# terms

id: GO:0018031
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a palmitoyl group to the N6 nitrogen atom on a lysine residue of a peptide or protein molecule.","definition_xrefs":["PMID:29074776","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acyltransferase activity","termid":"GO:0016410"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0140096","GO:0003824","GO:0003674","GO:0016746"],"is_obsolete":false,"name":"peptidyl-lysine N6-palmitoyltransferase activity","termid":"GO:0018031"}


id: MONDO:0016560
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ptosis-syndactyly-learning difficulties syndrome","secondary_identifiers":["Orphanet:238766"],"termid":"MONDO:0016560","xrefs":{"Monarch":{"xref_id":"0016560"}}}


id: PBO:0085887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; involved in maintenance of proper telomere length; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus; forms nuclear foci upon DNA replication stress","termid":"PBO:0085887"}


id: GO:1901217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of holin activity.","definition_xrefs":["GOC:TermGenie","GOC:bm"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of holin activity (obsolete GO:1901217)","termid":"GO:1901217"}


id: GO:0071072
data:
  {"annotated_genes":["SJAG_03940","SJAG_00053","SJAG_02380","SJAG_01187","SJAG_01906","SJAG_03170"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111576,114603],"is_not":false,"summary":null,"term":"GO:0071072"},{"annotations":[92222,59784],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902647"},{"annotations":[113225,117342],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001211"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phospholipids.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lipid biosynthetic process","termid":"GO:0051055"},{"relation_name":"is_a","term_name":"regulation of phospholipid biosynthetic process","termid":"GO:0071071"},{"relation_name":"is_a","term_name":"negative regulation of phospholipid metabolic process","termid":"GO:1903726"},{"relation_name":"negatively_regulates","term_name":"phospholipid biosynthetic process","termid":"GO:0008654"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00053":null,"SJAG_01187":null,"SJAG_01906":null,"SJAG_02380":null,"SJAG_03170":null,"SJAG_03940":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"negative regulation of phospholipid biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"down regulation of phospholipid biosynthetic process","type":"exact"},{"name":"down-regulation of phospholipid biosynthetic process","type":"exact"},{"name":"downregulation of phospholipid biosynthetic process","type":"exact"},{"name":"inhibition of phospholipid biosynthetic process","type":"narrow"},{"name":"negative regulation of phospholipid anabolism","type":"exact"},{"name":"negative regulation of phospholipid biosynthesis","type":"exact"},{"name":"negative regulation of phospholipid formation","type":"exact"},{"name":"negative regulation of phospholipid synthesis","type":"exact"}],"termid":"GO:0071072","terms_by_termid":{"GO:0071072":null,"GO:1902647":null,"GO:2001211":null}}


id: GO:0004660
data:
  {"annotated_genes":["SJAG_04923","SJAG_02583"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73008,75272],"is_not":false,"summary":null,"term":"GO:0004660"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-cysteinyl-[protein] + (2E,6E)-farnesyl diphosphate = S-(2E,6E)-farnesyl-L-cysteinyl-[protein] + diphosphate.","definition_xrefs":["PMID:8621375","RHEA:13345"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein prenyltransferase activity","termid":"GO:0008318"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02583":null,"SJAG_04923":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016765"}],"interesting_parent_ids":["GO:0140096","GO:0003674","GO:0016765","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"protein farnesyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:RXN-17573","Reactome:R-HSA-9647978","Reactome:R-HSA-2530501","EC:2.5.1.58","GO:0018223"],"synonyms":[{"name":"CAAX farnesyltransferase activity","type":"narrow"},{"name":"FTase activity","type":"related"},{"name":"farnesyl-diphosphate:protein-cysteine farnesyltransferase activity","type":"related"},{"name":"protein-cysteine farnesyltransferase activity","type":"exact"}],"termid":"GO:0004660","terms_by_termid":{"GO:0004660":null}}


id: MONDO:0015077
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete adrenal/paraganglial tumor (obsolete MONDO:0015077)","termid":"MONDO:0015077","xrefs":{"Monarch":{"xref_id":"0015077"}}}


id: PBO:0016069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor zf-C2H2 type","termid":"PBO:0016069"}


id: MONDO:1012171
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"muscle contracture and chondrodysplasia, non-human animal","termid":"MONDO:1011947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"muscle contracture and chondrodysplasia, cattle","secondary_identifiers":["OMIA:000675-9913"],"termid":"MONDO:1012171","xrefs":{"Monarch":{"xref_id":"1012171"}}}


id: PBO:0081452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 319","termid":"PBO:0081452"}


id: PBO:0046057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 3 subunit H","termid":"PBO:0046057"}


id: GO:0102741
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1,7-dimethylxanthine + S-adenosyl-L-methionine = H+ + caffeine + S-adenosyl-L-homocysteine. Also converts theobromine to caffeine and 7-methylxanthine to theobromine.","definition_xrefs":["EC:2.1.1.160"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016741","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"caffeine synthase activity","synonyms":[{"name":"3N-methyltransferase activity","type":"related"},{"name":"dimethylxanthine methyltransferase activity","type":"related"},{"name":"paraxanthine:S-adenosyl-L-methionine 3-N-methyltransferase activity","type":"narrow"},{"name":"theobromine:S-adenosyl-L-methionine 1-N-methyltransferase activity","type":"narrow"}],"termid":"GO:0102741"}


id: PR:Q9P7H3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A prohibitin that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01972","PANTHER:PTHR23222:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prohibitin-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1782.06c","secondary_identifiers":["UniProtKB:Q9P7H3"],"synonyms":[{"name":"Spom972h-PHB","type":"exact"}],"termid":"PR:Q9P7H3"}


id: PATO:0000829
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000829 absolute visual ability value (obsolete PATO:0000829)","termid":"PATO:0000829"}


id: PBO:0058918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA let-7a-1","termid":"PBO:0058918"}


id: PBO:0064182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group XI, pseudogene","termid":"PBO:0064182"}


id: GO:0043665
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The soluble material inside the peribacteroid membrane, but outside of the bacteroid, within a bacteroid-containing symbiosome of a host cell.","definition_xrefs":["GOC:cc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"},{"relation_name":"part_of","term_name":"host bacteroid-containing symbiosome","termid":"GO:0043663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host peribacteroid fluid","termid":"GO:0043665"}


id: GO:0085024
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism (symbiont) effects a change in the structure or function of its host organism, mediated by a substance secreted by the Sec complex in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modification by symbiont of host morphology or physiology via protein secreted by Sec complex (obsolete GO:0085024)","synonyms":[{"name":"modification by symbiont of host morphology or physiology via protein secreted by the Sec secretion system","type":"exact"}],"termid":"GO:0085024"}


id: FYPO:0006102
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the cell does not contain detectable cytoplasmic microtubules during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic microtubules absent from cell","termid":"FYPO:0004702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002399","FYPO:0005447","FYPO:0000054","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"interphase microtubules absent from cell","synonyms":[{"name":"absent interphase microtubules","type":"exact"},{"name":"cytoplasmic microtubules absent from cell during mitotic interphase","type":"exact"},{"name":"interphase cytoplasmic microtubules absent from cell","type":"exact"},{"name":"interphase microtubules absent from cell during mitotic cell cycle","type":"related"},{"name":"interphase microtubules absent from cell during vegetative growth","type":"exact"}],"termid":"FYPO:0006102"}


id: MONDO:0015942
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Frontometaphyseal dysplasia (FMD) belongs to the otopalatodigital syndrome spectrum disorder and is characterized by anomalous ossification and skeletal patterning of the axial and appendicular skeleton, facial dysmorphism and conductive and sensorineural hearing loss.","definition_xrefs":["Orphanet:1826"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"},{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"otopalatodigital syndrome spectrum disorder","termid":"MONDO:0018233"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frontometaphyseal dysplasia","secondary_identifiers":["icd11.foundation:1767187670","MEDGEN:82703","SCTID:62803002","DOID:0111785","UMLS:C0265293","ICD9:759.89","MESH:C538064","GARD:826","OMIMPS:305620"],"synonyms":[{"name":"FMD","type":"related"},{"name":"frontometaphyseal dysplasia","type":"exact"}],"termid":"MONDO:0015942","xrefs":{"Monarch":{"xref_id":"0015942"}}}


id: GO:0160127
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that rescues stalled ribosomes by removing the covalent cross-link between RNA and a protein.","definition_xrefs":["PMID:37951216","PMID:37951215"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rescue of stalled ribosome","termid":"GO:0072344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"protein-RNA covalent cross-linking repair","termid":"GO:0160127"}


id: GO:0008770
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: [acyl-carrier protein] + H2O = 4'-phosphopantetheine + apoprotein.","definition_xrefs":["EC:3.1.4.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoric diester hydrolase activity","termid":"GO:0008081"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016788","GO:0140096","GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"[acyl-carrier-protein] phosphodiesterase activity","secondary_identifiers":["MetaCyc:3.1.4.14-RXN","RHEA:20537"],"synonyms":[{"name":"ACP hydrolyase activity","type":"related"},{"name":"ACP phosphodiesterase activity","type":"exact"},{"name":"AcpH","type":"related"},{"name":"[acyl-carrier protein] phosphodiesterase activity","type":"exact"},{"name":"[acyl-carrier-protein] 4'-pantetheine-phosphohydrolase activity","type":"related"},{"name":"acyl-carrier-protein 4'-pantetheine-phosphohydrolase activity","type":"related"},{"name":"acyl-carrier-protein phosphodiesterase activity","type":"related"},{"name":"holo-acyl-carrier-protein 4'-pantetheine-phosphohydrolase activity","type":"related"}],"termid":"GO:0008770"}


id: MONDO:0022311
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Crouzon syndrome","termid":"MONDO:0007405"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"cote katsantoni syndrome","secondary_identifiers":["GARD:1554","MESH:C536449","MEDGEN:419356","UMLS:C2931195"],"synonyms":[{"name":"ectodermal dysplasia osteosclerosis","type":"related"}],"termid":"MONDO:0022311","xrefs":{"Monarch":{"xref_id":"0022311"}}}


id: MONDO:0010393
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any non-syndromic X-linked intellectual disability in which the cause of the disease is a mutation in the BRWD3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic X-linked intellectual disability","termid":"MONDO:0019181"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intellectual disability, X-linked 93","secondary_identifiers":["MEDGEN:410164","OMIM:300659","UMLS:C1970841","DOID:0112045","MESH:C567066"],"synonyms":[{"name":"BRWD3 non-syndromic X-linked intellectual disability","type":"exact"},{"name":"MRX93","type":"related"},{"name":"intellectual developmental disorder, X-linked 93, X-linked recessive","type":"exact"},{"name":"intellectual disability, X-linked 93","type":"exact"},{"name":"intellectual disability, X-linked type 93","type":"exact"},{"name":"intellectual disability, X-linked, with macrocephaly","type":"related"},{"name":"mental retardation, X-linked 93","type":"related"},{"name":"mental retardation, X-linked type 93","type":"exact"},{"name":"mental retardation, X-linked, with macrocephaly","type":"related"},{"name":"non-syndromic X-linked intellectual disability caused by mutation in BRWD3","type":"exact"}],"termid":"MONDO:0010393","xrefs":{"Monarch":{"xref_id":"0010393"}}}


id: PBO:0079125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"teashirt zinc finger homeobox 1","termid":"PBO:0079125"}


id: PBO:0087929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Trans-golgi network aminophospholipid translocase (flippase); P4-type ATPase; maintains membrane lipid asymmetry in post-Golgi secretory vesicles; contributes to clathrin-coated vesicle formation, endocytosis, protein trafficking between the Golgi and endosomal system and the cellular response to mating pheromone; autoinhibited by its C-terminal tail; localizes to the trans-Golgi network","termid":"PBO:0087929"}


id: GO:0001949
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized epidermal cell acquires the specialized features of a sebaceous gland cell.","definition_xrefs":["GOC:mgi_curators","PMID:15737203"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermal cell differentiation","termid":"GO:0009913"},{"relation_name":"part_of","term_name":"sebaceous gland development","termid":"GO:0048733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sebaceous gland cell differentiation","synonyms":[{"name":"sebocytes differentiation","type":"narrow"}],"termid":"GO:0001949"}


id: PBO:0026785
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_ascus_morphology","termid":"PBO:0026785"}


id: PBO:0084298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Invertase; sucrose hydrolyzing enzyme; a secreted, glycosylated form is regulated by glucose repression, and an intracellular, nonglycosylated enzyme is produced constitutively","termid":"PBO:0084298"}


id: GO:0004342
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glucosamine 6-phosphate + H2O = beta-D-fructose 6-phosphate + NH4.","definition_xrefs":["EC:3.5.99.6","RHEA:12172"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016810","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"glucosamine-6-phosphate deaminase activity","secondary_identifiers":["KEGG_REACTION:R00765","Reactome:R-HSA-6799604","MetaCyc:GLUCOSAMINE-6-P-DEAMIN-RXN"],"synonyms":[{"name":"2-amino-2-deoxy-D-glucose-6-phosphate aminohydrolase (ketol isomerizing)","type":"related"},{"name":"GlcN6P deaminase activity","type":"related"},{"name":"aminodeoxyglucosephosphate isomerase activity","type":"related"},{"name":"glucosamine phosphate deaminase activity","type":"related"},{"name":"glucosamine-6-phosphate isomerase activity","type":"related"},{"name":"glucosaminephosphate isomerase","type":"broad"},{"name":"phosphoglucosamine isomerase activity","type":"related"},{"name":"phosphoglucosaminisomerase activity","type":"related"}],"termid":"GO:0004342"}


id: GO:0008532
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl derivative + UDP-N-acetyl-alpha-D-glucosamine = an N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl derivative + H+ + UDP.","definition_xrefs":["RHEA:14389"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016757","GO:0003824"],"is_obsolete":false,"name":"N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity","secondary_identifiers":["Reactome:R-HSA-2025724","EC:2.4.1.149","MetaCyc:2.4.1.149-RXN"],"synonyms":[{"name":"GnTE activity","type":"related"},{"name":"N-acetyllactosamine beta(1,3)N-acetylglucosaminyltransferase activity","type":"related"},{"name":"UDP-GlcNAc:GalR, beta-D-3-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"UDP-GlcNAc:Galbeta-(1,4)-GlcNAcbeta-r-beta-(1,3)-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"UDP-GlcNAc:Galbeta-1,4-GlcNAcbeta-beta-1,3-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:beta-D-galactosyl-1,4-N-acetyl-D-glucosamine beta-1,3-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"galbeta1->4GlcNAc-R beta1->3 N-acetylglucosaminyltransferase activity","type":"related"},{"name":"poly-N-acetyllactosamine extension enzyme activity","type":"broad"},{"name":"uridine diphosphoacetylglucosamine-acetyllactosaminide beta-1,3-acetylglucosaminyltransferase","type":"broad"},{"name":"uridine diphosphoacetylglucosamine-acetyllactosaminide beta1->3-acetylglucosaminyltransferase","type":"broad"}],"termid":"GO:0008532"}


id: PBO:0116756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMARCE1 pseudogene 2","termid":"PBO:0116756"}


id: PBO:0087832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Thiamine pyrophosphokinase; phosphorylates thiamine to produce the coenzyme thiamine pyrophosphate (thiamine diphosphate)","termid":"PBO:0087832"}


id: MONDO:0006420
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A mucosa-associated lymphoid tissue lymphoma (MALT) that arises from the small intestine. The morphologic characteristics are similar to those seen in gastric MALT lymphomas, with the exception of the lymphoepithelial lesions that are less prominent in the small intestine.","definition_xrefs":["NCIT:C5635"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small intestine lymphoma","termid":"MONDO:0001852"},{"relation_name":"is_a","term_name":"spleen cancer","termid":"MONDO:0005966"},{"relation_name":"is_a","term_name":"MALT lymphoma","termid":"MONDO:0007650"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0005570","MONDO:0005046","MONDO:0004992"],"is_obsolete":false,"name":"small intestinal mucosa-associated lymphoid tissue lymphoma","secondary_identifiers":["UMLS:C1336004","MEDGEN:233452"],"synonyms":[{"name":"MALT lymphoma of small bowel","type":"exact"},{"name":"MALT lymphoma of small intestine","type":"exact"},{"name":"MALT lymphoma of the small bowel","type":"exact"},{"name":"MALT lymphoma of the small intestine","type":"exact"},{"name":"MALToma of small bowel","type":"exact"},{"name":"MALToma of small intestine","type":"exact"},{"name":"MALToma of the small bowel","type":"exact"},{"name":"MALToma of the small intestine","type":"exact"},{"name":"mucosa-associated lymphoid tissue lymphoma of small bowel","type":"exact"},{"name":"mucosa-associated lymphoid tissue lymphoma of small intestine","type":"exact"},{"name":"mucosa-associated lymphoid tissue lymphoma of the small bowel","type":"exact"},{"name":"mucosa-associated lymphoid tissue lymphoma of the small intestine","type":"exact"},{"name":"small bowel MALT lymphoma","type":"exact"},{"name":"small bowel MALToma","type":"exact"},{"name":"small bowel mucosa-associated lymphoid tissue lymphoma","type":"exact"},{"name":"small intestinal mucosa-associated lymphoid tissue lymphoma","type":"exact"},{"name":"small intestine MALT lymphoma","type":"exact"},{"name":"small intestine MALToma","type":"exact"},{"name":"small intestine mucosa-associated lymphoid tissue lymphoma","type":"exact"}],"termid":"MONDO:0006420","xrefs":{"Monarch":{"xref_id":"0006420"}}}


id: GO:0035195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A post-transcriptional gene silencing pathway in which regulatory microRNAs (miRNAs) elicit silencing of specific target genes. miRNAs are endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate protein production by either of two posttranscriptional mechanisms: endonucleolytic cleavage of the RNA (often mRNA) or mRNA translational repression, usually accompanied by poly-A tail shortening and subsequent degradation of the mRNA. miRNAs are present in all the animals and in plants, whereas siRNAs are present in lower animals and in plants.","definition_xrefs":["GOC:bc","PMID:28379604","PMID:23985560","PMID:15066275","GOC:rl","GOC:aruk","PMID:14744438","PMID:15066283","PMID:23209154"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory ncRNA-mediated post-transcriptional gene silencing","termid":"GO:0035194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"miRNA-mediated post-transcriptional gene silencing","secondary_identifiers":["Reactome:R-HSA-9759811"],"synonyms":[{"name":"gene silencing by miRNA","type":"exact"},{"name":"gene silencing by microRNA","type":"exact"},{"name":"miRNA-mediated gene silencing","type":"broad"},{"name":"microRNA-mediated gene silencing","type":"exact"}],"termid":"GO:0035195"}


id: PBO:0064765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase G pseudogene 1","termid":"PBO:0064765"}


id: PBO:0066649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras and Rab interactor 3","termid":"PBO:0066649"}


id: GO:0004208
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage at the terminal bond of the motif: Asp-Xaa-Xaa-Asp-Xaa. Enzymes with this function are members of the peptidase family C14 and they appear to function in the inactivation of proteins involved in cellular repair and homeostasis during the effector stage of apoptosis.","definition_xrefs":["ISBN:0120793709"],"gene_count":0,"genotype_count":0,"name":"obsolete caspase-3 activity (obsolete GO:0004208)","synonyms":[{"name":"caspase-3 activity","type":"exact"}],"termid":"GO:0004208"}


id: GO:0097368
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Establishment of a structure near the basement membrane in adjacent Sertoli cells of the seminiferous epithelium for maintaining spermatogenesis. The structure consists of tight junctions, basal ectoplasmic specializations, and desmosome-like junctions.","definition_xrefs":["GOC:sl","PMID:19509333","Wikipedia:Blood-testis_barrier"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Sertoli cell development","termid":"GO:0060009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of Sertoli cell barrier","synonyms":[{"name":"establishment of BTB","type":"exact"},{"name":"establishment of SCB","type":"exact"},{"name":"establishment of blood-testis barrier","type":"exact"}],"termid":"GO:0097368"}


id: GO:0006968
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A defense response that is mediated by cells.","definition_xrefs":["GOC:ebc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"defense response","termid":"GO:0006952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular defense response","secondary_identifiers":["GO:0002818","GO:0016066","GO:0016067"],"synonyms":[{"name":"cellular defence response","type":"exact"},{"name":"intracellular defence response","type":"narrow"},{"name":"intracellular defense response","type":"narrow"}],"termid":"GO:0006968"}


id: PBO:0048397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth arrest specific 2 like 3","termid":"PBO:0048397"}


id: PBO:0041931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromobox 2","termid":"PBO:0041931"}


id: GO:0120189
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the controlled release of bile acid from a cell or a tissue.","definition_xrefs":["GOC:rph","GOC:BHF_miRNA","GOC:BHF","PMID:22767443"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organic acid transport","termid":"GO:0032892"},{"relation_name":"is_a","term_name":"positive regulation of secretion","termid":"GO:0051047"},{"relation_name":"is_a","term_name":"regulation of bile acid secretion","termid":"GO:0120188"},{"relation_name":"positively_regulates","term_name":"bile acid secretion","termid":"GO:0032782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of bile acid secretion","termid":"GO:0120189"}


id: MONDO:0007521
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete egasyn (obsolete MONDO:0007521)","secondary_identifiers":["OMIM:129905"],"synonyms":[{"name":"egasyn","type":"exact"},{"name":"esterase 22","type":"related"}],"termid":"MONDO:0007521","xrefs":{"Monarch":{"xref_id":"0007521"}}}


id: MONDO:0060596
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with dysmorphic facies and distal limb anomalies","secondary_identifiers":["OMIM:617755","UMLS:C4540327","GARD:18513","DOID:0070514","MEDGEN:1627464"],"synonyms":[{"name":"NEDDFL","type":"related"},{"name":"neurodevelopmental disorder with dysmorphic facies and distal limb anomalies","type":"exact"}],"termid":"MONDO:0060596","xrefs":{"Monarch":{"xref_id":"0060596"}}}


id: PBO:0028413
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_acetate_level","termid":"PBO:0028413"}


id: GO:1904051
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein targeting to vacuole involved in autophagy.","definition_xrefs":["GOC:PARL","GOC:TermGenie","GOC:pad","PMID:22020285","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular protein transport","termid":"GO:0033157"},{"relation_name":"is_a","term_name":"regulation of vacuolar transport","termid":"GO:1903335"},{"relation_name":"is_a","term_name":"regulation of protein targeting","termid":"GO:1903533"},{"relation_name":"regulates","term_name":"protein targeting to vacuole involved in autophagy","termid":"GO:0071211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006605"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0006605"],"is_obsolete":false,"name":"regulation of protein targeting to vacuole involved in autophagy","termid":"GO:1904051"}


id: PBO:0031677
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_cell_cycle_arrest_in_response_to_pheromone","termid":"PBO:0031677"}


id: MONDO:0008248
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pigmented purpuric eruption","secondary_identifiers":["MEDGEN:96058","MESH:C537186","OMIM:172900","UMLS:C0406515","SCTID:20343006"],"synonyms":[{"name":"Schamberg disease","type":"related"},{"name":"Schamberg purpura","type":"related"},{"name":"familial pigmented purpuric eruption","type":"related"},{"name":"pigmented purpura","type":"related"},{"name":"pigmented purpuric dermatosis","type":"related"},{"name":"pigmented purpuric eruption","type":"exact"},{"name":"progressive pigmented purpura","type":"related"}],"termid":"MONDO:0008248","xrefs":{"Monarch":{"xref_id":"0008248"}}}


id: PBO:0068261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 45S pre-ribosomal N3","termid":"PBO:0068261"}


id: PBO:0053601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 630","termid":"PBO:0053601"}


id: MONDO:0010046
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive spastic paraplegia type 23 (SPG23) is a rare, complex type of hereditary spastic paraplegia that presents in childhood with progressive spastic paraplegia, associated with peripheral neuropathy, skin pigment abnormalities (i.e. vitiligo, hyperpigmentation, diffuse lentigines), premature graying of hair, and characteristic facies (i.e. thin with ''sharp'' features). The SPG23 phenotype has been mapped to a locus on chromosome 1q24-q32.","definition_xrefs":["Orphanet:101003"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complex hereditary spastic paraplegia","termid":"MONDO:0015150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"hereditary spastic paraplegia 23","secondary_identifiers":["DOID:0110774","MESH:C536859","SCTID:726608002","GARD:336","UMLS:C0796019","OMIM:270750","MEDGEN:167094"],"synonyms":[{"name":"DSTYK autosomal recessive complex spastic paraplegia","type":"exact"},{"name":"Lison syndrome","type":"exact"},{"name":"SPG 23","type":"related"},{"name":"SPG23","type":"exact"},{"name":"autosomal recessive complex spastic paraplegia caused by mutation in DSTYK","type":"exact"},{"name":"autosomal recessive spastic paraplegia type 23","type":"related"},{"name":"hereditary spastic paraplegia type 23","type":"exact"},{"name":"spastic paraparesis, vitiligo, premature graying, characteristic facies","type":"related"},{"name":"spastic paraparesis-vitiligo-premature graying-characteristic facies syndrome","type":"exact"},{"name":"spastic paraplegia 23","type":"exact"},{"name":"spastic paraplegia and pigmentary abnormalities","type":"related"},{"name":"spastic paraplegia vitiligo premature graying and characteristic facies","type":"related"},{"name":"spastic paraplegia vitiligo premature greying and characteristic facies","type":"related"},{"name":"spastic paraplegia with pigmentary abnormalities","type":"exact"}],"termid":"MONDO:0010046","xrefs":{"Monarch":{"xref_id":"0010046"}}}


id: MONDO:0007097
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"corneal dystrophy","termid":"MONDO:0018102"},{"relation_name":"is_a","term_name":"hereditary amyloidosis","termid":"MONDO:0018634"},{"relation_name":"is_a","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0021179"},{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005066","MONDO:0021179","MONDO:0005244"],"is_obsolete":false,"name":"Finnish type amyloidosis","secondary_identifiers":["SCTID:419398009","Orphanet:85448","NANDO:1201063","UMLS:C1622345","DOID:0050637","GARD:2339","MEDGEN:301243","ICD9:277.39","MESH:C537459","OMIM:105120"],"synonyms":[{"name":"AGel amyloidosis","type":"related"},{"name":"amyloid cranial neuropathy with lattice corneal dystrophy","type":"related"},{"name":"amyloidosis 5","type":"related"},{"name":"amyloidosis V","type":"related"},{"name":"amyloidosis due to mutant gelsolin","type":"related"},{"name":"amyloidosis, Finnish type","type":"related"},{"name":"amyloidosis, MERETOJA type","type":"exact"},{"name":"amyloidosis, Meretoja type","type":"related"},{"name":"cerebral amyloid angiopathy, Gsn-related","type":"related"},{"name":"corneal dystrophy, lattice type 2","type":"related"},{"name":"familial amyloid polyneuropathy type IV","type":"exact"},{"name":"familial amyloidosis, Finnish type","type":"exact"},{"name":"gelsolin amyloidosis","type":"exact"},{"name":"hereditary amyloidosis, Finnish type","type":"exact"},{"name":"hereditary gelsolin amyloidosis","type":"related"},{"name":"lattice corneal dystrophy type II Finnish","type":"related"},{"name":"lattice corneal dystrophy, type 2","type":"related"},{"name":"meretoja syndrome","type":"exact"},{"name":"meretoja type amyloidosis","type":"related"}],"termid":"MONDO:0007097","xrefs":{"Monarch":{"xref_id":"0007097"}}}


id: PBO:0041160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic transcription factor 3 pseudogene 15","termid":"PBO:0041160"}


id: GO:0005891
data:
  {"annotated_genes":["SJAG_05229"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[76192],"is_not":false,"summary":null,"term":"GO:0005891"}]},"cv_name":"cellular_component","definition":"A protein complex that forms a transmembrane channel through which calcium ions may pass in response to changes in membrane potential.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium channel complex","termid":"GO:0034704"},{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05229":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"voltage-gated calcium channel complex","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"voltage gated calcium channel complex","type":"exact"},{"name":"voltage-dependent calcium channel complex","type":"exact"},{"name":"voltage-sensitive calcium channel complex","type":"exact"}],"termid":"GO:0005891","terms_by_termid":{"GO:0005891":null}}


id: FYPO:0000278
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which cell population growth is decreased following spore germination, resulting in the formation of a smaller colony than normal in a given amount of time.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cell population growth","termid":"FYPO:0000046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0005447","FYPO:0002058","FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"decreased cell population growth following spore germination","synonyms":[{"name":"decreased growth following spore germination","type":"broad"},{"name":"reduced cell population growth following spore germination","type":"exact"},{"name":"slow cell population growth following spore germination","type":"narrow"},{"name":"spores produced smaller colonies","type":"related"}],"termid":"FYPO:0000278"}


id: MONDO:0016465
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete multiple intestinal atresia (obsolete MONDO:0016465)","termid":"MONDO:0016465","xrefs":{"Monarch":{"xref_id":"0016465"}}}


id: MONDO:0009259
data:
  {"annotated_genes":["SJAG_00988"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87691],"is_not":false,"summary":null,"term":"MONDO:0009259"}]},"cv_name":"mondo","definition":"A disorder that is principally characterized by hemolytic anemia, (usually rather mild), however, the presence of neurological symptoms has also been reported.","definition_xrefs":["Orphanet:33574"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nonspherocytic hemolytic anemia","termid":"MONDO:0006506"},{"relation_name":"is_a","term_name":"anemia due to enzyme disorder","termid":"MONDO:0020584"},{"relation_name":"is_a","term_name":"inherited glutathione metabolism disease","termid":"MONDO:0040566"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00988":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0019241"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570","MONDO:0005066","MONDO:0019241"],"is_obsolete":false,"name":"gamma-glutamylcysteine synthetase deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C565557","UMLS:C1856603","ICD9:270.8","OMIM:230450","GARD:16631","SCTID:36799008","DOID:0111681","MEDGEN:347272"],"synonyms":[{"name":"anemia, congenital, nonspherocytic hemolytic, 7","type":"exact"},{"name":"gamma-glutamylcysteine synthetase deficiency, hemolytic anaemia due to","type":"exact"},{"name":"gamma-glutamylcysteine synthetase deficiency, hemolytic anemia due to","type":"exact"},{"name":"glutamate-cysteine ligase deficiency","type":"exact"},{"name":"hemolytic anaemia due to gamma-glutamylcysteine synthetase deficiency","type":"exact"},{"name":"hemolytic anemia due to gamma-glutamylcysteine synthetase deficiency","type":"exact"},{"name":"inborn error of glutamate-cysteine ligase activity","type":"exact"},{"name":"inborn glutamate-cysteine ligase activity disorder","type":"exact"},{"name":"rare inborn error of glutamate-cysteine ligase activity","type":"exact"}],"termid":"MONDO:0009259","terms_by_termid":{"MONDO:0009259":null},"xrefs":{"Monarch":{"xref_id":"0009259"}}}


id: PBO:0117401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 278","termid":"PBO:0117401"}


id: GO:0003804
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the preferential cleavage of Arg-Thr and then Arg-Ile bonds in prothrombin to form thrombin, and on factor VII, which it converts to a two-chain form (factor VIIa).","definition_xrefs":["GOC:jl","PMID:7354023"],"gene_count":0,"genotype_count":0,"name":"obsolete coagulation factor Xa activity (obsolete GO:0003804)","synonyms":[{"name":"Stuart factor","type":"related"},{"name":"Stuart factor activity","type":"related"},{"name":"activated Stuart-Prower factor","type":"related"},{"name":"activated blood-coagulation factor X","type":"related"},{"name":"activated factor X","type":"related"},{"name":"autoprothrombin C","type":"related"},{"name":"blood coagulation factor X activity","type":"exact"},{"name":"coagulation factor Xa activity","type":"exact"},{"name":"factor Xa","type":"related"},{"name":"plasma thromboplastin","type":"related"},{"name":"prothrombase activity","type":"related"},{"name":"prothrombinase activity","type":"related"},{"name":"thrombokinase activity","type":"related"},{"name":"thromboplastin","type":"related"}],"termid":"GO:0003804"}


id: GO:0061501
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + GTP = 2 diphosphate + cyclic G-P(2'-5')A-P(3'-5') (cyclic 2',3' GAMP).","definition_xrefs":["RHEA:42064","PMID:23258413","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclic GMP-AMP synthase activity","termid":"GO:0140699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016779","GO:0003824"],"is_obsolete":false,"name":"2',3'-cyclic GMP-AMP synthase activity","secondary_identifiers":["EC:2.7.7.86","Reactome:R-HSA-3244614"],"synonyms":[{"name":"2',3' cyclic GMP-AMP synthase activity","type":"exact"},{"name":"2',3' cyclic-GMP-AMP synthase activity","type":"exact"},{"name":"cyclic 2',3' GAMP synthase activity","type":"exact"},{"name":"cyclic-GMP-AMP synthase activity","type":"broad"}],"termid":"GO:0061501"}


id: MONDO:0007071
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"chronic primary adrenal insufficiency","termid":"MONDO:0015129"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adrenocortical hypofunction, chronic primary congenital","secondary_identifiers":["SCTID:12427005","MESH:C562711","OMIM:103230","MEDGEN:78784","ICD9:255.41","UMLS:C0271740","GARD:15033"],"synonyms":[{"name":"Addison disease, congenital","type":"related"},{"name":"adrenocortical hypofunction, chronic primary congenital","type":"exact"}],"termid":"MONDO:0007071","xrefs":{"Monarch":{"xref_id":"0007071"}}}


id: GO:0071904
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process of protein N-linked glycosylation via asparagine in which N-acetylgalactosamine is added to the N4 of asparagine, forming an (S)-2-amino-4-(2-acetamido-2-deoxy-beta-D-galactopyranosyl)amino-4-oxobutanoic acid residue.","definition_xrefs":["GOC:pr","RESID:AA0420"],"gene_count":0,"genotype_count":0,"name":"obsolete protein N-linked N-acetylgalactosaminylation via asparagine (obsolete GO:0071904)","synonyms":[{"name":"protein amino acid N-linked N-acetylgalactosaminylation via asparagine","type":"exact"}],"termid":"GO:0071904"}


id: PBO:0074607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 12","termid":"PBO:0074607"}


id: PATO:0000974
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000974 relative porosity (obsolete PATO:0000974)","termid":"PATO:0000974"}


id: PATO:0000063
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000063 percentage (obsolete PATO:0000063)","termid":"PATO:0000063"}


id: MONDO:0002759
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A verrucous carcinoma that involves the urinary bladder.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bladder squamous cell carcinoma","termid":"MONDO:0002760"},{"relation_name":"is_a","term_name":"verrucous carcinoma","termid":"MONDO:0006006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"bladder verrucous carcinoma","secondary_identifiers":["DOID:3741","NCIT:C39832","UMLS:C1511208","MEDGEN:267376"],"synonyms":[{"name":"bladder verrucous carcinoma","type":"exact"},{"name":"bladder verrucous squamous cell carcinoma","type":"exact"},{"name":"urinary bladder verrucous carcinoma","type":"exact"}],"termid":"MONDO:0002759","xrefs":{"Monarch":{"xref_id":"0002759"}}}


id: PBO:0079780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP glucuronosyltransferase family 1 member A1","termid":"PBO:0079780"}


id: GO:0043709
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of a cell to a solid substrate, via cell adhesion molecules, during the formation of a biofilm composed of microorganisms of the same species.","definition_xrefs":["GOC:dph","GOC:jl","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell adhesion involved in biofilm formation","termid":"GO:0043708"},{"relation_name":"part_of","term_name":"single-species submerged biofilm formation","termid":"GO:0090609"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"cell adhesion involved in single-species biofilm formation","synonyms":[{"name":"cell adhesion during single-species biofilm formation","type":"related"}],"termid":"GO:0043709"}


id: PBO:0078876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRPS1 antisense RNA 1","termid":"PBO:0078876"}


id: MONDO:1011545
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Immunoglobulin A glomerulonephropathy that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerulonephritis, dog","termid":"MONDO:1011043"},{"relation_name":"is_a","term_name":"immunoglobulin A glomerulonephropathy, non-human animal","termid":"MONDO:1011449"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin A glomerulonephropathy, dog","secondary_identifiers":["OMIA:000553-9615"],"termid":"MONDO:1011545","xrefs":{"Monarch":{"xref_id":"1011545"}}}


id: FYPO:0006850
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the mitotic cell cycle is arrested at the mitotic G2/M phase transition, instead of the normal G1 phase, and after the cell undergoes one cell division instead of the normal two, when the cell is subject to nitrogen starvation.","definition_xrefs":["PMID:9472077","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell cycle arrest at mitotic G2/M phase transition during nitrogen starvation","termid":"FYPO:0001001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000298","FYPO:0005447","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"abnormal cell cycle arrest at mitotic G2/M phase transition following single cell division during nitrogen starvation","synonyms":[{"name":"abnormal cell cycle arrest at mitotic G2/M phase transition following single cell division during nitrogen depletion","type":"exact"},{"name":"abnormal cell cycle arrest at mitotic G2/M phase transition following single cell division during nitrogen deprivation","type":"exact"},{"name":"abnormal cell cycle arrest in mitotic G2 phase following single cell division during nitrogen starvation","type":"related"},{"name":"abnormal mitotic cell cycle arrest at mitotic G2/M phase transition following single cell division during nitrogen starvation","type":"exact"},{"name":"abolished mitotic G2/M phase transition following single cell division during nitrogen starvation","type":"related"},{"name":"cell cycle arrest at mitotic G2/M phase transition following single cell division during nitrogen starvation","type":"exact"},{"name":"mitotic G2 phase arrest following single cell division during nitrogen starvation","type":"exact"},{"name":"one cell division prior to cell cycle arrest at mitotic G2/M phase transition during nitrogen starvation","type":"exact"}],"termid":"FYPO:0006850"}


id: GO:0031650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate or extent of heat generation.","definition_xrefs":["GOC:mah","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"heat generation","termid":"GO:0031649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of heat generation","termid":"GO:0031650"}


id: MOD:00215
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-serine residue to the polymer heparan sulfate by a D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl tetrasaccharide.","definition_xrefs":["RESID:AA0210","PubMed:3472204"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosyl-L-serine","termid":"MOD:00002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"heparan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine","synonyms":[{"name":"heparan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine","type":"exact"},{"name":"heparin","type":"exact"},{"name":"heparitin sulfate","type":"exact"},{"name":"poly[alpha-1,4-(2-sulfate D-glucopyranuronosyl)-beta-1,4-(2-sulfamino-2-deoxy-6-sulfate D-glucosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine","type":"exact"}],"termid":"MOD:00215"}


id: MONDO:0700084
data:
  {"annotated_genes":["SJAG_03188"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87730],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014142"},{"annotations":[87723],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014140"},{"annotations":[87728],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014141"}]},"cv_name":"mondo","definition":"Any myopathy in which the cause of the disease is a variation in the GMPPB gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myopathy","termid":"MONDO:0005336"},{"relation_name":"is_a","term_name":"qualitative or quantitative defects of protein involved in O-glycosylation of alpha-dystroglycan","termid":"MONDO:0016155"},{"relation_name":"is_a","term_name":"hereditary skeletal muscle disorder","termid":"MONDO:0700223"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03188":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005336","MONDO:0002320","MONDO:0024322"],"is_obsolete":false,"name":"myopathy caused by variation in GMPPB","references_by_uniquename":{"PB_REF:0000006":null},"synonyms":[{"name":"GMPPB-related myopathy","type":"exact"},{"name":"myopathy caused by mutation in GMPPB","type":"exact"}],"termid":"MONDO:0700084","terms_by_termid":{"MONDO:0014140":null,"MONDO:0014141":null,"MONDO:0014142":null},"xrefs":{"Monarch":{"xref_id":"0700084"}}}


id: PBO:0086994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Reticulon protein; involved in nuclear pore assembly and maintenance of tubular ER morphology; promotes membrane curvature; regulates the ER asymmetry-induced inheritance block during ER stress; role in ER-derived peroxisomal biogenesis; increases tubular ER when overexpressed; mutants have reduced phosphatidylserine transfer between the ER and mitochondria; interacts with exocyst subunit Sec6p, Yip3p, and Sbh1p; member of the RTNLA subfamily","termid":"PBO:0086994"}


id: PBO:0028772
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_L-methionine_(R)-S-oxide","termid":"PBO:0028772"}


id: MONDO:0011256
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"emphysema, congenital, with deafness, penoscrotal web, and intellectual disability","secondary_identifiers":["OMIM:602564","MESH:C566519","UMLS:C1865180","MEDGEN:355926"],"synonyms":[{"name":"emphysema, congenital, with deafness, penoscrotal web, and intellectual disability","type":"exact"},{"name":"emphysema, congenital, with deafness, penoscrotal web, and mental retardation","type":"exact"}],"termid":"MONDO:0011256","xrefs":{"Monarch":{"xref_id":"0011256"}}}


id: PBO:0113106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dual-specificity kinase; required for SPB duplication and spindle checkpoint function in mitosis and meiosis; contributes to bi-orientation, promoting formation of force-generating kinetochore-microtubule attachments in meiosis I; autophosphorylation required for function; substrates include SPB proteins (Spc42p, Spc110p, Spc98p), mitotic exit network protein Mob1p, kinetochore protein Cnn1p, and checkpoint protein Mad1p; substrate of APCC(Cdh1); detected in peroxisomes; similar to human Mps1p","termid":"PBO:0113106"}


id: PBO:0038679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA synthetase medium chain family member 5","termid":"PBO:0038679"}


id: PBO:0074733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 91","termid":"PBO:0074733"}


id: GO:0008946
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the exonucleolytic cleavage of oligonucleotides to yield nucleoside 5'-phosphates.","definition_xrefs":["EC:3.1.13.3"],"gene_count":0,"genotype_count":0,"name":"obsolete oligonucleotidase activity (obsolete GO:0008946)","secondary_identifiers":["MetaCyc:3.1.13.3-RXN"],"termid":"GO:0008946"}


id: FYPO:0005232
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of one protein to a protein complex is normal (i.e. indistinguishable from wild type). The protein whose binding to the protein complex is assayed may be encoded by the mutated gene, or may be encoded by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein-protein interaction","termid":"FYPO:0000703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000702"}],"interesting_parent_ids":["FYPO:0000702","FYPO:0000257","FYPO:0000652"],"is_obsolete":false,"name":"normal protein complex binding","termid":"FYPO:0005232"}


id: GO:0035465
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway that is involved in the determination of the lateral plate mesoderm with respect to its left and right halves.","definition_xrefs":["GOC:dgh","PMID:15084459"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transforming growth factor beta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry (obsolete GO:0035465)","synonyms":[{"name":"regulation of TGF-beta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"},{"name":"regulation of TGF-beta receptor signalling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"},{"name":"regulation of TGFbeta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"},{"name":"regulation of TGFbeta receptor signalling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"},{"name":"regulation of transforming growth factor beta receptor signaling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"},{"name":"regulation of transforming growth factor beta receptor signalling pathway involved in determination of lateral mesoderm left/right asymmetry","type":"exact"}],"termid":"GO:0035465"}


id: PBO:0004354
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.1.1.153","termid":"PBO:0004354"}


id: GO:0102867
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2 H+ + MoO2-molybdopterin cofactor(2-) + L-cysteine = thio-molybdenum cofactor + L-alanine + H2O.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete molybdenum cofactor sulfurtransferase activity (obsolete GO:0102867)","termid":"GO:0102867"}


id: PBO:0057699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1287","termid":"PBO:0057699"}


id: PBO:0111966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dsl1/NZR complex secretory pathway protein Sec39","termid":"PBO:0111966"}


id: PATO:0002048
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An organismal quality inhering in a bearer by virtue of the bearer's having two or more cell populations that differ in genetic makeup. This situation can affect any type of cell, including blood cells, gametes (egg and sperm cells), and skin.","definition_xrefs":["Medline:http://www.nlm.nih.gov/medlineplus"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organismal quality","termid":"PATO:0001995"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mosaicism","synonyms":[{"name":"heterogeneity","type":"related"}],"termid":"PATO:0002048"}


id: GO:0010683
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving tricyclic triterpenoid compounds, terpenoids with six isoprene units and 3 rings.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triterpenoid metabolic process","termid":"GO:0006722"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"tricyclic triterpenoid metabolic process","synonyms":[{"name":"tricyclic triterpenoid metabolism","type":"exact"}],"termid":"GO:0010683"}


id: GO:0043369
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an immature T cell commits to CD4-positive T cell lineage or the CD8-positive lineage of alpha-beta T cells.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell lineage commitment","termid":"GO:0002360"},{"relation_name":"part_of","term_name":"positive T cell selection","termid":"GO:0043368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD4-positive or CD8-positive, alpha-beta T cell lineage commitment","synonyms":[{"name":"CD4-positive or CD8-positive, alpha-beta T lymphocyte lineage commitment","type":"exact"},{"name":"CD4-positive or CD8-positive, alpha-beta T-cell lineage commitment","type":"exact"},{"name":"CD4-positive or CD8-positive, alpha-beta T-lymphocyte lineage commitment","type":"exact"},{"name":"CD4-positive/CD8-positive, alpha-beta T cell lineage commitment","type":"exact"}],"termid":"GO:0043369"}


id: GO:0106323
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (4S)-limonene + NADPH+= + H+ + O2 = NADP+ + H2O + (4S)-limonene-1,2-epoxide.","definition_xrefs":["RHEA:26085"],"gene_count":0,"genotype_count":0,"name":"obsolete (S)-limonene 1,2-monooxygenase NADPH activity (obsolete GO:0106323)","termid":"GO:0106323"}


id: GO:0032974
data:
  {"annotated_genes":["SJAG_03899","SJAG_03400","SJAG_00051"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78811],"is_not":false,"summary":null,"term":"GO:0032974"},{"annotations":[92206],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034488"},{"annotations":[99164],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990818"},{"annotations":[99165],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0089708"},{"annotations":[99166],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0089707"}]},"cv_name":"biological_process","definition":"The directed movement of amino acids out of the vacuole, across the vacuolar membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transport","termid":"GO:0003333"},{"relation_name":"is_a","term_name":"vacuolar transmembrane transport","termid":"GO:0034486"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00051":null,"SJAG_03400":null,"SJAG_03899":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"amino acid transmembrane export from vacuole","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"amino acid efflux from vacuole","type":"exact"},{"name":"vacuolar amino acid export","type":"exact"}],"termid":"GO:0032974","terms_by_termid":{"GO:0032974":null,"GO:0034488":null,"GO:0089707":null,"GO:0089708":null,"GO:1990818":null}}


id: PBO:0113009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase involved in protein folding and NLS-directed nuclear transport; HSP70 family member; required for ubiquitin-dependent degradation of short-lived proteins; forms a chaperone complex with Ydj1p; localizes to the nucleus, cytoplasm and cell wall; unique functional specificity in the propagation of yeast [URE3] prions and vacuolar-mediated degradation of gluconeogenic enzymes; general targeting factor of Hsp104p to prion fibrils; 98% identity with paralog Ssa2p","termid":"PBO:0113009"}


id: GO:0015553
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of xanthosine, xanthine riboside, from one side of a membrane to the other.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleoside transmembrane transporter activity","termid":"GO:0015211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"xanthosine transmembrane transporter activity","termid":"GO:0015553"}


id: PBO:0088247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S11","termid":"PBO:0088247"}


id: PBO:0047710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flavin containing dimethylaniline monoxygenase 1","termid":"PBO:0047710"}


id: MONDO:0001521
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by recurrent episodes of serious assaultive acts or destruction of property due to a failure to resist aggressive impulses; the degree of aggression during these episodes is grossly out of proportion to any psychosocial provocation. The aggressive episodes are not etiologically linked to another mental disorder, a general medical condition, or substance use.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"impulse control disorder","termid":"MONDO:0001162"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intermittent explosive disorder","secondary_identifiers":["ICD10CM:F63.81","DOID:12401","NCIT:C94332","icd11.foundation:295017661","UMLS:C0021776","ICD9:301.3","SCTID:231527003","MEDGEN:7116","ICD9:312.34"],"synonyms":[{"name":"explosive personality disorder","type":"exact"}],"termid":"MONDO:0001521","xrefs":{"Monarch":{"xref_id":"0001521"}}}


id: PATO:0002319
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape with properties between those of a square and those of a circle.","definition_xrefs":["wikipedia:Squircle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"superelliptic","termid":"PATO:0002318"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"squircle","termid":"PATO:0002319"}


id: PBO:0043130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CIBAR1 pseudogene 2","termid":"PBO:0043130"}


id: GO:0102311
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (6E)-8-hydroxygeraniol + 2 NADP = (6E)-8-oxogeranial + 2 NADPH + 2 H+.","definition_xrefs":["EC:1.1.1.324","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"8-hydroxygeraniol dehydrogenase activity","secondary_identifiers":["MetaCyc:RXN-12961","RHEA:32659"],"termid":"GO:0102311"}


id: PBO:0074718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 78","termid":"PBO:0074718"}


id: PBO:0063657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase 2","termid":"PBO:0063657"}


id: GO:0006714
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving sesquiterpenoid compounds, terpenoids with three isoprene units.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpenoid metabolic process","termid":"GO:0006721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"sesquiterpenoid metabolic process","synonyms":[{"name":"sesquiterpenoid metabolism","type":"exact"}],"termid":"GO:0006714"}


id: PBO:0069220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 475, pseudogene","termid":"PBO:0069220"}


id: GO:0038115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of the C-C chemokine CCL19 to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:15059845","GOC:nhn","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine-mediated signaling pathway","termid":"GO:0070098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"chemokine (C-C motif) ligand 19 signaling pathway","synonyms":[{"name":"C-C chemokine receptor type 7 signaling pathway","type":"related"},{"name":"CCL19-mediated signaling pathway","type":"exact"},{"name":"chemokine (C-C motif) ligand 19 signalling pathway","type":"exact"}],"termid":"GO:0038115"}


id: GO:0072243
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephric nephron epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. The metanephric nephron epithelium is a tissue that covers the surface of a nephron in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron epithelium development","termid":"GO:0072009"},{"relation_name":"is_a","term_name":"metanephric epithelium development","termid":"GO:0072207"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric nephron epithelium development","termid":"GO:0072243"}


id: PBO:0045841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 31","termid":"PBO:0045841"}


id: GO:0140473
data:
  {"annotated_genes":["SJAG_01263","SJAG_05226"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[107791,119423],"is_not":false,"summary":null,"term":"GO:0140473"}]},"cv_name":"molecular_function","definition":"The binding activity of a molecule that brings together the telomeric region of a chromosome and the inner nuclear membrane by interacting with both the telomere and the nuclear membrane, in order to establish and maintain the telomeric location.","definition_xrefs":["PMID:31635174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-membrane adaptor activity","termid":"GO:0043495"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01263":null,"SJAG_05226":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0030674","GO:0060090","GO:0003674"],"is_obsolete":false,"name":"telomere-nuclear envelope anchor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"nuclear envelope-telomere anchor activity","type":"exact"},{"name":"telomere-nuclear envelope anchoring activity","type":"exact"}],"termid":"GO:0140473","terms_by_termid":{"GO:0140473":null}}


id: PBO:0053252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIM homeobox 5","termid":"PBO:0053252"}


id: MONDO:0009177
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"junctional epidermolysis bullosa","termid":"MONDO:0017612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"late-onset localized junctional epidermolysis bullosa-intellectual disability syndrome","secondary_identifiers":["Orphanet:231556","UMLS:C1856969","MEDGEN:341663","GARD:299","MESH:C535492","OMIM:226440"],"synonyms":[{"name":"epidermolysis bullosa simplex localisata associated with anodontia, hair and nail disorders","type":"related"},{"name":"epidermolysis bullosa, late-onset localised junctional, with intellectual disability","type":"related"},{"name":"epidermolysis bullosa, late-onset localised junctional, with mental retardation","type":"related"},{"name":"epidermolysis bullosa, late-onset localized junctional, with intellectual disability","type":"related"},{"name":"epidermolysis bullosa, late-onset localized junctional, with mental retardation","type":"related"}],"termid":"MONDO:0009177","xrefs":{"Monarch":{"xref_id":"0009177"}}}


id: PBO:0086348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTEN homolog with no demonstrated inositol lipid phosphatase activity; plays a role in normal sporulation; homolog of human tumor suppressor gene PTEN/MMAC1/TEP1 and fission yeast ptn1","termid":"PBO:0086348"}


id: MONDO:0008402
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cleft palate-large ears-small head syndrome is a rare, genetic syndrome characterized by cleft palate, large protruding ears, microcephaly and short stature (prenatal onset). Other skeletal abnormalities (delayed bone age, distally tapering fingers, hypoplastic distal phalanges, proximally placed thumbs, fifth finger clinodactyly), Pierre Robin sequence, cystic renal dysplasia, proximal renal tubular acidosis, hypospadia, cerebral anomalies on imaging (enlargement of lateral ventricles, mild cortical atrophy), seizures, hypotonia and developmental delay are also observed.","definition_xrefs":["Orphanet:2013"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cleft palate-large ears-small head syndrome","secondary_identifiers":["MEDGEN:357895","GARD:162","OMIM:181180","MESH:C536621","SCTID:763130006","UMLS:C1867023"],"synonyms":[{"name":"SAY syndrome","type":"related"},{"name":"Say Barber Hobbs syndrome","type":"related"},{"name":"Say-Barber-Hobbs syndrome","type":"exact"},{"name":"cleft palate large ears small head","type":"related"},{"name":"cleft palate, microcephaly, large ears, and short stature","type":"related"}],"termid":"MONDO:0008402","xrefs":{"Monarch":{"xref_id":"0008402"}}}


id: PBO:0001497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA snR98","termid":"PBO:0001497"}


id: PBO:0069063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 310, pseudogene","termid":"PBO:0069063"}


id: PBO:0082074
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5,10-methenyltetrahydrofolate synthetase; involved in folic acid biosynthesis","termid":"PBO:0082074"}


id: PBO:0059814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 40","termid":"PBO:0059814"}


id: MONDO:0021521
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that involves the mediastinum.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thoracic benign neoplasm","termid":"MONDO:0000634"},{"relation_name":"is_a","term_name":"neoplasm of mediastinum","termid":"MONDO:0021386"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign neoplasm of mediastinum","secondary_identifiers":["SCTID:92214000","ICD9:212.5","icd11.foundation:1337535393","MEDGEN:102298","NCIT:C3604","ICD10CM:D15.2","UMLS:C0153956"],"synonyms":[{"name":"benign mediastinal neoplasm","type":"exact"},{"name":"benign mediastinal tumor","type":"exact"},{"name":"benign mediastinal tumour","type":"exact"},{"name":"benign neoplasm of the mediastinum","type":"exact"},{"name":"benign tumor of mediastinum","type":"exact"},{"name":"benign tumor of the mediastinum","type":"exact"},{"name":"benign tumour of mediastinum","type":"exact"},{"name":"benign tumour of the mediastinum","type":"exact"},{"name":"mediastinum benign neoplasm","type":"exact"}],"termid":"MONDO:0021521","xrefs":{"Monarch":{"xref_id":"0021521"}}}


id: PR:P78774
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An actin-related protein 2/3 complex subunit 1A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03179","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin-related protein 2/3 complex subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC14C8.06","secondary_identifiers":["UniProtKB:P78774"],"synonyms":[{"name":"Spom972h-ARPC1A","type":"exact"},{"name":"arp2/3 complex 41 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"p41-ARC (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P78774"}


id: GO:0002841
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of a T cell mediated immune response to tumor cell.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T cell mediated immunity","termid":"GO:0002710"},{"relation_name":"is_a","term_name":"negative regulation of immune response to tumor cell","termid":"GO:0002838"},{"relation_name":"is_a","term_name":"regulation of T cell mediated immune response to tumor cell","termid":"GO:0002840"},{"relation_name":"negatively_regulates","term_name":"T cell mediated immune response to tumor cell","termid":"GO:0002424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of T cell mediated immune response to tumor cell","synonyms":[{"name":"down regulation of T cell mediated immune response to tumor cell","type":"exact"},{"name":"down-regulation of T cell mediated immune response to tumor cell","type":"exact"},{"name":"downregulation of T cell mediated immune response to tumor cell","type":"exact"},{"name":"inhibition of T cell mediated immune response to tumor cell","type":"narrow"},{"name":"negative regulation of T cell mediated immune response to tumour cell","type":"exact"},{"name":"negative regulation of T lymphocyte mediated immune response to tumor cell","type":"exact"},{"name":"negative regulation of T-cell mediated immune response to tumor cell","type":"exact"},{"name":"negative regulation of T-lymphocyte mediated immune response to tumor cell","type":"exact"}],"termid":"GO:0002841"}


id: PBO:0091198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Met","termid":"PBO:0091198"}


id: PBO:0031332
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_calcium","termid":"PBO:0031332"}


id: GO:0019878
data:
  {"annotated_genes":["SJAG_02388","SJAG_01061","SJAG_00869","SJAG_00502","SJAG_03312","SJAG_04688","SJAG_01630","SJAG_01955","SJAG_01574"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65338,65995,71906,76772,77977,78412,79201,98178,115308],"is_not":false,"summary":null,"term":"GO:0019878"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of lysine by the aminoadipic pathway.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysine biosynthetic process","termid":"GO:0009085"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00502":null,"SJAG_00869":null,"SJAG_01061":null,"SJAG_01574":null,"SJAG_01630":null,"SJAG_01955":null,"SJAG_02388":null,"SJAG_03312":null,"SJAG_04688":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"lysine biosynthetic process via aminoadipic acid","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"lysine anabolism via aminoadipic acid","type":"exact"},{"name":"lysine biosynthesis, aminoadipic acid pathway","type":"exact"},{"name":"lysine biosynthesis, aminoadipic pathway","type":"exact"},{"name":"lysine biosynthetic process, aminoadipic acid pathway","type":"exact"},{"name":"lysine biosynthetic process, aminoadipic pathway","type":"exact"},{"name":"lysine formation via aminoadipic acid","type":"exact"},{"name":"lysine synthesis via aminoadipic acid","type":"exact"}],"termid":"GO:0019878","terms_by_termid":{"GO:0019878":null}}


id: PBO:0070105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 19 pseudogene","termid":"PBO:0070105"}


id: GO:0004366
data:
  {"annotated_genes":["SJAG_03305","SJAG_02654"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71824,72288],"is_not":false,"summary":null,"term":"GO:0004366"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: an acyl-CoA + sn-glycerol 3-phosphate = a 1-acyl-sn-glycero-3-phosphate + CoA.","definition_xrefs":["RHEA:15325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02654":null,"SJAG_03305":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016746","GO:0016740"],"is_obsolete":false,"name":"glycerol-3-phosphate O-acyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-549112","EC:2.3.1.15","Reactome:R-HSA-1482695","Reactome:R-HSA-75886","MetaCyc:RXN-1381"],"synonyms":[{"name":"3-glycerophosphate acyltransferase activity","type":"related"},{"name":"ACP:sn-glycerol-3-phosphate acyltransferase activity","type":"related"},{"name":"acyl-CoA:sn-glycerol-3-phosphate 1-O-acyltransferase activity","type":"related"},{"name":"alpha-glycerophosphate acyltransferase activity","type":"related"},{"name":"glycerol 3-phosphate acyltransferase activity","type":"related"},{"name":"glycerol phosphate acyltransferase activity","type":"related"},{"name":"glycerol phosphate transacylase activity","type":"related"},{"name":"glycerophosphate acyltransferase activity","type":"related"},{"name":"glycerophosphate transacylase activity","type":"related"},{"name":"sn-glycerol 3-phosphate acyltransferase activity","type":"related"},{"name":"sn-glycerol-3-phosphate acyltransferase activity","type":"related"}],"termid":"GO:0004366","terms_by_termid":{"GO:0004366":null}}


id: GO:0008087
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that forms a transmembrane channel through which calcium ions may cross a cell membrane in response to changes in membrane potential generated in response to a light stimulus.","definition_xrefs":["GOC:mah","PMID:9223679"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated calcium channel complex","termid":"GO:0005891"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"light-activated voltage-gated calcium channel complex","synonyms":[{"name":"light-activated voltage gated calcium channel complex","type":"exact"},{"name":"light-activated voltage-dependent calcium channel complex","type":"exact"},{"name":"light-activated voltage-sensitive calcium channel complex","type":"exact"}],"termid":"GO:0008087"}


id: PBO:0054998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2413","termid":"PBO:0054998"}


id: MONDO:0700195
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A fibrosarcoma, originally observed in a Plymouth Rock hen, now thought to be an expression of infection by certain viruses of the avian leukosis-sarcoma complex in the family","definition_xrefs":["NCIT:C17466"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chicken fibrosarcoma","termid":"MONDO:0700191"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rous sarcoma","termid":"MONDO:0700195","xrefs":{"Monarch":{"xref_id":"0700195"}}}


id: GO:0030813
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catabolic process","termid":"GO:0009896"},{"relation_name":"is_a","term_name":"regulation of nucleotide catabolic process","termid":"GO:0030811"},{"relation_name":"is_a","term_name":"positive regulation of nucleotide metabolic process","termid":"GO:0045981"},{"relation_name":"positively_regulates","term_name":"nucleotide catabolic process","termid":"GO:0009166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"positively_regulates","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"positive regulation of nucleotide catabolic process","synonyms":[{"name":"activation of nucleotide catabolic process","type":"narrow"},{"name":"positive regulation of nucleotide breakdown","type":"exact"},{"name":"positive regulation of nucleotide catabolism","type":"exact"},{"name":"positive regulation of nucleotide degradation","type":"exact"},{"name":"stimulation of nucleotide catabolic process","type":"narrow"},{"name":"up regulation of nucleotide catabolic process","type":"exact"},{"name":"up-regulation of nucleotide catabolic process","type":"exact"},{"name":"upregulation of nucleotide catabolic process","type":"exact"}],"termid":"GO:0030813"}


id: GO:1990048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of substances in neuronal dense core vesicles along axonal microtubules towards the presynapse.","definition_xrefs":["GOC:kmv","PMID:23358451"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anterograde axonal transport","termid":"GO:0008089"},{"relation_name":"is_a","term_name":"vesicle transport along microtubule","termid":"GO:0047496"},{"relation_name":"is_a","term_name":"dense core granule cytoskeletal transport","termid":"GO:0099519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"anterograde neuronal dense core vesicle transport","synonyms":[{"name":"anterograde dense core granule trafficking","type":"exact"},{"name":"anterograde dense core granule transport","type":"exact"}],"termid":"GO:1990048"}


id: PBO:0091650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane inorganic phosphate transmembrane transporter Pho841","termid":"PBO:0091650"}


id: PBO:0042729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromere protein H","termid":"PBO:0042729"}


id: PBO:0029968
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cellular_response_to_gamma_radiation","termid":"PBO:0029968"}


id: FYPO:0007687
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to nuclear exosome foci is normal (i.e. indistinguishable from wild type) during meiosis. Nuclear exosome foci, also called Mmi1 foci, are small structures that form within the nucleus, and contain proteins involved in degrading meiosis-specific RNAs during the mitotic cell cycle.","definition_xrefs":["PMID:33574613","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during meiosis","termid":"FYPO:0003790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to nuclear exosome focus during meiosis","synonyms":[{"name":"normal protein localisation to nuclear exosome focus during meiosis","type":"exact"},{"name":"normal protein localization to Mmi1 focus during meiosis","type":"exact"},{"name":"normal protein localization to Mmi1 nuclear focus during meiosis","type":"exact"},{"name":"normal protein localization to nuclear exosome foci during meiosis","type":"exact"},{"name":"normal protein localization to nuclear exosome focus during meiotic nuclear division","type":"exact"}],"termid":"FYPO:0007687"}


id: PBO:0080718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat and SOCS box containing 2","termid":"PBO:0080718"}


id: PBO:0015709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteinase B inhibitor Pbi2","termid":"PBO:0015709"}


id: GO:0008520
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: L-ascorbate(out) + Na+(out) = L-ascorbate(in) + Na+(in).","definition_xrefs":["PMID:18094143","GOC:yaf","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic acid:sodium symporter activity","termid":"GO:0005343"},{"relation_name":"is_a","term_name":"carbohydrate:monoatomic cation symporter activity","termid":"GO:0005402"},{"relation_name":"is_a","term_name":"monosaccharide transmembrane transporter activity","termid":"GO:0015145"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transporter activity","termid":"GO:0046943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"L-ascorbate:sodium symporter activity","secondary_identifiers":["RHEA:69883","GO:0070890","TC:2.A.40.6.1"],"synonyms":[{"name":"sodium-dependent L-ascorbate transmembrane transporter activity","type":"related"},{"name":"sodium-dependent L-ascorbic acid transporter","type":"related"}],"termid":"GO:0008520"}


id: MONDO:1010750
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Epidermolysis bullosa that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermolysis bullosa, non-human animal","termid":"MONDO:1010129"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epidermolysis bullosa, dog","secondary_identifiers":["OMIA:000340-9615"],"termid":"MONDO:1010750","xrefs":{"Monarch":{"xref_id":"1010750"}}}


id: GO:1903653
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont alters or subverts cell motility in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:TermGenie","GO_REF:0000063","PMID:25049409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host cellular process","termid":"GO:0044068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host cell motility","synonyms":[{"name":"modulation by symbiont of host cell locomotion","type":"exact"},{"name":"modulation by symbiont of host cell motility","type":"exact"},{"name":"modulation by symbiont of host cell movement","type":"related"},{"name":"regulation by symbiont of host cell motility","type":"exact"}],"termid":"GO:1903653"}


id: PBO:0070509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L6 pseudogene 8","termid":"PBO:0070509"}


id: PBO:0075623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SREBF pathway regulator in golgi 1","termid":"PBO:0075623"}


id: FYPO:0004171
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell that is subject to glucose starvation is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level","termid":"FYPO:0000840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal RNA level during glucose starvation","synonyms":[{"name":"normal RNA accumulation during glucose starvation","type":"related"},{"name":"normal RNA level during cellular response to glucose starvation","type":"exact"},{"name":"normal RNA level during glucose depletion","type":"exact"},{"name":"normal RNA level during glucose deprivation","type":"exact"},{"name":"normal RNA level during glucose limitation","type":"related"},{"name":"normal cellular RNA level during glucose starvation","type":"exact"},{"name":"normal mRNA level during glucose starvation","type":"narrow"},{"name":"normal transcript level during glucose starvation","type":"exact"}],"termid":"FYPO:0004171"}


id: MONDO:0800383
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Joubert syndrome","termid":"MONDO:0018772"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Joubert syndrome 34","secondary_identifiers":["UMLS:C4539386","MEDGEN:1612206"],"synonyms":[{"name":"JBTS34","type":"exact"}],"termid":"MONDO:0800383","xrefs":{"Monarch":{"xref_id":"0800383"}}}


id: GO:1905693
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phosphatidic acid biosynthetic process.","definition_xrefs":["GO_REF:0000058","GOC:bc","GOC:TermGenie","PMID:23767959","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phospholipid biosynthetic process","termid":"GO:0071071"},{"relation_name":"regulates","term_name":"phosphatidic acid biosynthetic process","termid":"GO:0006654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"regulation of phosphatidic acid biosynthetic process","synonyms":[{"name":"regulation of phosphatidic acid anabolism","type":"exact"},{"name":"regulation of phosphatidic acid biosynthesis","type":"exact"},{"name":"regulation of phosphatidic acid formation","type":"exact"},{"name":"regulation of phosphatidic acid synthesis","type":"exact"}],"termid":"GO:1905693"}


id: GO:0005029
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete CD27 receptor activity (obsolete GO:0005029)","synonyms":[{"name":"CD27 receptor activity","type":"exact"}],"termid":"GO:0005029"}


id: GO:0048929
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of an efferent axon in the posterior lateral line nerve over time from its formation to the mature structure. This process includes axonogenesis and pathfinding of the efferent axons in the posterior lateral line nerve.","definition_xrefs":["PMID:15018940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"efferent axon development in a lateral line nerve","termid":"GO:0048894"},{"relation_name":"part_of","term_name":"posterior lateral line nerve development","termid":"GO:0048918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"efferent axon development in posterior lateral line nerve","termid":"GO:0048929"}


id: FYPO:0002174
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of an RNA catabolic process that specifically degrades DSR-containing RNA molecules is decreased. A DSR (determinant of selective removal) is a region that is often found near the 3' end of meiosis-specific transcripts, usually contains one or more copies of the motif U(U/C/G)AAAC, and targets RNAs for degradation in vegetatively growing cells.","definition_xrefs":["PMID:22046364","PMID:22645662","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA catabolic process during vegetative growth","termid":"FYPO:0002137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000294","FYPO:0005447"],"is_obsolete":false,"name":"decreased degradation of DSR-containing RNA","synonyms":[{"name":"decreased RNA catabolic process, DSR-containing RNA","type":"exact"},{"name":"decreased catabolism of DSR-containing RNA","type":"exact"},{"name":"decreased degradation of DSR-containing RNA during mitotic cell cycle","type":"related"},{"name":"decreased degradation of DSR-containing RNA during vegetative growth","type":"exact"},{"name":"reduced degradation of DSR-containing RNA","type":"exact"}],"termid":"FYPO:0002174"}


id: PBO:0088164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Water channel that mediates water transport across cell membranes; only expressed in proliferating cells; controlled by osmotic signals; may be involved in freeze tolerance; disrupted by a stop codon in many S. cerevisiae strains","termid":"PBO:0088164"}


id: PBO:0079347
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 31, pseudogene","termid":"PBO:0079347"}


id: MONDO:1012945
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cerebellar abiotrophy that occurs in dogs due to a mutation in the VMP1 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebellar abiotrophy, dog","termid":"MONDO:1012038"},{"relation_name":"is_a","term_name":"cerebellar ataxia, dog","termid":"MONDO:1012957"},{"relation_name":"is_a","term_name":"hereditary cerebellar ataxia, non-human animal","termid":"MONDO:1012960"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebellar abiotrophy, VMP1-related, dog","secondary_identifiers":["OMIA:002602-9615"],"termid":"MONDO:1012945","xrefs":{"Monarch":{"xref_id":"1012945"}}}


id: PR:Q92368
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cell differentiation protein RCD1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR12262:SF0","OMA:SCHPO02251"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell differentiation protein rcd1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29B12.06c","secondary_identifiers":["UniProtKB:Q92368"],"synonyms":[{"name":"Spom972h-RQCD1","type":"exact"}],"termid":"PR:Q92368"}


id: PBO:0079232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TTC7B antisense RNA 1","termid":"PBO:0079232"}


id: GO:0072468
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A signal transduction process that contributes to a cell shape checkpoint.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete signal transduction involved in cell shape checkpoint (obsolete GO:0072468)","termid":"GO:0072468"}


id: PBO:0087859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional activator involved in maintenance of ion homeostasis; also involved in protection against DNA damage caused by bleomycin and other oxidants; contains a C-terminal leucine-rich repeat","termid":"PBO:0087859"}


id: RO:0002557
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"host_of","termid":"RO:0002453"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_pathogen","termid":"RO:0002557"}


id: MONDO:0006629
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Noninflammatory degenerative disease of the hip joint which usually appears in late middle or old age. It is characterized by growth or maturational disturbances in the femoral neck and head, as well as acetabular dysplasia. A dominant symptom is pain on weight-bearing or motion.","definition_xrefs":["MESH:D015207"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteoarthritis","termid":"MONDO:0005178"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteoarthritis, hip","secondary_identifiers":["EFO:1000786","NCIT:C34876","UMLS:C0029410","MEDGEN:14530"],"synonyms":[{"name":"hip osteoarthritis","type":"exact"}],"termid":"MONDO:0006629","xrefs":{"Monarch":{"xref_id":"0006629"}}}


id: GO:0016590
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An ISWI complex that contains an ATPase subunit of the ISWI family (SNF2H in mammals, Isw2 in S. cerevisiae), an ACF1 homolog, and generally no other subunits, though Xenopus is an exception with a third non-conserved subunit. ACF plays roles in regulation of RNA polymerase II transcription and in DNA replication and repair.","definition_xrefs":["PMID:12192034","GOC:krc","GOC:bf","PMID:15284901","PMID:16568949","PMID:21810179"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ISWI-type complex","termid":"GO:0031010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634","GO:0005694"],"is_obsolete":false,"name":"ACF complex","synonyms":[{"name":"ATP-utilizing chromatin assembly and remodeling factor complex","type":"exact"}],"termid":"GO:0016590"}


id: MONDO:0012247
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spinocerebellar ataxia type 27 (SCA27) is a very rare subtype of type I autosomal dominant cerebellar ataxia (ADCA type I). It is characterized by early-onset tremor, dyskinesia, and slowly progressive cerebellar ataxia.","definition_xrefs":["Orphanet:98764"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant cerebellar ataxia type I","termid":"MONDO:0019792"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0005559","MONDO:0000426"],"is_obsolete":false,"name":"spinocerebellar ataxia type 27","secondary_identifiers":["GARD:9963","OMIM:609307","UMLS:C1836383","DOID:0050976","icd11.foundation:1408059647","MEDGEN:373075","SCTID:719252002","MESH:C537204"],"synonyms":[{"name":"SCA27","type":"exact"},{"name":"cerebellar ataxia autosomal dominant FGF14-related","type":"related"},{"name":"cerebellar ataxia, autosomal dominant, Fgf14-related","type":"related"},{"name":"spinocerebellar ataxia 27","type":"related"},{"name":"spinocerebellar ataxia type 27","type":"exact"}],"termid":"MONDO:0012247","xrefs":{"Monarch":{"xref_id":"0012247"}}}


id: PBO:0030759
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_mevastatin","termid":"PBO:0030759"}


id: MONDO:0018087
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A viral infectious disease caused by RNA viruses in the Arenaviridae, Bunyaviridae, Filoviridae, or Flaviviridae family, and characterized by a severe multisystem syndrome, with damage to the vascular system and hemorrhaging.","direct_ancestors":[{"relation_name":"is_a","term_name":"viral infectious disease","termid":"MONDO:0005108"},{"relation_name":"is_a","term_name":"hemorrhagic fever","termid":"MONDO:0600002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"viral hemorrhagic fever","secondary_identifiers":["Orphanet:341","SCTID:240523007","UMLS:C0019104","MESH:D006482","NCIT:C36170","GARD:5494","MEDGEN:9213"],"synonyms":[{"name":"VHF","type":"exact"},{"name":"VHFs","type":"exact"},{"name":"haemorrhagic fever","type":"broad"},{"name":"haemorrhagic fevers, viral","type":"exact"},{"name":"hemorrhagic fever","type":"broad"},{"name":"hemorrhagic fevers","type":"broad"},{"name":"viral haemorrhagic fever","type":"exact"}],"termid":"MONDO:0018087","xrefs":{"Monarch":{"xref_id":"0018087"}}}


id: PBO:0057295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 512-2","termid":"PBO:0057295"}


id: PBO:0039431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin 2","termid":"PBO:0039431"}


id: GO:0016453
data:
  {"annotated_genes":["SJAG_00413"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74896],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003985"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of an acetyl group to a carbon atom on the acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetyltransferase activity","termid":"GO:0016407"},{"relation_name":"is_a","term_name":"C-acyltransferase activity","termid":"GO:0016408"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00413":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016746"],"is_obsolete":false,"name":"C-acetyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0016453","terms_by_termid":{"GO:0003985":null}}


id: GO:0030273
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with the cyclic peptide hormone melanin-concentrating hormone to initiate a change in cell activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"},{"relation_name":"is_a","term_name":"protein-hormone receptor activity","termid":"GO:0016500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"melanin-concentrating hormone receptor activity","synonyms":[{"name":"MCH receptor","type":"exact"}],"termid":"GO:0030273"}


id: GO:0048255
data:
  {"annotated_genes":["SJAG_04825","SJAG_00797","SJAG_02573","SJAG_03696","SJAG_03283","SJAG_04946"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72370,91302],"is_not":false,"summary":null,"term":"GO:0048255"},{"annotations":[80461,92004,101915,80501],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070935"}]},"cv_name":"biological_process","definition":"Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mRNA stability","termid":"GO:0043488"},{"relation_name":"is_a","term_name":"RNA stabilization","termid":"GO:0043489"},{"relation_name":"is_a","term_name":"negative regulation of mRNA catabolic process","termid":"GO:1902373"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00797":null,"SJAG_02573":null,"SJAG_03283":null,"SJAG_03696":null,"SJAG_04825":null,"SJAG_04946":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0016071"],"is_obsolete":false,"name":"mRNA stabilization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0048255","terms_by_termid":{"GO:0048255":null,"GO:0070935":null}}


id: PBO:0031485
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-long_meiotic_spindle","termid":"PBO:0031485"}


id: PBO:0048926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin B1","termid":"PBO:0048926"}


id: SO:0002105
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A processed pseudogene where there is evidence, (mass spec data) suggesting that it is also translated.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"processed_pseudogene","termid":"SO:0000043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translated_processed_pseudogene","synonyms":[{"name":"translated processed pseudogene","type":"exact"}],"termid":"SO:0002105"}


id: MONDO:0003924
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that can arise from any of the adrenal cortical layers. It can be associated with the overproduction of glucocorticoids (Cushing's syndrome), androgenic or estrogenic steroids (adrenogenital syndrome), or mineralocorticoids (Conn's syndrome). (Sternberg Diagnostic Surgical Pathology, 3rd ed.)","definition_xrefs":["NCIT:C9003"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenoma","termid":"MONDO:0004972"},{"relation_name":"is_a","term_name":"benign neoplasm of adrenal gland","termid":"MONDO:0021511"},{"relation_name":"is_a","term_name":"adrenal cortex neoplasm","termid":"MONDO:0036591"},{"relation_name":"is_a","term_name":"benign epithelial neoplasm","termid":"MONDO:0036976"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adrenal cortex adenoma","secondary_identifiers":["NANDO:2200352","SCTID:302826002","MEDGEN:61654","Orphanet:99888","ONCOTREE:ACA","DOID:0050891","MESH:D018246","UMLS:C0206667","MONDO:0005248","EFO:0003104","HP:0008196","DOID:656","HP:0008256","ICDO:8370/0"],"synonyms":[{"name":"adenoma of adrenal cortex","type":"exact"},{"name":"adenoma of adrenal gland","type":"exact"},{"name":"adenoma of the adrenal cortex","type":"exact"},{"name":"adenoma of the adrenal gland","type":"exact"},{"name":"adenoma, adrenocortical, benign","type":"exact"},{"name":"adrenal adenoma","type":"exact"},{"name":"adrenal cortex adenoma","type":"exact"},{"name":"adrenal cortical adenoma","type":"exact"},{"name":"adrenal gland adenoma","type":"exact"},{"name":"adrenal incidentaloma","type":"related"},{"name":"adrenocortical adenoma","type":"exact"},{"name":"benign adenoma of adrenal gland","type":"exact"},{"name":"benign adenoma of the adrenal gland","type":"exact"},{"name":"benign adrenal adenoma","type":"exact"},{"name":"benign adrenal gland adenoma","type":"exact"},{"name":"cortical cell adenoma","type":"exact"}],"termid":"MONDO:0003924","xrefs":{"Monarch":{"xref_id":"0003924"}}}


id: SO:0001425
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A read produced by ligation based sequencing technologies.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"read","termid":"SO:0000150"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ligation_based_read","synonyms":[{"name":"ligation based read","type":"related"}],"termid":"SO:0001425"}


id: PBO:0077283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 26","termid":"PBO:0077283"}


id: PBO:0063103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(ADP-ribose) glycohydrolase pseudogene 1","termid":"PBO:0063103"}


id: PBO:0071311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 34","termid":"PBO:0071311"}


id: MONDO:0035161
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary dementia","termid":"MONDO:0015547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0002039"],"is_obsolete":false,"name":"progressive dementia with neuroserpin inclusion bodies","secondary_identifiers":["ICD10CM:G40.3","UMLS:C5680143","MEDGEN:1842194","Orphanet:530303","GARD:22208"],"synonyms":[{"name":"late-onset familial encephalopathy with neuroserpin inclusion bodies","type":"exact"}],"termid":"MONDO:0035161","xrefs":{"Monarch":{"xref_id":"0035161"}}}


id: MONDO:0001525
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"thyroid gland disorder","termid":"MONDO:0003240"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thyrocalcitonin secretion disease","secondary_identifiers":["UMLS:C0701822","ICD9:246.0","DOID:12424","MEDGEN:675237","SCTID:190303007"],"synonyms":[{"name":"disorder of thyrocalcitonin secretion","type":"exact"}],"termid":"MONDO:0001525","xrefs":{"Monarch":{"xref_id":"0001525"}}}


id: MONDO:0015977
data:
  {"annotated_genes":["SJAG_02330","SJAG_02208","SJAG_00222"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87894],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030519"},{"annotations":[87887,87886],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0958013"}]},"cv_name":"mondo","definition":"A decreased level of serum immunoglobulins. It may be inherited or acquired. It is caused by decreased or inefficient production of immunoglobulins from B cells or by a decrease in the numbers of B cells themselves. Low levels of immunoglobulins will affect the immune system's ability to combat bacterial infection. Supplementation of immunoglobulins is needed to prevent worsening outcomes.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B cell deficiency","termid":"MONDO:0002211"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00222":null,"SJAG_02208":null,"SJAG_02330":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"agammaglobulinemia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:2583","GARD:20320","ICD9:279.00","MedDRA:10001471","Orphanet:183669","MESH:D000361","OMIMPS:601495","UMLS:C0001768","MEDGEN:168"],"synonyms":[{"name":"Gammaglobulin Deficiency","type":"related"},{"name":"IGHM","type":"exact"},{"name":"Immunoglobulin Deficiency","type":"related"},{"name":"agammaglobulinemia","type":"exact"},{"name":"antibody Deficiency","type":"related"},{"name":"hypogammaglobulinemia","type":"exact"},{"name":"mu heavy chain deficiency","type":"exact"}],"termid":"MONDO:0015977","terms_by_termid":{"MONDO:0030519":null,"MONDO:0958013":null},"xrefs":{"Monarch":{"xref_id":"0015977"}}}


id: MONDO:1012193
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"thalamic-cerebellar neuropathy, non-human animal","termid":"MONDO:1011854"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thalamic-cerebellar neuropathy, sheep","secondary_identifiers":["OMIA:000723-9940"],"termid":"MONDO:1012193","xrefs":{"Monarch":{"xref_id":"1012193"}}}


id: GO:0075054
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of symbiont penetration peg formation for entry into host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"is_a","term_name":"modulation by symbiont of entry into host","termid":"GO:0052372"},{"relation_name":"regulates","term_name":"penetration peg formation","termid":"GO:0075053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation of penetration peg formation","secondary_identifiers":["GO:0075058"],"synonyms":[{"name":"modulation of symbiont penetration peg formation for entry into host","type":"narrow"},{"name":"modulation of symbiont penetration peg initiation","type":"narrow"}],"termid":"GO:0075054"}


id: GO:0000247
data:
  {"annotated_genes":["SJAG_03598"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94415],"is_not":false,"summary":null,"term":"GO:0000247"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: fecosterol = episterol.","definition_xrefs":["RHEA:33435","PMID:8988026"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, transposing C=C bonds","termid":"GO:0016863"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03598":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"C-8 sterol isomerase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN3O-203"],"synonyms":[{"name":"delta-8-delta-7 sterol isomerase activity","type":"exact"}],"termid":"GO:0000247","terms_by_termid":{"GO:0000247":null}}


id: PBO:0050448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein U like 2","termid":"PBO:0050448"}


id: MONDO:0018737
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"antiphospholipid syndrome","termid":"MONDO:8000010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"catastrophic antiphospholipid syndrome","secondary_identifiers":["NANDO:1200270","GARD:9820","UMLS:C3662487","Orphanet:464343","MEDGEN:783641","SCTID:609329007","ICD9:289.81"],"synonyms":[{"name":"CAPS","type":"exact"},{"name":"caps","type":"exact"},{"name":"catastrophic APS","type":"exact"}],"termid":"MONDO:0018737","xrefs":{"Monarch":{"xref_id":"0018737"}}}


id: PBO:0052366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 14","termid":"PBO:0052366"}


id: PBO:0072406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S27 pseudogene 11","termid":"PBO:0072406"}


id: MONDO:0012064
data:
  {"annotated_genes":["SJAG_04222"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87397],"is_not":false,"summary":null,"term":"MONDO:0012064"}]},"cv_name":"mondo","definition":"Choanal atresia - deafness - cardiac defects - dysmorphism syndrome, also known as Burn-McKeown syndrome, is an extremely rare multiple congenital anomaly syndrome characterized by bilateral choanal atresia associated with a characteristic cranio-facial dysmorphism (hypertelorism with narrow palpebral fissures, coloboma of inferior eyelid with presence of eyelashes medial to the defect, prominent nasal bridge, thin lips, prominent ears), that can be accompanied by hearing loss, unilateral cleft lip, preauricular tags, cardiac septal defects and anomalies of the kidneys. The features of this syndrome overlaps considerably with those of the CHARGE syndrome.","definition_xrefs":["Orphanet:1200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04222":null},"genotype_count":0,"is_obsolete":false,"name":"choanal atresia-hearing loss-cardiac defects-craniofacial dysmorphism syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0080695","UMLS:C1837822","MESH:C563682","GARD:10041","MEDGEN:325265","OMIM:608572"],"synonyms":[{"name":"BMKS","type":"related"},{"name":"Burn-McKeown syndrome","type":"exact"},{"name":"bilateral choanal atresia, cardiac defects, deafness, and dysmorphic appearance","type":"related"},{"name":"choanal atresia deafness cardiac defects dysmorphism","type":"related"},{"name":"oculootofacial dysplasia","type":"exact"}],"termid":"MONDO:0012064","terms_by_termid":{"MONDO:0012064":null},"xrefs":{"Monarch":{"xref_id":"0012064"}}}


id: PBO:0016575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF1941 family protein, human neurochondrin ortholog","termid":"PBO:0016575"}


id: PR:O74919
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rnc1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74919"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein rnc1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC757.09c","synonyms":[{"name":"RNA-binding protein that suppresses calcineurin deletion 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rnc1","type":"exact"}],"termid":"PR:O74919"}


id: GO:0030211
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of heparin proteoglycans, which consist of a core protein linked to a heparin glycosaminoglycan. The heparin chain is composed of the repeating disaccharide unit beta-(1,4)-N-acetyl-D-glucosamine-alpha-(1,4)-hexuronic acid, the former being either sulfated or deacetylated on its amino group as well as sulfated on one of its hydroxyl groups and the latter being a mixture of sulfated and nonsulfated D-glucuronic and L-iduronic acids. Heparin is similar to heparan sulfate but it contains more N-sulfate and O-sulfate groups.","definition_xrefs":["PMID:35536982"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteoglycan catabolic process","termid":"GO:0030167"},{"relation_name":"is_a","term_name":"heparin proteoglycan metabolic process","termid":"GO:0030202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"heparin proteoglycan catabolic process","synonyms":[{"name":"heparan sulfate catabolic process","type":"related"},{"name":"heparin breakdown","type":"exact"},{"name":"heparin catabolism","type":"exact"},{"name":"heparin degradation","type":"exact"}],"termid":"GO:0030211"}


id: GO:2000775
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any histone H3-S10 phosphorylation that is involved in chromosome condensation.","definition_xrefs":["GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-S10 phosphorylation involved in chromosome condensation (obsolete GO:2000775)","synonyms":[{"name":"histone H3 phosphorylation at S10 of chromosome condensation","type":"exact"},{"name":"histone H3-S10 phosphorylation of chromosome condensation","type":"exact"}],"termid":"GO:2000775"}


id: GO:0075512
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.","definition_xrefs":["GOC:jl","VZ:957","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor-mediated endocytosis of virus by host cell","termid":"GO:0019065"},{"relation_name":"is_a","term_name":"clathrin-dependent endocytosis","termid":"GO:0072583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"clathrin-dependent endocytosis of virus by host cell","secondary_identifiers":["GO:0075516"],"synonyms":[{"name":"clathrin-mediated endocytosis of virus by host cell","type":"exact"},{"name":"viral entry into host cell via clathrin-mediated endocytosis","type":"related"},{"name":"viral entry into host cell via clathrin-mediated endocytosis followed by endosome lysis","type":"narrow"},{"name":"viral penetration via clathrin-mediated endocytosis","type":"exact"}],"termid":"GO:0075512"}


id: FYPO:0001013
data:
  {"alleles_by_uniquename":{"SJAG_00370:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00370","name":"erg1delta","uniquename":"SJAG_00370:allele-1"},"SJAG_01242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01242","name":"vps32delta","uniquename":"SJAG_01242:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_01906:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01906","name":"nem1delta","uniquename":"SJAG_01906:allele-1"},"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"},"SJAG_02763:allele-2":{"allele_type":"amino_acid_mutation","description":"D422E,D424E","gene_uniquename":"SJAG_02763","name":"ned1cat","synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"},"SJAG_02763:allele-4":{"allele_type":"amino_acid_mutation","description":"S235E; S651E","gene_uniquename":"SJAG_02763","name":"ned1S235E/S651E","synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"},"SJAG_02763:allele-5":{"allele_type":"amino_acid_mutation","description":"S499E; S538E; T620E; T638E; S651E","gene_uniquename":"SJAG_02763","name":"ned1-5E","uniquename":"SJAG_02763:allele-5"},"SJAG_03360:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03360","name":"shc1delta","uniquename":"SJAG_03360:allele-1"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"},"SJAG_03891:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03891","name":"alx1delta","uniquename":"SJAG_03891:allele-1"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"},"SJAG_03940:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03940","name":"nem2delta","uniquename":"SJAG_03940:allele-1"},"SJAG_04284:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04284","name":"nup61delta","uniquename":"SJAG_04284:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"},"SJAG_05207:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05207","name":"cmp7delta","uniquename":"SJAG_05207:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121234,121233],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006545"},{"annotations":[121053,121051,121046,121100],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0003779"},{"annotations":[121070],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000815"},{"annotations":[121274,121101,121273,121280,121325,121326,121281,121333],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007772"},{"annotations":[121242,121245,121254,121241,121249,121257],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001556"},{"annotations":[121064],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0003976"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cellular membrane organization is abnormal. Cellular membrane organization results in the assembly, arrangement of constituent parts, or disassembly of a lipid bilayer membrane, such as the plasma membrane or an organelle membrane.","definition_xrefs":["PomBase:mah","GO:0061024"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular component organization","termid":"FYPO:0000335"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00370":null,"SJAG_01242":null,"SJAG_01745":null,"SJAG_01906":null,"SJAG_02763":null,"SJAG_03360":null,"SJAG_03449":null,"SJAG_03891":null,"SJAG_03892":null,"SJAG_03940":null,"SJAG_04284":null,"SJAG_04464":null,"SJAG_05207":null},"genotype_count":18,"genotypes_by_uniquename":{"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]},"alx1delta":{"display_name":"alx1delta","display_uniquename":"alx1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03891:allele-1","expression":"Null"}]}]},"cmp7delta":{"display_name":"cmp7delta","display_uniquename":"cmp7delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]}]},"erg1delta":{"display_name":"erg1delta","display_uniquename":"erg1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00370:allele-1","expression":"Null"}]}]},"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]},"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type":{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]},"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1-5E(S499E; S538E; T620E; T638E; S651E aa)","display_uniquename":"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-5","expression":"Not assayed or wild type"}]}]},"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1S235E/S651E(S235E; S651E aa)","display_uniquename":"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-4","expression":"Not assayed or wild type"}]}]},"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1cat(D422E,D424E aa)","display_uniquename":"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-2","expression":"Not assayed or wild type"}]}]},"ned1delta":{"display_name":"ned1delta","display_uniquename":"ned1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}]},"nem1delta":{"display_name":"nem1delta","display_uniquename":"nem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01906:allele-1","expression":"Null"}]}]},"nem2delta":{"display_name":"nem2delta","display_uniquename":"nem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03940:allele-1","expression":"Null"}]}]},"nup61delta":{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"shc1delta":{"display_name":"shc1delta","display_uniquename":"shc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03360:allele-1","expression":"Null"}]}]},"vps32delta":{"display_name":"vps32delta","display_uniquename":"vps32delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01242:allele-1","expression":"Null"}]}]},"vps4delta":{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal membrane organization","references_by_uniquename":{"PMID:21802294":null,"PMID:24184107":null,"PMID:26774782":null,"PMID:28954740":null,"PMID:32109380":null,"PMID:32243490":null,"PMID:40195311":null},"single_locus_annotated_genes":["SJAG_03940","SJAG_03449","SJAG_01906","SJAG_03892","SJAG_03891","SJAG_01745","SJAG_04284","SJAG_04464","SJAG_00370","SJAG_05207","SJAG_01242","SJAG_03360","SJAG_02763"],"single_locus_genotype_uniquenames":["nem1delta","nup61delta","ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","vps32delta","man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","lem2delta","cmp7delta","erg1delta","ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","ned1delta","Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","alx1delta","vps4delta","man1delta","ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","shc1delta","nem2delta"],"synonyms":[{"name":"abnormal cellular membrane organization","type":"exact"},{"name":"abnormal membrane organisation","type":"exact"}],"termid":"FYPO:0001013","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYPO:0000815":null,"FYPO:0001556":null,"FYPO:0003779":null,"FYPO:0003976":null,"FYPO:0006545":null,"FYPO:0007772":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"FYPO_EXT:0000003":null}}


id: PR:O74533
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cytochrome b-c1 complex subunit 7 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04865","PRO:DNx","PANTHER:PTHR12022:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b-c1 complex subunit 7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC737.02c","secondary_identifiers":["UniProtKB:O74533"],"synonyms":[{"name":"Spom972h-UQCRB","type":"exact"},{"name":"complex III subunit 7 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquinol-cytochrome c reductase complex 14 kDa protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74533"}


id: PBO:0038512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily D member 3","termid":"PBO:0038512"}


id: GO:0034941
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pryrole-2-carboxylate + H+ = pyrrole + CO2.","definition_xrefs":["UM-BBD_reactionID:r0970"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"pyrrole-2-carboxylate decarboxylase activity","secondary_identifiers":["EC:4.1.1.93"],"termid":"GO:0034941"}


id: PATO:0000162
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000162 absolute rate (obsolete PATO:0000162)","termid":"PATO:0000162"}


id: MONDO:0011708
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal dominant nonsyndromic deafness in which the cause of the disease is a mutation in the TMC1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0019497"],"is_obsolete":false,"name":"autosomal dominant nonsyndromic hearing loss 36","secondary_identifiers":["GARD:18115","MESH:C564675","UMLS:C1847626","OMIM:606705","MEDGEN:376173","DOID:0110563"],"synonyms":[{"name":"DFNA36","type":"narrow"},{"name":"TMC1 autosomal dominant nonsyndromic deafness","type":"narrow"},{"name":"autosomal dominant deafness 36","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness 36","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness caused by mutation in TMC1","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness type 36","type":"narrow"},{"name":"deafness, autosomal dominant 36","type":"narrow"},{"name":"deafness, autosomal dominant type 36","type":"narrow"}],"termid":"MONDO:0011708","xrefs":{"Monarch":{"xref_id":"0011708"}}}


id: PBO:0063186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate carboxylase","termid":"PBO:0063186"}


id: PBO:0065303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 16","termid":"PBO:0065303"}


id: PBO:0078618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 67","termid":"PBO:0078618"}


id: PBO:0004463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase Dbp3 (predicted)","termid":"PBO:0004463"}


id: GO:1901215
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of neuron death.","definition_xrefs":["GOC:TermGenie","GOC:rph"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of neuron death (obsolete GO:1901215)","synonyms":[{"name":"down regulation of neuron cell death","type":"exact"},{"name":"down regulation of neuron death","type":"exact"},{"name":"down regulation of neuronal cell death","type":"exact"},{"name":"down-regulation of neuron cell death","type":"exact"},{"name":"down-regulation of neuron death","type":"exact"},{"name":"down-regulation of neuronal cell death","type":"exact"},{"name":"downregulation of neuron cell death","type":"exact"},{"name":"downregulation of neuron death","type":"exact"},{"name":"downregulation of neuronal cell death","type":"exact"},{"name":"inhibition of neuron cell death","type":"narrow"},{"name":"inhibition of neuron death","type":"narrow"},{"name":"inhibition of neuronal cell death","type":"narrow"},{"name":"negative regulation of neuron cell death","type":"exact"},{"name":"negative regulation of neuronal cell death","type":"exact"}],"termid":"GO:1901215"}


id: PBO:0060182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucin 3A, cell surface associated","termid":"PBO:0060182"}


id: GO:0009002
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (Ac)2-L-Lys-D-alanyl-D-alanine + H2O = (Ac)2-L-Lys-D-alanine + D-alanine.","definition_xrefs":["EC:3.4.16.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine-type carboxypeptidase activity","termid":"GO:0004185"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0140096","GO:0008233","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"serine-type D-Ala-D-Ala carboxypeptidase activity","secondary_identifiers":["MetaCyc:3.4.16.4-RXN"],"synonyms":[{"name":"D-alanine carboxypeptidase","type":"broad"},{"name":"D-alanyl carboxypeptidase activity","type":"related"},{"name":"D-alanyl-D-alanine carboxypeptidase activity","type":"related"},{"name":"D-alanyl-D-alanine-carboxypeptidase activity","type":"related"},{"name":"D-alanyl-D-alanine-cleaving peptidase activity","type":"related"},{"name":"D-alanyl-D-alanine-cleaving-peptidase activity","type":"related"},{"name":"DD-carboxypeptidase","type":"broad"},{"name":"DD-peptidase activity","type":"related"},{"name":"DD-transpeptidase activity","type":"related"}],"termid":"GO:0009002"}


id: GO:1901685
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving glutathione derivative.","definition_xrefs":["GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"glutathione derivative metabolic process","synonyms":[{"name":"glutathione derivative metabolism","type":"exact"}],"termid":"GO:1901685"}


id: PBO:0043693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 5A pseudogene 2","termid":"PBO:0043693"}


id: PBO:0064076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 110","termid":"PBO:0064076"}


id: PBO:0061418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NPY2R antisense RNA 1","termid":"PBO:0061418"}


id: MONDO:0014560
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any amelogenesis imperfecta in which the cause of the disease is a mutation in the AMBN gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amelogenesis imperfecta type 1","termid":"MONDO:0015047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amelogenesis imperfecta type 1F","secondary_identifiers":["DOID:0110065","GARD:16076","MEDGEN:898597","OMIM:616270","UMLS:C4225394"],"synonyms":[{"name":"AI1F","type":"exact"},{"name":"AMBN amelogenesis imperfecta","type":"exact"},{"name":"amelogenesis imperfecta caused by mutation in AMBN","type":"exact"},{"name":"amelogenesis imperfecta hypoplastic type IF","type":"exact"},{"name":"amelogenesis imperfecta type IF","type":"exact"},{"name":"amelogenesis imperfecta, hypoplastic type 1F","type":"related"},{"name":"amelogenesis imperfecta, type 1F","type":"related"},{"name":"amelogenesis imperfecta, type IF","type":"related"}],"termid":"MONDO:0014560","xrefs":{"Monarch":{"xref_id":"0014560"}}}


id: GO:0006572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tyrosine metabolic process","termid":"GO:0006570"},{"relation_name":"is_a","term_name":"aromatic amino acid family catabolic process","termid":"GO:0009074"},{"relation_name":"is_a","term_name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process","termid":"GO:1902222"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"L-tyrosine catabolic process","secondary_identifiers":["Reactome:R-HSA-8963684"],"synonyms":[{"name":"tyrosine breakdown","type":"exact"},{"name":"tyrosine catabolism","type":"exact"},{"name":"tyrosine degradation","type":"exact"}],"termid":"GO:0006572"}


id: GO:0070375
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A MAPK cascade containing at least the ERK5 MAP kinase (MAPK7; also called BMK1). It starts with the activation of a MAP3K, and the consecutive activation of a MPK2K and of ERK5. The cascade can also contain an additional tier: the upstream MAP4K. The kinases in each tier phosphorylate and activate the kinases in the downstream tier. The ERK5 cascade is activated by stress, mitogens, and by G protein-coupled receptors, and results in cellular responses such as cell growth, cell differentiation and development.","definition_xrefs":["PMID:23125017","PMID:16880823","PMID:28903453","PMID:20811974","PMID:16376520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MAPK cascade","termid":"GO:0000165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"ERK5 cascade","synonyms":[{"name":"BMK cascade","type":"exact"},{"name":"BMK signaling pathway","type":"exact"},{"name":"BMK signalling pathway","type":"exact"},{"name":"BMK1 cascade","type":"exact"},{"name":"ERK5 signaling pathway","type":"exact"},{"name":"MAPK7 cascade","type":"exact"},{"name":"big MAP kinase signaling cascade","type":"exact"},{"name":"extracellular signal-regulated kinase 5 cascade","type":"exact"}],"termid":"GO:0070375"}


id: GO:1903168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of pyrroline-5-carboxylate reductase activity.","definition_xrefs":["GO_REF:0000059","GOC:PARL","GOC:TermGenie","PMID:23743200","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of pyrroline-5-carboxylate reductase activity (obsolete GO:1903168)","synonyms":[{"name":"activation of 1-pyrroline-5-carboxylate reductase activity","type":"narrow"},{"name":"activation of L-proline oxidase activity","type":"narrow"},{"name":"activation of L-proline-NAD(P)+ 5-oxidoreductase activity","type":"narrow"},{"name":"activation of L-proline:NAD(P)+ 5-oxidoreductase activity","type":"narrow"},{"name":"activation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity","type":"narrow"},{"name":"activation of P5CR activity","type":"narrow"},{"name":"activation of pyrroline-5-carboxylate reductase activity","type":"narrow"},{"name":"positive regulation of 1-pyrroline-5-carboxylate reductase activity","type":"exact"},{"name":"positive regulation of L-proline oxidase activity","type":"exact"},{"name":"positive regulation of L-proline-NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"positive regulation of L-proline:NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"positive regulation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity","type":"exact"},{"name":"positive regulation of P5CR activity","type":"exact"},{"name":"up regulation of 1-pyrroline-5-carboxylate reductase activity","type":"exact"},{"name":"up regulation of L-proline oxidase activity","type":"exact"},{"name":"up regulation of L-proline-NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"up regulation of L-proline:NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"up regulation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity","type":"exact"},{"name":"up regulation of P5CR activity","type":"exact"},{"name":"up regulation of pyrroline-5-carboxylate reductase activity","type":"exact"},{"name":"up-regulation of 1-pyrroline-5-carboxylate reductase activity","type":"exact"},{"name":"up-regulation of L-proline oxidase activity","type":"exact"},{"name":"up-regulation of L-proline-NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"up-regulation of L-proline:NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"up-regulation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity","type":"exact"},{"name":"up-regulation of P5CR activity","type":"exact"},{"name":"up-regulation of pyrroline-5-carboxylate reductase activity","type":"exact"},{"name":"upregulation of 1-pyrroline-5-carboxylate reductase activity","type":"exact"},{"name":"upregulation of L-proline oxidase activity","type":"exact"},{"name":"upregulation of L-proline-NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"upregulation of L-proline:NAD(P)+ 5-oxidoreductase activity","type":"exact"},{"name":"upregulation of NADPH-L-delta1-pyrroline carboxylic acid reductase activity","type":"exact"},{"name":"upregulation of P5CR activity","type":"exact"},{"name":"upregulation of pyrroline-5-carboxylate reductase activity","type":"exact"}],"termid":"GO:1903168"}


id: MONDO:0013652
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any narcolepsy in which the cause of the disease is a mutation in the MOG gene.","definition_xrefs":["MONDO:design_pattern"],"direct_ancestors":[{"relation_name":"is_a","term_name":"narcolepsy-cataplexy syndrome","termid":"MONDO:0016158"},{"relation_name":"is_a","term_name":"hereditary narcolepsy","termid":"MONDO:0100554"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"narcolepsy 7","secondary_identifiers":["GARD:15783","MEDGEN:481896","OMIM:614250","UMLS:C3280266"],"synonyms":[{"name":"MOG narcolepsy","type":"exact"},{"name":"NRCLP7","type":"related"},{"name":"narcolepsy 7","type":"exact"},{"name":"narcolepsy caused by mutation in MOG","type":"exact"},{"name":"narcolepsy type 7","type":"exact"}],"termid":"MONDO:0013652","xrefs":{"Monarch":{"xref_id":"0013652"}}}


id: PBO:0078951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Arg (anticodon TCT) 3-1","termid":"PBO:0078951"}


id: PBO:0052345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 2B","termid":"PBO:0052345"}


id: MONDO:0011722
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intellectual disability-obesity-prognathism-eye and skin anomalies syndrome","secondary_identifiers":["UMLS:C1847522","MEDGEN:376145","OMIM:606772","Orphanet:397973","MESH:C564660","GARD:17648"],"synonyms":[{"name":"MOMES syndrome","type":"exact"},{"name":"Momes syndrome","type":"related"},{"name":"intellectual disability, obesity, mandibular prognathism, and eye and skin anomalies","type":"related"},{"name":"mental retardation, obesity, mandibular prognathism, and eye and skin anomalies","type":"related"}],"termid":"MONDO:0011722","xrefs":{"Monarch":{"xref_id":"0011722"}}}


id: PBO:0090481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-A chaperone, CHD family Hrp1","termid":"PBO:0090481"}


id: FYPO:0003327
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form cytoplasmic microtubules that are curved, i.e. follow a smooth bend rather than a straight line, during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton morphology during mitotic interphase","termid":"FYPO:0003625"},{"relation_name":"is_a","term_name":"curved microtubules","termid":"FYPO:0004862"},{"relation_name":"is_a","term_name":"abnormal interphase microtubules","termid":"FYPO:0006101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000054","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0002399"],"is_obsolete":false,"name":"curved interphase microtubules","synonyms":[{"name":"curved cytoplasmic microtubules during mitotic interphase","type":"exact"},{"name":"curved interphase cytoplasmic microtubules","type":"exact"},{"name":"curved interphase microtubules during mitotic cell cycle","type":"related"},{"name":"curved interphase microtubules during vegetative growth","type":"exact"}],"termid":"FYPO:0003327"}


id: PBO:0064830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP1R9A antisense RNA 1","termid":"PBO:0064830"}


id: FYPO:0008204
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell exhibits randomly misoriented actin and myosin II filaments, eventually forming a regular orthogonal actomyosin contractile ring. Although the onset of filaments assembly is not delayed, the cell takes more time complete the formation of an orthogonal actomyosin contractile ring.","direct_ancestors":[{"relation_name":"is_a","term_name":"delayed onset of actomyosin contractile ring assembly","termid":"FYPO:0000729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000032","FYPO:0000002","FYPO:0001320","FYPO:0000631","FYPO:0004803","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"delayed orthogonal actomyosin contractile ring assembly from randomly oriented actomyosin filaments","termid":"FYPO:0008204"}


id: GO:0022005
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process occurring before the brain has been specified along the neural axis that is required for the midbrain-hindbrain boundary to attain its fully functional state. The midbrain-hindbrain domain of the embryonic brain is comprised of the mesencephalic vesicle and the first rhombencephalic vesicle at early somitogenesis stages. An organizing center at the boundary patterns the midbrain and hindbrain primordia of the neural plate.","definition_xrefs":["GOC:cls","PMID:15541513","GOC:dph","GO_REF:0000021","GOC:jid","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"},{"relation_name":"part_of","term_name":"midbrain-hindbrain boundary maturation","termid":"GO:0021732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"midbrain-hindbrain boundary maturation during neural plate development","synonyms":[{"name":"midbrain-hindbrain boundary maturation involved in neural plate development","type":"related"}],"termid":"GO:0022005"}


id: MONDO:0003403
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A classification of testicular cancers that arise in specialized sex cells called germ cells. Nonseminomas include embryonal carcinoma, teratoma, choriocarcinoma, and yolk sac tumor.","definition_xrefs":["NCIT:C5027"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant testicular germ cell tumor","termid":"MONDO:0003510"},{"relation_name":"is_a","term_name":"testicular non-seminomatous germ cell tumor","termid":"MONDO:0006447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"testicular non-seminomatous germ cell cancer","secondary_identifiers":["DOID:5345","MEDGEN:233162","UMLS:C1334625"],"synonyms":[{"name":"malignant non-seminomatous germ cell cancer of testis","type":"exact"},{"name":"malignant non-seminomatous germ cell cancer of the testis","type":"exact"},{"name":"malignant non-seminomatous germ cell neoplasm of testis","type":"exact"},{"name":"malignant non-seminomatous germ cell neoplasm of the testis","type":"exact"},{"name":"malignant non-seminomatous germ cell tumor of testis","type":"exact"},{"name":"malignant non-seminomatous germ cell tumor of the testis","type":"exact"},{"name":"malignant non-seminomatous germ cell tumour of testis","type":"exact"},{"name":"malignant non-seminomatous germ cell tumour of the testis","type":"exact"},{"name":"malignant testicular non-seminomatous germ cell neoplasm","type":"exact"},{"name":"malignant testicular non-seminomatous germ cell tumor","type":"exact"},{"name":"malignant testicular non-seminomatous germ cell tumour","type":"exact"},{"name":"testicular germ cell tumor non-seminomatous, malignant","type":"exact"},{"name":"testicular germ cell tumour non-seminomatous, malignant","type":"exact"},{"name":"testicular non-seminomatous germ cell cancer","type":"exact"},{"name":"testicular non-seminomatous germ cell tumor, malignant","type":"exact"},{"name":"testicular non-seminomatous malignant germ cell neoplasm","type":"exact"}],"termid":"MONDO:0003403","xrefs":{"Monarch":{"xref_id":"0003403"}}}


id: GO:0061668
data:
  {"annotated_genes":["SJAG_00231","SJAG_03773","SJAG_03155","SJAG_00659"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110224,103104,109030,113844],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902775"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of the mitochondrial ribosome and of its subunits.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribosome assembly","termid":"GO:0042255"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00231":null,"SJAG_00659":null,"SJAG_03155":null,"SJAG_03773":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0042254"],"is_obsolete":false,"name":"mitochondrial ribosome assembly","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061668","terms_by_termid":{"GO:1902775":null}}


id: MONDO:0017734
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Sialidosis is a lysosomal storage disease, belonging to the group of oligosaccharidoses or glycoproteinoses, with a wide clinical spectrum that is divided into two main clinical subtypes: sialidosis type I, the milder, non dysmorphic form of the disease characterized by gait abnormalities, progressive visual loss, bilateral macular cherry red spots and myoclonus, that presents in adolescence or adulthood (second or third decade of life); and sialidosis type II the more severe, early onset form, characterized by a progressive and severe mucopolysaccharidosis-like phenotype with coarse facies, visceromegaly, dysostosis multiplex, and developmental delay. Bilateral macular cherry red spots are also present. Sialidosis type II has been further divided into congenital (with hydrops fetalis), infantile and juvenile presentations.","definition_xrefs":["Orphanet:309294"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharidosis","termid":"MONDO:0019251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002561","MONDO:0005066","MONDO:0037792"],"is_obsolete":false,"name":"sialidosis","secondary_identifiers":["NORD:1713","NANDO:1200116","MedDRA:10058800","MEDGEN:120621","NANDO:2200556","SCTID:38795005","icd11.foundation:1180347697","UMLS:C0268226","GARD:21331"],"termid":"MONDO:0017734","xrefs":{"Monarch":{"xref_id":"0017734"}}}


id: GO:0031157
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the size of the aggregate formed during sorocarp formation.","definition_xrefs":["GOC:mah","GOC:mtg_sensu","PMID:4338436","GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of aggregation involved in sorocarp development","termid":"GO:0060176"},{"relation_name":"is_a","term_name":"regulation of biological quality","termid":"GO:0065008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of aggregate size involved in sorocarp development","synonyms":[{"name":"regulation of aggregation during fruiting body biosynthesis","type":"related"},{"name":"regulation of aggregation during fruiting body formation","type":"related"}],"termid":"GO:0031157"}


id: PBO:0053380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 307","termid":"PBO:0053380"}


id: PBO:0065098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase cAMP-dependent type I regulatory subunit alpha pseudogene 1","termid":"PBO:0065098"}


id: GO:0032686
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of hepatocyte growth factor production.","definition_xrefs":["GOC:mah","PMID:1838014"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of hepatocyte growth factor production","termid":"GO:0032646"},{"relation_name":"is_a","term_name":"negative regulation of protein metabolic process","termid":"GO:0051248"},{"relation_name":"negatively_regulates","term_name":"hepatocyte growth factor production","termid":"GO:0032605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of hepatocyte growth factor production","secondary_identifiers":["GO:0048178"],"synonyms":[{"name":"down regulation of hepatocyte growth factor production","type":"exact"},{"name":"down-regulation of hepatocyte growth factor production","type":"exact"},{"name":"downregulation of hepatocyte growth factor production","type":"exact"},{"name":"inhibition of hepatocyte growth factor production","type":"narrow"},{"name":"negative regulation of HGF production","type":"exact"},{"name":"negative regulation of hepatocyte growth factor biosynthetic process","type":"narrow"},{"name":"negative regulation of scatter factor production","type":"exact"}],"termid":"GO:0032686"}


id: PBO:0039949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ariadne RBR E3 ubiquitin protein ligase 2","termid":"PBO:0039949"}


id: GO:0030308
data:
  {"annotated_genes":["SJAG_02169"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92537],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051517"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, extent or direction of cell growth.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell growth","termid":"GO:0001558"},{"relation_name":"is_a","term_name":"negative regulation of growth","termid":"GO:0045926"},{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"negatively_regulates","term_name":"cell growth","termid":"GO:0016049"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02169":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell growth","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of cell growth","type":"exact"},{"name":"down-regulation of cell growth","type":"exact"},{"name":"downregulation of cell growth","type":"exact"},{"name":"inhibition of cell growth","type":"narrow"}],"termid":"GO:0030308","terms_by_termid":{"GO:0051517":null}}


id: PBO:0045536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPPA2 upstream binding RNA","termid":"PBO:0045536"}


id: MONDO:0011300
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myopia","termid":"MONDO:0001384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"myopia 3, autosomal dominant","secondary_identifiers":["UMLS:C1864111","OMIM:603221","MEDGEN:400454","MESH:C566397"],"synonyms":[{"name":"MYP3","type":"exact"},{"name":"myopia 3, autosomal dominant","type":"exact"},{"name":"myopia-3","type":"exact"}],"termid":"MONDO:0011300","xrefs":{"Monarch":{"xref_id":"0011300"}}}


id: MONDO:0017740
data:
  {"annotated_genes":["SJAG_03056","SJAG_00747","SJAG_01209","SJAG_01950","SJAG_03311","SJAG_02648","SJAG_00437","SJAG_04363","SJAG_01069","SJAG_02102","SJAG_03656","SJAG_03774","SJAG_04952","SJAG_00334","SJAG_04697","SJAG_02783","SJAG_04127","SJAG_04096","SJAG_00924"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87414],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012052"},{"annotations":[88865],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013349"},{"annotations":[87529],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011783"},{"annotations":[88671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011933"},{"annotations":[88294],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010998"},{"annotations":[87017],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011291"},{"annotations":[86844],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011969"},{"annotations":[88227],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012117"},{"annotations":[87601],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014248"},{"annotations":[87194],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014543"},{"annotations":[88214],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013789"},{"annotations":[88684],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010472"},{"annotations":[86810],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011964"},{"annotations":[89065],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009890"},{"annotations":[88376],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011629"},{"annotations":[88116],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011257"},{"annotations":[89009],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013968"},{"annotations":[86788],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008907"},{"annotations":[88097],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012783"},{"annotations":[87439],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014270"},{"annotations":[87442],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014271"},{"annotations":[87942],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013870"}]},"cv_name":"mondo","definition":"A disease that has its basis in the disruption of protein N-linked glycosylation.","definition_xrefs":["MONDO:patterns/basis_in_disruption_of_process"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation","termid":"MONDO:0015286"},{"relation_name":"is_a","term_name":"glycoprotein metabolism disease","termid":"MONDO:0045010"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00334":null,"SJAG_00437":null,"SJAG_00747":null,"SJAG_00924":null,"SJAG_01069":null,"SJAG_01209":null,"SJAG_01950":null,"SJAG_02102":null,"SJAG_02648":null,"SJAG_02783":null,"SJAG_03056":null,"SJAG_03311":null,"SJAG_03656":null,"SJAG_03774":null,"SJAG_04096":null,"SJAG_04127":null,"SJAG_04363":null,"SJAG_04697":null,"SJAG_04952":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"disorder of protein N-glycosylation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["icd11.foundation:292641586","MEDGEN:1826111","UMLS:C5681044","Orphanet:309347","GARD:21335"],"synonyms":[{"name":"disorder of protein N-linked glycosylation","type":"exact"},{"name":"protein N-linked glycosylation disease","type":"exact"}],"termid":"MONDO:0017740","terms_by_termid":{"MONDO:0008907":null,"MONDO:0009890":null,"MONDO:0010472":null,"MONDO:0010998":null,"MONDO:0011257":null,"MONDO:0011291":null,"MONDO:0011629":null,"MONDO:0011783":null,"MONDO:0011933":null,"MONDO:0011964":null,"MONDO:0011969":null,"MONDO:0012052":null,"MONDO:0012117":null,"MONDO:0012783":null,"MONDO:0013349":null,"MONDO:0013789":null,"MONDO:0013870":null,"MONDO:0013968":null,"MONDO:0014248":null,"MONDO:0014270":null,"MONDO:0014271":null,"MONDO:0014543":null},"xrefs":{"Monarch":{"xref_id":"0017740"}}}


id: GO:0018402
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Chondroitin sulfate components are covalently linked to a core glycoprotein via O-glycosidic linkages between xylose and serine residues.","definition_xrefs":["RESID:AA0208"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-chondroitin sulfate linkage via chondroitin sulfate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine (obsolete GO:0018402)","synonyms":[{"name":"protein-chondroitin sulphate linkage via chondroitin sulphate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine","type":"exact"}],"termid":"GO:0018402"}


id: PBO:0079279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TTK protein kinase","termid":"PBO:0079279"}


id: PBO:0086237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that interacts with Vps4p and has a role in vacuolar sorting; stimulates the ATPase activity of Vps4; localizes to endosomes in a Vps4-dependent manner; overexpression causes canavanine sensitivity and confers a partial class D vacuole morphology","termid":"PBO:0086237"}


id: GO:0007392
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Events that occur at the start of dorsal closure.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"dorsal closure","termid":"GO:0007391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"initiation of dorsal closure","termid":"GO:0007392"}


id: PR:Q03319
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent RNA helicase DHX33 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00324"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase prh1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2G11.11c","secondary_identifiers":["UniProtKB:Q03319"],"synonyms":[{"name":"Spom972h-DHX33","type":"exact"}],"termid":"PR:Q03319"}


id: PBO:0047737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FNDC1 intronic transcript 1","termid":"PBO:0047737"}


id: PBO:0069526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 795, pseudogene","termid":"PBO:0069526"}


id: GO:0033347
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a tetrose, any monosaccharide with a chain of four carbon atoms in the molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosaccharide metabolic process","termid":"GO:0005996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"tetrose metabolic process","synonyms":[{"name":"tetrose metabolism","type":"exact"}],"termid":"GO:0033347"}


id: PBO:0029354
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_chromosome_at_long_terminal_repeat","termid":"PBO:0029354"}


id: PBO:0048635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gap junction protein alpha 4","termid":"PBO:0048635"}


id: GO:0051593
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a folic acid stimulus.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to vitamin","termid":"GO:0033273"},{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to folic acid","synonyms":[{"name":"cellular response to folate","type":"exact"},{"name":"cellular response to vitamin B9","type":"exact"}],"termid":"GO:0051593"}


id: MONDO:0041775
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"iris disorder","termid":"MONDO:0002289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"intraoperative floppy iris syndrome","secondary_identifiers":["ICD10CM:H21.81","UMLS:C1688637","SCTID:418801006","MEDGEN:739048"],"synonyms":[{"name":"intraoperative floppy iris syndrome","type":"exact"}],"termid":"MONDO:0041775","xrefs":{"Monarch":{"xref_id":"0041775"}}}


id: PBO:0042759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 41","termid":"PBO:0042759"}


id: GO:0008398
data:
  {"annotated_genes":["SJAG_03750"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90293],"is_not":false,"summary":null,"term":"GO:0008398"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 14alpha-methyl steroid + 3 O2 + 3 reduced [NADPH-hemoprotein reductase] = a delta14 steroid + formate + 4 H+ + 4 H2O + 3 oxidized [NADPH-hemoprotein reductase].","definition_xrefs":["RHEA:54028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"},{"relation_name":"is_a","term_name":"demethylase activity","termid":"GO:0032451"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03750":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"sterol 14-demethylase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:1.14.13.70-RXN","EC:1.14.14.154"],"synonyms":[{"name":"cytochrome P450 51 activity","type":"narrow"},{"name":"cytochrome P450 CYP51","type":"narrow"},{"name":"lanosterol 14-alpha-demethylase activity","type":"narrow"},{"name":"lanosterol 14-demethylase activity","type":"narrow"},{"name":"lanosterol 14alpha-demethylase activity","type":"related"},{"name":"obtusufoliol 14-demethylase activity","type":"narrow"},{"name":"sterol 14-alpha-demethylase activity","type":"related"},{"name":"sterol 14alpha-demethylase activity","type":"related"}],"termid":"GO:0008398","terms_by_termid":{"GO:0008398":null}}


id: GO:0045042
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The conservative import of proteins into the mitochondrial intermembrane space. The entire protein enters the matrix, and then the second targeting sequence directs the protein, presumably bound to a matrix protein, across the inner membrane to the intermembrane space.","definition_xrefs":["ISBN:0716731363"],"gene_count":0,"genotype_count":0,"name":"obsolete protein import into mitochondrial intermembrane space, conservative (obsolete GO:0045042)","synonyms":[{"name":"conservative mitochondrial IMS protein import","type":"exact"},{"name":"conservative mitochondrial intermembrane space protein import","type":"exact"},{"name":"conservative protein transport into mitochondrial IMS","type":"exact"},{"name":"conservative protein transport into mitochondrial intermembrane space","type":"exact"},{"name":"protein import into mitochondrial IMS, conservative","type":"exact"},{"name":"protein import into mitochondrial intermembrane space, conservative","type":"exact"},{"name":"protein transport into mitochondrial IMS, conservative","type":"exact"},{"name":"protein transport into mitochondrial intermembrane space, conservative","type":"exact"}],"termid":"GO:0045042"}


id: PBO:0006189
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-not_during","termid":"PBO:0006189"}


id: PBO:0045770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extracellular matrix protein 1 pseudogene 1","termid":"PBO:0045770"}


id: PBO:0062282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily J member 2","termid":"PBO:0062282"}


id: PBO:0077860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tropomyosin 3 pseudogene 1","termid":"PBO:0077860"}


id: MONDO:0043187
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pulmonary artery agenesis (obsolete MONDO:0043187)","termid":"MONDO:0043187","xrefs":{"Monarch":{"xref_id":"0043187"}}}


id: PBO:0058281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4658","termid":"PBO:0058281"}


id: PBO:0051067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 4/OR15-4A (non-functional)","termid":"PBO:0051067"}


id: PBO:0090056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII-coated vesicle component Erp2/3/4","termid":"PBO:0090056"}


id: SO:0002166
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A ref_miRNA (RefSeq-miRNA) sequence is assigned at the creation of a new mature miRNA entry in a database. The ref_miRNA sequence designation remains unchanged even if a different isomiR is later shown to be expressed at a higher level. A ref_miRNA can be produced by one or multiple pre-miRNA.","definition_xrefs":["PMID:26453491"],"direct_ancestors":[{"relation_name":"is_a","term_name":"miRNA","termid":"SO:0000276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ref_miRNA","synonyms":[{"name":"RefSeq miRNA","type":"exact"},{"name":"RefSeq-miRNA","type":"exact"},{"name":"ref miRNA","type":"exact"}],"termid":"SO:0002166"}


id: GO:0106271
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-arabinose + NADP+ = D-arabinono-1,4-lactone + NADPH.","definition_xrefs":["RHEA:21892"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-arabinose 1-dehydrogenase [NAD(P)+] activity","termid":"GO:0045290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"D-arabinose 1-dehydrogenase (NADP+) activity","termid":"GO:0106271"}


id: PBO:0053381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 308","termid":"PBO:0053381"}


id: MONDO:0002103
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A category of psychiatric disorders which are characterized by physical or psychological symptoms that are intentionally produced in order to assume the sick role; there is no external incentive for the behavior, such as economic gain or avoiding legal responsibility, and the person is unaware of any self-motivating factors.","definition_xrefs":["NCIT:C92198"],"direct_ancestors":[{"relation_name":"is_a","term_name":"psychiatric disorder","termid":"MONDO:0002025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"factitious disorder","secondary_identifiers":["ICD9:300.16","MEDGEN:4632","DOID:1766","MESH:D009110","ICD9:300.19","SCTID:50705009","UMLS:C0015480"],"synonyms":[{"name":"Munchausen syndrome","type":"exact"}],"termid":"MONDO:0002103","xrefs":{"Monarch":{"xref_id":"0002103"}}}


id: PBO:0053528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 525","termid":"PBO:0053528"}


id: MONDO:0957960
data:
  {"annotated_genes":["SJAG_03371"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87830],"is_not":false,"summary":null,"term":"MONDO:0957960"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03371":null},"genotype_count":0,"is_obsolete":false,"name":"Long-Olsen-Distelmaier syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:620609","UMLS:C5882721","MEDGEN:1847052"],"termid":"MONDO:0957960","terms_by_termid":{"MONDO:0957960":null},"xrefs":{"Monarch":{"xref_id":"0957960"}}}


id: MONDO:0002553
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm that affects the cerebellopontine angle. Representative examples include vestibular schwannoma and meningioma.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"brainstem cancer","termid":"MONDO:0002912"},{"relation_name":"is_a","term_name":"brain neoplasm","termid":"MONDO:0021211"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebellopontine angle tumor","secondary_identifiers":["NCIT:C5414","SCTID:126947009","UMLS:C0474740","MEDGEN:99181","DOID:3200"],"synonyms":[{"name":"C-P angle neoplasm","type":"exact"},{"name":"C-P angle tumor","type":"exact"},{"name":"C-P angle tumour","type":"exact"},{"name":"cerebellar Pontine angle neoplasm","type":"exact"},{"name":"cerebellar Pontine angle tumor","type":"exact"},{"name":"cerebellar Pontine angle tumour","type":"exact"},{"name":"cerebellopontine angle neoplasm","type":"exact"},{"name":"cerebellopontine angle neoplasm (disease)","type":"exact"},{"name":"cerebellopontine angle tumor","type":"exact"},{"name":"neoplasm of C-P angle","type":"exact"},{"name":"neoplasm of cerebellar Pontine angle","type":"exact"},{"name":"neoplasm of cerebellopontine angle","type":"exact"},{"name":"neoplasm of the C-P angle","type":"exact"},{"name":"neoplasm of the cerebellar Pontine angle","type":"exact"},{"name":"neoplasm of the cerebellopontine angle","type":"exact"},{"name":"tumor of C-P angle","type":"exact"},{"name":"tumor of cerebellar Pontine angle","type":"exact"},{"name":"tumor of cerebellopontine angle","type":"exact"},{"name":"tumor of the C-P angle","type":"exact"},{"name":"tumor of the cerebellar Pontine angle","type":"exact"},{"name":"tumor of the cerebellopontine angle","type":"exact"},{"name":"tumour of C-P angle","type":"exact"},{"name":"tumour of cerebellar Pontine angle","type":"exact"},{"name":"tumour of cerebellopontine angle","type":"exact"},{"name":"tumour of the C-P angle","type":"exact"},{"name":"tumour of the cerebellar Pontine angle","type":"exact"},{"name":"tumour of the cerebellopontine angle","type":"exact"}],"termid":"MONDO:0002553","xrefs":{"Monarch":{"xref_id":"0002553"}}}


id: GO:0047630
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-ADP-2-phosphoglycerate + H2O = 3-ADP-glycerate + phosphate.","definition_xrefs":["RHEA:15861"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787","GO:0016788"],"is_obsolete":false,"name":"ADP-phosphoglycerate phosphatase activity","secondary_identifiers":["EC:3.1.3.28","KEGG_REACTION:R03969","MetaCyc:ADP-PHOSPHOGLYCERATE-PHOSPHATASE-RXN"],"synonyms":[{"name":"3-(ADP)-2-phosphoglycerate phosphohydrolase activity","type":"related"},{"name":"ADPphosphoglycerate phosphatase activity","type":"related"},{"name":"adenosine diphosphate phosphoglycerate phosphatase activity","type":"related"}],"termid":"GO:0047630"}


id: GO:0035512
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The hydrolytic removal of the methyl group from one or more nucleotides within a DNA molecule.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete hydrolytic DNA demethylation (obsolete GO:0035512)","termid":"GO:0035512"}


id: GO:1900903
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of hexadecanal biosynthetic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of biosynthetic process","termid":"GO:0009890"},{"relation_name":"is_a","term_name":"regulation of hexadecanal biosynthetic process","termid":"GO:1900902"},{"relation_name":"is_a","term_name":"negative regulation of hexadecanal metabolic process","termid":"GO:1900906"},{"relation_name":"negatively_regulates","term_name":"hexadecanal biosynthetic process","termid":"GO:0006634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hexadecanal biosynthetic process","synonyms":[{"name":"down regulation of hexadecanal anabolism","type":"related"},{"name":"down regulation of hexadecanal biosynthesis","type":"related"},{"name":"down regulation of hexadecanal biosynthetic process","type":"exact"},{"name":"down regulation of hexadecanal formation","type":"related"},{"name":"down regulation of hexadecanal synthesis","type":"related"},{"name":"down regulation of palmitaldehyde biosynthesis","type":"related"},{"name":"down regulation of palmitaldehyde biosynthetic process","type":"related"},{"name":"down-regulation of hexadecanal anabolism","type":"related"},{"name":"down-regulation of hexadecanal biosynthesis","type":"related"},{"name":"down-regulation of hexadecanal biosynthetic process","type":"exact"},{"name":"down-regulation of hexadecanal formation","type":"related"},{"name":"down-regulation of hexadecanal synthesis","type":"related"},{"name":"down-regulation of palmitaldehyde biosynthesis","type":"related"},{"name":"down-regulation of palmitaldehyde biosynthetic process","type":"related"},{"name":"downregulation of hexadecanal anabolism","type":"related"},{"name":"downregulation of hexadecanal biosynthesis","type":"related"},{"name":"downregulation of hexadecanal biosynthetic process","type":"exact"},{"name":"downregulation of hexadecanal formation","type":"related"},{"name":"downregulation of hexadecanal synthesis","type":"related"},{"name":"downregulation of palmitaldehyde biosynthesis","type":"related"},{"name":"downregulation of palmitaldehyde biosynthetic process","type":"related"},{"name":"inhibition of hexadecanal anabolism","type":"narrow"},{"name":"inhibition of hexadecanal biosynthesis","type":"narrow"},{"name":"inhibition of hexadecanal biosynthetic process","type":"narrow"},{"name":"inhibition of hexadecanal formation","type":"narrow"},{"name":"inhibition of hexadecanal synthesis","type":"narrow"},{"name":"inhibition of palmitaldehyde biosynthesis","type":"narrow"},{"name":"inhibition of palmitaldehyde biosynthetic process","type":"narrow"},{"name":"negative regulation of hexadecanal anabolism","type":"related"},{"name":"negative regulation of hexadecanal biosynthesis","type":"related"},{"name":"negative regulation of hexadecanal formation","type":"related"},{"name":"negative regulation of hexadecanal synthesis","type":"related"},{"name":"negative regulation of palmitaldehyde biosynthesis","type":"related"},{"name":"negative regulation of palmitaldehyde biosynthetic process","type":"related"}],"termid":"GO:1900903"}


id: PBO:0077735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNS2 antisense RNA 1","termid":"PBO:0077735"}


id: MONDO:0004816
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A plasma cell neoplasm that is resistant to treatment.","definition_xrefs":["NCIT:C7813"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"plasma cell myeloma","termid":"MONDO:0009693"},{"relation_name":"is_a","term_name":"refractory hematologic cancer","termid":"MONDO:0004111"},{"relation_name":"is_a","term_name":"plasma cell neoplasm","termid":"MONDO:0004959"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"refractory plasma cell neoplasm","secondary_identifiers":["MEDGEN:75844","DOID:9544","UMLS:C0278620"],"synonyms":[{"name":"refractory plasma cell neoplasm","type":"exact"}],"termid":"MONDO:0004816","xrefs":{"Monarch":{"xref_id":"0004816"}}}


id: GO:0033501
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A homeostatic process involved in the maintenance of an internal steady state of galactose within an organism or cell.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete galactose homeostasis (obsolete GO:0033501)","termid":"GO:0033501"}


id: GO:1901599
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of (-)-pinoresinol.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lignan biosynthetic process","termid":"GO:0009807"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"},{"relation_name":"is_a","term_name":"(-)-pinoresinol metabolic process","termid":"GO:1901598"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0019748"],"is_obsolete":false,"name":"(-)-pinoresinol biosynthetic process","synonyms":[{"name":"(-)-pinoresinol anabolism","type":"exact"},{"name":"(-)-pinoresinol biosynthesis","type":"exact"},{"name":"(-)-pinoresinol formation","type":"exact"},{"name":"(-)-pinoresinol synthesis","type":"exact"}],"termid":"GO:1901599"}


id: GO:0033423
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes a CCA codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0060090","GO:0003674","GO:0003723","GO:0005488"],"is_obsolete":false,"name":"CCA codon-amino acid adaptor activity","synonyms":[{"name":"proline tRNA","type":"related"}],"termid":"GO:0033423"}


id: FYPO:0005187
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more transport RNAs measured in a cell is lower than normal (i.e. lower than observed in wild-type cells). Transport RNAs are transcribed from genes whose products are involved in one or more transport processes.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0006551","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased level of transport gene mRNA during vegetative growth","synonyms":[{"name":"decreased level of transport gene RNA during vegetative growth","type":"exact"},{"name":"decreased level of transport gene mRNA during mitotic cell cycle","type":"related"},{"name":"decreased level of transport gene transcripts during vegetative growth","type":"exact"},{"name":"decreased transport gene mRNA accumulation during vegetative growth","type":"related"},{"name":"reduced level of transport gene mRNA during vegetative growth","type":"exact"}],"termid":"FYPO:0005187"}


id: PBO:0086961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulator of septin dynamics; involved in the regulation of septin dynamics at bud neck after mitotic entry, likely by stabilizing septin structure; regulated at post-translational level by cell cycle dependent phosphorylation; likely phosphorylated by Cdc28p and dephosphorylated by Cdc14p before cytokinesis; high-copy suppressor of synthetic lethality of sis2 sit4 double mutant; VHS2 has a paralog, MLF3, that arose from the whole genome duplication","termid":"PBO:0086961"}


id: GO:0018972
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving toluene-4-sulfonate, the anion of 4-toluene sulfonic acid, a white crystalline solid which is highly hygroscopic and soluble in water.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic acid metabolic process","termid":"GO:0006082"},{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"toluene-containing compound metabolic process","termid":"GO:0072490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006790"],"is_obsolete":false,"name":"toluene-4-sulfonate metabolic process","secondary_identifiers":["MetaCyc:TOLSULFDEG-PWY","UM-BBD_pathwayID:tsa"],"synonyms":[{"name":"4-methylbenzenesulfonate metabolic process","type":"exact"},{"name":"4-methylbenzenesulfonate metabolism","type":"exact"},{"name":"4-toluenesulfonate metabolic process","type":"exact"},{"name":"4-toluenesulfonate metabolism","type":"exact"},{"name":"toluene-4-sulfonate metabolism","type":"exact"},{"name":"toluene-4-sulphonate metabolic process","type":"exact"},{"name":"toluene-4-sulphonate metabolism","type":"exact"}],"termid":"GO:0018972"}


id: GO:0007507
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.","definition_xrefs":["GOC:jid","UBERON:0000948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"},{"relation_name":"part_of","term_name":"circulatory system development","termid":"GO:0072359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"heart development","secondary_identifiers":["Wikipedia:Heart_development","GO:0007511"],"synonyms":[{"name":"cardiac development","type":"related"},{"name":"dorsal vessel development","type":"narrow"}],"termid":"GO:0007507"}


id: PBO:0064348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plexin B2","termid":"PBO:0064348"}


id: PBO:0084981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH diphosphatase (pyrophosphatase); hydrolyzes the pyrophosphate linkage in NADH and related nucleotides; localizes to peroxisomes; enzymatic component of one of several partly redundant surveillance pathways involved in decapping of non-canonical nicotinamide adenine dinucleotide (NAD) capped nuclear NAD-RNAs; also possesses deCoAping activity involved in the decapping of non-canonical dephospho-CoA capped RNA (dpCoA-RNA); nudix hydrolase family member","termid":"PBO:0084981"}


id: PBO:0002748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"19S proteasome regulatory subunit Rpn502","termid":"PBO:0002748"}


id: PBO:0077403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 138","termid":"PBO:0077403"}


id: PBO:0004894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial conserved protein (predicted)","termid":"PBO:0004894"}


id: PBO:0004275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sir antagonist ortholog (predicted)","termid":"PBO:0004275"}


id: PBO:0059498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"msh homeobox 1","termid":"PBO:0059498"}


id: SO:0000889
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is paternally imprinted.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"paternally_imprinted","termid":"SO:0000136"},{"relation_name":"is_a","term_name":"epigenetically_modified_gene","termid":"SO:0000898"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paternally_imprinted_gene","synonyms":[{"name":"paternally imprinted gene","type":"exact"}],"termid":"SO:0000889"}


id: PBO:0066280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein Y-linked family 2 member D, pseudogene","termid":"PBO:0066280"}


id: PBO:0047605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"four and a half LIM domains 1","termid":"PBO:0047605"}


id: PBO:0052630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 7","termid":"PBO:0052630"}


id: PBO:0047019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A22","termid":"PBO:0047019"}


id: MONDO:0007308
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant Charcot-Marie-Tooth disease type 2A1 (CMT2A1) is a form of axonal Charcot-Marie-Tooth disease, a peripheral sensorimotor neuropathy. CMT2A presents with a more prominent muscle weakness in lower than upper limbs and frequent postural tremor.","definition_xrefs":["Orphanet:99946"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 2","termid":"MONDO:0018993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease type 2A1","secondary_identifiers":["NCIT:C134952","NCIT:C150609","MESH:C566138","OMIM:118210","SCTID:717016001","UMLS:C1861678","MEDGEN:350076","icd11.foundation:2087067372","GARD:1248","DOID:0110154"],"synonyms":[{"name":"CMT 2A","type":"related"},{"name":"CMT2A","type":"exact"},{"name":"CMT2A1","type":"exact"},{"name":"Charcot Marie Tooth disease type 2A","type":"related"},{"name":"Charcot-Marie-Tooth disease neuronal type 2A1","type":"exact"},{"name":"Charcot-Marie-Tooth disease type 2 caused by mutation in KIF1B","type":"exact"},{"name":"Charcot-Marie-Tooth disease type 2A","type":"exact"},{"name":"Charcot-Marie-Tooth disease type 2A1","type":"exact"},{"name":"Charcot-Marie-Tooth disease, axonal, autosomal dominant, type 2A1","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, type 2A","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, type 2A1","type":"related"},{"name":"Charcot-Marie-Tooth disease, neuronal, type 2A","type":"related"},{"name":"Charcot-Marie-Tooth disease, neuronal, type 2A1","type":"related"},{"name":"Charcot-Marie-Tooth disease, type 2A1","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy type 2A1","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, type 2A1","type":"related"},{"name":"HMSN IIA","type":"related"},{"name":"HMSN IIA1","type":"exact"},{"name":"HMSN IIa1","type":"related"},{"name":"HMSN2A1","type":"exact"},{"name":"KIF1B Charcot-Marie-Tooth disease type 2","type":"exact"},{"name":"autosomal dominant Charcot-Marie-Tooth disease axonal type 2A1","type":"exact"},{"name":"autosomal dominant Charcot-Marie-Tooth disease type 2A1","type":"related"},{"name":"hereditary motor and sensory neuropathy 2 A","type":"related"},{"name":"hereditary motor and sensory neuropathy IIA1","type":"exact"},{"name":"hereditary motor and sensory neuropathy IIa1","type":"related"}],"termid":"MONDO:0007308","xrefs":{"Monarch":{"xref_id":"0007308"}}}


id: PBO:0071805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2","termid":"PBO:0071805"}


id: MONDO:0007229
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Brachymetatarsus 4","secondary_identifiers":["UMLS:C1862083","MEDGEN:396286","OMIM:113475"],"synonyms":[{"name":"BRACHYMETATARSUS IV","type":"related"},{"name":"Brachymetatarsus type 4","type":"exact"},{"name":"metatarsus IV, short","type":"related"},{"name":"toe, fourth, short","type":"related"}],"termid":"MONDO:0007229","xrefs":{"Monarch":{"xref_id":"0007229"}}}


id: PBO:0048951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GOT2 pseudogene 2","termid":"PBO:0048951"}


id: PBO:0057462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 581","termid":"PBO:0057462"}


id: PBO:0047971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FRAS1 related extracellular matrix 3","termid":"PBO:0047971"}


id: GO:0006242
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of dCTP, deoxycytidine triphosphate.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside triphosphate biosynthetic process","termid":"GO:0009212"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleotide biosynthetic process","termid":"GO:0009221"},{"relation_name":"is_a","term_name":"dCTP metabolic process","termid":"GO:0046065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"dCTP biosynthetic process","synonyms":[{"name":"dCTP anabolism","type":"exact"},{"name":"dCTP biosynthesis","type":"exact"},{"name":"dCTP formation","type":"exact"},{"name":"dCTP synthesis","type":"exact"}],"termid":"GO:0006242"}


id: MONDO:1011676
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"endocrine system disorder, non-human animal","termid":"MONDO:1011317"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary hypoadrenocorticism, non-human animal","secondary_identifiers":["OMIA:000520"],"termid":"MONDO:1011676","xrefs":{"Monarch":{"xref_id":"1011676"}}}


id: PBO:0063439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphodiesterase 6B","termid":"PBO:0063439"}


id: MONDO:0018895
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Plummer-Vinson or Paterson-Kelly syndrome presents as a classical triad of dysphagia, iron-deficiency anemia and esophageal webs.","definition_xrefs":["Orphanet:54028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"acquired deficiency anemia","termid":"MONDO:0016625"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570"],"is_obsolete":false,"name":"Plummer-Vinson syndrome","secondary_identifiers":["icd11.foundation:1568337509","UMLS:C0032249","MESH:D011004","ICD10CM:D50.1","MedDRA:10040664","MEDGEN:45967","NCIT:C85016","SCTID:80126007","GARD:8259","ICD9:280.8"],"synonyms":[{"name":"Kelly's syndrome","type":"related"},{"name":"Kelly-Paterson syndrome","type":"exact"},{"name":"Paterson's syndrome","type":"related"},{"name":"Paterson-Brown-Kelly syndrome","type":"related"},{"name":"Paterson-Kelly syndrome","type":"related"},{"name":"Paterson’s syndrome","type":"related"},{"name":"Plummer Vinson syndrome","type":"related"},{"name":"Sideropenic dysphagia","type":"exact"},{"name":"dysphagia sideropenica","type":"related"}],"termid":"MONDO:0018895","xrefs":{"Monarch":{"xref_id":"0018895"}}}


id: GO:1902985
data:
  {"annotated_genes":["SJAG_02607","SJAG_02074","SJAG_00247"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105144,112411,116883],"is_not":false,"summary":null,"term":"GO:1902985"}]},"cv_name":"biological_process","definition":"Any pre-replicative complex assembly involved in mitotic cell cycle DNA replication.","definition_xrefs":["GO_REF:0000060","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pre-replicative complex assembly involved in nuclear cell cycle DNA replication","termid":"GO:0006267"},{"relation_name":"is_a","term_name":"mitotic cell cycle process","termid":"GO:1903047"},{"relation_name":"part_of","term_name":"mitotic DNA replication","termid":"GO:1902969"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00247":null,"SJAG_02074":null,"SJAG_02607":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0044085","GO:0006259","GO:0008150","GO:0006260","GO:0007049","GO:0065003"],"is_obsolete":false,"name":"mitotic pre-replicative complex assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"nuclear pre-replicative complex assembly involved in mitotic cell cycle","type":"exact"},{"name":"pre-replicative complex assembly involved in mitotic cell cycle DNA replication","type":"exact"}],"termid":"GO:1902985","terms_by_termid":{"GO:1902985":null}}


id: GO:0044596
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: S-adenosyl-L-methionine + 3-demethylubiquinol-10 = S-adenosyl-L-homocysteine + ubiquinol-10.","definition_xrefs":["PMID:10777520"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-demethylubiquinol-10 3-O-methyltransferase activity (obsolete GO:0044596)","termid":"GO:0044596"}


id: PBO:0016111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNase MRP subunit Rpp21 (predicted)","termid":"PBO:0016111"}


id: PBO:0045800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endothelin receptor type A","termid":"PBO:0045800"}


id: PBO:0051184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-75 (pseudogene)","termid":"PBO:0051184"}


id: GO:0044208
data:
  {"annotated_genes":["SJAG_02850","SJAG_00044"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78728,80706],"is_not":false,"summary":null,"term":"GO:0044208"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of adenosine monophosphate (AMP) from inosine 5'-monophosphate (IMP).","definition_xrefs":["PMID:10888601","GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"AMP biosynthetic process","termid":"GO:0006167"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00044":null,"SJAG_02850":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"'de novo' AMP biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0044208","terms_by_termid":{"GO:0044208":null}}


id: _global:adjacent_to
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"A geometric operator, specified in Egenhofer 1989. Two features meet if they share a junction on the sequence. X adjacent_to Y iff X and Y share a boundary but do not overlap.","definition_xrefs":["PMID:20226267","SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"},{"relation_name":"is_a","term_name":"spatially_disjoint_from","termid":"_global:spatially_disjoint_from"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adjacent_to","secondary_identifiers":["RO:0002220"],"synonyms":[{"name":"adjacent to","type":"exact"}],"termid":"_global:adjacent_to"}


id: GO:0005575
data:
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