negative regulation of DNA-dependent DNA replication initiation","type":"exact"}],"termid":"FYPO:0004757"}


id: PBO:0077587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMPO antisense RNA 1","termid":"PBO:0077587"}


id: PBO:0065747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyrroline-5-carboxylate reductase 2","termid":"PBO:0065747"}


id: PBO:0083017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deleted open reading frame; YCR070W was originally annotated as an ORF, but upon further review was deleted from the genome annotation","termid":"PBO:0083017"}


id: PBO:0000483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sec14 cytosolic factor family Sec14","termid":"PBO:0000483"}


id: MONDO:0011199
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"primary sclerosing cholangitis","termid":"MONDO:0013433"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"nephropathy, progressive tubulointerstitial, with cholestatic liver disease","secondary_identifiers":["OMIM:602114","UMLS:C1865831","MEDGEN:355562","GARD:15344","MESH:C566573"],"synonyms":[{"name":"nephropathy, progressive tubulointerstitial, with cholestatic liver disease","type":"exact"}],"termid":"MONDO:0011199","xrefs":{"Monarch":{"xref_id":"0011199"}}}


id: GO:0050521
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: [(1->4)-alpha-D-glucosyl](n) + n ATP + n H2O = [(1->4)-6-phospho-alpha-D-glucosyl](n) + n AMP + 2n H+ + n phosphate.","definition_xrefs":["RHEA:11668"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, paired acceptors","termid":"GO:0016781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016301","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"alpha-glucan, water dikinase activity","secondary_identifiers":["EC:2.7.9.4","MetaCyc:2.7.9.4-RXN"],"synonyms":[{"name":"ATP:alpha-glucan, water phosphotransferase activity","type":"related"},{"name":"GWD","type":"related"},{"name":"a-glucan, water dikinase activity","type":"exact"},{"name":"alpha-glucan,water dikinase activity","type":"related"},{"name":"starch-related R1 protein activity","type":"related"}],"termid":"GO:0050521"}


id: PBO:0086214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that binds to DNA mismatches; forms heterodimers with Msh3p and Msh6p that bind to DNA mismatches to initiate the mismatch repair process; contains a Walker ATP-binding motif required for repair activity and involved in interstrand cross-link repair; Msh2p-Msh6p binds to and hydrolyzes ATP; required for silencing at the silent mating-type loci and telomeres","termid":"PBO:0086214"}


id: GO:0000512
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A post-transcriptional gene silencing pathway in which regulatory long noncoding RNAs (lncRNAs) elicit silencing of specific target genes, often miRNAs or mRNAs.","definition_xrefs":["PMID:34454184","PMID:35055152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory ncRNA-mediated post-transcriptional gene silencing","termid":"GO:0035194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"lncRNA-mediated post-transcriptional gene silencing","synonyms":[{"name":"lncRNA-mediated gene silencing","type":"broad"}],"termid":"GO:0000512"}


id: PBO:0050201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 18","termid":"PBO:0050201"}


id: GO:0140944
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-lysyl20-[histone H4] + S-adenosyl-L-methionine = H+ + N6-methyl-L-lysyl20-[histone H4] + S-adenosyl-L-homocysteine. This reaction is the addition of a methyl group to the unmethylated lysine residue at position 20 of histone H4, producing histone H4K20me.","definition_xrefs":["RHEA:60344"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H4K20 methyltransferase activity","termid":"GO:0042799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0008276","GO:0140096","GO:0016741","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"histone H4K20 monomethyltransferase activity","secondary_identifiers":["EC:2.1.1.361"],"synonyms":[{"name":"histone H4-K20 methylation","type":"broad"},{"name":"histone H4K20 methylase activity","type":"broad"},{"name":"histone H4K20 methylation","type":"broad"},{"name":"histone H4K20 monomethylation","type":"exact"},{"name":"histone lysine N-monomethyltransferase activity (H4-K20 specific)","type":"exact"}],"termid":"GO:0140944"}


id: PATO:0001959
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated.","definition_xrefs":["PATOC:mw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fasciculation","termid":"PATO:0002013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defasciculated","termid":"PATO:0001959"}


id: PBO:0001800
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.3.1.20","termid":"PBO:0001800"}


id: PBO:0060990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NHERF family PDZ scaffold protein 1","termid":"PBO:0060990"}


id: MONDO:0013607
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"GATA2 deficiency with susceptibility to MDS/AML","termid":"MONDO:0042982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"monocytopenia with susceptibility to infections","secondary_identifiers":["DOID:0111947","GARD:10934","MEDGEN:481660","UMLS:C3280030","icd11.foundation:1077753382","Orphanet:228423","OMIM:614172"],"synonyms":[{"name":"DCML","type":"related"},{"name":"Dendritic cell, monocyte, B and NK lymphoid deficiency","type":"exact"},{"name":"Dendritic cell, monocyte, B lymphocyte, and natural Killer lymphocyte deficiency","type":"related"},{"name":"GATA2 deficiency","type":"related"},{"name":"IMD21","type":"related"},{"name":"MonoMAC","type":"exact"},{"name":"combined immunodeficiency with susceptibility to mycobacterial, viral and fungal infections","type":"exact"},{"name":"combined immunodeficiency with susceptibility to mycobacterial, viral, and fungal infections","type":"related"},{"name":"immunodeficiency 21","type":"related"},{"name":"immunodeficiency type 21","type":"exact"},{"name":"monocyte - B - natural killer - dendritic cell deficiency","type":"related"},{"name":"monocyte-B-natural killer-dendritic cell deficiency syndrome","type":"exact"},{"name":"monocytopenia and mycobacterial infection syndrome","type":"exact"},{"name":"monocytopenia with susceptibility to mycobacterial, fungal, and Papillomavirus infections and myelodysplasia","type":"related"}],"termid":"MONDO:0013607","xrefs":{"Monarch":{"xref_id":"0013607"}}}


id: GO:0044181
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a multicellular organism grows in a threadlike, filamentous shape.","definition_xrefs":["GOC:mtg_cambridge_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"filamentous growth","termid":"GO:0030447"},{"relation_name":"is_a","term_name":"developmental growth involved in morphogenesis","termid":"GO:0060560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"filamentous growth of a multicellular organism","termid":"GO:0044181"}


id: PBO:0090093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphofructo-2-kinase/fructose-2,6-bisphosphate 2-phosphatase","termid":"PBO:0090093"}


id: MONDO:0011583
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cerebral amyloid angiopathy that has material basis in an autosomal dominant mutation of APP on chromosome 21q21.3.","definition_xrefs":["DOID:0070028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebral amyloid angiopathy","termid":"MONDO:0005620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0021179"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0021179","MONDO:0005066"],"is_obsolete":false,"name":"cerebral amyloid angiopathy, APP-related","secondary_identifiers":["NCIT:C157147","OMIM:605714","UMLS:C2751536","MEDGEN:414044"],"synonyms":[{"name":"APP-related cerebral amyloid angiopathy","type":"related"},{"name":"HCHWAD","type":"exact"},{"name":"amyloidosis, Cerebroarterial, APP-related","type":"exact"},{"name":"amyloidosis, hereditary, with cerebral hemorrhage, Dutch variant","type":"related"},{"name":"cerebral amyloid angiopathy, APP-related","type":"exact"},{"name":"cerebral amyloid angiopathy, APP-related, Arctic variant","type":"related"},{"name":"cerebral amyloid angiopathy, APP-related, Dutch variant","type":"related"},{"name":"cerebral amyloid angiopathy, APP-related, Flemish variant","type":"related"},{"name":"cerebral amyloid angiopathy, APP-related, Iowa variant","type":"related"},{"name":"cerebral amyloid angiopathy, APP-related, Italian variant","type":"related"},{"name":"cerebral amyloid angiopathy, Dutch, Italian, Iowa, Flemish, Arctic variants","type":"exact"}],"termid":"MONDO:0011583","xrefs":{"Monarch":{"xref_id":"0011583"}}}


id: PBO:0048110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-L-fucosidase 2","termid":"PBO:0048110"}


id: GO:0052706
data:
  {"annotated_genes":["SJAG_00832"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75532],"is_not":false,"summary":null,"term":"GO:0052706"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-histidine + 3 S-adenosyl-L-methionine <=> 3 H(+) + hercynine + 3 S-adenosyl-L-homocysteine. This reaction is the addition of three methyl groups to L-histidine to form N-alpha,N-alpha,N-alpha-trimethyl-L-histidine (also known as hercynine).","definition_xrefs":["RHEA:38471"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00832":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"L-histidine N(alpha)-methyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:RXN-14431","EC:2.1.1.44","KEGG_REACTION:R01169"],"synonyms":[{"name":"S-adenosyl-L-methionine:L-histidine Nalpha-methyltransferase activity","type":"exact"},{"name":"S-adenosyl-L-methionine:L-histidine alpha-N-methyltransferase activity","type":"exact"},{"name":"histidine N-methyltransferase activity","type":"exact"},{"name":"histidine methyltransferase activity","type":"exact"},{"name":"histidine-alpha-N-methyltransferase activity","type":"exact"}],"termid":"GO:0052706","terms_by_termid":{"GO:0052706":null}}


id: MONDO:0054716
data:
  {"annotated_genes":["SJAG_04070"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86805],"is_not":false,"summary":null,"term":"MONDO:0054716"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive primary microcephaly","termid":"MONDO:0016660"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04070":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0700092"],"is_obsolete":false,"name":"microcephaly 19, primary, autosomal recessive","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4540488","OMIM:617800","DOID:0070281","MEDGEN:1616860","GARD:16253"],"synonyms":[{"name":"MCPH19","type":"related"},{"name":"microcephaly 19, PRIMARY, autosomal recessive","type":"related"},{"name":"primary autosomal recessive microcephaly 19","type":"related"}],"termid":"MONDO:0054716","terms_by_termid":{"MONDO:0054716":null},"xrefs":{"Monarch":{"xref_id":"0054716"}}}


id: GO:0005123
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a member of the death receptor (DR) family. The DR family falls within the tumor necrosis factor receptor superfamily and is characterized by a cytoplasmic region of ~80 residues termed the death domain (DD).","definition_xrefs":["GOC:ceb","GOC:rl","PMID:15654015"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tumor necrosis factor receptor superfamily binding","termid":"GO:0032813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"death receptor binding","synonyms":[{"name":"APO binding","type":"narrow"},{"name":"DR binding","type":"narrow"},{"name":"EDAR binding","type":"narrow"},{"name":"FAS binding","type":"narrow"},{"name":"KILLER binding","type":"narrow"},{"name":"NGFR binding","type":"narrow"},{"name":"TNFR1 binding","type":"narrow"},{"name":"TRAIL binding","type":"narrow"},{"name":"death receptor adaptor protein activity","type":"related"},{"name":"death receptor interacting protein activity","type":"related"},{"name":"death receptor ligand","type":"narrow"},{"name":"death receptor-associated factor activity","type":"related"}],"termid":"GO:0005123"}


id: PBO:0062140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily F member 7 pseudogene","termid":"PBO:0062140"}


id: GO:0032809
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The plasma membrane of a neuron cell body - excludes the plasma membrane of cell projections such as axons and dendrites.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell body membrane","termid":"GO:0044298"},{"relation_name":"part_of","term_name":"neuronal cell body","termid":"GO:0043025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"neuronal cell body membrane","synonyms":[{"name":"neuron cell body membrane","type":"exact"},{"name":"neuronal cell soma membrane","type":"exact"}],"termid":"GO:0032809"}


id: MONDO:0030323
data:
  {"annotated_genes":["SJAG_00645"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88074],"is_not":false,"summary":null,"term":"MONDO:0030323"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive cerebellar ataxia","termid":"MONDO:0015244"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00645":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005559"],"is_obsolete":false,"name":"spinocerebellar ataxia, autosomal recessive 31","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:619422","MEDGEN:1786855","DOID:0070412","UMLS:C5543627"],"synonyms":[{"name":"SCAR31","type":"exact"},{"name":"spinocerebellar ataxia, autosomal recessive 31","type":"exact"}],"termid":"MONDO:0030323","terms_by_termid":{"MONDO:0030323":null},"xrefs":{"Monarch":{"xref_id":"0030323"}}}


id: PBO:0059930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 16","termid":"PBO:0059930"}


id: PBO:0018225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sec14 cytosolic factor family, glycerophospholipid-transfer protein (predicted)","termid":"PBO:0018225"}


id: PBO:0077665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF receptor superfamily member 11b","termid":"PBO:0077665"}


id: PBO:0000838
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.8.7.1","termid":"PBO:0000838"}


id: PR:O94303
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- his4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94303"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"imidazole glycerol phosphate synthase hisHF (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC418.01c","synonyms":[{"name":"IGP synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"IGPS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ImGP synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-his4","type":"exact"}],"termid":"PR:O94303"}


id: PBO:0055111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2530","termid":"PBO:0055111"}


id: PBO:0027641
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_caffeine_during_meiosis_II","termid":"PBO:0027641"}


id: PBO:0062975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) binding protein cytoplasmic 5","termid":"PBO:0062975"}


id: PBO:0046998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A1","termid":"PBO:0046998"}


id: PBO:0083701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER-associated chaperone involved in protein targeting; redirects mitochondrial membrane protein precursors to mitochondrial translocation system; required for peroxisomal protein import and involved in peroxisome assembly; facilitates import of Mim1p and Mim2p into the mitochondrial outer membrane; homologous to E. coli DnaJ","termid":"PBO:0083701"}


id: PBO:0078130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 12-1","termid":"PBO:0078130"}


id: MONDO:0800197
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"color vision disorder","termid":"MONDO:0001703"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"achromatopsia 6","secondary_identifiers":["MEDGEN:765141","UMLS:C3552227"],"synonyms":[{"name":"ACHM6","type":"exact"}],"termid":"MONDO:0800197","xrefs":{"Monarch":{"xref_id":"0800197"}}}


id: MONDO:0010098
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Taurodontism is a dental anomaly characterized by an elongated pulp chamber, displaced toward the apical floor of the tooth with no constriction at the level of the cemento-enamel junction, and short roots. It most frequently affects permanent molar teeth. Taurodontism increases the risk of pulp exposure. It can be isolated or associated with certain syndromes such as Down syndrome, amelogenesis imperfecta, and Klinefelter syndrome.","definition_xrefs":["Orphanet:3289"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"tooth disorder","termid":"MONDO:0006999"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taurodontism","secondary_identifiers":["MEDGEN:75596","MESH:C536946","UMLS:C0266039","OMIM:272700","SCTID:51744007","icd11.foundation:356382747","HP:0000679"],"synonyms":[{"name":"Bull teeth","type":"related"},{"name":"large pulp chambers in the molars","type":"related"},{"name":"taurodontism","type":"exact"},{"name":"taurodontism (disease)","type":"exact"}],"termid":"MONDO:0010098","xrefs":{"Monarch":{"xref_id":"0010098"}}}


id: PBO:0017637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin family protein Mpd1 (predicted)","termid":"PBO:0017637"}


id: PBO:0041103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BSG antisense RNA 1","termid":"PBO:0041103"}


id: PBO:0039855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 21","termid":"PBO:0039855"}


id: PBO:0083304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps almost completely with the verified ORF MTL1/YGR023W","termid":"PBO:0083304"}


id: PBO:0003791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4/nocturin family endoribonuclease (predicted)","termid":"PBO:0003791"}


id: PBO:0040048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARPC1A pseudogene 4","termid":"PBO:0040048"}


id: GO:0042023
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Regulated re-replication of DNA within a single cell cycle, resulting in an increased cell ploidy. An example of this process occurs in the synthesis of Drosophila salivary gland cell polytene chromosomes.","definition_xrefs":["GOC:vw","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle DNA replication","termid":"GO:0044786"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006260","GO:0007049","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"DNA endoreduplication","synonyms":[{"name":"DNA endoreplication","type":"exact"},{"name":"DNA re-duplication","type":"exact"}],"termid":"GO:0042023"}


id: GO:0042160
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the covalent alteration of one or more amino acid or lipid residues occurring in a lipoprotein, any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipoprotein metabolic process","termid":"GO:0042157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lipoprotein modification","termid":"GO:0042160"}


id: GO:0061152
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the trachea submucosa over time from its formation to the mature structure. The trachea submucosa is made up of the glands and elastic tissue that lie under the mucosa in the trachea.","definition_xrefs":["GOC:yaf","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"trachea development","termid":"GO:0060438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trachea submucosa development","termid":"GO:0061152"}


id: MOD:01863
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a residue with one of the Applied Biosystems mTRAQ reagent reporter+balance groups.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"},{"relation_name":"is_a","term_name":"isotope tagged reagent acylated residue","termid":"MOD:01705"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mTRAQ reporter+balance reagent acylated residue","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems mTRAQ(TM) reagent","type":"related"}],"termid":"MOD:01863"}


id: PBO:0091711
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cleavage FacTor","termid":"PBO:0091711"}


id: PATO:0001355
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"concavity","termid":"PATO:0002005"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"convex","termid":"PATO:0001355"}


id: FYPO:0005344
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which formation of the mitotic spindle midzone, the area in the center of the mitotic spindle where the spindle microtubules from opposite poles overlap, does not occur.","definition_xrefs":["PomBase:mah","GO:0051256"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle midzone assembly","termid":"FYPO:0003304"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0000337"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0001985","FYPO:0000337","FYPO:0000631","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0000641"],"is_obsolete":false,"name":"abolished mitotic spindle midzone assembly","synonyms":[{"name":"abolished mitotic spindle midzone assembly during vegetative growth","type":"exact"},{"name":"abolished spindle midzone assembly during mitotic cell cycle","type":"related"},{"name":"abolished spindle midzone assembly involved in mitosis","type":"exact"},{"name":"mitotic spindle midzone assembly abolished","type":"exact"}],"termid":"FYPO:0005344"}


id: PBO:0076727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell leukemia/lymphoma 6","termid":"PBO:0076727"}


id: PBO:0079482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taxilin gamma pseudogene, Y-linked","termid":"PBO:0079482"}


id: PBO:0083878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ferredoxin of the mitochondrial matrix; required for formation of cellular iron-sulfur proteins; involved in heme A biosynthesis; human homolog FDX1L can complement yeast by allowing growth during down-regulation of yeast YAH1","termid":"PBO:0083878"}


id: PBO:0044693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-dopachrome tautomerase","termid":"PBO:0044693"}


id: PBO:0030695
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_glutathione-disulfide_reductase_activity","termid":"PBO:0030695"}


id: GO:0010039
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to metal ion","termid":"GO:0010038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to iron ion","synonyms":[{"name":"response to iron","type":"exact"}],"termid":"GO:0010039"}


id: MONDO:0007218
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Brachydactyly type A4 (BDA4) is a congenital malformation characterized by brachymesophalangy affecting mainly the 2nd and the 5th digit.","definition_xrefs":["Orphanet:93394"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brachydactyly","termid":"MONDO:0021004"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brachydactyly type A4","secondary_identifiers":["DOID:0110967","MESH:C537097","icd11.foundation:10379198","GARD:990","UMLS:C1862139","SCTID:715721005","MEDGEN:354669","OMIM:112800"],"synonyms":[{"name":"BDA4","type":"exact"},{"name":"Brachymesophalangy 2 and 5","type":"related"},{"name":"Brachymesophalangy II and V","type":"exact"},{"name":"Temtamy type brachydactyly","type":"exact"},{"name":"brachydactyly Temtamy type","type":"related"},{"name":"brachydactyly, Temtamy type","type":"exact"},{"name":"brachydactyly, type A4","type":"related"},{"name":"brachymesophalangy II and V","type":"exact"}],"termid":"MONDO:0007218","xrefs":{"Monarch":{"xref_id":"0007218"}}}


id: PBO:0087224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Secondary mitochondrial inner membrane glycine transporter; required with HEM25 for the transport of glycine into mitochondria for the initiation of heme biosynthesis; proposed role in oleate metabolism and glutamate biosynthesis; member of the mitochondrial carrier (MCF) family; localizes to the vacuole in response to H2O2; YMC1 has a paralog, YMC2, that arose from the whole genome duplication","termid":"PBO:0087224"}


id: GO:0034525
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-naphthaldehyde + NAD+ + H2O = 1-naphthoic acid + NADH + H+.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-naphthaldehyde dehydrogenase activity (obsolete GO:0034525)","termid":"GO:0034525"}


id: PBO:0070727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L9 pseudogene 32","termid":"PBO:0070727"}


id: PBO:0000125
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sim Four and mal Two Associated protein","termid":"PBO:0000125"}


id: PBO:0044387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily AB member 1, pseudogene","termid":"PBO:0044387"}


id: PBO:0068892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 133, pseudogene","termid":"PBO:0068892"}


id: GO:0001723
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. High molecular weight (100-300 kDa) proteins that associate with intermediate filaments to cross-link them into loose networks.","definition_xrefs":["PMID:9484600","GOC:ajp"],"gene_count":0,"genotype_count":0,"name":"obsolete type II intermediate filament associated protein (obsolete GO:0001723)","synonyms":[{"name":"type II intermediate filament associated protein","type":"exact"}],"termid":"GO:0001723"}


id: MONDO:0012822
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"colorectal cancer","termid":"MONDO:0005575"},{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colorectal cancer, susceptibility to, 6","secondary_identifiers":["UMLS:C2677121","MEDGEN:436865","OMIM:612231"],"synonyms":[{"name":"CRCS6","type":"exact"},{"name":"colorectal cancer, susceptibility to, 6","type":"exact"},{"name":"colorectal cancer, susceptibility to, on chromosome 8Q23","type":"related"}],"termid":"MONDO:0012822","xrefs":{"Monarch":{"xref_id":"0012822"}}}


id: PBO:0039990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 6 interacting protein 4","termid":"PBO:0039990"}


id: MONDO:0043975
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome associated with damage to the spinal cord above the mid thoracic level (see SPINAL CORD INJURIES) characterized by a marked increase in the sympathetic response to minor stimuli such as bladder or rectal distention. Manifestations include HYPERTENSION; TACHYCARDIA (or reflex bradycardia); FEVER; FLUSHING; and HYPERHIDROSIS. Extreme hypertension may be associated with a STROKE. (From Adams et al., Principles of Neurology, 6th ed, pp538 and 1232; J Spinal Cord Med 1997;20(3):355-60)","definition_xrefs":["MESH:D020211"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autonomic nervous system disorder","termid":"MONDO:0001292"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autonomic dysreflexia","secondary_identifiers":["ICD10CM:G90.4","SCTID:129618003","UMLS:C0238015","MEDGEN:66758","icd11.foundation:1401282234"],"synonyms":[{"name":"Dysreflexia, autonomic","type":"related"},{"name":"Dysreflexia, spinal autonomic","type":"related"},{"name":"Dysreflexias, autonomic","type":"related"},{"name":"Dysreflexias, spinal autonomic","type":"related"},{"name":"autonomic Dysreflexia, spinal","type":"related"},{"name":"autonomic Dysreflexias","type":"related"},{"name":"autonomic Dysreflexias, spinal","type":"related"},{"name":"autonomic Hyperreflexias","type":"related"},{"name":"autonomic dysreflexia","type":"exact"},{"name":"autonomic hyperreflexia","type":"related"},{"name":"dysreflexia","type":"related"},{"name":"hyperreflexia, autonomic","type":"related"},{"name":"hyperreflexias, autonomic","type":"related"},{"name":"spinal autonomic Dysreflexia","type":"related"},{"name":"spinal autonomic Dysreflexias","type":"related"}],"termid":"MONDO:0043975","xrefs":{"Monarch":{"xref_id":"0043975"}}}


id: MONDO:0009397
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Neonatal severe primary hyperparathyroidism (NSHPT) is characterized by severe hypercalcemia (> 3.5 mM) from birth and associated with major hyperparathyroidism.","definition_xrefs":["Orphanet:417"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with defective bone mineralization (obsolete MONDO:0019705)","termid":"MONDO:0019705"},{"relation_name":"is_a","term_name":"familial primary hyperparathyroidism","termid":"MONDO:0016365"},{"relation_name":"is_a","term_name":"bone neoplasm","termid":"MONDO:0019060"},{"relation_name":"is_a","term_name":"hereditary disorder of connective tissue","termid":"MONDO:0023603"},{"relation_name":"is_a","term_name":"abnormal mineralization disorder","termid":"MONDO:0800096"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neonatal severe primary hyperparathyroidism","secondary_identifiers":["GARD:2838","OMIM:239200","SCTID:715218009","MESH:C563375","icd11.foundation:1929875111","MEDGEN:331326","NCIT:C131853","UMLS:C1832615"],"synonyms":[{"name":"NSHPT","type":"exact"},{"name":"Nsph","type":"related"},{"name":"hyperparathyroidism, neonatal","type":"exact"},{"name":"hyperparathyroidism, neonatal severe","type":"related"},{"name":"hyperparathyroidism, neonatal severe primary","type":"related"},{"name":"neonatal severe hyperparathyroidism","type":"related"}],"termid":"MONDO:0009397","xrefs":{"Monarch":{"xref_id":"0009397"}}}


id: PBO:0081698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 620","termid":"PBO:0081698"}


id: PBO:0069863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1150, pseudogene","termid":"PBO:0069863"}


id: GO:0100020
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates transport.","definition_xrefs":["GOC:cjm","GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transport by transcription from RNA polymerase II promoter (obsolete GO:0100020)","termid":"GO:0100020"}


id: PBO:0071827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 22","termid":"PBO:0071827"}


id: GO:0031252
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The area of a motile cell closest to the direction of movement.","definition_xrefs":["GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cell leading edge","synonyms":[{"name":"front of cell","type":"exact"},{"name":"leading edge of cell","type":"exact"}],"termid":"GO:0031252"}


id: PBO:0003213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isocitrate dehydrogenase (NAD+) subunit 2","termid":"PBO:0003213"}


id: CHEBI:45979
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiabendazole","termid":"CHEBI:45979"}


id: PBO:0004564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine-rich repeat protein Sog2 (predicted)","termid":"PBO:0004564"}


id: GO:0090024
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of granulocyte chemotaxis","termid":"GO:0071623"},{"relation_name":"is_a","term_name":"regulation of neutrophil chemotaxis","termid":"GO:0090022"},{"relation_name":"is_a","term_name":"negative regulation of neutrophil migration","termid":"GO:1902623"},{"relation_name":"negatively_regulates","term_name":"neutrophil chemotaxis","termid":"GO:0030593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of neutrophil chemotaxis","termid":"GO:0090024"}


id: PBO:0003982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"type II protein arginine N-methyltransferase Skb1","termid":"PBO:0003982"}


id: PBO:0083119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA Topoisomerase III; conserved protein that functions in a complex with Sgs1p and Rmi1p to relax single-stranded negatively-supercoiled DNA preferentially; DNA catenation/decatenation activity is stimulated by RPA and Sgs1p-Top3p-Rmi1p; involved in telomere stability and regulation of mitotic recombination","termid":"PBO:0083119"}


id: PBO:0052450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kruppel like factor 3 pseudogene 1","termid":"PBO:0052450"}


id: GO:2000049
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell-cell adhesion mediated by cadherin.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell-cell adhesion","termid":"GO:0022409"},{"relation_name":"is_a","term_name":"regulation of cell-cell adhesion mediated by cadherin","termid":"GO:2000047"},{"relation_name":"positively_regulates","term_name":"cell-cell adhesion mediated by cadherin","termid":"GO:0044331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell-cell adhesion mediated by cadherin","termid":"GO:2000049"}


id: GO:0030544
data:
  {"annotated_genes":["SJAG_01160","SJAG_00436","SJAG_03135","SJAG_01914","SJAG_03094","SJAG_00403","SJAG_03955"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[59411,67916,68203,72552,79590,81481,81587],"is_not":false,"summary":null,"term":"GO:0030544"}]},"cv_name":"molecular_function","definition":"Binding to a Hsp70 protein, heat shock proteins around 70kDa in size.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heat shock protein binding","termid":"GO:0031072"},{"relation_name":"is_a","term_name":"protein-folding chaperone binding","termid":"GO:0051087"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00403":null,"SJAG_00436":null,"SJAG_01160":null,"SJAG_01914":null,"SJAG_03094":null,"SJAG_03135":null,"SJAG_03955":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"Hsp70 protein binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"termid":"GO:0030544","terms_by_termid":{"GO:0030544":null}}


id: PBO:0108889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL7L1 pseudogene 2","termid":"PBO:0108889"}


id: MONDO:0012560
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete invasive pneumococcal disease, recurrent isolated, 1 (obsolete MONDO:0012560)","secondary_identifiers":["OMIM:610799"],"termid":"MONDO:0012560","xrefs":{"Monarch":{"xref_id":"0012560"}}}


id: MONDO:0030680
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A dilated cardiomyopathy that is characterized by refractory ventricular arrhythmias and severe heart failure and that has material basis in homozygous mutation in the BAG5 gene on chromosome 14q32.","definition_xrefs":["DOID:0081162"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial isolated dilated cardiomyopathy","termid":"MONDO:0700335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"cardiomyopathy, dilated, 2F","secondary_identifiers":["OMIM:619747","UMLS:C5676917","MEDGEN:1802616"],"synonyms":[{"name":"CMD2F","type":"exact"},{"name":"cardiomyopathy, dilated, 2F","type":"exact"}],"termid":"MONDO:0030680","xrefs":{"Monarch":{"xref_id":"0030680"}}}


id: PBO:0072882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET binding factor 1 pseudogene 1","termid":"PBO:0072882"}


id: MONDO:0011457
data:
  {"annotated_genes":["SJAG_05373","SJAG_04190","SJAG_04410"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87151],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008842"},{"annotations":[87089],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0024557"},{"annotations":[88014],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014399"}]},"cv_name":"mondo","definition":"An autosomal recessive condition caused by mutation(s) in the MRE11A gene, encoding double-strand break repair protein MRE11. It is characterized by progressive cerebellar degeneration resulting in ataxia and oculomotor apraxia.","definition_xrefs":["NCIT:C132224"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"skin vascular disease","termid":"MONDO:0019293"},{"relation_name":"is_a","term_name":"inherited neurodegenerative disorder","termid":"MONDO:0024237"}],"gene_count":3,"genes_by_uniquename":{"SJAG_04190":null,"SJAG_04410":null,"SJAG_05373":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"ataxia-telangiectasia-like disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["icd11.foundation:242329289","OMIMPS:604391","SCTID:700058006","MESH:C565779","UMLS:C1858391","MEDGEN:348929","ICD9:334.8"],"synonyms":[{"name":"ATLD","type":"exact"},{"name":"ATLD1","type":"related"},{"name":"ataxia - telangiectasia-like disorder","type":"exact"},{"name":"ataxia-telangiectasia-like disorder 1","type":"related"},{"name":"ataxia-telangiectasia-like disorder type 1","type":"exact"}],"termid":"MONDO:0011457","terms_by_termid":{"MONDO:0008842":null,"MONDO:0014399":null,"MONDO:0024557":null},"xrefs":{"Monarch":{"xref_id":"0011457"}}}


id: PBO:0076923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor CP2 like 1","termid":"PBO:0076923"}


id: PBO:0030338
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_phosphorylation_during_cellular_response_to_hydrogen_peroxide","termid":"PBO:0030338"}


id: GO:0008412
data:
  {"annotated_genes":["SJAG_06603"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79067],"is_not":false,"summary":null,"term":"GO:0008412"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-hydroxybenzoate + an all-trans-polyprenyl diphosphate = a 4-hydroxy-3-all-trans-polyprenylbenzoate + diphosphate.","definition_xrefs":["RHEA:44504"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prenyltransferase activity","termid":"GO:0004659"}],"gene_count":1,"genes_by_uniquename":{"SJAG_06603":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016765","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"4-hydroxybenzoate polyprenyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["EC:2.5.1.39","MetaCyc:RXN-11368","GO:0048044","GO:0000043","GO:0048043"],"synonyms":[{"name":"4-HB polyprenyltransferase activity","type":"exact"},{"name":"4-hydroxybenzoate nonaprenyltransferase activity","type":"narrow"},{"name":"PHB polyprenyl diphosphate transferase activity","type":"exact"},{"name":"para-hydroxybenzoate transferase activity","type":"exact"},{"name":"para-hydroxybenzoate-polyprenyl diphosphate transferase activity","type":"exact"},{"name":"para-hydroxybenzoate:polyprenyltransferase activity","type":"exact"}],"termid":"GO:0008412","terms_by_termid":{"GO:0008412":null}}


id: MONDO:1010784
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pyoderma that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyoderma, non-human animal","termid":"MONDO:1010142"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyoderma, dog","secondary_identifiers":["OMIA:001877-9615"],"termid":"MONDO:1010784","xrefs":{"Monarch":{"xref_id":"1010784"}}}


id: GO:0046129
data:
  {"annotated_genes":["SJAG_01070","SJAG_03881","SJAG_00134","SJAG_03096","SJAG_06634","SJAG_00044","SJAG_01859"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90651],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046086"},{"annotations":[118682],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006169"},{"annotations":[71590],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006190"},{"annotations":[67824,75121,95532,62491],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006166"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleoside biosynthetic process","termid":"GO:0042451"},{"relation_name":"is_a","term_name":"ribonucleoside biosynthetic process","termid":"GO:0042455"},{"relation_name":"is_a","term_name":"purine ribonucleoside metabolic process","termid":"GO:0046128"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00044":null,"SJAG_00134":null,"SJAG_01070":null,"SJAG_01859":null,"SJAG_03096":null,"SJAG_03881":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"purine ribonucleoside biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null},"synonyms":[{"name":"purine ribonucleoside anabolism","type":"exact"},{"name":"purine ribonucleoside biosynthesis","type":"exact"},{"name":"purine ribonucleoside formation","type":"exact"},{"name":"purine ribonucleoside synthesis","type":"exact"}],"termid":"GO:0046129","terms_by_termid":{"GO:0006166":null,"GO:0006169":null,"GO:0006190":null,"GO:0046086":null}}


id: PBO:0030535
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_GDP_binding","termid":"PBO:0030535"}


id: GO:0047677
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: arachidonate + O2 = (5Z,8R,9E,11Z,14Z)-8-hydroperoxyicosa-5,9,11,14-tetraenoate.","definition_xrefs":["RHEA:14985","EC:1.13.11.40"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"arachidonate 8(R)-lipoxygenase activity","secondary_identifiers":["KEGG_REACTION:R01594","MetaCyc:ARACHIDONATE-8-LIPOXYGENASE-RXN"],"synonyms":[{"name":"8(R)-lipoxygenase activity","type":"related"},{"name":"8-lipoxygenase activity","type":"narrow"},{"name":"arachidonate 8-lipoxygenase activity","type":"broad"},{"name":"arachidonate:oxygen 8-oxidoreductase activity","type":"related"}],"termid":"GO:0047677"}


id: GO:0010427
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to abscisic acid, a plant hormone that regulates aspects of plant growth.","definition_xrefs":["PMID:17347412"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid binding","termid":"GO:0019840"},{"relation_name":"is_a","term_name":"monocarboxylic acid binding","termid":"GO:0033293"},{"relation_name":"is_a","term_name":"hormone binding","termid":"GO:0042562"},{"relation_name":"is_a","term_name":"alcohol binding","termid":"GO:0043178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0008289","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"abscisic acid binding","synonyms":[{"name":"ABA binding","type":"related"},{"name":"abscisate binding","type":"related"}],"termid":"GO:0010427"}


id: PBO:0030358
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cytokinesis_during_cellular_hyperosmotic_response","termid":"PBO:0030358"}


id: FYPO:0006983
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the termination of RNA transcription RNA polymerase III from a DNA template is abnormal.","definition_xrefs":["PomBase:mah","GO:0006386"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transcription termination","termid":"FYPO:0003556"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000294"],"is_obsolete":false,"name":"abnormal termination of RNA polymerase III transcription","synonyms":[{"name":"abnormal RNA polymerase III transcription termination","type":"exact"},{"name":"abnormal termination of RNA polymerase III transcription during mitotic cell cycle","type":"related"},{"name":"abnormal termination of RNA polymerase III transcription during vegetative growth","type":"exact"},{"name":"abnormal transcription termination from Pol III promoter","type":"exact"},{"name":"abnormal transcription termination from RNA polymerase III promoter","type":"exact"}],"termid":"FYPO:0006983"}


id: PBO:0074571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA host gene 27","termid":"PBO:0074571"}


id: MONDO:0001918
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"excessive tearing","termid":"MONDO:0001793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"epiphora due to excess lacrimation","secondary_identifiers":["DOID:14244","MEDGEN:509861","ICD10CM:H04.21","ICD9:375.21","icd11.foundation:255772124","SCTID:31788005","UMLS:C0155233"],"termid":"MONDO:0001918","xrefs":{"Monarch":{"xref_id":"0001918"}}}


id: GO:0031745
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a cysteinyl leukotriene receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor binding","termid":"GO:0001664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"cysteinyl leukotriene receptor binding","synonyms":[{"name":"cysteinyl leukotriene receptor ligand","type":"narrow"}],"termid":"GO:0031745"}


id: GO:0006821
data:
  {"annotated_genes":["SJAG_01168","SJAG_03401","SJAG_02463"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75095,72099,78912],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902476"}]},"cv_name":"biological_process","definition":"The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic anion transport","termid":"GO:0006820"},{"relation_name":"is_a","term_name":"inorganic anion transport","termid":"GO:0015698"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01168":null,"SJAG_02463":null,"SJAG_03401":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"chloride transport","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0006821","terms_by_termid":{"GO:1902476":null}}


id: MONDO:1010714
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Multiple acyl-coa dehydrogenase deficiency that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple acyl-coa dehydrogenase deficiency, non-human animal","termid":"MONDO:1010106"},{"relation_name":"is_a","term_name":"hypertrophic cardiomyopathy, domestic cat","termid":"MONDO:1010459"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multiple acyl-CoA dehydrogenase deficiency, domestic cat","secondary_identifiers":["OMIA:001457-9685"],"termid":"MONDO:1010714","xrefs":{"Monarch":{"xref_id":"1010714"}}}


id: GO:0032835
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the glomerulus over time from its initial formation until its mature state. The glomerulus is a capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the vertebrate kidney. The glomerulus is part of the nephron and is restricted to one body segment.","definition_xrefs":["GOC:mah","GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"nephron development","termid":"GO:0072006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glomerulus development","synonyms":[{"name":"glomerular development","type":"exact"}],"termid":"GO:0032835"}


id: PBO:0089201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human REX1BD ortholog, implicated in DNA repair","termid":"PBO:0089201"}


id: PBO:0074257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier organic anion transporter family member 2B1","termid":"PBO:0074257"}


id: GO:0034398
data:
  {"annotated_genes":["SJAG_03299","SJAG_03048","SJAG_01777","SJAG_03092","SJAG_01263","SJAG_01601","SJAG_03680","SJAG_01067","SJAG_01584"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74861,77266],"is_not":false,"summary":null,"term":"GO:0034398"},{"annotations":[65476,91537],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070197"},{"annotations":[115825],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044821"},{"annotations":[77742,100908,91539,106911,118713],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044820"},{"annotations":[104168],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1904537"}]},"cv_name":"biological_process","definition":"The process in which a telomere is maintained in a specific location at the nuclear periphery.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telomere localization","termid":"GO:0034397"}],"gene_count":9,"genes_by_uniquename":{"SJAG_01067":null,"SJAG_01263":null,"SJAG_01584":null,"SJAG_01601":null,"SJAG_01777":null,"SJAG_03048":null,"SJAG_03092":null,"SJAG_03299":null,"SJAG_03680":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"telomere tethering at nuclear periphery","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0034398","terms_by_termid":{"GO:0034398":null,"GO:0044820":null,"GO:0044821":null,"GO:0070197":null,"GO:1904537":null}}


id: PR:O94460
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A queuine tRNA-ribosyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11962:SF0","PRO:DNx","OMA:SCHPO00369"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"queuine tRNA-ribosyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.19c","secondary_identifiers":["UniProtKB:O94460"],"synonyms":[{"name":"Spom972h-QTRT1","type":"exact"},{"name":"guanine insertion enzyme (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tRNA-guanine transglycosylase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94460"}


id: PBO:0069279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 535, pseudogene","termid":"PBO:0069279"}


id: PBO:0070237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 175 pseudogene","termid":"PBO:0070237"}


id: GO:0090190
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of branching involved in ureteric bud morphogenesis, the process in which the branching structure of the ureteric bud is generated and organized. The ureteric bud is an epithelial tube that grows out from the metanephric duct. The bud elongates and branches to give rise to the ureter and kidney collecting tubules.","definition_xrefs":["GOC:yaf","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of branching involved in ureteric bud morphogenesis","termid":"GO:0090189"},{"relation_name":"is_a","term_name":"positive regulation of morphogenesis of an epithelium","termid":"GO:1905332"},{"relation_name":"positively_regulates","term_name":"branching involved in ureteric bud morphogenesis","termid":"GO:0001658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of branching involved in ureteric bud morphogenesis","termid":"GO:0090190"}


id: MOD:00248
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-cysteine residue and an L-phenylalanine residue to form L-phenylalanine thiazole-4-carboxylic acid.","definition_xrefs":["PubMed:1880060","RESID:AA0243"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiazole/thiazoline ring crosslinked residues","termid":"MOD:01420"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"},{"relation_name":"is_a","term_name":"crosslinked L-phenylalanine residue","termid":"MOD:02053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"L-phenylalanine thiazole-4-carboxylic acid","synonyms":[{"name":"2-[(1S)-1-amino-2-phenylethyl]-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"2-[1-azanyl-2-phenylethyl]-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"CROSSLNK Thiazole-4-carboxylic acid (Phe-Cys)","type":"exact"},{"name":"L-phenylalanine thiazole-4-carboxylic acid","type":"exact"}],"termid":"MOD:00248"}


id: GO:1903544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a butyrate stimulus.","definition_xrefs":["GOC:TermGenie","GO_REF:0000071","GOC:mr","PMID:9734870"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to fatty acid","termid":"GO:0070542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to butyrate","termid":"GO:1903544"}


id: FYPO:0005775
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to acetaldehyde. Cells stop growing (and may die) at a concentration of acetaldehyde that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitive to DNA damaging agents","termid":"FYPO:0000266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0000139","FYPO:0000003","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to acetaldehyde","synonyms":[{"name":"hypersensitive to acetaldehyde","type":"exact"},{"name":"sensitive to acetaldehyde during mitotic cell cycle","type":"related"},{"name":"sensitive to acetaldehyde during vegetative growth","type":"exact"}],"termid":"FYPO:0005775"}


id: PBO:0070873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L15 pseudogene 4","termid":"PBO:0070873"}


id: GO:0007517
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work.","definition_xrefs":["ISBN:0198506732","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"},{"relation_name":"is_a","term_name":"muscle structure development","termid":"GO:0061061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"muscle organ development","termid":"GO:0007517"}


id: PBO:0029228
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_nocodazole","termid":"PBO:0029228"}


id: MONDO:0011881
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any striate palmoplantar keratoderma in which the cause of the disease is a mutation in the KRT1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striate palmoplantar keratoderma","termid":"MONDO:0018865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"keratosis palmoplantaris striata 3","secondary_identifiers":["MESH:C536163","OMIM:607654","UMLS:C2931123","MEDGEN:418996","GARD:9173","DOID:0081110"],"synonyms":[{"name":"KRT1 striate palmoplantar keratoderma","type":"exact"},{"name":"PPKS3","type":"related"},{"name":"keratoderma palmoplantar striate form 3","type":"related"},{"name":"keratoderma, palmoplantar, striate form 3","type":"related"},{"name":"keratosis palmoplantaris striata III","type":"related"},{"name":"keratosis palmoplantaris striata type 3","type":"exact"},{"name":"striate palmoplantar keratoderma 3","type":"related"},{"name":"striate palmoplantar keratoderma caused by mutation in KRT1","type":"exact"}],"termid":"MONDO:0011881","xrefs":{"Monarch":{"xref_id":"0011881"}}}


id: SO:0000311
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":".","definition_xrefs":["SO:ma"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000311 computed_feature_by_similarity (obsolete SO:0000311)","termid":"SO:0000311"}


id: MONDO:0001177
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"anus disorder","termid":"MONDO:0002519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"anorectal stricture","secondary_identifiers":["ICD9:569.2","DOID:11014","SCTID:197216007","MEDGEN:57619","UMLS:C0156183","MESH:C537771"],"synonyms":[{"name":"stenosis of rectum and anus","type":"exact"}],"termid":"MONDO:0001177","xrefs":{"Monarch":{"xref_id":"0001177"}}}


id: MONDO:0009369
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Non-immune hydrops fetalis (NIHF), a form of HF, is a severe fetal condition defined as the excessive accumulation of fetal fluid within the fetal extravascular compartments and body cavities, and is the end-stage of a wide variety of disorders.","definition_xrefs":["Orphanet:363999"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrops fetalis","termid":"MONDO:0015193"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-immune hydrops fetalis","secondary_identifiers":["GARD:17580","OMIM:236750","icd11.foundation:1182287637","ICD9:778.0","MEDGEN:105327","NCIT:C111905","SCTID:276509008","UMLS:C0455988"],"synonyms":[{"name":"Haemoglobin H hydrops fetalis syndrome","type":"related"},{"name":"Hemoglobin H hydrops fetalis syndrome","type":"related"},{"name":"NIHF","type":"related"},{"name":"hydrops fetalis, Alpha-thalassemia-related","type":"related"},{"name":"hydrops fetalis, nonimmune","type":"related"},{"name":"non-immune HF","type":"exact"},{"name":"non-immune fetal edema","type":"exact"},{"name":"non-immune fetal hydrops","type":"exact"},{"name":"non-immune foetal hydrops","type":"exact"},{"name":"non-immune foetal oedema","type":"exact"}],"termid":"MONDO:0009369","xrefs":{"Monarch":{"xref_id":"0009369"}}}


id: PBO:0084503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meiosis-specific protein that localizes to chromosomes; prevents synapsis between nonhomologous chromosomes and ensures synapsis between homologs; forms complex with Mnd1p to promote homolog pairing and meiotic double-strand break repair; heterodimer of Hop2p-Mnd1p stimulates the Dmc1p-mediated strand invasion","termid":"PBO:0084503"}


id: GO:0072160
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the nephron tubule as it progresses from its formation to the mature state.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation involved in kidney development","termid":"GO:0035850"},{"relation_name":"part_of","term_name":"nephron tubule development","termid":"GO:0072080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nephron tubule epithelial cell differentiation","termid":"GO:0072160"}


id: PBO:0046388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E1A binding protein p300","termid":"PBO:0046388"}


id: PBO:0063958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol-4-phosphate 5-kinase type 1 beta","termid":"PBO:0063958"}


id: GO:0150178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phosphatidylserine metabolic process.","definition_xrefs":["GOC:aruk","GOC:bc","PMID:30074985"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phospholipid metabolic process","termid":"GO:1903725"},{"relation_name":"regulates","term_name":"phosphatidylserine metabolic process","termid":"GO:0006658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"regulation of phosphatidylserine metabolic process","termid":"GO:0150178"}


