# terms

id: PR:Q9P7L4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A fumarylacetoacetate hydrolase domain-containing protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR11820:SF7","OMA:SCHPO03866"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized hydrolase C21C3.09c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21C3.09c","secondary_identifiers":["UniProtKB:Q9P7L4"],"synonyms":[{"name":"Spom972h-FAHD1","type":"exact"}],"termid":"PR:Q9P7L4"}


id: PBO:0085225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Para hydroxybenzoate polyprenyl transferase; catalyzes the second step in ubiquinone (coenzyme Q) biosynthesis; human COQ2, mutations in which are implicated in an increased risk of mutiple-system atrophy, can complement a yeast coq2 null mutant","termid":"PBO:0085225"}


id: PBO:0042357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD99 molecule pseudogene 1","termid":"PBO:0042357"}


id: MONDO:0008736
data:
  {"annotated_genes":["SJAG_00702"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88914],"is_not":false,"summary":null,"term":"MONDO:0008736"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"peroxisome biogenesis disorder","termid":"MONDO:0019234"},{"relation_name":"is_a","term_name":"peroxisome biogenesis disorder due to PEX5 defect","termid":"MONDO:0100262"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00702":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0019053"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0019053","MONDO:0006025","MONDO:0005066","MONDO:0005559","MONDO:0005244"],"is_obsolete":false,"name":"peroxisome biogenesis disorder 2B","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:763148","NCIT:C155751","GARD:15134","UMLS:C3550234","OMIM:202370","DOID:0080622"],"synonyms":[{"name":"PBD2B","type":"related"},{"name":"peroxisome biogenesis disorder 2B","type":"exact"},{"name":"peroxisome biogenesis disorder type 2B","type":"exact"}],"termid":"MONDO:0008736","terms_by_termid":{"MONDO:0008736":null},"xrefs":{"Monarch":{"xref_id":"0008736"}}}


id: PBO:0056171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MADD antisense RNA 1","termid":"PBO:0056171"}


id: PBO:0090543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongation factor EF-1 alpha (eEF1A) methyltransferase Efm4","termid":"PBO:0090543"}


id: MONDO:1011871
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"progressive neuronopathy, non-human animal","secondary_identifiers":["OMIA:001282"],"termid":"MONDO:1011871","xrefs":{"Monarch":{"xref_id":"1011871"}}}


id: GO:0044426
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cell wall part (obsolete GO:0044426)","termid":"GO:0044426"}


id: MONDO:0010065
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spinocerebellar ataxia type 2","termid":"MONDO:0008458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0002039","MONDO:0005559"],"is_obsolete":false,"name":"spinocerebellar degeneration with slow eye movements","secondary_identifiers":["OMIM:271322"],"synonyms":[{"name":"SDSEM","type":"related"},{"name":"spinocerebellar degeneration with slow eye movements","type":"exact"}],"termid":"MONDO:0010065","xrefs":{"Monarch":{"xref_id":"0010065"}}}


id: PBO:0071376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L30","termid":"PBO:0071376"}


id: FYPO:0000361
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the nucleolus is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"output_of","term_name":"abnormal nucleolus organization","termid":"FYPO:0000814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal nucleolar morphology","synonyms":[{"name":"abnormal nucleolar morphology during mitotic cell cycle","type":"related"},{"name":"abnormal nucleolar morphology during vegetative growth","type":"exact"},{"name":"nucleolar morphology: abnormal","type":"related"}],"termid":"FYPO:0000361"}


id: PR:O60121
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A stomatin-like protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04040","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C16G5.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16G5.07c","secondary_identifiers":["UniProtKB:O60121"],"synonyms":[{"name":"Spom972h-STOML2","type":"exact"}],"termid":"PR:O60121"}


id: PBO:0060193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucin 13, cell surface associated","termid":"PBO:0060193"}


id: PBO:0062449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 116 pseudogene","termid":"PBO:0062449"}


id: GO:0018586
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: butyltin + O2 + 2 H+ + 2 e- = H2O + beta-hydroxybutyltin.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete mono-butyltin dioxygenase activity (obsolete GO:0018586)","synonyms":[{"name":"MBT dioxygenase activity","type":"exact"}],"termid":"GO:0018586"}


id: GO:0004650
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans.","definition_xrefs":["EC:3.2.1.15"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016798","GO:0016787"],"is_obsolete":false,"name":"polygalacturonase activity","secondary_identifiers":["MetaCyc:RXN-2103"],"synonyms":[{"name":"endo-D-galacturonase activity","type":"exact"},{"name":"endo-polygalacturonase activity","type":"exact"},{"name":"endogalacturonase activity","type":"exact"},{"name":"endopolygalacturonase activity","type":"exact"},{"name":"pectin depolymerase activity","type":"narrow"},{"name":"pectin hydrolase activity","type":"related"},{"name":"pectin polygalacturonase activity","type":"related"},{"name":"pectinase activity","type":"narrow"},{"name":"pectolase activity","type":"related"},{"name":"poly(1,4-alpha-D-galacturonide) glycanohydrolase activity","type":"exact"},{"name":"poly-alpha-1,4-galacturonide glycanohydrolase activity","type":"exact"}],"termid":"GO:0004650"}


id: PBO:0083220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps verified gene PRO3; identified by gene-trapping, microarray expression analysis, and genome-wide homology searching","termid":"PBO:0083220"}


id: FYPO:0005878
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"Auxotrophy in which a cell is unable to synthesize tryptophan, and therefore requires tryptophan in the medium for vegetative cell growth.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxotrophy","termid":"FYPO:0000128"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype","termid":"FYPO:0004638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"growth auxotrophic for tryptophan","synonyms":[{"name":"growth auxotrophic for tryptophan during mitotic cell cycle","type":"related"},{"name":"growth auxotrophic for tryptophan during vegetative growth","type":"exact"},{"name":"tryptophan auxotrophy","type":"exact"}],"termid":"FYPO:0005878"}


id: PBO:0027186
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_actin_cytoskeleton_during_vegetative_growth","termid":"PBO:0027186"}


id: FYPO:0002657
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which the switch from the monopolar to bipolar mode of cell growth (new end take-off; NETO) occurs to the same extent as in wild-type cells.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal NETO","termid":"FYPO:0001396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal occurrence of NETO","synonyms":[{"name":"normal NETO frequency","type":"exact"},{"name":"normal NETO occurrence","type":"exact"},{"name":"normal frequency of NETO","type":"exact"},{"name":"normal occurrence of NETO during mitotic cell cycle","type":"related"},{"name":"normal occurrence of NETO during vegetative growth","type":"exact"},{"name":"normal occurrence of activation of bipolar cell growth","type":"related"},{"name":"normal occurrence of cell growth mode switching, monopolar to bipolar","type":"exact"},{"name":"normal occurrence of new end take-off","type":"exact"},{"name":"normal occurrence of switch from monopolar to bipolar cell growth","type":"exact"}],"termid":"FYPO:0002657"}


id: PBO:0003249
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.2.1.12","termid":"PBO:0003249"}


id: PATO:0000147
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000147 absolute temperature (obsolete PATO:0000147)","termid":"PATO:0000147"}


id: PBO:0005030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein Mde7","termid":"PBO:0005030"}


id: PBO:0082202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha-1,2-mannosyltransferase; catalyzes sequential addition of the two terminal alpha 1,2-mannose residues to the Man5GlcNAc2-PP-dolichol intermediate during asparagine-linked glycosylation in the ER","termid":"PBO:0082202"}


id: GO:1905393
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the plant organ. This process pertains to the initial formation of a structure from unspecified parts.","definition_xrefs":["GOC:tb","GOC:TermGenie","GO_REF:0000081"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"plant organ formation","termid":"GO:1905393"}


id: GO:0002693
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of cellular extravasation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte migration","termid":"GO:0002687"},{"relation_name":"is_a","term_name":"regulation of cellular extravasation","termid":"GO:0002691"},{"relation_name":"positively_regulates","term_name":"cellular extravasation","termid":"GO:0045123"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cellular extravasation","synonyms":[{"name":"activation of cellular extravasation","type":"narrow"},{"name":"stimulation of cellular extravasation","type":"narrow"},{"name":"up regulation of cellular extravasation","type":"exact"},{"name":"up-regulation of cellular extravasation","type":"exact"},{"name":"upregulation of cellular extravasation","type":"exact"}],"termid":"GO:0002693"}


id: MONDO:0006481
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from epithelial cells of the ureter.","direct_ancestors":[{"relation_name":"is_a","term_name":"carcinoma","termid":"MONDO:0004993"},{"relation_name":"is_a","term_name":"ureter cancer","termid":"MONDO:0008627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"ureter carcinoma","secondary_identifiers":["SCTID:448864006","UMLS:C0600079","EFO:1000609","DOID:4939","MEDGEN:109002","NCIT:C8993"],"synonyms":[{"name":"carcinoma of the ureter","type":"exact"},{"name":"carcinoma of ureter","type":"exact"},{"name":"ureter cancer","type":"broad"},{"name":"ureter carcinoma","type":"exact"},{"name":"ureteral carcinoma","type":"exact"}],"termid":"MONDO:0006481","xrefs":{"Monarch":{"xref_id":"0006481"}}}


id: PATO:0000612
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000612 relative orientation value (obsolete PATO:0000612)","termid":"PATO:0000612"}


id: MONDO:1011936
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arthritis deformans, non-human animal","secondary_identifiers":["OMIA:000065"],"termid":"MONDO:1011936","xrefs":{"Monarch":{"xref_id":"1011936"}}}


id: GO:0033919
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of terminal (1->3)-alpha-D-glucosidic links in 1,3-alpha-D-glucans.","definition_xrefs":["EC:3.2.1.84"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-glucosidase activity","termid":"GO:0090599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016798","GO:0003674"],"is_obsolete":false,"name":"glucan 1,3-alpha-glucosidase activity","secondary_identifiers":["Reactome:R-HSA-532667","Reactome:R-HSA-548890","Reactome:R-HSA-9694364","Reactome:R-HSA-9683663","MetaCyc:3.2.1.84-RXN"],"synonyms":[{"name":"1,3-alpha-D-glucan 3-glucohydrolase activity","type":"related"},{"name":"exo-1,3-alpha-glucanase activity","type":"related"}],"termid":"GO:0033919"}


id: MONDO:0013058
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cystic leukoencephalopathy without megalencephaly is characterized by non-progressive leukoencephalopathy, bilateral cysts in the anterior part of the temporal lobe, cerebral white matter anomalies and severe psychomotor impairment. Less than 50 patients have been described in the literature so far. Inheritance is most likely autosomal recessive.","definition_xrefs":["Orphanet:85136"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"cystic leukoencephalopathy without megalencephaly","secondary_identifiers":["icd11.foundation:1081165012","SCTID:720825005","DOID:0081007","OMIM:612951","UMLS:C2751843","GARD:13199","MEDGEN:416646","MESH:C567845"],"synonyms":[{"name":"CLWM","type":"exact"},{"name":"RNAse T2-deficient leukoencephalopathy","type":"related"},{"name":"leukoencephalopathy, cystic, without megalencephaly","type":"related"}],"termid":"MONDO:0013058","xrefs":{"Monarch":{"xref_id":"0013058"}}}


id: PBO:0074390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small integral membrane protein 1 (Vel blood group)","termid":"PBO:0074390"}


id: PBO:0078477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ile (anticodon AAT) 1-1","termid":"PBO:0078477"}


id: PBO:0078648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon CTT) 2-4","termid":"PBO:0078648"}


id: GO:0009025
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-tagatose 1,6-diphosphate = D-glyceraldehyde 3-phosphate + glycerone phosphate.","definition_xrefs":["EC:4.1.2.40","RHEA:22948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"tagatose-bisphosphate aldolase activity","secondary_identifiers":["KEGG_REACTION:R01069","MetaCyc:TAGAALDOL-RXN"],"synonyms":[{"name":"AgaY","type":"related"},{"name":"AgaZ","type":"related"},{"name":"D-tagatose-1,6-bisphosphate D-glyceraldehyde 3-phosphate-lyase (glycerone-phosphate-forming)","type":"related"},{"name":"D-tagatose-1,6-bisphosphate aldolase activity","type":"related"},{"name":"D-tagatose-1,6-bisphosphate triosephosphate lyase activity","type":"exact"},{"name":"KbaY","type":"related"},{"name":"tagatose 1,6-diphosphate aldolase activity","type":"related"},{"name":"tagatose-1,6-bisphosphate aldolase 1","type":"exact"}],"termid":"GO:0009025"}


id: PBO:0071966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 kinase A5","termid":"PBO:0071966"}


id: GO:1905704
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of inhibitory synapse assembly.","definition_xrefs":["GOC:TermGenie","PMID:27779093","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of synapse assembly","termid":"GO:0051965"},{"relation_name":"is_a","term_name":"regulation of inhibitory synapse assembly","termid":"GO:1905702"},{"relation_name":"positively_regulates","term_name":"inhibitory synapse assembly","termid":"GO:1904862"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of inhibitory synapse assembly","synonyms":[{"name":"activation of inhibitory synapse assembly","type":"narrow"},{"name":"activation of inhibitory synapse formation","type":"narrow"},{"name":"positive regulation of inhibitory synapse formation","type":"exact"},{"name":"up regulation of inhibitory synapse assembly","type":"exact"},{"name":"up regulation of inhibitory synapse formation","type":"exact"},{"name":"up-regulation of inhibitory synapse assembly","type":"exact"},{"name":"up-regulation of inhibitory synapse formation","type":"exact"},{"name":"upregulation of inhibitory synapse assembly","type":"exact"},{"name":"upregulation of inhibitory synapse formation","type":"exact"}],"termid":"GO:1905704"}


id: PBO:0038424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-2-macroglobulin like 1","termid":"PBO:0038424"}


id: PBO:0067818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 120","termid":"PBO:0067818"}


id: MONDO:0010287
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hereditary spastic paraplegia that has material basis in variation in the chromosome region Xq11.2.","definition_xrefs":["DOID:0110769","PMID:9254866"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary spastic paraplegia","termid":"MONDO:0019064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"hereditary spastic paraplegia 16","secondary_identifiers":["UMLS:C1846046","GARD:9585","MEDGEN:375796","MESH:C536643","OMIM:300266","Orphanet:100997"],"synonyms":[{"name":"SPG16","type":"exact"},{"name":"X-linked spastic paraplegia 16","type":"exact"},{"name":"X-linked spastic paraplegia type 16","type":"exact"},{"name":"hereditary spastic paraplegia type 16","type":"exact"},{"name":"spastic paraplegia 16","type":"related"},{"name":"spastic paraplegia 16, X-linked","type":"related"},{"name":"spastic paraplegia 16, X-linked, complicated, X-linked recessive","type":"exact"}],"termid":"MONDO:0010287","xrefs":{"Monarch":{"xref_id":"0010287"}}}


id: GO:1902247
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of geranylgeranyl diphosphate.","definition_xrefs":["GOC:TermGenie","PMID:22672125"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid catabolic process","termid":"GO:0009395"},{"relation_name":"is_a","term_name":"terpenoid catabolic process","termid":"GO:0016115"},{"relation_name":"is_a","term_name":"geranylgeranyl diphosphate metabolic process","termid":"GO:0033385"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"geranylgeranyl diphosphate catabolic process","synonyms":[{"name":"geranylgeranyl diphosphate breakdown","type":"exact"},{"name":"geranylgeranyl diphosphate catabolism","type":"exact"},{"name":"geranylgeranyl diphosphate degradation","type":"exact"}],"termid":"GO:1902247"}


id: PBO:0018196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AMP-activated protein serine/threonine kinase alpha subunit Ssp2","termid":"PBO:0018196"}


id: FYPO:0005678
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of ubiquitinated protein measured in a cell is too low to detect. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein absent from cell during vegetative growth","termid":"FYPO:0001984"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"ubiquitinated protein absent from cell during vegetative growth","synonyms":[{"name":"ubiquitinated protein absent from cell during mitotic cell cycle","type":"related"},{"name":"ubiquitylated protein absent from cell during vegetative growth","type":"exact"},{"name":"undetectable cellular ubiquitinated protein level during vegetative growth","type":"exact"}],"termid":"FYPO:0005678"}


id: FYPO:0004756
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype in which regulation of the initiation of DNA-dependent DNA replication is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype","termid":"FYPO:0000145"},{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal regulation of DNA replication initiation","synonyms":[{"name":"abnormal regulation of DNA replication initiation during mitotic cell cycle","type":"related"},{"name":"abnormal regulation of DNA-dependent DNA replication initiation","type":"exact"}],"termid":"FYPO:0004756"}


id: PBO:0078921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon TTG) 10-1","termid":"PBO:0078921"}


id: PATO:0002280
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's possessing a broad surface in articulation with another entity.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"articulated with","termid":"PATO:0002278"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"broadly articulated with","termid":"PATO:0002280"}


id: PBO:0049400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanylate cyclase activator 1A","termid":"PBO:0049400"}


id: GO:0160238
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: reduced [NADPH-hemoprotein reductase] + O2 + a long-chain fatty aldehyde = oxidized [NADPH-hemoprotein reductase] + CO2 + H2O + H+ + a long-chain alkane.","definition_xrefs":["PMID:22927409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-carbon lyase activity","termid":"GO:0016830"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"long-chain fatty aldehyde oxidative decarbonylase activity","synonyms":[{"name":"aldehyde oxidative decarbonylase activity","type":"broad"}],"termid":"GO:0160238"}


id: MOD:02076
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an L-arginine residue coordinated to one or more metal atoms or metal clusters.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-arginine residue","termid":"MOD:00902"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metal or metal cluster coordinated L-arginine residue","termid":"MOD:02076"}


id: GO:0072662
data:
  {"annotated_genes":["SJAG_00891","SJAG_02619","SJAG_05315","SJAG_04857","SJAG_03440","SJAG_03324","SJAG_00326","SJAG_02693","SJAG_02997","SJAG_00702","SJAG_05950","SJAG_04763","SJAG_02797","SJAG_04428","SJAG_03781","SJAG_01165","SJAG_02034"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72395,71882,81410,104080,75060,98288,113244,73790],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016558"},{"annotations":[63446,75452,72420],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0016560"},{"annotations":[65297,117159,119172,100384],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0016562"},{"annotations":[113245,92238,97244],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045046"}]},"cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained at, a location in a peroxisome.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxisome organization","termid":"GO:0007031"},{"relation_name":"is_a","term_name":"protein localization to organelle","termid":"GO:0033365"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00326":null,"SJAG_00702":null,"SJAG_00891":null,"SJAG_01165":null,"SJAG_02034":null,"SJAG_02619":null,"SJAG_02693":null,"SJAG_02797":null,"SJAG_02997":null,"SJAG_03324":null,"SJAG_03440":null,"SJAG_03781":null,"SJAG_04428":null,"SJAG_04763":null,"SJAG_04857":null,"SJAG_05315":null,"SJAG_05950":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0007031"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0007031"],"is_obsolete":false,"name":"protein localization to peroxisome","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"protein localisation to peroxisome","type":"exact"}],"termid":"GO:0072662","terms_by_termid":{"GO:0016558":null,"GO:0016560":null,"GO:0016562":null,"GO:0045046":null}}


id: MONDO:0013223
data:
  {"annotated_genes":["SJAG_00373"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88086],"is_not":false,"summary":null,"term":"MONDO:0013223"}]},"cv_name":"mondo","definition":"Any spondylodysplastic dysplasia in which the cause of the disease is a mutation in the PAM16 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spondylometaphyseal dysplasia","termid":"MONDO:0016763"},{"relation_name":"is_a","term_name":"severe spondylodysplastic dysplasia","termid":"MONDO:0800080"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00373":null},"genotype_count":0,"is_obsolete":false,"name":"autosomal recessive spondylometaphyseal dysplasia, Megarbane type","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0112304","UMLS:C2750075","OMIM:613320","MEDGEN:413221","GARD:17667","MESH:C567644","Orphanet:401979"],"synonyms":[{"name":"PAM16 spondylodysplastic dysplasia","type":"exact"},{"name":"SMDMDM","type":"related"},{"name":"autosomal recessive spondylometaphyseal dysplasia, Mégarbané type","type":"related"},{"name":"chondrodysplasia, Megarbane-Dagher-Melki type","type":"related"},{"name":"spondylodysplastic dysplasia caused by mutation in PAM16","type":"exact"},{"name":"spondylometaphyseal dysplasia, MEGARBANE-DAGHER-MELKI type","type":"related"},{"name":"spondylometaphyseal dysplasia, Megarbane-Dagher-Melike type","type":"exact"}],"termid":"MONDO:0013223","terms_by_termid":{"MONDO:0013223":null},"xrefs":{"Monarch":{"xref_id":"0013223"}}}


id: GO:0046414
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of organomercury compounds, any organic compound containing a mercury atom.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete organomercury biosynthetic process (obsolete GO:0046414)","synonyms":[{"name":"organomercury anabolism","type":"exact"},{"name":"organomercury biosynthesis","type":"exact"},{"name":"organomercury formation","type":"exact"},{"name":"organomercury synthesis","type":"exact"}],"termid":"GO:0046414"}


id: MONDO:0700201
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tick-borne infectious disease that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vector-borne disease, non-human animal","termid":"MONDO:0700114"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tick-borne infectious disease, non-human animal","termid":"MONDO:0700201","xrefs":{"Monarch":{"xref_id":"0700201"}}}


id: SO:0002281
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Terminal inverted repeat transposon superfamily Merlin elements create 8-9 bp target-site duplications (TSD).","definition_xrefs":["PMID:17984973"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terminal_inverted_repeat_element","termid":"SO:0000208"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merlin_TIR_transposon","synonyms":[{"name":"DTE transposon","type":"exact"},{"name":"Merlin TIR transposon","type":"exact"},{"name":"Merlin transposon","type":"exact"}],"termid":"SO:0002281"}


id: GO:0141049
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glutathionylated protein (PSSG) + glutathione (GSH) = protein-thiol (PSH) + glutathione disulfide (GSSG). The reaction may proceed via a 'monothiol' or 'dithiol' mechanism.","definition_xrefs":["PMID:36771108","PMID:33932870","PMID:23397885"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disulfide oxidoreductase activity","termid":"GO:0015036"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor","termid":"GO:0016671"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0015036"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0015036","GO:0140096","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"protein-glutathione oxidoreductase (glutathione) activity","synonyms":[{"name":"glutaredoxin activity","type":"broad"},{"name":"glutathione oxidoreductase activity","type":"broad"}],"termid":"GO:0141049"}


id: MONDO:0009634
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtia with meatal atresia and conductive deafness","secondary_identifiers":["MEDGEN:419093","MESH:C537469","OMIM:251800","UMLS:C2931502"],"synonyms":[{"name":"Gupta Patton syndrome","type":"related"},{"name":"familial microtia and meatal atresia","type":"related"},{"name":"familial microtia with meatal atresia and conductive deafness","type":"related"},{"name":"microtia meatal atresia deafness dominant","type":"related"},{"name":"microtia with meatal atresia and conductive deafness","type":"exact"},{"name":"microtia, meatal atresia and conductive deafness","type":"related"}],"termid":"MONDO:0009634","xrefs":{"Monarch":{"xref_id":"0009634"}}}


id: PR:Q9UT41
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- bst1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UT41"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI inositol-deacylase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC824.02","synonyms":[{"name":"Spom972h-bst1","type":"exact"}],"termid":"PR:Q9UT41"}


id: MONDO:0957316
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete epidermolytic hyperkeratosis (obsolete MONDO:0957316)","termid":"MONDO:0957316","xrefs":{"Monarch":{"xref_id":"0957316"}}}


id: PBO:0109462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L50","termid":"PBO:0109462"}


id: PBO:0066674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBPJ interacting and tubulin associated 1","termid":"PBO:0066674"}


id: PBO:0120342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA methyltransferase 13","termid":"PBO:0120342"}


id: GO:0044666
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that can methylate lysine-4 of histone H3, and which contains either of the protein subunits MLL3 or MLL4 in mammals, or equivalent in other species.","definition_xrefs":["PMID:21875999","GOC:sart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone methyltransferase complex","termid":"GO:0035097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005654","GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"MLL3/4 complex","synonyms":[{"name":"Trr/COMPASS-like complex","type":"exact"}],"termid":"GO:0044666"}


id: PBO:0076361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SZRD1 pseudogene 1","termid":"PBO:0076361"}


id: PBO:0040844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bleomycin hydrolase","termid":"PBO:0040844"}


id: PBO:0001153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium ion/proton antiporter Kha1 (predicted)","termid":"PBO:0001153"}


id: GO:0005770
data:
  {"annotated_genes":["SJAG_04047","SJAG_03347","SJAG_01981","SJAG_02100","SJAG_03137","SJAG_01088","SJAG_00204","SJAG_03892","SJAG_04616","SJAG_01242","SJAG_04349","SJAG_03976","SJAG_04643","SJAG_04024","SJAG_03131","SJAG_01324","SJAG_05210","SJAG_04023","SJAG_01309","SJAG_04552","SJAG_03783","SJAG_01379","SJAG_04513","SJAG_02516","SJAG_01367","SJAG_00416","SJAG_02432","SJAG_01039","SJAG_03848","SJAG_01488","SJAG_04489","SJAG_00181","SJAG_02049","SJAG_03072","SJAG_00287","SJAG_00900","SJAG_05207","SJAG_02429","SJAG_04359","SJAG_00173","SJAG_07012","SJAG_00380"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72436,72757,72972,73289,73511,76409,76597,78928,79029,81756,81793,100678,101527,105879,106909,110520,111481,113109,119411],"is_not":false,"summary":null,"term":"GO:0005770"},{"annotations":[99446],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031906"},{"annotations":[80215,99473,93817,102897,101323,89934,77849],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031902"},{"annotations":[92812],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0035658"},{"annotations":[116305,77968,115162,77543,71873,72769,77726,121291,80988,72443,107581],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005771"},{"annotations":[63115,121293,60925],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032585"}]},"cv_name":"cellular_component","definition":"A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.","definition_xrefs":["NIF_Subcellular:nlx_subcell_20090702","PMID:11964142","PMID:2557062"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endosome","termid":"GO:0005768"}],"gene_count":42,"genes_by_uniquename":{"SJAG_00173":null,"SJAG_00181":null,"SJAG_00204":null,"SJAG_00287":null,"SJAG_00380":null,"SJAG_00416":null,"SJAG_00900":null,"SJAG_01039":null,"SJAG_01088":null,"SJAG_01242":null,"SJAG_01309":null,"SJAG_01324":null,"SJAG_01367":null,"SJAG_01379":null,"SJAG_01488":null,"SJAG_01981":null,"SJAG_02049":null,"SJAG_02100":null,"SJAG_02429":null,"SJAG_02432":null,"SJAG_02516":null,"SJAG_03072":null,"SJAG_03131":null,"SJAG_03137":null,"SJAG_03347":null,"SJAG_03783":null,"SJAG_03848":null,"SJAG_03892":null,"SJAG_03976":null,"SJAG_04023":null,"SJAG_04024":null,"SJAG_04047":null,"SJAG_04349":null,"SJAG_04359":null,"SJAG_04489":null,"SJAG_04513":null,"SJAG_04552":null,"SJAG_04616":null,"SJAG_04643":null,"SJAG_05207":null,"SJAG_05210":null,"SJAG_07012":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005768"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0031410","GO:0005575","GO:0005768","GO:0005737"],"is_obsolete":false,"name":"late endosome","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000044":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"PMID:32109380":null},"synonyms":[{"name":"PVC","type":"broad"},{"name":"prevacuolar compartment","type":"exact"}],"termid":"GO:0005770","terms_by_termid":{"GO:0005770":null,"GO:0005771":null,"GO:0031902":null,"GO:0031906":null,"GO:0032585":null,"GO:0035658":null}}


id: FYPO:0001976
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, and morphology of cytoplasmic microtubules is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"},{"relation_name":"is_a","term_name":"normal cytoplasmic microtubules","termid":"FYPO:0007809"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal cytoplasmic microtubules during vegetative growth","synonyms":[{"name":"normal cytoplasmic microtubule morphology during vegetative growth","type":"exact"},{"name":"normal cytoplasmic microtubule structure during vegetative growth","type":"narrow"},{"name":"normal cytoplasmic microtubules during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001976"}


id: PBO:0004119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"M-factor transporter Mam1","termid":"PBO:0004119"}


id: GO:0042414
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving epinephrine, a hormone produced by the medulla of the adrenal glands that increases heart activity, improves the power and prolongs the action of muscles, and increases the rate and depth of breathing. It is synthesized by the methylation of norepinephrine.","definition_xrefs":["ISBN:0192801023","ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catecholamine metabolic process","termid":"GO:0006584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epinephrine metabolic process","synonyms":[{"name":"adrenaline metabolic process","type":"exact"},{"name":"adrenaline metabolism","type":"exact"},{"name":"epinephrine metabolism","type":"exact"}],"termid":"GO:0042414"}


id: PBO:0076193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO2 pseudogene 2","termid":"PBO:0076193"}


id: MONDO:1040027
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An array of connective tissue disorders characterized by joint instability and chronic pain. Fatigue and other systemic symptoms that affect daily function may occur as well. These diseases are scored using the Beighton scoring system and one of more secondary musculoskeletal manifestations including post-traumatic symptoms, pain, altered proprioception, and a variety of other characteristics like pes planus, kyphosis, scoliosis, or joint misalignment.","definition_xrefs":["PMID:34312277"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disorder of connective tissue","termid":"MONDO:0023603"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypermobility spectrum disorder","synonyms":[{"name":"BJHS","type":"exact"},{"name":"benign joint hypermobility syndrome","type":"exact"},{"name":"joint hypermobility syndrome","type":"related"}],"termid":"MONDO:1040027","xrefs":{"Monarch":{"xref_id":"1040027"}}}


id: PBO:0070273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, variant U1 small nuclear 8","termid":"PBO:0070273"}


id: PBO:0077623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymosin beta 15B","termid":"PBO:0077623"}


id: GO:0004970
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate receptor activity","termid":"GO:0008066"},{"relation_name":"is_a","term_name":"amino acid transmembrane transporter activity","termid":"GO:0015171"},{"relation_name":"is_a","term_name":"transmitter-gated monoatomic ion channel activity","termid":"GO:0022824"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transporter activity","termid":"GO:0046943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"glutamate-gated receptor activity","synonyms":[{"name":"ionotropic glutamate receptor activity","type":"exact"}],"termid":"GO:0004970"}


id: PBO:0041201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BUD31 homolog pseudogene 1","termid":"PBO:0041201"}


id: GO:0048067
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Establishment of a pattern of pigment in the cuticle of an organism.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental pigmentation","termid":"GO:0048066"},{"relation_name":"part_of","term_name":"cuticle development","termid":"GO:0042335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cuticle pigmentation","termid":"GO:0048067"}


id: MONDO:0008442
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spastic paraplegia-neuropathy-poikiloderma syndrome is a complex form of hereditary spastic paraplegia characterized by spastic paraplegia, demyelinating peripheral sensorimotor neuropathy, poikiloderma (manifesting with loss of eyebrows and eyelashes in childhood in addition to delicate, smooth, and wasted skin) and distal amyotrophy (presenting after puberty). There have been no further descriptions in the literature since 1992.","definition_xrefs":["Orphanet:2821"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant complex spastic paraplegia","termid":"MONDO:0015087"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005559"],"is_obsolete":false,"name":"spastic paraplegia-neuropathy-poikiloderma syndrome","secondary_identifiers":["GARD:4921","MEDGEN:355814","MESH:C536870","OMIM:182815","UMLS:C1866851"],"synonyms":[{"name":"Antinolo-Nieto-Borrego syndrome","type":"exact"},{"name":"familial spastic paraplegia with neuropathy and poikiloderma","type":"related"},{"name":"spastic paraplegia neuropathy poikiloderma","type":"related"},{"name":"spastic paraplegia with neuropathy and poikiloderma","type":"related"}],"termid":"MONDO:0008442","xrefs":{"Monarch":{"xref_id":"0008442"}}}


id: PR:G2TRK2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC29A4.22 gene.","definition_xrefs":["UniProtKB:G2TRK2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C29A4.22 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29A4.22","synonyms":[{"name":"Spom972h-SPAC29A4.22","type":"exact"}],"termid":"PR:G2TRK2"}


id: MONDO:0019099
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Any of the forms of soft tissue neoplasm that have a rare incidence.","definition_xrefs":["MONDO:patterns/rare"],"gene_count":0,"genotype_count":0,"name":"obsolete rare soft tissue tumor (obsolete MONDO:0019099)","secondary_identifiers":["Orphanet:71209"],"synonyms":[{"name":"rare mesenchymal tumor","type":"exact"},{"name":"rare soft tissue neoplasm","type":"exact"}],"termid":"MONDO:0019099","xrefs":{"Monarch":{"xref_id":"0019099"}}}


id: GO:0015836
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of lipid-linked peptidoglycans into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidoglycan transport","termid":"GO:0015835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"lipid-linked peptidoglycan transport","synonyms":[{"name":"lipid-linked murein transport","type":"exact"}],"termid":"GO:0015836"}


id: PBO:0060911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nexilin F-actin binding protein","termid":"PBO:0060911"}


id: PBO:0080300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 64 pseudogene","termid":"PBO:0080300"}


id: GO:0050934
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of a late stripe melanocyte (LSM). In zebrafish, LSMs develop during the second phase (3-4 weeks of development) of the larva-to-adult transition (2-4 weeks of development).","definition_xrefs":["PMID:11858836"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melanocyte differentiation","termid":"GO:0030318"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"late stripe melanocyte differentiation","synonyms":[{"name":"late stripe melanocyte cell differentiation","type":"exact"},{"name":"late stripe melanophore differentiation","type":"exact"}],"termid":"GO:0050934"}


id: GO:1904707
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vascular smooth muscle cell proliferation.","definition_xrefs":["GOC:TermGenie","PMID:23246467","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of smooth muscle cell proliferation","termid":"GO:0048661"},{"relation_name":"is_a","term_name":"regulation of vascular associated smooth muscle cell proliferation","termid":"GO:1904705"},{"relation_name":"positively_regulates","term_name":"vascular associated smooth muscle cell proliferation","termid":"GO:1990874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vascular associated smooth muscle cell proliferation","synonyms":[{"name":"activation of VSMC proliferation","type":"narrow"},{"name":"activation of vascular smooth muscle cell proliferation","type":"narrow"},{"name":"positive regulation of VSMC proliferation","type":"exact"},{"name":"positive regulation of vascular smooth muscle cell proliferation","type":"exact"},{"name":"up regulation of VSMC proliferation","type":"exact"},{"name":"up regulation of vascular smooth muscle cell proliferation","type":"exact"},{"name":"up-regulation of VSMC proliferation","type":"exact"},{"name":"up-regulation of vascular smooth muscle cell proliferation","type":"exact"},{"name":"upregulation of VSMC proliferation","type":"exact"},{"name":"upregulation of vascular smooth muscle cell proliferation","type":"exact"}],"termid":"GO:1904707"}


id: PR:O94255
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nce103 gene.","definition_xrefs":["UniProtKB:O94255","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbonic anhydrase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP8B7.05c","synonyms":[{"name":"Spom972h-nce103","type":"exact"},{"name":"carbonate dehydratase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94255"}


id: PBO:0082817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Conserved mitochondrial protein of unknown function; processed by both mitochondrial processing peptidase and mitochondrial octapeptidyl aminopeptidase; gene contains the nested antisense gene NAG1","termid":"PBO:0082817"}


id: PBO:0089435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyoxylase III Sdj1-like","termid":"PBO:0089435"}


id: GO:1902306
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of sodium ion transmembrane transport.","definition_xrefs":["GOC:BHF","GOC:rl","GOC:TermGenie","PMID:18591664","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of sodium ion transport","termid":"GO:0010766"},{"relation_name":"is_a","term_name":"regulation of sodium ion transmembrane transport","termid":"GO:1902305"},{"relation_name":"is_a","term_name":"negative regulation of cation transmembrane transport","termid":"GO:1904063"},{"relation_name":"negatively_regulates","term_name":"sodium ion transmembrane transport","termid":"GO:0035725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"negative regulation of sodium ion transmembrane transport","synonyms":[{"name":"down regulation of sodium ion membrane transport","type":"exact"},{"name":"down regulation of sodium ion transmembrane transport","type":"exact"},{"name":"down-regulation of sodium ion membrane transport","type":"exact"},{"name":"down-regulation of sodium ion transmembrane transport","type":"exact"},{"name":"downregulation of sodium ion membrane transport","type":"exact"},{"name":"downregulation of sodium ion transmembrane transport","type":"exact"},{"name":"inhibition of sodium ion membrane transport","type":"narrow"},{"name":"inhibition of sodium ion transmembrane transport","type":"narrow"},{"name":"negative regulation of sodium ion membrane transport","type":"exact"}],"termid":"GO:1902306"}


id: MONDO:0009727
data:
  {"annotated_genes":["SJAG_01941","SJAG_02463"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88533,88534],"is_not":false,"summary":null,"term":"MONDO:0009727"}]},"cv_name":"mondo","definition":"A lethal perinatal bone dysplasia characterized by limb shortening, normal sized skull with cleft palate, hitchhiker thumbs, distinctive facial dysmorphism and radiographic skeletal features, caused by mutations in the diastrophic dysplasia sulfate transporter gene.","definition_xrefs":["Orphanet:56304"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"mineral metabolism disease","termid":"MONDO:0000226"},{"relation_name":"is_a","term_name":"atelosteogenesis","termid":"MONDO:0000389"},{"relation_name":"is_a","term_name":"inborn errors of metabolism","termid":"MONDO:0019052"},{"relation_name":"is_a","term_name":"SLC26A2-related skeletal dysplasia","termid":"MONDO:0100592"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01941":null,"SJAG_02463":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497","MONDO:0005066"],"is_obsolete":false,"name":"atelosteogenesis type II","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:8329","MESH:C535395","ICD9:756.9","SCTID:254055004","UMLS:C1850554","ICD10CM:Q77.5","MEDGEN:338072","OMIM:256050"],"synonyms":[{"name":"AO2","type":"exact"},{"name":"AOII","type":"exact"},{"name":"De 50A Chapelle dysplasia","type":"related"},{"name":"De la Chapelle dysplasia","type":"related"},{"name":"atelosteogenesis II","type":"related"},{"name":"atelosteogenesis type 2","type":"exact"},{"name":"atelosteogenesis type II","type":"exact"},{"name":"atelosteogenesis, type 2","type":"related"},{"name":"atelosteogenesis, type II","type":"related"},{"name":"neonatal osseous dysplasia 1","type":"related"},{"name":"neonatal osseous dysplasia type 1","type":"exact"}],"termid":"MONDO:0009727","terms_by_termid":{"MONDO:0009727":null},"xrefs":{"Monarch":{"xref_id":"0009727"}}}


id: GO:0160251
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues, occurring through dextrin derivative intermediates.","definition_xrefs":["MetaCyc:PWY-5941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycogen catabolic process","termid":"GO:0005980"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006091","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"glycogen catabolic process via dextrin","termid":"GO:0160251"}


id: PBO:0076175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfotransferase family 1D member 1, pseudogene","termid":"PBO:0076175"}


id: PBO:0068855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 94, pseudogene","termid":"PBO:0068855"}


id: PBO:0056928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial intermediate peptidase","termid":"PBO:0056928"}


id: GO:0061309
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process aimed at the progression of a cardiac neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell that contributes to the shaping of the outflow tract.","definition_xrefs":["GOC:dph","GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac neural crest cell development involved in heart development","termid":"GO:0061308"},{"relation_name":"part_of","term_name":"outflow tract morphogenesis","termid":"GO:0003151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac neural crest cell development involved in outflow tract morphogenesis","termid":"GO:0061309"}


id: GO:0072677
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of an eosinophil within or between different tissues and organs of the body.","definition_xrefs":["GOC:BHF","GOC:mah","CL:0000771"],"direct_ancestors":[{"relation_name":"is_a","term_name":"granulocyte migration","termid":"GO:0097530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"eosinophil migration","termid":"GO:0072677"}


id: PBO:0064083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PISRT1 lncRNA","termid":"PBO:0064083"}


id: MONDO:0018224
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, EBV-positive cutaneous T-cell lymphoproliferative disorder, composed of CD8 positive cytotoxic T-lymphocytes. It affects children, almost exclusively in Latin America and Asia. Patients present with papulovesicular skin lesions, clinically resembling hydroa vacciniforme, in areas of sun-exposed skin.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mature T-cell and NK-cell non-Hodgkin lymphoma","termid":"MONDO:0000430"},{"relation_name":"is_a","term_name":"EBV-positive T-cell lymphoproliferative disorder of childhood","termid":"MONDO:0006188"},{"relation_name":"is_a","term_name":"Epstein-Barr virus-associated malignant lymphoproliferative disorder","termid":"MONDO:0017343"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"hydroa vacciniforme-like lymphoma","secondary_identifiers":["SCTID:763719001","MEDGEN:317758","GARD:21563","Orphanet:364039","NCIT:C45327","UMLS:C1708397","ICDO:9725/3"],"synonyms":[{"name":"HVLL","type":"exact"},{"name":"angiocentric cutaneous T-cell lymphoma of childhood","type":"exact"},{"name":"hV-like lymphoma","type":"exact"},{"name":"hydroa vacciniforme-like cutaneous T-cell lymphoma","type":"exact"},{"name":"hydroa vacciniforme-like lymphoma","type":"exact"},{"name":"hydroa vacciniforme-like lymphoproliferative disorder","type":"exact"},{"name":"hydroa-like cutaneous T-cell lymphoma","type":"exact"}],"termid":"MONDO:0018224","xrefs":{"Monarch":{"xref_id":"0018224"}}}


id: PBO:0086490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative oxidoreductase, subunit of Coenzyme Q biosynthetic complexes; required for synthesis of wild-type levels of Coenzyme Q (ubiquinone); member of the short-chain dehydrogenase/reductase (SDR) superfamily; orthologous gene in some other fungi is fused to the COQ10 ortholog","termid":"PBO:0086490"}


id: PBO:0041072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BMP/retinoic acid inducible neural specific 1","termid":"PBO:0041072"}


id: GO:0009033
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: NADH + H+ + trimethylamine-N-oxide = NAD+ + trimethylamine + H2O.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete trimethylamine-N-oxide reductase activity (obsolete GO:0009033)","synonyms":[{"name":"NADH:trimethylamine-N-oxide oxidoreductase","type":"exact"},{"name":"trimethylamine N-oxide reductase","type":"exact"},{"name":"trimethylamine oxidase activity","type":"exact"},{"name":"trimethylamine oxide reductase","type":"exact"}],"termid":"GO:0009033"}


id: PBO:0091888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidase family M20 protein involved in glutathione catabolism","termid":"PBO:0091888"}


id: PBO:0074434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small integral membrane protein 34","termid":"PBO:0074434"}


id: GO:1902359
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any Notch signaling pathway that is involved in somitogenesis.","definition_xrefs":["GOC:dph","GOC:TermGenie","PMID:21795391"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Notch signaling pathway","termid":"GO:0007219"},{"relation_name":"part_of","term_name":"somitogenesis","termid":"GO:0001756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"Notch signaling pathway involved in somitogenesis","synonyms":[{"name":"N signaling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"N signaling pathway involved in somitogenesis","type":"exact"},{"name":"N signalling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"N signalling pathway involved in somitogenesis","type":"exact"},{"name":"Notch receptor signaling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"Notch receptor signaling pathway involved in somitogenesis","type":"exact"},{"name":"Notch receptor signalling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"Notch receptor signalling pathway involved in somitogenesis","type":"exact"},{"name":"Notch signaling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"Notch signalling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"Notch signalling pathway involved in somitogenesis","type":"exact"},{"name":"Notch-receptor signaling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"Notch-receptor signaling pathway involved in somitogenesis","type":"exact"},{"name":"Notch-receptor signalling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"Notch-receptor signalling pathway involved in somitogenesis","type":"exact"}],"termid":"GO:1902359"}


id: PBO:0048292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactose-1-phosphate uridylyltransferase","termid":"PBO:0048292"}


id: MONDO:0009735
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Netherton syndrome (NS) is a skin disorder characterized by congenital ichthyosiform erythroderma (CIE), a distinctive hair shaft defect (trichorrhexis invaginata; TI) and atopic manifestations.","definition_xrefs":["Orphanet:634"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete eyebrow/eyelashes structural anomaly (obsolete MONDO:0020189)","termid":"MONDO:0020189"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"inherited ichthyosis","termid":"MONDO:0015947"},{"relation_name":"is_a","term_name":"hyper-IgE syndrome","termid":"MONDO:0018037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005328","MONDO:0005046","MONDO:0006025","MONDO:0005093"],"is_obsolete":false,"name":"Netherton syndrome","secondary_identifiers":["NCIT:C84922","icd11.foundation:1797493665","SCTID:312514006","SCTID:54336006","NANDO:2200993","NORD:1290","MedDRA:10062909","NANDO:1200619","UMLS:C5574950","DOID:0050474","MESH:D056770","NANDO:1200338","GARD:7182","OMIM:256500","MEDGEN:1802991"],"synonyms":[{"name":"Comel-Netherton syndrome","type":"related"},{"name":"Comèl-Netherton syndrome","type":"exact"},{"name":"Ichthyosis, Netherton Syndrome","type":"exact"},{"name":"NS","type":"exact"},{"name":"Netherton disease","type":"related"},{"name":"Netherton syndrome","type":"exact"},{"name":"bamboo hair syndrome","type":"exact"},{"name":"erythroderma, ichthyosiform, with hypotrichosis and hyper-IgE","type":"related"},{"name":"neth","type":"related"}],"termid":"MONDO:0009735","xrefs":{"Monarch":{"xref_id":"0009735"}}}


id: GO:0051248
data:
  {"annotated_genes":["SJAG_00169","SJAG_00786","SJAG_04291","SJAG_00052","SJAG_02638","SJAG_01942","SJAG_02592","SJAG_02244","SJAG_00475","SJAG_00423","SJAG_05000","SJAG_03501","SJAG_03048","SJAG_00690","SJAG_01528","SJAG_03869","SJAG_02026"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104181],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905785"},{"annotations":[97406,116711,120097,101253],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000766"},{"annotations":[114008,93121],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904689"},{"annotations":[71679,96178,111518,76982,101147,117478],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990625"},{"annotations":[79802,79281],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904293"},{"annotations":[108782,79064],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032435"},{"annotations":[77097],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001125"},{"annotations":[101261],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0141014"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of chemical reactions and pathways involving a protein.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of macromolecule metabolic process","termid":"GO:0010605"},{"relation_name":"is_a","term_name":"regulation of protein metabolic process","termid":"GO:0051246"},{"relation_name":"negatively_regulates","term_name":"protein metabolic process","termid":"GO:0019538"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00052":null,"SJAG_00169":null,"SJAG_00423":null,"SJAG_00475":null,"SJAG_00690":null,"SJAG_00786":null,"SJAG_01528":null,"SJAG_01942":null,"SJAG_02026":null,"SJAG_02244":null,"SJAG_02592":null,"SJAG_02638":null,"SJAG_03048":null,"SJAG_03501":null,"SJAG_03869":null,"SJAG_04291":null,"SJAG_05000":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0032269"],"synonyms":[{"name":"down regulation of cellular protein metabolic process","type":"exact"},{"name":"down regulation of protein metabolic process","type":"exact"},{"name":"down-regulation of cellular protein metabolic process","type":"exact"},{"name":"down-regulation of protein metabolic process","type":"exact"},{"name":"downregulation of cellular protein metabolic process","type":"exact"},{"name":"downregulation of protein metabolic process","type":"exact"},{"name":"inhibition of cellular protein metabolic process","type":"narrow"},{"name":"inhibition of protein metabolic process","type":"narrow"},{"name":"negative regulation of cellular protein metabolic process","type":"exact"},{"name":"negative regulation of cellular protein metabolism","type":"exact"},{"name":"negative regulation of protein metabolism","type":"exact"}],"termid":"GO:0051248","terms_by_termid":{"GO:0032435":null,"GO:0141014":null,"GO:1904293":null,"GO:1904689":null,"GO:1905785":null,"GO:1990625":null,"GO:2000766":null,"GO:2001125":null}}


id: PATO:0001853
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of cerebral spinal fluid.","definition_xrefs":["PATOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"edematous","termid":"PATO:0001450"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrocephalic","termid":"PATO:0001853"}


id: MONDO:0018917
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Marfan syndrome (obsolete MONDO:0018917)","termid":"MONDO:0018917","xrefs":{"Monarch":{"xref_id":"0018917"}}}


id: PBO:0048856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GOLGA2 pseudogene 1","termid":"PBO:0048856"}


id: PATO:0001411
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's having distinct structure.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"structured","termid":"PATO:0001411"}


id: GO:1905522
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of macrophage migration.","definition_xrefs":["GO_REF:0000058","PMID:25749876","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of mononuclear cell migration","termid":"GO:0071676"},{"relation_name":"is_a","term_name":"regulation of macrophage migration","termid":"GO:1905521"},{"relation_name":"negatively_regulates","term_name":"macrophage migration","termid":"GO:1905517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of macrophage migration","synonyms":[{"name":"down regulation of macrophage migration","type":"exact"},{"name":"down-regulation of macrophage migration","type":"exact"},{"name":"downregulation of macrophage migration","type":"exact"},{"name":"inhibition of macrophage migration","type":"narrow"}],"termid":"GO:1905522"}


id: FYPO:0000147
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which the switch from the monopolar to bipolar mode of cell growth (new end take-off; NETO) is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of establishment or maintenance of cell polarity","termid":"FYPO:0000191"},{"relation_name":"is_a","term_name":"abnormal regulation of cell growth","termid":"FYPO:0001392"},{"relation_name":"is_a","term_name":"abnormal cell polarity","termid":"FYPO:0005568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005568"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0005568","FYPO:0001320"],"is_obsolete":false,"name":"abnormal NETO","synonyms":[{"name":"abnormal NETO during vegetative growth","type":"exact"},{"name":"abnormal cell growth mode switching, monopolar to bipolar","type":"exact"},{"name":"abnormal new end take-off","type":"exact"},{"name":"abnormal switch from monopolar to bipolar cell growth","type":"exact"}],"termid":"FYPO:0000147"}


id: FYPO:0006131
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of gluconate measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular gluconate level","synonyms":[{"name":"increased cellular gluconate level during mitotic cell cycle","type":"related"},{"name":"increased cellular gluconate level during vegetative growth","type":"exact"},{"name":"increased gluconate accumulation","type":"related"}],"termid":"FYPO:0006131"}


id: FYPO:0003087
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) in a mutant is normal (i.e. indistinguishable from wild type) at a replication fork barrier in the mating-type region.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal chromatin binding","termid":"FYPO:0003086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000652"],"is_obsolete":false,"name":"normal chromatin binding at mating-type region replication fork barrier","termid":"FYPO:0003087"}


id: MONDO:0007811
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ichthyosis-cheek-eyebrow syndrome is characterized by ichthyosis, prominent full cheeks and sparse lateral eyebrows. It has been described in several individuals from four generations of one family. Transmission is autosomal dominant.","definition_xrefs":["Orphanet:2267"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ichthyosis-cheek-eyebrow syndrome","secondary_identifiers":["UMLS:C1840283","OMIM:146720","SCTID:716097001","MESH:C536084","MEDGEN:326697"],"synonyms":[{"name":"Ice syndrome","type":"related"},{"name":"Sidransky Feinstein Goodman syndrome","type":"related"},{"name":"Sidransky-Feinstein-Goodman syndrome","type":"exact"},{"name":"ichthyosis cheek eyebrow syndrome","type":"related"},{"name":"ichthyosis--cheek--eyebrow syndrome","type":"related"}],"termid":"MONDO:0007811","xrefs":{"Monarch":{"xref_id":"0007811"}}}


id: GO:0106147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of fraxetin.","definition_xrefs":["PMID:29581584","GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coumarin biosynthetic process","termid":"GO:0009805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"fraxetin biosynthesis","termid":"GO:0106147"}


id: MONDO:0012305
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"photosensitive epilepsy","termid":"MONDO:0015643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"photoparoxysmal response 3","secondary_identifiers":["GARD:15464","UMLS:C1835966","MEDGEN:372169","OMIM:609573","MESH:C563695"],"synonyms":[{"name":"PPR3","type":"exact"},{"name":"photoparoxysmal response 3","type":"exact"},{"name":"photoparoxysmal response with or without myoclonic epilepsy","type":"related"}],"termid":"MONDO:0012305","xrefs":{"Monarch":{"xref_id":"0012305"}}}


id: MOD:01974
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-methionine residue to S-methyl-L-methionine.","definition_xrefs":["PubMed:23532849","ChEBI:17728","RESID:AA0616"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated methionine","termid":"MOD:00716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"S-methyl-L-methionine","synonyms":[{"name":"(2S)-2-amino-4-(dimethylsulfonio)butanoate","type":"exact"},{"name":"(3S)-(3-amino-3-carboxypropyl)dimethylsulfanium","type":"exact"},{"name":"S-methyl-L-methionine","type":"exact"},{"name":"S-methylmethionine","type":"exact"},{"name":"S-methylmethioninium","type":"exact"},{"name":"[(3S)-3-amino-3-carboxypropyl](dimethyl)sulfonium","type":"exact"},{"name":"vitamin U","type":"exact"}],"termid":"MOD:01974"}


id: PBO:0049606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 9","termid":"PBO:0049606"}


id: PBO:0120007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 64, pseudogene","termid":"PBO:0120007"}


id: PBO:0071374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L29 pseudogene 33","termid":"PBO:0071374"}


id: PBO:0040623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BANF1 pseudogene 2","termid":"PBO:0040623"}


id: PBO:0067856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 158","termid":"PBO:0067856"}


id: PBO:0070722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L9 pseudogene 27","termid":"PBO:0070722"}


id: PBO:0034455
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_viability_following_cellular_response_to_UV_during_mitotic_S_phase","termid":"PBO:0034455"}


id: GO:0036004
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a GAF protein domain.","definition_xrefs":["GOC:yaf","InterPro:IPR003018"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"GAF domain binding","termid":"GO:0036004"}


id: FYPO:0001034
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of tunicamycin than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002682","FYPO:0005447","FYPO:0000139","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"resistance to tunicamycin","synonyms":[{"name":"resistance to tunicamycin during mitotic cell cycle","type":"related"},{"name":"resistance to tunicamycin during vegetative growth","type":"exact"},{"name":"resistant to TM","type":"exact"},{"name":"resistant to tunicamycin","type":"exact"}],"termid":"FYPO:0001034"}


id: FYPO:0006669
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which one cell mates with two partners, leading to the fusion of three cells. The resulting zygote can then undergo sporulation to form an ascus containing more than four spores.","definition_xrefs":["PMID:30089908","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"abnormal sporulation resulting in formation of ascus with more than four spores","termid":"FYPO:0003263"},{"relation_name":"is_a","term_name":"abnormal mating","termid":"FYPO:0000031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal mating between three cells","synonyms":[{"name":"abnormal conjugation between three cells","type":"exact"},{"name":"abnormal mating among three cells","type":"exact"}],"termid":"FYPO:0006669"}


id: GO:0061534
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of gamma-aminobutyric acid by a cell, in which the gamma-aminobutyric acid acts as a neurotransmitter.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurotransmitter secretion","termid":"GO:0007269"},{"relation_name":"is_a","term_name":"gamma-aminobutyric acid secretion","termid":"GO:0014051"},{"relation_name":"part_of","term_name":"synaptic transmission, GABAergic","termid":"GO:0051932"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0023052","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"gamma-aminobutyric acid secretion, neurotransmission","termid":"GO:0061534"}


id: GO:1990933
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which the microtubule cytoskeleton is attached to the nuclear envelope.","definition_xrefs":["PMID:14655046","PMID:20507227"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule cytoskeleton organization","termid":"GO:0000226"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0000226","GO:0008150","GO:0007010"],"is_obsolete":false,"name":"microtubule cytoskeleton attachment to nuclear envelope","termid":"GO:1990933"}


id: CHEBI:46245
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coenzyme Q10","termid":"CHEBI:46245"}


id: GO:1903123
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of thioredoxin peroxidase activity.","definition_xrefs":["GOC:bf","GOC:PARL","GO_REF:0000059","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of thioredoxin peroxidase activity (obsolete GO:1903123)","synonyms":[{"name":"regulation of TPx activity","type":"exact"},{"name":"regulation of TrxPx activity","type":"exact"},{"name":"regulation of thiol peroxidase activity","type":"exact"}],"termid":"GO:1903123"}


id: PBO:0052319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIAA1191","termid":"PBO:0052319"}


id: GO:0047256
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a beta-D-Gal-(1->4)-beta-D-Glc-(1<->1)-Cer(d18:1(4E)) + UDP-N-acetyl-alpha-D-glucosamine = a beta-D-GlcNAc-(1->3)-beta-D-Gal-(1->4)-beta-D-Glc-(1<->1)-Cer(d18:1(4E)) + H+ + UDP.","definition_xrefs":["RHEA:13905"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.206-RXN","EC:2.4.1.206","Reactome:R-HSA-9846501"],"synonyms":[{"name":"LA2 synthase activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:D-galactosyl-1,4-beta-D-glucosylceramide beta-1,3-acetylglucosaminyltransferase activity","type":"related"},{"name":"beta1->3-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"lactosylceramide beta-acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-lactosylceramide beta-acetylglucosaminyltransferase activity","type":"related"}],"termid":"GO:0047256"}


id: PBO:0048053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin heavy chain 1 pseudogene 2","termid":"PBO:0048053"}


id: PBO:0080431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS51 pseudogene 15","termid":"PBO:0080431"}


id: PR:000044698
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H3.1, initiator methionine removed K9-methylated form (Schizosaccharomyces pombe) whose methylation type is dimethylation. Example: UniProtKB:P09988-1, 2-136, Lys-10, MOD:00084.","definition_xrefs":["PMID:23849629","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hht1/Me(K9)","termid":"PR:000027578"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3.1, initiator methionine removed K9-dimethylated form (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC1834.04","synonyms":[{"name":"Spom-hht1/InitMet-/K9me2","type":"exact"}],"termid":"PR:000044698"}


id: PBO:0055168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2591","termid":"PBO:0055168"}


id: GO:0048091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of establishment of a pattern of pigment in females.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental pigmentation","termid":"GO:0048087"},{"relation_name":"is_a","term_name":"regulation of female pigmentation","termid":"GO:0048089"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"female pigmentation","termid":"GO:0048095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of female pigmentation","synonyms":[{"name":"activation of female pigmentation","type":"narrow"},{"name":"stimulation of female pigmentation","type":"narrow"},{"name":"up regulation of female pigmentation","type":"exact"},{"name":"up-regulation of female pigmentation","type":"exact"},{"name":"upregulation of female pigmentation","type":"exact"}],"termid":"GO:0048091"}


id: PBO:0013761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP cyclohydrolase II Urg1 (predicted)","termid":"PBO:0013761"}


id: FYPO:0009043
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of higher concentrations of potassium chloride and sodium dodecyl sulfate than normal.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0002682","FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"resistance to potassium chloride and sodium dodecyl sulfate","synonyms":[{"name":"resistance to potassium chloride and sodium dodecyl sulfate during mitotic cell cycle","type":"related"},{"name":"resistance to potassium chloride and sodium dodecyl sulfate during vegetative growth","type":"exact"},{"name":"resistance to potassium chloride and sodium dodecyl sulfate in combination","type":"exact"},{"name":"resistant to potassium chloride and sodium dodecyl sulfate","type":"exact"}],"termid":"FYPO:0009043"}


id: PATO:0000499
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A duration quality of a process which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"duration","termid":"PATO:0001309"},{"relation_name":"is_a","term_name":"decreased process quality","termid":"PATO:0002302"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased duration","secondary_identifiers":["PATO:0000716"],"synonyms":[{"name":"decreased period","type":"exact"},{"name":"decreased time","type":"exact"},{"name":"fast time","type":"related"},{"name":"low period","type":"exact"},{"name":"shortened period","type":"exact"}],"termid":"PATO:0000499"}


id: PBO:0042743
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromere protein Q","termid":"PBO:0042743"}


id: MONDO:1011225
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Entropion that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"entropion, non-human animal","termid":"MONDO:1010323"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"entropion, dog","secondary_identifiers":["OMIA:000337-9615"],"termid":"MONDO:1011225","xrefs":{"Monarch":{"xref_id":"1011225"}}}


id: MONDO:0020287
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pulmonary artery or pulmonary branch anomaly (obsolete MONDO:0020287)","secondary_identifiers":["Orphanet:98719"],"termid":"MONDO:0020287","xrefs":{"Monarch":{"xref_id":"0020287"}}}


id: PBO:0046822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid binding protein 1","termid":"PBO:0046822"}


id: FYPO:0001551
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to zinc ion starvation is higher than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level during vegetative growth","termid":"FYPO:0001327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0006551","FYPO:0001320"],"is_obsolete":false,"name":"increased protein level during cellular response to zinc ion starvation","synonyms":[{"name":"increased protein accumulation during cellular response to zinc ion starvation","type":"related"},{"name":"increased protein level during cellular response to zinc ion depletion","type":"exact"},{"name":"increased protein level during cellular response to zinc ion deprivation","type":"exact"},{"name":"increased protein level during cellular response to zinc ion starvation during mitotic cell cycle","type":"related"},{"name":"increased protein level during cellular response to zinc ion starvation during vegetative growth","type":"exact"},{"name":"increased protein level during cellular response to zinc starvation","type":"exact"}],"termid":"FYPO:0001551"}


id: GO:0016488
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of the sesquiterpenoid alcohol farnesol, 3,7,11-trimethyl-2,6,10,dodecatrien-1-ol.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyprenol catabolic process","termid":"GO:0016095"},{"relation_name":"is_a","term_name":"sesquiterpenoid catabolic process","termid":"GO:0016107"},{"relation_name":"is_a","term_name":"farnesol metabolic process","termid":"GO:0016487"},{"relation_name":"is_a","term_name":"primary alcohol catabolic process","termid":"GO:0034310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"farnesol catabolic process","synonyms":[{"name":"farnesol breakdown","type":"exact"},{"name":"farnesol catabolism","type":"exact"},{"name":"farnesol degradation","type":"exact"}],"termid":"GO:0016488"}


id: GO:0039527
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont interferes with, inhibits or disrupts a TRAF-mediated signal transduction pathway in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:bf","PMID:33372174","GOC:sp","PMID:28522607","PMID:27387501","PMID:31311877","PMID:20335533"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host signal transduction pathway","termid":"GO:0052029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host TRAF-mediated signal transduction","secondary_identifiers":["GO:0039547"],"synonyms":[{"name":"disruption by virus of host TRAF-mediated signal transduction","type":"narrow"},{"name":"inhibition of host TRAF-mediated signal transduction by virus","type":"exact"},{"name":"inhibition of host TRAFs by virus","type":"narrow"},{"name":"negative regulation by virus of host TRAF-mediated signal transduction","type":"broad"},{"name":"suppression by virus of host TRAF activity","type":"exact"},{"name":"suppression by virus of host TRAF-mediated signal transduction","type":"exact"},{"name":"suppression by virus of host tumor necrosis factor receptor-associated factor signaling","type":"exact"}],"termid":"GO:0039527"}


id: MONDO:0011859
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete distal myopathy with early respiratory muscle involvement (obsolete MONDO:0011859)","termid":"MONDO:0011859","xrefs":{"Monarch":{"xref_id":"0011859"}}}


id: PBO:0117044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane bound glycerophospholipid O-acyltransferase 1","termid":"PBO:0117044"}


id: PBO:0011068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein, adhesion molecule (predicted)","termid":"PBO:0011068"}


id: PBO:0012263
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerate phosphomutase","termid":"PBO:0012263"}


id: PBO:0070844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13a pseudogene 23","termid":"PBO:0070844"}


id: GO:0052375
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process by which an organism avoids the effects of nitric oxide produced as a defense response by the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete evasion or tolerance by organism of symbiont-produced nitric oxide (obsolete GO:0052375)","synonyms":[{"name":"evasion or tolerance by organism of symbiont NO","type":"exact"},{"name":"evasion or tolerance by organism of symbiont nitric oxide","type":"exact"},{"name":"evasion or tolerance by organism of symbiont-produced NO","type":"exact"},{"name":"evasion or tolerance by organism of symbiont-produced nitric oxide","type":"exact"},{"name":"evasion or tolerance of NO produced by symbiont in response to organism","type":"exact"},{"name":"evasion or tolerance of nitric oxide produced by symbiont in response to organism","type":"exact"}],"termid":"GO:0052375"}


id: PBO:0062292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily M member 3","termid":"PBO:0062292"}


id: GO:0048439
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the flower are generated and organized.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"shoot system morphogenesis","termid":"GO:0010016"},{"relation_name":"is_a","term_name":"post-embryonic plant morphogenesis","termid":"GO:0090698"},{"relation_name":"part_of","term_name":"flower development","termid":"GO:0009908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"flower morphogenesis","secondary_identifiers":["GO:0048411"],"termid":"GO:0048439"}


id: PBO:0030382
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_extent_of_cell_population_growth","termid":"PBO:0030382"}


id: GO:1904018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vasculature development.","definition_xrefs":["GOC:TermGenie","PMID:21472453","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of vasculature development","termid":"GO:1901342"},{"relation_name":"positively_regulates","term_name":"vasculature development","termid":"GO:0001944"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vasculature development","synonyms":[{"name":"activation of vascular system development","type":"related"},{"name":"activation of vasculature development","type":"narrow"},{"name":"positive regulation of vascular system development","type":"related"},{"name":"up regulation of vascular system development","type":"related"},{"name":"up regulation of vasculature development","type":"exact"},{"name":"up-regulation of vascular system development","type":"related"},{"name":"up-regulation of vasculature development","type":"exact"},{"name":"upregulation of vascular system development","type":"related"},{"name":"upregulation of vasculature development","type":"exact"}],"termid":"GO:1904018"}


id: GO:0050603
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: AH(2) + O2 + thiophene-2-carbonyl-CoA = 5-hydroxythiophene-2-carbonyl-CoA + A + H2O + H+.","definition_xrefs":["RHEA:18929","EC:1.14.99.35"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"thiophene-2-carbonyl-CoA monooxygenase activity","secondary_identifiers":["MetaCyc:1.14.99.35-RXN","UM-BBD_reactionID:r1235","KEGG_REACTION:R05742"],"synonyms":[{"name":"thiophene-2-carbonyl-CoA, hydrogen-donor:oxygen oxidoreductase activity","type":"related"},{"name":"thiophene-2-carboxyl-CoA dehydrogenase activity","type":"related"},{"name":"thiophene-2-carboxyl-CoA hydroxylase activity","type":"related"},{"name":"thiophene-2-carboxyl-CoA monooxygenase activity","type":"related"}],"termid":"GO:0050603"}


id: GO:0008129
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of proteins with broad specificity for peptide bonds, with preference for a residue bearing a large hydrophobic side chain at the P2 position. Does not accept Val at P1'.","definition_xrefs":["EC:3.4.22.14"],"gene_count":0,"genotype_count":0,"name":"obsolete actinidain activity (obsolete GO:0008129)","synonyms":[{"name":"actinidain activity","type":"exact"},{"name":"actinidia anionic protease activity","type":"narrow"},{"name":"actinidin activity","type":"related"},{"name":"proteinase A2 of actinidia chinensis","type":"related"}],"termid":"GO:0008129"}


id: PBO:0030468
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_pantothenate_import","termid":"PBO:0030468"}


id: PBO:0078120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 8-2","termid":"PBO:0078120"}


id: GO:0004964
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with luteinizing hormone (also called lutropin) to initiate a change in cell activity.","definition_xrefs":["PMID:1922095","ISBN:0198506732","PMID:18848524"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"},{"relation_name":"is_a","term_name":"protein-hormone receptor activity","termid":"GO:0016500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"luteinizing hormone receptor activity","secondary_identifiers":["GO:0004976"],"synonyms":[{"name":"LH receptor","type":"exact"},{"name":"LHR","type":"exact"},{"name":"lutropin receptor","type":"exact"},{"name":"lutropin-choriogonadotropic hormone receptor","type":"related"}],"termid":"GO:0004964"}


id: GO:0015535
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: fucose(out) + H+(out) = fucose(in) + H+(in).","definition_xrefs":["TC:2.A.1.7.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose:proton symporter activity","termid":"GO:0009679"},{"relation_name":"is_a","term_name":"fucose transmembrane transporter activity","termid":"GO:0015150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"fucose:proton symporter activity","secondary_identifiers":["RHEA:29023","MetaCyc:TRANS-RXN-20"],"synonyms":[{"name":"fucose:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015535"}


id: GO:0048014
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by an angiopoietin binding to the Tie receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:11283723","GOC:ceb","GOC:signaling","PMID:11566266"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor protein tyrosine kinase signaling pathway","termid":"GO:0007169"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"Tie signaling pathway","synonyms":[{"name":"Tek receptor signaling","type":"exact"},{"name":"Tie receptor signaling pathway","type":"exact"},{"name":"Tie receptor signalling pathway","type":"exact"},{"name":"angiopoietin-Tie signaling pathway","type":"narrow"},{"name":"angiopoietin/Tie signaling pathway","type":"narrow"}],"termid":"GO:0048014"}


id: GO:1903066
data:
  {"annotated_genes":["SJAG_01373","SJAG_02392"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92774,97669],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903067"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein localization to cell tip.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:24554432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization","termid":"GO:0032880"},{"relation_name":"regulates","term_name":"protein localization to cell tip","termid":"GO:1990151"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01373":null,"SJAG_02392":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of protein localization to cell tip","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of protein localisation to cell tip","type":"exact"}],"termid":"GO:1903066","terms_by_termid":{"GO:1903067":null}}


id: GO:0102863
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-18:3-2-18:1-phosphatidylcholine + O2 + a reduced electron acceptor = 1-18:3-2-18:2-phosphatidylcholine + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-18:3-2-18:1-phosphatidylcholine desaturase activity (obsolete GO:0102863)","termid":"GO:0102863"}


id: GO:0005952
data:
  {"annotated_genes":["SJAG_04312","SJAG_01245"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72715,75089],"is_not":false,"summary":null,"term":"GO:0005952"}]},"cv_name":"cellular_component","definition":"An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer.","definition_xrefs":["PMID:18178622"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"serine/threonine protein kinase complex","termid":"GO:1902554"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01245":null,"SJAG_04312":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"cAMP-dependent protein kinase complex","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"3',5' cAMP-dependent protein kinase complex","type":"exact"},{"name":"3',5'-cAMP-dependent protein kinase complex","type":"exact"},{"name":"PKA","type":"related"},{"name":"adenosine 3',5'-cyclophosphate-dependent protein kinase complex","type":"exact"},{"name":"cyclic AMP-dependent protein kinase complex","type":"exact"}],"termid":"GO:0005952","terms_by_termid":{"GO:0005952":null}}


id: PBO:0058237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4525","termid":"PBO:0058237"}


id: MONDO:0004922
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by an impairment in the development of an individual's motor coordination skills; this impairment in motor development is not due to a medical condition.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specific developmental disorder","termid":"MONDO:0000592"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"developmental coordination disorder","secondary_identifiers":["MEDGEN:41511","DOID:9923","ICD9:315.4","MESH:D019957","NCIT:C92561","SCTID:27544004","UMLS:C0011757"],"synonyms":[{"name":"clumsy child syndrome","type":"exact"},{"name":"development coordination disorder","type":"exact"},{"name":"developmental dyspraxia","type":"exact"}],"termid":"MONDO:0004922","xrefs":{"Monarch":{"xref_id":"0004922"}}}


id: PBO:0031233
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_long_tract_gene_conversion","termid":"PBO:0031233"}


id: PBO:0073181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenoprotein K pseudogene 3","termid":"PBO:0073181"}


id: GO:0098671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which a virion attaches to a host cell by binding to a receptor on the host cell surface that does not mediate or trigger entry into the host cell. This binding is typically reversible and enhances significantly infectivity by concentrating the virus in the vicinity of its entry receptors, or bringing it to an organ in which its target cells are located.","definition_xrefs":["VZ:3943","PMID:18351291"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor-mediated virion attachment to host cell","termid":"GO:0046813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adhesion receptor-mediated virion attachment to host cell","synonyms":[{"name":"viral attachment to host adhesion receptor","type":"exact"}],"termid":"GO:0098671"}


id: PBO:0059889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND1 pseudogene 12","termid":"PBO:0059889"}


id: PR:O14055
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tyrosine--tRNA ligase, cytoplasmic that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04367"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine--tRNA ligase, cytoplasmic (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1672.05c","secondary_identifiers":["UniProtKB:O14055"],"synonyms":[{"name":"Spom972h-YARS","type":"exact"},{"name":"TyrRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tyrosyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14055"}


id: GO:0097514
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A specialized envelope lying outside the cell membrane of a spore derived from a product of meiosis.","definition_xrefs":["GOC:mah","GOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spore wall","termid":"GO:0031160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005618"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005618"],"is_obsolete":false,"name":"sexual spore wall","termid":"GO:0097514"}


id: PBO:0088897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall glycoside hydrolase, family 5","termid":"PBO:0088897"}


id: PBO:0046626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group W member 7","termid":"PBO:0046626"}


id: GO:0042199
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving cyanuric acid, a suspected gastrointestinal or liver toxicant, and a potential degradation product of triazine herbicides, such as atrazine and simazine. It is widely used for the stabilization of available chlorine in swimming pool water and is also the starting compound for the synthesis of many organic derivatives.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"s-triazine compound metabolic process","termid":"GO:0018965"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cyanuric acid metabolic process","synonyms":[{"name":"cyanuric acid metabolism","type":"exact"}],"termid":"GO:0042199"}


id: PBO:0087103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal protein 51 (rp51) of the small (40s) subunit; homologous to mammalian ribosomal protein S17, no bacterial homolog; RPS17B has a paralog, RPS17A, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress","termid":"PBO:0087103"}


id: PBO:0017592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial F1-ATPase chaperone Atp12 (predicted)","termid":"PBO:0017592"}


id: MONDO:0007136
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"anorectal malformation","termid":"MONDO:0019938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hereditary anorectal anomalies","secondary_identifiers":["UMLS:C3495676","OMIM:107100","MEDGEN:501217","MESH:C567938"],"synonyms":[{"name":"anorectal anomalies","type":"related"},{"name":"genetic anorectal anomalies","type":"exact"}],"termid":"MONDO:0007136","xrefs":{"Monarch":{"xref_id":"0007136"}}}


id: PBO:0064787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase, Mg2+/Mn2+ dependent 1G","termid":"PBO:0064787"}


id: PBO:0046203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin B","termid":"PBO:0046203"}


id: FYPO:0006369
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in one or more heterochromatin domains occurs to a greater extent than normal.","definition_xrefs":["PMID:29214404","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 dimethylation during vegetative growth","termid":"FYPO:0000873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0002494","FYPO:0002274","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased histone H3-K9 dimethylation at heterochromatin domain during vegetative growth","synonyms":[{"name":"increased histone H3 K9 dimethylation at heterochromatin domain during vegetative growth","type":"exact"},{"name":"increased histone H3-K9 dimethylation at heterochromatin domain during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 dimethylation at heterochromatin domain during vegetative growth","type":"exact"},{"name":"increased histone H3K9me2 at heterochromatin domain during vegetative growth","type":"exact"},{"name":"increased histone lysine H3 K9 dimethylation at heterochromatin domain during vegetative growth","type":"exact"}],"termid":"FYPO:0006369"}


id: PBO:0116830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein, involved in ribosome biogenesis Nop6","termid":"PBO:0116830"}


id: MONDO:0035838
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Castleman disease","termid":"MONDO:0015564"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"idiopathic multicentric Castleman disease","secondary_identifiers":["UMLS:C5197665","MEDGEN:1680858","GARD:22309","Orphanet:570431"],"synonyms":[{"name":"HHV-8-negative multicentric Castleman disease","type":"exact"},{"name":"Human herpesvirus-8-negative multicentric Castleman disease","type":"exact"}],"termid":"MONDO:0035838","xrefs":{"Monarch":{"xref_id":"0035838"}}}


id: MONDO:0006377
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Malignant mesothelioma that arises from the pleura. It is characterized by the presence of epithelioid and sarcomatoid components, with each component representing at least 10% of the tumor.","definition_xrefs":["NCIT:C45665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant biphasic mesothelioma","termid":"MONDO:0006109"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"pleural biphasic mesothelioma","secondary_identifiers":["EFO:1000483","MEDGEN:311130","UMLS:C1709570"],"synonyms":[{"name":"pleural biphasic mesothelioma","type":"exact"}],"termid":"MONDO:0006377","xrefs":{"Monarch":{"xref_id":"0006377"}}}


id: MONDO:0019198
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Sympathetic ophthalmia (SO) is a bilateral granulomatous anterior uveitis usually occurring within the three months following trauma or a surgical procedure involving one eye.","definition_xrefs":["Orphanet:79098"],"direct_ancestors":[{"relation_name":"is_a","term_name":"panuveitis","termid":"MONDO:0017255"},{"relation_name":"is_a","term_name":"non-infectious anterior uveitis","termid":"MONDO:0017634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"sympathetic ophthalmia","secondary_identifiers":["MESH:D009879","DOID:12029","SCTID:75315001","GARD:18939","ICD10CM:H44.13","icd11.foundation:1639718137","UMLS:C0029077","MEDGEN:45203","EFO:1001205","ICD9:360.11","MedDRA:10042742"],"synonyms":[{"name":"sympathetic ophthalmia","type":"exact"},{"name":"sympathetic uveitis","type":"exact"}],"termid":"MONDO:0019198","xrefs":{"Monarch":{"xref_id":"0019198"}}}


id: GO:0140662
data:
  {"annotated_genes":["SJAG_04511","SJAG_00447","SJAG_00609","SJAG_01510","SJAG_01002","SJAG_03320","SJAG_02926","SJAG_02378","SJAG_02875","SJAG_01615","SJAG_03570","SJAG_00790","SJAG_03237","SJAG_01186","SJAG_04055","SJAG_00564","SJAG_04121","SJAG_01874","SJAG_01664"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[57094,58019,58432,59639,60370,60704,60823,62098,63091,65417,65671,66173,66499,67733,68261,68415,69118,70660,71384],"is_not":false,"summary":null,"term":"GO:0140662"}]},"cv_name":"molecular_function","definition":"Binding to a protein or a protein-containing complex to assist the protein folding process, driven by ATP hydrolysis.","definition_xrefs":["PMID:27365453"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein folding chaperone","termid":"GO:0044183"},{"relation_name":"is_a","term_name":"ATP-dependent activity","termid":"GO:0140657"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00447":null,"SJAG_00564":null,"SJAG_00609":null,"SJAG_00790":null,"SJAG_01002":null,"SJAG_01186":null,"SJAG_01510":null,"SJAG_01615":null,"SJAG_01664":null,"SJAG_01874":null,"SJAG_02378":null,"SJAG_02875":null,"SJAG_02926":null,"SJAG_03237":null,"SJAG_03320":null,"SJAG_03570":null,"SJAG_04055":null,"SJAG_04121":null,"SJAG_04511":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"ATP-dependent protein folding chaperone","references_by_uniquename":{"GO_REF:0000002":null},"termid":"GO:0140662","terms_by_termid":{"GO:0140662":null}}


id: PBO:0090154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar protein Nop52 family Rrp1","termid":"PBO:0090154"}


id: PBO:0075762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/arginine repetitive matrix 2","termid":"PBO:0075762"}


id: PBO:0057188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 346","termid":"PBO:0057188"}


id: FYPO:0003946
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_03596:allele-1":{"allele_type":"amino_acid_mutation","description":"L264P,P442T","gene_uniquename":"SJAG_03596","name":"cdc15-A","uniquename":"SJAG_03596:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[121351],"is_not":false,"summary":null,"term":"FYPO:0003946"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the site of cell division begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell division site","termid":"FYPO:0001401"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01143":null,"SJAG_01665":null,"SJAG_03596":null},"genotype_count":1,"genotypes_by_uniquename":{"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta":{"display_name":"cdc15-A(L264P,P442T aa) mid1delta","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_03596","SJAG_01143"],"name":"delayed onset of protein localization to cell division site","references_by_uniquename":{"PMID:25866389":null},"synonyms":[{"name":"delayed onset of protein localisation to cell division site","type":"exact"},{"name":"delayed onset of protein localization to cell division site during mitotic cell cycle","type":"related"},{"name":"delayed onset of protein localization to cell division site during vegetative growth","type":"exact"},{"name":"delayed onset of protein recruitment to cell division site","type":"related"},{"name":"delayed protein localization to cell division site","type":"exact"}],"termid":"FYPO:0003946","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0003946":null}}


id: PBO:0061088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NK2 homeobox 6","termid":"PBO:0061088"}


id: PR:Q9HDV3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBP19A11.07c gene.","definition_xrefs":["UniProtKB:Q9HDV3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hid-1 family protein P19A11.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP19A11.07c","synonyms":[{"name":"Down-regulated in multiple cancers 1 homolog 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPBP19A11.07c","type":"exact"}],"termid":"PR:Q9HDV3"}


id: SO:0002116
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A processed transcript that does not contain a CDS that fullfills annotation criteria and not necessarily functionally non-coding.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudogene_processed_transcript","termid":"SO:0002111"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polymorphic_pseudogene_processed_transcript","synonyms":[{"name":"polymorphic pseudogene processed transcript","type":"exact"}],"termid":"SO:0002116"}


id: GO:0140627
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the DesCEND (destruction via C-end degron) pathway. In the DesCEND pathway, C-terminal residues (C-end degrons) in substrates are recognized by Cul2-RING and Cul4-RING E3 ligases, whereupon the substrates are linked to ubiquitin and then delivered to the proteasome for degradation. C-end degrons can be present in full-length proteins, truncated proteins or proteolytically cleaved forms.","definition_xrefs":["PMID:29775578","PMID:29779948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteasome-mediated ubiquitin-dependent protein catabolic process","termid":"GO:0043161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"ubiquitin-dependent protein catabolic process via the C-end degron rule pathway","synonyms":[{"name":"DesCEND","type":"exact"}],"termid":"GO:0140627"}


id: GO:0090485
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The maintenance of the standard number of chromosomes in a cell.","definition_xrefs":["GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete chromosome number maintenance (obsolete GO:0090485)","synonyms":[{"name":"diploidization","type":"related"},{"name":"haploidization","type":"related"}],"termid":"GO:0090485"}


id: PBO:0077235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane and coiled-coil domain family 1 pseudogene 1","termid":"PBO:0077235"}


id: PBO:0081250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 22","termid":"PBO:0081250"}


id: PBO:0060934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear factor of activated T cells 3","termid":"PBO:0060934"}


id: PBO:0078743
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA methyltransferase 5","termid":"PBO:0078743"}


id: GO:0009222
data:
  {"annotated_genes":["SJAG_03676"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78196],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006256"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleotide catabolic process","termid":"GO:0006244"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleotide metabolic process","termid":"GO:0009218"},{"relation_name":"is_a","term_name":"ribonucleotide catabolic process","termid":"GO:0009261"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03676":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"pyrimidine ribonucleotide catabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"pyrimidine ribonucleotide breakdown","type":"exact"},{"name":"pyrimidine ribonucleotide catabolism","type":"exact"},{"name":"pyrimidine ribonucleotide degradation","type":"exact"}],"termid":"GO:0009222","terms_by_termid":{"GO:0006256":null}}


id: MONDO:0020693
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign form of phosphorylase kinase deficiency caused by variants in PHKA2 or PHKG2 and characterized by hepatomegaly, growth retardation, and mild delay in motor development during childhood.","definition_xrefs":["Orphanet:264580"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"metabolic disease","termid":"MONDO:0005066"},{"relation_name":"is_a","term_name":"disorder of glycogen metabolism","termid":"MONDO:0002412"},{"relation_name":"is_a","term_name":"liver disorder","termid":"MONDO:0005154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0037792","MONDO:0004335","MONDO:0005066"],"is_obsolete":false,"name":"glycogen storage disease due to liver phosphorylase kinase deficiency","secondary_identifiers":["GARD:17261","MEDGEN:453209","UMLS:C2012260"],"termid":"MONDO:0020693","xrefs":{"Monarch":{"xref_id":"0020693"}}}


id: PBO:0081977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and SCAN domain containing 4","termid":"PBO:0081977"}


id: FYPO:0005816
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which microtubule-based movement is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal microtubule-based movement","synonyms":[{"name":"normal microtubule-based movement during mitotic cell cycle","type":"related"},{"name":"normal microtubule-based movement during vegetative growth","type":"exact"}],"termid":"FYPO:0005816"}


id: GO:0007077
data:
  {"annotated_genes":["SJAG_04578","SJAG_00840","SJAG_00680"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112309],"is_not":false,"summary":null,"term":"GO:0007077"},{"annotations":[105480],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140516"},{"annotations":[95650,105483],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905557"}]},"cv_name":"biological_process","definition":"The mitotic cell cycle process in which the controlled partial or complete breakdown of the nuclear membranes during occurs during mitosis.","definition_xrefs":["GOC:bf","PMID:32848252"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear membrane disassembly","termid":"GO:0051081"},{"relation_name":"is_a","term_name":"mitotic cell cycle process","termid":"GO:1903047"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00680":null,"SJAG_00840":null,"SJAG_04578":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0061024","GO:0008150","GO:0007049"],"is_obsolete":false,"name":"mitotic nuclear membrane disassembly","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-2980766"],"synonyms":[{"name":"NEB","type":"broad"},{"name":"local NEB","type":"broad"},{"name":"mitotic nuclear envelope breakdown","type":"exact"},{"name":"mitotic nuclear envelope catabolism","type":"related"},{"name":"mitotic nuclear envelope degradation","type":"related"},{"name":"mitotic nuclear envelope disassembly","type":"related"},{"name":"nuclear envelope breakdown","type":"broad"}],"termid":"GO:0007077","terms_by_termid":{"GO:0007077":null,"GO:0140516":null,"GO:1905557":null}}


id: PBO:0083351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps the verified gene HIP1/YGR191W","termid":"PBO:0083351"}


id: PBO:0035838
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_transport_along_microtubule_to_cell_tip_during_vegetative_growth","termid":"PBO:0035838"}


id: PBO:0056425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiosis regulator and mRNA stability factor 1","termid":"PBO:0056425"}


id: PBO:0072803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"senescence associated long non-coding RNA 2","termid":"PBO:0072803"}


id: MONDO:0000608
data:
  {"annotated_genes":["SJAG_02330","SJAG_02208"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87914,87913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014891"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited kidney disorder","termid":"MONDO:0100191"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02208":null,"SJAG_02330":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"familial juvenile hyperuricemic nephropathy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NANDO:2100014","OMIMPS:162000","SCTID:46785007","MEDGEN:75651","UMLS:C0268113","MESH:C537696","NANDO:2200139","DOID:0060062"],"synonyms":[{"name":"FJHN","type":"exact"},{"name":"familial juvenile gouty nephropathy","type":"exact"},{"name":"familial juvenile hyperuricemic nephropathy","type":"exact"},{"name":"familial nephropathy associated with hyperuricemia","type":"exact"},{"name":"familial nephropathy with gout","type":"exact"},{"name":"gouty nephropathy, familial","type":"related"},{"name":"gouty nephropathy, familial juvenile","type":"exact"},{"name":"juvenile gout","type":"exact"},{"name":"juvenile gouty nephropathy","type":"exact"},{"name":"nephropathy, familial, with gout","type":"exact"},{"name":"tubulointerstitial kidney disease","type":"exact"}],"termid":"MONDO:0000608","terms_by_termid":{"MONDO:0014891":null},"xrefs":{"Monarch":{"xref_id":"0000608"}}}


id: PBO:0080935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YY1 transcription factor pseudogene 1","termid":"PBO:0080935"}


id: PATO:0001120
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001120 relative momentum value (obsolete PATO:0001120)","termid":"PATO:0001120"}


id: GO:0008508
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in).","definition_xrefs":["TC:2.A.28.-.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bile acid transmembrane transporter activity","termid":"GO:0015125"},{"relation_name":"is_a","term_name":"monocarboxylate:sodium symporter activity","termid":"GO:0140161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"bile acid:sodium symporter activity","secondary_identifiers":["Reactome:R-HSA-433089","Reactome:R-HSA-194121","Reactome:R-HSA-194187"],"synonyms":[{"name":"sodium/bile acid symporter activity","type":"exact"}],"termid":"GO:0008508"}


id: PR:O42903
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rud3 gene.","definition_xrefs":["UniProtKB:O42903","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRIP domain-containing protein C119.12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC119.12","synonyms":[{"name":"Spom972h-rud3","type":"exact"}],"termid":"PR:O42903"}


id: GO:0045736
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity.","definition_xrefs":["GOC:go_curators","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cyclin-dependent protein serine/threonine kinase activity","termid":"GO:0000079"},{"relation_name":"is_a","term_name":"negative regulation of cell cycle","termid":"GO:0045786"},{"relation_name":"is_a","term_name":"negative regulation of protein serine/threonine kinase activity","termid":"GO:0071901"},{"relation_name":"is_a","term_name":"negative regulation of cyclin-dependent protein kinase activity","termid":"GO:1904030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"negative regulation of cyclin-dependent protein serine/threonine kinase activity","termid":"GO:0045736"}


id: GO:0097209
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A specialized secretory organelle found in keratinocytes and involved in the formation of an impermeable, lipid-containing membrane that serves as a water barrier and is required for correct skin barrier function.","definition_xrefs":["GOC:cjm","Wikipedia:Lamellar_granule"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lamellar body","termid":"GO:0042599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0031410"],"is_obsolete":false,"name":"epidermal lamellar body","termid":"GO:0097209"}


id: PBO:0056786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microfibril associated protein 3","termid":"PBO:0056786"}


id: PBO:0034098
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-realized_in","termid":"PBO:0034098"}


id: PBO:0050209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 26","termid":"PBO:0050209"}


id: GO:0015898
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement amiloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Amiloride is a potent and specific inhibitor of sodium ion entry into cells. It is used as a potassium-sparing diuretic.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete amiloride transport (obsolete GO:0015898)","termid":"GO:0015898"}


id: PBO:0078889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon CTG) 2-1","termid":"PBO:0078889"}


id: FYPO:0004605
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the total distance travelled by the SPB during horsetail movement is decreased. Horsetail movement is the oscillatory movement of the nucleus that takes place during meiotic prophase I. PMID:24954111","definition_xrefs":["PomBase:mlr","GO:0030989"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal horsetail movement","termid":"FYPO:0000197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"decreased distance travelled by the spindle pole body during horsetail movement","synonyms":[{"name":"decreased dynein-driven meiotic oscillatory nuclear movement","type":"related"},{"name":"decreased horsetail nuclear movement","type":"related"},{"name":"reduced horsetail movement","type":"related"}],"termid":"FYPO:0004605"}


id: PBO:0073568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sonic hedgehog signaling molecule","termid":"PBO:0073568"}


id: GO:0009742
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals mediated by the detection of brassinosteroid.","definition_xrefs":["GOC:sm","PMID:16699538"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway","termid":"GO:0007166"},{"relation_name":"is_a","term_name":"steroid hormone receptor signaling pathway","termid":"GO:0043401"},{"relation_name":"part_of","term_name":"cellular response to brassinosteroid stimulus","termid":"GO:0071367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"brassinosteroid mediated signaling pathway","synonyms":[{"name":"brassinosteroid mediated signalling","type":"exact"}],"termid":"GO:0009742"}


id: GO:0015850
data:
  {"annotated_genes":["SJAG_03595","SJAG_02323","SJAG_02375","SJAG_00671","SJAG_03718","SJAG_01722","SJAG_00261","SJAG_02962","SJAG_02152","SJAG_01590","SJAG_03808","SJAG_03247","SJAG_00355","SJAG_04506","SJAG_01329","SJAG_03652","SJAG_01407"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110043,96055,104432,108159,111209,93295,113182,118079],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120011"},{"annotations":[63023,73684,78741],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032366"},{"annotations":[90227],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990556"},{"annotations":[73769,74766],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904679"},{"annotations":[119331,91951,120629,91952],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903090"},{"annotations":[119332,91954,91953,120630],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903091"},{"annotations":[91955,91956,120631,119333],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903092"}]},"cv_name":"biological_process","definition":"The directed movement of an organic hydroxy compound (organic alcohol) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. An organic hydroxy compound is an organic compound having at least one hydroxy group attached to a carbon atom.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport","termid":"GO:0006810"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00261":null,"SJAG_00355":null,"SJAG_00671":null,"SJAG_01329":null,"SJAG_01407":null,"SJAG_01590":null,"SJAG_01722":null,"SJAG_02152":null,"SJAG_02323":null,"SJAG_02375":null,"SJAG_02962":null,"SJAG_03247":null,"SJAG_03595":null,"SJAG_03652":null,"SJAG_03718":null,"SJAG_03808":null,"SJAG_04506":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"organic hydroxy compound transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"organic alcohol transport","type":"exact"}],"termid":"GO:0015850","terms_by_termid":{"GO:0032366":null,"GO:0120011":null,"GO:1903090":null,"GO:1903091":null,"GO:1903092":null,"GO:1904679":null,"GO:1990556":null}}


id: PBO:0075049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-12","termid":"PBO:0075049"}


id: PBO:0090289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KH domain RNA binding protein, vigilin","termid":"PBO:0090289"}


id: PBO:0071094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 96","termid":"PBO:0071094"}


id: FYPO:0007448
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which autophagic degradation of the endoplasmic reticulum is normal (i.e. indistinguishable from wild type) when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah","PMID:32735772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process","termid":"FYPO:0000627"},{"relation_name":"is_a","term_name":"abnormal macroautophagy during nitrogen starvation","termid":"FYPO:0004670"},{"relation_name":"is_a","term_name":"abnormal reticulophagy","termid":"FYPO:0008083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"normal reticulophagy during nitrogen starvation","synonyms":[{"name":"normal ER autophagy during nitrogen starvation","type":"exact"},{"name":"normal ER degradation during nitrogen starvation","type":"related"},{"name":"normal ER-phagy during nitrogen starvation","type":"exact"},{"name":"normal endoplasmic reticulum autophagy during nitrogen starvation","type":"exact"},{"name":"normal reticulophagy during nitrogen depletion","type":"exact"},{"name":"normal reticulophagy during nitrogen deprivation","type":"exact"}],"termid":"FYPO:0007448"}


id: MONDO:0007778
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A condition in which there is an abnormally increased distance between two organs or bodily parts; most often, this term is referring to an increased distance between the orbits (orbital hypertelorism).","definition_xrefs":["NCIT:C34715"],"gene_count":0,"genotype_count":0,"name":"obsolete hypertelorism (obsolete MONDO:0007778)","secondary_identifiers":["HP:0000316","MESH:D006972","OMIM:145400","ICD9:376.41","SCTID:22006008"],"synonyms":[{"name":"hypertelorism","type":"exact"},{"name":"hypertelorism of orbit","type":"exact"},{"name":"obsolete hypertelorism (disease)","type":"exact"}],"termid":"MONDO:0007778","xrefs":{"Monarch":{"xref_id":"0007778"}}}


id: PBO:0070809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 39","termid":"PBO:0070809"}


id: PBO:0027466
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_wall_thickness_at_new_end_during_vegetative_growth","termid":"PBO:0027466"}


id: GO:0140914
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed import of zinc(2+) from the cytosol, across an organelle membrane, into a secretory vesicle.","definition_xrefs":["PMID:19496757"],"direct_ancestors":[{"relation_name":"is_a","term_name":"zinc ion import into organelle","termid":"GO:0062111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"zinc ion import into secretory vesicle","termid":"GO:0140914"}


id: FYPO:0007355
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the cell contains more Smp foci than normal.","definition_xrefs":["PomBase:mah","PMID:31811152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype","termid":"FYPO:0004638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased number of Smp foci","synonyms":[{"name":"increased number of Sme2 foci","type":"narrow"},{"name":"increased number of Smp dots","type":"exact"}],"termid":"FYPO:0007355"}


id: PBO:0048188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GABA type A receptor associated protein like 3 pseudogene","termid":"PBO:0048188"}


id: PBO:0076255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SV2C antisense RNA 1","termid":"PBO:0076255"}


id: GO:0048337
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mesoderm cell fate specification.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell fate specification","termid":"GO:0042660"},{"relation_name":"is_a","term_name":"regulation of mesodermal cell fate specification","termid":"GO:0042661"},{"relation_name":"is_a","term_name":"positive regulation of mesodermal cell differentiation","termid":"GO:1905772"},{"relation_name":"positively_regulates","term_name":"mesodermal cell fate specification","termid":"GO:0007501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mesodermal cell fate specification","synonyms":[{"name":"activation of mesodermal cell fate specification","type":"narrow"},{"name":"stimulation of mesodermal cell fate specification","type":"narrow"},{"name":"up regulation of mesodermal cell fate specification","type":"exact"},{"name":"up-regulation of mesodermal cell fate specification","type":"exact"},{"name":"upregulation of mesodermal cell fate specification","type":"exact"}],"termid":"GO:0048337"}


id: PR:O94410
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug163 gene.","definition_xrefs":["UniProtKB:O94410","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 163 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1620.03","synonyms":[{"name":"Spom972h-mug163","type":"exact"}],"termid":"PR:O94410"}


id: GO:0008873
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-gluconate + NADP+ = 2-dehydro-D-gluconate + NADPH + H+.","definition_xrefs":["EC:1.1.1.215"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gluconate dehydrogenase activity","termid":"GO:0008875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"gluconate 2-dehydrogenase activity","secondary_identifiers":["MetaCyc:1.1.1.215-RXN","RHEA:16653"],"synonyms":[{"name":"2-keto-D-gluconate reductase activity","type":"related"},{"name":"2-ketogluconate reductase activity","type":"related"}],"termid":"GO:0008873"}


id: PBO:0034526
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_mitotic_recombination_at_hotspot","termid":"PBO:0034526"}


id: PBO:0048949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamic-oxaloacetic transaminase 2","termid":"PBO:0048949"}


id: GO:1900809
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of fumigaclavine C, a fungal ergot alkaloid.","definition_xrefs":["PMID:26972831","GOC:di","PMID:23435153","GOC:TermGenie","PMID:15933009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ergot alkaloid biosynthetic process","termid":"GO:0035837"},{"relation_name":"is_a","term_name":"acetate ester biosynthetic process","termid":"GO:1900620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"fumigaclavine C biosynthetic process","secondary_identifiers":["GO:1900807"],"synonyms":[{"name":"fumigaclavine C anabolism","type":"exact"},{"name":"fumigaclavine C biosynthesis","type":"exact"},{"name":"fumigaclavine C formation","type":"exact"},{"name":"fumigaclavine C metabolic process","type":"broad"},{"name":"fumigaclavine C metabolism","type":"broad"},{"name":"fumigaclavine C synthesis","type":"exact"}],"termid":"GO:1900809"}


id: MONDO:0002066
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A usually benign tumor arising from the breast. It is characterized by the proliferation of cells with myoepithelial differentiation around spaces which are lined by epithelial cells. Rarely, the epithelial and/or myoepithelial cells may undergo malignant transformation. Cases with malignant transformation may follow an aggressive clinical course, including recurrences and local and distant metastases.","definition_xrefs":["NCIT:C6899"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast myoepithelial tumor","termid":"MONDO:0002483"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast adenomyoepithelioma","secondary_identifiers":["MEDGEN:267278","DOID:1642","ICDO:8983/0","ONCOTREE:BRAME","UMLS:C1510795"],"synonyms":[{"name":"BRAME","type":"related"},{"name":"adenomyoepithelioma of the breast","type":"exact"},{"name":"breast adenomyoepithelioma","type":"exact"},{"name":"breast adenomyoepithelioma with malignant change","type":"exact"},{"name":"malignant adenomyoepithelioma of breast","type":"exact"}],"termid":"MONDO:0002066","xrefs":{"Monarch":{"xref_id":"0002066"}}}


id: PATO:0001178
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A resistance quality inhering in a bearer by virtue of the bearer's resistance to a stimulus.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"resistance to","termid":"PATO:0001046"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"resistant to","synonyms":[{"name":"resistant","type":"exact"}],"termid":"PATO:0001178"}


id: MONDO:0019869
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mosaic trisomy 22 isa chromosome disorder in which chromosome 22 is present three times, instead of the usual two times, in some cells of the body. The range and severity of the disorder can vary widely. Some of the features that have been associated with this conditioninclude growth delays,cognitive deficiencies, unequal developmentof the two sides of the body (hemidystrophy), webbing of the neck, abnormal deviation of the elbows when extended (cubitus valgus), multiple pigmented moles or birthmarks, distinctive malformations of the head and face, and other physical abnormalities. A number of cases of children with mosaic trisomy 22 and normal growth and development have also been described.","direct_ancestors":[{"relation_name":"is_a","term_name":"trisomy 22","termid":"MONDO:0022759"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mosaic trisomy 22","secondary_identifiers":["Orphanet:96068","UMLS:C2931326","GARD:6085","MEDGEN:419045","MESH:C536796","SCTID:764625002","NORD:949"],"synonyms":[{"name":"Mosaic trisomy chromosome 22","type":"related"},{"name":"Mosaic trisomy type 22","type":"exact"},{"name":"trisomy 22 mosaicism","type":"related"}],"termid":"MONDO:0019869","xrefs":{"Monarch":{"xref_id":"0019869"}}}


id: MONDO:0010169
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Usher syndrome in which the cause of the disease is a mutation in the USH2A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Usher syndrome type 2","termid":"MONDO:0016484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Usher syndrome type 2A","secondary_identifiers":["OMIM:276901","DOID:0110838","MEDGEN:338513","ICD10CM:H35.5","GARD:15241","MESH:C536490","UMLS:C1848634"],"synonyms":[{"name":"US2","type":"related"},{"name":"USH2A","type":"exact"},{"name":"USH2A Usher syndrome","type":"exact"},{"name":"USHER syndrome, type IIA","type":"related"},{"name":"Usher syndrome caused by mutation in USH2A","type":"exact"},{"name":"Usher syndrome type 2A","type":"exact"},{"name":"Usher syndrome type IIA","type":"exact"},{"name":"Usher syndrome, type 2A","type":"related"},{"name":"retinal disease in usher syndrome type IIA, modifier of","type":"exact"}],"termid":"MONDO:0010169","xrefs":{"Monarch":{"xref_id":"0010169"}}}


id: PBO:0066809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 108","termid":"PBO:0066809"}


id: PBO:0080210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vestigial like family member 4","termid":"PBO:0080210"}


id: MONDO:0012301
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare mitochondrial DNA depletion syndrome characterized by muscle weakness, and progressive, generalized hypotonia due to depletion of mtDNA in skeletal muscles. Clinical progression ranges from rapid and early fatal course due to respiratory failure, to slowly progressive myopathy over the course of childhood or even early adulthood.","definition_xrefs":["Orphanet:254875"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial DNA depletion syndrome","termid":"MONDO:0018158"},{"relation_name":"is_a","term_name":"inborn disorder of pyrimidine metabolism","termid":"MONDO:0019238"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0019254"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066","MONDO:0019254"],"is_obsolete":false,"name":"mitochondrial DNA depletion syndrome, myopathic form","secondary_identifiers":["SCTID:703527003","MESH:C563698","DOID:0080120","GARD:17228","MEDGEN:461100","OMIM:609560","UMLS:C3149750","ICD9:359.89","icd11.foundation:294556832"],"synonyms":[{"name":"MTDPS2","type":"related"},{"name":"mitochondrial DNA depletion myopathy, Tk2-related","type":"related"},{"name":"mitochondrial DNA depletion syndrome 2","type":"related"},{"name":"mitochondrial DNA depletion syndrome 2 (myopathic type)","type":"related"},{"name":"mitochondrial DNA depletion syndrome type 2","type":"exact"},{"name":"mtDNA depletion syndrome, myopathic form","type":"exact"},{"name":"thymidine kinase 2 deficiency","type":"broad"}],"termid":"MONDO:0012301","xrefs":{"Monarch":{"xref_id":"0012301"}}}


id: PBO:0041498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 12 open reading frame 60","termid":"PBO:0041498"}


id: MONDO:0012195
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Distal arthrogryposis type 4 is an inherited developmental defect syndrome characterized by multiple congenital contractures of limbs, without primary neurologic and/or muscle disease that affects limb function, and a mild to severe scoliosis. Intelligence is normal.","definition_xrefs":["Orphanet:65720"],"direct_ancestors":[{"relation_name":"is_a","term_name":"distal arthrogryposis","termid":"MONDO:0019942"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arthrogryposis-severe scoliosis syndrome","secondary_identifiers":["MEDGEN:373169","MESH:C563791","OMIM:609128","GARD:16672","SCTID:715575001","UMLS:C1836756","DOID:0111610"],"synonyms":[{"name":"DA4","type":"related"},{"name":"arthrogryposis with Severe scoliosis","type":"related"},{"name":"arthrogryposis, distal, type 2D","type":"related"},{"name":"arthrogryposis, distal, type 4","type":"related"},{"name":"distal arthrogryposis type 4","type":"exact"},{"name":"distal arthrogryposis type IID","type":"exact"}],"termid":"MONDO:0012195","xrefs":{"Monarch":{"xref_id":"0012195"}}}


id: PBO:0000414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase regulatory subunit Pab1","termid":"PBO:0000414"}


id: PBO:0044545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DAP divergent transcript","termid":"PBO:0044545"}


id: MONDO:0028226
data:
  {"annotated_genes":["SJAG_03889"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86802],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014118"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"severe congenital neutropenia","termid":"MONDO:0018542"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03889":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive severe congenital neutropenia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:21834","NCIT:C176624","MEDGEN:1781858","Orphanet:439849","UMLS:C5447331"],"termid":"MONDO:0028226","terms_by_termid":{"MONDO:0014118":null},"xrefs":{"Monarch":{"xref_id":"0028226"}}}


id: GO:0038158
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of the cytokine granulocyte colony-stimulating factor (G-CSF) to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription. G-CSF binds to the receptor (CSF3R).","definition_xrefs":["GOC:nhn","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"granulocyte colony-stimulating factor signaling pathway","synonyms":[{"name":"CSF3 signaling pathway","type":"exact"},{"name":"G-CSF receptor signaling pathway","type":"exact"},{"name":"G-CSF signaling pathway","type":"exact"},{"name":"granulocyte colony-stimulating factor receptor signaling pathway","type":"exact"},{"name":"granulocyte colony-stimulating factor signalling pathway","type":"related"}],"termid":"GO:0038158"}


id: MONDO:0033533
data:
  {"annotated_genes":["SJAG_05218"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87150],"is_not":false,"summary":null,"term":"MONDO:0033533"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"combined oxidative phosphorylation deficiency","termid":"MONDO:0000732"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05218":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"combined oxidative phosphorylation deficiency 45","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5436461","MEDGEN:1731010","OMIM:618951","DOID:0112113"],"synonyms":[{"name":"COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 45","type":"related"},{"name":"COXPD45","type":"related"}],"termid":"MONDO:0033533","terms_by_termid":{"MONDO:0033533":null},"xrefs":{"Monarch":{"xref_id":"0033533"}}}


id: PBO:0044822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 109E (pseudogene)","termid":"PBO:0044822"}


id: GO:0050630
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (E)-isoeugenol + S-adenosyl-L-methionine = (E)-isomethyleugenol + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:17081"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016741"],"is_obsolete":false,"name":"(iso)eugenol O-methyltransferase activity","secondary_identifiers":["EC:2.1.1.146","MetaCyc:2.1.1.146-RXN"],"synonyms":[{"name":"S-adenosyl-L-methionine:isoeugenol O-methyltransferase activity","type":"related"},{"name":"isoeugenol O-methyltransferase activity","type":"exact"}],"termid":"GO:0050630"}


id: PBO:0002756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AAA family ATPase Rvb1","termid":"PBO:0002756"}


id: PBO:0003133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argininosuccinate lyase","termid":"PBO:0003133"}


id: GO:0031887
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a lipid droplet along a microtubule, mediated by motor proteins.","definition_xrefs":["PMID:9491895"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle transport along microtubule","termid":"GO:0072384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"lipid droplet transport along microtubule","synonyms":[{"name":"adiposome transport along microtubule","type":"exact"},{"name":"lipid body transport along microtubule","type":"exact"},{"name":"lipid particle transport along microtubule","type":"exact"}],"termid":"GO:0031887"}


id: PBO:0054053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1395","termid":"PBO:0054053"}


id: PBO:0011167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamideformyltransferase","termid":"PBO:0011167"}


id: GO:0099134
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Development of a sorocarp formed by aggregation of cells with different genotypes.","definition_xrefs":["PMID:18272966"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sorocarp development","termid":"GO:0030587"},{"relation_name":"is_a","term_name":"chimeric non-reproductive fruiting body development","termid":"GO:0099136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chimeric sorocarp development","termid":"GO:0099134"}


id: PBO:0056362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase 6","termid":"PBO:0056362"}


id: PBO:0030905
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_during_vegetative_growth","termid":"PBO:0030905"}


id: PBO:0087602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the CBF3 complex; F-box protein of the leucine-rich-repeat family; required for assembly of the complex; CBF3 binds to the CDE III element of centromeres, bending the DNA upon binding, and may be involved in sister chromatid cohesion during mitosis","termid":"PBO:0087602"}


id: MONDO:0009468
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Idiopathic intracranial hypertension is a neurological disorder characterized by isolated increased intracranial pressure manifesting with recurrent and persistent headaches, nausea, vomiting, progressive and transient obstruction of the visual field, papilledema. Visual loss can be irreversible.","definition_xrefs":["Orphanet:238624"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracranial hypertension","termid":"MONDO:0006810"},{"relation_name":"is_a","term_name":"cerebrovascular disorder","termid":"MONDO:0011057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudotumor cerebri","secondary_identifiers":["NORD:1294","ICD9:348.2","GARD:4561","OMIM:243200","SCTID:68267002","ICD10CM:G93.2","MEDGEN:18732","NCIT:C85035","UMLS:C0033845","DOID:11459","MESH:D011559","EFO:1001132","MedDRA:10037149"],"synonyms":[{"name":"IIH","type":"exact"},{"name":"Idiopathic Intracranial Hypertension","type":"exact"},{"name":"benign intracran. hypt.","type":"exact"},{"name":"benign intracranial hypertension","type":"exact"},{"name":"idiopathic intracranial hypertension","type":"exact"},{"name":"intracranial hypertension, idiopathic","type":"related"},{"name":"pseudotumor cerebri","type":"exact"}],"termid":"MONDO:0009468","xrefs":{"Monarch":{"xref_id":"0009468"}}}


id: PBO:0004006
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.5.1.12","termid":"PBO:0004006"}


id: PBO:0088533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L7a/L8","termid":"PBO:0088533"}


id: PBO:0001723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin Nup132","termid":"PBO:0001723"}


id: PBO:0014303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMR domain protein, possibly involved in DNA repair and neddylation","termid":"PBO:0014303"}


id: GO:1990514
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An RNA interference where the silencing signal spreads 5' along the target mRNA, outside of the initial target sequence. Typically involves the formation of secondary siRNAs formed when the initial mRNA target sequence functions as a template for 5' to 3' synthesis of new dsRNA.","definition_xrefs":["PMID:24369430","GOC:pf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transitive RNA interference","termid":"GO:0036453"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"5' transitive RNA interference","termid":"GO:1990514"}


id: PBO:0000861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial pyruvate dehydrogenase (lipoamide) phosphatase (predicted)","termid":"PBO:0000861"}


id: GO:0043949
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process which modulates the frequency, rate or extent of cAMP-mediated signaling.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular signal transduction","termid":"GO:1902531"},{"relation_name":"regulates","term_name":"cAMP-mediated signaling","termid":"GO:0019933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of cAMP-mediated signaling","synonyms":[{"name":"regulation of cAMP-mediated signalling","type":"exact"}],"termid":"GO:0043949"}


id: MONDO:0017367
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete kindler syndrome (obsolete MONDO:0017367)","termid":"MONDO:0017367","xrefs":{"Monarch":{"xref_id":"0017367"}}}


id: PBO:0045316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxynucleotidyltransferase terminal interacting protein 1","termid":"PBO:0045316"}


id: GO:0160236
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5,10-methylenetetrahydrofolate + taurine + GTP + H2O + uridine34 in tRNA + A = 7,8-dihydrofolate + GDP + phosphate + 5-taurinomethyluridine34 in tRNA + H+ + AH2.","definition_xrefs":["RHEA:83279","PMID:29390138","PMID:33619562"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity","termid":"GO:0016740"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0140098","GO:0140101","GO:0003824"],"is_obsolete":false,"name":"tRNA 5-taurinomethyluridine synthase activity","secondary_identifiers":["MetaCyc:RXN-16822"],"termid":"GO:0160236"}


id: GO:0120537
data:
  {"annotated_genes":["SJAG_04642"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[116732],"is_not":false,"summary":null,"term":"GO:0120537"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 3-demethylubiquinone + S-adenosyl-L-methionine = a ubiquinone + S-adenosyl-L-homocysteine.","definition_xrefs":["PMID:38425362","RHEA:81215"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04642":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"3-demethylubiquinone 3-O-methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0120537","terms_by_termid":{"GO:0120537":null}}


id: PR:Q9UT51
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- csn3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UT51"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COP9 signalosome complex subunit 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC222.16c","synonyms":[{"name":"CSN complex subunit 3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SGN3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-csn3","type":"exact"}],"termid":"PR:Q9UT51"}


id: GO:0005136
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interleukin-4 receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"},{"relation_name":"is_a","term_name":"growth factor receptor binding","termid":"GO:0070851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"interleukin-4 receptor binding","synonyms":[{"name":"IL-4","type":"narrow"},{"name":"interleukin-4 receptor ligand","type":"narrow"}],"termid":"GO:0005136"}


id: PBO:0061082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NKX2-1 antisense RNA 1","termid":"PBO:0061082"}


id: GO:1900514
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of starch utilization system complex assembly.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"is_a","term_name":"regulation of starch utilization system complex assembly","termid":"GO:1900512"},{"relation_name":"positively_regulates","term_name":"starch utilization system complex assembly","termid":"GO:0044574"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of starch utilization system complex assembly","synonyms":[{"name":"activation of SUS complex assembly","type":"exact"},{"name":"activation of assembly of starch utilization system complex","type":"exact"},{"name":"activation of starch utilization system complex assembly","type":"narrow"},{"name":"positive regulation of SUS complex assembly","type":"exact"},{"name":"positive regulation of assembly of starch utilization system complex","type":"exact"},{"name":"up regulation of SUS complex assembly","type":"exact"},{"name":"up regulation of assembly of starch utilization system complex","type":"exact"},{"name":"up regulation of starch utilization system complex assembly","type":"exact"},{"name":"up-regulation of SUS complex assembly","type":"exact"},{"name":"up-regulation of assembly of starch utilization system complex","type":"exact"},{"name":"up-regulation of starch utilization system complex assembly","type":"exact"},{"name":"upregulation of SUS complex assembly","type":"exact"},{"name":"upregulation of assembly of starch utilization system complex","type":"exact"},{"name":"upregulation of starch utilization system complex assembly","type":"exact"}],"termid":"GO:1900514"}


id: FYPO:0004104
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is inviable, and shaped in the form of a sphere.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"spherical vegetative cell","termid":"FYPO:0000129"},{"relation_name":"is_a","term_name":"spherical vegetative cell","termid":"FYPO:0000129"},{"relation_name":"is_a","term_name":"inviable spheroid vegetative cell","termid":"FYPO:0002482"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001985","FYPO:0001320","FYPO:0000005","FYPO:0000002"],"is_obsolete":false,"name":"inviable spherical vegetative cell","synonyms":[{"name":"inviable spherical cell","type":"exact"},{"name":"inviable spherical cell during vegetative growth","type":"exact"},{"name":"inviable spherical vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal; spherical vegetative cell","type":"exact"},{"name":"spherical inviable cell","type":"exact"}],"termid":"FYPO:0004104"}


id: PBO:0005521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal recognition particle subunit Srp54","termid":"PBO:0005521"}


id: MONDO:0013835
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any muscular dystrophy-dystroglycanopathy, type A in which the cause of the disease is a mutation in the ISPD gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy-dystroglycanopathy, type A","termid":"MONDO:0000171"},{"relation_name":"is_a","term_name":"myopathy caused by variation in CRPPA","termid":"MONDO:0100530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005336","MONDO:0024322","MONDO:0002320"],"is_obsolete":false,"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 7","secondary_identifiers":["MEDGEN:766244","GARD:15829","OMIM:614643","UMLS:C3553330","DOID:0111234"],"synonyms":[{"name":"ISPD muscular dystrophy-dystroglycanopathy, type A","type":"exact"},{"name":"MDDGA7","type":"related"},{"name":"Walker-Warburg syndrome or muscle-eye-brain disease, ISPD-related","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 7","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy, type A caused by mutation in ISPD","type":"exact"}],"termid":"MONDO:0013835","xrefs":{"Monarch":{"xref_id":"0013835"}}}


id: MONDO:0018864
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Kikuchi-Fujimoto disease (KFD) is a benign and self-limited disorder, characterized by regional cervical lymphadenopathy with tenderness, usually accompanied with mild fever and night sweats. Less frequent symptoms include weight loss, nausea, vomiting, sore throat.","definition_xrefs":["Orphanet:50918"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphadenitis","termid":"MONDO:0002052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"Kikuchi-Fujimoto disease","secondary_identifiers":["SCTID:127217009","GARD:6834","NCIT:C71719","UMLS:C0398367","MEDGEN:97979","MESH:D020042"],"synonyms":[{"name":"Kikuchi disease","type":"exact"},{"name":"Kikuchi necrotizing lymphadenitis","type":"related"},{"name":"Kikuchi's disease","type":"related"},{"name":"Kikuchi-Fujimoto's disease","type":"related"},{"name":"histiocytic necrotising lymphadenitis","type":"related"},{"name":"histiocytic necrotizing lymphadenitis","type":"exact"},{"name":"nosocomial Kikuchi's disease","type":"related"}],"termid":"MONDO:0018864","xrefs":{"Monarch":{"xref_id":"0018864"}}}


id: MONDO:0014146
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal dominant hypocalcemia disease that has material basis in heterozygous mutation in the GNA11 gene on chromosome 19p13.","definition_xrefs":["DOID:0090108"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant hypocalcemia","termid":"MONDO:0018543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0000426"],"is_obsolete":false,"name":"autosomal dominant hypocalcemia 2","secondary_identifiers":["GARD:15951","OMIM:615361","MEDGEN:815573","UMLS:C3809243"],"synonyms":[{"name":"HYPOC2","type":"exact"},{"name":"autosomal dominant hypocalcemia type 2","type":"exact"},{"name":"hypocalcemia, autosomal dominant 2","type":"related"},{"name":"hypocalcemia, autosomal dominant type 2","type":"exact"}],"termid":"MONDO:0014146","xrefs":{"Monarch":{"xref_id":"0014146"}}}


id: PR:O42926
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vps1302 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42926"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting-associated protein 13b (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16C6.02c","synonyms":[{"name":"Spom972h-vps1302","type":"exact"}],"termid":"PR:O42926"}


id: MONDO:0014198
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any mitochondrial DNA depletion syndrome in which the cause of the disease is a mutation in the FBXL4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial DNA depletion syndrome, encephalomyopathic form","termid":"MONDO:0016796"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial DNA depletion syndrome 13","secondary_identifiers":["MEDGEN:815922","NCIT:C172095","DOID:0080131","Orphanet:369897","SCTID:765403009","GARD:13298","UMLS:C3809592","OMIM:615471"],"synonyms":[{"name":"BXL4-related early-onset mitochondrial encephalopathy","type":"related"},{"name":"FBXL4 deficiency","type":"related"},{"name":"FBXL4 mitochondrial DNA depletion syndrome","type":"exact"},{"name":"FBXL4-related encephalomyopathic mitochondrial DNA depletion syndrome","type":"related"},{"name":"MTDPS13","type":"related"},{"name":"encephalomyopathic mitochondrial DNA depletion syndrome-13","type":"related"},{"name":"mitochondrial DNA depletion syndrome 13 (encephalomyopathic type)","type":"related"},{"name":"mitochondrial DNA depletion syndrome caused by mutation in FBXL4","type":"exact"},{"name":"mitochondrial DNA depletion syndrome type 13","type":"exact"},{"name":"mitochondrial DNA depletion syndrome, encephalomyopathic form with variable craniofacial anomalies","type":"related"},{"name":"mtDNA depletion syndrome, encephalomyopathic form with variable craniofacial anomalies","type":"exact"}],"termid":"MONDO:0014198","xrefs":{"Monarch":{"xref_id":"0014198"}}}


id: GO:0160265
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a alpha-D-glucose residue from UDP-alpha-D-glucose to the fucose residue of a fucosylated protein acceptor.","definition_xrefs":["PMID:16899492"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"O-fucosylpeptide 3-beta-glucosyltransferase activity","termid":"GO:0160265"}


id: PBO:0000908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-directed RNA polymerase Rdp1","termid":"PBO:0000908"}


id: GO:0018961
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving pentachlorophenol, a chlorinated insecticide and fungicide used primarily to protect timber from fungal rot and wood boring insects. Pentachlorophenol is significantly toxic to mammals, plants, and many microorganisms.","definition_xrefs":["UM-BBD_pathwayID:pcp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"},{"relation_name":"is_a","term_name":"organohalogen metabolic process","termid":"GO:0090345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pentachlorophenol metabolic process","synonyms":[{"name":"PCP metabolic process","type":"exact"},{"name":"PCP metabolism","type":"exact"},{"name":"pentachlorophenol metabolism","type":"exact"}],"termid":"GO:0018961"}


id: MONDO:0002614
data:
  {"annotated_genes":["SJAG_02763"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87675],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012316"}]},"cv_name":"mondo","definition":"Inflammation of the bone.","definition_xrefs":["MESH:D010000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone disorder","termid":"MONDO:0005381"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02763":null},"genotype_count":0,"is_obsolete":false,"name":"bone inflammation disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:3342","SCTID:274144001","MEDGEN:10492","UMLS:C0029400"],"synonyms":[{"name":"bone inflammatory disease","type":"exact"},{"name":"inflammatory disorder of bone","type":"exact"},{"name":"osteitis","type":"exact"}],"termid":"MONDO:0002614","terms_by_termid":{"MONDO:0012316":null},"xrefs":{"Monarch":{"xref_id":"0002614"}}}


id: MONDO:0001617
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition characterized by sudden, temporary, usually short-lived memory loss, not associated with a neurologic disorder. Affected individuals lose memory function for recent events and have a decreased ability to retain new information. It is usually a solitary event.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amnestic disorder","termid":"MONDO:0001152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0002039"],"is_obsolete":false,"name":"transient global amnesia","secondary_identifiers":["HP:0010534","MESH:D020236","UMLS:C0338591","ICD10CM:G45.4","icd11.foundation:1524600518","ICD9:437.7","NCIT:C85198","DOID:13027","MEDGEN:83275"],"synonyms":[{"name":"transient global amnesia","type":"exact"},{"name":"transient global amnesia (disease)","type":"exact"}],"termid":"MONDO:0001617","xrefs":{"Monarch":{"xref_id":"0001617"}}}


id: PBO:0089189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multifunctional proteasome assembly, lid subcomplex subunit Rpn15/Dss1","termid":"PBO:0089189"}


id: PBO:0089957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase, human CARNMT1 ortholog","termid":"PBO:0089957"}


id: PBO:0052311
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIAA0586","termid":"PBO:0052311"}


id: PBO:0088768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uridine ribohydrolase Urh2","termid":"PBO:0088768"}


id: PBO:0086125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for function of the Sit4p protein phosphatase; forms a complex with Sit4p; member of a family of similar proteins including Sap4p, Sap185p, and Sap190p; protein abundance increases in response to DNA replication stress; SAP155 has a paralog, SAP4, that arose from the whole genome duplication","termid":"PBO:0086125"}


id: MONDO:0030930
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with or without early-onset generalized epilepsy","secondary_identifiers":["OMIM:619157","MEDGEN:1737097","GARD:18539","UMLS:C5436914"],"synonyms":[{"name":"NEDEGE","type":"exact"}],"termid":"MONDO:0030930","xrefs":{"Monarch":{"xref_id":"0030930"}}}


id: MONDO:0016194
data:
  {"annotated_genes":["SJAG_03145","SJAG_03025","SJAG_03379","SJAG_04887"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87072],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008070"},{"annotations":[86944],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012239"},{"annotations":[88516],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009725"},{"annotations":[87650],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012538"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"qualitative or quantitative protein defects in neuromuscular diseases","termid":"MONDO:0016139"}],"gene_count":4,"genes_by_uniquename":{"SJAG_03025":null,"SJAG_03145":null,"SJAG_03379":null,"SJAG_04887":null},"genotype_count":0,"is_obsolete":false,"name":"qualitative or quantitative defects of nebulin","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:209182","UMLS:C5680844","GARD:20433","MEDGEN:1842429"],"termid":"MONDO:0016194","terms_by_termid":{"MONDO:0008070":null,"MONDO:0009725":null,"MONDO:0012239":null,"MONDO:0012538":null},"xrefs":{"Monarch":{"xref_id":"0016194"}}}


id: PBO:0034622
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_transcription_from_CRE_promoter_during_cellular_response_to_miconazole","termid":"PBO:0034622"}


id: PR:Q9P6I9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cha4 gene.","definition_xrefs":["UniProtKB:Q9P6I9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C1683.13c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1683.13c","synonyms":[{"name":"Spom972h-cha4","type":"exact"}],"termid":"PR:Q9P6I9"}


id: PBO:0001939
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tip Elongation Aberrant","termid":"PBO:0001939"}


id: MONDO:0049222
data:
  {"annotated_genes":["SJAG_05326"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87708],"is_not":false,"summary":null,"term":"MONDO:0049222"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic X-linked intellectual disability","termid":"MONDO:0019181"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05326":null},"genotype_count":0,"is_obsolete":false,"name":"intellectual disability, X-linked 107","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4692652","OMIM:301013","DOID:0112054","MEDGEN:1639885","GARD:22698"],"synonyms":[{"name":"MRX107","type":"related"},{"name":"intellectual developmental disorder, X-linked 107","type":"exact"},{"name":"intellectual disability, X-linked 107","type":"exact"},{"name":"mental retardation, X-linked 107","type":"related"}],"termid":"MONDO:0049222","terms_by_termid":{"MONDO:0049222":null},"xrefs":{"Monarch":{"xref_id":"0049222"}}}


id: PBO:0063971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 5","termid":"PBO:0063971"}


id: MONDO:0005572
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polycythemia resulting from hypoxia.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acquired secondary polycythemia","termid":"MONDO:0016541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"polycythemia due to hypoxia","secondary_identifiers":["NCIT:C27312","MEDGEN:163546","DOID:2835","UMLS:C0856818"],"termid":"MONDO:0005572","xrefs":{"Monarch":{"xref_id":"0005572"}}}


id: PBO:0030186
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_mitochondrial_translation","termid":"PBO:0030186"}


id: MONDO:0012705
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial mesial temporal lobe epilepsy","termid":"MONDO:0800493"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"familial temporal lobe epilepsy 3","secondary_identifiers":["DOID:0060750","GARD:18279","MEDGEN:368898","UMLS:C1968848","OMIM:611630","MESH:C566903"],"synonyms":[{"name":"ETL3","type":"exact"},{"name":"FMTLE","type":"broad"},{"name":"epilepsy, familial mesial temporal lobe","type":"related"},{"name":"epilepsy, familial temporal lobe, 3","type":"exact"},{"name":"familial mesial temporal lobe epilepsy","type":"broad"},{"name":"familial temporal lobe epilepsy type 3","type":"exact"}],"termid":"MONDO:0012705","xrefs":{"Monarch":{"xref_id":"0012705"}}}


id: PBO:0074806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 13 pseudogene 1","termid":"PBO:0074806"}


id: MONDO:0000041
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hyperphosphatasia with mental retardation syndrome (obsolete MONDO:0000041)","termid":"MONDO:0000041","xrefs":{"Monarch":{"xref_id":"0000041"}}}


id: PBO:0000571
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.1.1.62","termid":"PBO:0000571"}


id: PBO:0028474
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_NADH_dehydrogenase_(ubiquinone)_activity","termid":"PBO:0028474"}


id: PBO:0001909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"holo-[acyl-carrier-protein] synthase (predicted)","termid":"PBO:0001909"}


id: FYPO:0004913
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to nalidixic acid. Cells stop growing (and may die) at a concentration of nalidixic acid that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0002683","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to nalidixic acid","synonyms":[{"name":"hypersensitive to nalidixic acid","type":"exact"},{"name":"sensitive to nalidixic acid during mitotic cell cycle","type":"related"},{"name":"sensitive to nalidixic acid during vegetative growth","type":"exact"}],"termid":"FYPO:0004913"}


id: GO:0034522
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: cis-1,2-dihydroxy-1,2-dihydro-8-carboxynaphthalene = 1,2-dihydroxy-8-carboxynaphthalene + 2 H+ + 2 e-.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete cis-1,2-dihydroxy-1,2-dihydro-8-carboxynaphthalene dehydrogenase activity (obsolete GO:0034522)","termid":"GO:0034522"}


id: PBO:0056596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MDH1 pseudogene 1","termid":"PBO:0056596"}


id: PBO:0030826
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_lithium_ion","termid":"PBO:0030826"}


id: PBO:0053864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1139","termid":"PBO:0053864"}


id: PBO:0027024
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_L-aminoadipate-semialdehyde_dehydrogenase_activity","termid":"PBO:0027024"}


id: PBO:0049570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B histone pseudogene 7","termid":"PBO:0049570"}


id: PBO:0067107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 149, pseudogene","termid":"PBO:0067107"}


id: GO:0032810
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a sterol response element (SRE), a nonpalindromic sequence found in the promoters of genes involved in lipid metabolism.","definition_xrefs":["GOC:vk","PMID:11994399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II cis-regulatory region sequence-specific DNA binding","termid":"GO:0000978"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0000976"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0003674","GO:0000976","GO:0005488","GO:0003677"],"is_obsolete":false,"name":"sterol response element binding","synonyms":[{"name":"SRE binding","type":"exact"}],"termid":"GO:0032810"}


id: PBO:0047662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FKBP14 antisense RNA 1","termid":"PBO:0047662"}


id: GO:0007353
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete ventral/lateral system (obsolete GO:0007353)","synonyms":[{"name":"ventral/lateral system","type":"exact"}],"termid":"GO:0007353"}


id: FYPO:0007959
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of mitotic spindle elongation is increased during miotic prophase.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased rate of mitotic spindle elongation","termid":"FYPO:0007958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000054","FYPO:0001985","FYPO:0001320","FYPO:0000631","FYPO:0000337","FYPO:0000002","FYPO:0000641"],"is_obsolete":false,"name":"increased rate of mitotic spindle elongation during prophase","termid":"FYPO:0007959"}


id: PBO:0030458
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_nickel_import","termid":"PBO:0030458"}


id: PBO:0113409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Repressor of G1 transcription; binds to SCB binding factor (SBF) at SCB target promoters in early G1; WHI5 expression is repressed in M/early G phase; phosphorylation of Whi5p by G1 cyclin (Cln)/Cdc28p relieves repression and promoter binding by Whi5p, drives nuclear export, and contributes to both the determination of critical cell size at START and cell fate; dephosphorylated and re-imported into the nucleus post-START during the starvation response, reversing commitment","termid":"PBO:0113409"}


id: PATO:0001412
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's lacking distinct structure.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unstructured","termid":"PATO:0001412"}


id: PBO:0041080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRICK1 pseudogene 1","termid":"PBO:0041080"}


id: PBO:0046515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum lectin 1","termid":"PBO:0046515"}


id: GO:1905192
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of chloroplast fission.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:26862170"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle organization","termid":"GO:0033043"},{"relation_name":"regulates","term_name":"chloroplast fission","termid":"GO:0010020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of chloroplast fission","synonyms":[{"name":"regulation of chloroplast division","type":"exact"}],"termid":"GO:1905192"}


id: MONDO:0025389
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease of cattle caused by bacteria of the genus brucella leading to abortion in late pregnancy. brucella abortus is the primary infective agent.","definition_xrefs":["MESH:D002007"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cattle disease","termid":"MONDO:0024913"},{"relation_name":"is_a","term_name":"bacterial infectious disease, non-human animal","termid":"MONDO:0700050"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brucellosis, bovine","synonyms":[{"name":"Bangs disease","type":"related"},{"name":"Brucelloses, bovine","type":"related"},{"name":"bang disease","type":"related"},{"name":"bang's disease","type":"related"},{"name":"bovine Brucelloses","type":"related"},{"name":"bovine brucellosis","type":"related"},{"name":"disease, bang","type":"related"},{"name":"disease, bang's","type":"related"}],"termid":"MONDO:0025389","xrefs":{"Monarch":{"xref_id":"0025389"}}}


id: PBO:0065345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin like 2A pseudogene 2","termid":"PBO:0065345"}


id: GO:0098653
data:
  {"annotated_genes":["SJAG_01613","SJAG_02761","SJAG_03683","SJAG_00727","SJAG_02814","SJAG_02299","SJAG_00794","SJAG_02737","SJAG_04076","SJAG_03126","SJAG_03540","SJAG_05196","SJAG_01745","SJAG_02624","SJAG_01805"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113811],"is_not":false,"summary":null,"term":"GO:0098653"},{"annotations":[93154,118806,111809,104639,91408],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072766"},{"annotations":[117784,97129,70177,101034,102198,104255,66730,110983,95609],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990571"}]},"cv_name":"biological_process","definition":"The process by which centromeres/kinetochores become localized to clusters.","definition_xrefs":["GOC:dos","PMID:10761928","PMID:23283988","GOC:di","PMID:8486732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome localization","termid":"GO:0050000"},{"relation_name":"is_a","term_name":"centromere localization","termid":"GO:0072765"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00727":null,"SJAG_00794":null,"SJAG_01613":null,"SJAG_01745":null,"SJAG_01805":null,"SJAG_02299":null,"SJAG_02624":null,"SJAG_02737":null,"SJAG_02761":null,"SJAG_02814":null,"SJAG_03126":null,"SJAG_03540":null,"SJAG_03683":null,"SJAG_04076":null,"SJAG_05196":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"centromere clustering","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["GO:0098587"],"synonyms":[{"name":"kinetochore clustering","type":"exact"}],"termid":"GO:0098653","terms_by_termid":{"GO:0072766":null,"GO:0098653":null,"GO:1990571":null}}


id: GO:0031159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the size of the aggregate formed during sorocarp formation.","definition_xrefs":["GOC:pg","PMID:5002049","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of aggregate size involved in sorocarp development","termid":"GO:0031157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of aggregate size involved in sorocarp development","synonyms":[{"name":"activation of aggregate size","type":"narrow"},{"name":"stimulation of aggregate size","type":"narrow"},{"name":"up regulation of aggregate size","type":"exact"},{"name":"up-regulation of aggregate size","type":"exact"},{"name":"upregulation of aggregate size","type":"exact"}],"termid":"GO:0031159"}


id: MONDO:0015398
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hemifacial microsomia (obsolete MONDO:0015398)","termid":"MONDO:0015398","xrefs":{"Monarch":{"xref_id":"0015398"}}}


id: MOD:00423
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes one sodium atom for one hydrogen atom.","definition_xrefs":["Unimod:30","DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sodium containing modified residue","termid":"MOD:00747"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monosodium salt","synonyms":[{"name":"Cation:Na","type":"related"},{"name":"Na1Res","type":"exact"},{"name":"Sodium","type":"exact"},{"name":"Sodium adduct","type":"related"}],"termid":"MOD:00423"}


id: GO:2001228
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of response to gamma radiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"regulates","term_name":"response to gamma radiation","termid":"GO:0010332"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of response to gamma radiation","synonyms":[{"name":"regulation of response to gamma ray","type":"related"},{"name":"regulation of response to gamma-ray photon","type":"related"}],"termid":"GO:2001228"}


id: PBO:0056071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphocyte antigen 6 family member G5B","termid":"PBO:0056071"}


id: SO:0001777
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variant that has arisen after splitting of the embryo, resulting in the variant being found in only some of the tissues or cells of the body.","direct_ancestors":[{"relation_name":"is_a","term_name":"variant_origin","termid":"SO:0001762"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"somatic_variant","synonyms":[{"name":"somatic variant","type":"exact"}],"termid":"SO:0001777"}


id: MONDO:0012057
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"legionnaire disease, susceptibility to","secondary_identifiers":["MEDGEN:325276","UMLS:C1837872","OMIM:608556"],"synonyms":[{"name":"Legionella infection","type":"related"},{"name":"legionnaire disease, susceptibility to","type":"exact"},{"name":"legionnaire's disease","type":"related"},{"name":"susceptibility to legionnaire disease","type":"related"}],"termid":"MONDO:0012057","xrefs":{"Monarch":{"xref_id":"0012057"}}}


id: MONDO:0018283
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete primary qualitative or quantitative defects of alpha-dystroglycan (obsolete MONDO:0018283)","secondary_identifiers":["Orphanet:371040"],"synonyms":[{"name":"primary alpha-dystroglycanopathy","type":"exact"},{"name":"primary dystroglycanopathy","type":"exact"}],"termid":"MONDO:0018283","xrefs":{"Monarch":{"xref_id":"0018283"}}}


id: GO:0170005
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of cyclic nucleotide phosphodiesterase.","definition_xrefs":["PMID:6667031","PMID:6259174","PMID:6087882"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0098772","GO:0140677","GO:0003674","GO:0030234"],"is_obsolete":false,"name":"cyclic nucleotide phosphodiesterase activator activity","termid":"GO:0170005"}


id: GO:0031237
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of a plasma membrane consisting of gene products and protein complexes that penetrate the periplasmic side of the plasma membrane only, either directly or via some covalently attached hydrophobic anchor.","definition_xrefs":["GOC:mah","GOC:mtg_sensu"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of periplasmic side of plasma membrane (obsolete GO:0031237)","synonyms":[{"name":"intrinsic to external leaflet of plasma membrane, in periplasmic space","type":"exact"},{"name":"intrinsic to periplasmic side of plasma membrane","type":"exact"}],"termid":"GO:0031237"}


id: SO:0001373
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"1_methyl_3_3_amino_3_carboxypropyl_pseudouridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"one_methyl_three_three_amino_three_carboxypropyl_pseudouridine","secondary_identifiers":["RNAMOD:086"],"synonyms":[{"name":"1-methyl-3-(3-amino-3-carboxypropyl) pseudouridine","type":"exact"},{"name":"m1acp3Y","type":"exact"}],"termid":"SO:0001373"}


id: PBO:0076301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptic Ras GTPase activating protein 1","termid":"PBO:0076301"}


id: PBO:0072400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S27 pseudogene 5","termid":"PBO:0072400"}


id: GO:0033985
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the membranes of an acidocalcisome.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular organelle lumen","termid":"GO:0070013"},{"relation_name":"part_of","term_name":"acidocalcisome","termid":"GO:0020022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"acidocalcisome lumen","termid":"GO:0033985"}


id: PBO:0027447
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_okadaic_acid","termid":"PBO:0027447"}


id: GO:0036126
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A microtubule-based flagellum (or cilium) that is part of a sperm, a mature male germ cell that develops from a spermatid.","definition_xrefs":["GOC:cilia","GOC:sart","PMID:8441407"],"direct_ancestors":[{"relation_name":"is_a","term_name":"9+2 motile cilium","termid":"GO:0097729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"sperm flagellum","synonyms":[{"name":"sperm cilium","type":"exact"},{"name":"sperm tail","type":"exact"}],"termid":"GO:0036126"}


id: PBO:0065992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAI1 antisense RNA 1","termid":"PBO:0065992"}


id: FYPO:0000127
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_00364:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00364","name":"rad3delta","uniquename":"SJAG_00364:allele-1"},"SJAG_00429:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00429","name":"rad26delta","uniquename":"SJAG_00429:allele-1"},"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_01205:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01205","name":"crb2delta","uniquename":"SJAG_01205:allele-1"},"SJAG_01410:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01410","name":"rad51delta","uniquename":"SJAG_01410:allele-1"},"SJAG_01605:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01605","name":"rad9delta","uniquename":"SJAG_01605:allele-1"},"SJAG_01680:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01680","name":"chk1delta","uniquename":"SJAG_01680:allele-1"},"SJAG_01787:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01787","name":"pck1delta","uniquename":"SJAG_01787:allele-1"},"SJAG_02527:allele-1":{"allele_type":"disruption","description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene_uniquename":"SJAG_02527","name":"lig4::KanMX6","uniquename":"SJAG_02527:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_04287:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04287","name":"cds1delta","uniquename":"SJAG_04287:allele-1"},"SJAG_04312:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04312","name":"pka1delta","uniquename":"SJAG_04312:allele-1"},"SJAG_04551:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04551","name":"pmk1delta","uniquename":"SJAG_04551:allele-1"},"SJAG_04671:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04671","name":"mrc1delta","uniquename":"SJAG_04671:allele-1"},"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"},"SJAG_05207:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05207","name":"cmp7delta","uniquename":"SJAG_05207:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[121399],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000085"},{"annotations":[121396],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000088"}],"single_locus_phenotype":[{"annotations":[121139,121083,121154,121166],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000097"},{"annotations":[120997,121397,120998,121398,121403,121405,121404,120996],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000085"},{"annotations":[121119,121104],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000079"},{"annotations":[121082],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000087"},{"annotations":[121402,121400,121395,121394,121401],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000088"},{"annotations":[120986],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000106"},{"annotations":[121316,121317,121071,121072],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000107"},{"annotations":[121330],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000714"},{"annotations":[121084],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001214"},{"annotations":[121167],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000841"},{"annotations":[121114],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007522"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show decreased resistance to a chemical stimulus. Resistance to a chemical is measured by determining the maximum concentration of the chemical at which a population of cells grow and divide. Typically, cells are deemed sensitive to a chemical if they stop growing (and may die) at a concentration of the chemical that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vegetative cell population growth","termid":"FYPO:0001356"},{"relation_name":"is_a","term_name":"increased sensitivity to 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crb2delta","display_uniquename":"chk1delta__crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01680:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]},"cmp7delta":{"display_name":"cmp7delta","display_uniquename":"cmp7delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]}]},"crb2delta":{"display_name":"crb2delta","display_uniquename":"crb2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01205:allele-1","expression":"Null"}]}]},"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]},"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown":{"display_name":"lig4::KanMX6(RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}]},"mrc1delta":{"display_name":"mrc1delta","display_uniquename":"mrc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04671:allele-1","expression":"Null"}]}]},"pck1delta":{"display_name":"pck1delta","display_uniquename":"pck1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01787:allele-1","expression":"Null"}]}]},"pck2delta":{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]},"pka1delta":{"display_name":"pka1delta","display_uniquename":"pka1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04312:allele-1","expression":"Null"}]}]},"pmk1delta":{"display_name":"pmk1delta","display_uniquename":"pmk1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04551:allele-1","expression":"Null"}]}]},"rad26delta":{"display_name":"rad26delta","display_uniquename":"rad26delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00429:allele-1","expression":"Null"}]}]},"rad3delta":{"display_name":"rad3delta","display_uniquename":"rad3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00364:allele-1","expression":"Null"}]}]},"rad51delta":{"display_name":"rad51delta","display_uniquename":"rad51delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01410:allele-1","expression":"Null"}]}]},"rad9delta":{"display_name":"rad9delta","display_uniquename":"rad9delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01605:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0005447","FYPO:0000003","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_01680","SJAG_01205"],"name":"increased sensitivity to chemical during vegetative growth","references_by_uniquename":{"PMID:20368354":null,"PMID:23090706":null,"PMID:27678009":null,"PMID:31150379":null,"PMID:32243490":null,"PMID:32915139":null,"PMID:33791858":null,"PMID:34198697":null,"PMID:36058798":null,"PMID:37233261":null},"single_locus_annotated_genes":["SJAG_01680","SJAG_04551","SJAG_01605","SJAG_00364","SJAG_04312","SJAG_04671","SJAG_04287","SJAG_01410","SJAG_00266","SJAG_00429","SJAG_01787","SJAG_02592","SJAG_00610","SJAG_05207","SJAG_04697","SJAG_02527","SJAG_01205"],"single_locus_genotype_uniquenames":["crb2delta","mrc1delta","pck1delta","pmk1delta","rad51delta","rad26delta","cmp7delta","pck2delta","atf1delta","gms1delta","lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","sty1delta","cds1delta","chk1delta","rad9delta","rad3delta","pka1delta"],"synonyms":[{"name":"increased sensitivity to chemical during mitotic cell cycle","type":"related"},{"name":"resistance to chemicals: decreased during vegetative growth","type":"exact"}],"termid":"FYPO:0000127","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000314":null,"FYPO:0000079":null,"FYPO:0000085":null,"FYPO:0000087":null,"FYPO:0000088":null,"FYPO:0000097":null,"FYPO:0000106":null,"FYPO:0000107":null,"FYPO:0000714":null,"FYPO:0000841":null,"FYPO:0001214":null,"FYPO:0007522":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"FYPO_EXT:0000003":null}}


id: MONDO:0010050
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete spastic pseudosclerosis (obsolete MONDO:0010050)","secondary_identifiers":["MESH:C563024","OMIM:270900"],"synonyms":[{"name":"corticopallidodegeneration","type":"related"},{"name":"disseminated encephalomyelopathy","type":"related"},{"name":"spastic pseudosclerosis","type":"exact"}],"termid":"MONDO:0010050","xrefs":{"Monarch":{"xref_id":"0010050"}}}


id: MONDO:0017884
data:
  {"annotated_genes":["SJAG_01144"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87947],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0003789"}]},"cv_name":"mondo","definition":"A rare subtype of renal cell carcinoma, arising from the renal tubular epithelium and showing a papillary growth pattern, which typically manifests with hematuria, flank pain, palpable abdominal mass or nonspecific symptoms, such as fatigue, weight loss or fever. Symptoms related to metastatic spread, such as bone pain or persistent cough, are frequently associated since early diagnosis is not common. It is typically multifocal, bilateral, and in most cases sporadic, although different hereditary syndromes, such as Hereditary leiomyoma renal cell carcinoma, Birt-Hogg-DubC) syndrome and Tuberous sclerosis, may predispose to the development of papillary renal cell carcinoma.","definition_xrefs":["Orphanet:319298"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete inherited renal cancer-predisposing syndrome (obsolete MONDO:0017891)","termid":"MONDO:0017891"},{"relation_name":"is_a","term_name":"papillary adenocarcinoma","termid":"MONDO:0002512"},{"relation_name":"is_a","term_name":"renal cell adenocarcinoma","termid":"MONDO:0005549"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01144":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240","MONDO:0004992"],"is_obsolete":false,"name":"papillary renal cell carcinoma","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NCIT:C6975","SCTID:733608000","ONCOTREE:PRCC","GARD:9572","EFO:0000640","MEDGEN:266300","DOID:4465","UMLS:C1306837"],"synonyms":[{"name":"HPRCC","type":"exact"},{"name":"RCCP","type":"related"},{"name":"RCCP1","type":"related"},{"name":"chromophil RCC","type":"related"},{"name":"chromophil carcinoma of kidney","type":"exact"},{"name":"chromophil carcinoma of the kidney","type":"exact"},{"name":"chromophil renal cell carcinoma","type":"exact"},{"name":"papillary (chromophil) renal cell carcinoma","type":"exact"},{"name":"papillary kidney carcinoma","type":"exact"},{"name":"papillary renal carcinoma, malignant - (subtype)","type":"related"},{"name":"papillary renal cell adenocarcinoma","type":"exact"},{"name":"papillary renal cell cancer","type":"exact"},{"name":"papillary renal cell carcinoma","type":"exact"},{"name":"papillary renal cell carcinoma, bilateral - (subtype)","type":"related"},{"name":"papillary renal cell carcinoma, familial - (subtype)","type":"related"},{"name":"papillary renal cell carcinoma, multiple - (subtype)","type":"related"},{"name":"papillary renal cell carcinoma, sporadic - (subtype)","type":"related"},{"name":"renal adenocarcinoma","type":"related"},{"name":"renal cell carcinoma, papillary, 1","type":"related"},{"name":"renal cell carcinoma, papillary, type 1","type":"exact"},{"name":"sporadic papillary renal cell carcinoma","type":"exact"}],"termid":"MONDO:0017884","terms_by_termid":{"MONDO:0003789":null},"xrefs":{"Monarch":{"xref_id":"0017884"}}}


id: FYPO:0007899
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, localization of a protein to the actomyosin contractile ring is increased.","definition_xrefs":["PMID:34613787","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to actomyosin contractile ring","termid":"FYPO:0002560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000032","FYPO:0000631"],"is_obsolete":false,"name":"increased rate of protein localization to actomyosin contractile ring","synonyms":[{"name":"increased rate of protein localisation to actomyosin contractile ring","type":"exact"},{"name":"increased rate of protein localization to actomyosin contractile ring during vegetative growth","type":"exact"},{"name":"increased rate of protein localization to actomyosin contractile ring involved in mitotic cytokinesis","type":"exact"},{"name":"increased rate of protein localization to cytokinetic contractile ring","type":"exact"},{"name":"increased rate of protein localization to mitotic contractile ring","type":"exact"}],"termid":"FYPO:0007899"}


id: GO:0009129
data:
  {"annotated_genes":["SJAG_04713","SJAG_00694","SJAG_04627","SJAG_04709","SJAG_03708","SJAG_00444","SJAG_00964","SJAG_04487","SJAG_03164","SJAG_00533","SJAG_04354","SJAG_03771","SJAG_00197"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[62707,57334,59484,59858,61710],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044205"},{"annotations":[69603],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009224"},{"annotations":[81214,71649],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006231"},{"annotations":[71648,81237],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006226"},{"annotations":[69604,89272,93787,90266,94784],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044206"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving pyrimidine nucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate metabolic process","termid":"GO:0009123"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00197":null,"SJAG_00444":null,"SJAG_00533":null,"SJAG_00694":null,"SJAG_00964":null,"SJAG_03164":null,"SJAG_03708":null,"SJAG_03771":null,"SJAG_04354":null,"SJAG_04487":null,"SJAG_04627":null,"SJAG_04709":null,"SJAG_04713":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"pyrimidine nucleoside monophosphate metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"pyrimidine nucleoside monophosphate metabolism","type":"exact"}],"termid":"GO:0009129","terms_by_termid":{"GO:0006226":null,"GO:0006231":null,"GO:0009224":null,"GO:0044205":null,"GO:0044206":null}}


id: PBO:0066473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"riboflavin kinase","termid":"PBO:0066473"}


id: MONDO:0001624
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute form of sphenoid sinusitis.","definition_xrefs":["MONDO:patterns/acute"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sphenoid sinusitis","termid":"MONDO:0005964"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute sphenoidal sinusitis","secondary_identifiers":["SCTID:77919000","UMLS:C0155807","DOID:13046","MEDGEN:510089","ICD9:461.3","ICD10CM:J01.3","icd11.foundation:348880565"],"synonyms":[{"name":"acute sphenoid sinusitis","type":"exact"},{"name":"sphenoid sinusitis, acute","type":"exact"},{"name":"sphenoidal sinus -acute","type":"exact"}],"termid":"MONDO:0001624","xrefs":{"Monarch":{"xref_id":"0001624"}}}


id: PBO:0042179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin B1","termid":"PBO:0042179"}


id: MOD:01053
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-nitrophenylsulphenyl","synonyms":[{"name":"Nps","type":"exact"}],"termid":"MOD:01053"}


id: PR:O74748
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- trs8502 gene.","definition_xrefs":["UniProtKB:O74748","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transport protein particle subunit trs85-2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1734.07c","synonyms":[{"name":"Spom972h-trs8502","type":"exact"},{"name":"TRAPP subunit trs85-2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74748"}


id: GO:2000842
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of dehydroepiandrosterone secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of lipid transport","termid":"GO:0032370"},{"relation_name":"is_a","term_name":"positive regulation of hormone secretion","termid":"GO:0046887"},{"relation_name":"is_a","term_name":"regulation of dehydroepiandrosterone secretion","termid":"GO:2000840"},{"relation_name":"positively_regulates","term_name":"dehydroepiandrosterone secretion","termid":"GO:0035942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of dehydroepiandrosterone secretion","synonyms":[{"name":"positive regulation of 3beta-hydroxyandrost-5-en-17-one secretion","type":"exact"},{"name":"positive regulation of DHEA secretion","type":"exact"},{"name":"positive regulation of dehydroisoandrosterone secretion","type":"exact"}],"termid":"GO:2000842"}


id: PR:G2TRP4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC21B10.15 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRP4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C21B10.15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21B10.15","synonyms":[{"name":"Spom972h-SPBC21B10.15","type":"exact"}],"termid":"PR:G2TRP4"}


id: GO:0061992
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone, and dependent on ATP hydrolysis.","definition_xrefs":["PMID:18311152"],"gene_count":0,"genotype_count":0,"name":"obsolete ATP-dependent chaperone mediated protein folding (obsolete GO:0061992)","termid":"GO:0061992"}


id: PBO:0042646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain Y-linked 21 pseudogene","termid":"PBO:0042646"}


id: GO:2000970
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of detection of glucose.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"regulates","term_name":"detection of glucose","termid":"GO:0051594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of detection of glucose","synonyms":[{"name":"regulation of glucose detection","type":"exact"},{"name":"regulation of glucose perception","type":"related"},{"name":"regulation of glucose sensing","type":"related"}],"termid":"GO:2000970"}


id: PBO:0084236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Imidazoleglycerol-phosphate dehydratase; catalyzes the sixth step in histidine biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts; transcription is regulated by general amino acid control via Gcn4p","termid":"PBO:0084236"}


id: PBO:0061453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 5 group A member 1","termid":"PBO:0061453"}


id: PBO:0051588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 20","termid":"PBO:0051588"}


id: PBO:0017545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium ion transmembrane transporter (predicted)","termid":"PBO:0017545"}


id: GO:1990495
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An actin filament organization process that contributes to actomyosin contractile ring assembly during mitotic cytokinesis.","definition_xrefs":["PMID:8834798"],"gene_count":0,"genotype_count":0,"name":"obsolete actin filament organization involved in mitotic cytokinetic actomyosin contractile ring assembly (obsolete GO:1990495)","synonyms":[{"name":"actin filament organization involved in mitotic cytokinetic actomyosin contractile ring assembly","type":"exact"}],"termid":"GO:1990495"}


id: PR:O42844
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein kinase 33 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01695","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium/calmodulin-dependent protein kinase type II (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23A1.06c","secondary_identifiers":["UniProtKB:O42844"],"synonyms":[{"name":"CAM kinase II (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-STK33","type":"exact"}],"termid":"PR:O42844"}


id: MONDO:0004545
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant peripheral nerve sheath tumor occurring during adulthood.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant peripheral nerve sheath tumor","termid":"MONDO:0017827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"adult malignant schwannoma","secondary_identifiers":["MEDGEN:75845","DOID:8369","UMLS:C0278622","NCIT:C7814"],"synonyms":[{"name":"adult MPNST","type":"exact"},{"name":"adult malignant neoplasm of peripheral nerve sheath","type":"exact"},{"name":"adult malignant neoplasm of the peripheral nerve sheath","type":"exact"},{"name":"adult malignant neurilemmoma","type":"exact"},{"name":"adult malignant peripheral nerve sheath neoplasm","type":"exact"},{"name":"adult malignant peripheral nerve sheath tumor","type":"exact"},{"name":"adult malignant peripheral nerve sheath tumour","type":"exact"},{"name":"adult malignant schwannoma","type":"exact"},{"name":"adult malignant tumor of peripheral nerve sheath","type":"exact"},{"name":"adult malignant tumor of the peripheral nerve sheath","type":"exact"},{"name":"adult malignant tumour of peripheral nerve sheath","type":"exact"},{"name":"adult malignant tumour of the peripheral nerve sheath","type":"exact"},{"name":"malignant peripheral nerve sheath tumor","type":"broad"},{"name":"malignant peripheral nerve sheath tumour","type":"broad"}],"termid":"MONDO:0004545","xrefs":{"Monarch":{"xref_id":"0004545"}}}


id: MONDO:0008976
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondroitin-6-sulfaturia, defective cellular immunity, nephrotic syndrome","secondary_identifiers":["MEDGEN:349095","UMLS:C1859104","OMIM:215250","MESH:C565852"],"synonyms":[{"name":"chondroitin-6-Sulfaturia, defective cellular immunity, nephrotic syndrome","type":"exact"}],"termid":"MONDO:0008976","xrefs":{"Monarch":{"xref_id":"0008976"}}}


id: GO:0033290
data:
  {"annotated_genes":["SJAG_02164","SJAG_02390","SJAG_04891","SJAG_03147","SJAG_03629","SJAG_02628","SJAG_04900","SJAG_00662","SJAG_03472","SJAG_03732","SJAG_04981","SJAG_04744","SJAG_02376"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[59476,60164,60321,63231,64296,64706,64944,70264,71318,79365,97682,98662,100188],"is_not":false,"summary":null,"term":"GO:0033290"}]},"cv_name":"cellular_component","definition":"The protein-ribosome-tRNA complex that has just recognized the start codon of a capped mRNA. It is composed of the small ribosomal subunit, eukaryote initiation factors (eIF) eIF3 complex, eIF1, eIF1A, eIF2-GDP, eIF4 complex and initiatior-methionine-tRNA. Recognition of the start codon triggers downstream steps in the pathway, including eIF1 dissociation; Pi release from eIF2; and conversion to the closed, scanning-arrested conformation of the PIC.","definition_xrefs":["PMID:24319994","PMID:16510876","PMID:24499181","PMID:29735639","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytosolic translation preinitiation complex","termid":"GO:0070993"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00662":null,"SJAG_02164":null,"SJAG_02376":null,"SJAG_02390":null,"SJAG_02628":null,"SJAG_03147":null,"SJAG_03472":null,"SJAG_03629":null,"SJAG_03732":null,"SJAG_04744":null,"SJAG_04891":null,"SJAG_04900":null,"SJAG_04981":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"eukaryotic 48S preinitiation complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0016283"],"synonyms":[{"name":"eukaryotic 48S initiation complex","type":"related"},{"name":"eukaryotic 48S pre-initiation complex","type":"exact"}],"termid":"GO:0033290","terms_by_termid":{"GO:0033290":null}}


id: _global:has_exclusion_reason
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_exclusion_reason","termid":"_global:has_exclusion_reason","xrefs":{"Monarch":{"xref_id":"has_exclusion_reason"}}}


id: GO:1990677
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that promotes the biogenesis of mitochondrial F1Fo-ATP synthase by facilitating assembly of the peripheral stalk. Loss of INAC function causes dissociation of the F1-domain from the membrane-integral Fo-portion.","definition_xrefs":["GOC:bhm","PMID:24942160"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inner mitochondrial membrane protein complex","termid":"GO:0098800"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005739"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005739","GO:0005737"],"is_obsolete":false,"name":"mitochondrial inner membrane assembly complex","synonyms":[{"name":"INAC complex","type":"exact"},{"name":"inner membrane assembly complex","type":"broad"},{"name":"mitochondrion inner membrane assembly complex","type":"exact"}],"termid":"GO:1990677"}


id: PATO:0002070
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A molecular quality that arises from the molecular attraction exerted between two atoms or compounds.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular quality","termid":"PATO:0002182"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"affinity","termid":"PATO:0002070"}


id: GO:0046852
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of bone remodeling.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of tissue remodeling","termid":"GO:0034105"},{"relation_name":"is_a","term_name":"regulation of bone remodeling","termid":"GO:0046850"},{"relation_name":"positively_regulates","term_name":"bone remodeling","termid":"GO:0046849"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of bone remodeling","synonyms":[{"name":"activation of bone remodeling","type":"narrow"},{"name":"positive regulation of bone remodelling","type":"exact"},{"name":"stimulation of bone remodeling","type":"narrow"},{"name":"up regulation of bone remodeling","type":"exact"},{"name":"up-regulation of bone remodeling","type":"exact"},{"name":"upregulation of bone remodeling","type":"exact"}],"termid":"GO:0046852"}


id: GO:0006134
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete dihydrobiopterin reduction (obsolete GO:0006134)","synonyms":[{"name":"dihydrobiopterin reduction","type":"exact"}],"termid":"GO:0006134"}


id: PBO:0036412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPOUT domain containing methyltransferase, implicated in chromosome segregation","termid":"PBO:0036412"}


id: PBO:0000088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal family","termid":"PBO:0000088"}


id: PBO:0001382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIN3 family co-repressor","termid":"PBO:0001382"}


id: PBO:0079214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis specific serine kinase 6","termid":"PBO:0079214"}


id: PBO:0028351
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_CENP-A_containing_chromatin_organization","termid":"PBO:0028351"}


id: MONDO:0024315
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infection of the epicondyles by a parasite.","definition_xrefs":["NCIT:C34587"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endophthalmitis","termid":"MONDO:0016047"},{"relation_name":"is_a","term_name":"parasitic eye infection","termid":"MONDO:0020947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"parasitic endophthalmitis","secondary_identifiers":["ICD9:360.13","icd11.foundation:935014361","MEDGEN:4954","UMLS:C0014238","SCTID:57100005"],"synonyms":[{"name":"parasitic endophthalmitis","type":"exact"}],"termid":"MONDO:0024315","xrefs":{"Monarch":{"xref_id":"0024315"}}}


id: MONDO:0009621
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Microcephaly-cervical spine fusion anomalies syndrome is characterized by microcephaly, facial dysmorphism (beaked nose, low-set ears, downslanting palpebral fissures, micrognathia), mild intellectual deficit, short stature, and cervical spine fusion anomalies producing spinal cord compression. It has been described in two brothers born to consanguineous parents. Transmission is likely to be autosomal recessive.","definition_xrefs":["Orphanet:2522"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microcephaly-cervical spine fusion anomalies syndrome","secondary_identifiers":["GARD:3610","MEDGEN:208663","SCTID:715462003","OMIM:251250","MESH:C537325","UMLS:C0796066"],"synonyms":[{"name":"microcephaly cervical spine fusion anomalies","type":"related"},{"name":"microcephaly with cervical spine fusion anomalies","type":"related"},{"name":"microcephaly, mild intellectual disability, short stature, and skeletal anomalies","type":"related"},{"name":"microcephaly, mild mental retardation, short stature, and skeletal anomalies","type":"related"}],"termid":"MONDO:0009621","xrefs":{"Monarch":{"xref_id":"0009621"}}}


id: PBO:0047663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FKBP prolyl isomerase family member 15","termid":"PBO:0047663"}


id: PBO:0043000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitinase 3 like 1","termid":"PBO:0043000"}


id: PBO:0051085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy constant gamma 3 (G3m marker)","termid":"PBO:0051085"}


id: PBO:0046579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 21, envelope","termid":"PBO:0046579"}


id: GO:0052320
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates, maintains or increases the frequency, rate or extent of phytoalexin metabolism, the chemical reactions and pathways involving phytoalexins.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of phytoalexin metabolic process (obsolete GO:0052320)","synonyms":[{"name":"activation of phytoalexin metabolism","type":"narrow"},{"name":"positive regulation of phytoalexin metabolism","type":"related"},{"name":"stimulation of phytoalexin metabolism","type":"narrow"},{"name":"up regulation of phytoalexin metabolism","type":"exact"},{"name":"up-regulation of phytoalexin metabolism","type":"exact"},{"name":"upregulation of phytoalexin metabolism","type":"exact"}],"termid":"GO:0052320"}


id: MONDO:1012442
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"malignant melanoma, non-human animal","termid":"MONDO:1011821"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malignant melanoma, dog","secondary_identifiers":["OMIA:001724-9615"],"termid":"MONDO:1012442","xrefs":{"Monarch":{"xref_id":"1012442"}}}


id: PBO:0016561
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by Giardia lamblia single peptide cis-prenyltransferase","termid":"PBO:0016561"}


id: PBO:0067621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 793, pseudogene","termid":"PBO:0067621"}


id: PBO:0039994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 8B","termid":"PBO:0039994"}


id: GO:1990786
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded DNA stimulus.","definition_xrefs":["PMID:10051633"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"response to dsDNA","termid":"GO:1990784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to dsDNA","termid":"GO:1990786"}


id: SO:0001088
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The covalent bond between sulfur atoms that binds two peptide chains or different parts of one peptide chain and is a structural determinant in many protein molecules.","definition_xrefs":["UniProt:curation_manual","EBIBS:GAR"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0001088 disulfide_bond (obsolete SO:0001088)","synonyms":[{"name":"disulfid","type":"related"},{"name":"disulfide","type":"related"},{"name":"disulfide bond","type":"related"},{"name":"disulphide","type":"exact"},{"name":"disulphide bond","type":"related"}],"termid":"SO:0001088"}


id: GO:0035977
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of sugar residues from a glycosylated protein that contributes to the breakdown of a glycoprotein.","definition_xrefs":["GOC:vw","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein deglycosylation","termid":"GO:0006517"},{"relation_name":"part_of","term_name":"glycoprotein catabolic process","termid":"GO:0006516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"protein deglycosylation involved in glycoprotein catabolic process","termid":"GO:0035977"}


id: PBO:0030432
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_tRNA_methyltransferase_activity","termid":"PBO:0030432"}


id: GO:0001188
data:
  {"annotated_genes":["SJAG_03956","SJAG_00692","SJAG_02813"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65055,69881,79237],"is_not":false,"summary":null,"term":"GO:0001188"}]},"cv_name":"biological_process","definition":"The formation of a large multiprotein-DNA complex that self-assembles on gene promoter through the sequential recruitment of the general initiation factors that compose the preinitiation complex (PIC) (which includes including UBF, SL1, RRN3 and TBP in human). The PIC engages RNA polymerase I on its DNA template strand and sparks polymerization of the first few RNA nucleotides.","definition_xrefs":["PMID:14969726","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription preinitiation complex assembly","termid":"GO:0070897"},{"relation_name":"part_of","term_name":"transcription initiation at RNA polymerase I promoter","termid":"GO:0006361"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00692":null,"SJAG_02813":null,"SJAG_03956":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006351"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0010467","GO:0044085","GO:0006351"],"is_obsolete":false,"name":"RNA polymerase I preinitiation complex assembly","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:0001189"],"synonyms":[{"name":"RNA polymerase I transcriptional preinitiation complex assembly","type":"exact"},{"name":"RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript","type":"narrow"},{"name":"RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nucleolar primary rRNA transcript","type":"narrow"}],"termid":"GO:0001188","terms_by_termid":{"GO:0001188":null}}


id: MOD:01466
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:302#K","PubMed:15939799"],"direct_ancestors":[{"relation_name":"is_a","term_name":"menadione quinone derivative","termid":"MOD:00621"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"menadione quinone derivative - site C","synonyms":[{"name":"Menadione","type":"related"},{"name":"Menadione quinone derivative","type":"related"}],"termid":"MOD:01466"}


id: PBO:0089454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase Ria1","termid":"PBO:0089454"}


id: GO:0090554
data:
  {"annotated_genes":["SJAG_00669","SJAG_02897","SJAG_01731"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96243,99745,102017],"is_not":false,"summary":null,"term":"GO:0090554"}]},"cv_name":"molecular_function","definition":"Catalysis of the movement of phosphatidylcholine from the cytosolic to the exoplasmic leaflet of a membrane, using energy from the hydrolysis of ATP.","definition_xrefs":["PMID:16452632","RHEA:38583","GOC:ab"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylcholine transporter activity","termid":"GO:0008525"},{"relation_name":"is_a","term_name":"floppase activity","termid":"GO:0140328"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00669":null,"SJAG_01731":null,"SJAG_02897":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140303"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0140303"],"is_obsolete":false,"name":"phosphatidylcholine floppase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ATP-dependent phosphatidylcholine transporter activity","type":"broad"},{"name":"ATPase-coupled phosphatidylcholine transporter activity","type":"broad"},{"name":"phosphatidylcholine floppase activity (cytosolic to exoplasmic leaflet)","type":"exact"},{"name":"phosphatidylcholine-translocating ATPase activity","type":"broad"}],"termid":"GO:0090554","terms_by_termid":{"GO:0090554":null}}


id: PBO:0048969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol-3-phosphate acyltransferase, mitochondrial","termid":"PBO:0048969"}


id: GO:0030579
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of SMAD signaling proteins by ubiquitination and targeting to the proteasome.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete ubiquitin-dependent SMAD protein catabolic process (obsolete GO:0030579)","synonyms":[{"name":"ubiquitin-dependent SMAD protein breakdown","type":"exact"},{"name":"ubiquitin-dependent SMAD protein catabolism","type":"exact"},{"name":"ubiquitin-dependent SMAD protein degradation","type":"exact"}],"termid":"GO:0030579"}


id: GO:0070952
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a gram-positive bacterium, the directed killing of a gram-positive bacterium by a neutrophil.","definition_xrefs":["GOC:add","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neutrophil mediated killing of bacterium","termid":"GO:0070950"},{"relation_name":"regulates","term_name":"neutrophil-mediated killing of gram-positive bacterium","termid":"GO:0070946"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of neutrophil mediated killing of gram-positive bacterium","termid":"GO:0070952"}


id: PBO:0027486
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_ubiquitinated_protein_in_cell_during_G0","termid":"PBO:0027486"}


id: GO:0050646
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to 5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid, a straight-chain fatty acid with twenty carbon atoms and four double bonds.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty acid binding","termid":"GO:0036041"},{"relation_name":"is_a","term_name":"icosanoid binding","termid":"GO:0050542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008289"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0008289"],"is_obsolete":false,"name":"5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid binding","synonyms":[{"name":"5-oxo-6E,8Z,11Z,14Z-eicosatetraenoic acid binding","type":"exact"}],"termid":"GO:0050646"}


id: FYPO:0000901
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A  microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which microtubule growth (polymerization), catastrophe (the transition from growth to shrinkage), shrinkage (depolymerization), or rescue (the transition from shrinkage to growth) is abnormal.","definition_xrefs":["GO:0031109","PomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton organization during vegetative growth","termid":"FYPO:0001350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000054","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal microtubule dynamics during vegetative growth","synonyms":[{"name":"abnormal microtubule growth or shrinkage during vegetative growth","type":"narrow"},{"name":"abnormal microtubule polymerisation or depolymerisation during vegetative growth","type":"narrow"},{"name":"abnormal microtubule polymerization or depolymerization during vegetative growth","type":"narrow"}],"termid":"FYPO:0000901"}


id: PBO:0053178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LEMD1 divergent transcript","termid":"PBO:0053178"}


id: MOD:00431
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Covalent modification of, or a change resulting in an alteration of the measured molecular mass of, a peptide or protein amino acid residue with a secondary loss of a neutral molecular fragment.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by amino acid modified","termid":"MOD:01157"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified residue with a secondary neutral loss","synonyms":[{"name":"NLModRes","type":"exact"}],"termid":"MOD:00431"}


id: FYPO:0002805
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which sodium ion import into the cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal transport","termid":"FYPO:0001071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal sodium import","synonyms":[{"name":"normal sodium import across plasma membrane","type":"exact"},{"name":"normal sodium import during mitotic cell cycle","type":"related"},{"name":"normal sodium import during vegetative growth","type":"exact"},{"name":"normal sodium import into cell","type":"exact"},{"name":"normal sodium ion import into cell","type":"exact"},{"name":"normal sodium uptake","type":"exact"}],"termid":"FYPO:0002805"}


id: GO:0120180
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of a cell-substrate junction into its constituent components.","definition_xrefs":["GOC:bc","GOC:aruk","PMID:25490267"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-substrate junction organization","termid":"GO:0150115"},{"relation_name":"is_a","term_name":"cell junction disassembly","termid":"GO:0150146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell-substrate junction disassembly","termid":"GO:0120180"}


id: PBO:0053278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukocyte immunoglobulin like receptor B4","termid":"PBO:0053278"}


id: MONDO:0004237
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare poorly differentiated morphologic variant of large cell lung carcinoma characterized by the presence of rhabdoid cells.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lung large cell carcinoma","termid":"MONDO:0003050"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"large cell carcinoma with rhabdoid phenotype","secondary_identifiers":["MEDGEN:226828","ONCOTREE:RLCLC","ICDO:8014/3","NCIT:C6876","DOID:7480","UMLS:C1265997"],"synonyms":[{"name":"RLCLC","type":"related"},{"name":"large cell carcinoma with rhabdoid phenotype (morphologic abnormality)","type":"exact"},{"name":"large cell lung carcinoma with rhabdoid phenotype","type":"exact"}],"termid":"MONDO:0004237","xrefs":{"Monarch":{"xref_id":"0004237"}}}


id: MONDO:1010082
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Evans syndrome that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune thrombocytopenia, non-human animal","termid":"MONDO:1010069"},{"relation_name":"is_a","term_name":"syndromic disease, non-human animal","termid":"MONDO:1011360"},{"relation_name":"is_a","term_name":"autoimmune hemolytic anemia, non-human animal","termid":"MONDO:1011406"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Evans syndrome, non-human animal","secondary_identifiers":["OMIA:001286"],"termid":"MONDO:1010082","xrefs":{"Monarch":{"xref_id":"1010082"}}}


id: FYPO:0007980
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which cells contain interphase microtubule bundles with microtubule overlaps longer than normal.","definition_xrefs":["PomBase:mlr","PMID:15837798"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule bundle","termid":"FYPO:0005558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0005447","FYPO:0001985","FYPO:0002399","FYPO:0000002"],"is_obsolete":false,"name":"Increased microtubule overlap length in bundles during mitotic interphase:","termid":"FYPO:0007980"}


id: GO:0009917
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the removal of a C-5 double bond in the B ring of a sterol.","definition_xrefs":["ISBN:0943088399"],"gene_count":0,"genotype_count":0,"name":"obsolete sterol 5-alpha reductase activity (obsolete GO:0009917)","termid":"GO:0009917"}


id: FYPO:0005272
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which microtubule plus-end directed mitotic chromosome migration does not occur. In microtubule plus-end directed mitotic chromosome migration, chromosomes that are laterally attached to one or more mitotic spindle microtubules migrate towards the spindle equator via plus-end-directed movement along the microtubules.","definition_xrefs":["GO:0099606","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule plus-end directed mitotic chromosome migration","termid":"FYPO:0005271"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000337"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0000337","FYPO:0000002","FYPO:0000138","FYPO:0001320","FYPO:0000641"],"is_obsolete":false,"name":"abolished microtubule plus-end directed mitotic chromosome migration","synonyms":[{"name":"abolished microtubule plus-end directed chromosome migration during mitosis","type":"exact"},{"name":"abolished microtubule plus-end directed mitotic chromosome migration during vegetative growth","type":"exact"},{"name":"abolished microtubule plus-end-directed mitotic chromosome migration","type":"exact"},{"name":"abolished plus-end directed chromosome gliding","type":"exact"},{"name":"microtubule plus-end directed mitotic chromosome migration abolished","type":"exact"}],"termid":"FYPO:0005272"}


id: PBO:0014236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AAA family ATPase involved in ubiquitin-mediated protein degradation Cdc48","termid":"PBO:0014236"}


id: GO:0050545
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-sulfopyruvate + H+ = CO2 + sulfoacetaldehyde.","definition_xrefs":["RHEA:20948","EC:4.1.1.79"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"sulfopyruvate decarboxylase activity","secondary_identifiers":["MetaCyc:R231-RXN","KEGG_REACTION:R05774"],"synonyms":[{"name":"sulfopyruvate carboxy-lyase (2-sulfoacetaldehyde-forming)","type":"related"},{"name":"sulfopyruvate carboxy-lyase activity","type":"related"},{"name":"sulphopyruvate decarboxylase activity","type":"exact"}],"termid":"GO:0050545"}


id: PBO:0039970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 4A pseudogene 1","termid":"PBO:0039970"}


id: MONDO:1010110
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hyperphosphatemia that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic disease, non-human animal","termid":"MONDO:1011331"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperphosphatemia, non-human animal","secondary_identifiers":["OMIA:002052"],"termid":"MONDO:1010110","xrefs":{"Monarch":{"xref_id":"1010110"}}}


id: MONDO:0006165
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A very rare colorectal carcinoma characterized by the presence of a malignant squamous cell infiltrate.","definition_xrefs":["NCIT:C43588"],"direct_ancestors":[{"relation_name":"is_a","term_name":"squamous cell carcinoma","termid":"MONDO:0005096"},{"relation_name":"is_a","term_name":"colorectal carcinoma","termid":"MONDO:0024331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"colorectal squamous cell carcinoma","secondary_identifiers":["MEDGEN:317527","EFO:1000198","UMLS:C1707442"],"synonyms":[{"name":"colorectal (colon or rectal) squamous cell cancer","type":"exact"},{"name":"colorectal squamous cell cancer","type":"exact"},{"name":"colorectal squamous cell carcinoma","type":"exact"},{"name":"colorectum squamous cell carcinoma","type":"exact"}],"termid":"MONDO:0006165","xrefs":{"Monarch":{"xref_id":"0006165"}}}


id: GO:0060988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of macromolecules to form a macromolecular complex that contains a tube of lipid surrounded by a protein coat involved in membrane shaping of vesicle membranes as they fuse or undergo fission.","definition_xrefs":["GOC:dph","GOC:ascb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-lipid complex assembly","termid":"GO:0065005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"lipid tube assembly","synonyms":[{"name":"lipid tubulation","type":"exact"}],"termid":"GO:0060988"}


id: GO:0033970
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-oxo-3-ureidopropanoate + H2O = H+ + malonate + urea.","definition_xrefs":["EC:3.5.1.95","RHEA:17361"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016810","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"N-malonylurea hydrolase activity","secondary_identifiers":["MetaCyc:3.5.1.95-RXN","KEGG_REACTION:R07629"],"synonyms":[{"name":"3-oxo-3-ureidopropanoate amidohydrolase (urea- and malonate-forming) activity","type":"related"},{"name":"ureidomalonase activity","type":"related"}],"termid":"GO:0033970"}


id: PBO:0078970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ser (anticodon CGA) 2-1","termid":"PBO:0078970"}


id: PBO:0049822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histidine decarboxylase","termid":"PBO:0049822"}


id: RO:0002570
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x is a conduit for y iff y overlaps through the lumen_of of x, and y has parts on either side of the lumen of x.","direct_ancestors":[{"relation_name":"is_a","term_name":"overlaps","termid":"RO:0002131"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conduit_for","termid":"RO:0002570"}


id: PBO:0059117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monooxygenase DBH like 1","termid":"PBO:0059117"}


id: GO:0052506
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of symbiont ethylene-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of defense-related symbiont ethylene-mediated signal transduction pathway (obsolete GO:0052506)","synonyms":[{"name":"activation by organism of defense-related symbiont ethylene-mediated signal transduction pathway","type":"narrow"},{"name":"induction by organism of defense-related symbiont ethylene-mediated signal transduction pathway","type":"narrow"},{"name":"positive regulation by organism of defense-related symbiont ethylene-mediated signal transduction pathway","type":"exact"},{"name":"upregulation by organism of defense-related symbiont ethylene-mediated signal transduction pathway","type":"narrow"}],"termid":"GO:0052506"}


id: PBO:0078356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (anticodon TTC) 2-2","termid":"PBO:0078356"}


id: MONDO:0056819
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma arising from the nasal cavity or paranasal sinuses.","definition_xrefs":["NCIT:C54293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"head and neck carcinoma","termid":"MONDO:0002038"},{"relation_name":"is_a","term_name":"nasal cavity and paranasal sinus neoplasm","termid":"MONDO:0056820"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"nasal cavity and paranasal sinus carcinoma","secondary_identifiers":["MEDGEN:328032","UMLS:C1710095"],"synonyms":[{"name":"nasal cavity and paranasal sinus cancer","type":"exact"},{"name":"nasal cavity and paranasal sinus carcinoma","type":"exact"},{"name":"paranasal sinus and nasal cavity cancer","type":"exact"},{"name":"sinonasal carcinoma","type":"exact"}],"termid":"MONDO:0056819","xrefs":{"Monarch":{"xref_id":"0056819"}}}


id: PBO:0045254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxyribonuclease 1","termid":"PBO:0045254"}


id: PBO:0004037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleosome assembly protein (predicted)","termid":"PBO:0004037"}


id: MONDO:0000045
data:
  {"annotated_genes":["SJAG_01926"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87702],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0026731"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"congenital hypothyroidism","termid":"MONDO:0018612"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01926":null},"genotype_count":0,"is_obsolete":false,"name":"hypothyroidism, congenital, nongoitrous","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIMPS:275200"],"termid":"MONDO:0000045","terms_by_termid":{"MONDO:0026731":null},"xrefs":{"Monarch":{"xref_id":"0000045"}}}


id: MONDO:0014852
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete palmoplantar carcinoma, multiple self-healing (obsolete MONDO:0014852)","termid":"MONDO:0014852","xrefs":{"Monarch":{"xref_id":"0014852"}}}


id: GO:0120056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Migration of ingested material along the length of the large intestine.","definition_xrefs":["GOC:sl","PMID:28157109"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal motility","termid":"GO:0120054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"large intestinal transit","synonyms":[{"name":"colon transit","type":"exact"},{"name":"colonic transit","type":"exact"},{"name":"large bowel transit","type":"exact"},{"name":"large intestine transit","type":"exact"}],"termid":"GO:0120056"}


id: PBO:0085513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S15A and bacterial S8; RPS22B has a paralog, RPS22A, that arose from the whole genome duplication","termid":"PBO:0085513"}


id: MONDO:0014440
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Bardet-Biedl syndrome in which the cause of the disease is a mutation in the BBS12 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bardet-Biedl syndrome","termid":"MONDO:0015229"},{"relation_name":"is_a","term_name":"BBS12-related ciliopathy","termid":"MONDO:1040045"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Bardet-Biedl syndrome 12","secondary_identifiers":["MEDGEN:347910","OMIM:615989","UMLS:C1859570","GARD:10211","DOID:0110134","MESH:C565921"],"synonyms":[{"name":"BBS12","type":"exact"},{"name":"BBS12 Bardet-Biedl syndrome","type":"exact"},{"name":"Bardet-Biedl syndrome 12","type":"exact"},{"name":"Bardet-Biedl syndrome caused by mutation in BBS12","type":"exact"},{"name":"Bardet-Biedl syndrome type 12","type":"exact"}],"termid":"MONDO:0014440","xrefs":{"Monarch":{"xref_id":"0014440"}}}


id: PBO:0029476
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-shortened_telomeres","termid":"PBO:0029476"}


id: PBO:0051213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 4/OR15-8 (non-functional)","termid":"PBO:0051213"}


id: PBO:0088872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hrd1 ubiquitin ligase complex subunit Npl4","termid":"PBO:0088872"}


id: GO:0008563
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + H2O + alpha-factor(in) = ADP + phosphate + alpha-factor(out). The export of the alpha-factor sex pheromone by an ABC-type (ATP-binding cassette-type) ATPase, characterized by the presence of two similar ATP-binding domains, that does not undergo phosphorylation during the transport process.","definition_xrefs":["EC:3.6.3.48"],"gene_count":0,"genotype_count":0,"name":"obsolete alpha-factor sex pheromone exporter (obsolete GO:0008563)","synonyms":[{"name":"alpha-factor sex pheromone exporter","type":"exact"},{"name":"alpha-factor-transporting ATPase","type":"related"}],"termid":"GO:0008563"}


id: GO:1903622
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of RNA polymerase III activity.","definition_xrefs":["PMID:25392932","GO_REF:0000059","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of RNA polymerase III activity (obsolete GO:1903622)","synonyms":[{"name":"regulation of DNA-directed RNA polymerase activity involved in transcription from RNA polymerase III promoter","type":"exact"}],"termid":"GO:1903622"}


id: PBO:0029570
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_spore","termid":"PBO:0029570"}


id: GO:0070130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA in a mitochondrion.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of translation","termid":"GO:0017148"},{"relation_name":"is_a","term_name":"regulation of mitochondrial translation","termid":"GO:0070129"},{"relation_name":"negatively_regulates","term_name":"mitochondrial translation","termid":"GO:0032543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0140053"}],"interesting_parent_ids":["GO:0008150","GO:0140053","GO:0010467"],"is_obsolete":false,"name":"negative regulation of mitochondrial translation","synonyms":[{"name":"negative regulation of mitochondrial protein anabolism","type":"exact"},{"name":"negative regulation of mitochondrial protein biosynthesis","type":"exact"},{"name":"negative regulation of mitochondrial protein formation","type":"exact"},{"name":"negative regulation of mitochondrial protein synthesis","type":"exact"}],"termid":"GO:0070130"}


id: PBO:0028214
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_arsenate_reductase_activity","termid":"PBO:0028214"}


id: GO:0010085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process resulting in the establishment of polarity along the proximal/distal axis.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of axis polarity","termid":"GO:0065001"},{"relation_name":"part_of","term_name":"proximal/distal axis specification","termid":"GO:0009946"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"polarity specification of proximal/distal axis","termid":"GO:0010085"}


id: PBO:0086910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative X-Pro aminopeptidase; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; YFR006W is not an essential gene","termid":"PBO:0086910"}


id: PBO:0111337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage and polyadenylation specificity factor complex, symplekin scaffold subunit Pta1","termid":"PBO:0111337"}


id: FYECO:0000395
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which micafungin was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ echinocandin","termid":"FYECO:0000391"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ micafungin","termid":"FYECO:0000395"}


id: PBO:0068487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 70, pseudogene","termid":"PBO:0068487"}


id: GO:0045321
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in morphology and behavior of a leukocyte resulting from exposure to a specific antigen, mitogen, cytokine, cellular ligand, or soluble factor.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell activation","termid":"GO:0001775"},{"relation_name":"is_a","term_name":"immune system process","termid":"GO:0002376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leukocyte activation","secondary_identifiers":["Wikipedia:Immunologic_activation"],"synonyms":[{"name":"immune cell activation","type":"exact"},{"name":"leucocyte activation","type":"exact"}],"termid":"GO:0045321"}


id: FYPO:0006088
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of DNA binding by a gene product is normal (i.e. indistinguishable from wild type) during a cellular response to DNA damage. The relevant gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal DNA binding","termid":"FYPO:0000655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000653"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000257","FYPO:0000653"],"is_obsolete":false,"name":"normal DNA binding during cellular response to DNA damage","synonyms":[{"name":"normal DNA binding in response to DNA damage","type":"related"}],"termid":"FYPO:0006088"}


id: MONDO:0000349
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Charcot-Marie-Tooth disease type 1 (obsolete MONDO:0000349)","termid":"MONDO:0000349","xrefs":{"Monarch":{"xref_id":"0000349"}}}


id: MONDO:0859148
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with seizures and gingival overgrowth","secondary_identifiers":["OMIM:619323","MEDGEN:1784299","UMLS:C5543395"],"termid":"MONDO:0859148","xrefs":{"Monarch":{"xref_id":"0859148"}}}


id: MONDO:1012212
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"persistent right aortic arch, non-human animal","termid":"MONDO:1011644"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"persistent right aortic arch, dog","secondary_identifiers":["OMIA:000794-9615"],"termid":"MONDO:1012212","xrefs":{"Monarch":{"xref_id":"1012212"}}}


id: PBO:0116748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF related BAF chromatin remodeling complex subunit B1","termid":"PBO:0116748"}


id: PBO:0065784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamine and serine rich 1","termid":"PBO:0065784"}


id: PBO:0064626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inorganic pyrophosphatase 2","termid":"PBO:0064626"}


id: PBO:0067937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 239","termid":"PBO:0067937"}


id: MOD:01777
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a C-terminal glycine residue to S-(glycyl)-L-cysteine by forming a thioester bond with a free L-cysteine.","definition_xrefs":["PubMed:18799456","PubMed:18842002","PubMed:18771296","RESID:AA0206","PubMed:17726030","ChEBI:22050","PubMed:3306404","PubMed:18359941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified glycine residue","termid":"MOD:00908"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-(glycyl)-L-cysteine (Gly)","synonyms":[{"name":"(2R)-2-amino-3-[(aminoacetyl)sulfanyl]propanoic acid","type":"exact"},{"name":"1-(cystein-S-yl)-glycinate","type":"exact"},{"name":"MOD_RES CysO-cysteine adduct","type":"exact"},{"name":"S-(2-amino-1-oxoethyl)cysteine","type":"exact"},{"name":"S-(glycyl)-L-cysteine","type":"exact"},{"name":"glycine cysteine thioester","type":"exact"}],"termid":"MOD:01777"}


id: GO:0071346
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interferon-gamma stimulus. Interferon gamma is the only member of the type II interferon found so far.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to type II interferon","termid":"GO:0034341"},{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to type II interferon","synonyms":[{"name":"cellular response to gamma-interferon","type":"related"},{"name":"cellular response to immune interferon","type":"exact"},{"name":"cellular response to interferon-gamma","type":"broad"},{"name":"cellular response to type II IFN","type":"broad"}],"termid":"GO:0071346"}


id: MONDO:0004033
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete familial ovarian carcinoma (obsolete MONDO:0004033)","termid":"MONDO:0004033","xrefs":{"Monarch":{"xref_id":"0004033"}}}


id: PBO:0018243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA queuosine modification protein","termid":"PBO:0018243"}


id: PR:O13671
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An exportin-2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02811","PRO:DNx","PANTHER:PTHR10997:SF8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"importin-alpha re-exporter (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC30B4.05","secondary_identifiers":["UniProtKB:O13671"],"synonyms":[{"name":"Spom972h-CSE1L","type":"exact"},{"name":"cellular apoptosis susceptibility protein homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13671"}


id: GO:1903925
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bisphenol A stimulus.","definition_xrefs":["GOC:TermGenie","PMID:22957036","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to bisphenol A","termid":"GO:1903925"}


id: GO:0010301
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD+ + xanthoxin = (+)-abscisic aldehyde + H+ + NADH.","definition_xrefs":["EC:1.1.1.288","RHEA:12548"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol dehydrogenase (NAD+) activity","termid":"GO:0004022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"xanthoxin dehydrogenase (NAD+) activity","secondary_identifiers":["KEGG_REACTION:R06954","MetaCyc:1.1.1.288-RXN","GO:0033710"],"synonyms":[{"name":"ABA2","type":"related"},{"name":"xanthoxin dehydrogenase activity","type":"broad"},{"name":"xanthoxin oxidase activity","type":"related"},{"name":"xanthoxin:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0010301"}


id: PBO:0041053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bromodomain containing 7 pseudogene 4","termid":"PBO:0041053"}


id: MONDO:0004173
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare adenocarcinoma arising from Skene gland. It presents as a periurethral or anterior vaginal submucosal mass. It is characterized by morphological features similar to prostate adenocarcinoma.","definition_xrefs":["NCIT:C39863"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paraurethral gland cancer","termid":"MONDO:0001869"},{"relation_name":"is_a","term_name":"vulvar adenocarcinoma","termid":"MONDO:0024336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"adenocarcinoma of skene gland origin","secondary_identifiers":["MEDGEN:282906","DOID:7284","UMLS:C1527427"],"synonyms":[{"name":"Skene gland carcinoma","type":"related"},{"name":"adenocarcinoma of Skene gland","type":"exact"},{"name":"adenocarcinoma of Skene gland origin","type":"exact"},{"name":"carcinoma of Skene gland","type":"exact"},{"name":"carcinoma of Skene's gland","type":"exact"},{"name":"carcinoma of paraurethral gland","type":"exact"},{"name":"carcinoma of the paraurethral gland","type":"exact"},{"name":"paraurethral gland adenocarcinoma","type":"exact"},{"name":"paraurethral gland carcinoma","type":"exact"}],"termid":"MONDO:0004173","xrefs":{"Monarch":{"xref_id":"0004173"}}}


id: MONDO:0012013
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A Weill-Marchesani syndrome characterized by progressive joint stiffness, glaucoma, short stature and lens dislocation. It has been described in three members of a family (the grandfather, his daughter and grandson). It is likely to be transmitted as an autosomal dominant trait. The acronym GEMSS (Glaucoma, Ectopia, Microspherophakia, Stiff joints, Short stature) was proposed as a name for the syndrome. This syndrome shows similarities to Moore-Federman syndrome.","definition_xrefs":["Orphanet:2084"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Weill-Marchesani syndrome","termid":"MONDO:0018096"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Weill-Marchesani syndrome 2, dominant","secondary_identifiers":["MEDGEN:358388","UMLS:C1869115","GARD:2452","OMIM:608328","SCTID:722450007"],"synonyms":[{"name":"GEMSS","type":"exact"},{"name":"GEMSS syndrome","type":"exact"},{"name":"WMS2","type":"exact"},{"name":"Weill-Marchesani syndrome 2","type":"exact"},{"name":"Weill-Marchesani syndrome type 2","type":"exact"},{"name":"Weill-Marchesani syndrome, autosomal dominant","type":"exact"},{"name":"glaucoma, ectopia, microspherophakia, Stiff joints and short stature syndrome","type":"exact"},{"name":"glaucoma-lens ectopia-microspherophakia-stiffness-shortness syndrome","type":"exact"},{"name":"mesodermal Dysmorphodystrophy, congenital","type":"broad"},{"name":"spherophakia-brachymorphia syndrome","type":"broad"}],"termid":"MONDO:0012013","xrefs":{"Monarch":{"xref_id":"0012013"}}}


id: MONDO:0700019
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chromosomal disorder in which chromosome 12 is affected.","definition_xrefs":["MONDO:patterns/chromosome_type"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal anomaly","termid":"MONDO:0020049"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 12 disorder","termid":"MONDO:0700019","xrefs":{"Monarch":{"xref_id":"0700019"}}}


id: PBO:0003201
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.5.1.49","termid":"PBO:0003201"}


id: PBO:0060450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-N-acetylgalactosaminidase","termid":"PBO:0060450"}


id: PR:P87176
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- slx8 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87176"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3D6.11c","synonyms":[{"name":"RING finger protein slx8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RING-dependent E3 ubiquitin-protein ligase slx8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-slx8","type":"exact"},{"name":"synthetic lethal of unknown function protein 8 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87176"}


id: MONDO:0009235
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial benign flecked retina is a rare retinal dystrophy characterized by diffuse bilateral white-yellow fleck-like lessions extending to the far periphery of the retina but sparing the foveal region, with asymptomatic clinical phenotype and absence of electrophysiologic deficits.","definition_xrefs":["Orphanet:363989"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"familial benign flecked retina","secondary_identifiers":["OMIM:228980","UMLS:C1856718","DOID:0111677","ICD10CM:H35.5","MEDGEN:341605","GARD:18651","MESH:C565564"],"synonyms":[{"name":"FLECK retina, familial benign","type":"related"},{"name":"FRFB","type":"related"},{"name":"fleck retina, familial benign","type":"exact"}],"termid":"MONDO:0009235","xrefs":{"Monarch":{"xref_id":"0009235"}}}


id: GO:0051272
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the movement of a cellular component.","definition_xrefs":["GOC:jl","GOC:ai","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cellular component movement (obsolete GO:0051272)","synonyms":[{"name":"positive regulation of cellular component motion","type":"exact"}],"termid":"GO:0051272"}


id: MONDO:0014339
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive cerebellar ataxia in which the cause of the disease is a mutation in the STUB1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive cerebellar ataxia","termid":"MONDO:0015244"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005559"],"is_obsolete":false,"name":"autosomal recessive spinocerebellar ataxia 16","secondary_identifiers":["UMLS:C5190574","DOID:0080029","GARD:17689","OMIM:615768","MEDGEN:1674542","Orphanet:412057"],"synonyms":[{"name":"SCAR16","type":"exact"},{"name":"STUB1 autosomal recessive cerebellar ataxia","type":"exact"},{"name":"autosomal recessive cerebellar ataxia caused by mutation in STUB1","type":"exact"},{"name":"autosomal recessive cerebellar ataxia due to STUB1 deficiency","type":"related"},{"name":"autosomal recessive spinocerebellar ataxia 16","type":"exact"},{"name":"autosomal recessive spinocerebellar ataxia type 16","type":"exact"},{"name":"spinocerebellar ataxia autosomal recessive type 16","type":"exact"},{"name":"spinocerebellar ataxia, autosomal recessive 16","type":"related"},{"name":"spinocerebellar ataxia, autosomal recessive type 16","type":"exact"}],"termid":"MONDO:0014339","xrefs":{"Monarch":{"xref_id":"0014339"}}}


id: PBO:0034069
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-anabranch_of","termid":"PBO:0034069"}


id: PBO:0069988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1283, pseudogene","termid":"PBO:0069988"}


id: PBO:0004401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"condensin complex non-SMC subunit Cnd1","termid":"PBO:0004401"}


id: PBO:0120344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA wybutosine-synthesizing protein 2","termid":"PBO:0120344"}


id: PR:000050473
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GTP-binding protein rho1 (Schizosaccharomyces pombe) that is non-covalently bound to GTP.","definition_xrefs":["PomBase:VW","PRO:DAN","PMID:10651902"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GTP-binding protein rho1 (Schizosaccharomyces pombe 972h-)","termid":"PR:Q09914"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rho1/GTP+","pombase_gene_id":"SPAC1F7.04","synonyms":[{"name":"PomBase_original_PRO_term_name: GTP-binding protein rho1, GTP-bound form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-rho1/GTP+","type":"exact"},{"name":"rho1/GTP+","type":"exact"}],"termid":"PR:000050473"}


id: GO:0106383
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process which produces a dAMP from derivatives of it, without de novo synthesis.","definition_xrefs":["PMID:21829339","PMID:6605343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dAMP biosynthetic process","termid":"GO:0006170"},{"relation_name":"is_a","term_name":"purine deoxyribonucleotide salvage","termid":"GO:0106381"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"dAMP salvage","termid":"GO:0106383"}


id: PBO:0087085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L4A; N-terminally acetylated; homologous to mammalian ribosomal protein L4 and bacterial L4; RPL4A has a paralog, RPL4B, that arose from the whole genome duplication","termid":"PBO:0087085"}


id: PBO:0056799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitofusin 2","termid":"PBO:0056799"}


id: MONDO:0021284
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A in situ carcinoma that involves the ureter.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"in situ carcinoma","termid":"MONDO:0004647"},{"relation_name":"is_a","term_name":"ureter carcinoma","termid":"MONDO:0006481"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"carcinoma in situ of ureter","secondary_identifiers":["MEDGEN:1660901","SCTID:92782006","ICD9:233.9","NCIT:C4529","UMLS:C4721448"],"synonyms":[{"name":"stage 0is ureter cancer","type":"exact"},{"name":"carcinoma in situ of the ureter","type":"exact"},{"name":"carcinoma in situ of ureter","type":"exact"},{"name":"stage 0 ureter carcinoma","type":"exact"},{"name":"stage 0is carcinoma of the ureter","type":"exact"},{"name":"stage 0is carcinoma of ureter","type":"exact"},{"name":"stage 0is ureter cancer aJCC v7","type":"exact"},{"name":"stage 0is ureter carcinoma","type":"exact"},{"name":"stage 0is ureter urothelial cancer","type":"exact"},{"name":"stage 0is ureter urothelial carcinoma","type":"exact"},{"name":"stage 0is ureter urothelial carcinoma aJCC v7","type":"exact"},{"name":"stage 0is ureteral carcinoma","type":"exact"},{"name":"ureter cancer stage 0is","type":"exact"},{"name":"ureter carcinoma in situ","type":"exact"},{"name":"ureter in situ carcinoma","type":"exact"},{"name":"ureteral carcinoma in situ","type":"exact"}],"termid":"MONDO:0021284","xrefs":{"Monarch":{"xref_id":"0021284"}}}


id: PBO:0079704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"upstream binding protein 1","termid":"PBO:0079704"}


id: PBO:0056461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MBL associated serine protease 1","termid":"PBO:0056461"}


id: PBO:0034678
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_transcription_from_CRE_promoter_during_cellular_response_to_miconazole","termid":"PBO:0034678"}


id: PBO:0047602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FHF complex subunit HOOK interacting protein 2A","termid":"PBO:0047602"}


id: MONDO:0032912
data:
  {"annotated_genes":["SJAG_00739"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88496],"is_not":false,"summary":null,"term":"MONDO:0032912"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Coffin-Siris syndrome","termid":"MONDO:0015452"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00739":null},"genotype_count":0,"is_obsolete":false,"name":"Coffin-Siris syndrome 11","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0112372","OMIM:618779","UMLS:C5241442","GARD:16379","MEDGEN:1717402"],"synonyms":[{"name":"COFFIN-SIRIS SYNDROME 11","type":"related"},{"name":"CSS11","type":"related"}],"termid":"MONDO:0032912","terms_by_termid":{"MONDO:0032912":null},"xrefs":{"Monarch":{"xref_id":"0032912"}}}


id: GO:0070184
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of coupling tyrosine to tyrosyl-tRNA in a mitochondrion, catalyzed by tyrosyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.","definition_xrefs":["GOC:mah","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tyrosyl-tRNA aminoacylation","termid":"GO:0006437"},{"relation_name":"is_a","term_name":"tRNA aminoacylation for mitochondrial protein translation","termid":"GO:0070127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0010467","GO:0140053","GO:0008150","GO:0006399"],"is_obsolete":false,"name":"mitochondrial tyrosyl-tRNA aminoacylation","termid":"GO:0070184"}


id: PATO:0002399
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A rotation quality inhering in a bearer by virtue of being rotated towards the front and the middle of an organism.","definition_xrefs":["PATOC:JI"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rotated","termid":"PATO:0001599"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anteromedially rotated","termid":"PATO:0002399"}


id: PBO:0113389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by SAGE; overlaps tRNA-Pro/YNCO0011W","termid":"PBO:0113389"}


id: GO:1990854
data:
  {"annotated_genes":["SJAG_04221","SJAG_01116"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108859,117062],"is_not":false,"summary":null,"term":"GO:1990854"}]},"cv_name":"biological_process","definition":"The attachment of a lytic vacuole to the endoplasmic reticulum, which may facilitate exchange of metabolites between the organelles.","definition_xrefs":["PMID:26283797"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"},{"relation_name":"is_a","term_name":"maintenance of ER location","termid":"GO:0051685"},{"relation_name":"is_a","term_name":"organelle localization by membrane tethering","termid":"GO:0140056"},{"relation_name":"is_a","term_name":"vacuolar localization","termid":"GO:1990849"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01116":null,"SJAG_04221":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0140056"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0140056"],"is_obsolete":false,"name":"vacuole-ER tethering","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"vacuole-ER attachment","type":"exact"},{"name":"vacuole-endoplasmic reticulum attachment","type":"exact"},{"name":"vacuole-endoplasmic reticulum tethering","type":"exact"}],"termid":"GO:1990854","terms_by_termid":{"GO:1990854":null}}


id: PBO:0087790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO E3 ligase; catalyzes sumoylation of Yku70p/80p and Sir4p promoting telomere anchoring to the nuclear envelope and regulating telomerase activity; DNA-bound form catalyzes a DNA-damaged triggered sumoylation wave resulting in multisite modification of several DNA repair proteins, enhancing interactions between these proteins and accelerating repair; sumoylates Cse4p, a prerequisite for STUbL-mediated Ub-dependent degradation; role in telomere length maintenance","termid":"PBO:0087790"}


id: GO:2000541
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein geranylgeranylation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein modification process","termid":"GO:0031401"},{"relation_name":"is_a","term_name":"regulation of protein geranylgeranylation","termid":"GO:2000539"},{"relation_name":"positively_regulates","term_name":"protein geranylgeranylation","termid":"GO:0018344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein geranylgeranylation","synonyms":[{"name":"positive regulation of C-terminal protein geranylgeranylation","type":"related"},{"name":"positive regulation of protein amino acid geranylgeranylation","type":"exact"}],"termid":"GO:2000541"}


id: PBO:0078439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gly (anticodon TCC) 5-1","termid":"PBO:0078439"}


id: PBO:0086095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein potentially involved in regulation of respiratory metabolism; located in the mitochondria; interacts genetically with RPO41 and physically with Coq5p; encoded within the 25S rRNA gene on the opposite strand","termid":"PBO:0086095"}


id: GO:0033948
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of terminal, non-reducing (2->1) linked beta-D-fructofuranose residues in fructans.","definition_xrefs":["EC:3.2.1.153"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016798","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"fructan beta-(2,1)-fructosidase activity","secondary_identifiers":["MetaCyc:3.2.1.153-RXN"],"synonyms":[{"name":"1-FEH II","type":"related"},{"name":"1-FEH w1","type":"related"},{"name":"1-FEH w2","type":"related"},{"name":"1-fructan exohydrolase activity","type":"related"},{"name":"beta-(2,1)-D-fructan fructohydrolase activity","type":"related"},{"name":"beta-(2,1)-fructan exohydrolase activity","type":"related"},{"name":"beta-(2,1)-linkage-specific fructan-beta-fructosidase activity","type":"related"}],"termid":"GO:0033948"}


id: PBO:0031607
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_M_phase_progression","termid":"PBO:0031607"}


id: PATO:0001930
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue the bearer's having or exhibiting variation its shape.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"variability of shape","termid":"PATO:0001929"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"variant shape","termid":"PATO:0001930"}


id: GO:0009304
data:
  {"annotated_genes":["SJAG_04261","SJAG_04934","SJAG_01765","SJAG_02101","SJAG_04408"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73036,81414,76922,78703,78281],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042797"}]},"cv_name":"biological_process","definition":"The synthesis of transfer RNA (tRNA) from a DNA template.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated transcription","termid":"GO:0006351"},{"relation_name":"is_a","term_name":"tRNA metabolic process","termid":"GO:0006399"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01765":null,"SJAG_02101":null,"SJAG_04261":null,"SJAG_04408":null,"SJAG_04934":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006351"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0006399","GO:0006351","GO:0008150"],"is_obsolete":false,"name":"tRNA transcription","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"tRNA biosynthesis","type":"broad"},{"name":"tRNA biosynthetic process","type":"broad"},{"name":"tRNA synthesis","type":"broad"}],"termid":"GO:0009304","terms_by_termid":{"GO:0042797":null}}


id: PBO:0079315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 7B","termid":"PBO:0079315"}


id: PBO:0091583
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human RAD1","termid":"PBO:0091583"}


id: PBO:0076477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transporter 2, ATP binding cassette subfamily B member","termid":"PBO:0076477"}


id: GO:1900662
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of emericellamide A biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of emericellamide biosynthetic process","termid":"GO:1900659"},{"relation_name":"is_a","term_name":"regulation of emericellamide A biosynthetic process","termid":"GO:1900661"},{"relation_name":"negatively_regulates","term_name":"emericellamide A biosynthetic process","termid":"GO:1900617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"negative regulation of emericellamide A biosynthetic process","synonyms":[{"name":"down regulation of emericellamide A anabolism","type":"exact"},{"name":"down regulation of emericellamide A biosynthesis","type":"exact"},{"name":"down regulation of emericellamide A biosynthetic process","type":"exact"},{"name":"down regulation of emericellamide A formation","type":"exact"},{"name":"down regulation of emericellamide A synthesis","type":"exact"},{"name":"down-regulation of emericellamide A anabolism","type":"exact"},{"name":"down-regulation of emericellamide A biosynthesis","type":"exact"},{"name":"down-regulation of emericellamide A biosynthetic process","type":"exact"},{"name":"down-regulation of emericellamide A formation","type":"exact"},{"name":"down-regulation of emericellamide A synthesis","type":"exact"},{"name":"downregulation of emericellamide A anabolism","type":"exact"},{"name":"downregulation of emericellamide A biosynthesis","type":"exact"},{"name":"downregulation of emericellamide A biosynthetic process","type":"exact"},{"name":"downregulation of emericellamide A formation","type":"exact"},{"name":"downregulation of emericellamide A synthesis","type":"exact"},{"name":"inhibition of emericellamide A anabolism","type":"exact"},{"name":"inhibition of emericellamide A biosynthesis","type":"exact"},{"name":"inhibition of emericellamide A biosynthetic process","type":"narrow"},{"name":"inhibition of emericellamide A formation","type":"exact"},{"name":"inhibition of emericellamide A synthesis","type":"exact"},{"name":"negative regulation of emericellamide A anabolism","type":"exact"},{"name":"negative regulation of emericellamide A biosynthesis","type":"exact"},{"name":"negative regulation of emericellamide A formation","type":"exact"},{"name":"negative regulation of emericellamide A synthesis","type":"exact"}],"termid":"GO:1900662"}


id: PBO:0083908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Flavoprotein subunit of succinate dehydrogenase; couples the oxidation of succinate to the transfer of electrons to ubiquinone as part of the TCA cycle and the mitochondrial respiratory chain; FAD binding to Sdh1p is required for the assembly of the succinate dehydrogenase subunits; mutations in human ortholog SDHA are associated with Leigh syndrome and predisposition to several cancers","termid":"PBO:0083908"}


id: MONDO:0010983
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A dystonia characterized by autosomal dominant inheritance of paroxysmal choreoathetosis and progressive spastic paraplegia, episodes are often precipitated by alcohol, fatigue, or emotional stress that has material basis in heterozygous mutation in the SLC2A1 gene on chromosome 1p34.","definition_xrefs":["DOID:0090044"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paroxysmal dystonia","termid":"MONDO:0016058"},{"relation_name":"is_a","term_name":"disorder of carbohydrate transmembrane transport and absorption","termid":"MONDO:0017706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0003441"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0003441","MONDO:0005066","MONDO:0037792"],"is_obsolete":false,"name":"dystonia 9","secondary_identifiers":["GARD:16656","MEDGEN:371427","MESH:C563401","SCTID:715564000","UMLS:C1832855","Orphanet:53583","OMIM:601042","NANDO:1200520"],"synonyms":[{"name":"Cse choreoathetosis, paroxysmal, with episodic ataxia","type":"related"},{"name":"DYT9","type":"exact"},{"name":"choreoathetosis, kinesigenic, with episodic ataxia and spasticity","type":"related"},{"name":"choreoathetosis/spasticity, episodic","type":"related"},{"name":"dystonia 9","type":"exact"},{"name":"dystonia type 9","type":"exact"},{"name":"episodic choreoathetosis/spasticity","type":"exact"},{"name":"paroxysmal dystonic choreathetosis with episodic ataxia and spasticity","type":"related"}],"termid":"MONDO:0010983","xrefs":{"Monarch":{"xref_id":"0010983"}}}


id: GO:0160201
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A membrane-bounded organelle found in a microsporidian spore,  that swells with water, and exerts pressure to rupture the polar cap and evert the polar tube through which the sporoplasm escapes to infect the host.","definition_xrefs":["PMID:16005007","PMID:19673893","Wikipedia:polaroplast"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"polaroplast","termid":"GO:0160201"}


id: GO:1901746
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of prephenate(2-).","definition_xrefs":["GOC:yaf","PMID:16752890","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid catabolic process","termid":"GO:0043649"},{"relation_name":"is_a","term_name":"prephenate(2-) metabolic process","termid":"GO:1901745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"prephenate(2-) catabolic process","synonyms":[{"name":"prephenate breakdown","type":"exact"},{"name":"prephenate catabolism","type":"exact"},{"name":"prephenate degradation","type":"exact"},{"name":"prephenate(2-) breakdown","type":"exact"},{"name":"prephenate(2-) catabolism","type":"exact"},{"name":"prephenate(2-) degradation","type":"exact"}],"termid":"GO:1901746"}


id: GO:1990312
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type-II cohesin domain of a protein. Type-II cohesin domain is the binding partner of type-II dockerin domain.","definition_xrefs":["PMID:24080387","GOC:mengo_curators","PMID:23195689"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"type-II cohesin domain binding","termid":"GO:1990312"}


id: PBO:0089699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Use1","termid":"PBO:0089699"}


id: MONDO:0014793
data:
  {"annotated_genes":["SJAG_03018"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87571],"is_not":false,"summary":null,"term":"MONDO:0014793"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"epidermal disease","termid":"MONDO:0019268"},{"relation_name":"is_a","term_name":"sterol biosynthesis disorder","termid":"MONDO:0019240"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002525"],"is_obsolete":false,"name":"microcephaly-congenital cataract-psoriasiform dermatitis syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5567510","OMIM:616834","GARD:17886","Orphanet:488168","MEDGEN:1798933"],"synonyms":[{"name":"MCCPD","type":"exact"},{"name":"Sc4Mol deficiency","type":"related"},{"name":"microcephaly, congenital cataract, and psoriasiform dermatitis","type":"exact"},{"name":"smo deficiency","type":"exact"},{"name":"sterol-C4-methyl oxidase deficiency","type":"exact"}],"termid":"MONDO:0014793","terms_by_termid":{"MONDO:0014793":null},"xrefs":{"Monarch":{"xref_id":"0014793"}}}


id: PBO:0004567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-oxoacyl-[acyl-carrier-protein]-synthase condensing enzyme (predicted)","termid":"PBO:0004567"}


id: PR:Q9Y7P1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ERO1-like protein alpha that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04810","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERO1-like protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1450.14c","secondary_identifiers":["UniProtKB:Q9Y7P1"],"synonyms":[{"name":"Spom972h-ERO1L","type":"exact"},{"name":"endoplasmic reticulum oxidoreductin-1-like protein B (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9Y7P1"}


id: FYPO:0000695
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of DNA-1,N6-ethenoadenine N-glycosylase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA-1,N6-ethenoadenine N-glycosylase activity","termid":"FYPO:0000692"},{"relation_name":"is_a","term_name":"increased DNA N-glycosylase activity","termid":"FYPO:0008217"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000654","FYPO:0001985","FYPO:0000707","FYPO:0000652"],"is_obsolete":false,"name":"increased DNA-1,N6-ethenoadenine N-glycosylase activity","termid":"FYPO:0000695"}


id: GO:1900523
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of response to amylopectin.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"is_a","term_name":"regulation of response to amylopectin","termid":"GO:1900521"},{"relation_name":"positively_regulates","term_name":"response to amylopectin","termid":"GO:0044591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to amylopectin","synonyms":[{"name":"activation of response to amylopectin","type":"narrow"},{"name":"up regulation of response to amylopectin","type":"exact"},{"name":"up-regulation of response to amylopectin","type":"exact"},{"name":"upregulation of response to amylopectin","type":"exact"}],"termid":"GO:1900523"}


id: PBO:0064423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patatin like phospholipase domain containing 1","termid":"PBO:0064423"}


id: GO:0052819
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: heteroglycan + GDP-mannose = (1->2)-alpha-D-mannosylheteroglycan + GDP.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete heteroglycan 2-alpha-mannosyltransferase activity (obsolete GO:0052819)","synonyms":[{"name":"heteropolysaccharide 2-alpha-mannosyltransferase activity","type":"exact"}],"termid":"GO:0052819"}


id: GO:1905291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of CAMKK-AMPK signaling cascade.","definition_xrefs":["PMID:22128786","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of calcium-mediated signaling","termid":"GO:0050850"},{"relation_name":"is_a","term_name":"regulation of CAMKK-AMPK signaling cascade","termid":"GO:1905289"},{"relation_name":"positively_regulates","term_name":"CAMKK-AMPK signaling cascade","termid":"GO:0061762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of CAMKK-AMPK signaling cascade","synonyms":[{"name":"activation of CAMKK-AMPK signaling cascade","type":"narrow"},{"name":"activation of stress-activated AMP-activated protein kinase signaling cascade","type":"related"},{"name":"positive regulation of stress-activated AMP-activated protein kinase signaling cascade","type":"related"},{"name":"up regulation of CAMKK-AMPK signaling cascade","type":"exact"},{"name":"up regulation of stress-activated AMP-activated protein kinase signaling cascade","type":"related"},{"name":"up-regulation of CAMKK-AMPK signaling cascade","type":"exact"},{"name":"up-regulation of stress-activated AMP-activated protein kinase signaling cascade","type":"related"},{"name":"upregulation of CAMKK-AMPK signaling cascade","type":"exact"},{"name":"upregulation of stress-activated AMP-activated protein kinase signaling cascade","type":"related"}],"termid":"GO:1905291"}


id: MONDO:0009323
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Halothane hepatitis","secondary_identifiers":["OMIM:234350","SCTID:235873001","MEDGEN:66842","UMLS:C0241913","MESH:C562477"],"synonyms":[{"name":"Halothane hepatitis","type":"exact"}],"termid":"MONDO:0009323","xrefs":{"Monarch":{"xref_id":"0009323"}}}


id: GO:0018703
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2,4-dichlorophenoxyacetic acid + H+ + 2 e- = Cl- + 4-chlorophenoxyacetate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2,4-dichlorophenoxyacetate dehalogenase activity (obsolete GO:0018703)","termid":"GO:0018703"}


id: GO:0033690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of osteoblast proliferation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"regulation of osteoblast proliferation","termid":"GO:0033688"},{"relation_name":"positively_regulates","term_name":"osteoblast proliferation","termid":"GO:0033687"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of osteoblast proliferation","synonyms":[{"name":"activation of osteoblast proliferation","type":"narrow"},{"name":"stimulation of osteoblast proliferation","type":"narrow"},{"name":"up regulation of osteoblast proliferation","type":"exact"},{"name":"up-regulation of osteoblast proliferation","type":"exact"},{"name":"upregulation of osteoblast proliferation","type":"exact"}],"termid":"GO:0033690"}


id: GO:1903491
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a simvastatin stimulus. Simvastatin is a statin used as a cholesterol-lowering and anti-cardiovascular disease drug.","definition_xrefs":["GO_REF:0000071","GOC:sl","GOC:TermGenie","PMID:23100282"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to lipid","termid":"GO:0033993"},{"relation_name":"is_a","term_name":"response to statin","termid":"GO:0036273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to simvastatin","termid":"GO:1903491"}


id: GO:0051033
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of RNA, ribonucleic acid, from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleic acid transmembrane transporter activity","termid":"GO:0051032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"RNA transmembrane transporter activity","secondary_identifiers":["Reactome:R-HSA-203906"],"termid":"GO:0051033"}


id: PBO:0090882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudouridine synthase Cbf5","termid":"PBO:0090882"}


id: PBO:0080475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vault RNA 1-1","termid":"PBO:0080475"}


id: MONDO:0007182
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spinocerebellar ataxia type 3 (SCA3), also known as Machado-Joseph disease, is the most common subtype of type 1 autosomal dominant cerebellar ataxia (ADCA type 1), a neurodegenerative disorder, and is characterized by ataxia, external progressive ophthalmoplegia, and other neurological manifestations.","definition_xrefs":["Orphanet:98757"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Huntington disease-like syndrome","termid":"MONDO:0015548"},{"relation_name":"is_a","term_name":"autosomal dominant cerebellar ataxia type I","termid":"MONDO:0019792"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0005559","MONDO:0000426"],"is_obsolete":false,"name":"Machado-Joseph disease","secondary_identifiers":["DOID:1440","GARD:6801","OMIM:109150","UMLS:C0024408","MESH:D017827","ICD9:336.8","NANDO:1200041","NORD:1389","NCIT:C84830","SCTID:91952008","MEDGEN:9841"],"synonyms":[{"name":"Azorean disease","type":"exact"},{"name":"Azorean disease of the nervous system","type":"exact"},{"name":"Azorean neurologic disease","type":"related"},{"name":"MJD","type":"exact"},{"name":"Machado disease","type":"exact"},{"name":"Machado-Joseph disease","type":"exact"},{"name":"Nigro-spino-dentatal degeneration with nuclear ophthalmoplegia","type":"exact"},{"name":"Nigrospinodentatal Degeneration","type":"related"},{"name":"SCA3","type":"exact"},{"name":"Spinopontine atrophy","type":"related"},{"name":"autosomal dominant striatonigral degeneration","type":"exact"},{"name":"spinocerebellar ataxia 3","type":"exact"},{"name":"spinocerebellar ataxia type 3","type":"exact"},{"name":"spinocerebellar atrophy 3","type":"related"},{"name":"spinocerebellar atrophy type 3","type":"related"}],"termid":"MONDO:0007182","xrefs":{"Monarch":{"xref_id":"0007182"}}}


id: PR:Q9UTC3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA replication complex GINS protein PSF3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR22768:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication complex GINS protein psf3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC227.16c","secondary_identifiers":["UniProtKB:Q9UTC3"],"synonyms":[{"name":"SPAC227.16c","type":"related"},{"name":"Spom972h-GINS3","type":"exact"}],"termid":"PR:Q9UTC3"}


id: PBO:0086207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that associates with the INO80 chromatin remodeling complex; associates with the INO80 complex under low-salt conditions; essential for growth under anaerobic conditions; protein abundance increases in response to DNA replication stress","termid":"PBO:0086207"}


id: PBO:0090126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial calcium uniporter regulator","termid":"PBO:0090126"}


id: PBO:0080485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand factor A domain containing 5A","termid":"PBO:0080485"}


id: MOD:01767
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The protein modification reporter fragment produced by an Proteome Sciences TMT6plex-131 reagent acylated residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"TMT6plex-131 reporter+balance reagent acylated residue","termid":"MOD:01760"},{"relation_name":"is_a","term_name":"TMT6plex reporter fragment","termid":"MOD:01716"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMT6plex-131 reporter fragment","synonyms":[{"name":"2,6-dimethyl-1-methylidenepiperidinium","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"}],"termid":"MOD:01767"}


id: PBO:0080726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WT1 interacting protein","termid":"PBO:0080726"}


id: PBO:0067426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 545, pseudogene","termid":"PBO:0067426"}


id: PBO:0055642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3081","termid":"PBO:0055642"}


id: PBO:0090849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial tRNA N6-threonyl-carbamoyl-adenosine (t6A) Sua5","termid":"PBO:0090849"}


id: PBO:0063486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate dehydrogenase kinase 3","termid":"PBO:0063486"}


id: PBO:0030753
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_transcriptional_response_to_pheromone","termid":"PBO:0030753"}


id: PBO:0053428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 373","termid":"PBO:0053428"}


id: MONDO:0019874
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Distal trisomy 7p is a rare chromosomal anomaly syndrome, resulting from the partial duplication of the short arm of chromosome 7, with highly variable phenotype typically characterized by severe to profound psychomotor delay, intellectual disability, dysmorphic features (incl. dolichocephaly, microbrachycephaly, high and/or broad forehead, large anterior fontanel, hypertelorism, downslanting palpebral fissures, low-set, dysplastic ears, low, broad and prominent nasal bridge, abnormal palate, micro-/retrognathia), and hypotonia. Cardiovascular, gastrointestinal, skeletal and urogenital anomalies have commonly been reported.","definition_xrefs":["Orphanet:96074"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial duplication of the short arm of chromosome 7","termid":"MONDO:0016944"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"distal trisomy 7p","secondary_identifiers":["MEDGEN:1641655","SCTID:763276000","GARD:19307","UMLS:C4706364"],"synonyms":[{"name":"distal duplication 7p","type":"exact"},{"name":"distal trisomy type 7p","type":"exact"},{"name":"telomeric duplication 7p","type":"exact"},{"name":"trisomy 7pter","type":"exact"}],"termid":"MONDO:0019874","xrefs":{"Monarch":{"xref_id":"0019874"}}}


id: PBO:0038570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase","termid":"PBO:0038570"}


id: MONDO:0018909
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete legionellosis (obsolete MONDO:0018909)","termid":"MONDO:0018909","xrefs":{"Monarch":{"xref_id":"0018909"}}}


id: GO:1903638
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein insertion into mitochondrial outer membrane.","definition_xrefs":["PMID:16374546","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organelle organization","termid":"GO:0010638"},{"relation_name":"is_a","term_name":"positive regulation of intracellular protein transport","termid":"GO:0090316"},{"relation_name":"is_a","term_name":"regulation of protein insertion into mitochondrial outer membrane","termid":"GO:1903636"},{"relation_name":"is_a","term_name":"positive regulation of protein targeting to mitochondrion","termid":"GO:1903955"},{"relation_name":"is_a","term_name":"positive regulation of protein localization to membrane","termid":"GO:1905477"},{"relation_name":"positively_regulates","term_name":"protein insertion into mitochondrial outer membrane","termid":"GO:0045040"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0061024"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006605"},{"rel_name":"positively_regulates","termid":"GO:0007005"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0006605"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007005"}],"interesting_parent_ids":["GO:0007005","GO:0006605","GO:0008150","GO:0061024","GO:0006810"],"is_obsolete":false,"name":"positive regulation of protein insertion into mitochondrial outer membrane","synonyms":[{"name":"activation of mitochondrial outer membrane protein import","type":"narrow"},{"name":"activation of protein import into mitochondrial outer membrane","type":"narrow"},{"name":"activation of protein insertion into mitochondrial outer membrane","type":"narrow"},{"name":"activation of protein transport into mitochondrial outer membrane","type":"narrow"},{"name":"positive regulation of mitochondrial outer membrane protein import","type":"exact"},{"name":"positive regulation of protein import into mitochondrial outer membrane","type":"exact"},{"name":"positive regulation of protein transport into mitochondrial outer membrane","type":"exact"},{"name":"up regulation of mitochondrial outer membrane protein import","type":"exact"},{"name":"up regulation of protein import into mitochondrial outer membrane","type":"exact"},{"name":"up regulation of protein insertion into mitochondrial outer membrane","type":"exact"},{"name":"up regulation of protein transport into mitochondrial outer membrane","type":"exact"},{"name":"up-regulation of mitochondrial outer membrane protein import","type":"exact"},{"name":"up-regulation of protein import into mitochondrial outer membrane","type":"exact"},{"name":"up-regulation of protein insertion into mitochondrial outer membrane","type":"exact"},{"name":"up-regulation of protein transport into mitochondrial outer membrane","type":"exact"},{"name":"upregulation of mitochondrial outer membrane protein import","type":"exact"},{"name":"upregulation of protein import into mitochondrial outer membrane","type":"exact"},{"name":"upregulation of protein insertion into mitochondrial outer membrane","type":"exact"},{"name":"upregulation of protein transport into mitochondrial outer membrane","type":"exact"}],"termid":"GO:1903638"}


id: MONDO:1011067
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Urolithiasis that occurs in domestic guinea pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urolithiasis, non-human animal","termid":"MONDO:1010267"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urolithiasis, domestic guinea pig","secondary_identifiers":["OMIA:001033-10141"],"termid":"MONDO:1011067","xrefs":{"Monarch":{"xref_id":"1011067"}}}


id: MONDO:0023557
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infectious process affecting the vagina. Symptoms include pain and purulent discharge.","definition_xrefs":["NCIT:C84353"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vaginitis","termid":"MONDO:0002234"},{"relation_name":"is_a","term_name":"infectious disease","termid":"MONDO:0005550"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"infective vaginitis","secondary_identifiers":["icd11.foundation:1436361154","MEDGEN:140795","UMLS:C0404521","SCTID:237091009"],"synonyms":[{"name":"Infective vaginitis","type":"related"},{"name":"PV - Vaginal infection","type":"related"},{"name":"Vaginal Infection","type":"related"},{"name":"Vaginal infection","type":"related"},{"name":"vaginal infection","type":"exact"}],"termid":"MONDO:0023557","xrefs":{"Monarch":{"xref_id":"0023557"}}}


id: PBO:0081261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF30 antisense RNA 1","termid":"PBO:0081261"}


id: GO:0036307
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + adenine(2030) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(2030) in 23S rRNA.","definition_xrefs":["RHEA:43736","GOC:imk","PMID:22847818"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA (adenine-N6-)-methyltransferase activity","termid":"GO:0008988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140098","GO:0003824","GO:0016740","GO:0003674","GO:0016741"],"is_obsolete":false,"name":"23S rRNA (adenine(2030)-N(6))-methyltransferase activity","secondary_identifiers":["EC:2.1.1.266"],"termid":"GO:0036307"}


id: GO:0009594
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a nutrient stimulus is received by a cell and converted into a molecular signal.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nutrient","termid":"GO:0007584"},{"relation_name":"is_a","term_name":"detection of chemical stimulus","termid":"GO:0009593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of nutrient","synonyms":[{"name":"detection of nutrients","type":"exact"},{"name":"nutrient sensing","type":"related"},{"name":"perception of nutrients","type":"related"}],"termid":"GO:0009594"}


id: MONDO:0009427
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Infantile hypophosphatasia (I-HPP) is a very rare, severe form of hypophosphatasia characterized by infantile rickets without elevated serum alkaline phosphatase (ALP) activity and a wide range of clinical manifestations due to hypomineralization.","definition_xrefs":["Orphanet:247651"],"gene_count":0,"genotype_count":0,"name":"obsolete infantile hypophosphatasia (obsolete MONDO:0009427)","secondary_identifiers":["OMIM:241500","DOID:0110914","SCTID:55236002","ICD10CM:E83.3"],"synonyms":[{"name":"HOPS","type":"exact"},{"name":"hypophosphatasia, infantile","type":"related"},{"name":"hypophosphatasia, perinatal lethal","type":"related"},{"name":"infantile Rathburn disease","type":"exact"},{"name":"infantile phosphoethanolaminuria","type":"exact"},{"name":"obsolete infantile hypophosphatasia","type":"exact"}],"termid":"MONDO:0009427","xrefs":{"Monarch":{"xref_id":"0009427"}}}


id: PBO:0004038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Tgl1 (predicted)","termid":"PBO:0004038"}


id: PBO:0011448
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved in metzoa","termid":"PBO:0011448"}


id: PBO:0044538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"differentiation antagonizing non-protein coding RNA","termid":"PBO:0044538"}


id: GO:1902607
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of large conductance calcium-activated potassium channel activity.","definition_xrefs":["GO_REF:0000059","PMID:23407708","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of potassium ion transmembrane transporter activity","termid":"GO:1901017"},{"relation_name":"is_a","term_name":"negative regulation of cation channel activity","termid":"GO:2001258"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"negative regulation of large conductance calcium-activated potassium channel activity","synonyms":[{"name":"down regulation of BK KCa channels","type":"exact"},{"name":"down regulation of BK calcium-activated potassium channel activity","type":"exact"},{"name":"down regulation of BK channel activity","type":"related"},{"name":"down regulation of large conductance KCa channels","type":"exact"},{"name":"down regulation of large conductance calcium-activated potassium channel activity","type":"exact"},{"name":"down-regulation of BK KCa channels","type":"exact"},{"name":"down-regulation of BK calcium-activated potassium channel activity","type":"exact"},{"name":"down-regulation of BK channel activity","type":"related"},{"name":"down-regulation of large conductance KCa channels","type":"exact"},{"name":"down-regulation of large conductance calcium-activated potassium channel activity","type":"exact"},{"name":"downregulation of BK KCa channels","type":"exact"},{"name":"downregulation of BK calcium-activated potassium channel activity","type":"exact"},{"name":"downregulation of BK channel activity","type":"related"},{"name":"downregulation of large conductance KCa channels","type":"exact"},{"name":"downregulation of large conductance calcium-activated potassium channel activity","type":"exact"},{"name":"inhibition of BK KCa channels","type":"narrow"},{"name":"inhibition of BK calcium-activated potassium channel activity","type":"narrow"},{"name":"inhibition of BK channel activity","type":"related"},{"name":"inhibition of large conductance KCa channels","type":"narrow"},{"name":"inhibition of large conductance calcium-activated potassium channel activity","type":"narrow"},{"name":"negative regulation of BK KCa channels","type":"exact"},{"name":"negative regulation of BK calcium-activated potassium channel activity","type":"exact"},{"name":"negative regulation of BK channel activity","type":"related"},{"name":"negative regulation of large conductance KCa channels","type":"exact"}],"termid":"GO:1902607"}


id: GO:0016751
data:
  {"annotated_genes":["SJAG_03163"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77570],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004149"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a succinyl group to a sulfur atom on the acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-acyltransferase activity","termid":"GO:0016417"},{"relation_name":"is_a","term_name":"succinyltransferase activity","termid":"GO:0016748"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03163":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"S-succinyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0016751","terms_by_termid":{"GO:0004149":null}}


id: GO:0051671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism initiates the activity of the inactive enzyme autolysin in another organism. The autolysin enzyme belongs to, and is active in, the other organism.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete induction of autolysin activity in other organism (obsolete GO:0051671)","synonyms":[{"name":"activation of autolysin activity in another organism","type":"exact"},{"name":"activation of autolysis in other organism","type":"narrow"},{"name":"activation of autolytic activity in other organism","type":"narrow"},{"name":"induction of autolysin activity in another organism","type":"exact"},{"name":"induction of autolysis in other organism","type":"narrow"},{"name":"induction of autolytic activity in other organism","type":"narrow"},{"name":"positive regulation of autolysin activity in another organism","type":"broad"}],"termid":"GO:0051671"}


id: PBO:0030625
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_tyrosine_phosphorylation","termid":"PBO:0030625"}


id: PR:Q9Y7N3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- grx3 gene.","definition_xrefs":["UniProtKB:Q9Y7N3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monothiol glutaredoxin-3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1450.06c","synonyms":[{"name":"Spom972h-grx3","type":"exact"}],"termid":"PR:Q9Y7N3"}


id: GO:0003781
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete actin bundling activity (obsolete GO:0003781)","synonyms":[{"name":"actin bundling activity","type":"exact"}],"termid":"GO:0003781"}


id: MONDO:0010634
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"jaundice, familial obstructive, of infancy","secondary_identifiers":["MEDGEN:326992","UMLS:C1839927","OMIM:308600","MESH:C564118"],"synonyms":[{"name":"jaundice, familial obstructive, of infancy","type":"exact"}],"termid":"MONDO:0010634","xrefs":{"Monarch":{"xref_id":"0010634"}}}


id: PBO:0079991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 29","termid":"PBO:0079991"}


id: GO:0010496
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of substances between cells.","definition_xrefs":["GOC:dhl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport","termid":"GO:0006810"},{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"intercellular transport","secondary_identifiers":["GO:1902585"],"synonyms":[{"name":"single organism intercellular transport","type":"related"},{"name":"single-organism intercellular transport","type":"related"}],"termid":"GO:0010496"}


id: GO:0170039
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