# terms

id: PBO:0038341
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-realized_in_response_to","termid":"PBO:0038341"}


id: PBO:0079087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Tyr (anticodon GTA) 4-1","termid":"PBO:0079087"}


id: PBO:0050001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIRA interacting protein 3","termid":"PBO:0050001"}


id: MONDO:0006671
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections with bacteria of the genus bacteroides.","definition_xrefs":["MESH:D001442"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bacteroidaceae infectious disease","termid":"MONDO:0006705"},{"relation_name":"is_a","term_name":"anaerobic bacteria infectious disease","termid":"MONDO:0024389"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bacteroides infectious disease","secondary_identifiers":["MEDGEN:2164","UMLS:C0004669","EFO:1000832","SCTID:2918000","ICD9:041.84"],"synonyms":[{"name":"Bacteroides caused disease or disorder","type":"exact"},{"name":"Bacteroides disease or disorder","type":"exact"},{"name":"Bacteroides infection","type":"related"},{"name":"infection caused by Bacteroides","type":"related"},{"name":"infection due to Bacteroides","type":"exact"},{"name":"infection, Bacteroides","type":"related"},{"name":"infections, Bacteroides","type":"related"}],"termid":"MONDO:0006671","xrefs":{"Monarch":{"xref_id":"0006671"}}}


id: PBO:0042149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine ligand 8","termid":"PBO:0042149"}


id: GO:0035961
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of ergosterol biosynthesis by activating or increasing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["PMID:11533229","GOC:dgf"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of ergosterol biosynthetic process by positive regulation of transcription from RNA polymerase II promoter (obsolete GO:0035961)","synonyms":[{"name":"positive regulation of ergosterol anabolism by positive regulation of transcription from Pol II promoter","type":"exact"},{"name":"positive regulation of ergosterol anabolism by positive regulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"positive regulation of ergosterol anabolism by up regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of ergosterol anabolism by up-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of ergosterol anabolism by upregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of ergosterol biosynthesis by positive regulation of transcription from Pol II promoter","type":"exact"},{"name":"positive regulation of ergosterol biosynthesis by positive regulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"positive regulation of ergosterol biosynthesis by up regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of ergosterol biosynthesis by up-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of ergosterol biosynthesis by upregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of ergosterol biosynthetic process by activation of transcription from RNA polymerase II promoter","type":"related"},{"name":"positive regulation of ergosterol biosynthetic process by positive regulation of transcription from Pol II promoter","type":"related"},{"name":"positive regulation of ergosterol biosynthetic process by stimulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"positive regulation of ergosterol biosynthetic process by up regulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"positive regulation of ergosterol biosynthetic process by up-regulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"positive regulation of ergosterol biosynthetic process by upregulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"positive regulation of ergosterol formation by positive regulation of transcription from Pol II promoter","type":"exact"},{"name":"positive regulation of ergosterol formation by positive regulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"positive regulation of ergosterol formation by up regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of ergosterol formation by up-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of ergosterol formation by upregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of ergosterol synthesis by positive regulation of transcription from Pol II promoter","type":"exact"},{"name":"positive regulation of ergosterol synthesis by positive regulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"positive regulation of ergosterol synthesis by up regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of ergosterol synthesis by up-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of ergosterol synthesis by upregulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:0035961"}


id: GO:0050785
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with advanced glycation end-products and transmitting the signal to initiate a change in cell activity. Advanced glycation end-products (AGEs) form from a series of chemical reactions after an initial glycation event (a non-enzymatic reaction between reducing sugars and free amino groups of proteins).","definition_xrefs":["PMID:7592757","GOC:signaling","Wikipedia:RAGE_(receptor)","PMID:12707408","PMID:9224812","PMID:12453678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor activity","termid":"GO:0038023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"advanced glycation end-product receptor activity","synonyms":[{"name":"AGE receptor activity","type":"exact"},{"name":"RAGE activity","type":"exact"}],"termid":"GO:0050785"}


id: PBO:0069953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1246, pseudogene","termid":"PBO:0069953"}


id: RO:0002530
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x is immediately downstream of the sequence of y iff either (1) x and y have sequence units, and all units of x are downstream of all units of y, and x is sequentially adjacent to y, or (2) x and y are sequence units, in which case the immediately downstream relation is primitive and defined by context: for DNA bases, y would be adjacent and 5' to y","direct_ancestors":[{"relation_name":"is_a","term_name":"sequentially_adjacent_to","termid":"RO:0002515"},{"relation_name":"is_a","term_name":"is_downstream_of_sequence_of","termid":"RO:0002529"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_immediately_downstream_of_sequence_of","termid":"RO:0002530"}


id: PBO:0060646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor coactivator 5","termid":"PBO:0060646"}


id: GO:0070655
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regrowth of lost or destroyed mechanosensory epithelia.","definition_xrefs":["GOC:dsf","PMID:19381250"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory epithelium regeneration","termid":"GO:0070654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mechanosensory epithelium regeneration","termid":"GO:0070655"}


id: MONDO:0056805
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign granular cell tumor that involves the nerve.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benign granular cell tumor","termid":"MONDO:0003250"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign peripheral nerve granular cell tumor","secondary_identifiers":["UMLS:C1332530","MEDGEN:272363","NCIT:C5502"],"synonyms":[{"name":"benign granular cell neoplasm of peripheral nerve","type":"exact"},{"name":"benign granular cell neoplasm of the peripheral nerve","type":"exact"},{"name":"benign granular cell tumor of nerve","type":"exact"},{"name":"benign granular cell tumor of peripheral nerve","type":"exact"},{"name":"benign granular cell tumor of the peripheral nerve","type":"exact"},{"name":"benign granular cell tumour of nerve","type":"exact"},{"name":"benign granular cell tumour of peripheral nerve","type":"exact"},{"name":"benign granular cell tumour of the peripheral nerve","type":"exact"},{"name":"benign peripheral nerve granular cell neoplasm","type":"exact"},{"name":"benign peripheral nerve granular cell tumor","type":"exact"},{"name":"nerve benign granular cell tumor","type":"exact"},{"name":"nerve benign granular cell tumour","type":"exact"}],"termid":"MONDO:0056805","xrefs":{"Monarch":{"xref_id":"0056805"}}}


id: PBO:0027690
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_vegetative_cell_enlarged_around_nucleus","termid":"PBO:0027690"}


id: PBO:0060754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B3 pseudogene 4","termid":"PBO:0060754"}


id: PR:000027619
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A transcription factor zip1 phosphorylated form in Schizosaccharomyces pombe. Example: UniProtKB:Q10424-1, MOD:00696.","definition_xrefs":["PomBase:MAH","PMID:15660136"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription factor zip1","termid":"PR:000027614"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zip1/PhosRes+","pombase_gene_id":"SPAC25G10.03","synonyms":[{"name":"PomBase_original_PRO_term_name: transcription factor zip1 phosphorylated form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-zip1/PhosRes+","type":"exact"},{"name":"zip1/PhosRes+","type":"exact"}],"termid":"PR:000027619"}


id: MOD:00792
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes one (2)H deuterium atom for one (1)H protium atom.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deuterium substituted residue","termid":"MOD:00786"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deuterium monosubstituted residue","synonyms":[{"name":"D(H)1Res","type":"exact"}],"termid":"MOD:00792"}


id: PBO:0035897
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_acetylation_during_vegetative_growth","termid":"PBO:0035897"}


id: PBO:0073049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small cysteine and glycine repeat containing 7","termid":"PBO:0073049"}


id: PBO:0076118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntaxin binding protein 2","termid":"PBO:0076118"}


id: PBO:0080826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YAE1 divergent transcript","termid":"PBO:0080826"}


id: PBO:0081211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger matrin-type 1","termid":"PBO:0081211"}


id: PBO:0081581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 510","termid":"PBO:0081581"}


id: PBO:0066600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ras homolog family member Q pseudogene 3","termid":"PBO:0066600"}


id: PBO:0062097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily A member 47","termid":"PBO:0062097"}


id: FYPO:0007829
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the site of cell division begins earlier than normal.","definition_xrefs":["PMID:34133210","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell division site","termid":"FYPO:0001401"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"premature protein localization to cell division site","synonyms":[{"name":"advanced protein localization to cell division site","type":"exact"},{"name":"precocious protein localization to cell division site","type":"exact"},{"name":"premature protein localisation to cell division site","type":"exact"},{"name":"premature protein localization to cell division site during mitotic cell cycle","type":"related"},{"name":"premature protein localization to cell division site during vegetative growth","type":"exact"},{"name":"premature protein recruitment to cell division site","type":"related"}],"termid":"FYPO:0007829"}


id: MONDO:0012290
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"CEDNIK syndrome is a neurocutaneaous syndrome characterized by severe developmental abnormalities of the nervous system and aberrant differentiation of the epidermis.","definition_xrefs":["Orphanet:66631"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"diffuse palmoplantar keratoderma","termid":"MONDO:0017666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"CEDNIK syndrome","secondary_identifiers":["MESH:C537943","GARD:9940","UMLS:C1836033","SCTID:722385008","OMIM:609528","DOID:0060337","MEDGEN:332113"],"synonyms":[{"name":"CEDNIK syndrome","type":"exact"},{"name":"cerebral dysgenesis, neuropathy, ichthyosis and keratoderma syndrome","type":"exact"},{"name":"cerebral dysgenesis, neuropathy, ichthyosis, and palmoplantar keratoderma syndrome","type":"related"},{"name":"cerebral dysgenesis-neuropathy-ichthyosis-palmoplantar keratoderma syndrome","type":"exact"}],"termid":"MONDO:0012290","xrefs":{"Monarch":{"xref_id":"0012290"}}}


id: GO:0061475
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of coupling valine to valyl-tRNA in the cytosol, catalyzed by valyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"valyl-tRNA aminoacylation","termid":"GO:0006438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0010467","GO:0006399"],"is_obsolete":false,"name":"cytosolic valyl-tRNA aminoacylation","termid":"GO:0061475"}


id: FYPO:0001904
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cytokinesis phenotype observed in the vegetative growth phase of the life cycle in which the contractile ring collapses or disassembles upon initiation of contraction during anaphase B. Septum formation typically does not occur in cells in which the contractile ring has collapsed.","definition_xrefs":["PMID:22174761","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytokinesis during vegetative growth","termid":"FYPO:0000032"},{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring organization","termid":"FYPO:0004738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000032"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0004803","FYPO:0005447","FYPO:0000032"],"is_obsolete":false,"name":"premature actomyosin contractile ring disassembly","synonyms":[{"name":"abnormal contractile ring contraction with contractile ring collapse","type":"exact"},{"name":"actomyosin contractile ring collapse","type":"exact"},{"name":"actomyosin contractile ring collapse upon contraction","type":"exact"},{"name":"actomyosin contractile ring disassembly before septation","type":"exact"},{"name":"advanced actomyosin contractile ring disassembly","type":"exact"},{"name":"cytokinesis defects, collapse of the actinomyosin ring","type":"related"},{"name":"premature actomyosin contractile ring disassembly during mitotic cell cycle","type":"related"},{"name":"premature actomyosin contractile ring disassembly during vegetative growth","type":"exact"},{"name":"premature cytokinetic contractile ring disassembly","type":"exact"},{"name":"premature mitotic contractile ring disassembly","type":"exact"},{"name":"unstable actomyosin contractile ring","type":"related"},{"name":"unstable actomyosin ring","type":"related"}],"termid":"FYPO:0001904"}


id: MONDO:0007427
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deafness with anhidrotic ectodermal dysplasia","secondary_identifiers":["UMLS:C1852279","OMIM:125050","MESH:C565119","MEDGEN:342202"],"synonyms":[{"name":"deafness with anhidrotic ectodermal dysplasia","type":"exact"}],"termid":"MONDO:0007427","xrefs":{"Monarch":{"xref_id":"0007427"}}}


id: MOD:01988
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-cysteine residue and an L-threonine residue by a thioether bond to form 2-(S-L-cysteinyl)-L-threonine.","definition_xrefs":["RESID:AA0625","PubMed:21526839"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-carbon thioether crosslinked residues","termid":"MOD:01992"},{"relation_name":"is_a","term_name":"crosslinked L-threonine residue","termid":"MOD:02056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"2-(L-cystein-S-yl)-L-threonine","synonyms":[{"name":"(2R,3R)-2-amino-2-[(2R)-2-amino-2-carboxyethyl]sulfanyl-3-hydroxybutanoic acid","type":"exact"},{"name":"(2R,5R,6R)-2,5-diamino-5-carboxy-6-hydroxy-4-thiaheptanoic acid","type":"exact"},{"name":"alpha-(L-cystein-S-yl)-L-threonine","type":"exact"}],"termid":"MOD:01988"}


id: GO:0097046
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Regulation of DNA replication by a mechanism that allows a DNA replication fork to progress beyond a termination site, which is a region containing fork pausing elements that influence the progression and merging of DNA replication forks.","definition_xrefs":["GOC:bf","GOC:mcc","PMID:20797631","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA replication termination","termid":"GO:2000621"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006260","GO:0006259"],"is_obsolete":false,"name":"replication fork progression beyond termination site","termid":"GO:0097046"}


id: GO:0002038
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of L-glutamate import into a cell.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of L-glutamate import across plasma membrane","termid":"GO:0002036"},{"relation_name":"is_a","term_name":"positive regulation of organic acid transport","termid":"GO:0032892"},{"relation_name":"is_a","term_name":"positive regulation of transmembrane transport","termid":"GO:0034764"},{"relation_name":"is_a","term_name":"positive regulation of amino acid transport","termid":"GO:0051957"},{"relation_name":"positively_regulates","term_name":"L-glutamate import across plasma membrane","termid":"GO:0098712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"positive regulation of L-glutamate import across plasma membrane","secondary_identifiers":["GO:1900922"],"synonyms":[{"name":"activation of L-glutamate import","type":"narrow"},{"name":"activation of L-glutamate transport","type":"narrow"},{"name":"activation of L-glutamate uptake","type":"narrow"},{"name":"positive regulation of L-glutamate import","type":"broad"},{"name":"positive regulation of L-glutamate transport","type":"broad"},{"name":"positive regulation of L-glutamate uptake","type":"related"},{"name":"stimulation of L-glutamate transport","type":"narrow"},{"name":"up regulation of L-glutamate import","type":"exact"},{"name":"up regulation of L-glutamate transport","type":"broad"},{"name":"up regulation of L-glutamate uptake","type":"related"},{"name":"up-regulation of L-glutamate import","type":"exact"},{"name":"up-regulation of L-glutamate transport","type":"exact"},{"name":"up-regulation of L-glutamate uptake","type":"related"},{"name":"upregulation of L-glutamate import","type":"exact"},{"name":"upregulation of L-glutamate transport","type":"broad"},{"name":"upregulation of L-glutamate uptake","type":"related"}],"termid":"GO:0002038"}


id: PBO:0059419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S36 pseudogene 5","termid":"PBO:0059419"}


id: GO:0009620
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to other organism","termid":"GO:0051707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to fungus","secondary_identifiers":["GO:0009621"],"synonyms":[{"name":"response to fungi","type":"exact"}],"termid":"GO:0009620"}


id: GO:0001998
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The decrease in blood vessel diameter as a result of the release of angiotensin into the blood stream.","definition_xrefs":["GOC:mtg_cardio","GOC:pr","ISBN:0721643949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of systemic arterial blood pressure","termid":"GO:0003084"},{"relation_name":"is_a","term_name":"vasoconstriction","termid":"GO:0042310"},{"relation_name":"part_of","term_name":"maintenance of blood vessel diameter homeostasis by renin-angiotensin","termid":"GO:0002034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"angiotensin-mediated vasoconstriction involved in regulation of systemic arterial blood pressure","synonyms":[{"name":"angiotensin mediated vasoconstriction during blood pressure control","type":"related"},{"name":"angiotensin mediated vasoconstriction during blood pressure regulation","type":"exact"},{"name":"angiotensin mediated vasoconstriction during control of blood pressure","type":"related"},{"name":"angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure","type":"exact"}],"termid":"GO:0001998"}


id: MONDO:0012687
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"familial cavitary optic disk anomaly","secondary_identifiers":["UMLS:C1969063","GARD:17822","Orphanet:464760","MEDGEN:370593","MESH:C566924","OMIM:611543"],"synonyms":[{"name":"CODA","type":"related"},{"name":"cavitary optic DISC anomalies","type":"related"},{"name":"familial CODA","type":"exact"}],"termid":"MONDO:0012687","xrefs":{"Monarch":{"xref_id":"0012687"}}}


id: PBO:0071565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 31","termid":"PBO:0071565"}


id: PBO:0111846
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-ranBP","termid":"PBO:0111846"}


id: MONDO:0006281
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A morphologic variant of lung adenocarcinoma characterized by the presence of signet ring cells.","definition_xrefs":["NCIT:C45514"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lung adenocarcinoma","termid":"MONDO:0005061"},{"relation_name":"is_a","term_name":"signet ring cell carcinoma","termid":"MONDO:0005092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"lung signet ring cell carcinoma","secondary_identifiers":["UMLS:C1708782","MEDGEN:310950","SCTID:707407001","EFO:1000338","DOID:0080305","ICD9:162.9"],"synonyms":[{"name":"lung signet ring cell carcinoma","type":"exact"},{"name":"signet ring lung adenocarcinoma","type":"related"}],"termid":"MONDO:0006281","xrefs":{"Monarch":{"xref_id":"0006281"}}}


id: GO:0047110
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: CoA + NAD+ + phenylglyoxylate = benzoyl-CoA + CO2 + NADH.","definition_xrefs":["RHEA:10372"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"phenylglyoxylate dehydrogenase (acylating) activity","secondary_identifiers":["KEGG_REACTION:R02450","MetaCyc:1.2.1.58-RXN","EC:1.2.1.58"],"synonyms":[{"name":"phenylglyoxylate:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0047110"}


id: PATO:0001715
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A diameter which is relatively small.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"decreased length","termid":"PATO:0000574"},{"relation_name":"is_a","term_name":"diameter","termid":"PATO:0001334"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased diameter","termid":"PATO:0001715"}


id: MONDO:0018765
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal disorder","termid":"MONDO:0005020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"cryptogenic multifocal ulcerous stenosing enteritis","secondary_identifiers":["SCTID:722849002","icd11.foundation:1401898155","GARD:21945","MEDGEN:927932","Orphanet:468635","UMLS:C4302263"],"synonyms":[{"name":"CMUSE","type":"exact"}],"termid":"MONDO:0018765","xrefs":{"Monarch":{"xref_id":"0018765"}}}


id: PBO:0083712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein involved in regulation of OLE1 transcription; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting; SPT23 has a paralog, MGA2, that arose from the whole genome duplication","termid":"PBO:0083712"}


id: MONDO:0018525
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm arising from the exocrine pancreas. It occurs predominantly in young women. It is characterized by the presence of extensive necrosis and hemorrhage and is composed of polyhedral cells forming solid and pseudopapillary patterns. There is morphologic evidence of perineural invasion, vascular invasion, or extensive invasion into the surrounding tissues.","definition_xrefs":["NCIT:C5728"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exocrine pancreatic carcinoma","termid":"MONDO:0005192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"solid pseudopapillary carcinoma of pancreas","secondary_identifiers":["MEDGEN:236832","DOID:6827","Orphanet:424065","GARD:21780","ICDO:8452/3","UMLS:C1336029"],"synonyms":[{"name":"pancreatic solid pseudopapillary carcinoma","type":"exact"},{"name":"solid pseudopapillary carcinoma of pancreas","type":"exact"},{"name":"solid pseudopapillary carcinoma of the pancreas","type":"exact"},{"name":"solid pseudopapillary neoplasm of the pancreas","type":"broad"}],"termid":"MONDO:0018525","xrefs":{"Monarch":{"xref_id":"0018525"}}}


id: MONDO:0002874
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A germ cell tumor that arises from the testis and is characterized by the presence of one histologic component. This category includes seminoma, teratoma, embryonal carcinoma, yolk sac tumor, and trophoblastic tumor.","definition_xrefs":["NCIT:C39915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"testicular germ cell tumor","termid":"MONDO:0010108"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testicular pure germ cell tumor","secondary_identifiers":["DOID:4087","MEDGEN:308089","UMLS:C1514608"],"synonyms":[{"name":"testicular Pure germ cell tumor","type":"exact"},{"name":"testicular Pure germ cell tumour","type":"exact"}],"termid":"MONDO:0002874","xrefs":{"Monarch":{"xref_id":"0002874"}}}


id: MONDO:0958259
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare group of closed spinal dysraphisms characterized by the presence of a stalk connecting the skin to the underlying spinal cord. The stalk contains variable combinations of non-functional neural tissue, fibrous mesenchymal tissue, and dermal/epidermal elements.","definition_xrefs":["Orphanet:645193"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spina bifida occulta","termid":"MONDO:0000859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"dysraphism with stalk","secondary_identifiers":["MEDGEN:1853160","UMLS:C5816733"],"termid":"MONDO:0958259","xrefs":{"Monarch":{"xref_id":"0958259"}}}


id: GO:0038067
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: protein + ATP = protein phosphate + ADP by a mitogen-activated protein kinase, as part of a MAPK signaling cascade that contributes to cell wall organization or biogenesis.","definition_xrefs":["GOC:signaling"],"gene_count":0,"genotype_count":0,"name":"obsolete MAP kinase activity involved in cell wall organization or biogenesis (obsolete GO:0038067)","synonyms":[{"name":"MAP kinase activity involved in cell wall biogenesis","type":"narrow"},{"name":"MAP kinase activity involved in cell wall integrity","type":"related"},{"name":"MAPK activity involved in cell wall biogenesis","type":"narrow"}],"termid":"GO:0038067"}


id: MONDO:0017411
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Neonatal inflammatory skin and bowel disease is a rare, life-threatening, autoinflammatory syndrome with immune deficiency disorder characterized by early-onset, life-long inflammation, affecting the skin and bowel, associated with recurrent infections. Patients present perioral and perianal psoriasiform erythema and papular eruption with pustules, failure to thrive associated with chronic malabsorptive diarrhea, intercurrent gastrointestinal infections and feeding troubles, as well as absent, short or broken hair and trichomegaly. Recurrent cutaneous and pulmonary infections lead to recurrent blepharitis, otitis externa and bronchiolitis.","definition_xrefs":["Orphanet:294023"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflammatory bowel disease","termid":"MONDO:0005265"},{"relation_name":"is_a","term_name":"epidermal disease","termid":"MONDO:0019268"},{"relation_name":"is_a","term_name":"autoinflammatory syndrome","termid":"MONDO:0019751"},{"relation_name":"is_a","term_name":"hereditary disorder of connective tissue","termid":"MONDO:0023603"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0005046","MONDO:0005093"],"is_obsolete":false,"name":"neonatal inflammatory skin and bowel disease","secondary_identifiers":["GARD:17355","MEDGEN:1648296","OMIMPS:614328","UMLS:C4751120"],"synonyms":[{"name":"inflammatory skin and bowel disease, neonatal","type":"exact"}],"termid":"MONDO:0017411","xrefs":{"Monarch":{"xref_id":"0017411"}}}


id: MONDO:0004986
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from epithelial cells of the urinary bladder","direct_ancestors":[{"relation_name":"is_a","term_name":"urinary bladder cancer","termid":"MONDO:0001187"},{"relation_name":"is_a","term_name":"carcinoma","termid":"MONDO:0004993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"urinary bladder carcinoma","secondary_identifiers":["DOID:4007","UMLS:C0699885","MEDGEN:147071","HP:0002862","NCIT:C4912","SCTID:255108000"],"synonyms":[{"name":"bladder cancer","type":"broad"},{"name":"bladder carcinoma","type":"exact"},{"name":"cancer of bladder","type":"broad"},{"name":"cancer of the bladder","type":"broad"},{"name":"cancer of the urinary bladder","type":"broad"},{"name":"cancer of urinary bladder","type":"broad"},{"name":"carcinoma bladder","type":"exact"},{"name":"carcinoma of bladder","type":"exact"},{"name":"carcinoma of the bladder","type":"exact"},{"name":"carcinoma of the urinary bladder","type":"exact"},{"name":"carcinoma of urinary bladder","type":"exact"},{"name":"urinary bladder cancer","type":"broad"},{"name":"urinary bladder carcinoma","type":"exact"}],"termid":"MONDO:0004986","xrefs":{"Monarch":{"xref_id":"0004986"}}}


id: PBO:0073461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"surfactant protein B","termid":"PBO:0073461"}


id: MONDO:0002658
data:
  {"annotated_genes":["SJAG_03677"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88982],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014937"}]},"cv_name":"mondo","definition":"A malignant neoplasm involving the iris.","direct_ancestors":[{"relation_name":"is_a","term_name":"uveal cancer","termid":"MONDO:0002659"},{"relation_name":"is_a","term_name":"iris neoplasm","termid":"MONDO:0021224"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03677":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0004992"],"is_obsolete":false,"name":"iris cancer","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NCIT:C4554","MEDGEN:91103","DOID:3478","UMLS:C0346372","SCTID:188264002"],"synonyms":[{"name":"cancer of iris","type":"exact"},{"name":"iris cancer","type":"exact"},{"name":"malignant iris neoplasm","type":"exact"},{"name":"malignant iris tumor","type":"exact"},{"name":"malignant iris tumour","type":"exact"},{"name":"malignant neoplasm of iris","type":"exact"},{"name":"malignant neoplasm of the iris","type":"exact"},{"name":"malignant tumor of iris","type":"exact"},{"name":"malignant tumor of the iris","type":"exact"},{"name":"malignant tumour of iris","type":"exact"},{"name":"malignant tumour of the iris","type":"exact"},{"name":"tumor of the iris","type":"broad"},{"name":"tumour of the iris","type":"broad"}],"termid":"MONDO:0002658","terms_by_termid":{"MONDO:0014937":null},"xrefs":{"Monarch":{"xref_id":"0002658"}}}


id: MONDO:0008689
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial hemolytic anemia","termid":"MONDO:0003689"},{"relation_name":"is_a","term_name":"dehydrated hereditary stomatocytosis","termid":"MONDO:0017910"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0002280"],"is_obsolete":false,"name":"dehydrated hereditary stomatocytosis with or without pseudohyperkalemia and/or perinatal edema","secondary_identifiers":["UMLS:C4551512","DOID:0111576","GARD:15126","MEDGEN:1638271","OMIM:194380"],"synonyms":[{"name":"DEHYDRATED hereditary stomatocytosis 1 with or without pseudohyperkalemia and/OR perinatal edema","type":"related"},{"name":"DEHYDRATED hereditary stomatocytosis 1 with or without pseudohyperkalemia and/OR perinatal oedema","type":"related"},{"name":"DEHYDRATED hereditary stomatocytosis with or without pseudohyperkalemia and/or perinatal edema","type":"related"},{"name":"DEHYDRATED hereditary stomatocytosis with or without pseudohyperkalemia and/or perinatal oedema","type":"related"},{"name":"DHS","type":"related"},{"name":"DHS1","type":"related"},{"name":"Dehydrated hereditary stomatocytosis 1 with or without pseudohyperkalemia and/Or perinatal edema","type":"related"},{"name":"Dehydrated hereditary stomatocytosis 1 with or without pseudohyperkalemia and/Or perinatal oedema","type":"related"},{"name":"Dehydrated hereditary stomatocytosis pseudohyperkalemia and perinatal edema","type":"related"},{"name":"Dehydrated hereditary stomatocytosis pseudohyperkalemia and perinatal oedema","type":"related"},{"name":"Desiccytosis, hereditary","type":"related"},{"name":"dehydrated hereditary stomatocytosis","type":"related"},{"name":"dehydrated hereditary stomatocytosis with or without pseudohyperkalemia and/or perinatal edema","type":"exact"},{"name":"pseudohyperkalemia Edinburgh","type":"related"},{"name":"pseudohyperkalemia, familial, 1, due to Red cell leak","type":"related"},{"name":"xerocytosis, hereditary","type":"related"}],"termid":"MONDO:0008689","xrefs":{"Monarch":{"xref_id":"0008689"}}}


id: GO:1905751
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of endosome to plasma membrane protein transport.","definition_xrefs":["GOC:TermGenie","PMID:22869721","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of intracellular protein transport","termid":"GO:0090316"},{"relation_name":"is_a","term_name":"positive regulation of protein localization to plasma membrane","termid":"GO:1903078"},{"relation_name":"is_a","term_name":"regulation of endosome to plasma membrane protein transport","termid":"GO:1905749"},{"relation_name":"is_a","term_name":"positive regulation of endocytic recycling","termid":"GO:2001137"},{"relation_name":"positively_regulates","term_name":"endosome to plasma membrane protein transport","termid":"GO:0099638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"positive regulation of endosome to plasma membrane protein transport","synonyms":[{"name":"activation of endosome to plasma membrane protein transport","type":"narrow"},{"name":"up regulation of endosome to plasma membrane protein transport","type":"exact"},{"name":"up-regulation of endosome to plasma membrane protein transport","type":"exact"},{"name":"upregulation of endosome to plasma membrane protein transport","type":"exact"}],"termid":"GO:1905751"}


id: PBO:0064227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase C gamma 1","termid":"PBO:0064227"}


id: GO:0005092
data:
  {"annotated_genes":["SJAG_02063","SJAG_02390","SJAG_03361","SJAG_02422","SJAG_02831"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70313,73759],"is_not":false,"summary":null,"term":"GO:0005092"},{"annotations":[77870],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005093"},{"annotations":[112651,77061],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005094"}]},"cv_name":"molecular_function","definition":"Prevents the dissociation of GDP from a GTPase, thereby preventing GTP from binding.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GTPase regulator activity","termid":"GO:0030695"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02063":null,"SJAG_02390":null,"SJAG_02422":null,"SJAG_02831":null,"SJAG_03361":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0098772","GO:0003674","GO:0030234"],"is_obsolete":false,"name":"GDP-dissociation inhibitor activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"GDI","type":"exact"}],"termid":"GO:0005092","terms_by_termid":{"GO:0005092":null,"GO:0005093":null,"GO:0005094":null}}


id: PBO:0085206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Outer mitochondrial membrane GTPase, subunit of the ERMES complex; potential regulatory subunit of the ERMES complex that links the ER to mitochondria and may promote inter-organellar calcium and phospholipid exchange as well as coordinating mitochondrial DNA replication and growth; cells lacking Gem1p contain collapsed, globular, or grape-like mitochondria; ortholog of metazoan Miro GTPases","termid":"PBO:0085206"}


id: PBO:0052522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 35","termid":"PBO:0052522"}


id: PBO:0040379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase peripheral stalk subunit OSCP","termid":"PBO:0040379"}


id: GO:0032388
data:
  {"annotated_genes":["SJAG_04597","SJAG_03048","SJAG_04464","SJAG_04312","SJAG_03453","SJAG_01805","SJAG_02592","SJAG_01245"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96226],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902854"},{"annotations":[112865,102258,95619,103670],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046827"},{"annotations":[96184,104205,92660],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042307"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of substances within cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular transport","termid":"GO:0032386"},{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"positively_regulates","term_name":"intracellular transport","termid":"GO:0046907"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01245":null,"SJAG_01805":null,"SJAG_02592":null,"SJAG_03048":null,"SJAG_03453":null,"SJAG_04312":null,"SJAG_04464":null,"SJAG_04597":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of intracellular transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of intracellular transport","type":"narrow"},{"name":"stimulation of intracellular transport","type":"narrow"},{"name":"up regulation of intracellular transport","type":"exact"},{"name":"up-regulation of intracellular transport","type":"exact"},{"name":"upregulation of intracellular transport","type":"exact"}],"termid":"GO:0032388","terms_by_termid":{"GO:0042307":null,"GO:0046827":null,"GO:1902854":null}}


id: FYPO:0001866
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of adenylyl cyclase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000654","FYPO:0000652"],"is_obsolete":false,"name":"normal adenylyl cyclase activity","synonyms":[{"name":"normal adenylate cyclase activity","type":"exact"}],"termid":"FYPO:0001866"}


id: PR:O74534
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A sec1 family domain-containing protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11679:SF2","PRO:DNx","OMA:SCHPO04874"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein sly1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC74.01","secondary_identifiers":["UniProtKB:O74534"],"synonyms":[{"name":"Spom972h-SCFD1","type":"exact"}],"termid":"PR:O74534"}


id: MONDO:0005403
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete neonatal systemic lupus erthematosus (obsolete MONDO:0005403)","termid":"MONDO:0005403","xrefs":{"Monarch":{"xref_id":"0005403"}}}


id: PBO:0044161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTDSPL2 pseudogene 1","termid":"PBO:0044161"}


id: GO:0010987
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of high-density lipoprotein particle clearance. High-density lipoprotein particle clearance is the process in which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of high-density lipoprotein particle clearance","termid":"GO:0010982"},{"relation_name":"is_a","term_name":"negative regulation of lipoprotein particle clearance","termid":"GO:0010985"},{"relation_name":"negatively_regulates","term_name":"high-density lipoprotein particle clearance","termid":"GO:0034384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of high-density lipoprotein particle clearance","termid":"GO:0010987"}


id: MONDO:0012807
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A basal subtype of epidermolysis bullosa simplex (EBS) characterized by generalized severe blistering with widespread congenital absence of skin and pyloric atresia.","definition_xrefs":["Orphanet:158684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermolysis bullosa simplex","termid":"MONDO:0017610"},{"relation_name":"is_a","term_name":"PLEC-related muscular dystrophy-epidermolysis bullosa simplex spectrum disorder","termid":"MONDO:1060109"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"epidermolysis bullosa simplex 5C, with pyloric atresia","secondary_identifiers":["MEDGEN:436922","MESH:C567408","OMIM:612138","SCTID:716701004","GARD:16991","UMLS:C2677349"],"synonyms":[{"name":"EBS with pyloric atresia","type":"related"},{"name":"EBS-PA","type":"exact"},{"name":"EBSPA","type":"related"},{"name":"epidermolysis bullosa simplex 5C, with pyloric atresia","type":"exact"},{"name":"epidermolysis bullosa simplex with pyloric atresia","type":"exact"}],"termid":"MONDO:0012807","xrefs":{"Monarch":{"xref_id":"0012807"}}}


id: MONDO:1011163
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Osteoarthritis that occurs in pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteoarthritis, non-human animal","termid":"MONDO:1010297"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteoarthritis, pig","secondary_identifiers":["OMIA:000747-9823"],"termid":"MONDO:1011163","xrefs":{"Monarch":{"xref_id":"1011163"}}}


id: MONDO:0011820
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scoliosis, isolated, susceptibility to, 2","secondary_identifiers":["OMIM:607354","UMLS:C1846366","MEDGEN:375871"],"synonyms":[{"name":"IS2","type":"exact"},{"name":"scoliosis, idiopathic 2","type":"exact"},{"name":"scoliosis, isolated, susceptibility to, 2","type":"exact"}],"termid":"MONDO:0011820","xrefs":{"Monarch":{"xref_id":"0011820"}}}


id: MONDO:0020645
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant form of osteopetrosis (disease).","definition_xrefs":["MONDO:patterns/autosomal_dominant"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"osteopetrosis","termid":"MONDO:0017198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"autosomal dominant osteopetrosis","secondary_identifiers":["NCIT:C129732","MEDGEN:1378401","OMIMPS:607634","UMLS:C4272579"],"synonyms":[{"name":"OPTA","type":"exact"},{"name":"autosomal dominant osteopetrosis (disease)","type":"exact"},{"name":"osteopetrosis (disease), autosomal dominant","type":"exact"}],"termid":"MONDO:0020645","xrefs":{"Monarch":{"xref_id":"0020645"}}}


id: GO:0044324
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription that contributes to the specification of the anterior/posterior axis.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription involved in anterior/posterior axis specification (obsolete GO:0044324)","termid":"GO:0044324"}


id: GO:0098036
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The encapsulation of the viral DNA genome within the capsid, which proceeds via cleavage of the viral DNA at specific sites to produce 3' protruding ends.","definition_xrefs":["GOC:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral DNA genome packaging via site-specific sequence recognition","termid":"GO:0098035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral DNA genome packaging, 3' extended cos packaging","termid":"GO:0098036"}


id: PBO:0058346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4719","termid":"PBO:0058346"}


id: PBO:0046856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid desaturase 6","termid":"PBO:0046856"}


id: GO:0009293
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A type of horizontal gene transfer in which genetic material is introduced into a cell mediated by a virus.","definition_xrefs":["PMID:33597173","PMID:18265289"],"direct_ancestors":[{"relation_name":"is_a","term_name":"horizontal gene transfer","termid":"GO:0009292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"transduction","secondary_identifiers":["Wikipedia:Transduction_(genetics)"],"termid":"GO:0009293"}


id: GO:0002254
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A series of reactions that takes place outside the cell that occur as a result of by-products of tissue damage, including collagen, cartilage, and basement membrane. The ultimate product of the kinin cascade include kallidin and bradykinin, agents known to induce smooth muscle contraction, vasoconstriction, and increased vascular permeability.","definition_xrefs":["ISBN:0721601871","GOC:jal","PMID:11842287","PMID:14501145"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute inflammatory response","termid":"GO:0002526"},{"relation_name":"is_a","term_name":"protein activation cascade","termid":"GO:0072376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0051604","GO:0010467"],"is_obsolete":false,"name":"kinin cascade","termid":"GO:0002254"}


id: PBO:0059844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like","termid":"PBO:0059844"}


id: PR:O13905
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC22A12.14c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13905"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BSD domain-containing protein C22A12.14c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22A12.14c","synonyms":[{"name":"Spom972h-SPAC22A12.14c","type":"exact"}],"termid":"PR:O13905"}


id: MONDO:0008068
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete navicular bone, accessory (obsolete MONDO:0008068)","secondary_identifiers":["MESH:C536002","OMIM:161600"],"synonyms":[{"name":"navicular bone, accessory","type":"exact"}],"termid":"MONDO:0008068","xrefs":{"Monarch":{"xref_id":"0008068"}}}


id: GO:0006505
data:
  {"annotated_genes":["SJAG_03066","SJAG_03878","SJAG_03506","SJAG_04165","SJAG_04337","SJAG_03801","SJAG_04119","SJAG_04975","SJAG_01570","SJAG_00068","SJAG_05327","SJAG_01860","SJAG_06383","SJAG_05278","SJAG_03115","SJAG_01416","SJAG_04881","SJAG_00506","SJAG_01227","SJAG_04924","SJAG_00831","SJAG_06425","SJAG_02913","SJAG_00295","SJAG_02776","SJAG_03292","SJAG_03672","SJAG_02523","SJAG_02488","SJAG_00846","SJAG_02804"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80020,74881,79211,79641,74604,76707,77244,94809,105528,78165,105590,58592,78901,79384,78117,73629,77228,89244,71561,75198,58179,64535,61271,91369,63415,58431,79222,79414,64328,58606],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006506"},{"annotations":[75488],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006676"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving glycosylphosphatidylinositol anchors, molecular mechanisms for attaching membrane proteins to the lipid bilayer of cell membranes. Structurally they consist of a molecule of phosphatidylinositol to which is linked, via the C-6 hydroxyl of the inositol, a carbohydrate chain. This chain is in turn linked to the protein through an ethanolamine phosphate group, the amino group of which is in amide linkage with the C-terminal carboxyl of the protein chain, the phosphate group being esterified to the C-6 hydroxyl of the terminal mannose of the core carbohydrate chain.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycolipid metabolic process","termid":"GO:0006664"},{"relation_name":"is_a","term_name":"phosphatidylinositol metabolic process","termid":"GO:0046488"}],"gene_count":31,"genes_by_uniquename":{"SJAG_00068":null,"SJAG_00295":null,"SJAG_00506":null,"SJAG_00831":null,"SJAG_00846":null,"SJAG_01227":null,"SJAG_01416":null,"SJAG_01570":null,"SJAG_01860":null,"SJAG_02488":null,"SJAG_02523":null,"SJAG_02776":null,"SJAG_02804":null,"SJAG_02913":null,"SJAG_03066":null,"SJAG_03115":null,"SJAG_03292":null,"SJAG_03506":null,"SJAG_03672":null,"SJAG_03801":null,"SJAG_03878":null,"SJAG_04119":null,"SJAG_04165":null,"SJAG_04337":null,"SJAG_04881":null,"SJAG_04924":null,"SJAG_04975":null,"SJAG_05278":null,"SJAG_05327":null,"SJAG_06383":null,"SJAG_06425":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"GPI anchor metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0046472"],"synonyms":[{"name":"GPI anchor metabolism","type":"exact"},{"name":"GPI/GSI anchor metabolic process","type":"broad"},{"name":"GPI/GSI anchor metabolism","type":"broad"},{"name":"glycosylphosphatidylinositol metabolic process","type":"exact"},{"name":"glycosylphosphatidylinositol metabolism","type":"exact"}],"termid":"GO:0006505","terms_by_termid":{"GO:0006506":null,"GO:0006676":null}}


id: MONDO:0003756
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign, borderline, or malignant epithelial tumor of the ovary characterized by the presence of neoplastic epithelial cells that contain intracytoplasmic mucin and may resemble the epithelial cells of the endocervix or gastrointestinal tract.","definition_xrefs":["NCIT:C5242"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ovarian epithelial tumor","termid":"MONDO:0002229"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ovarian mucinous neoplasm","secondary_identifiers":["UMLS:C1335168","DOID:6067","MEDGEN:235419"],"synonyms":[{"name":"malignant ovarian mucinous neoplasm","type":"narrow"},{"name":"mucinous neoplasm of ovary","type":"exact"},{"name":"mucinous neoplasm of the ovary","type":"exact"},{"name":"mucinous tumor of ovary","type":"exact"},{"name":"mucinous tumor of the ovary","type":"exact"},{"name":"mucinous tumour of ovary","type":"exact"},{"name":"mucinous tumour of the ovary","type":"exact"},{"name":"ovarian mucinous neoplasm","type":"exact"},{"name":"ovarian mucinous tumor","type":"exact"},{"name":"ovarian mucinous tumour","type":"exact"}],"termid":"MONDO:0003756","xrefs":{"Monarch":{"xref_id":"0003756"}}}


id: PBO:0029912
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_cellular_sterol_level","termid":"PBO:0029912"}


id: PBO:0080617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WDR53 pseudogene 1","termid":"PBO:0080617"}


id: PBO:0080656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WEE2 pseudogene 1","termid":"PBO:0080656"}


id: MONDO:0012294
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete drug metabolism, poor, Cyp2C19-related (obsolete MONDO:0012294)","secondary_identifiers":["OMIM:609535"],"synonyms":[{"name":"Mephenytoin, poor metabolism of","type":"related"},{"name":"Omeprazole, poor metabolism of","type":"related"},{"name":"Opremazole, poor metabolism of","type":"related"},{"name":"Proguanil, poor metabolism of","type":"related"},{"name":"clopidogrel, impaired responsiveness to","type":"exact"},{"name":"clopidogrel, poor metabolism of","type":"related"},{"name":"drug metabolism, poor, Cyp2C19-related","type":"exact"},{"name":"mephenytoin poor metabolizer","type":"exact"},{"name":"omeprazole poor metabolizer","type":"exact"},{"name":"proguanil poor metabolizer","type":"exact"}],"termid":"MONDO:0012294","xrefs":{"Monarch":{"xref_id":"0012294"}}}


id: GO:0080109
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: indole-3-acetonitrile + H2O = indole-3-acetamide.","definition_xrefs":["PMID:11607511","PMID:12430025","MetaCyc:RXN-7567"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrile hydratase activity","termid":"GO:0018822"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"indole-3-acetonitrile nitrile hydratase activity","secondary_identifiers":["KEGG_REACTION:R04020"],"termid":"GO:0080109"}


id: GO:0120551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of succinyl-CoA from 2-oxoglutarate.  In most organisms, this pathway is part of the TCA cycle and comprises a series of three reactions carried out by a multisubunit complex called the '2-oxoglutarate dehydrogenase complex', even though 2-oxoglutarate dehydrogenase activity describes only one of those reactions. The combination of the three reactions can be summarized as: 2-oxoglutarate + coenzyme A + NAD+ -> succinyl-CoA + CO2 + NADH.","definition_xrefs":["MetaCyc:PWY-5084"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate metabolic process","termid":"GO:0006103"},{"relation_name":"is_a","term_name":"succinyl-CoA biosynthetic process","termid":"GO:1901290"},{"relation_name":"part_of","term_name":"tricarboxylic acid cycle","termid":"GO:0006099"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0006091","GO:0055086","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"2-oxoglutarate decarboxylation to succinyl-CoA","synonyms":[{"name":"2-ketoglutarate dehydrogenase system","type":"exact"},{"name":"2-oxoglutarate dehydrogenase system","type":"exact"},{"name":"2alpha-ketoglutarate dehydrogenase system","type":"exact"}],"termid":"GO:0120551"}


id: GO:0055100
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to adiponectin, a protein hormone produced by adipose tissue that modulates a number of metabolic processes, including glucose regulation and fatty acid catabolism.","definition_xrefs":["GOC:BHF","PMID:15210937","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"},{"relation_name":"is_a","term_name":"hormone binding","termid":"GO:0042562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"adiponectin binding","termid":"GO:0055100"}


id: GO:0098630
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The clustering together of unicellular organisms in suspension form aggregates.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell aggregation","termid":"GO:0098743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aggregation of unicellular organisms","synonyms":[{"name":"aggregation of single cell organisms","type":"exact"}],"termid":"GO:0098630"}


id: SO:0001397
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A post translationally modified phenylalanine amino acid feature.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_amino_acid_feature","termid":"SO:0001385"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified_L_phenylalanine","secondary_identifiers":["MOD:00914"],"synonyms":[{"name":"ModPhe","type":"exact"},{"name":"modified L phenylalanine","type":"exact"},{"name":"modified L-phenylalanine","type":"exact"}],"termid":"SO:0001397"}


id: MONDO:0001759
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete patent foramen ovale (obsolete MONDO:0001759)","termid":"MONDO:0001759","xrefs":{"Monarch":{"xref_id":"0001759"}}}


id: PBO:0081229
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger MYND-type containing 10","termid":"PBO:0081229"}


id: MONDO:0012619
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive non-syndromic intellectual disability","termid":"MONDO:0019502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0006025","MONDO:0005066"],"is_obsolete":false,"name":"intellectual disability, autosomal recessive 11","secondary_identifiers":["DOID:0081186","OMIM:611097","GARD:22546","MEDGEN:369677","MESH:C567012","UMLS:C1970193"],"synonyms":[{"name":"MRT11","type":"exact"},{"name":"intellectual disability, autosomal recessive 11","type":"exact"},{"name":"mental retardation, autosomal recessive 11","type":"related"},{"name":"mental retardation, autosomal recessive, 11","type":"exact"}],"termid":"MONDO:0012619","xrefs":{"Monarch":{"xref_id":"0012619"}}}


id: GO:1905397
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in an activated CD8-positive, alpha-beta T cell.","definition_xrefs":["GOC:TermGenie","GO_REF:0000085","PMID:24187568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell apoptotic process","termid":"GO:0070231"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"activated CD8-positive, alpha-beta T cell apoptotic process","synonyms":[{"name":"activated CD8-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"activated CD8-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"activated CD8-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"activated CD8-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"activated CD8-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"activated CD8-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"activated CD8-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"}],"termid":"GO:1905397"}


id: PBO:0005208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial RNA metabolism pathway protein Pet127","termid":"PBO:0005208"}


id: PBO:0061289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuronal PAS domain protein 1","termid":"PBO:0061289"}


id: GO:0160214
data:
  {"annotated_genes":["SJAG_00053","SJAG_03170"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[59782,92225],"is_not":false,"summary":null,"term":"GO:0160214"}]},"cv_name":"molecular_function","definition":"The binding activity of a molecule that brings together a plasma membrane with an endoplasmic reticulum membrane, via membrane lipid binding, to establish membrane contact sites and mediate exchange and communication.","definition_xrefs":["PMID:39239853","PMID:23041194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-membrane adaptor activity","termid":"GO:0043495"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00053":null,"SJAG_03170":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0060090","GO:0003674","GO:0030674"],"is_obsolete":false,"name":"endoplasmic reticulum-plasma membrane adaptor activity","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"termid":"GO:0160214","terms_by_termid":{"GO:0160214":null}}


id: PBO:0045849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 39","termid":"PBO:0045849"}


id: GO:0050141
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: nitroethane + H2O + O2 = acetaldehyde + nitrite + H2O2.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete nitroethane oxidase activity (obsolete GO:0050141)","termid":"GO:0050141"}


id: PBO:0083793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein of the mitochondrial intermembrane space; forms a complex with Tim10p (TIM10 complex) that delivers hydrophobic proteins to the TIM22 complex for insertion into the inner membrane","termid":"PBO:0083793"}


id: PBO:0046218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C pseudogene 11","termid":"PBO:0046218"}


id: PBO:0056706
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanotransferrin","termid":"PBO:0056706"}


id: PBO:0055371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2800","termid":"PBO:0055371"}


id: PBO:0000099
data:
  {"annotation_feature_type":"gene","cv_name":"feature_cvtermprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"from","termid":"PBO:0000099"}


id: FYPO:0000049
data:
  {"alleles_by_uniquename":{"SJAG_00370:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00370","name":"erg1delta","uniquename":"SJAG_00370:allele-1"},"SJAG_00409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00409","name":"gpd1delta","uniquename":"SJAG_00409:allele-1"},"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_03360:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03360","name":"shc1delta","uniquename":"SJAG_03360:allele-1"},"SJAG_04332:allele-1":{"allele_type":"amino_acid_mutation","description":"I30T,T572P","gene_uniquename":"SJAG_04332","name":"cdc25-D9","uniquename":"SJAG_04332:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"},"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[121239],"is_not":false,"summary":null,"term":"FYPO:0000049"},{"annotations":[121067],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001489"}],"single_locus_phenotype":[{"annotations":[120989],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0008029"},{"annotations":[121346],"is_not":false,"rel_names":["has_part","is_a"],"summary":null,"term":"FYPO:0007701"},{"annotations":[121514],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001489"},{"annotations":[121064],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0003976"}]},"cv_name":"fission_yeast_phenotype","definition":"A viability phenotype in which a cell is unable to survive under conditions in which wild type cells survive.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell viability","termid":"FYPO:0000004"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00370":null,"SJAG_00409":null,"SJAG_00871":null,"SJAG_03360":null,"SJAG_04332":null,"SJAG_04464":null,"SJAG_04697":null},"genotype_count":6,"genotypes_by_uniquename":{"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]},"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"erg1delta__shc1delta":{"display_name":"erg1delta shc1delta","display_uniquename":"erg1delta__shc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00370:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03360:allele-1","expression":"Null"}]}]},"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]},"gpd1delta":{"display_name":"gpd1delta","display_uniquename":"gpd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00409:allele-1","expression":"Null"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_04464","SJAG_00871","SJAG_03360","SJAG_00370"],"name":"inviable cell","references_by_uniquename":{"PMID:25866389":null,"PMID:28954740":null,"PMID:36058798":null,"PMID:37164017":null,"PMID:40195311":null},"single_locus_annotated_genes":["SJAG_04464","SJAG_04697","SJAG_04332","SJAG_00409"],"single_locus_genotype_uniquenames":["gms1delta","cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","gpd1delta","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"lethal in cell","type":"exact"}],"termid":"FYPO:0000049","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYPO:0000049":null,"FYPO:0001489":null,"FYPO:0003976":null,"FYPO:0007701":null,"FYPO:0008029":null,"FYPO_EXT:0000001":null}}


id: GO:0035876
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which the association between sister chromatids of a replicated chromosome along the length of the chromosome arms, is maintained as chromosomes condense, attach to the spindle in a bipolar orientation, and congress to the metaphase plate during a meiotic cell cycle.","definition_xrefs":["GOC:vw","PMID:1708436"],"gene_count":0,"genotype_count":0,"name":"obsolete maintenance of meiotic sister chromatid cohesion, arms (obsolete GO:0035876)","synonyms":[{"name":"maintenance of meiotic sister chromatin cohesion along arms","type":"exact"},{"name":"maintenance of sister chromatin cohesion along arms at meiosis I","type":"exact"}],"termid":"GO:0035876"}


id: GO:0047590
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + 5-dehydro-2-deoxy-D-gluconate = ADP + 6-phospho-5-dehydro-2-deoxy-D-gluconate.","definition_xrefs":["EC:2.7.1.92","MetaCyc:5-DEHYDRO-2-DEOXYGLUCONOKINASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016301","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"5-dehydro-2-deoxygluconokinase activity","secondary_identifiers":["RHEA:13497"],"synonyms":[{"name":"5-keto-2-deoxyglucono kinase (phosphorylating)","type":"related"},{"name":"5-keto-2-deoxygluconokinase activity","type":"related"},{"name":"ATP:5-dehydro-2-deoxy-D-gluconate 6-phosphotransferase activity","type":"related"},{"name":"DKH kinase activity","type":"related"}],"termid":"GO:0047590"}


id: MOD:01865
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a protein N-terminal with the Applied Biosystems mTRAQ light reporter+balance group.","definition_xrefs":["Unimod:888#N-term","OMSSA:208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mTRAQ light reporter+balance reagent acylated residue","termid":"MOD:01864"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mTRAQ light reporter+balance reagent acylated N-terminal","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems mTRAQ(TM) reagent","type":"related"},{"name":"mTRAQ light","type":"related"},{"name":"mTRAQ light on nterm","type":"exact"}],"termid":"MOD:01865"}


id: MONDO:0015959
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete inherited syndrome with bone tumors as a major feature (obsolete MONDO:0015959)","secondary_identifiers":["Orphanet:183527"],"synonyms":[{"name":"genetic bone tumor","type":"related"}],"termid":"MONDO:0015959","xrefs":{"Monarch":{"xref_id":"0015959"}}}


id: PBO:0078508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 2","termid":"PBO:0078508"}


id: GO:1904055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cholangiocyte proliferation.","definition_xrefs":["GOC:TermGenie","PMID:24434010","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of epithelial cell proliferation","termid":"GO:0050680"},{"relation_name":"is_a","term_name":"regulation of cholangiocyte proliferation","termid":"GO:1904054"},{"relation_name":"negatively_regulates","term_name":"cholangiocyte proliferation","termid":"GO:1990705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cholangiocyte proliferation","synonyms":[{"name":"down regulation of cholangiocyte proliferation","type":"exact"},{"name":"down regulation of hepatoblast proliferation","type":"exact"},{"name":"down-regulation of cholangiocyte proliferation","type":"exact"},{"name":"down-regulation of hepatoblast proliferation","type":"exact"},{"name":"downregulation of cholangiocyte proliferation","type":"exact"},{"name":"downregulation of hepatoblast proliferation","type":"exact"},{"name":"inhibition of cholangiocyte proliferation","type":"narrow"},{"name":"inhibition of hepatoblast proliferation","type":"narrow"},{"name":"negative regulation of hepatoblast proliferation","type":"exact"}],"termid":"GO:1904055"}


id: GO:0006483
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The hydroxylation of peptidyl-aspartic acid or asparagine.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-aspartic acid/asparagine hydroxylation (obsolete GO:0006483)","synonyms":[{"name":"aspartic acid/asparagine hydroxylation","type":"exact"},{"name":"peptidyl-aspartic acid/asparagine hydroxylation","type":"exact"}],"termid":"GO:0006483"}


id: GO:0036016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-3 stimulus.","definition_xrefs":["GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to interleukin-3","termid":"GO:0036015"},{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to interleukin-3","synonyms":[{"name":"cellular response to IL-3","type":"exact"}],"termid":"GO:0036016"}


id: FYPO:0002615
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the pre-autophagosomal structure is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to pre-autophagosomal structure","termid":"FYPO:0002614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein localization to pre-autophagosomal structure","synonyms":[{"name":"decreased protein localisation to pre-autophagosomal structure","type":"exact"},{"name":"decreased protein localization to PAS","type":"exact"},{"name":"decreased protein localization to pre-autophagosomal structure during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to pre-autophagosomal structure during vegetative growth","type":"exact"},{"name":"reduced protein localization to pre-autophagosomal structure","type":"exact"}],"termid":"FYPO:0002615"}


id: PBO:0055623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3062","termid":"PBO:0055623"}


id: PR:Q7Z9I0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC409.08 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q7Z9I0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized MFS-type transporter C409.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC409.08","synonyms":[{"name":"Spom972h-SPBC409.08","type":"exact"}],"termid":"PR:Q7Z9I0"}


id: PBO:0085411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane riboflavin transporter; facilitates the uptake of vitamin B2; required for FAD-dependent processes; sequence similarity to mammalian monocarboxylate permeases, however mutants are not deficient in monocarboxylate transport","termid":"PBO:0085411"}


id: _global:removed_by
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD_extension_relations","definition":"Identifies a gene product that removes the modification.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"removed_by","termid":"_global:removed_by"}


id: PBO:0074786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 7","termid":"PBO:0074786"}


id: PR:Q9UR24
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rhp26 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UR24"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein rhp26 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCP25A2.02c","synonyms":[{"name":"RAD26 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rhp26","type":"exact"}],"termid":"PR:Q9UR24"}


id: MONDO:0006050
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, aggressive, high grade invasive ductal carcinoma, not otherwise specified. It is characterized by the presence of pleomorphic and bizarre malignant cells that constitute more than 50 percent of the malignant cellular infiltrate.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"invasive ductal breast carcinoma","termid":"MONDO:0004953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"pleomorphic breast carcinoma","secondary_identifiers":["MEDGEN:307976","UMLS:C1514169","NCIT:C5161","EFO:1000047"],"synonyms":[{"name":"anaplastic breast carcinoma","type":"exact"}],"termid":"MONDO:0006050","xrefs":{"Monarch":{"xref_id":"0006050"}}}


id: GO:0039672
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont interferes with, inhibits or disrupts natural killer cell activation in the host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:10799855"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host natural killer cell mediated immune response","termid":"GO:0039671"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host natural killer cell activation","synonyms":[{"name":"suppression by virus of host NK-cell activation","type":"exact"},{"name":"suppression by virus of host natural killer cell activation","type":"narrow"}],"termid":"GO:0039672"}


id: GO:0047228
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 1,2-diacyl-sn-glycerol + UDP-alpha-D-glucose = a 1,2-diacyl-3-O-(alpha-D-glucopyranosyl)-sn-glycerol + H+ + UDP.","definition_xrefs":["RHEA:47612"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"1,2-diacylglycerol 3-glucosyltransferase activity","secondary_identifiers":["EC:2.4.1.337","MetaCyc:2.4.1.157-RXN"],"synonyms":[{"name":"UDP-glucose-diacylglycerol glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:1,2-diacylglycerol 3-D-glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:1,2-diacylglycerol glucosyltransferase activity","type":"related"},{"name":"UDPglucose:1,2-diacylglycerol 3-D-glucosyltransferase activity","type":"related"},{"name":"UDPglucose:diacylglycerol glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-diacylglycerol glucosyltransferase activity","type":"related"}],"termid":"GO:0047228"}


id: GO:0006458
data:
  {"annotated_genes":["SJAG_04741","SJAG_03094","SJAG_03237","SJAG_01510","SJAG_04784","SJAG_00750","SJAG_05189","SJAG_05206","SJAG_02461","SJAG_00112","SJAG_01664","SJAG_03267"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80326,91116,97426],"is_not":false,"summary":null,"term":"GO:0006458"},{"annotations":[81634,105538,106507,100373,119601,102526,89291,119502,76622],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051083"}]},"cv_name":"biological_process","definition":"The process of assisting in the folding of a nascent peptide chain into its correct tertiary structure.","definition_xrefs":["GOC:mb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein folding","termid":"GO:0006457"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00112":null,"SJAG_00750":null,"SJAG_01510":null,"SJAG_01664":null,"SJAG_02461":null,"SJAG_03094":null,"SJAG_03237":null,"SJAG_03267":null,"SJAG_04741":null,"SJAG_04784":null,"SJAG_05189":null,"SJAG_05206":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006457"},{"rel_name":"part_of","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0051604","GO:0006457","GO:0008150"],"is_obsolete":false,"name":"'de novo' protein folding","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"nascent chain protein folding","type":"exact"}],"termid":"GO:0006458","terms_by_termid":{"GO:0006458":null,"GO:0051083":null}}


id: RO:0002024
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2).  For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"directly_regulated_by","termid":"RO:0002022"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"directly_positively_regulated_by","termid":"RO:0002024"}


id: PBO:0028721
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_S-phase_DNA_damage_checkpoint","termid":"PBO:0028721"}


id: GO:2000197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ribonucleoprotein complex localization.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular localization","termid":"GO:0060341"},{"relation_name":"regulates","term_name":"ribonucleoprotein complex localization","termid":"GO:0071166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of ribonucleoprotein complex localization","synonyms":[{"name":"regulation of RNP localization","type":"exact"},{"name":"regulation of cellular ribonucleoprotein complex localization","type":"exact"},{"name":"regulation of establishment and maintenance of ribonucleoprotein complex localization","type":"exact"},{"name":"regulation of ribonucleoprotein complex localisation","type":"exact"}],"termid":"GO:2000197"}


id: GO:0106148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 4-hydroxyindole-3- carbonyl nitrile (4-OH-ICN), a cyanogenic glucoside.","definition_xrefs":["PMID:26352477","GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyanogenic glycoside biosynthetic process","termid":"GO:0019756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"4-hydroxyindole-3- carbonyl nitrile biosynthesis","termid":"GO:0106148"}


id: PR:Q9UTM0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- iec1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTM0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INO80 complex subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC144.02","synonyms":[{"name":"Spom972h-iec1","type":"exact"}],"termid":"PR:Q9UTM0"}


id: PBO:0084283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral membrane protein required for efficient mating; may participate in or regulate the low affinity Ca2+ influx system, which affects intracellular signaling and cell-cell fusion during mating","termid":"PBO:0084283"}


id: MONDO:0002761
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A highly differentiated variant of cervical squamous cell carcinoma characterized by the presence of a warty surface and stromal invasion with pushing borders. The malignant cells have abundant cytoplasm and minimal nuclear atypia. Koilocytosis is not present.","definition_xrefs":["NCIT:C40190"],"direct_ancestors":[{"relation_name":"is_a","term_name":"verrucous carcinoma","termid":"MONDO:0006006"},{"relation_name":"is_a","term_name":"cervical squamous cell carcinoma","termid":"MONDO:0006143"},{"relation_name":"is_a","term_name":"papillary carcinoma of the cervix uteri","termid":"MONDO:0016285"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"cervical verrucous carcinoma","secondary_identifiers":["DOID:3743","MEDGEN:275713","UMLS:C1516435"],"synonyms":[{"name":"cervical verrucous carcinoma","type":"exact"},{"name":"uterine cervix verrucous carcinoma","type":"exact"}],"termid":"MONDO:0002761","xrefs":{"Monarch":{"xref_id":"0002761"}}}


id: MONDO:0008783
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tangier disease (TD) is a rare lipoprotein metabolism disorder characterized biochemically by an almost complete absence of plasma high-density lipoproteins (HDL), and clinically by liver, spleen, lymph node and tonsil enlargement along with peripheral neuropathy in children and adolescents, and, occasionally, cardiovascular disease in adults.","definition_xrefs":["Orphanet:31150"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"},{"relation_name":"is_a","term_name":"hypolipoproteinemia","termid":"MONDO:0001822"},{"relation_name":"is_a","term_name":"hypoalphalipoproteinemia","termid":"MONDO:0017773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"Tangier disease","secondary_identifiers":["OMIM:205400","MedDRA:10051875","MESH:D013631","UMLS:C0039292","SCTID:723579009","NANDO:1200854","MEDGEN:52644","DOID:1388","NCIT:C85182","NORD:1757","GARD:7731"],"synonyms":[{"name":"A-alphalipoprotein neuropathy","type":"related"},{"name":"ATP-binding cassette transporter A1 deficiency","type":"exact"},{"name":"Alpha high density lipoprotein deficiency disease","type":"related"},{"name":"Analphalipo-proteinemia","type":"related"},{"name":"Analphalipoproteinemia","type":"exact"},{"name":"HDL lipoprotein deficiency disease","type":"related"},{"name":"HDLDT1","type":"related"},{"name":"Tangier disease","type":"exact"},{"name":"cholesterol thesaurismosis","type":"related"},{"name":"defective adenosine triphosphate-binding cassette transporter A1","type":"exact"},{"name":"familial Hypoalphalipo-proteinemia","type":"related"},{"name":"familial alpha-lipoprotein deficiency","type":"exact"},{"name":"familial high density lipoprotein deficiency","type":"exact"},{"name":"familial high density lipoprotein deficiency disease","type":"related"},{"name":"high density lipoprotein deficiency, Tangier type","type":"related"},{"name":"high density lipoprotein deficiency, type 1","type":"related"},{"name":"tgd","type":"related"}],"termid":"MONDO:0008783","xrefs":{"Monarch":{"xref_id":"0008783"}}}


id: PBO:0072475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 4","termid":"PBO:0072475"}


id: GO:1905070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of an anterior visceral endoderm cell from one site to another.","definition_xrefs":["PMID:17078044","GO_REF:0000091","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration","termid":"GO:0016477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior visceral endoderm cell migration","termid":"GO:1905070"}


id: PBO:0084684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial carrier protein; involved in the accumulation of CoA in the mitochondrial matrix; homolog of human Graves disease protein SLC25A16, which complements yeast null mutant; does not encode an isozyme of Leu4p, as first hypothesized","termid":"PBO:0084684"}


id: MOD:00195
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-alanine residue and a glycine residue to form L-alanine 5-imidazolinone glycine.","definition_xrefs":["RESID:AA0187","PubMed:10220322"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5-imidazolinone ring crosslinked residues (Gly)","termid":"MOD:01882"},{"relation_name":"is_a","term_name":"crosslinked L-alanine residue","termid":"MOD:02040"},{"relation_name":"is_a","term_name":"crosslinked glycine residue","termid":"MOD:02047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-alanine 5-imidazolinone glycine","synonyms":[{"name":"(2-[(1S)-1-aminoethyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid","type":"exact"},{"name":"2-[1-aminoethyl]-1-carboxymethyl-1-imidazolin-5-one","type":"exact"},{"name":"4-methylidene-imidazole-5-one active site","type":"exact"},{"name":"CROSSLNK 5-imidazolinone (Ala-Gly)","type":"exact"},{"name":"L-alanine 5-imidazolinone glycine","type":"exact"},{"name":"XLNK-1Ala-NGly(Imidazole)","type":"exact"},{"name":"alanyl-5-imidazolinone glycine","type":"exact"},{"name":"para-hydroxybenzylidene-imidazolidinone chromophore","type":"exact"}],"termid":"MOD:00195"}


id: GO:0000294
data:
  {"annotated_genes":["SJAG_03234","SJAG_03952"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75337,106601],"is_not":false,"summary":null,"term":"GO:0000294"}]},"cv_name":"biological_process","definition":"A minor MRP-dependent nuclear-transcribed mRNA degradation pathway that begins with an endonucleolytic cleavage to generate unprotected ends.","definition_xrefs":["PMID:14729943"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear-transcribed mRNA catabolic process","termid":"GO:0000956"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03234":null,"SJAG_03952":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0016071","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"nuclear-transcribed mRNA catabolic process, RNase MRP-dependent","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"nuclear mRNA catabolic process, endonucleolytic cleavage-dependent decay","type":"exact"},{"name":"nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay","type":"related"}],"termid":"GO:0000294","terms_by_termid":{"GO:0000294":null}}


id: PBO:0058533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6078","termid":"PBO:0058533"}


id: PBO:0051394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda joining 2","termid":"PBO:0051394"}


id: MONDO:0010235
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-linked intellectual disability-psychosis-macroorchidism syndrome","secondary_identifiers":["Orphanet:3077","UMLS:C0796222","OMIM:300055","DOID:0060827","MEDGEN:163232","ICD9:758.89","SCTID:702356009","GARD:3506"],"synonyms":[{"name":"Lindsay-Burn syndrome","type":"exact"},{"name":"MRXS13","type":"exact"},{"name":"PPM-X","type":"exact"},{"name":"PPM-X syndrome","type":"related"},{"name":"X-linked intellectual disability 79","type":"exact"},{"name":"X-linked intellectual disability with spasticity","type":"exact"},{"name":"X-linked mental retardation 79","type":"exact"},{"name":"X-linked mental retardation with spasticity","type":"exact"},{"name":"intellectual deficit, X-linked - psychosis - macroorchidism","type":"related"},{"name":"intellectual developmental disorder, X-linked, syndromic 13, X-linked recessive","type":"exact"},{"name":"intellectual disability psychosis macroorchidism","type":"related"},{"name":"intellectual disability with psychosis, pyramidal signs, and macroorchidism","type":"exact"},{"name":"intellectual disability, X-linked 16","type":"related"},{"name":"intellectual disability, X-linked 79","type":"related"},{"name":"intellectual disability, X-linked, syndromic 13","type":"exact"},{"name":"intellectual disability, X-linked, syndromic type 13","type":"exact"},{"name":"intellectual disability, X-linked, with spasticity","type":"related"},{"name":"mental retardation psychosis macroorchidism","type":"related"},{"name":"mental retardation with psychosis, pyramidal signs, and macroorchidism","type":"exact"},{"name":"mental retardation, X-linked 16","type":"related"},{"name":"mental retardation, X-linked 79","type":"related"},{"name":"mental retardation, X-linked, syndromic 13","type":"exact"},{"name":"mental retardation, X-linked, syndromic type 13","type":"exact"},{"name":"mental retardation, X-linked, with spasticity","type":"related"}],"termid":"MONDO:0010235","xrefs":{"Monarch":{"xref_id":"0010235"}}}


id: PBO:0063497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDZ and LIM domain 5","termid":"PBO:0063497"}


id: PBO:0038683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA synthetase short chain family member 2","termid":"PBO:0038683"}


id: GO:0019061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which an incoming virus is disassembled in the host cell to release a replication-competent viral genome.","definition_xrefs":["ISBN:0781702534","PMID:8162442","GOC:plm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"uncoating of virus","secondary_identifiers":["Reactome:R-HSA-162585","Reactome:R-HSA-168336"],"synonyms":[{"name":"viral uncoating","type":"exact"}],"termid":"GO:0019061"}


id: PBO:0051624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ILK associated serine/threonine phosphatase","termid":"PBO:0051624"}


id: PBO:0049531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A.Z histone pseudogene 2","termid":"PBO:0049531"}


id: PBO:0051971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interacts with SUPT6H, CTD assembly factor 1","termid":"PBO:0051971"}


id: PBO:0026920
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H4-K8_acetylation","termid":"PBO:0026920"}


id: GO:0097178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a ruffle, a projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork. The formation of ruffles (also called membrane ruffling) is thought to be controlled by a group of enzymes known as Rho GTPases, specifically RhoA, Rac1 and cdc42.","definition_xrefs":["PMID:12556481","Wikipedia:Membrane_ruffling","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ruffle organization","termid":"GO:0031529"},{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection assembly","termid":"GO:0120031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"ruffle assembly","synonyms":[{"name":"membrane ruffle formation","type":"exact"},{"name":"membrane ruffling","type":"exact"}],"termid":"GO:0097178"}


id: GO:1903224
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of endodermal cell differentiation.","definition_xrefs":["GOC:TermGenie","PMID:23154389","GO_REF:0000058","GOC:als"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell differentiation","termid":"GO:0045595"},{"relation_name":"regulates","term_name":"endodermal cell differentiation","termid":"GO:0035987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of endodermal cell differentiation","synonyms":[{"name":"regulation of endoderm cell differentiation","type":"exact"}],"termid":"GO:1903224"}


id: PBO:0063121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(ADP-ribose) polymerase family member 4 pseudogene 3","termid":"PBO:0063121"}


id: PBO:0085183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"One of three alternate beta-subunits of the Snf1p kinase complex; may confer substrate specificity; vacuolar protein containing KIS (Kinase-Interacting Sequence) and ASC (Association with Snf1 kinase Complex) domains involved in protein interactions","termid":"PBO:0085183"}


id: SO:0001944
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 9th residue (a lysine), from the start of the H2A histone protein is acetylated.","definition_xrefs":["EBI:nj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_2A_acetylation_site","termid":"SO:0002142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H2AK9_acetylation_site","synonyms":[{"name":"H2AK9 acetylation site","type":"exact"},{"name":"H2AK9ac","type":"exact"}],"termid":"SO:0001944"}


id: MONDO:0800387
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A poisoning that is caused by exposure to sulfur mustard. The effects of mustard poisoning may be local, systemic, or both, depending on environmental conditions, exposed organs, and the extent and duration of exposure. The toxic effects of mustard include inhibition of mitosis, NAD depletion, decreased tissue respiration and finally cell death.","definition_xrefs":["MONDO:patterns/patterns/poisoning"],"direct_ancestors":[{"relation_name":"is_a","term_name":"poisoning","termid":"MONDO:0029000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfur mustard poisoning","synonyms":[{"name":"mustard agent poisoning","type":"exact"},{"name":"mustard gas poisoning","type":"exact"}],"termid":"MONDO:0800387","xrefs":{"Monarch":{"xref_id":"0800387"}}}


id: FYPO:0006991
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which heterochromatin is assembled over a normal (i.e. indistinguishable from wild type) portion of the chromosome in regions containing protein-coding genes.","definition_xrefs":["PMID:26518661","PomBase:mah","GO:0031509"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal chromatin organization","termid":"FYPO:0007940"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal spatial extent of heterochromatin assembly at protein coding gene","synonyms":[{"name":"normal spatial extent of heterochromatin assembly at protein coding gene during mitotic cell cycle","type":"related"},{"name":"normal spatial extent of heterochromatin assembly at protein coding gene during vegetative growth","type":"exact"},{"name":"normal spatial extent of heterochromatin formation at protein coding gene","type":"exact"}],"termid":"FYPO:0006991"}


id: PBO:0074460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingomyelin phosphodiesterase 4B, pseudogene","termid":"PBO:0074460"}


id: PBO:0029429
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_RNA_level_during_cellular_response_to_heat","termid":"PBO:0029429"}


id: FYPO:0002599
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H2A phosphorylation is abnormal. All histone H2A phosphorylation may be affected, or phosphorylation of specific sites on histone H2A may be altered.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone modification during vegetative growth","termid":"FYPO:0000330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0005447","FYPO:0002274","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal histone H2A phosphorylation during vegetative growth","synonyms":[{"name":"abnormal histone H2A phosphorylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002599"}


id: GO:0072063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the short descending thin limb over time, from its formation to the mature structure. The short descending thin limb is the descending thin limb of a short nephron that has a squamous epithelial morphology.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron epithelium development","termid":"GO:0072009"},{"relation_name":"is_a","term_name":"descending thin limb development","termid":"GO:0072022"},{"relation_name":"part_of","term_name":"short nephron development","termid":"GO:0072030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"short descending thin limb development","termid":"GO:0072063"}


id: PR:Q8TFH4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAPB17E12.10c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q8TFH4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal RNA methyltransferase PB17E12.10c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB17E12.10c","synonyms":[{"name":"Spom972h-SPAPB17E12.10c","type":"exact"},{"name":"rRNA (uridine-2'-O-)-methyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q8TFH4"}


id: PBO:0065609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTP4A1 pseudogene 3","termid":"PBO:0065609"}


id: MONDO:0013054
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microcephaly, growth retardation, cataract, hearing loss, and unusual appearance","secondary_identifiers":["OMIM:612947","MESH:C567849","MEDGEN:416652","UMLS:C2751870"],"synonyms":[{"name":"microcephaly, growth retardation, cataract, hearing loss, and unusual appearance","type":"exact"}],"termid":"MONDO:0013054","xrefs":{"Monarch":{"xref_id":"0013054"}}}


id: GO:0032497
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a lipopolysaccharide stimulus is received by a cell and converted into a molecular signal. Lipopolysaccharide is a major component of the cell wall of gram-negative bacteria.","definition_xrefs":["GOC:add","PMID:15998797"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of molecule of bacterial origin","termid":"GO:0032490"},{"relation_name":"is_a","term_name":"response to lipopolysaccharide","termid":"GO:0032496"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of lipopolysaccharide","synonyms":[{"name":"detection of LPS","type":"exact"}],"termid":"GO:0032497"}


id: PBO:0050457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homer scaffold protein 3","termid":"PBO:0050457"}


id: PBO:0061440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 2 group E member 3","termid":"PBO:0061440"}


id: GO:0035686
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cytoskeletal structure surrounding the axoneme and outer dense fibers of the sperm flagellum. Consists of two longitudinal columns connected by closely arrayed semicircular ribs that assemble from distal to proximal throughout spermiogenesis. The fibrous sheath probably influences the degree of flexibility, plane of flagellar motion, and the shape of the flagellar beat.","definition_xrefs":["GOC:krc","PMID:3282552","PMID:20731842","GOC:cilia","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"sperm flagellum","termid":"GO:0036126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"sperm fibrous sheath","synonyms":[{"name":"flagellar fibrous sheath","type":"exact"},{"name":"flagellum fibrous sheath","type":"exact"}],"termid":"GO:0035686"}


id: GO:0034363
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A triglyceride-rich lipoprotein particle that typically contains APOB100, APOE and APOCs and has a density of 1.006-1.019 g/ml and a diameter of between 25-30 nm. IDL particles are found in blood and are formed by the delipidation of very-low-density lipoprotein particles (VLDL). IDL particles are removed from blood by the liver, following binding to the APOE receptor, or are converted to low-density lipoprotein (LDL).","definition_xrefs":["GOC:expert_pt","GOC:BHF","GOC:rl","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triglyceride-rich plasma lipoprotein particle","termid":"GO:0034385"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005576","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"intermediate-density lipoprotein particle","synonyms":[{"name":"IDL complex","type":"exact"},{"name":"IDL particle","type":"exact"},{"name":"intermediate-density lipoprotein complex","type":"exact"}],"termid":"GO:0034363"}


id: PBO:0040142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"achaete-scute family bHLH transcription factor 5","termid":"PBO:0040142"}


id: GO:0072135
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of cells, resulting in the expansion of a mesenchymal cell population in the kidney.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchymal cell proliferation","termid":"GO:0010463"},{"relation_name":"is_a","term_name":"cell proliferation involved in kidney development","termid":"GO:0072111"},{"relation_name":"part_of","term_name":"kidney mesenchyme development","termid":"GO:0072074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"kidney mesenchymal cell proliferation","termid":"GO:0072135"}


id: PBO:0071699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL38 pseudogene 5","termid":"PBO:0071699"}


id: GO:0003856
data:
  {"annotated_genes":["SJAG_00337"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[60421],"is_not":false,"summary":null,"term":"GO:0003856"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate = 3-dehydroquinate + phosphate.","definition_xrefs":["EC:4.2.3.4","RHEA:21968"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00337":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"3-dehydroquinate synthase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["MetaCyc:3-DEHYDROQUINATE-SYNTHASE-RXN","KEGG_REACTION:R03083"],"termid":"GO:0003856","terms_by_termid":{"GO:0003856":null}}


id: MONDO:0859531
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with language delay and behavioral abnormalities, with or without seizures","secondary_identifiers":["OMIM:620292","UMLS:C5830365","MEDGEN:1841001"],"termid":"MONDO:0859531","xrefs":{"Monarch":{"xref_id":"0859531"}}}


id: GO:2001198
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of dendritic cell differentiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte differentiation","termid":"GO:1902105"},{"relation_name":"regulates","term_name":"dendritic cell differentiation","termid":"GO:0097028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dendritic cell differentiation","termid":"GO:2001198"}


id: GO:0004321
data:
  {"annotated_genes":["SJAG_04972","SJAG_04107"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[58816,60359],"is_not":false,"summary":null,"term":"GO:0004321"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + n malonyl-CoA + 2n NADH + 2n NADPH + 4n H+ = a long-chain acyl-CoA + n CoA + n CO2 + 2n NAD+ + 2n NADP+.","definition_xrefs":["EC:2.3.1.86"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C-acyltransferase activity","termid":"GO:0016408"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04107":null,"SJAG_04972":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016746","GO:0003674"],"is_obsolete":false,"name":"fatty-acyl-CoA synthase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["RHEA:22896","MetaCyc:FATTY-ACYL-COA-SYNTHASE-RXN"],"synonyms":[{"name":"acyl-CoA:malonyl-CoA C-acyltransferase (decarboxylating, oxoacyl- and enoyl- reducing)","type":"related"},{"name":"fatty acyl CoA synthase activity","type":"exact"},{"name":"yeast fatty acid synthase activity","type":"narrow"}],"termid":"GO:0004321","terms_by_termid":{"GO:0004321":null}}


id: GO:0009123
data:
  {"annotated_genes":["SJAG_04681","SJAG_04487","SJAG_04970","SJAG_01661","SJAG_02850","SJAG_00964","SJAG_03355","SJAG_03164","SJAG_04845","SJAG_03811","SJAG_04354","SJAG_00044","SJAG_04634","SJAG_03771","SJAG_01974","SJAG_04627","SJAG_00444","SJAG_03140","SJAG_02038","SJAG_00694","SJAG_00779","SJAG_01070","SJAG_04849","SJAG_06634","SJAG_00533","SJAG_04713","SJAG_01055","SJAG_01081","SJAG_04882","SJAG_00197","SJAG_01298","SJAG_02364","SJAG_01937","SJAG_01859","SJAG_01814","SJAG_04123","SJAG_03708","SJAG_04709"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71481],"is_not":false,"summary":null,"term":"GO:0009123"},{"annotations":[80706,78728],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044208"},{"annotations":[71662,58353,73333,60564,66803,57215,78503,65440],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006189"},{"annotations":[59858,62707,57334,61710,59484],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044205"},{"annotations":[78141,59838],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046033"},{"annotations":[57366,75680],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044209"},{"annotations":[69603],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009224"},{"annotations":[77518,70493],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009159"},{"annotations":[81214,71649],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006231"},{"annotations":[71648,81237],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006226"},{"annotations":[74584],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009398"},{"annotations":[115970],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046444"},{"annotations":[59857,63912],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006177"},{"annotations":[65367],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046037"},{"annotations":[103012,77381],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032263"},{"annotations":[80707],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046040"},{"annotations":[65953,77382],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032264"},{"annotations":[62476,64427,60547],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009156"},{"annotations":[69604,93787,94784,89272,90266],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044206"},{"annotations":[110112,77383],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032265"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a nucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with phosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside phosphate metabolic process","termid":"GO:0006753"}],"gene_count":38,"genes_by_uniquename":{"SJAG_00044":null,"SJAG_00197":null,"SJAG_00444":null,"SJAG_00533":null,"SJAG_00694":null,"SJAG_00779":null,"SJAG_00964":null,"SJAG_01055":null,"SJAG_01070":null,"SJAG_01081":null,"SJAG_01298":null,"SJAG_01661":null,"SJAG_01814":null,"SJAG_01859":null,"SJAG_01937":null,"SJAG_01974":null,"SJAG_02038":null,"SJAG_02364":null,"SJAG_02850":null,"SJAG_03140":null,"SJAG_03164":null,"SJAG_03355":null,"SJAG_03708":null,"SJAG_03771":null,"SJAG_03811":null,"SJAG_04123":null,"SJAG_04354":null,"SJAG_04487":null,"SJAG_04627":null,"SJAG_04634":null,"SJAG_04681":null,"SJAG_04709":null,"SJAG_04713":null,"SJAG_04845":null,"SJAG_04849":null,"SJAG_04882":null,"SJAG_04970":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"nucleoside monophosphate metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"GO_REF:0000117":null},"synonyms":[{"name":"nucleoside monophosphate metabolism","type":"exact"}],"termid":"GO:0009123","terms_by_termid":{"GO:0006177":null,"GO:0006189":null,"GO:0006226":null,"GO:0006231":null,"GO:0009123":null,"GO:0009156":null,"GO:0009159":null,"GO:0009224":null,"GO:0009398":null,"GO:0032263":null,"GO:0032264":null,"GO:0032265":null,"GO:0044205":null,"GO:0044206":null,"GO:0044208":null,"GO:0044209":null,"GO:0046033":null,"GO:0046037":null,"GO:0046040":null,"GO:0046444":null}}


id: GO:0120341
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The short portion of the radial spoke 2 (RS2) that is directly anchored to the A microtubule of an axonemal microtubule doublet.","definition_xrefs":["PMID:22754630","GOC:krc","PMID:25694453"],"direct_ancestors":[{"relation_name":"is_a","term_name":"radial spoke base","termid":"GO:0120339"},{"relation_name":"part_of","term_name":"radial spoke 2","termid":"GO:0120334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"radial spoke base 2","termid":"GO:0120341"}


id: PBO:0073173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selectin E","termid":"PBO:0073173"}


id: GO:1901765
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of phosphinothricin.","definition_xrefs":["GOC:yaf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"phosphinothricin metabolic process","termid":"GO:1901764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phosphinothricin catabolic process","synonyms":[{"name":"phosphinothricin breakdown","type":"exact"},{"name":"phosphinothricin catabolism","type":"exact"},{"name":"phosphinothricin degradation","type":"exact"}],"termid":"GO:1901765"}


id: GO:1902246
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cis-abienol.","definition_xrefs":["PMID:22672125","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diterpenoid biosynthetic process","termid":"GO:0016102"},{"relation_name":"is_a","term_name":"cis-abienol metabolic process","termid":"GO:1902244"},{"relation_name":"is_a","term_name":"tertiary alcohol biosynthetic process","termid":"GO:1902645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"cis-abienol biosynthetic process","synonyms":[{"name":"cis-abienol anabolism","type":"exact"},{"name":"cis-abienol biosynthesis","type":"exact"},{"name":"cis-abienol formation","type":"exact"},{"name":"cis-abienol synthesis","type":"exact"}],"termid":"GO:1902246"}


id: PR:Q10171
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- uch1 gene.","definition_xrefs":["UniProtKB:Q10171","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin carboxyl-terminal hydrolase Uch1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC27F1.03c","synonyms":[{"name":"SPAC27F1.03c","type":"related"},{"name":"Spom972h-uch1","type":"exact"},{"name":"ubiquitin carboxyl-terminal hydrolase 1 (Schizosaccharomyces pombe 972h-)","type":"related"}],"termid":"PR:Q10171"}


id: PBO:0073001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium voltage-gated channel beta subunit 2","termid":"PBO:0073001"}


id: PBO:0000006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene characterisation status","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dubious","termid":"PBO:0000006"}


id: GO:0140728
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a GC-box, a DNA motif with the consensus sequence GGGCGG that is located upstream of the start point of eukaryotic transcription units. The GC-box may occur in multiple copies or in either orientation relative to the transcription start site.","definition_xrefs":["PMID:14701757"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II cis-regulatory region sequence-specific DNA binding","termid":"GO:0000978"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0000976"}],"interesting_parent_ids":["GO:0000976","GO:0003677","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"GC-box binding","synonyms":[{"name":"GC box binding","type":"exact"},{"name":"GC rich promoter region binding","type":"broad"},{"name":"GC-rich region binding","type":"broad"},{"name":"GC_rich_promoter_region binding","type":"broad"}],"termid":"GO:0140728"}


id: GO:0008579
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: JUN kinase serine/threonine/tyrosine phosphate + H2O = JUN kinase serine/threonine/tyrosine + phosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein tyrosine/serine/threonine phosphatase activity","termid":"GO:0008138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0004721"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0004721","GO:0003824","GO:0003674","GO:0140096","GO:0016788","GO:0016787"],"is_obsolete":false,"name":"JUN kinase phosphatase activity","termid":"GO:0008579"}


id: GO:0050490
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + a 1,4-lactone = a 4-hydroxyacid.","definition_xrefs":["EC:3.1.1.25","MetaCyc:14-LACTONASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003824","GO:0016788","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"1,4-lactonase activity","secondary_identifiers":["RHEA:12745"],"synonyms":[{"name":"1,4-lactone hydroxyacylhydrolase activity","type":"related"},{"name":"gamma-lactonase activity","type":"related"}],"termid":"GO:0050490"}


id: FYPO:0004554
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal during S phase of the mitotic cell cycle and during a cellular response to ionizing radiation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein phosphorylation during mitotic G2 phase during cellular response to ionizing radiation","termid":"FYPO:0004261"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0002274","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein phosphorylation during mitotic S phase during cellular response to ionizing radiation","synonyms":[{"name":"decreased protein phosphorylation during cellular response to ionizing radiation during S phase of mitotic cell cycle","type":"exact"},{"name":"decreased protein phosphorylation during cellular response to ionizing radiation during mitotic S phase","type":"exact"},{"name":"decreased protein phosphorylation during mitotic S phase during cellular response to IR","type":"exact"},{"name":"decreased protein phosphorylation during mitotic S phase during cellular response to ionizing radiation during vegetative growth","type":"exact"},{"name":"reduced protein phosphorylation during cellular response to IR during mitotic S phase","type":"exact"},{"name":"reduced protein phosphorylation during mitotic S phase during cellular response to ionizing radiation","type":"exact"}],"termid":"FYPO:0004554"}


id: GO:0140036
data:
  {"annotated_genes":["SJAG_04574"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[112350],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061649"}]},"cv_name":"molecular_function","definition":"A molecular adaptor recognizes and binds a target protein containing a ubiquitination modification and brings the target protein into contact with another protein to allow those proteins to function in a coordinated way.","definition_xrefs":["PMID:26060076"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like protein reader activity","termid":"GO:0140035"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04574":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0060090","GO:0003674","GO:0030674"],"is_obsolete":false,"name":"ubiquitin-modified protein reader activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ubiquitin-dependent protein binding","type":"exact"}],"termid":"GO:0140036","terms_by_termid":{"GO:0061649":null}}


id: PBO:0018037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hexose transmembrane transporter Ght2","termid":"PBO:0018037"}


id: GO:1903058
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of melanosome organization.","definition_xrefs":["GOC:BHF","GOC:TermGenie","GOC:rl","GO_REF:0000058","PMID:24769727"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organelle organization","termid":"GO:0010638"},{"relation_name":"is_a","term_name":"regulation of melanosome organization","termid":"GO:1903056"},{"relation_name":"positively_regulates","term_name":"melanosome organization","termid":"GO:0032438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of melanosome organization","synonyms":[{"name":"activation of melanosome organisation","type":"narrow"},{"name":"activation of melanosome organization","type":"narrow"},{"name":"activation of melanosome organization and biogenesis","type":"related"},{"name":"positive regulation of melanosome organisation","type":"exact"},{"name":"positive regulation of melanosome organization and biogenesis","type":"related"},{"name":"up regulation of melanosome organisation","type":"exact"},{"name":"up regulation of melanosome organization","type":"exact"},{"name":"up regulation of melanosome organization and biogenesis","type":"related"},{"name":"up-regulation of melanosome organisation","type":"exact"},{"name":"up-regulation of melanosome organization","type":"exact"},{"name":"up-regulation of melanosome organization and biogenesis","type":"related"},{"name":"upregulation of melanosome organisation","type":"exact"},{"name":"upregulation of melanosome organization","type":"exact"},{"name":"upregulation of melanosome organization and biogenesis","type":"related"}],"termid":"GO:1903058"}


id: GO:1900798
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of cordyol C.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound catabolic process","termid":"GO:0019614"},{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"},{"relation_name":"is_a","term_name":"cordyol C metabolic process","termid":"GO:1900797"},{"relation_name":"is_a","term_name":"ether catabolic process","termid":"GO:1901502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"cordyol C catabolic process","synonyms":[{"name":"cordyol C breakdown","type":"exact"},{"name":"cordyol C catabolism","type":"exact"},{"name":"cordyol C degradation","type":"exact"}],"termid":"GO:1900798"}


id: PBO:0120019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactoylglutathione lyase (glyoxalase I)","termid":"PBO:0120019"}


id: PBO:0116760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMARCE1 pseudogene 6","termid":"PBO:0116760"}


id: PBO:0073351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family B member 10","termid":"PBO:0073351"}


id: MONDO:0003108
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"infratentorial cancer","termid":"MONDO:0003107"},{"relation_name":"is_a","term_name":"spinal cord neoplasm","termid":"MONDO:0021234"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervicomedullary junction neoplasm","secondary_identifiers":["MEDGEN:272453","DOID:4707","NCIT:C5423","UMLS:C1332923"],"synonyms":[{"name":"cervicomedullary junction neoplasms","type":"exact"},{"name":"cervicomedullary junction tumor","type":"exact"},{"name":"cervicomedullary junction tumour","type":"exact"},{"name":"neoplasm of cervicomedullary junction","type":"exact"},{"name":"neoplasm of the cervicomedullary junction","type":"exact"},{"name":"tumor of cervicomedullary junction","type":"exact"},{"name":"tumor of the cervicomedullary junction","type":"exact"},{"name":"tumour of cervicomedullary junction","type":"exact"},{"name":"tumour of the cervicomedullary junction","type":"exact"}],"termid":"MONDO:0003108","xrefs":{"Monarch":{"xref_id":"0003108"}}}


id: PBO:0059904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND1 pseudogene 27","termid":"PBO:0059904"}


id: PBO:0083520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF MST27","termid":"PBO:0083520"}


id: PBO:0074929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 96B","termid":"PBO:0074929"}


id: PBO:0029212
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_dTTP_biosynthetic_process","termid":"PBO:0029212"}


id: PBO:0074392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMIM2 antisense RNA 1","termid":"PBO:0074392"}


id: PBO:0070314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY3 pseudogene 3","termid":"PBO:0070314"}


id: GO:0021794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the thalamus changes over time, from its initial formation to its mature state.","definition_xrefs":["GO_REF:0000021","GOC:dgh","GOC:dph","GOC:cls","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"diencephalon development","termid":"GO:0021536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thalamus development","termid":"GO:0021794"}


id: PBO:0068079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 385","termid":"PBO:0068079"}


id: GO:0052110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism reduces the flow of fluid within its host's vascular system, the vessels and tissue that carry or circulate fluids, such as blood, lymph or sap, through the body of an animal or plant. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete occlusion by symbiont of host vascular system (obsolete GO:0052110)","termid":"GO:0052110"}


id: GO:0051920
data:
  {"annotated_genes":["SJAG_02630","SJAG_01199","SJAG_02515","SJAG_03166","SJAG_00141","SJAG_01216"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[64760],"is_not":false,"summary":null,"term":"GO:0051920"},{"annotations":[97015,110678,81169,77586,71984],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008379"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: [protein]-dithol + ROOH = [protein]-disulfide + H2O + ROH.","definition_xrefs":["RHEA:10008"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxidase activity","termid":"GO:0004601"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00141":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_02515":null,"SJAG_02630":null,"SJAG_03166":null},"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"peroxiredoxin activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1222431","Reactome:R-HSA-1500804","Reactome:R-HSA-1222755"],"synonyms":[{"name":"PRDX activity","type":"exact"},{"name":"Prx activity","type":"exact"}],"termid":"GO:0051920","terms_by_termid":{"GO:0008379":null,"GO:0051920":null}}


id: PBO:0071549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 14","termid":"PBO:0071549"}


id: GO:0097448
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A configuration of neuron spines found on ciliary ganglion neurons in the embryonic and adult brain consisting of patches of closely spaced spines lying flat against the soma.","definition_xrefs":["PMID:10818137","NIF_Subcellular:sao2128156969"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"spine mat","termid":"GO:0097448"}


id: GO:0036462
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An extrinsic apoptotic signaling pathway initiated by the binding of the ligand TRAIL (tumor necrosis factor-related apoptosis-inducing ligand) to a death receptor on the cell surface.","definition_xrefs":["GOC:PARL","PMID:21785459","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic apoptotic signaling pathway via death domain receptors","termid":"GO:0008625"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"TRAIL-activated apoptotic signaling pathway","synonyms":[{"name":"TRAIL-activated extrinsic apoptotic signaling pathway","type":"exact"},{"name":"TRAIL-induced apoptotic signaling pathway","type":"exact"},{"name":"tumor necrosis factor-related apoptosis-inducing ligand apoptotic signaling pathway","type":"exact"}],"termid":"GO:0036462"}


id: PBO:0029601
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_transporter_activity","termid":"PBO:0029601"}


id: PBO:0074988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 114-30","termid":"PBO:0074988"}


id: GO:0031896
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a V2 vasopressin receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vasopressin receptor binding","termid":"GO:0031893"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"V2 vasopressin receptor binding","synonyms":[{"name":"V2 vasopressin receptor ligand","type":"narrow"}],"termid":"GO:0031896"}


id: PBO:0055895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 15","termid":"PBO:0055895"}


id: FYPO:0000004
data:
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viability","references_by_uniquename":{"PMID:25866389":null,"PMID:28954740":null,"PMID:29566183":null,"PMID:30664646":null,"PMID:31150379":null,"PMID:36058798":null,"PMID:37164017":null,"PMID:40195311":null},"single_locus_annotated_genes":["SJAG_04464","SJAG_01718","SJAG_04280","SJAG_03453","SJAG_00514","SJAG_03581","SJAG_00409","SJAG_03384","SJAG_02379","SJAG_04551","SJAG_03753","SJAG_00993","SJAG_04777","SJAG_00370","SJAG_02923","SJAG_02819","SJAG_02342","SJAG_01181","SJAG_02592","SJAG_03048","SJAG_00028","SJAG_02013","SJAG_04522","SJAG_01794","SJAG_04009","SJAG_02486","SJAG_04697","SJAG_04332"],"single_locus_genotype_uniquenames":["wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","rga6delta","wis1delta","wis4delta","pyp1delta","gap1delta","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","gms1delta","erg1delta","pek1delta","cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type","ras1delta","gpd1delta","rga4delta","gef1delta","ste6delta","ste11delta","byr2delta","scd2delta","byr1delta","efc25delta","cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","spk1delta","mkh1delta","wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","pmk1delta","scd1delta","win1delta","sty1delta"],"termid":"FYPO:0000004","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000338":null,"FYPO:0000049":null,"FYPO:0000124":null,"FYPO:0000648":null,"FYPO:0001489":null,"FYPO:0001877":null,"FYPO:0002380":null,"FYPO:0003976":null,"FYPO:0006616":null,"FYPO:0007701":null,"FYPO:0008029":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: PBO:0029020
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_protein_phosphorylation_during_mitotic_M_phase","termid":"PBO:0029020"}


id: MOD:00126
data:
  {"annotated_genes":["SJAG_00464"],"annotation_feature_type":"gene","cv_annotations":{"PSI-MOD":[{"annotations":[82466],"is_not":false,"summary":null,"term":"MOD:00126"}]},"cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to N6-biotinyl-L-lysine.","definition_xrefs":["DeltaMass:305","PubMed:16109483","PubMed:3178228","RESID:AA0117","Unimod:3#K","PubMed:7948875","PubMed:8747466"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N6-acylated L-lysine","termid":"MOD:01875"},{"relation_name":"is_a","term_name":"biotinylated residue","termid":"MOD:01885"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00464":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01875"}],"interesting_parent_ids":["MOD:01875"],"is_obsolete":false,"name":"N6-biotinyl-L-lysine","references_by_uniquename":{"PMID:36408920":null},"synonyms":[{"name":"(2S)-2-amino-6-(5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoylamino)hexanoic acid","type":"exact"},{"name":"(3aS-(3aalpha,4beta,6aalpha))-N6-(5-(hexahydro-2-oxo-1H-thieno(3,4-d)imidazol-4-yl)-1-oxopentyl)-L-lysine","type":"exact"},{"name":"Biotin","type":"related"},{"name":"Biotinylation","type":"related"},{"name":"MOD_RES N6-biotinyllysine","type":"exact"},{"name":"N6-[5-((3aS,4S,6aR)-hexahydro-2-oxo-1H-thieno[3,4-d]imidazol-4-yl)-1-oxopentyl]-L-lysine","type":"exact"},{"name":"N6-biotinyl-L-lysine","type":"exact"},{"name":"N6-biotinyllysine","type":"exact"},{"name":"N6BtnLys","type":"exact"},{"name":"biocytin","type":"exact"},{"name":"biotinyl lysyl","type":"exact"},{"name":"epsilon-N-biotinyllysine","type":"exact"}],"termid":"MOD:00126","terms_by_termid":{"MOD:00126":null}}


id: PBO:0035751
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-growth_auxotrophic_for_tryptophan","termid":"PBO:0035751"}


id: MOD:00996
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3'-bromo-L-tyrosine","termid":"MOD:01025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(81)Br labeled 3'-bromotyrosine","termid":"MOD:00996"}


id: GO:0050307
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sucrose 6F-phosphate + H2O = sucrose + phosphate.","definition_xrefs":["MetaCyc:SUCROSE-PHOSPHATASE-RXN","EC:3.1.3.24"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sugar-phosphatase activity","termid":"GO:0050308"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016788","GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"sucrose-phosphate phosphatase activity","secondary_identifiers":["RHEA:19289","KEGG_REACTION:R06211","KEGG_REACTION:R00805"],"synonyms":[{"name":"sucrose-6F-phosphate phosphohydrolase activity","type":"exact"},{"name":"sucrose-phosphate phosphohydrolase activity","type":"related"}],"termid":"GO:0050307"}


id: PBO:0012293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome segregation impaired protein 1","termid":"PBO:0012293"}


id: MONDO:0009903
data:
  {"annotated_genes":["SJAG_00197"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87186],"is_not":false,"summary":null,"term":"MONDO:0009903"}]},"cv_name":"mondo","definition":"Postaxial acrofacial dysostosis (POADS) is a type of acrofacial dysostosis characterized by mandibular and malar hypoplasia, small and cup-shaped ears, lower lid ectropion, and symmetrical postaxial limb deficiencies with absence of the fifth digital ray and ulnar hypoplasia.","definition_xrefs":["Orphanet:246"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete syndrome or malformation associated with head and neck malformations (obsolete MONDO:0015501)","termid":"MONDO:0015501"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"acrofacial dysostosis","termid":"MONDO:0018237"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00197":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"postaxial acrofacial dysostosis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NORD:1448","MESH:C537680","OMIM:263750","SCTID:66038001","UMLS:C0265257","DOID:0111259","icd11.foundation:70602060","GARD:8410","ICD9:759.89","MEDGEN:120522"],"synonyms":[{"name":"GWAFD","type":"related"},{"name":"Genee-Wiedemann acrofacial dysostosis","type":"related"},{"name":"Genee-Wiedemann syndrome","type":"related"},{"name":"Mandibulfacial dysostosis with postaxial limb anomalies","type":"exact"},{"name":"Miller Syndrome","type":"exact"},{"name":"Miller syndrome","type":"exact"},{"name":"POADS","type":"exact"},{"name":"POADS syndrome","type":"related"},{"name":"Wildervanck-Smith syndrome","type":"related"},{"name":"acrofacial dysostosis, Genee-Wiedmann type","type":"exact"},{"name":"postaxial acrodysostosis","type":"exact"},{"name":"postaxial acrofacial dysostosis","type":"exact"},{"name":"postaxial acrofacial dysostosis (POADS) syndrome","type":"related"}],"termid":"MONDO:0009903","terms_by_termid":{"MONDO:0009903":null},"xrefs":{"Monarch":{"xref_id":"0009903"}}}


id: PBO:0054246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1628","termid":"PBO:0054246"}


id: GO:0046344
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ecdysteroids, a group of polyhydroxylated ketosteroids which initiate post-embryonic development.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid catabolic process","termid":"GO:0006706"},{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"},{"relation_name":"is_a","term_name":"hormone catabolic process","termid":"GO:0042447"},{"relation_name":"is_a","term_name":"ecdysteroid metabolic process","termid":"GO:0045455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"ecdysteroid catabolic process","synonyms":[{"name":"ecdysteroid breakdown","type":"exact"},{"name":"ecdysteroid catabolism","type":"exact"},{"name":"ecdysteroid degradation","type":"exact"}],"termid":"GO:0046344"}


id: PBO:0045324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dedicator of cytokinesis 4","termid":"PBO:0045324"}


id: GO:0005861
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"striated muscle thin filament","termid":"GO:0005865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0015629","GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"troponin complex","termid":"GO:0005861"}


id: MONDO:0013463
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any dextro-looped transposition of the great arteries in which the cause of the disease is a mutation in the GDF1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"dextro-looped transposition of the great arteries","termid":"MONDO:0019443"},{"relation_name":"is_a","term_name":"congenital heart defects, multiple types","termid":"MONDO:0000119"},{"relation_name":"is_a","term_name":"dextro-looped transposition of the great arteries","termid":"MONDO:0019443"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"congenital heart defects, multiple types, 6","secondary_identifiers":["DOID:0060772","OMIM:613854","UMLS:C3151221","MEDGEN:462571"],"synonyms":[{"name":"CHTD6","type":"related"},{"name":"DTGA3","type":"exact"},{"name":"GDF1 dextro-looped transposition of the great arteries","type":"exact"},{"name":"congenital heart defects, multiple types, 6","type":"exact"},{"name":"dextro-looped transposition of the great arteries 3","type":"exact"},{"name":"dextro-looped transposition of the great arteries caused by mutation in GDF1","type":"exact"},{"name":"dextro-looped transposition of the great arteries type 3","type":"exact"},{"name":"transposition of the great arteries, dextro-looped 3","type":"related"},{"name":"transposition of the great arteries, dextro-looped 3, formerly","type":"related"},{"name":"transposition of the great arteries, dextro-looped type 3","type":"exact"}],"termid":"MONDO:0013463","xrefs":{"Monarch":{"xref_id":"0013463"}}}


id: PBO:0004321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-nitrophenylphosphatase","termid":"PBO:0004321"}


id: GO:0080074
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a caffeoyl group to a nitrogen atom on the spermidine molecule.","definition_xrefs":["PMID:19077165"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acyltransferase activity","termid":"GO:0016410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"spermidine:caffeoyl CoA N-acyltransferase activity","termid":"GO:0080074"}


id: PBO:0049709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyaluronan synthase 3","termid":"PBO:0049709"}


id: PBO:0113058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of mitochondrial small ribosomal subunit; similar to E. coli S13 ribosomal protein; participates in controlling sporulation efficiency; localizes to vacuole in response to H2O2; localizes to peroxisomes in glucose-growing cells","termid":"PBO:0113058"}


id: GO:0008535
data:
  {"annotated_genes":["SJAG_01140","SJAG_05398","SJAG_02975","SJAG_03296","SJAG_06046","SJAG_03337","SJAG_05302","SJAG_04116","SJAG_00449","SJAG_05199","SJAG_04348","SJAG_00852","SJAG_06468","SJAG_04553","SJAG_03046","SJAG_02229","SJAG_02979","SJAG_04603","SJAG_03322","SJAG_02480","SJAG_01996","SJAG_06392"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73705,74323,96470,103515,109322,80290,93471,91039,108695,120228,90842,94298,78469,72113,109004,105836,62629,61272,96485,118918,105580,59287],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033617"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms.","definition_xrefs":["GOC:jl","PMID:32311046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytochrome complex assembly","termid":"GO:0017004"}],"gene_count":22,"genes_by_uniquename":{"SJAG_00449":null,"SJAG_00852":null,"SJAG_01140":null,"SJAG_01996":null,"SJAG_02229":null,"SJAG_02480":null,"SJAG_02975":null,"SJAG_02979":null,"SJAG_03046":null,"SJAG_03296":null,"SJAG_03322":null,"SJAG_03337":null,"SJAG_04116":null,"SJAG_04348":null,"SJAG_04553":null,"SJAG_04603":null,"SJAG_05199":null,"SJAG_05302":null,"SJAG_05398":null,"SJAG_06046":null,"SJAG_06392":null,"SJAG_06468":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"respiratory chain complex IV assembly","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"cytochrome c oxidase biogenesis","type":"broad"},{"name":"cytochrome c oxidase complex assembly","type":"exact"}],"termid":"GO:0008535","terms_by_termid":{"GO:0033617":null}}


id: GO:0034737
data:
  {"annotated_genes":["SJAG_04049","SJAG_04059"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78050,82042],"is_not":false,"summary":null,"term":"GO:0034737"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acyl-CoA + ergosterol = CoA + ergosterol ester.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sterol O-acyltransferase activity","termid":"GO:0004772"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04049":null,"SJAG_04059":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016746","GO:0003824"],"is_obsolete":false,"name":"ergosterol O-acyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0034737","terms_by_termid":{"GO:0034737":null}}


id: FYECO:0000313
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which TOP-53 (a drug that targets topoisomerase II) was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ TOP-53","termid":"FYECO:0000313"}


id: MONDO:0001434
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spondylitis","termid":"MONDO:0003937"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inflammatory spondylopathy","secondary_identifiers":["ICD9:720.89","ICD9:720.81","DOID:12105","ICD9:720.9","MEDGEN:215416","UMLS:C0949690","SCTID:202649003"],"synonyms":[{"name":"inflammatory spondylopathies in disease EC","type":"exact"},{"name":"inflammatory spondylopathies in disease classified elsewhere","type":"narrow"},{"name":"inflammatory spondylopathy in disease classified elsewhere","type":"narrow"}],"termid":"MONDO:0001434","xrefs":{"Monarch":{"xref_id":"0001434"}}}


id: PBO:0049958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIG1 hypoxia inducible domain family member 1A pseudogene 4","termid":"PBO:0049958"}


id: GO:0008630
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced by the detection of DNA damage, and ends when the execution phase of apoptosis is triggered.","definition_xrefs":["GOC:go_curators","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA damage response","termid":"GO:0006974"},{"relation_name":"is_a","term_name":"intrinsic apoptotic signaling pathway","termid":"GO:0097193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"intrinsic apoptotic signaling pathway in response to DNA damage","synonyms":[{"name":"DNA damage response, signal transduction resulting in induction of apoptosis","type":"related"}],"termid":"GO:0008630"}


id: MONDO:0019181
data:
  {"annotated_genes":["SJAG_04616","SJAG_01047","SJAG_00845","SJAG_03909","SJAG_02878","SJAG_04022","SJAG_00786","SJAG_05326","SJAG_02422","SJAG_01412","SJAG_02058","SJAG_03471","SJAG_01269","SJAG_02238"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86812],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010659"},{"annotations":[87692],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0026723"},{"annotations":[87817,87816],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0958200"},{"annotations":[87799],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0975828"},{"annotations":[87097],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010497"},{"annotations":[87708],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0049222"},{"annotations":[88707],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010447"},{"annotations":[88857,88856],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010361"},{"annotations":[88692],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010451"},{"annotations":[87991,87992],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010313"},{"annotations":[86813],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010660"}]},"cv_name":"mondo","definition":"Nonspecific X-linked intellectual deficiencies (MRX) belong to the family of sex-linked intellectual deficiencies (XLMR). In contrast to syndromic or specific X-linked intellectual deficiencies (MRXS), which also present with associated physical, neurological and/or psychiatric manifestations, intellectual deficiency is the only symptom of MRX.","definition_xrefs":["Orphanet:777"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic intellectual disability","termid":"MONDO:0000509"},{"relation_name":"is_a","term_name":"X-linked intellectual disability","termid":"MONDO:0100284"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00786":null,"SJAG_00845":null,"SJAG_01047":null,"SJAG_01269":null,"SJAG_01412":null,"SJAG_02058":null,"SJAG_02238":null,"SJAG_02422":null,"SJAG_02878":null,"SJAG_03471":null,"SJAG_03909":null,"SJAG_04022":null,"SJAG_04616":null,"SJAG_05326":null},"genotype_count":0,"is_obsolete":false,"name":"non-syndromic X-linked intellectual disability","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:502019","OMIMPS:309530","DOID:0050776","GARD:18640","MESH:C564490","UMLS:C3501611"],"synonyms":[{"name":"X-linked non-specific intellectual disability","type":"exact"},{"name":"X-linked non-syndromic intellectual disability","type":"exact"},{"name":"intellectual disability, X-linked, nonsyndromic","type":"exact"},{"name":"intellectual disability, nonsyndromic, X-linked","type":"exact"},{"name":"isolated X-linked intellectual disability","type":"related"},{"name":"mental retardation, X-linked, nonsyndromic","type":"exact"},{"name":"mental retardation, nonsyndromic, X-linked","type":"exact"},{"name":"non-specific X-linked intellectual disability","type":"exact"},{"name":"non-specific X-linked mental retardation","type":"exact"},{"name":"non-syndromic X-linked intellectual disability","type":"exact"},{"name":"non-syndromic intellectual disability, X-linked","type":"exact"},{"name":"nonsyndromic X-linked intellectual disability","type":"exact"}],"termid":"MONDO:0019181","terms_by_termid":{"MONDO:0010313":null,"MONDO:0010361":null,"MONDO:0010447":null,"MONDO:0010451":null,"MONDO:0010497":null,"MONDO:0010659":null,"MONDO:0010660":null,"MONDO:0026723":null,"MONDO:0049222":null,"MONDO:0958200":null,"MONDO:0975828":null},"xrefs":{"Monarch":{"xref_id":"0019181"}}}


id: PBO:0089931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex platform subcomplex scaffold subunit Apc15","termid":"PBO:0089931"}


id: GO:0034345
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of type III interferon production. Interferon lambda is the only member of the type III interferon found so far.","definition_xrefs":["GOC:add","ISBN:0126896631","PMID:15546383","PMID:16734557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of type III interferon production","termid":"GO:0034344"},{"relation_name":"negatively_regulates","term_name":"type III interferon production","termid":"GO:0034343"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of type III interferon production","synonyms":[{"name":"down regulation of type III interferon production","type":"exact"},{"name":"down-regulation of type III interferon production","type":"exact"},{"name":"downregulation of type III interferon production","type":"exact"},{"name":"inhibition of type III interferon production","type":"narrow"},{"name":"negative regulation of type III IFN production","type":"exact"}],"termid":"GO:0034345"}


id: MOD:01523
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The protein modification reporter fragment produced by an Applied Biosystems iTRAQ4plex 115 reagent derivatized residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"iTRAQ4plex-115 reporter+balance reagent acylated residue","termid":"MOD:01492"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter fragment","termid":"MOD:01521"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ4plex-115 reporter fragment","synonyms":[{"name":"4-methyl-1-methylidenepiperazin-1-ium","type":"exact"}],"termid":"MOD:01523"}


id: PBO:0075718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorcin","termid":"PBO:0075718"}


id: PBO:0001591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone demethylase Jmj1 (predicted)","termid":"PBO:0001591"}


id: PBO:0089496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma tubulin complex linker, pericentrin/kendrin Pcp1","termid":"PBO:0089496"}


id: PR:O94403
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC126.11c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94403"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized RNA-binding protein C126.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC126.11c","synonyms":[{"name":"Spom972h-SPCC126.11c","type":"exact"}],"termid":"PR:O94403"}


id: GO:0006190
data:
  {"annotated_genes":["SJAG_03096"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71651],"is_not":false,"summary":null,"term":"GO:0006190"}]},"cv_name":"biological_process","definition":"Any process that generates inosine, hypoxanthine riboside, from derivatives of it without de novo synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleoside salvage","termid":"GO:0006166"},{"relation_name":"is_a","term_name":"inosine biosynthetic process","termid":"GO:0046103"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03096":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"inosine salvage","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"adenine, hypoxanthine and their nucleoside salvage","type":"related"},{"name":"guanine, xanthine and their nucleoside salvage","type":"related"}],"termid":"GO:0006190","terms_by_termid":{"GO:0006190":null}}


id: PBO:0079293
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TTLL10 antisense RNA 1","termid":"PBO:0079293"}


id: MONDO:0100511
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The sudden loss of all heart activity due to an irregular heart rhythm.","direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac rhythm disease","termid":"MONDO:0007263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"sudden cardiac arrest","secondary_identifiers":["MESH:C1720824","icd11.foundation:264292672","UMLS:C1720824","MEDGEN:354518"],"termid":"MONDO:0100511","xrefs":{"Monarch":{"xref_id":"0100511"}}}


id: GO:1905841
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxidopamine stimulus.","definition_xrefs":["PMID:23721876","GO_REF:0000071","GOC:rz","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to catecholamine","termid":"GO:0071869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to oxidopamine","termid":"GO:1905841"}


id: MONDO:0001033
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"corneal ulcer","termid":"MONDO:0004577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"mycotic corneal ulcer","secondary_identifiers":["SCTID:397977001","DOID:10440","icd11.foundation:1756043578","MEDGEN:509769","UMLS:C0155071","ICD9:370.05","ICD10CM:H16.06"],"termid":"MONDO:0001033","xrefs":{"Monarch":{"xref_id":"0001033"}}}


id: PBO:0089828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERCC1 DNA repair endonuclease non-catalytic subunit Swi10","termid":"PBO:0089828"}


id: GO:0015988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The transport of protons across a membrane and against an electrochemical gradient, using energy from a source such as ATP hydrolysis, light, or electron transport.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton transmembrane transport","termid":"GO:1902600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"energy coupled proton transmembrane transport, against electrochemical gradient","termid":"GO:0015988"}


id: GO:0007054
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of the spindle during meiosis I of a meiotic cell cycle in males. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle assembly involved in male meiosis","termid":"GO:0007053"},{"relation_name":"part_of","term_name":"male meiosis I","termid":"GO:0007141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0140013","GO:0007049","GO:0044085","GO:0000226","GO:0007010","GO:0008150"],"is_obsolete":false,"name":"spindle assembly involved in male meiosis I","synonyms":[{"name":"male meiosis I spindle assembly","type":"related"}],"termid":"GO:0007054"}


id: PBO:0053747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 974","termid":"PBO:0053747"}


id: GO:0033770
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: liquiritigenin + O2 + [reduced NADPH--hemoprotein reductase] = 2,4',7-trihydroxyisoflavanone + H2O + [oxidized NADPH--hemoprotein reductase] and (2S)-naringenin + O2 + [reduced NADPH--hemoprotein reductase] = 2,4',5,7-tetrahydroxyisoflavanone + H2O + [oxidized NADPH--hemoprotein reductase].","definition_xrefs":["EC:1.14.14.87"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2-hydroxyisoflavanone synthase activity","secondary_identifiers":["GO:0102604","GO:0102668"],"synonyms":[{"name":"isoflavonoid synthase","type":"broad"}],"termid":"GO:0033770"}


id: PBO:0028038
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_spindle_disassembly","termid":"PBO:0028038"}


id: GO:0044607
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism has a negative effect on the functioning of the host's endothelial cells.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete disruption by symbiont of host endothelial cells (obsolete GO:0044607)","termid":"GO:0044607"}


id: GO:0097538
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex located on the cilium membrane in the ciliary transition zone; it is connected to the cilium axoneme via Y-shaped links.","definition_xrefs":["GOC:cilia","PMID:4554367","PMID:22653444"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"part_of","term_name":"ciliary transition zone","termid":"GO:0035869"},{"relation_name":"part_of","term_name":"ciliary membrane","termid":"GO:0060170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"ciliary necklace","synonyms":[{"name":"cilial necklace","type":"exact"},{"name":"cilium necklace","type":"exact"}],"termid":"GO:0097538"}


id: PBO:0052486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 1","termid":"PBO:0052486"}


id: GO:0080003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving the triterpene thalianol.","definition_xrefs":["PMID:18356490"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tricyclic triterpenoid metabolic process","termid":"GO:0010683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"thalianol metabolic process","synonyms":[{"name":"thalianol metabolism","type":"exact"}],"termid":"GO:0080003"}


id: MONDO:0018998
data:
  {"annotated_genes":["SJAG_00742","SJAG_01298","SJAG_02623","SJAG_04003","SJAG_02889"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88710],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013454"},{"annotations":[87231],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012990"},{"annotations":[88768],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032794"},{"annotations":[87409],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012056"},{"annotations":[86887],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0060650"}]},"cv_name":"mondo","definition":"Leber congenital amaurosis (LCA) is a retinal dystrophy defined by blindness and responses to electrophysiological stimulation (Ganzfeld electroretinogram (ERG)) below threshold, associated with severe visual impairment within the first year of life.","definition_xrefs":["Orphanet:65"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00742":null,"SJAG_01298":null,"SJAG_02623":null,"SJAG_02889":null,"SJAG_04003":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005328"],"is_obsolete":false,"name":"Leber congenital amaurosis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NCIT:C129075","NORD:1351","SCTID:193413001","ICD10CM:H35.5","UMLS:C0339527","MedDRA:10070667","DOID:14791","GARD:634","OMIMPS:204000","MEDGEN:137922","MESH:D057130","icd11.foundation:650490256"],"synonyms":[{"name":"LCA","type":"exact"},{"name":"Leber congenital amaurosis","type":"exact"},{"name":"Leber's amaurosis","type":"exact"},{"name":"Leber's congenital amaurosis","type":"exact"},{"name":"Leber's congenital tapetoretinal degeneration","type":"related"},{"name":"Leber's congenital tapetoretinal dysplasia","type":"related"},{"name":"Leber's disease","type":"exact"},{"name":"amaurosis congenita of Leber","type":"exact"},{"name":"congenital absence of the rods and cones","type":"related"},{"name":"congenital retinal blindness","type":"related"}],"termid":"MONDO:0018998","terms_by_termid":{"MONDO:0012056":null,"MONDO:0012990":null,"MONDO:0013454":null,"MONDO:0032794":null,"MONDO:0060650":null},"xrefs":{"Monarch":{"xref_id":"0018998"}}}


id: PBO:0078204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 6-6","termid":"PBO:0078204"}


id: PBO:0063027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 7","termid":"PBO:0063027"}


id: PBO:0064325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleiotropic regulator 1","termid":"PBO:0064325"}


id: MONDO:0013155
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy-dystroglycanopathy, type B","termid":"MONDO:0000172"},{"relation_name":"is_a","term_name":"myopathy caused by variation in POMGNT1","termid":"MONDO:0700068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0024322","MONDO:0002320","MONDO:0005066"],"is_obsolete":false,"name":"muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B3","secondary_identifiers":["DOID:0112378","MEDGEN:461762","GARD:18455","UMLS:C3150412","OMIM:613151"],"synonyms":[{"name":"MDDGB3","type":"related"},{"name":"congenital muscular dystrophy-POMGNT1 related","type":"exact"},{"name":"muscular dystrophy, congenital, POMGNT1-related","type":"related"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B, 3","type":"related"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 3","type":"related"}],"termid":"MONDO:0013155","xrefs":{"Monarch":{"xref_id":"0013155"}}}


id: GO:0038014
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which internalization of an insulin receptor stops, prevents, or reduces the frequency, rate or extent of insulin receptor signal transduction. Internalization of insulin in association with its receptor clears insulin from the circulation and is necessary for subsequent insulin dissociation from the receptor and insulin degradation.","definition_xrefs":["GOC:bf","PMID:18492485","GOC:signaling","PMID:7821727","PMID:7978876","PMID:9609114"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction by receptor internalization","termid":"GO:0038011"},{"relation_name":"is_a","term_name":"insulin receptor internalization","termid":"GO:0038016"},{"relation_name":"is_a","term_name":"negative regulation of insulin receptor signaling pathway","termid":"GO:0046627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0023052","GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of insulin receptor signaling pathway by insulin receptor internalization","synonyms":[{"name":"agonist-stimulated insulin receptor internalization","type":"broad"},{"name":"negative regulation of insulin receptor signalling pathway by insulin receptor internalization","type":"exact"}],"termid":"GO:0038014"}


id: FYPO:0000564
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of cellular respiration is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular respiration","termid":"FYPO:0000078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased rate of cellular respiration","synonyms":[{"name":"decreased rate of cellular respiration during mitotic cell cycle","type":"related"},{"name":"decreased rate of cellular respiration during vegetative growth","type":"exact"},{"name":"decreased rate of respiration","type":"broad"},{"name":"decreased rate of respiratory metabolism","type":"exact"},{"name":"reduced rate of cellular respiration","type":"exact"},{"name":"respiratory metabolism: decreased rate","type":"related"}],"termid":"FYPO:0000564"}


id: PBO:0089249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shelterin complex subunit Taz1","termid":"PBO:0089249"}


id: FYPO:0000023
data:
  {"alleles_by_uniquename":{"SJAG_02013:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02013","name":"pyp1delta","uniquename":"SJAG_02013:allele-1"},"SJAG_03048:allele-1":{"allele_type":"amino_acid_mutation","description":"G146D","gene_uniquename":"SJAG_03048","name":"cdc2-1w","uniquename":"SJAG_03048:allele-1"},"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-2"},"SJAG_04280:allele-3":{"allele_type":"amino_acid_mutation","description":"G788E","gene_uniquename":"SJAG_04280","name":"wee1-G788E","uniquename":"SJAG_04280:allele-3"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121468,121472,121469,121170],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0000648"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell has an abnormally low volume.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell size","termid":"FYPO:0001127"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02013":null,"SJAG_03048":null,"SJAG_04280":null},"genotype_count":4,"genotypes_by_uniquename":{"cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc2-1w(G146D aa)","display_uniquename":"cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03048:allele-1","expression":"Not assayed or wild type"}]}]},"pyp1delta":{"display_name":"pyp1delta","display_uniquename":"pyp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02013:allele-1","expression":"Null"}]}]},"wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"wee1-G788E(aa)","display_uniquename":"wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-3","expression":"Not assayed or wild type"}]}]},"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000005"],"is_obsolete":false,"name":"small cell","references_by_uniquename":{"PMID:30664646":null,"PMID:31150379":null},"single_locus_annotated_genes":["SJAG_02013","SJAG_03048","SJAG_04280"],"single_locus_genotype_uniquenames":["pyp1delta","cdc2-1w-G146D-amino_acid_mutation-expression-not_assayed_or_wild_type","wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"cell size: decreased","type":"related"},{"name":"decreased cell size","type":"exact"},{"name":"reduced cell size","type":"exact"}],"termid":"FYPO:0000023","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000137":null,"FYECO:0000338":null,"FYPO:0000648":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: GO:0003913
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the repair of a photoproduct resulting from ultraviolet irradiation of two adjacent pyrimidine residues in DNA.","definition_xrefs":["GOC:mah","PMID:11124949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-carbon lyase activity","termid":"GO:0016830"},{"relation_name":"is_a","term_name":"catalytic activity, acting on DNA","termid":"GO:0140097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0016829","GO:0140097","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"DNA photolyase activity","termid":"GO:0003913"}


id: GO:0004984
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with an odorant and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity in response to detection of smell.","definition_xrefs":["PMID:19135896","GOC:bf","PMID:21041441","GOC:dph","GOC:sart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"olfactory receptor activity","synonyms":[{"name":"odorant receptor activity","type":"exact"}],"termid":"GO:0004984"}


id: PBO:0062082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily A member 13 pseudogene","termid":"PBO:0062082"}


id: GO:0015447
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. This term was not defined before being made obsolete.","definition_xrefs":["GOC:mtg_transport"],"gene_count":0,"genotype_count":0,"name":"obsolete type II protein secretor activity (obsolete GO:0015447)","synonyms":[{"name":"type II protein secretor activity","type":"exact"}],"termid":"GO:0015447"}


id: GO:0002231
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a stimulus from an oomycetes is received and converted into a molecular signal.","definition_xrefs":["PMID:15922649","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to oomycetes","termid":"GO:0002239"},{"relation_name":"is_a","term_name":"detection of other organism","termid":"GO:0098543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of oomycetes","termid":"GO:0002231"}


id: PBO:0046202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ELOA pseudogene 1","termid":"PBO:0046202"}


id: MONDO:0001166
data:
  {"annotated_genes":["SJAG_03994"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87931],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013898"}]},"cv_name":"mondo","definition":"Inflammation of renal tissue.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney disorder","termid":"MONDO:0005240"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03994":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"nephritis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:52845002","ICD9:583.89","ICD9:583.9","DOID:10952","NCIT:C26833","EFO:1002050","MESH:D009393","ICD9:583.7","UMLS:C0027697","MEDGEN:14328"],"synonyms":[{"name":"inflammation of kidney","type":"exact"},{"name":"kidney inflammation","type":"exact"}],"termid":"MONDO:0001166","terms_by_termid":{"MONDO:0013898":null},"xrefs":{"Monarch":{"xref_id":"0001166"}}}


id: MONDO:0015248
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, genetic, multiple congenital anomalies/dysmorphic syndrome characterized by cerebellar-like ataxia, photosensitivity (mainly of the face and trunk), short stature and intellectual disability. Additional features include clinodactyly, single palmar transverse crease, high-arched palate, pseudohypertrophy of the calves and aortic valve lesions. There have been no further descriptions in the literature since 1983.","definition_xrefs":["Orphanet:1184"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary ataxia","termid":"MONDO:0100309"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ataxia-photosensitivity-short stature syndrome","secondary_identifiers":["UMLS:C4751230","GARD:2287","MEDGEN:1655873"],"synonyms":[{"name":"Fenton Wilkinson Toselano syndrome","type":"exact"},{"name":"Fenton-Wilkinson-Toselano syndrome","type":"exact"}],"termid":"MONDO:0015248","xrefs":{"Monarch":{"xref_id":"0015248"}}}


id: PBO:0029287
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_Mmi1_focus","termid":"PBO:0029287"}


id: PBO:0034720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIH complex DNA helicase (ERCC-3) subunit Ptr8","termid":"PBO:0034720"}


id: GO:0042332
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a motile cell or organism in response to gravity.","definition_xrefs":["GOC:jid","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to gravity","termid":"GO:0009629"},{"relation_name":"is_a","term_name":"taxis","termid":"GO:0042330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"gravitaxis","secondary_identifiers":["GO:0048062"],"synonyms":[{"name":"geotactic behavior","type":"exact"},{"name":"geotactic behaviour","type":"exact"},{"name":"geotaxis","type":"exact"},{"name":"gravitactic behavior","type":"exact"},{"name":"gravitactic behaviour","type":"exact"},{"name":"taxis in response to gravitational stimulus","type":"exact"},{"name":"taxis in response to gravity","type":"exact"}],"termid":"GO:0042332"}


id: PBO:0051639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IMP3 pseudogene 2","termid":"PBO:0051639"}


id: GO:0018393
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of an acetyl group to a non-terminal lysine residue in a protein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"internal protein amino acid acetylation","termid":"GO:0006475"},{"relation_name":"is_a","term_name":"peptidyl-lysine acetylation","termid":"GO:0018394"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"internal peptidyl-lysine acetylation","termid":"GO:0018393"}


id: PBO:0062145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily F member 15","termid":"PBO:0062145"}


id: MONDO:0019778
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Smith-Fineman-Myers syndrome (obsolete MONDO:0019778)","termid":"MONDO:0019778","xrefs":{"Monarch":{"xref_id":"0019778"}}}


id: PBO:0080370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VOPP1 WW domain binding protein","termid":"PBO:0080370"}


id: GO:0042762
data:
  {"annotated_genes":["SJAG_01187","SJAG_02380","SJAG_02406","SJAG_03538"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117342,113225],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001211"},{"annotations":[115541,90852],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090180"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving sulfur, the nonmetallic element sulfur or compounds that contain sulfur.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of metabolic process","termid":"GO:0019222"},{"relation_name":"regulates","term_name":"sulfur compound metabolic process","termid":"GO:0006790"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01187":null,"SJAG_02380":null,"SJAG_02406":null,"SJAG_03538":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"regulation of sulfur metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of sulfur metabolism","type":"exact"},{"name":"regulation of sulphur metabolic process","type":"exact"},{"name":"regulation of sulphur metabolism","type":"exact"}],"termid":"GO:0042762","terms_by_termid":{"GO:0090180":null,"GO:2001211":null}}


id: GO:0072399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that occurs in response to signals generated as a result of cytokinesis checkpoint signaling.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cell cycle checkpoint signaling","termid":"GO:0072396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cytokinesis checkpoint signaling","secondary_identifiers":["GO:0072420"],"synonyms":[{"name":"cytokinesis checkpoint effector process","type":"exact"},{"name":"response to signal involved in cytokinesis checkpoint","type":"exact"}],"termid":"GO:0072399"}


id: GO:1901619
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule as a result of deprivation of nitrogen.","definition_xrefs":["PMID:23074192","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete tRNA methylation in response to nitrogen starvation (obsolete GO:1901619)","termid":"GO:1901619"}


id: GO:0097199
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile, and contributing to the apoptotic signaling pathway.","definition_xrefs":["PMID:11717445","Wikipedia:Caspase","GOC:mtg_apoptosis"],"gene_count":0,"genotype_count":0,"name":"obsolete cysteine-type endopeptidase activity involved in apoptotic signaling pathway (obsolete GO:0097199)","synonyms":[{"name":"activator caspase activity","type":"narrow"},{"name":"apical caspase activity","type":"narrow"},{"name":"cysteine-type endopeptidase activity involved in apoptotic signalling pathway","type":"exact"},{"name":"initiator caspase activity","type":"narrow"}],"termid":"GO:0097199"}


id: GO:0043380
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of memory T cell differentiation.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immune effector process","termid":"GO:0002697"},{"relation_name":"is_a","term_name":"regulation of T cell differentiation","termid":"GO:0045580"},{"relation_name":"is_a","term_name":"regulation of immune response","termid":"GO:0050776"},{"relation_name":"regulates","term_name":"memory T cell differentiation","termid":"GO:0043379"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of memory T cell differentiation","synonyms":[{"name":"regulation of memory T cell development","type":"related"},{"name":"regulation of memory T lymphocyte differentiation","type":"exact"},{"name":"regulation of memory T-cell differentiation","type":"exact"},{"name":"regulation of memory T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0043380"}


id: MONDO:1011457
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Glaucoma that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of orbital region, non-human animal","termid":"MONDO:1011315"},{"relation_name":"is_a","term_name":"disorder of visual system, non-human animal","termid":"MONDO:1011316"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glaucoma, non-human animal","secondary_identifiers":["OMIA:000411"],"termid":"MONDO:1011457","xrefs":{"Monarch":{"xref_id":"1011457"}}}


id: GO:0044008
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The movement of an organism from one host to another (or another place in the environment) by means of a third organism (often an insect or other animal). The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:cc"],"gene_count":0,"genotype_count":0,"name":"obsolete dissemination or transmission of symbiont from host by vector (obsolete GO:0044008)","synonyms":[{"name":"dissemination or transmission of organism from host by vector","type":"exact"}],"termid":"GO:0044008"}


id: PBO:0087329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sorting nexin; involved in retrieval of late-Golgi SNAREs from post-Golgi endosomes to the trans-Golgi network and in cytoplasm to vacuole transport; contains a PX phosphoinositide-binding domain; forms complexes with Snx41p and with Atg20p","termid":"PBO:0087329"}


id: PBO:0057333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 520h","termid":"PBO:0057333"}


id: GO:0015159
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of polysaccharides from one side of a membrane to the other. A polysaccharide is a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.","definition_xrefs":["ISBN:0815340729","GOC:ai","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate transmembrane transporter activity","termid":"GO:0015144"},{"relation_name":"is_a","term_name":"macromolecule transmembrane transporter activity","termid":"GO:0022884"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"polysaccharide transmembrane transporter activity","termid":"GO:0015159"}


id: FYPO:0005275
data:
  {"alleles_by_uniquename":{"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121099,121288],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004318"},{"annotations":[121452,121450,121451],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000324"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which a cell does not execute a mitotic cell cycle phase transition normally.","definition_xrefs":["PomBase:mah","GO:0044772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle process","termid":"FYPO:0002737"},{"relation_name":"is_a","term_name":"abnormal cell cycle phase transition","termid":"FYPO:0005273"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01330":null,"SJAG_01956":null,"SJAG_03351":null,"SJAG_03575":null},"genotype_count":4,"genotypes_by_uniquename":{"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"mad2delta":{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal mitotic cell cycle phase transition","references_by_uniquename":{"PMID:21802294":null,"PMID:23786411":null,"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_01330","SJAG_01956","SJAG_03575","SJAG_03351"],"single_locus_genotype_uniquenames":["nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","mad2delta","apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type"],"termid":"FYPO:0005275","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYPO:0000324":null,"FYPO:0004318":null}}


id: MONDO:1012129
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin A deficiency, non-human animal","termid":"MONDO:1011726"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin A deficiency, gray wolf","secondary_identifiers":["OMIA:000552-9612"],"termid":"MONDO:1012129","xrefs":{"Monarch":{"xref_id":"1012129"}}}


id: PBO:0086423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative GTPase with a specific role in RNA pol II and polIII biogenesis; involved in the assembly and subsequent nuclear import of RNA polymerases II and III; required for establishment of sister chromatid cohesion; contains a Gly-Pro-Asn motif in the G domain; similar to Npa3p and Gpn3p; highly conserved across species and homologous to human gene GPN2/ATPBD1B","termid":"PBO:0086423"}


id: PBO:0004318
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial Mam33 family protein (predicted)","termid":"PBO:0004318"}


id: PBO:0062509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily I member 1 pseudogene","termid":"PBO:0062509"}


id: GO:0004088
data:
  {"annotated_genes":["SJAG_00964","SJAG_00412","SJAG_00392"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72109,73642,108355],"is_not":false,"summary":null,"term":"GO:0004088"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: hydrogencarbonate + L-glutamine + 2 ATP + H2O = carbamoyl phosphate + L-glutamate + 2 ADP + phosphate + 2 H+.","definition_xrefs":["RHEA:18633"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-nitrogen ligase activity, with glutamine as amido-N-donor","termid":"GO:0016884"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00392":null,"SJAG_00412":null,"SJAG_00964":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:CARBPSYN-RXN","EC:6.3.5.5","Reactome:R-HSA-73577"],"synonyms":[{"name":"CPS activity","type":"related"},{"name":"GD-CPSase activity","type":"related"},{"name":"carbamoyl phosphate synthase (glutamine-hydrolyzing) activity","type":"exact"},{"name":"carbamoyl phosphate synthetase activity","type":"related"},{"name":"carbamoyl-phosphate synthase (glutamine-hydrolysing) activity","type":"related"},{"name":"carbamoyl-phosphate synthetase (glutamine-hydrolysing) activity","type":"related"},{"name":"carbamoyl-phosphate synthetase (glutamine-hydrolyzing) activity","type":"related"},{"name":"carbamoylphosphate synthetase II activity","type":"related"},{"name":"carbamyl phosphate synthetase (glutamine) activity","type":"related"},{"name":"carbon-dioxide::L-glutamine amido-ligase (ADP-forming, carbamate-phosphorylating) activity","type":"related"},{"name":"glutamine-dependent carbamoyl-phosphate synthase activity","type":"related"},{"name":"glutamine-dependent carbamyl phosphate synthetase activity","type":"related"},{"name":"hydrogen-carbonate:L-glutamine amido-ligase (ADP-forming, carbamate-phosphorylating) activity","type":"related"}],"termid":"GO:0004088","terms_by_termid":{"GO:0004088":null}}


id: MONDO:0007274
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carpal displacement","secondary_identifiers":["OMIM:115400","MEDGEN:348468","UMLS:C1861847"],"synonyms":[{"name":"carpal bossing","type":"related"},{"name":"carpal displacement","type":"exact"}],"termid":"MONDO:0007274","xrefs":{"Monarch":{"xref_id":"0007274"}}}


id: PBO:0089789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk16","termid":"PBO:0089789"}


id: MONDO:0006586
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition in which patients produce skin lesions through repetitive, compulsive excoriation of their skin.","definition_xrefs":["EFO:1000741"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dermatitis","termid":"MONDO:0002406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"neurotic excoriation","secondary_identifiers":["UMLS:C1274184","Wikipedia:Neurotic_excoriations","SCTID:402736003","DOID:9165","ICD9:300.19","MEDGEN:697535","ICD9:698.4"],"synonyms":[{"name":"dermatitis artefacta","type":"exact"},{"name":"dermatitis factitia","type":"exact"},{"name":"dermatitis factitia [artefacta]","type":"exact"},{"name":"dermatitis ficta","type":"exact"},{"name":"factitious skin disease","type":"exact"}],"termid":"MONDO:0006586","xrefs":{"Monarch":{"xref_id":"0006586"}}}


id: PBO:0080723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WT1 antisense RNA","termid":"PBO:0080723"}


id: PBO:0085847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the endoplasmic reticulum; msc7 mutants are defective in directing meiotic recombination events to homologous chromatids","termid":"PBO:0085847"}


id: GO:0005132
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interferon-type I receptor, a heterodimeric complex composed of an alpha subunit (IFNAR1) and a beta subunit (IFNAR2).","definition_xrefs":["GOC:signaling","GOC:ai","PMID:17502368"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"},{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"type I interferon receptor binding","synonyms":[{"name":"IFNAR binding","type":"related"},{"name":"IFNAR1 binding","type":"narrow"},{"name":"IFNAR2 binding","type":"narrow"},{"name":"interferon-alpha/beta","type":"narrow"},{"name":"interferon-alpha/beta receptor binding","type":"exact"},{"name":"interferon-alpha/beta receptor ligand","type":"narrow"}],"termid":"GO:0005132"}


id: GO:0043090
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of amino acids into a cell or organelle.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transport","termid":"GO:0006865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"amino acid import","synonyms":[{"name":"amino acid uptake","type":"exact"}],"termid":"GO:0043090"}


id: GO:0009749
data:
  {"annotated_genes":["SJAG_02444","SJAG_04312","SJAG_01254","SJAG_01754","SJAG_03081","SJAG_00574","SJAG_00472","SJAG_04026","SJAG_01699"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96037,110854,103666,111365,108678,108328,117393,107732,118423],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010619"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to hexose","termid":"GO:0009746"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00472":null,"SJAG_00574":null,"SJAG_01254":null,"SJAG_01699":null,"SJAG_01754":null,"SJAG_02444":null,"SJAG_03081":null,"SJAG_04026":null,"SJAG_04312":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to glucose","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"response to glucose stimulus","type":"exact"}],"termid":"GO:0009749","terms_by_termid":{"GO:0010619":null}}


id: PBO:0029985
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_ubiquitin_ligase_activity","termid":"PBO:0029985"}


id: MONDO:0000989
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A contagious viral infection caused by the mumps virus. Symptoms include swollen and tender parotid glands, fever, muscle aches and fatigue. Due to vaccination programs, mumps has become a rare disease.","definition_xrefs":["NCIT:C29888"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Paramyxoviridae infectious disease","termid":"MONDO:0005896"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mumps infectious disease","secondary_identifiers":["DOID:10264","MONDO:0005863","SCTID:36989005","MESH:D009107","UMLS:C0026780","MEDGEN:44521","EFO:0007383","ICD9:072","ICD10CM:B26","MESH:D019351"],"synonyms":[{"name":"Mumps virus caused disease or disorder","type":"exact"},{"name":"Mumps virus disease or disorder","type":"exact"},{"name":"Mumps virus infectious disease","type":"exact"},{"name":"epidemic parotitis","type":"exact"},{"name":"mumps","type":"exact"},{"name":"mumps virus infectious disease","type":"related"}],"termid":"MONDO:0000989","xrefs":{"Monarch":{"xref_id":"0000989"}}}


id: GO:1904791
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of shelterin complex assembly.","definition_xrefs":["GOC:BHF_telomere","GOC:BHF","GOC:nc","PMID:24270157","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex assembly","termid":"GO:0031333"},{"relation_name":"is_a","term_name":"regulation of shelterin complex assembly","termid":"GO:1904790"},{"relation_name":"negatively_regulates","term_name":"shelterin complex assembly","termid":"GO:0071573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"negatively_regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of shelterin complex assembly","synonyms":[{"name":"down regulation of Pot1 complex assembly","type":"exact"},{"name":"down regulation of Pot1-Tpz1 complex assembly","type":"exact"},{"name":"down regulation of shelterin complex formation","type":"exact"},{"name":"down regulation of telosome assembly","type":"exact"},{"name":"down-regulation of Pot1 complex assembly","type":"exact"},{"name":"down-regulation of Pot1-Tpz1 complex assembly","type":"exact"},{"name":"down-regulation of shelterin complex formation","type":"exact"},{"name":"down-regulation of telosome assembly","type":"exact"},{"name":"downregulation of Pot1 complex assembly","type":"exact"},{"name":"downregulation of Pot1-Tpz1 complex assembly","type":"exact"},{"name":"downregulation of shelterin complex formation","type":"exact"},{"name":"downregulation of telosome assembly","type":"exact"},{"name":"inhibition of Pot1 complex assembly","type":"narrow"},{"name":"inhibition of Pot1-Tpz1 complex assembly","type":"narrow"},{"name":"inhibition of shelterin complex formation","type":"narrow"},{"name":"inhibition of telosome assembly","type":"narrow"},{"name":"negative regulation of Pot1 complex assembly","type":"exact"},{"name":"negative regulation of Pot1-Tpz1 complex assembly","type":"exact"},{"name":"negative regulation of shelterin complex formation","type":"exact"},{"name":"negative regulation of telosome assembly","type":"exact"}],"termid":"GO:1904791"}


id: MONDO:1010826
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Syndactyly that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndactyly, non-human animal","termid":"MONDO:1010160"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndactyly, domestic cat","secondary_identifiers":["OMIA:000963-9685"],"termid":"MONDO:1010826","xrefs":{"Monarch":{"xref_id":"1010826"}}}


id: GO:0039559
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of host IRF7 (interferon regulatory factor-7) by promoting the ubiquitin-dependent degradation of IRF7, mediated by the proteasome.","definition_xrefs":["VZ:653","PMID:17301153"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host IRF7 activity by positive regulation of IRF7 catabolic process (obsolete GO:0039559)","synonyms":[{"name":"promotion by virus of proteosome-dependent IRF7 degradation","type":"exact"}],"termid":"GO:0039559"}


id: PBO:0078538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 31","termid":"PBO:0078538"}


id: PBO:0035940
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_methyltransferase_activity","termid":"PBO:0035940"}


id: PBO:0046586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 28","termid":"PBO:0046586"}


id: MONDO:0022578
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare carcinoma of the bladder that occurs during childhood.","definition_xrefs":["NCIT:C118816"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urinary bladder carcinoma","termid":"MONDO:0004986"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"childhood bladder carcinoma","secondary_identifiers":["UMLS:C3899675","MEDGEN:859269"],"synonyms":[{"name":"bladder cancer","type":"broad"},{"name":"bladder cancer childhood","type":"related"},{"name":"bladder cancer, childhood","type":"related"},{"name":"bladder carcinoma, childhood","type":"related"},{"name":"childhood bladder cancer","type":"exact"},{"name":"childhood bladder carcinoma","type":"exact"}],"termid":"MONDO:0022578","xrefs":{"Monarch":{"xref_id":"0022578"}}}


id: GO:0018755
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-chloro-4-hydroxy-6-amino-1,3,5-triazine + OH- = 2,4-dihydroxy-6-amino-1,3,5-triazine + Cl-.","definition_xrefs":["UM-BBD_reactionID:r1414"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016810"],"is_obsolete":false,"name":"2-chloro-4-hydroxy-6-amino-1,3,5-triazine aminohydrolase activity","termid":"GO:0018755"}


id: PBO:0076574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 3 pseudogene 2","termid":"PBO:0076574"}


id: PBO:0046734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EWS RNA binding protein 1","termid":"PBO:0046734"}


id: PBO:0055611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3050","termid":"PBO:0055611"}


id: MONDO:0010772
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Leber hereditary optic neuropathy","termid":"MONDO:0010788"},{"relation_name":"is_a","term_name":"Leber plus disease","termid":"MONDO:0020478"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005267","MONDO:0004069","MONDO:0005066","MONDO:0005559"],"is_obsolete":false,"name":"Leber optic atrophy and dystonia","secondary_identifiers":["GARD:15311","DOID:0111755","MEDGEN:333240","UMLS:C1839040","MESH:C536024","OMIM:500001"],"synonyms":[{"name":"LDYT","type":"related"},{"name":"LHON and dystonia","type":"related"},{"name":"Leber Hereditary optic neuropathy with dystonia","type":"related"},{"name":"Leber hereditary optic neuropathy with dystonia","type":"related"},{"name":"Leber optic atrophy and dystonia","type":"exact"},{"name":"Leber's hereditary optic neuropathy with dystonia","type":"related"},{"name":"Marsden syndrome","type":"related"},{"name":"dystonia familial, with visual failure and striatal lucencies","type":"related"},{"name":"dystonia, familial, with visual failure and striatal lucencies","type":"related"}],"termid":"MONDO:0010772","xrefs":{"Monarch":{"xref_id":"0010772"}}}


id: GO:0120084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly of a filopodium, a thin, stiff protrusion extended by the endothelial tip cell of a vascular sprout.","definition_xrefs":["PMID:28264837","GOC:cvs"],"direct_ancestors":[{"relation_name":"is_a","term_name":"filopodium assembly","termid":"GO:0046847"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"endothelial tip cell filopodium assembly","termid":"GO:0120084"}


id: PBO:0055916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 37 member A4, pseudogene","termid":"PBO:0055916"}


id: MONDO:0012228
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myopia","termid":"MONDO:0001384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"myopia 8","secondary_identifiers":["MESH:C563760","MEDGEN:332223","OMIM:609257","UMLS:C1836505"],"synonyms":[{"name":"MYP8","type":"exact"},{"name":"myopia 8","type":"exact"}],"termid":"MONDO:0012228","xrefs":{"Monarch":{"xref_id":"0012228"}}}


id: MONDO:0100150
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder of the musculoskeletal system caused by pathogenic variants in the RYR1 gene, which encodes the ryanodine receptor type 1 protein. These variants are associated with a variety of overlapping features characterized by symmetric proximal muscle weakness, often with pronounced facial weakness with or without dysmorphism and ophthalmoparesis/ophthalmoplegia with ptosis, bulbar weakness, significant respiratory involvement, severe neonatal hypotonia, scoliosis, orthopedic deformities including arthrogryposis, hip dislocation, club feet, and King Denborough syndrome (pectus carinatum or excavatum, short stature, joint contractures, facial and skeletal deformities), malignant hyperthermia susceptibility, anesthesia-induced rhabdomyolysis, fatigue, exercise-induced hyperthermia/exertional heat stroke, and exertional myalgia. Histologic findings on skeletal muscle biopsy reveal a wide range of structural abnormalities and can include central core disease, multiminicore disease, cone-rod myopathy, centronuclear myopathy, and congenital fiber-type disproportion.","definition_xrefs":["PMID:30406384"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital myopathy","termid":"MONDO:0019952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"RYR1-related myopathy","synonyms":[{"name":"RYR1-related disease","type":"broad"},{"name":"RYR1-related disorder","type":"broad"},{"name":"RYR1-related myopathy","type":"exact"}],"termid":"MONDO:0100150","xrefs":{"Monarch":{"xref_id":"0100150"}}}


id: PBO:0063763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyhomeotic homolog 3","termid":"PBO:0063763"}


id: MONDO:1012761
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any muscular dystrophy that occurs in dogs due to a mutation in the COL6A1 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy, dog","termid":"MONDO:1010911"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"muscular dystrophy, COL6A1-related, dog","secondary_identifiers":["OMIA:001967-9615"],"synonyms":[{"name":"muscular dystrophy, Ullrich type, COL6A1-related, dog","type":"related"}],"termid":"MONDO:1012761","xrefs":{"Monarch":{"xref_id":"1012761"}}}


id: PBO:0017841
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S Phase Delayed","termid":"PBO:0017841"}


id: GO:0141032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change that impairs the structure or function of the host actin cytoskeleton by reorganizing the actin filaments, in a way that keeps the total filementous actin remains approximately constant. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:31130928","PMID:22212282"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host actin cytoskeleton","termid":"GO:0141027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host actin cytoskeleton via actin filament reorganization","synonyms":[{"name":"perturbation by symbiont of host actin cytoskeleton via actin filament rearrangement","type":"exact"},{"name":"perturbation by symbiont of host actin cytoskeleton via actin filament reorganization","type":"exact"}],"termid":"GO:0141032"}


id: PBO:0055913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 37A","termid":"PBO:0055913"}


id: PBO:0060007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4L pseudogene 27","termid":"PBO:0060007"}


id: PBO:0087765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p); TORC2 is a membrane-associated complex that regulates actin cytoskeletal dynamics during polarized growth and cell wall integrity; involved in sphingolipid metabolism; contains a RasGEFN domain","termid":"PBO:0087765"}


id: PBO:0077312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 50B","termid":"PBO:0077312"}


id: FYPO:0008159
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone phosphorylation at the silent mating-type locus does not occur. All histone phosphorylation may be affected, or phosphorylation of specific sites on specific histones may be abolished.","definition_xrefs":["PMID:16246721"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished histone phosphorylation during vegetative growth","termid":"FYPO:0002592"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0002274"],"is_obsolete":false,"name":"abolished histone H3-S10 phosphorylation at the silent mating-type locus during vegetative growth","termid":"FYPO:0008159"}


id: PBO:0054343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1736","termid":"PBO:0054343"}


id: PBO:0076367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trace amine associated receptor 4, pseudogene","termid":"PBO:0076367"}


id: MONDO:0003117
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A category of psychiatric disorders which are characterized by the presence of physical symptoms that suggest a medical condition but are not fully explained by any known medical reasons.","definition_xrefs":["NCIT:C34956"],"direct_ancestors":[{"relation_name":"is_a","term_name":"psychiatric disorder","termid":"MONDO:0002025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"somatoform disorder","secondary_identifiers":["UMLS:C0037650","DOID:4737","EFO:0009687","MEDGEN:20835","ICD9:300.81","ICD9:306.8","ICD9:300.8","MESH:D013001","SCTID:31297008"],"synonyms":[{"name":"physiological malfunction arising from mental factor","type":"related"},{"name":"psychophysiologic disorder","type":"related"},{"name":"psychosomatic disorder","type":"related"},{"name":"somatoform disorder","type":"exact"}],"termid":"MONDO:0003117","xrefs":{"Monarch":{"xref_id":"0003117"}}}


id: PBO:0013471
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"no apparent S. cerevisiaie ortholog","termid":"PBO:0013471"}


id: PBO:0029621
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_phosphorylation_during_cellular_response_to_hydroxyurea","termid":"PBO:0029621"}


id: GO:0099055
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of postsynaptic membrane (obsolete GO:0099055)","termid":"GO:0099055"}


id: GO:0034704
data:
  {"annotated_genes":["SJAG_05229"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[76192],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005891"}]},"cv_name":"cellular_component","definition":"An ion channel complex through which calcium ions pass.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cation channel complex","termid":"GO:0034703"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05229":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"calcium channel complex","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0034704","terms_by_termid":{"GO:0005891":null}}


id: PBO:0075507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPC25 component of NDC80 kinetochore complex","termid":"PBO:0075507"}


id: PBO:0000478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome segregation protein (predicted)","termid":"PBO:0000478"}


id: MONDO:0004746
data:
  {"annotated_genes":["SJAG_04003","SJAG_04601"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88561],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010912"},{"annotations":[87404],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0958176"}]},"cv_name":"mondo","definition":"A myopathy that involves the extra-ocular muscle.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye adnexa disorder","termid":"MONDO:0000462"},{"relation_name":"is_a","term_name":"myopathy","termid":"MONDO:0005336"},{"relation_name":"is_a","term_name":"disorder of visual system","termid":"MONDO:0024458"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04003":null,"SJAG_04601":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"myopathy of extraocular muscle","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:929","UMLS:C0155286","MEDGEN:509895","ICD9:376.82","SCTID:57130002","ICD10CM:H05.82"],"synonyms":[{"name":"extra-ocular muscle myopathy","type":"exact"},{"name":"myopathy of extra-ocular muscle","type":"exact"},{"name":"myopathy of extraocular muscles","type":"exact"}],"termid":"MONDO:0004746","terms_by_termid":{"MONDO:0010912":null,"MONDO:0958176":null},"xrefs":{"Monarch":{"xref_id":"0004746"}}}


id: MOD:00822
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-leucine residue and an L-cysteine residue by a thioester bond to form S-(L-leucyl)-L-cysteine.","definition_xrefs":["RESID:AA0412","PubMed:12591958"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thioester crosslinked residues","termid":"MOD:00395"},{"relation_name":"is_a","term_name":"crosslinked residues with loss of water","termid":"MOD:00954"},{"relation_name":"is_a","term_name":"crosslinked L-leucine residue","termid":"MOD:02050"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"S-(L-leucyl)-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-([(2S)-2-amino-4-methylpentanoyl]sulfanyl)propanoic acid","type":"exact"},{"name":"CROSSLNK Leucyl cysteine thioester (Cys-Leu)","type":"exact"},{"name":"S-(2-amino-4-methylpentanoyl)cysteine","type":"exact"},{"name":"S-(L-leucyl)-L-cysteine","type":"exact"},{"name":"XLNK1LeuSCys","type":"exact"},{"name":"leucine cysteine thioester","type":"exact"}],"termid":"MOD:00822"}


id: MONDO:0018861
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An extremely rare mitochondrial disorder characterized by facial dysmorphism similar to that seen in Zellweger syndrome, such as frontal bossing, high forehead, upslanting palpebral fissures, hypoplastic supraorbital ridges, and epicanthal folds, and in addition, pale skin, profound hypotonia, developmental delay, and minor metabolic anomalies. No peroxysomal defects, however, have been reported. Transmission is thought to be autosomal recessive.","definition_xrefs":["Orphanet:50812"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial oxidative phosphorylation disorder","termid":"MONDO:0016387"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"Zellweger-like syndrome without peroxisomal anomalies","secondary_identifiers":["SCTID:718880003","GARD:18841","icd11.foundation:697302760","UMLS:C4305104","MEDGEN:930773"],"synonyms":[{"name":"AHN-Lerman-Sagie syndrome","type":"exact"}],"termid":"MONDO:0018861","xrefs":{"Monarch":{"xref_id":"0018861"}}}


id: GO:0044716
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction 8-oxo-GDP + H2O = 8-oxo-GMP + phosphate.","definition_xrefs":["GOC:pde","PMID:22556419","RHEA:62356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside diphosphate phosphatase activity","termid":"GO:0017110"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"8-oxo-GDP phosphatase activity","secondary_identifiers":["Reactome:R-HSA-2395873"],"termid":"GO:0044716"}


id: PBO:0052398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KRT19 interacting long noncoding RNA in hepatocellular carcinoma","termid":"PBO:0052398"}


id: MONDO:1012472
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"horn cancer, non-human animal","termid":"MONDO:1011824"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"horn cancer, zebu cattle","secondary_identifiers":["OMIA:001859-9915"],"termid":"MONDO:1012472","xrefs":{"Monarch":{"xref_id":"1012472"}}}


id: PBO:0081944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNRD2 divergent transcript","termid":"PBO:0081944"}


id: PBO:0041666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDK2 associated cullin domain 1","termid":"PBO:0041666"}


id: PBO:0090407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial rhomboid family protease","termid":"PBO:0090407"}


id: PBO:0086420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative GTPase involved in 60S ribosomal subunit biogenesis; required for the release of Nmd3p from 60S subunits in the cytoplasm","termid":"PBO:0086420"}


id: PBO:0072378
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 4","termid":"PBO:0072378"}


id: PBO:0071445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 51","termid":"PBO:0071445"}


id: PBO:0081350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 165","termid":"PBO:0081350"}


id: GO:0106261
data:
  {"annotated_genes":["SJAG_04756"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97284],"is_not":false,"summary":null,"term":"GO:0106261"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + H2O + S-adenosyl-L-methionine + uridine(34) in tRNA = 5'-deoxyadenosine + carboxymethyluridine(34) in tRNA + CoA + 2 H+ + L-methionine.","definition_xrefs":["PMID:25151136","PMID:30733442","RHEA:61020"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetyltransferase activity","termid":"GO:0016407"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04756":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0003824","GO:0016740","GO:0140098","GO:0140101"],"is_obsolete":false,"name":"tRNA uridine(34) acetyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:2.3.1.311"],"termid":"GO:0106261","terms_by_termid":{"GO:0106261":null}}


id: PBO:0073446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SFR1 pseudogene 2","termid":"PBO:0073446"}


id: GO:0010330
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A large, multimeric protein complex, organized in a rosette, which catalyzes the biosynthesis of cellulose for the plant cell wall.","definition_xrefs":["PMID:12514238","PMID:21307367","PMID:18485800"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"cellulose synthase complex","synonyms":[{"name":"CESA complex","type":"exact"}],"termid":"GO:0010330"}


id: GO:0046722
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled release of lactic acid, 2-hydroxypropanoic acid, by a cell or a tissue.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane lactate transport","termid":"GO:0035879"},{"relation_name":"is_a","term_name":"acid secretion","termid":"GO:0046717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"lactic acid secretion","synonyms":[{"name":"lactate secretion","type":"exact"}],"termid":"GO:0046722"}


id: GO:0160087
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of removing the majority of the cytoplasm and organelles from a spermatid as it develops into a mature flagellated sperm cell.","definition_xrefs":["PMID:21866274","PMID:23087837"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"part_of","term_name":"spermatogenesis","termid":"GO:0007283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spermatid cytoplasm removal during spermiation of flagellated sperm","termid":"GO:0160087"}


id: GO:0051693
data:
  {"annotated_genes":["SJAG_00279","SJAG_02700","SJAG_01993","SJAG_01894"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94137,81936,77285,80885],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051016"}]},"cv_name":"biological_process","definition":"The binding of a protein or protein complex to the end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits.","definition_xrefs":["ISBN:071673706X"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of actin filament depolymerization","termid":"GO:0030835"},{"relation_name":"is_a","term_name":"negative regulation of actin filament polymerization","termid":"GO:0030837"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_01894":null,"SJAG_01993":null,"SJAG_02700":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"negatively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"negatively_regulates","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0065003","GO:0007010","GO:0008150","GO:0030036","GO:0044085"],"is_obsolete":false,"name":"actin filament capping","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"F-actin capping activity","type":"related"},{"name":"actin capping activity","type":"related"}],"termid":"GO:0051693","terms_by_termid":{"GO:0051016":null}}


id: PBO:0109282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTX2 pseudogene 1","termid":"PBO:0109282"}


id: PBO:0061645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUDT19 pseudogene 3","termid":"PBO:0061645"}


id: MOD:00815
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because redundant with MOD:00151. Remap to MOD:00151.","definition_xrefs":["PubMed:9428520","PubMed:14527393","PubMed:7878465"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00815 molybdopterin (obsolete MOD:00815)","termid":"MOD:00815"}


id: PATO:0002520
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer being shaped like a scute or an osteoderm.","definition_xrefs":["PATOC:EJS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scute-like","termid":"PATO:0002520"}


id: GO:0010197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The merging of the polar nuclei, the two nuclei contained within the same cell that are created from the mitotic division of the megaspore during angiosperm reproduction. Polar nuclear fusion takes place in the ovule, forming in the fusion nucleus and giving rise to the endosperm when fertilized.","definition_xrefs":["GOC:mtg_plant","GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"karyogamy","termid":"GO:0000741"},{"relation_name":"part_of","term_name":"embryo sac central cell differentiation","termid":"GO:0009559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"polar nucleus fusion","termid":"GO:0010197"}


id: GO:0050084
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-mannitol 1-phosphate + H2O = D-mannitol + 2 H+ + phosphate.","definition_xrefs":["EC:3.1.3.22","RHEA:19537"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016788"],"is_obsolete":false,"name":"mannitol-1-phosphatase activity","secondary_identifiers":["MetaCyc:MANNITOL-1-PHOSPHATASE-RXN","KEGG_REACTION:R02167"],"synonyms":[{"name":"D-mannitol-1-phosphate phosphohydrolase activity","type":"related"},{"name":"mannitol-1-phosphate phosphatase activity","type":"related"}],"termid":"GO:0050084"}


id: PATO:0001321
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An angle which is 90 degrees to another entity.","definition_xrefs":["thesaurus.math:thesaurus.math"],"direct_ancestors":[{"relation_name":"is_a","term_name":"angle","termid":"PATO:0002326"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"right angle to","termid":"PATO:0001321"}


id: GO:0018742
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of the ether in chloro- or hydroxyepoxypropane to produce chloropropane diol or glycerol. Acts on R enantiomers.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete epoxide hydrolase B activity (obsolete GO:0018742)","termid":"GO:0018742"}


id: PR:Q09871
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC12G12.07c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09871"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C12G12.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12G12.07c","synonyms":[{"name":"Spom972h-SPAC12G12.07c","type":"exact"}],"termid":"PR:Q09871"}


id: MONDO:0009909
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"progesterone resistance","secondary_identifiers":["OMIM:264080","MEDGEN:337889","MESH:C564871","UMLS:C1849699"],"synonyms":[{"name":"progesterone resistance","type":"exact"},{"name":"pseudocorpus luteum insufficiency","type":"related"}],"termid":"MONDO:0009909","xrefs":{"Monarch":{"xref_id":"0009909"}}}


id: FYPO:0004807
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which the cell is narrower than normal at the point where cell fusion occurred during mating. Normally, the cell expands at the fusion site after fusion takes place.","definition_xrefs":["PMID:25825517","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell shape","termid":"FYPO:0001126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"narrow cell fusion site following mating","synonyms":[{"name":"narrow cell fusion site following conjugation","type":"exact"},{"name":"narrow cell fusion site following conjugation with cellular fusion","type":"exact"},{"name":"narrow cell-cell fusion site following conjugation with cellular fusion","type":"exact"}],"termid":"FYPO:0004807"}


id: PBO:0002035
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unmerged","termid":"PBO:0002035"}


id: GO:1900598
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of demethylkotanin.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"},{"relation_name":"is_a","term_name":"demethylkotanin metabolic process","termid":"GO:1900597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"demethylkotanin catabolic process","synonyms":[{"name":"demethylkotanin breakdown","type":"exact"},{"name":"demethylkotanin catabolism","type":"exact"},{"name":"demethylkotanin degradation","type":"exact"}],"termid":"GO:1900598"}


id: PBO:0002472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl-diphospho-oligosaccharide-protein glycosyltransferase Ost1 (predicted)","termid":"PBO:0002472"}


id: PBO:0077549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 256 pseudogene 2","termid":"PBO:0077549"}


id: PBO:0076125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine/tyrosine kinase 1","termid":"PBO:0076125"}


id: PBO:0083917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Formin inhibitor; negatively regulates Bnr1-mediated actin filament nucleation but not filament elongation; performs distinct but overlapping roles with Hof1p to control actin cable assembly and polarized secretion; bnr1 bil2 double mutants are inviable; localizes to the cytosol, secretory vesicles and sites of polarized growth","termid":"PBO:0083917"}


id: GO:0098767
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. M phase during meiosis II.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete meiosis II M phase (obsolete GO:0098767)","termid":"GO:0098767"}


id: PBO:0088482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S24","termid":"PBO:0088482"}


id: PBO:0068884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 125, pseudogene","termid":"PBO:0068884"}


id: GO:0000449
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Endonucleolytic cleavage of a pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, the Large Subunit (LSU) rRNA, and the 5S rRNA, in that order, from 5' to 3' along the primary transcript. For example, primary ribosomal RNA transcripts containing three genes, in this order, are produced in E. coli and other prokaryotic species. Note that the use of the word tricistronic refers only to the number of mature rRNA molecules which will be produced from the primary transcript and ignores tRNAs that may also be present within the primary transcript.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA processing","termid":"GO:0006364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0042254","GO:0044085","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 5S)","termid":"GO:0000449"}


id: GO:0018474
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-formylbenzoate + H2O + NAD+ = 2 H+ + NADH + phthalate.","definition_xrefs":["RHEA:27298"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde dehydrogenase (NAD+) activity","termid":"GO:0004029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2-formylbenzoate dehydrogenase (NAD+) activity","secondary_identifiers":["UM-BBD_reactionID:r0490","EC:1.2.1.78"],"synonyms":[{"name":"2-carboxybenzaldehyde dehydrogenase activity","type":"exact"}],"termid":"GO:0018474"}


id: GO:0008455
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R.","definition_xrefs":["EC:2.4.1.143"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a glycoprotein","termid":"GO:0140103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0140096","GO:0003674","GO:0016740","GO:0016757","GO:0003824"],"is_obsolete":false,"name":"alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity","secondary_identifiers":["Reactome:R-HSA-9694656","MetaCyc:2.4.1.143-RXN","Reactome:R-HSA-4793955","Reactome:R-HSA-975829","RHEA:12941"],"synonyms":[{"name":"GnTII activity","type":"related"},{"name":"N-acetylglucosaminyltransferase II activity","type":"related"},{"name":"N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase II activity","type":"related"},{"name":"UDP-GlcNAc:mannoside alpha-(1,6) acetylglucosaminyltransferase activity","type":"related"},{"name":"UDP-GlcNAc:mannoside alpha-1,6 acetylglucosaminyltransferase activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:6-(alpha-D-mannosyl)-beta-D-mannosyl-glycoprotein 2-beta-N-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"acetylglucosaminyltransferase II activity","type":"related"},{"name":"alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"alpha-1,6-mannosylglycoprotein beta-1,2-N-acetylglucosaminyltransferase activity","type":"exact"},{"name":"uridine diphosphoacetylglucosamine-alpha-1,6-mannosylglycoprotein beta-1,2-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-alpha-D-mannoside beta(1,2)-acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-alpha-D-mannoside beta-1,2-acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-mannoside alpha(1,6)-acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-mannoside alpha-1,6-acetylglucosaminyltransferase activity","type":"related"}],"termid":"GO:0008455"}


id: PR:O94559
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC23C4.05c gene.","definition_xrefs":["UniProtKB:O94559","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C23C4.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23C4.05c","synonyms":[{"name":"Spom972h-SPAC23C4.05c","type":"exact"}],"termid":"PR:O94559"}


id: PBO:0044604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDB1 and CUL4 associated factor 10","termid":"PBO:0044604"}


id: PBO:0081498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 396","termid":"PBO:0081498"}


id: PBO:0075861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSX family member 9, pseudogene","termid":"PBO:0075861"}


id: MOD:00778
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Natural or modified residues with a mass of 182.9-183.0 Da.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"residues isobaric at a resolution below 0.1 Da","termid":"MOD:00616"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"residues isobaric at 182.9-183.0 Da","termid":"MOD:00778"}


id: MONDO:0015941
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Epiphyseal dysplasia-hearing loss-dysmorphism syndrome is a rare multiple congenital anomalies/dysmorphic syndrome characterized by developmental delay, intellectual disability, short stature, sensorineural hearing impairment, facial dysmorphism (incl. epicanthus, broad, depressed nasal bridge, broad, fleshy nasal tip, mildly anteverted nares, deep nasolabial folds, broad mouth with thin upper lip) and skeletal anomalies (incl. abnormally placed thumbs, brachydactyly, scoliosis, dysplastic carpal bones). Patients also present severe behavior disturbances (aggression, hyperactivity), as well as hypopigmented skin lesions and hypoplastic digital patterns. There have been no further descriptions in the literature since 1992.","definition_xrefs":["Orphanet:1825"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epiphyseal dysplasia-hearing loss-dysmorphism syndrome","secondary_identifiers":["MEDGEN:1643947","GARD:2178","SCTID:766870005","UMLS:C4707857"],"synonyms":[{"name":"Finucane Kurtz Scott syndrome","type":"related"},{"name":"Finucane-Kurtz-Scott syndrome","type":"exact"},{"name":"epiphyseal dysplasia hearing loss dysmorphism","type":"related"}],"termid":"MONDO:0015941","xrefs":{"Monarch":{"xref_id":"0015941"}}}


id: PBO:0076363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SZT2 antisense RNA 1","termid":"PBO:0076363"}


id: PBO:0044835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 123","termid":"PBO:0044835"}


id: PBO:0066496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ret finger protein like 4A pseudogene 7","termid":"PBO:0066496"}


id: PBO:0073744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 2 member 3","termid":"PBO:0073744"}


id: PBO:0061585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"netrin 5","termid":"PBO:0061585"}


id: GO:0039556
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to MDA-5, a cytoplasmic pattern recognition receptor that initiates an antiviral signaling pathway upon binding to viral dsRNA.","definition_xrefs":["PMID:19019954"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"MDA-5 binding","synonyms":[{"name":"MDA5 binding","type":"exact"}],"termid":"GO:0039556"}


id: MONDO:0003348
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An uncommon, aggressive malignant smooth muscle neoplasm. It is characterized by the presence of atypical large spindle or round cells, nuclear palisading, tumor cell necrosis, mitotic figures and may be associated with vascular invasion.","definition_xrefs":["NCIT:C9428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leiomyosarcoma","termid":"MONDO:0005058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"conventional leiomyosarcoma","secondary_identifiers":["DOID:5253","UMLS:C1333157","MEDGEN:232394"],"synonyms":[{"name":"classic leiomyosarcoma","type":"exact"},{"name":"conventional leiomyosarcoma","type":"exact"}],"termid":"MONDO:0003348","xrefs":{"Monarch":{"xref_id":"0003348"}}}


id: PBO:0049664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase","termid":"PBO:0049664"}


id: FYPO:0006272
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the initiation of nuclear DNA replication begins earlier than normal at origins that normally fire late.","definition_xrefs":["PMID:26804021","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"premature mitotic DNA replication initiation","termid":"FYPO:0003498"},{"relation_name":"output_of","term_name":"abnormal regulation of mitotic DNA replication initiation from late origin","termid":"FYPO:0005758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000293","FYPO:0000631","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"premature mitotic DNA replication initiation from late origin","synonyms":[{"name":"advanced mitotic DNA replication initiation from late origin","type":"exact"},{"name":"premature DNA replication initiation from late origin during mitotic cell cycle","type":"exact"},{"name":"premature DNA replication initiation from late origin during vegetative growth","type":"exact"},{"name":"premature mitotic DNA replication initiation at late origin","type":"exact"},{"name":"premature mitotic DNA replication initiation from late replication origin","type":"exact"}],"termid":"FYPO:0006272"}


id: GO:0140928
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of non-mineral tissue, by preventing mineralization of non-skeletal tissue.","definition_xrefs":["PMID:30030150","PMID:21490328"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue homeostasis","termid":"GO:0001894"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inhibition of non-skeletal tissue mineralization","synonyms":[{"name":"inhibition of ectopic tissue mineralization","type":"narrow"}],"termid":"GO:0140928"}


id: FYPO:0006546
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A localization phenotype observed in the vegetative growth phase of the life cycle in which the distribution of one or more lipids in a cellular membrane is normal (i.e. indistinguishable from wild type).","definition_xrefs":["GO:0097035","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"regulation phenotype during vegetative growth","termid":"FYPO:0001334"},{"relation_name":"is_a","term_name":"localization phenotype during vegetative growth","termid":"FYPO:0001337"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000138","FYPO:0001320","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal membrane lipid distribution","synonyms":[{"name":"normal membrane lipid distribution during mitotic cell cycle","type":"related"},{"name":"normal membrane lipid distribution during vegetative growth","type":"exact"},{"name":"normal regulation of membrane lipid distribution","type":"exact"}],"termid":"FYPO:0006546"}


id: PBO:0001057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"curved DNA-binding protein Cdb4, peptidase family","termid":"PBO:0001057"}


id: PBO:0078858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRPC6 pseudogene 6","termid":"PBO:0078858"}


id: FYPO:0002478
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is viable and is curved along the long axis, and in which vacuoles are more visible (usually by microscopy) than normal. In a curved cell, the long axis follows a smooth bend rather than a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"vacuolated","termid":"FYPO:0001581"},{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"is_a","term_name":"viable curved vegetative cell","termid":"FYPO:0002112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000004","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"viable curved vacuolated vegetative cell","synonyms":[{"name":"curved vacuolated viable cell","type":"exact"},{"name":"viable curved vacuolated cell during vegetative growth","type":"exact"},{"name":"viable curved vacuolated vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002478"}


id: PBO:0017020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"box H/ACA small nucleolar RNA snR5","termid":"PBO:0017020"}


id: MONDO:0010470
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Baratela-Scott syndrome (obsolete MONDO:0010470)","secondary_identifiers":["OMIM:300881"],"termid":"MONDO:0010470","xrefs":{"Monarch":{"xref_id":"0010470"}}}


id: GO:0060349
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which bones are generated and organized.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ morphogenesis","termid":"GO:0009887"},{"relation_name":"part_of","term_name":"skeletal system morphogenesis","termid":"GO:0048705"},{"relation_name":"part_of","term_name":"bone development","termid":"GO:0060348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bone morphogenesis","termid":"GO:0060349"}


id: GO:0140861
data:
  {"annotated_genes":["SJAG_03628","SJAG_02439","SJAG_02198","SJAG_01611","SJAG_03792","SJAG_04989","SJAG_03145","SJAG_02303","SJAG_02698","SJAG_04272","SJAG_00783","SJAG_00045","SJAG_00349","SJAG_02701","SJAG_01385","SJAG_00187","SJAG_04039","SJAG_04097","SJAG_04190","SJAG_02990","SJAG_04613","SJAG_03230","SJAG_04793","SJAG_05282","SJAG_03579","SJAG_02500"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74153,75537,90686,92505,94185,94605,96115,96419,96643,96884,99031,100717,100776,100951,101203,101490,105855,106042,106545,108709,109562,110906,115004,116574,117460,120443],"is_not":false,"summary":null,"term":"GO:0140861"}]},"cv_name":"biological_process","definition":"A chromatin remodeling process that allows DNA repair enzyme to access genomic DNA and repair DNA lesions.","definition_xrefs":["PMID:29095668","PMID:28053344","PMID:35689883","PMID:15528408"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin remodeling","termid":"GO:0006338"},{"relation_name":"part_of","term_name":"DNA damage response","termid":"GO:0006974"}],"gene_count":26,"genes_by_uniquename":{"SJAG_00045":null,"SJAG_00187":null,"SJAG_00349":null,"SJAG_00783":null,"SJAG_01385":null,"SJAG_01611":null,"SJAG_02198":null,"SJAG_02303":null,"SJAG_02439":null,"SJAG_02500":null,"SJAG_02698":null,"SJAG_02701":null,"SJAG_02990":null,"SJAG_03145":null,"SJAG_03230":null,"SJAG_03579":null,"SJAG_03628":null,"SJAG_03792":null,"SJAG_04039":null,"SJAG_04097":null,"SJAG_04190":null,"SJAG_04272":null,"SJAG_04613":null,"SJAG_04793":null,"SJAG_04989":null,"SJAG_05282":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006325"],"is_obsolete":false,"name":"DNA repair-dependent chromatin remodeling","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"DNA damage-dependent chromatin remodelling","type":"exact"}],"termid":"GO:0140861","terms_by_termid":{"GO:0140861":null}}


id: MONDO:0000318
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete wound botulism (obsolete MONDO:0000318)","termid":"MONDO:0000318","xrefs":{"Monarch":{"xref_id":"0000318"}}}


id: GO:1902066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell wall pectin metabolic process.","definition_xrefs":["PMID:23453954","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of polysaccharide metabolic process","termid":"GO:0032881"},{"relation_name":"regulates","term_name":"cell wall pectin metabolic process","termid":"GO:0052546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"regulation of cell wall pectin metabolic process","synonyms":[{"name":"regulation of cell wall pectin metabolism","type":"exact"},{"name":"regulation of cellulose and pectin-containing cell wall pectin metabolic process","type":"exact"},{"name":"regulation of pectin metabolism during cell wall biogenesis","type":"exact"},{"name":"regulation of plant-type cell wall pectin metabolic process","type":"exact"}],"termid":"GO:1902066"}


id: GO:0032025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalt ion (Co2+) stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to metal ion","termid":"GO:0010038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cobalt ion","termid":"GO:0032025"}


id: PBO:0051922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit beta 5","termid":"PBO:0051922"}


id: PBO:0077575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane inner ear","termid":"PBO:0077575"}


id: PBO:0047574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor binding protein 2","termid":"PBO:0047574"}


id: PBO:0082290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Arginine/alanine amino peptidase; overproduction stimulates glycogen accumulation; AAP1 has a paralog, APE2, that arose from the whole genome duplication","termid":"PBO:0082290"}


id: PBO:0071249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 90","termid":"PBO:0071249"}


id: GO:0072230
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephric proximal straight tubule over time, from its formation to the mature structure. The metanephric proximal straight tubule is the part of the metanephric descending limb that extends from the metanephric proximal convoluted tubule to the metanephric descending thin tubule.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proximal straight tubule development","termid":"GO:0072020"},{"relation_name":"is_a","term_name":"metanephric nephron tubule development","termid":"GO:0072234"},{"relation_name":"part_of","term_name":"metanephric proximal tubule development","termid":"GO:0072237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric proximal straight tubule development","synonyms":[{"name":"metanephric S3 development","type":"exact"}],"termid":"GO:0072230"}


id: GO:0102999
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: UDP-alpha-D-glucose + 2-hydroxylamino-4,6-dinitrotoluene = 2-hydroxylamino-4,6-dinitrotoluene-O-glucoside + UDP + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete UDP-glucose:2-hydroxylamino-4,6-dinitrotoluene-O-glucosyltransferase activity (obsolete GO:0102999)","termid":"GO:0102999"}


id: MONDO:0017390
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Methylmalonic acidemia is an inborn error of vitamin B12 metabolism characterized by gastrointestinal and neurometabolic manifestations resulting from decreased function of the mitochondrial enzyme methylmalonyl-CoA mutase.","definition_xrefs":["Orphanet:293355"],"gene_count":0,"genotype_count":0,"name":"obsolete methylmalonic acidemia without homocystinuria (obsolete MONDO:0017390)","synonyms":[{"name":"methylmalonic acidemia without homocystinuria","type":"exact"},{"name":"methylmalonic aciduria without homocystinuria","type":"exact"}],"termid":"MONDO:0017390","xrefs":{"Monarch":{"xref_id":"0017390"}}}


id: _global:causally_upstream_of,_positive_effect
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q.","direct_ancestors":[{"relation_name":"is_a","term_name":"causally_upstream_of","termid":"_global:causally_upstream_of"},{"relation_name":"is_a","term_name":"causally_upstream_of_or_within,_positive_effect","termid":"_global:causally_upstream_of_or_within,_positive_effect"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"causally_upstream_of,_positive_effect","secondary_identifiers":["RO:0002304"],"termid":"_global:causally_upstream_of,_positive_effect"}


id: PBO:0067545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 691, pseudogene","termid":"PBO:0067545"}


id: PBO:0041284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C1q and TNF related 9","termid":"PBO:0041284"}


id: GO:1904567
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a wortmannin stimulus.","definition_xrefs":["PMID:20629186","GOC:TermGenie","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to ketone","termid":"GO:1901654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to wortmannin","synonyms":[{"name":"response to wartmannin","type":"exact"}],"termid":"GO:1904567"}


id: GO:0018811
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cyclohex-1-ene-1-carboxyl-CoA + H2O = 2-hydroxycyclohexane-1-carboxyl-CoA.","definition_xrefs":["MetaCyc:R266-RXN","UM-BBD_reactionID:r0191"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"cyclohex-1-ene-1-carboxyl-CoA hydratase activity","termid":"GO:0018811"}


id: PBO:0084484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meiosis specific DNA helicase; involved in the conversion of double-stranded breaks to later recombination intermediates and in crossover control; catalyzes the unwinding of Holliday junctions; has ssDNA and dsDNA stimulated ATPase activity","termid":"PBO:0084484"}


id: GO:1902583
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An intracellular transport which involves another organism.","definition_xrefs":["GO_REF:0000089","GOC:TermGenie","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism intracellular transport (obsolete GO:1902583)","synonyms":[{"name":"multi organism intracellular transport","type":"exact"}],"termid":"GO:1902583"}


id: FYPO:0004256
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a single cell is viable, and grows in the form of a lemon. A lemon shape is defined mathematically as having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"lemon-shaped cell","termid":"FYPO:0000224"},{"relation_name":"is_a","term_name":"lemon-shaped cell","termid":"FYPO:0000224"},{"relation_name":"is_a","term_name":"viable vegetative cell with abnormal cell shape","termid":"FYPO:0002197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0000004","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"viable lemon-shaped cell","synonyms":[{"name":"viable lemon-shaped cell during mitotic cell cycle","type":"related"},{"name":"viable lemon-shaped cell during vegetative growth","type":"exact"},{"name":"viable lemon-shaped vegetative cell","type":"exact"}],"termid":"FYPO:0004256"}


id: PBO:0084152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High affinity nicotinic acid plasma membrane permease; responsible for uptake of low levels of nicotinic acid; expression of the gene increases in the absence of extracellular nicotinic acid or para-aminobenzoate (PABA)","termid":"PBO:0084152"}


id: GO:0007254
data:
  {"annotated_genes":["SJAG_01718"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108106],"is_not":false,"summary":null,"term":"GO:0007254"}]},"cv_name":"biological_process","definition":"A MAPK cascade containing at least the JNK (MAPK8) MAP kinase. It starts with the activation of JUN3K (a MAPK3K), which activates JNKK a MAP2K), which in turn activates JNK. The cascade can also contain an additional tier: the upstream MAP4K. The kinases in each tier phosphorylate and activate the kinases in the downstream tier. The JNK cascade is activated by stress signals, as well as by G protein-coupled receptors, growth factors, and cytokines, and results in cellular responses such as cell proliferation, cell differentiation, apoptosis and inflammation.","definition_xrefs":["PMID:20811974","PMID:11790549","PMID:23125017"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MAPK cascade","termid":"GO:0000165"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01718":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"JNK cascade","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-450321"],"synonyms":[{"name":"JNK1 cascade","type":"narrow"},{"name":"JNK2 cascade","type":"narrow"},{"name":"JNK3 cascade","type":"narrow"},{"name":"MAPK10 cascade","type":"narrow"},{"name":"MAPK8 cascade","type":"exact"},{"name":"MAPK9 cascade","type":"narrow"},{"name":"SAPK cascade","type":"broad"},{"name":"c-Jun N-terminal kinase cascade","type":"exact"},{"name":"stress-activated protein kinase cascade","type":"broad"}],"termid":"GO:0007254","terms_by_termid":{"GO:0007254":null}}


id: GO:0060906
data:
  {"annotated_genes":["SJAG_04369"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110328],"is_not":false,"summary":null,"term":"GO:0060906"}]},"cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of non-coding RNA-mediated heterochromatin formation.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of regulatory ncRNA-mediated heterochromatin formation","termid":"GO:0010964"},{"relation_name":"is_a","term_name":"negative regulation of heterochromatin formation","termid":"GO:0031452"},{"relation_name":"is_a","term_name":"negative regulation of gene silencing by regulatory ncRNA","termid":"GO:0060967"},{"relation_name":"negatively_regulates","term_name":"regulatory ncRNA-mediated heterochromatin formation","termid":"GO:0031048"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04369":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006325","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of regulatory ncRNA-mediated heterochromatin formation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"negative regulation of RNAi-mediated heterochromatin assembly","type":"exact"},{"name":"negative regulation of chromatin silencing by small RNA","type":"related"},{"name":"negative regulation of heterochromatin assembly by small RNA","type":"narrow"},{"name":"negative regulation of ncRNA-mediated heterochromatin formation","type":"exact"},{"name":"negative regulation of small non-coding RNA-mediated heterochromatin formation","type":"narrow"}],"termid":"GO:0060906","terms_by_termid":{"GO:0060906":null}}


id: GO:0009482
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O.","definition_xrefs":["EC:1.9.3.1"],"gene_count":0,"genotype_count":0,"name":"obsolete ba3-type cytochrome c oxidase (obsolete GO:0009482)","synonyms":[{"name":"ba3-type cytochrome c oxidase","type":"exact"}],"termid":"GO:0009482"}


id: GO:1905111
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of pulmonary blood vessel remodeling.","definition_xrefs":["GO_REF:0000058","GOC:bc","GOC:BHF_miRNA","GOC:BHF","PMID:22161164","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pulmonary blood vessel remodeling","termid":"GO:1905109"},{"relation_name":"is_a","term_name":"positive regulation of blood vessel remodeling","termid":"GO:2000504"},{"relation_name":"positively_regulates","term_name":"pulmonary blood vessel remodeling","termid":"GO:0101010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of pulmonary blood vessel remodeling","synonyms":[{"name":"activation of pulmonary blood vessel remodeling","type":"narrow"},{"name":"positive regulation of pulmonary blood vessel remodelling","type":"exact"},{"name":"up regulation of pulmonary blood vessel remodeling","type":"exact"},{"name":"up-regulation of pulmonary blood vessel remodeling","type":"exact"},{"name":"upregulation of pulmonary blood vessel remodeling","type":"exact"}],"termid":"GO:1905111"}


id: GO:0000421
data:
  {"annotated_genes":["SJAG_06309","SJAG_02414"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72262,73820],"is_not":false,"summary":null,"term":"GO:0000421"}]},"cv_name":"cellular_component","definition":"The lipid bilayer surrounding an autophagosome, a double-membrane-bounded vesicle in which endogenous cellular material is sequestered.","definition_xrefs":["GOC:isa_complete","GOC:autophagy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuolar membrane","termid":"GO:0005774"},{"relation_name":"part_of","term_name":"autophagosome","termid":"GO:0005776"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02414":null,"SJAG_06309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005773"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005773"],"is_obsolete":false,"name":"autophagosome membrane","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"autophagic vacuole membrane","type":"exact"}],"termid":"GO:0000421","terms_by_termid":{"GO:0000421":null}}


id: GO:0018704
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 5-chloro-2-hydroxymuconic semialdehyde + H+ + 2 e- = Cl- + 2-hydroxymuconic semialdehyde.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 5-chloro-2-hydroxymuconic semialdehyde dehalogenase activity (obsolete GO:0018704)","synonyms":[{"name":"5-chloro-2-hydroxymuconic semialdehyde dehalogenase activity","type":"exact"}],"termid":"GO:0018704"}


id: PBO:0002687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pheromone p-factor receptor","termid":"PBO:0002687"}


id: PBO:0081816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 736 pseudogene 9, Y-linked","termid":"PBO:0081816"}


id: MONDO:0800429
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dyslexia, susceptibility to, 4","secondary_identifiers":["MEDGEN:338829","UMLS:C1851968"],"synonyms":[{"name":"DYX4","type":"exact"}],"termid":"MONDO:0800429","xrefs":{"Monarch":{"xref_id":"0800429"}}}


id: GO:0061629
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a sequence-specific DNA binding RNA polymerase II transcription factor, any of the factors that interact selectively and non-covalently with a specific DNA sequence in order to modulate transcription.","definition_xrefs":["GOC:vw","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-binding transcription factor binding","termid":"GO:0140297"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"RNA polymerase II-specific DNA-binding transcription factor binding","secondary_identifiers":["GO:0001103","GO:0001085","GO:0001102"],"synonyms":[{"name":"RNA polymerase II activating transcription factor binding","type":"related"},{"name":"RNA polymerase II repressing transcription factor binding","type":"related"},{"name":"RNA polymerase II sequence-specific DNA binding transcription factor binding","type":"exact"},{"name":"RNA polymerase II sequence-specific DNA-binding transcription factor binding","type":"exact"},{"name":"RNA polymerase II transcription factor binding","type":"related"}],"termid":"GO:0061629"}


id: MONDO:0000101
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete tumoral calcinosis (obsolete MONDO:0000101)","termid":"MONDO:0000101","xrefs":{"Monarch":{"xref_id":"0000101"}}}


id: RO:0002531
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of immediately downstream of","direct_ancestors":[{"relation_name":"is_a","term_name":"sequentially_adjacent_to","termid":"RO:0002515"},{"relation_name":"is_a","term_name":"is_upstream_of_sequence_of","termid":"RO:0002528"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_immediately_upstream_of_sequence_of","termid":"RO:0002531"}


id: GO:1905205
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of connective tissue replacement.","definition_xrefs":["GOC:bc","GOC:TermGenie","GOC:BHF","GO_REF:0000058","PMID:25590961","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of tissue remodeling","termid":"GO:0034105"},{"relation_name":"is_a","term_name":"regulation of connective tissue replacement","termid":"GO:1905203"},{"relation_name":"positively_regulates","term_name":"connective tissue replacement","termid":"GO:0097709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of connective tissue replacement","synonyms":[{"name":"activation of connective tissue replacement","type":"narrow"},{"name":"up regulation of connective tissue replacement","type":"exact"},{"name":"up-regulation of connective tissue replacement","type":"exact"},{"name":"upregulation of connective tissue replacement","type":"exact"}],"termid":"GO:1905205"}


id: PBO:0041488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C11orf98 pseudogene 3","termid":"PBO:0041488"}


id: GO:0061799
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate = cyclic pyranopterin phosphate + diphosphate.","definition_xrefs":["PMID:25896388","GOC:dph","GOC:ik"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorus-oxygen lyase activity","termid":"GO:0016849"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"cyclic pyranopterin monophosphate synthase activity","secondary_identifiers":["MetaCyc:RXN-17809","RHEA:49580","EC:4.6.1.17"],"termid":"GO:0061799"}


id: PBO:0027512
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_mitotic_spindle_midzone","termid":"PBO:0027512"}


id: _global:capable_of_negatively_regulating
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.","direct_ancestors":[{"relation_name":"is_a","term_name":"capable_of_regulating","termid":"_global:capable_of_regulating"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capable_of_negatively_regulating","secondary_identifiers":["RO:0002597"],"termid":"_global:capable_of_negatively_regulating"}


id: PBO:0062607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily R member 2","termid":"PBO:0062607"}


id: PBO:0116418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein, human WDR7 ortholog, implicated vacuolar acidification, autophagy, or vacuole localization","termid":"PBO:0116418"}


id: PATO:0000318
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color hue with low wavelength of that portion of the visible spectrum lying between green and indigo, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 490 nanometers.","definition_xrefs":["Dictionary:http://dictionary.reference.com/"],"direct_ancestors":[{"relation_name":"is_a","term_name":"color","termid":"PATO:0000014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"blue","termid":"PATO:0000318"}


id: PBO:0066841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 141","termid":"PBO:0066841"}


id: PBO:0058479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5586","termid":"PBO:0058479"}


id: GO:1904361
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of spore germination.","definition_xrefs":["GO_REF:0000058","PMID:14718564","PMID:8798577","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"regulation of spore germination","termid":"GO:1904359"},{"relation_name":"positively_regulates","term_name":"spore germination","termid":"GO:0009847"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of spore germination","secondary_identifiers":["GO:0075007"],"synonyms":[{"name":"activation of spore germination","type":"narrow"},{"name":"positive regulation of spore germination on or near host","type":"narrow"},{"name":"up regulation of spore germination","type":"exact"},{"name":"up-regulation of spore germination","type":"exact"},{"name":"upregulation of spore germination","type":"exact"}],"termid":"GO:1904361"}


id: MONDO:0020242
data:
  {"annotated_genes":["SJAG_01356","SJAG_02885","SJAG_04681"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88392],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012099"},{"annotations":[87890,87889],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010819"}]},"cv_name":"mondo","definition":"Macular dystrophy that is related to a change in a gene.","definition_xrefs":["NCIT:C140264"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01356":null,"SJAG_02885":null,"SJAG_04681":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"hereditary macular dystrophy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICD10CM:H35.5","UMLS:C0339508","NANDO:1200931","Orphanet:98664","MEDGEN:137919","SCTID:276436007"],"synonyms":[{"name":"genetic macular dystrophy","type":"exact"},{"name":"genetic macular dystrophy (disease)","type":"exact"}],"termid":"MONDO:0020242","terms_by_termid":{"MONDO:0010819":null,"MONDO:0012099":null},"xrefs":{"Monarch":{"xref_id":"0020242"}}}


id: PBO:0004236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"19S proteasome regulatory subunit Mts4","termid":"PBO:0004236"}


id: PBO:0066467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication factor C subunit 4","termid":"PBO:0066467"}


id: PBO:0012287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-60S shuttling factor (predicted)","termid":"PBO:0012287"}


id: GO:0032395
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with an MHC class II protein complex and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["ISBN:0781735149","GOC:add","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"},{"relation_name":"is_a","term_name":"immune receptor activity","termid":"GO:0140375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"MHC class II receptor activity","synonyms":[{"name":"T cell receptor activity","type":"related"},{"name":"alpha-beta T cell receptor activity","type":"related"},{"name":"gamma-delta T cell receptor activity","type":"related"}],"termid":"GO:0032395"}


id: PBO:0034149
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-child_nucleus_of","termid":"PBO:0034149"}


id: PBO:0043052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHP1 pseudogene 2","termid":"PBO:0043052"}


id: GO:0018619
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: benzene + H+ + NADH + O2 = cis-cyclohexa-3,5-diene-1,2-diol + NAD+.","definition_xrefs":["RHEA:13813","EC:1.14.12.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"benzene 1,2-dioxygenase activity","secondary_identifiers":["UM-BBD_reactionID:r0079","MetaCyc:BENZENE-12-DIOXYGENASE-RXN","KEGG_REACTION:R03543"],"synonyms":[{"name":"benzene dioxygenase activity","type":"related"},{"name":"benzene hydroxylase activity","type":"related"},{"name":"benzene,NADH:oxygen oxidoreductase (1,2-hydroxylating)","type":"related"}],"termid":"GO:0018619"}


id: PBO:0036543
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microcephalic primordial dwarfism","termid":"PBO:0036543"}


id: GO:0034586
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 21U-RNAs, a class of single-stranded RNA molecules of about 21 nucleotides in length characterized by a uridine 5'-monophosphate and a modified 3' end resistant to periodate degradation. 21U-RNAs are derived from distinct, autonomously expressed loci within the genome.","definition_xrefs":["GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA catabolic process","termid":"GO:0006401"},{"relation_name":"is_a","term_name":"21U-RNA metabolic process","termid":"GO:0034585"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"21U-RNA catabolic process","synonyms":[{"name":"21U-RNA breakdown","type":"exact"},{"name":"21U-RNA catabolism","type":"exact"},{"name":"21U-RNA degradation","type":"exact"}],"termid":"GO:0034586"}


id: PBO:0091965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf antidote-like meiotic drive suppressor Wtf16","termid":"PBO:0091965"}


id: PBO:0076419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor 9b pseudogene 2","termid":"PBO:0076419"}


id: PBO:0036364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malate transmembrane transporter (predicted)","termid":"PBO:0036364"}


id: PBO:0041766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calpain 6","termid":"PBO:0041766"}


id: CHEBI:17202
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IMP","termid":"CHEBI:17202"}


id: MONDO:0957301
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 84","secondary_identifiers":["UMLS:C5830562","OMIM:620409","DOID:0070583","MEDGEN:1841198"],"termid":"MONDO:0957301","xrefs":{"Monarch":{"xref_id":"0957301"}}}


id: MONDO:1010075
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hemophilia B that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hematologic disorder, non-human animal","termid":"MONDO:1011319"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemophilia B, non-human animal","secondary_identifiers":["OMIA:000438"],"termid":"MONDO:1010075","xrefs":{"Monarch":{"xref_id":"1010075"}}}


id: PBO:0035887
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_acetylation_during_vegetative_growth","termid":"PBO:0035887"}


id: PBO:0054618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2023","termid":"PBO:0054618"}


id: PBO:0056013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSM8 homolog, U6 small nuclear RNA associated","termid":"PBO:0056013"}


id: PBO:0039107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AHI1 divergent transcript","termid":"PBO:0039107"}


id: GO:0009240
data:
  {"annotated_genes":["SJAG_04865","SJAG_02380","SJAG_01187","SJAG_03715","SJAG_04307","SJAG_01474","SJAG_03349"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76416],"is_not":false,"summary":null,"term":"GO:0009240"},{"annotations":[78908,76046,81915,116765],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019287"},{"annotations":[113225,117342],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:2001211"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid biosynthetic process","termid":"GO:0008654"},{"relation_name":"is_a","term_name":"isopentenyl diphosphate metabolic process","termid":"GO:0046490"},{"relation_name":"part_of","term_name":"isoprenoid biosynthetic process","termid":"GO:0008299"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01187":null,"SJAG_01474":null,"SJAG_02380":null,"SJAG_03349":null,"SJAG_03715":null,"SJAG_04307":null,"SJAG_04865":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"isopentenyl diphosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"IPP biosynthesis","type":"exact"},{"name":"IPP biosynthetic process","type":"exact"},{"name":"isopentenyl diphosphate anabolism","type":"exact"},{"name":"isopentenyl diphosphate biosynthesis","type":"exact"},{"name":"isopentenyl diphosphate formation","type":"exact"},{"name":"isopentenyl diphosphate synthesis","type":"exact"},{"name":"isopentenyl pyrophosphate biosynthesis","type":"exact"},{"name":"isopentenyl pyrophosphate biosynthetic process","type":"exact"}],"termid":"GO:0009240","terms_by_termid":{"GO:0009240":null,"GO:0019287":null,"GO:2001211":null}}


id: GO:0046203
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyamine catabolic process","termid":"GO:0006598"},{"relation_name":"is_a","term_name":"spermidine metabolic process","termid":"GO:0008216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spermidine catabolic process","synonyms":[{"name":"spermidine breakdown","type":"exact"},{"name":"spermidine catabolism","type":"exact"},{"name":"spermidine degradation","type":"exact"}],"termid":"GO:0046203"}


id: MONDO:0000539
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rhabdoid tumor that involves the striated muscle tissue.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhabdoid tumor","termid":"MONDO:0002728"},{"relation_name":"is_a","term_name":"muscle tissue disorder","termid":"MONDO:0003939"},{"relation_name":"is_a","term_name":"muscle cancer","termid":"MONDO:0005864"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"striated muscle rhabdoid tumor","secondary_identifiers":["DOID:0050924"],"synonyms":[{"name":"striated muscle tissue rhabdoid tumor","type":"exact"},{"name":"striated muscle tissue rhabdoid tumour","type":"exact"}],"termid":"MONDO:0000539","xrefs":{"Monarch":{"xref_id":"0000539"}}}


id: GO:0034527
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1,2-dihydroxy-8-carboxynaphthalene + O2 = 2-carboxy-2-hydroxy-8-carboxychromene.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 1,2-dihydroxy-8-carboxynaphthalene dioxygenase activity (obsolete GO:0034527)","termid":"GO:0034527"}


id: PBO:0083879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ferric enterobactin transmembrane transporter; expressed under conditions of iron deprivation; member of the major facilitator superfamily; expression is regulated by Rcs1p and affected by chloroquine treatment","termid":"PBO:0083879"}


id: PBO:0004350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U6 snRNP-associated protein Lsm4 (predicted)","termid":"PBO:0004350"}


id: MONDO:1011597
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Severe combined immunodeficiency disease that occurs in horse.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"severe combined immunodeficiency disease, non-human animal","termid":"MONDO:1011422"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"severe combined immunodeficiency disease, horse","secondary_identifiers":["OMIA:000220-9796"],"termid":"MONDO:1011597","xrefs":{"Monarch":{"xref_id":"1011597"}}}


id: GO:1903585
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone deubiquitination.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:24526689"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone deubiquitination (obsolete GO:1903585)","synonyms":[{"name":"down regulation of histone deubiquitination","type":"exact"},{"name":"down regulation of histone deubiquitinylation","type":"exact"},{"name":"down regulation of histone deubiquitylation","type":"exact"},{"name":"down-regulation of histone deubiquitination","type":"exact"},{"name":"down-regulation of histone deubiquitinylation","type":"exact"},{"name":"down-regulation of histone deubiquitylation","type":"exact"},{"name":"downregulation of histone deubiquitination","type":"exact"},{"name":"downregulation of histone deubiquitinylation","type":"exact"},{"name":"downregulation of histone deubiquitylation","type":"exact"},{"name":"inhibition of histone deubiquitination","type":"narrow"},{"name":"inhibition of histone deubiquitinylation","type":"narrow"},{"name":"inhibition of histone deubiquitylation","type":"narrow"},{"name":"negative regulation of histone deubiquitinylation","type":"exact"},{"name":"negative regulation of histone deubiquitylation","type":"exact"}],"termid":"GO:1903585"}


id: MONDO:0016644
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Logopenic progressive aphasia (lv-PPA) is a form of primary progressive aphasia (PPA), characterized by impaired single-word retrieval and naming and impaired repetition with spared single-word comprehension and object knowledge.","definition_xrefs":["Orphanet:250831"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary progressive aphasia","termid":"MONDO:0019806"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"logopenic progressive aphasia","secondary_identifiers":["UMLS:C4274665","DOID:0081389","SCTID:716380002","MEDGEN:907332","GARD:10791"],"synonyms":[{"name":"LPA","type":"exact"},{"name":"Logopenic primary progressive aphasia","type":"exact"},{"name":"Logopenic variant PPA","type":"exact"}],"termid":"MONDO:0016644","xrefs":{"Monarch":{"xref_id":"0016644"}}}


id: FYPO:0008197
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which autophagic degradation of the endoplasmic reticulum occurs to a lower extent than normal.","definition_xrefs":["PMID:37553386"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal reticulophagy during vegetative growth","termid":"FYPO:0007445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased reticulophagy during vegetative growth","termid":"FYPO:0008197"}


id: GO:0004592
data:
  {"annotated_genes":["SJAG_03679"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74108],"is_not":false,"summary":null,"term":"GO:0004592"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + (R)-pantoate + beta-alanine = AMP + diphosphate + (R)-pantothenate.","definition_xrefs":["EC:6.3.2.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03679":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"pantoate-beta-alanine ligase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:PANTOATE-BETA-ALANINE-LIG-RXN","RHEA:10912"],"synonyms":[{"name":"(R)-pantoate:beta-alanine ligase (AMP-forming)","type":"related"},{"name":"D-pantoate:beta-alanine ligase (AMP-forming)","type":"related"},{"name":"pantoate-activating enzyme activity","type":"related"},{"name":"pantoic-activating enzyme activity","type":"related"},{"name":"pantothenate synthetase activity","type":"related"}],"termid":"GO:0004592","terms_by_termid":{"GO:0004592":null}}


id: GO:0030788
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + precorrin-2 = S-adenosyl-L-homocysteine + H+ + precorrin-3A.","definition_xrefs":["RHEA:16841","EC:2.1.1.130"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016741","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"precorrin-2 C20-methyltransferase activity","secondary_identifiers":["MetaCyc:2.1.1.130-RXN","KEGG_REACTION:R03948"],"synonyms":[{"name":"S-adenosyl-L-methionine--precorrin-2 methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:precorrin-4 C20-methyltransferase activity","type":"related"}],"termid":"GO:0030788"}


id: PBO:0028028
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_during_meiotic_anaphase_I","termid":"PBO:0028028"}


id: MONDO:0971035
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A thyroid gland carcinoma containing a medullary carcinoma component that is immunohistochemically positive for calcitonin, and follicular cell-derived carcinoma component that is immunohistochemically positive for thyroglobulin.","definition_xrefs":["DOID:0081459"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thyroid gland carcinoma","termid":"MONDO:0015075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"thyroid gland mixed medullary and follicular cell-derived carcinoma","secondary_identifiers":["UMLS:C5706289","MEDGEN:1815194"],"termid":"MONDO:0971035","xrefs":{"Monarch":{"xref_id":"0971035"}}}


id: PBO:0018271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO activating enzyme E1-type Uba2 (predicted)","termid":"PBO:0018271"}


id: PBO:0075194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide G pseudogene 6","termid":"PBO:0075194"}


id: GO:0006963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of antibacterial peptide biosynthesis.","definition_xrefs":["PMID:10973475","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of antibacterial peptide production","termid":"GO:0002803"},{"relation_name":"is_a","term_name":"positive regulation of antimicrobial peptide biosynthetic process","termid":"GO:0002807"},{"relation_name":"is_a","term_name":"regulation of antibacterial peptide biosynthetic process","termid":"GO:0002808"},{"relation_name":"positively_regulates","term_name":"antibacterial peptide biosynthetic process","termid":"GO:0002780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of antibacterial peptide biosynthetic process","synonyms":[{"name":"activation of antibacterial peptide biosynthetic process","type":"narrow"},{"name":"antibacterial peptide induction","type":"exact"},{"name":"antibacterial polypeptide induction","type":"exact"},{"name":"stimulation of antibacterial peptide biosynthetic process","type":"narrow"},{"name":"up regulation of antibacterial peptide biosynthetic process","type":"exact"},{"name":"up-regulation of antibacterial peptide biosynthetic process","type":"exact"},{"name":"upregulation of antibacterial peptide biosynthetic process","type":"exact"}],"termid":"GO:0006963"}


id: GO:0019756
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cyanogenic glycosides, any glycoside containing a cyano group that is released as hydrocyanic acid on acid hydrolysis; such compounds occur in the kernels of various fruits.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoside biosynthetic process","termid":"GO:0016138"},{"relation_name":"is_a","term_name":"cyanogenic glycoside metabolic process","termid":"GO:0042341"},{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"},{"relation_name":"is_a","term_name":"nitrile biosynthetic process","termid":"GO:0080028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"cyanogenic glycoside biosynthetic process","synonyms":[{"name":"cyanogenic glycoside anabolism","type":"exact"},{"name":"cyanogenic glycoside biosynthesis","type":"exact"},{"name":"cyanogenic glycoside formation","type":"exact"},{"name":"cyanogenic glycoside synthesis","type":"exact"}],"termid":"GO:0019756"}


id: PBO:0075528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"speedy/RINGO cell cycle regulator family member E8","termid":"PBO:0075528"}


id: GO:0052859
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the random hydrolysis of (1->4) linkages in (1->4)-beta-D-glucans.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete glucan endo-1,4-beta-glucosidase activity (obsolete GO:0052859)","synonyms":[{"name":"1,4-beta-D-glucan glucanohydrolase activity","type":"exact"},{"name":"beta-1,4-glucan 4-glucanohydrolase activity","type":"exact"},{"name":"beta-1,4-glucan hydrolase activity","type":"exact"},{"name":"beta-1,4-glucanase activity","type":"exact"},{"name":"beta-1->4-glucan hydrolase activity","type":"exact"},{"name":"endo-(1,4)-beta-D-glucanase activity","type":"exact"},{"name":"endo-(1->4)-beta-D-glucanase activity","type":"exact"},{"name":"endo-1,4-beta-D-glucanase activity","type":"exact"},{"name":"endo-1,4-beta-glucanase activity","type":"exact"},{"name":"endo-beta-1,4-glucanase activity","type":"exact"}],"termid":"GO:0052859"}


id: GO:0050621
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-tryptophan + O2 = alpha,beta-didehydrotryptophan + H2O2 + H+.","definition_xrefs":["EC:1.3.3.10","RHEA:19901"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor","termid":"GO:0016634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"tryptophan alpha,beta-oxidase activity","secondary_identifiers":["KEGG_REACTION:R05317","MetaCyc:1.4.3.17-RXN"],"synonyms":[{"name":"L-tryptophan 2',3'-oxidase activity","type":"related"},{"name":"L-tryptophan alpha,beta-dehydrogenase activity","type":"related"},{"name":"L-tryptophan:oxygen alpha,beta-oxidoreductase activity","type":"related"},{"name":"tryptophan a,b-oxidase activity","type":"exact"}],"termid":"GO:0050621"}


id: PBO:0038425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"A2ML1 antisense RNA 1","termid":"PBO:0038425"}


id: MONDO:0032592
data:
  {"annotated_genes":["SJAG_01139"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88059],"is_not":false,"summary":null,"term":"MONDO:0032592"}]},"cv_name":"mondo","definition":"A dilated cardiomyopathy that is characterized by dilated cardiomyopathy of variable severity, with age of onset ranging from 2 to 20 years and that has material basis in homozygous or compound heterozygous mutation in the PPCS gene on chromosome 1p34.","definition_xrefs":["DOID:0081159"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial isolated dilated cardiomyopathy","termid":"MONDO:0700335"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01139":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"cardiomyopathy, dilated, 2c","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4748647","GARD:16305","MEDGEN:1648379","OMIM:618189"],"synonyms":[{"name":"CARDIOMYOPATHY, DILATED, 2C","type":"related"},{"name":"CMD2C","type":"related"}],"termid":"MONDO:0032592","terms_by_termid":{"MONDO:0032592":null},"xrefs":{"Monarch":{"xref_id":"0032592"}}}


id: PBO:0057698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1286","termid":"PBO:0057698"}


id: GO:0019882
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.","definition_xrefs":["PMID:15928678","GOC:add","GO_REF:0000022","ISBN:0781735149","PMID:15771591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system process","termid":"GO:0002376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation","secondary_identifiers":["Wikipedia:Antigen_presentation","GO:0030333"],"synonyms":[{"name":"antigen presentation","type":"exact"},{"name":"antigen processing","type":"exact"}],"termid":"GO:0019882"}


id: GO:0045706
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of salivary gland determination.","definition_xrefs":["GOC:tb","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of salivary gland boundary specification","termid":"GO:0045704"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"salivary gland boundary specification","termid":"GO:0007432"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of salivary gland boundary specification","synonyms":[{"name":"activation of salivary gland determination","type":"narrow"},{"name":"positive regulation of salivary gland determination","type":"exact"},{"name":"stimulation of salivary gland determination","type":"narrow"},{"name":"up regulation of salivary gland determination","type":"exact"},{"name":"up-regulation of salivary gland determination","type":"exact"},{"name":"upregulation of salivary gland determination","type":"exact"}],"termid":"GO:0045706"}


id: PBO:0087641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the GET complex; involved in insertion of proteins into the ER membrane; required for the retrieval of HDEL proteins from the Golgi to the ER in an ERD2 dependent fashion and for normal mitochondrial morphology and inheritance","termid":"PBO:0087641"}


id: GO:0048294
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of isotype switching to IgE isotypes.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of isotype switching","termid":"GO:0045829"},{"relation_name":"is_a","term_name":"regulation of isotype switching to IgE isotypes","termid":"GO:0048293"},{"relation_name":"negatively_regulates","term_name":"isotype switching to IgE isotypes","termid":"GO:0048289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006310"},{"rel_name":"negatively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006310"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006310","GO:0006259"],"is_obsolete":false,"name":"negative regulation of isotype switching to IgE isotypes","synonyms":[{"name":"down regulation of isotype switching to IgE isotypes","type":"exact"},{"name":"down-regulation of isotype switching to IgE isotypes","type":"exact"},{"name":"downregulation of isotype switching to IgE isotypes","type":"exact"},{"name":"inhibition of isotype switching to IgE isotypes","type":"narrow"},{"name":"negative regulation of class switch recombination to IgE isotypes","type":"exact"},{"name":"negative regulation of class switching to IgE isotypes","type":"exact"},{"name":"negative regulation of isotype switch recombination to IgE isotypes","type":"exact"}],"termid":"GO:0048294"}


id: PBO:0110204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial single stranded DNA specific 5'-3' exodeoxyribonuclease Exo5.2","termid":"PBO:0110204"}


id: PBO:0030954
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_acetylation","termid":"PBO:0030954"}


id: GO:0070693
data:
  {"annotated_genes":["SJAG_03061","SJAG_04034"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[110874,118608],"is_not":false,"summary":null,"term":"GO:0070693"}]},"cv_name":"cellular_component","definition":"A protein complex that is formed by the association of positive transcription elongation factor complex b (P-TEFb) with the mRNA capping methyltransferase.","definition_xrefs":["PMID:17332744","PMID:19328067"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03061":null,"SJAG_04034":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"P-TEFb-cap methyltransferase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Cdk9-Pcm1 complex","type":"narrow"},{"name":"P-TEFb-Pcm1 complex","type":"narrow"}],"termid":"GO:0070693","terms_by_termid":{"GO:0070693":null}}


id: PBO:0088532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase PP1 regulatory subunit Reg1","termid":"PBO:0088532"}


id: GO:0061102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a neuroendocrine cell of the stomach epithelium.","definition_xrefs":["GOC:dph","PMID:18173746"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enteroendocrine cell differentiation","termid":"GO:0035883"},{"relation_name":"is_a","term_name":"neuroendocrine cell differentiation","termid":"GO:0061101"},{"relation_name":"part_of","term_name":"stomach development","termid":"GO:0062094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"stomach neuroendocrine cell differentiation","synonyms":[{"name":"gastric neuroendocrine cell differentiation","type":"related"}],"termid":"GO:0061102"}


id: PBO:0035901
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K56_acetylation_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0035901"}


id: PATO:0001624
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A functionality quality held by the bearer when the latter exhibits decreased ability to perform a regular function(s).","definition_xrefs":["PATO:MAH"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"functional","termid":"PATO:0001510"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased functionality","secondary_identifiers":["PATO:0001641","PATO:0001642","PATO:0001556","PATO:0001568"],"synonyms":[{"name":"dysfunction","type":"broad"},{"name":"dysfunctional","type":"broad"},{"name":"having decreased function","type":"exact"},{"name":"impaired","type":"related"},{"name":"lacks function of type","type":"exact"},{"name":"low functionality","type":"exact"},{"name":"partial functionality","type":"exact"}],"termid":"PATO:0001624"}


id: PBO:0038649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA oxidase like","termid":"PBO:0038649"}


id: PBO:0069885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1174, pseudogene","termid":"PBO:0069885"}


id: PBO:0038894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion G protein-coupled receptor A1","termid":"PBO:0038894"}


id: PBO:0044135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTBP2 pseudogene 1","termid":"PBO:0044135"}


id: MONDO:0017491
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"tibial hemimelia","termid":"MONDO:0010144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"tibial hemimelia, bilateral","secondary_identifiers":["icd11.foundation:1562926182","UMLS:C5438440","Orphanet:295079","MEDGEN:1776601"],"synonyms":[{"name":"tibial longitudinal meromelia, bilateral","type":"exact"}],"termid":"MONDO:0017491","xrefs":{"Monarch":{"xref_id":"0017491"}}}


id: PATO:0000233
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000233 touch (obsolete PATO:0000233)","termid":"PATO:0000233"}


id: PBO:0067416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 530, pseudogene","termid":"PBO:0067416"}


id: GO:0071197
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A voltage-gated potassium channel complex that contains the Kv alpha subunits 4.2 and 4.3.","definition_xrefs":["PMID:15356203"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated potassium channel complex","termid":"GO:0008076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Kv4.2-Kv4.3 channel complex","secondary_identifiers":["CORUM:609"],"termid":"GO:0071197"}


id: FYPO:0002437
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form actin cables that are thicker than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cable morphology","termid":"FYPO:0002031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0004803","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"thick actin cables","synonyms":[{"name":"increased actin cable thickness","type":"exact"},{"name":"thick actin cables during mitotic cell cycle","type":"related"},{"name":"thick actin cables during vegetative growth","type":"exact"},{"name":"thick formin-nucleated actin cables","type":"exact"}],"termid":"FYPO:0002437"}


id: GO:0047764
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + caldesmon = ADP + caldesmon phosphate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete caldesmon kinase activity (obsolete GO:0047764)","termid":"GO:0047764"}


id: MONDO:0005773
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Gerstmann syndrome is a very rare neurological disorder characterized by the specific association of acalculia, finger agnosia, left-right disorientation, and agraphia, which is supposed to be secondary to a focal subcortical white matter damage in the parietal lobe.","definition_xrefs":["Orphanet:221117"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder","termid":"MONDO:0005071"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gerstmann syndrome","secondary_identifiers":["MESH:D005862","EFO:0007285","UMLS:C0017494","NORD:1180","GARD:8660","ICD9:784.69","MedDRA:10048608","SCTID:36785009","MEDGEN:42208","DOID:4969","icd11.foundation:1121787098"],"synonyms":[{"name":"GS","type":"related"},{"name":"Gerstmann Badal syndrome","type":"related"},{"name":"Gerstmann tetrad","type":"related"},{"name":"aphasia-angular gyrus syndrome","type":"exact"},{"name":"developmental Gerstmann syndrome","type":"related"}],"termid":"MONDO:0005773","xrefs":{"Monarch":{"xref_id":"0005773"}}}


id: PBO:0046501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERI1 exoribonuclease family member 2","termid":"PBO:0046501"}


id: PBO:0058585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6718","termid":"PBO:0058585"}


id: RO:0002245
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"g is over-expressed in t iff g is expressed in t, and the expression level of g is increased relative to some background.","direct_ancestors":[{"relation_name":"is_a","term_name":"expressed_in","termid":"RO:0002206"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"over-expressed_in","termid":"RO:0002245"}


id: PBO:0043242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"claudin 2","termid":"PBO:0043242"}


id: PBO:0003965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S35","termid":"PBO:0003965"}


id: MOD:01087
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a 2,4,5-trichlorophenyl group for a hydrogen atom.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2,4,5-trichlorophenyl modified residue","termid":"MOD:01087"}


id: FYPO:0002895
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a greater extent than normal during a cellular response to calcium ions. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased transcription during vegetative growth","termid":"FYPO:0000780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000294","FYPO:0006551","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased transcription during cellular response to calcium ion","synonyms":[{"name":"increased transcription during cellular response to calcium","type":"exact"},{"name":"increased transcription during cellular response to calcium ion during mitotic cell cycle","type":"related"},{"name":"increased transcription during cellular response to calcium ion during vegetative growth","type":"exact"},{"name":"increased transcription in response to calcium","type":"exact"}],"termid":"FYPO:0002895"}


id: PR:O13943
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A late secretory pathway protein AVL9 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01052"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"late secretory pathway protein avl9 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H3.14","secondary_identifiers":["UniProtKB:O13943"],"synonyms":[{"name":"Spom972h-AVL9","type":"exact"}],"termid":"PR:O13943"}


id: GO:0072435
data:
  {"annotated_genes":["SJAG_03048","SJAG_04332"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96359,104213],"is_not":false,"summary":null,"term":"GO:0072435"}]},"cv_name":"biological_process","definition":"A process that occurs in response to signals generated as a result of mitotic G2/M transition DNA damage checkpoint signaling.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to mitotic cell cycle checkpoint signaling","termid":"GO:0072414"},{"relation_name":"is_a","term_name":"response to G2 DNA damage checkpoint signaling","termid":"GO:0072426"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03048":null,"SJAG_04332":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to mitotic G2 DNA damage checkpoint signaling","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0072458"],"synonyms":[{"name":"mitotic G2/M transition DNA damage checkpoint effector process","type":"exact"},{"name":"mitotic G2/M transition decatenation checkpoint effector process","type":"related"},{"name":"response to mitotic G2/M transition DNA damage checkpoint signaling","type":"exact"},{"name":"response to mitotic G2/M transition decatenation checkpoint signaling","type":"related"},{"name":"response to signal involved in mitotic G2/M transition DNA damage checkpoint","type":"exact"},{"name":"response to signal involved in mitotic G2/M transition decatenation checkpoint","type":"related"}],"termid":"GO:0072435","terms_by_termid":{"GO:0072435":null}}


id: PBO:0057197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 370","termid":"PBO:0057197"}


id: PBO:0061124
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NLR family pyrin domain containing 13","termid":"PBO:0061124"}


id: PBO:0081999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and SCAN domain containing 32","termid":"PBO:0081999"}


id: PBO:0078786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 10-1","termid":"PBO:0078786"}


id: MONDO:1012782
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Progressive retinal atrophy that occurs in the Whippet breed of dog.","definition_xrefs":["OMIA:002085-9615"],"direct_ancestors":[{"relation_name":"is_a","term_name":"progressive retinal atrophy, dog","termid":"MONDO:1012226"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"progressive retinal atrophy, Whippet, dog","synonyms":[{"name":"retinal atrophy, progressive, Whippet, dog","type":"exact"}],"termid":"MONDO:1012782","xrefs":{"Monarch":{"xref_id":"1012782"}}}


id: PBO:0111943
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribonuclease_3 family","termid":"PBO:0111943"}


id: GO:0018108
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine.","definition_xrefs":["RESID:AA0039"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein phosphorylation","termid":"GO:0006468"},{"relation_name":"is_a","term_name":"peptidyl-tyrosine modification","termid":"GO:0018212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-tyrosine phosphorylation","termid":"GO:0018108"}


id: PBO:0082050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-5' DNA helicase involved in error-free bypass of DNA lesions; binds flap DNA, stimulates activity of Rad27p and Dna2p; prevents crossovers between ectopic sequences by removing substrates for Mus81-Mms4 or Rad1-Rad10 cleavage; homolog of human FANCM Fanconi anemia protein that is involved in stabilizing and remodeling blocked replication forks; member of SF2 DExD/H superfamily of helicases; nonsense or missense mutations in FANCM can make people more likely to get cancer","termid":"PBO:0082050"}


id: PBO:0039432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANK2 antisense RNA 1","termid":"PBO:0039432"}


id: PBO:0083432
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YHR131C","termid":"PBO:0083432"}


id: SO:0002148
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 13th residue (a lysine), from the start of the H2AZ histone protein is acetylated.","definition_xrefs":["PMID:27087541","PMID:24316985","PMID:19385636"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_2AZ_acetylation_site","termid":"SO:0002144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H2AZK13_acetylation_site","synonyms":[{"name":"H2A.ZK13ac","type":"exact"},{"name":"H2AZK13 acetylation site","type":"exact"},{"name":"H2AZK13ac","type":"exact"}],"termid":"SO:0002148"}


id: PBO:0064592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POTE ankyrin domain family member K, pseudogene","termid":"PBO:0064592"}


id: PBO:0047468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fc receptor like A","termid":"PBO:0047468"}


id: MONDO:0003265
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A category of psychiatric disorders which are characterized by emotional or behavioral symptoms that develop within 3 months of a stressor and do not persist for more than an additional 6 months after the stressor is no longer present.","definition_xrefs":["NCIT:C92191"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mental disorder","termid":"MONDO:0005084"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adjustment disorder","secondary_identifiers":["DOID:507","UMLS:C0001546","MEDGEN:1338","MESH:D000275","ICD9:309","ICD9:309.89","icd11.foundation:264310751","ICD9:309.9","SCTID:17226007"],"synonyms":[{"name":"adaptation reaction","type":"related"},{"name":"adjustment disease","type":"exact"},{"name":"adjustment disorder","type":"exact"},{"name":"adjustment reaction","type":"exact"},{"name":"disorder, adjustment","type":"related"},{"name":"disorder, reactive","type":"related"},{"name":"disorders, adjustment","type":"related"},{"name":"disorders, reactive","type":"related"}],"termid":"MONDO:0003265","xrefs":{"Monarch":{"xref_id":"0003265"}}}


id: PBO:0040094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP-ribosyltransferase 1","termid":"PBO:0040094"}


id: PBO:0086067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function that interacts with Ulp1p; a Ubl (ubiquitin-like protein)-specific protease for Smt3p protein conjugates","termid":"PBO:0086067"}


id: FYPO:0008230
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which replication fork arrest at the MPS1 barrier located in the mating-type region is normal (i.e. indistinguishable from wild-type).","direct_ancestors":[{"relation_name":"is_a","term_name":"normal replication fork arrest","termid":"FYPO:0008191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal replication fork arrest at MPS1 barrier","termid":"FYPO:0008230"}


id: PBO:0062526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily U member 1","termid":"PBO:0062526"}


id: PBO:0110461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional coactivator for ribosomal proteins via TOR signaling pathway Ifh1","termid":"PBO:0110461"}


id: GO:0033059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The deposition or aggregation of coloring matter in a cell.","definition_xrefs":["GOC:mtg_MIT_16mar07"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"},{"relation_name":"is_a","term_name":"pigmentation","termid":"GO:0043473"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular pigmentation","termid":"GO:0033059"}


