# terms

id: PBO:0082363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Autophagy-specific subunit of phosphatidylinositol 3-kinase complex I; Atg14p targets complex I to the phagophore assembly site (PAS); required for localizing additional ATG proteins to the PAS; required for overflow degradation of misfolded proteins when ERAD is saturated; homolog of human Barkor; other members are Vps34, Vps15, and Vps30p","termid":"PBO:0082363"}


id: GO:1901437
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of toluene metabolic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of metabolic process","termid":"GO:0019222"},{"relation_name":"regulates","term_name":"toluene metabolic process","termid":"GO:0018970"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of toluene metabolic process","synonyms":[{"name":"regulation of methylbenzene metabolic process","type":"exact"},{"name":"regulation of methylbenzene metabolism","type":"exact"},{"name":"regulation of toluene metabolism","type":"exact"}],"termid":"GO:1901437"}


id: GO:0048330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of axial mesoderm cell fate specification.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of axial mesodermal cell fate specification","termid":"GO:0048328"},{"relation_name":"is_a","term_name":"positive regulation of mesodermal cell fate specification","termid":"GO:0048337"},{"relation_name":"positively_regulates","term_name":"axial mesodermal cell fate specification","termid":"GO:0048327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of axial mesodermal cell fate specification","synonyms":[{"name":"activation of axial mesodermal cell fate specification","type":"narrow"},{"name":"stimulation of axial mesodermal cell fate specification","type":"narrow"},{"name":"up regulation of axial mesodermal cell fate specification","type":"exact"},{"name":"up-regulation of axial mesodermal cell fate specification","type":"exact"},{"name":"upregulation of axial mesodermal cell fate specification","type":"exact"}],"termid":"GO:0048330"}


id: MONDO:0006659
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Common occlusive arterial disease which is caused by atherosclerosis. It is characterized by lesions in the innermost layer (arterial intima) of arteries including the aorta and its branches to the extremities. Risk factors include smoking, hyperlipidemia, and hypertension.","definition_xrefs":["MESH:D001162"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coronary atherosclerosis","termid":"MONDO:0021661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"arteriosclerosis obliterans","secondary_identifiers":["UMLS:C0003851","EFO:1000820","DOID:5160","ICD9:440.8","SCTID:361133006","MEDGEN:13915","MedDRA:10065418"],"synonyms":[{"name":"arteriosclerosis obliterans (disorder) [ambiguous]","type":"exact"}],"termid":"MONDO:0006659","xrefs":{"Monarch":{"xref_id":"0006659"}}}


id: PBO:0045749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EBP like","termid":"PBO:0045749"}


id: PBO:0044301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b5 type A pseudogene 4","termid":"PBO:0044301"}


id: MONDO:0017429
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete non-syndromic limb malformation (obsolete MONDO:0015227)","termid":"MONDO:0015227"}],"gene_count":0,"genotype_count":0,"name":"obsolete joint formation defects (obsolete MONDO:0017429)","secondary_identifiers":["Orphanet:294949","icd11.foundation:1429730271"],"termid":"MONDO:0017429","xrefs":{"Monarch":{"xref_id":"0017429"}}}


id: PBO:0067010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 18, pseudogene","termid":"PBO:0067010"}


id: PBO:0063756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHB1 pseudogene 21","termid":"PBO:0063756"}


id: PBO:0027102
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_rDNA_antisense_small_RNA_level","termid":"PBO:0027102"}


id: GO:1901987
data:
  {"annotated_genes":["SJAG_04259","SJAG_04597","SJAG_04332","SJAG_03353","SJAG_02810","SJAG_04671","SJAG_02563","SJAG_00100","SJAG_01050","SJAG_03720","SJAG_02451","SJAG_04287","SJAG_03695","SJAG_02026","SJAG_00666","SJAG_01680","SJAG_01076","SJAG_02098","SJAG_00318","SJAG_02576","SJAG_00526","SJAG_01901","SJAG_03327","SJAG_04140","SJAG_01210","SJAG_02723","SJAG_01118","SJAG_06592","SJAG_02342","SJAG_03529","SJAG_01429","SJAG_01801","SJAG_01805","SJAG_03309","SJAG_00364","SJAG_03699","SJAG_01825","SJAG_02169","SJAG_00640","SJAG_04999","SJAG_05346","SJAG_01311","SJAG_00216","SJAG_04699","SJAG_02266","SJAG_00256","SJAG_00082","SJAG_01084","SJAG_01456","SJAG_00600","SJAG_00214","SJAG_03681","SJAG_02392","SJAG_01605","SJAG_02380","SJAG_03927","SJAG_04464","SJAG_01146","SJAG_02404","SJAG_01837","SJAG_03073","SJAG_01677","SJAG_00117","SJAG_03026","SJAG_01044","SJAG_01855","SJAG_02498","SJAG_00169","SJAG_01330","SJAG_04394","SJAG_03126","SJAG_03486","SJAG_01082","SJAG_00623","SJAG_01000","SJAG_04573","SJAG_01873","SJAG_05978","SJAG_02771","SJAG_04280","SJAG_04943","SJAG_02336","SJAG_00429","SJAG_00883","SJAG_03591","SJAG_00996","SJAG_01010","SJAG_02858","SJAG_03942","SJAG_02736","SJAG_01297","SJAG_00071","SJAG_03067","SJAG_04884","SJAG_02332","SJAG_01401","SJAG_04486","SJAG_03160","SJAG_04126","SJAG_03438","SJAG_03898","SJAG_01679","SJAG_04968","SJAG_00327","SJAG_03048","SJAG_00486","SJAG_05373","SJAG_00145","SJAG_00991","SJAG_03854","SJAG_01708","SJAG_03602","SJAG_01515","SJAG_01205","SJAG_02592","SJAG_02074","SJAG_03592"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108190],"is_not":false,"summary":null,"term":"GO:1901987"},{"annotations":[109066,115643,117762,113815,105713,101405,110094,116131,92535],"is_not":false,"rel_names":["negatively_regulates","is_a","regulates"],"summary":null,"term":"GO:1902426"},{"annotations":[116358,108148],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905318"},{"annotations":[80681],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044778"},{"annotations":[93243,108449,117919],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033315"},{"annotations":[117920,90874,116121,108450],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051598"},{"annotations":[77119,118531],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033316"},{"annotations":[96221,103261,102357,117865,91811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044878"},{"annotations":[79833,81884,113052,116329,95373,118093,117866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044773"},{"annotations":[118970,101172,76642,102358,74071,93244,108452,118665,72857,81268,95776,111162,101005,117921,119142,113890,80677],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033314"},{"annotations":[103440,117764,90756,104181,110733],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031568"},{"annotations":[93121,111518],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031571"},{"annotations":[117867,96354,100242,97666],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031569"},{"annotations":[118883,113584,60831,61540,76994,93245,67830,81141,90935,111163,62364,102872,74073,101174,108453],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007095"},{"annotations":[80679,104182,90982,90936,108454,113585,101175,96355,117923,75647,109502,81053,113891,81140,102678,93246,76081,92258,97829],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031573"},{"annotations":[103618,116361,101247,108150,111754,117420],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007094"},{"annotations":[80673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031578"},{"annotations":[104188],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001100"},{"annotations":[93972,100691,95140,93558],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000134"},{"annotations":[95030,60729,106324,113672,108847,58822,114336,102818,113290,116330,108484,96180,95374,80335],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010972"},{"annotations":[72427,80337],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110031"},{"annotations":[100507],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902103"},{"annotations":[96010],"is_not":false,"rel_names":["regulates","negatively_regulates","is_a"],"summary":null,"term":"GO:0140499"},{"annotations":[104195,91813,95564,113817],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031536"},{"annotations":[107804,108490,118937,104196,107642,111031],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1900087"},{"annotations":[95615,118347,93552,96223,75217,110414,100815,72475,89871,103578,112192,109068,105310,113055,100243,118536,93952,89862,96184],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010971"},{"annotations":[89666,103211],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905287"},{"annotations":[75219],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110032"},{"annotations":[115648],"is_not":false,"rel_names":["is_a","regulates","positively_regulates"],"summary":null,"term":"GO:1905326"},{"annotations":[96978],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905191"},{"annotations":[118538],"is_not":false,"rel_names":["positively_regulates","is_a","regulates"],"summary":null,"term":"GO:0090267"},{"annotations":[99512,116628,101962,95618,103927,113230,104203],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045842"},{"annotations":[72912,78318,112869,72053],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007096"},{"annotations":[113821],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010389"},{"annotations":[103160],"is_not":false,"rel_names":["regulates","is_a"],"summary":null,"term":"GO:1905325"},{"annotations":[110202],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901993"},{"annotations":[93564,117200,78467,76717,110739,117766],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007089"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell cycle phase transition.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie","PMID:22841721"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"regulates","term_name":"cell cycle phase 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of cell cycle phase transition","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"cell cycle control","type":"exact"},{"name":"regulation of cell cycle transition","type":"exact"}],"termid":"GO:1901987","terms_by_termid":{"GO:0001100":null,"GO:0007089":null,"GO:0007094":null,"GO:0007095":null,"GO:0007096":null,"GO:0010389":null,"GO:0010971":null,"GO:0010972":null,"GO:0031536":null,"GO:0031568":null,"GO:0031569":null,"GO:0031571":null,"GO:0031573":null,"GO:0031578":null,"GO:0033314":null,"GO:0033315":null,"GO:0033316":null,"GO:0044773":null,"GO:0044778":null,"GO:0044878":null,"GO:0045842":null,"GO:0051598":null,"GO:0090267":null,"GO:0110031":null,"GO:0110032":null,"GO:0140499":null,"GO:1900087":null,"GO:1901987":null,"GO:1901993":null,"GO:1902103":null,"GO:1902426":null,"GO:1905191":null,"GO:1905287":null,"GO:1905318":null,"GO:1905325":null,"GO:1905326":null,"GO:2000134":null}}


id: PATO:0002526
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anterodistally.","definition_xrefs":["PATOC:EJS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orientation","termid":"PATO:0000133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anterodistal orientation","synonyms":[{"name":"antero-distal orientation","type":"exact"}],"termid":"PATO:0002526"}


id: FYPO:0007365
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphoenolpyruvate measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular phosphoenolpyruvate level","synonyms":[{"name":"decreased cellular PEP level","type":"exact"},{"name":"decreased cellular phosphoenolpyruvate level during mitotic cell cycle","type":"related"},{"name":"decreased cellular phosphoenolpyruvate level during vegetative growth","type":"exact"},{"name":"decreased level of phosphoenolpyruvate in cell","type":"exact"},{"name":"reduced cellular phosphoenolpyruvate level","type":"exact"}],"termid":"FYPO:0007365"}


id: MOD:02046
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an L-glutamine residue crosslinked to one or more amino acid residues.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-glutamine residue","termid":"MOD:00907"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crosslinked L-glutamine residue","synonyms":[{"name":"XlnkGln","type":"exact"}],"termid":"MOD:02046"}


id: FYPO:0000998
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell becomes elongated, i.e. has a greater length and length:diameter ratio than normal, when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah","PMID:19366728"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated cell","termid":"FYPO:0000017"},{"relation_name":"is_a","term_name":"abnormal cell morphology during nitrogen starvation","termid":"FYPO:0000995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000005","FYPO:0001985"],"is_obsolete":false,"name":"elongated cell during nitrogen starvation","synonyms":[{"name":"cell morphology, elongated cell during nitrogen starvation","type":"exact"},{"name":"elongated cell during nitrogen depletion","type":"exact"},{"name":"elongated cell during nitrogen deprivation","type":"exact"},{"name":"gain of polarization during quiescence","type":"related"},{"name":"long cell during nitrogen starvation","type":"exact"}],"termid":"FYPO:0000998"}


id: SO:0002199
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The pseudogene has no parent. It is the original gene, which is functional in some species but disrupted in some way (indels, mutation, recombination) in another species or strain.","direct_ancestors":[{"relation_name":"is_a","term_name":"pseudogenic_tRNA","termid":"SO:0000778"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unitary_pseudogenic_tRNA","synonyms":[{"name":"INSDC_feature:tRNA","type":"broad"},{"name":"INSDC_qualifier:unitary","type":"exact"},{"name":"unitary pseudogenic tRNA","type":"exact"}],"termid":"SO:0002199"}


id: GO:0097106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that results in the assembly, arrangement of constituent parts, or disassembly of a postsynaptic density, a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse.","definition_xrefs":["PMID:21525273","GOC:BHF","GOC:sjp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"postsynaptic specialization organization","termid":"GO:0099084"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"postsynaptic density organization","synonyms":[{"name":"PSD organization","type":"exact"},{"name":"post synaptic density organization","type":"exact"},{"name":"post-synaptic density organization","type":"exact"},{"name":"postsynaptic density organisation","type":"exact"}],"termid":"GO:0097106"}


id: PBO:0081370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 208","termid":"PBO:0081370"}


id: PBO:0038769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ACTR6 pseudogene 1","termid":"PBO:0038769"}


id: PR:000050512
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A meiotic recombination protein rec8 (Schizosaccharomyces pombe) that lacks phosphorylation at the position equivalent to Ser-412 and that has been phosphorylated at the position equivalent to Ser-450 of the amino acid sequence represented by UniProtKB:P36626. Example: UniProtKB:P36626, Ser-412, PR:000026291|Ser-450, MOD:00046.","definition_xrefs":["PRO:DAN","PMID:33888556","PomBase:VW"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic recombination protein rec8 (Schizosaccharomyces pombe)","termid":"PR:000050510"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rec8/Phos:(S450),UnPhos(S412)","pombase_gene_id":"SPBC29A10.14","synonyms":[{"name":"PomBase_original_PRO_term_name: meiotic recombination protein rec8 phosphorylated 2 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-rec8/Phos:2","type":"exact"},{"name":"UniProtKB:P36626, Ser-412, PR:000026291|Ser-450, MOD:00046","type":"narrow"},{"name":"rec8/Phos:(S450),UnPhos(S412)","type":"exact"}],"termid":"PR:000050512"}


id: MONDO:0000253
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Either of two diseases resulting from fungal infection of the hair shafts. Black piedra occurs mainly in and on the hairs of the scalp and is caused by Piedraia hortae; white piedra occurs in and on the hairs of the scalp, beard, mustache and genital areas and is caused by Trichosporon species.","definition_xrefs":["MESH:D010854"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of pilosebaceous unit","termid":"MONDO:0002917"},{"relation_name":"is_a","term_name":"superficial mycosis","termid":"MONDO:0024268"},{"relation_name":"is_a","term_name":"skin appendage disorder","termid":"MONDO:0024481"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piedra","secondary_identifiers":["MEDGEN:45923","SCTID:402135006","UMLS:C0031898"],"synonyms":[{"name":"Piedras","type":"related"},{"name":"Piedras, White","type":"narrow"},{"name":"Piedras, black","type":"narrow"},{"name":"White Piedras","type":"narrow"},{"name":"White piedra","type":"narrow"},{"name":"black Piedras","type":"narrow"},{"name":"black piedra","type":"narrow"},{"name":"hair shaft fungal infectious disease","type":"exact"},{"name":"piedra, White","type":"narrow"},{"name":"piedra, black","type":"narrow"},{"name":"steroid-modified tinea infection","type":"narrow"}],"termid":"MONDO:0000253","xrefs":{"Monarch":{"xref_id":"0000253"}}}


id: PBO:0012216
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-imports","termid":"PBO:0012216"}


id: PBO:0053288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIMD1 antisense RNA 1","termid":"PBO:0053288"}


id: PBO:0005587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NatA N-acetyltransferase subunit Naa50 (predicted)","termid":"PBO:0005587"}


id: GO:0043225
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + inorganic anion(out) = ADP + phosphate + inorganic anion(in).","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transmembrane transporter activity","termid":"GO:0015103"},{"relation_name":"is_a","term_name":"ATPase-coupled transmembrane transporter activity","termid":"GO:0042626"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"ATPase-coupled inorganic anion transmembrane transporter activity","secondary_identifiers":["Reactome:R-HSA-1454916","Reactome:R-HSA-5690340"],"synonyms":[{"name":"ATP-dependent anion transmembrane transporter activity","type":"exact"},{"name":"ATPase-coupled anion transmembrane transporter activity","type":"exact"},{"name":"anion ABC transporter","type":"narrow"},{"name":"anion transmembrane-transporting ATPase activity","type":"related"},{"name":"anion-transporting ATPase activity","type":"exact"}],"termid":"GO:0043225"}


id: PBO:0053369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 290","termid":"PBO:0053369"}


id: PR:O42650
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein kinase RIO1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10593:SF5","PRO:DNx","OMA:SCHPO00494"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase rio1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC10F6.10","secondary_identifiers":["UniProtKB:O42650"],"synonyms":[{"name":"Spom972h-RIOK1","type":"exact"}],"termid":"PR:O42650"}


id: PR:000044505
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GTP-binding protein ypt5 (Schizosaccharomyces pombe) that is prenylated with Geranylgeranyl moieties on the Cys residues within the CxC motif. In addition, the C-terminal Cys is further methylated. Example: UniProtKB:P36586-1, Cys-209/Cys-211, MOD:00113|Cys-211, MOD:00114.","definition_xrefs":["PMID:1597466","PMID:8226998","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GTP-binding protein ypt5 (Schizosaccharomyces pombe)","termid":"PR:000030005"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP-binding protein ypt5 methylated and prenylated 1 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC6F6.15","synonyms":[{"name":"SpYPT5p prenylated","type":"related"}],"termid":"PR:000044505"}


id: MONDO:0011790
data:
  {"annotated_genes":["SJAG_00835"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87356],"is_not":false,"summary":null,"term":"MONDO:0011790"}]},"cv_name":"mondo","definition":"Amish lethal microcephaly is a very rare syndrome characterized by extreme microcephaly and early death, within the first year.","definition_xrefs":["Orphanet:99742"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiamine-responsive dysfunction syndrome","termid":"MONDO:0000152"},{"relation_name":"is_a","term_name":"microcephaly","termid":"MONDO:0001149"},{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00835":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0700092"],"is_obsolete":false,"name":"Amish lethal microcephaly","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:8606","MESH:C538247","MEDGEN:375938","OMIM:607196","SCTID:702437000","UMLS:C1846648"],"synonyms":[{"name":"Amish lethal microcephaly","type":"exact"},{"name":"MCPHA","type":"related"},{"name":"microcephaly, Amish type","type":"related"},{"name":"thiamine metabolism dysfunction syndrome 3 (microcephaly type)","type":"related"}],"termid":"MONDO:0011790","terms_by_termid":{"MONDO:0011790":null},"xrefs":{"Monarch":{"xref_id":"0011790"}}}


id: GO:0072091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of stem cell proliferation. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell population proliferation","termid":"GO:0042127"},{"relation_name":"regulates","term_name":"stem cell proliferation","termid":"GO:0072089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of stem cell proliferation","termid":"GO:0072091"}


id: PBO:0113312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in pre-rRNA processing; associated with U3 snRNP; component of small ribosomal subunit (SSU) processome; ortholog of the human U3-55k protein","termid":"PBO:0113312"}


id: FYPO:0002105
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has a normal shape but is inviable.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"normal vegetative cell shape","termid":"FYPO:0001125"},{"relation_name":"is_a","term_name":"normal vegetative cell shape","termid":"FYPO:0001125"},{"relation_name":"is_a","term_name":"inviable vegetative cell with normal cell morphology","termid":"FYPO:0002199"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"has_part","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0000257","FYPO:0000004","FYPO:0001320"],"is_obsolete":false,"name":"inviable vegetative cell with normal cell shape","synonyms":[{"name":"inviable cell with normal cell shape during vegetative growth","type":"exact"},{"name":"inviable vegetative cell with normal cell shape during mitotic cell cycle","type":"related"},{"name":"lethal; vegetative cell with normal cell shape","type":"exact"}],"termid":"FYPO:0002105"}


id: SO:0002358
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that encodes a vault RNA.","definition_xrefs":["PMID:22058117","PMID:30773316","PMID:9535882","PMID:19491402","PMID:22926522","PMID:19298825"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ncRNA_gene","termid":"SO:0001263"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vault_RNA_gene","termid":"SO:0002358"}


id: PBO:0080480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vault RNA 3-1, pseudogene","termid":"PBO:0080480"}


id: MOD:01614
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a glycine residue to glycyl phospho-5'-adenosine.","definition_xrefs":["PubMed:16388576","PubMed:9632726","RESID:AA0511"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified glycine residue","termid":"MOD:00908"},{"relation_name":"is_a","term_name":"adenylated residue","termid":"MOD:01165"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycyl phospho-5'-adenosine","synonyms":[{"name":"(2-aminoacetyl)oxy-([(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy)phosphinic acid","type":"exact"},{"name":"([(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl)-2-aminoethanoate","type":"exact"},{"name":"5'-adenylic-glyinate","type":"exact"},{"name":"MOD_RES Glycyl adenylate","type":"exact"},{"name":"aminoacetyl [5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl hydrogen phosphate","type":"exact"},{"name":"glycine monoanhydride with 5'-adenylic acid","type":"exact"},{"name":"glycyl 5'-adenylate","type":"exact"},{"name":"glycyl adenosine-5'-phosphate","type":"exact"},{"name":"glycyl phospho-5'-adenosine","type":"exact"},{"name":"glycyladenylate","type":"exact"}],"termid":"MOD:01614"}


id: PBO:0030078
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_lysine_import_during_vegetative_growth","termid":"PBO:0030078"}


id: PBO:0089268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pumilio family RNA-binding protein Puf6","termid":"PBO:0089268"}


id: GO:0071846
data:
  {"annotated_genes":["SJAG_03455"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76249],"is_not":false,"summary":null,"term":"GO:0071846"}]},"cv_name":"biological_process","definition":"An actin filament severing process that results in the removal of actin filament branches specifically at the branch points.","definition_xrefs":["GOC:jh","GOC:mah","PMID:20362448"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin filament severing","termid":"GO:0051014"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03455":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"actin filament debranching","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0071846","terms_by_termid":{"GO:0071846":null}}


id: SO:0002245
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A partially_duplicated_transcript where the 5' end of the transcript is duplicated.","direct_ancestors":[{"relation_name":"is_a","term_name":"partially_duplicated_transcript","termid":"SO:0002244"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_prime_duplicated_transcript","synonyms":[{"name":"5' duplicated transcript","type":"exact"},{"name":"five prime duplicated transcript","type":"exact"},{"name":"five prime partially duplicated transcript","type":"exact"}],"termid":"SO:0002245"}


id: PBO:0065567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostaglandin F2 receptor inhibitor","termid":"PBO:0065567"}


id: PBO:0054730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2139","termid":"PBO:0054730"}


id: PBO:0046354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 12","termid":"PBO:0046354"}


id: GO:1902359
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any Notch signaling pathway that is involved in somitogenesis.","definition_xrefs":["PMID:21795391","GOC:dph","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Notch signaling pathway","termid":"GO:0007219"},{"relation_name":"part_of","term_name":"somitogenesis","termid":"GO:0001756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"Notch signaling pathway involved in somitogenesis","synonyms":[{"name":"N signaling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"N signaling pathway involved in somitogenesis","type":"exact"},{"name":"N signalling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"N signalling pathway involved in somitogenesis","type":"exact"},{"name":"Notch receptor signaling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"Notch receptor signaling pathway involved in somitogenesis","type":"exact"},{"name":"Notch receptor signalling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"Notch receptor signalling pathway involved in somitogenesis","type":"exact"},{"name":"Notch signaling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"Notch signalling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"Notch signalling pathway involved in somitogenesis","type":"exact"},{"name":"Notch-receptor signaling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"Notch-receptor signaling pathway involved in somitogenesis","type":"exact"},{"name":"Notch-receptor signalling pathway involved in formation of mesodermal clusters","type":"exact"},{"name":"Notch-receptor signalling pathway involved in somitogenesis","type":"exact"}],"termid":"GO:1902359"}


id: PBO:0081555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 474","termid":"PBO:0081555"}


id: MONDO:0019546
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete other acquired skin disease (obsolete MONDO:0019546)","secondary_identifiers":["Orphanet:90077"],"termid":"MONDO:0019546","xrefs":{"Monarch":{"xref_id":"0019546"}}}


id: GO:0033594
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydroxyisoflavone stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to phenylpropanoid","termid":"GO:0080184"},{"relation_name":"is_a","term_name":"response to ketone","termid":"GO:1901654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to hydroxyisoflavone","termid":"GO:0033594"}


id: MOD:00118
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-cysteine residue and an L-histidine residue by a thioether bond to form 2'-(S-L-cysteinyl)-L-histidine.","definition_xrefs":["DeltaMass:0","PubMed:6210696","RESID:AA0109"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thioether crosslinked residues","termid":"MOD:00687"},{"relation_name":"is_a","term_name":"crosslinked L-histidine residue","termid":"MOD:02048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"2'-(S-L-cysteinyl)-L-histidine","synonyms":[{"name":"(2R)-2-amino-3-[(4-[(2S)-2-amino-2-carboxyethyl]-1H-imidazol-2-yl)sulfanyl]propanoic acid","type":"exact"},{"name":"(2S)-2-amino-3-[2-([(2R)-2-amino-2-carboxyethyl]sulfanyl)-1H-imidazol-4-yl]propanoic acid","type":"exact"},{"name":"2'-(L-cystein-S-yl)-L-histidine","type":"exact"},{"name":"CROSSLNK 2'-(S-cysteinyl)-histidine (Cys-His)","type":"exact"},{"name":"S-(2'-histidyl)cysteine","type":"exact"},{"name":"S-(2-histidyl)- (crosslinked to cysteine)","type":"exact"},{"name":"XLNK-SCys-2'His","type":"exact"}],"termid":"MOD:00118"}


id: PBO:0049458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycogenin 1 pseudogene 3","termid":"PBO:0049458"}


id: PBO:0091306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-citrate synthase subunit 2","termid":"PBO:0091306"}


id: MONDO:0005216
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Carcinoma, predominantly squamous cell, arising from the epithelial cells of the hypopharynx.","definition_xrefs":["NCIT:C9465"],"direct_ancestors":[{"relation_name":"is_a","term_name":"head and neck carcinoma","termid":"MONDO:0002038"},{"relation_name":"is_a","term_name":"hypopharynx cancer","termid":"MONDO:0005806"},{"relation_name":"is_a","term_name":"carcinoma of pharynx","termid":"MONDO:0021345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"hypopharyngeal carcinoma","secondary_identifiers":["EFO:0002938","UMLS:C1368404","MEDGEN:237150"],"synonyms":[{"name":"cancer of hypopharynx","type":"broad"},{"name":"cancer of the hypopharynx","type":"broad"},{"name":"carcinoma of hypopharynx","type":"exact"},{"name":"carcinoma of the hypopharynx","type":"exact"},{"name":"hypopharyngeal cancer","type":"broad"},{"name":"hypopharyngeal carcinoma","type":"exact"},{"name":"hypopharyngeal throat cancer","type":"broad"},{"name":"hypopharynx carcinoma","type":"exact"}],"termid":"MONDO:0005216","xrefs":{"Monarch":{"xref_id":"0005216"}}}


id: FYPO:0002125
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the plasma membrane is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to plasma membrane","termid":"FYPO:0004838"},{"relation_name":"is_a","term_name":"abnormal protein localization to cell periphery during vegetative growth","termid":"FYPO:0005570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"abnormal protein localization to plasma membrane during vegetative growth","synonyms":[{"name":"abnormal protein localisation to plasma membrane during vegetative growth","type":"exact"},{"name":"abnormal protein localization in plasma membrane during vegetative growth","type":"exact"},{"name":"abnormal protein localization to plasma membrane during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002125"}


id: PBO:0084862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the small subunit","termid":"PBO:0084862"}


id: PBO:0068646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 27, pseudogene","termid":"PBO:0068646"}


id: MONDO:0015485
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete primary hereditary glaucoma (obsolete MONDO:0015485)","secondary_identifiers":["Orphanet:156005"],"synonyms":[{"name":"primary glaucoma","type":"related"}],"termid":"MONDO:0015485","xrefs":{"Monarch":{"xref_id":"0015485"}}}


id: MONDO:0010098
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Taurodontism is a dental anomaly characterized by an elongated pulp chamber, displaced toward the apical floor of the tooth with no constriction at the level of the cemento-enamel junction, and short roots. It most frequently affects permanent molar teeth. Taurodontism increases the risk of pulp exposure. It can be isolated or associated with certain syndromes such as Down syndrome, amelogenesis imperfecta, and Klinefelter syndrome.","definition_xrefs":["Orphanet:3289"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"tooth disorder","termid":"MONDO:0006999"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taurodontism","secondary_identifiers":["OMIM:272700","MESH:C536946","MEDGEN:75596","UMLS:C0266039","HP:0000679","icd11.foundation:356382747","SCTID:51744007"],"synonyms":[{"name":"Bull teeth","type":"related"},{"name":"large pulp chambers in the molars","type":"related"},{"name":"taurodontism","type":"exact"},{"name":"taurodontism (disease)","type":"exact"}],"termid":"MONDO:0010098","xrefs":{"Monarch":{"xref_id":"0010098"}}}


id: PBO:0013768
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human CNBP","termid":"PBO:0013768"}


id: PBO:0085633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in GPI anchor synthesis; multimembrane-spanning protein that localizes to the endoplasmic reticulum; highly conserved among eukaryotes; GPI stands for glycosylphosphatidylinositol","termid":"PBO:0085633"}


id: GO:0031348
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of defense response","termid":"GO:0031347"},{"relation_name":"is_a","term_name":"negative regulation of response to stimulus","termid":"GO:0048585"},{"relation_name":"negatively_regulates","term_name":"defense response","termid":"GO:0006952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of defense response","synonyms":[{"name":"down regulation of defense response","type":"exact"},{"name":"down-regulation of defense response","type":"exact"},{"name":"downregulation of defense response","type":"exact"},{"name":"inhibition of defense response","type":"narrow"}],"termid":"GO:0031348"}


id: GO:0048920
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of a relatively undifferentiated cell along the developing posterior lateral line, originating from cranial ectodermal placodes situated behind the ear. The neuromast primordium deposits proneuromasts along the lateral line, from which the neuromasts will develop.","definition_xrefs":["PMID:15832385","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuromast primordium migration","termid":"GO:0048883"},{"relation_name":"part_of","term_name":"posterior lateral line development","termid":"GO:0048916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"posterior lateral line neuromast primordium migration","synonyms":[{"name":"PLL neuromast primordium migration","type":"exact"}],"termid":"GO:0048920"}


id: GO:0120071
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of any pyloric antrum smooth muscle contraction.","definition_xrefs":["PMID:15890336","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gastro-intestinal system smooth muscle contraction","termid":"GO:1904304"},{"relation_name":"regulates","term_name":"pyloric antrum smooth muscle contraction","termid":"GO:0120065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of pyloric antrum smooth muscle contraction","termid":"GO:0120071"}


id: PBO:0057516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 634","termid":"PBO:0057516"}


id: MONDO:0007838
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A multiple congenital anomaly/intellectual disability contiguous gene syndrome caused by partial deletion of the long arm of chromosome 11.","definition_xrefs":["Orphanet:2308"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 11","termid":"MONDO:0016910"},{"relation_name":"is_a","term_name":"syndromic constitutional thrombocytopenia","termid":"MONDO:0018795"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"Jacobsen syndrome","secondary_identifiers":["GARD:307","OMIM:147791","icd11.foundation:27788176","DOID:0111723","SCTID:715438008","MEDGEN:162878","NCIT:C75457","UMLS:C0795841"],"synonyms":[{"name":"11q terminal deletion disorder","type":"exact"},{"name":"Del(11)(q23.3)","type":"exact"},{"name":"Del(11)(qter)","type":"exact"},{"name":"JBS","type":"related"},{"name":"Jacobsen syndrome","type":"exact"},{"name":"Jacobsen syndrome, Isolated cases","type":"exact"},{"name":"chromosome 11q deletion syndrome","type":"related"},{"name":"distal deletion 11q","type":"exact"},{"name":"distal monosomy 11q","type":"exact"},{"name":"monosomy 11qter","type":"exact"},{"name":"partial 11q monosomy syndrome","type":"related"},{"name":"telomeric deletion 11q","type":"exact"}],"termid":"MONDO:0007838","xrefs":{"Monarch":{"xref_id":"0007838"}}}


id: MONDO:0002600
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete mixed germ cell cancer (obsolete MONDO:0002600)","termid":"MONDO:0002600","xrefs":{"Monarch":{"xref_id":"0002600"}}}


id: MONDO:0020213
data:
  {"annotated_genes":["SJAG_00638"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88190],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007376"}]},"cv_name":"mondo","definition":"The stromal corneal dystrophies refer to a group of rare genetically determined corneal dystrophies (CDs) characterized by lesions affecting the corneal stroma, and variable effects on vision depending on the type of dystrophy.","definition_xrefs":["Orphanet:98626"],"direct_ancestors":[{"relation_name":"is_a","term_name":"corneal dystrophy","termid":"MONDO:0018102"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00638":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"stromal corneal dystrophy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:20973","ICD9:371.56","icd11.foundation:1392780216","GARD:19519","UMLS:C0038457","DOID:0060442","SCTID:231931001"],"synonyms":[{"name":"corneal dystrophy (disease) of substantia propria of cornea","type":"exact"},{"name":"corneal stromal dystrophy","type":"exact"},{"name":"stromal dystrophy","type":"related"},{"name":"substantia propria of cornea corneal dystrophy (disease)","type":"exact"}],"termid":"MONDO:0020213","terms_by_termid":{"MONDO:0007376":null},"xrefs":{"Monarch":{"xref_id":"0020213"}}}


id: GO:2000621
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of DNA replication termination.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated DNA replication","termid":"GO:0090329"},{"relation_name":"regulates","term_name":"DNA replication termination","termid":"GO:0006274"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006260","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"regulation of DNA replication termination","termid":"GO:2000621"}


id: GO:0019962
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type I interferon. Type I interferons include the interferon-alpha, beta, delta, epsilon, zeta, kappa, tau, and omega gene families.","definition_xrefs":["ISBN:0126896631","PMID:15546383","GOC:add","PMID:16681834"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interferon binding","termid":"GO:0019961"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"type I interferon binding","synonyms":[{"name":"interferon-alpha binding","type":"narrow"},{"name":"interferon-alpha/beta binding","type":"narrow"},{"name":"interferon-beta binding","type":"narrow"},{"name":"interferon-delta binding","type":"narrow"},{"name":"interferon-epsilon binding","type":"narrow"},{"name":"interferon-kappa binding","type":"narrow"},{"name":"interferon-omega binding","type":"narrow"},{"name":"interferon-tau binding","type":"narrow"},{"name":"interferon-zeta binding","type":"narrow"},{"name":"type I IFN binding","type":"exact"}],"termid":"GO:0019962"}


id: GO:0047432
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,2-dialkylglycine + H+ + pyruvate = L-alanine + CO2 + dialkyl ketone.","definition_xrefs":["RHEA:16073","EC:4.1.1.64"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"2,2-dialkylglycine decarboxylase (pyruvate) activity","secondary_identifiers":["MetaCyc:4.1.1.64-RXN","KEGG_REACTION:R03854"],"synonyms":[{"name":"2,2-dialkyl-2-amino acid-pyruvate aminotransferase activity","type":"related"},{"name":"2,2-dialkylglycine carboxy-lyase (amino-transferring)","type":"related"},{"name":"2,2-dialkylglycine carboxy-lyase (amino-transferring; L-alanine-forming)","type":"related"},{"name":"L-alanine-alpha-ketobutyrate aminotransferase activity","type":"related"},{"name":"alpha-dialkyl amino acid transaminase activity","type":"related"},{"name":"dialkyl amino acid (pyruvate) decarboxylase activity","type":"related"},{"name":"dialkylamino-acid decarboxylase (pyruvate)","type":"related"}],"termid":"GO:0047432"}


id: MONDO:0014825
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"partial deletion of the short arm of chromosome 11","termid":"MONDO:0016893"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 11p13 deletion syndrome, distal","secondary_identifiers":["MEDGEN:935014","OMIM:616902","UMLS:C4311047"],"termid":"MONDO:0014825","xrefs":{"Monarch":{"xref_id":"0014825"}}}


id: GO:0035194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A posttranscriptional gene silencing pathway in which regulatory RNAs elicit silencing of specific target genes, either by mRNA destabilization or inhibition of translation.","definition_xrefs":["PMID:15020054","PMID:33184244","PMID:18771919","PMID:11201747","GOC:ems","PMID:11713190","PMID:15066275","PMID:32885814"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-transcriptional gene silencing","termid":"GO:0016441"},{"relation_name":"is_a","term_name":"regulatory ncRNA-mediated gene silencing","termid":"GO:0031047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulatory ncRNA-mediated post-transcriptional gene silencing","secondary_identifiers":["Reactome:R-HSA-426496","Wikipedia:RNA_interference","GO:0016246"],"synonyms":[{"name":"PTGS","type":"broad"},{"name":"RNA interference","type":"broad"},{"name":"RNA-dependent post-transcriptional gene silencing","type":"exact"},{"name":"RNA-mediated post-transcriptional gene silencing","type":"exact"},{"name":"RNA-mediated posttranscriptional gene silencing","type":"exact"},{"name":"RNAi","type":"broad"},{"name":"cosuppression","type":"related"},{"name":"ncRNA-mediated post-transcriptional gene silencing","type":"exact"},{"name":"post-transcriptional gene silencing by RNA","type":"related"},{"name":"posttranscriptional gene silencing by RNA","type":"exact"},{"name":"quelling","type":"related"}],"termid":"GO:0035194"}


id: MONDO:0003598
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Disease involving the median nerve, from its origin at the brachial plexus to its termination in the hand. Clinical features include weakness of wrist and finger flexion, forearm pronation, thenar abduction, and loss of sensation over the lateral palm, first three fingers, and radial half of the ring finger. Common sites of injury include the elbow, where the nerve passes through the two heads of the pronator teres muscle (pronator syndrome) and in the carpal tunnel (carpal tunnel syndrome).","definition_xrefs":["MESH:D020423"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"neuritis of upper limb","termid":"MONDO:0003607"},{"relation_name":"is_a","term_name":"brachial plexus neuropathy","termid":"MONDO:0006683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"median nerve neuropathy","secondary_identifiers":["UMLS:C0751922","MEDGEN:199766","DOID:571","SCTID:397828008","ICD9:354.1"],"synonyms":[{"name":"median nerve palsy","type":"related"},{"name":"median nerve peripheral neuropathy","type":"exact"},{"name":"median neuropathy","type":"exact"},{"name":"peripheral neuropathy of median nerve","type":"exact"}],"termid":"MONDO:0003598","xrefs":{"Monarch":{"xref_id":"0003598"}}}


id: GO:0098542
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Reactions triggered in response to the presence of another organism that act to protect the cell or organism from damage caused by that organism.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"defense response","termid":"GO:0006952"},{"relation_name":"is_a","term_name":"response to other organism","termid":"GO:0051707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"defense response to other organism","secondary_identifiers":["GO:0009814"],"synonyms":[{"name":"defence response incompatible interaction","type":"narrow"},{"name":"defence response to pathogen, incompatible interaction","type":"narrow"},{"name":"defense response, incompatible interaction","type":"narrow"},{"name":"resistance response to pathogen","type":"narrow"}],"termid":"GO:0098542"}


id: PBO:0090401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiosulfate sulfurtransferase, URM1 activating enzyme E1-type Uba42","termid":"PBO:0090401"}


id: PBO:0071580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35 pseudogene 9","termid":"PBO:0071580"}


id: PBO:0116315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F1-FO ATP synthase beta subunit (central stalk) Atp2","termid":"PBO:0116315"}


id: MONDO:0001022
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"amblyopia","termid":"MONDO:0001020"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"disuse amblyopia","secondary_identifiers":["SCTID:193638002","ICD9:368.02","DOID:10378","ICD10CM:H53.01","UMLS:C0152189","MEDGEN:508918"],"synonyms":[{"name":"deprivation amblyopia","type":"exact"}],"termid":"MONDO:0001022","xrefs":{"Monarch":{"xref_id":"0001022"}}}


id: PBO:0070147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 61 pseudogene","termid":"PBO:0070147"}


id: PBO:0001056
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.1.50","termid":"PBO:0001056"}


id: PBO:0116804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 109D (gene/pseudogene)","termid":"PBO:0116804"}


id: PR:Q96VG3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC683.03 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q96VG3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C683.03 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC683.03","synonyms":[{"name":"Spom972h-SPAC683.03","type":"exact"}],"termid":"PR:Q96VG3"}


id: GO:0051646
data:
  {"annotated_genes":["SJAG_00031","SJAG_03416","SJAG_01741","SJAG_00655","SJAG_04003","SJAG_00368","SJAG_02848","SJAG_02509"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74188],"is_not":false,"summary":null,"term":"GO:0051646"},{"annotations":[71685,108423],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051654"},{"annotations":[104587],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034643"},{"annotations":[78170,109048,109263,78026],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048312"},{"annotations":[113986],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048311"},{"annotations":[104590],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000001"}]},"cv_name":"biological_process","definition":"Any process in which a mitochondrion or mitochondria are transported to, and/or maintained in, a specific location within the cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle localization","termid":"GO:0051640"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00031":null,"SJAG_00368":null,"SJAG_00655":null,"SJAG_01741":null,"SJAG_02509":null,"SJAG_02848":null,"SJAG_03416":null,"SJAG_04003":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"mitochondrion localization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"establishment and maintenance of mitochondria localization","type":"exact"},{"name":"establishment and maintenance of mitochondrion localization","type":"exact"},{"name":"localization of mitochondria","type":"exact"},{"name":"localization of mitochondrion","type":"exact"},{"name":"mitochondria localization","type":"exact"},{"name":"mitochondrial localization","type":"exact"},{"name":"mitochondrion localisation","type":"exact"}],"termid":"GO:0051646","terms_by_termid":{"GO:0000001":null,"GO:0034643":null,"GO:0048311":null,"GO:0048312":null,"GO:0051646":null,"GO:0051654":null}}


id: GO:1903921
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein processing in phagocytic vesicle.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:als","PMID:23325791"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein processing","termid":"GO:0070613"},{"relation_name":"regulates","term_name":"protein processing in phagocytic vesicle","termid":"GO:1900756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0051604"],"is_obsolete":false,"name":"regulation of protein processing in phagocytic vesicle","synonyms":[{"name":"regulation of peptidolysis during protein maturation in phagocytic vesicle","type":"related"},{"name":"regulation of peptidolysis during protein maturation in phagosome","type":"related"},{"name":"regulation of protein maturation by peptide bond cleavage in phagocytic vesicle","type":"exact"},{"name":"regulation of protein maturation by peptide bond cleavage in phagosome","type":"exact"},{"name":"regulation of protein maturation by peptide bond hydrolysis in phagocytic vesicle","type":"exact"},{"name":"regulation of protein maturation by peptide bond hydrolysis in phagosome","type":"exact"},{"name":"regulation of protein maturation by proteolysis in phagocytic vesicle","type":"related"},{"name":"regulation of protein maturation by proteolysis in phagosome","type":"related"},{"name":"regulation of protein processing in phagosome","type":"exact"}],"termid":"GO:1903921"}


id: PBO:0087847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Topoisomerase II; relieves torsional strain in DNA by cleaving and re-sealing phosphodiester backbone of both positively and negatively supercoiled DNA; cleaves complementary strands; localizes to axial cores in meiosis; required for replication slow zone (RSZ) breakage following Mec1p inactivation; human homolog TOP2A implicated in cancers, and can complement yeast null mutant","termid":"PBO:0087847"}


id: PBO:0063496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDZ and LIM domain 4","termid":"PBO:0063496"}


id: PBO:0001274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin Spn4","termid":"PBO:0001274"}


id: PR:Q09908
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- phf2 gene.","definition_xrefs":["UniProtKB:Q09908","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWM histone demethylase complex subunit phf2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC30D11.08c","synonyms":[{"name":"PHD finger domain-containing protein phf2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-phf2","type":"exact"}],"termid":"PR:Q09908"}


id: GO:0004219
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: pyroglutamyl-peptide + H2O = pyroglutamate + peptide.","definition_xrefs":["GOC:curator"],"gene_count":0,"genotype_count":0,"name":"obsolete pyroglutamyl-peptidase I activity (obsolete GO:0004219)","synonyms":[{"name":"pyroglutamyl-peptidase I activity","type":"exact"}],"termid":"GO:0004219"}


id: GO:0110036
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to the C2 domain of a protein, a protein structural domain involved in targeting proteins to cell membranes.","definition_xrefs":["PMID:24882364","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"C2 domain binding","termid":"GO:0110036"}


id: MONDO:0002322
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acquired degenerative dilation or expansion (ectasia) of normal blood vessels, often associated with aging. They are isolated, tortuous, thin-walled vessels and sources of bleeding. They occur most often in mucosal capillaries of the gastrointestinal tract leading to gastrointestinal hemorrhage and anemia.","definition_xrefs":["MESH:D016888"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular disorder","termid":"MONDO:0005385"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angiodysplasia","secondary_identifiers":["UMLS:C0085411","SCTID:90858003","MEDGEN:88403","DOID:2494","ICD9:537.83"],"synonyms":[{"name":"angiodysplasia of stomach and duodenum with haemorrhage","type":"narrow"},{"name":"angiodysplasia of stomach and duodenum with hemorrhage","type":"narrow"}],"termid":"MONDO:0002322","xrefs":{"Monarch":{"xref_id":"0002322"}}}


id: FYPO:0006356
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which chromatin remodeling, i.e. any dynamic structural change to chromatin, is abnormal.","definition_xrefs":["GO:0006338","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization","termid":"FYPO:0000642"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000641"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000641"],"is_obsolete":false,"name":"abnormal chromatin remodeling","synonyms":[{"name":"abnormal chromatin modeling","type":"exact"},{"name":"abnormal chromatin remodelling","type":"exact"}],"termid":"FYPO:0006356"}


id: GO:0019203
data:
  {"annotated_genes":["SJAG_02713","SJAG_05314","SJAG_00685","SJAG_01646","SJAG_01862","SJAG_00039"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77880,74823,80559,76755],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004331"},{"annotations":[75687,81643],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004805"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: carbohydrate phosphate + H2O = carbohydrate + phosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00039":null,"SJAG_00685":null,"SJAG_01646":null,"SJAG_01862":null,"SJAG_02713":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787","GO:0016788"],"is_obsolete":false,"name":"carbohydrate phosphatase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-3791349","Reactome:R-HSA-3781011","Reactome:R-HSA-3781018"],"termid":"GO:0019203","terms_by_termid":{"GO:0004331":null,"GO:0004805":null}}


id: GO:1903805
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-valine from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["PMID:23895341","GO_REF:0000075","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid import across plasma membrane","termid":"GO:0089718"},{"relation_name":"is_a","term_name":"L-valine transmembrane transport","termid":"GO:1903785"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"L-valine import across plasma membrane","secondary_identifiers":["GO:0090468"],"synonyms":[{"name":"L-valine import into cell","type":"exact"},{"name":"valine import","type":"narrow"}],"termid":"GO:1903805"}


id: PBO:0042464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle associated 4 pseudogene 1","termid":"PBO:0042464"}


id: GO:0140857
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: histone H3-threonine (position 45) + ATP = histone H3-phosphothreonine (position 45) + ADP. This reaction is the addition of a phosphate group to the threonine residue at position 45 of histone H3.","definition_xrefs":["PMID:24820035"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"},{"relation_name":"is_a","term_name":"histone H3 kinase activity","termid":"GO:0140996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0004672","GO:0016740","GO:0003824","GO:0140096","GO:0016301"],"is_obsolete":false,"name":"histone H3T45 kinase activity","synonyms":[{"name":"histone kinase activity (H3-T45 specific)","type":"exact"},{"name":"histone threonine kinase activity (H3-T45 specific)","type":"exact"},{"name":"histone-threonine kinase activity (H3-T45 specific)","type":"exact"}],"termid":"GO:0140857"}


id: PBO:0041769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calpain 9","termid":"PBO:0041769"}


id: MONDO:0007043
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pfeiffer syndrome (PS) is a common form of acrocephalosyndactyly, a group of inherited congenital malformation disorders, characterized by variable degrees of bicoronal craniosynostosis, variable hand and foot malformations and various other associated manifestations.","definition_xrefs":["Orphanet:710"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete neuro-ophthalmological disease (obsolete MONDO:0015368)","termid":"MONDO:0015368"},{"relation_name":"is_a","term_name":"acrocephalopolysyndactyly","termid":"MONDO:0000078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Pfeiffer syndrome","secondary_identifiers":["DOID:14705","NANDO:1200668","icd11.foundation:1075159878","NANDO:2200976","MESH:D000168","UMLS:C0220658","MEDGEN:67390","GARD:7380","NCIT:C99100","NORD:1572","OMIM:101600","SCTID:70410008"],"synonyms":[{"name":"ACS 5","type":"related"},{"name":"ACS5","type":"exact"},{"name":"Noack syndrome","type":"related"},{"name":"Pfeiffer syndrome","type":"exact"},{"name":"Pfeiffer type acrocephalosyndactyly","type":"related"},{"name":"acrocephalosyndactylia type V","type":"exact"},{"name":"acrocephalosyndactyly type 5","type":"exact"},{"name":"acrocephalosyndactyly type V","type":"exact"},{"name":"acrocephalosyndactyly, type 5","type":"related"},{"name":"craniofacial-skeletal-Dermatologic dysplasia","type":"related"},{"name":"type V Acrocephalosyndactyly","type":"exact"}],"termid":"MONDO:0007043","xrefs":{"Monarch":{"xref_id":"0007043"}}}


id: RO:0002435
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"interacts_with","termid":"RO:0002434"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"genetically_interacts_with","termid":"RO:0002435"}


id: PBO:0077825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TP53 target 3D","termid":"PBO:0077825"}


id: PBO:0051155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-35 (non-functional)","termid":"PBO:0051155"}


id: GO:0061523
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular process that results in the breakdown of a cilium.","definition_xrefs":["PMID:27350441","GOC:dph","GOC:cilia","PMID:17604723"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cilium organization","termid":"GO:0044782"},{"relation_name":"is_a","term_name":"organelle disassembly","termid":"GO:1903008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cilium disassembly","synonyms":[{"name":"cilium resorption","type":"exact"}],"termid":"GO:0061523"}


id: MONDO:0008279
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete familial adenomatous polyposis type 1 (obsolete MONDO:0008279)","termid":"MONDO:0008279","xrefs":{"Monarch":{"xref_id":"0008279"}}}


id: PBO:0060083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 30","termid":"PBO:0060083"}


id: MONDO:0976135
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"visceral heterotaxy","termid":"MONDO:0018677"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterotaxy, visceral, 14, autosomal","secondary_identifiers":["OMIM:621080"],"termid":"MONDO:0976135","xrefs":{"Monarch":{"xref_id":"0976135"}}}


id: MONDO:0003795
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from the ovary and is characterized by the presence of small malignant cells. It includes small cell carcinoma, hypercalcemic type and small cell carcinoma, pulmonary type.","definition_xrefs":["NCIT:C27390"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small cell carcinoma","termid":"MONDO:0000402"},{"relation_name":"is_a","term_name":"ovarian neuroendocrine neoplasm","termid":"MONDO:0002481"},{"relation_name":"is_a","term_name":"ovarian carcinoma","termid":"MONDO:0005140"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"ovarian small cell carcinoma","secondary_identifiers":["MEDGEN:389177","ONCOTREE:SCCO","Orphanet:370396","EFO:1000431","UMLS:C2212006","GARD:10411","DOID:6179"],"synonyms":[{"name":"SCCO","type":"exact"},{"name":"ovarian small cell NEC","type":"exact"},{"name":"ovarian small cell cancer","type":"exact"},{"name":"ovarian small cell carcinoma","type":"exact"},{"name":"ovarian small cell neuroendocrine carcinoma","type":"exact"},{"name":"ovary small cell carcinoma","type":"exact"},{"name":"small cell carcinoma of ovary","type":"exact"},{"name":"small cell carcinoma of the ovary","type":"exact"},{"name":"small cell ovarian carcinoma","type":"exact"}],"termid":"MONDO:0003795","xrefs":{"Monarch":{"xref_id":"0003795"}}}


id: MONDO:0030500
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Loeys-Dietz syndrome","termid":"MONDO:0018954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"Loeys-Dietz syndrome 6","secondary_identifiers":["OMIM:619656","UMLS:C5562041","MEDGEN:1794251","DOID:0060964"],"synonyms":[{"name":"LDS6","type":"exact"}],"termid":"MONDO:0030500","xrefs":{"Monarch":{"xref_id":"0030500"}}}


id: PBO:0045474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"developmentally regulated GTP binding protein 2","termid":"PBO:0045474"}


id: GO:1905158
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of Factor XII activation.","definition_xrefs":["GOC:TermGenie","PMID:617517","GO_REF:0000058"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of Factor XII activation (obsolete GO:1905158)","synonyms":[{"name":"regulation of Hageman factor activation","type":"exact"}],"termid":"GO:1905158"}


id: PBO:0080836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Y-box binding protein 1","termid":"PBO:0080836"}


id: GO:0098569
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side of the mycolate outer membrane that faces the cell wall peptidoglycan. It is rich in long-chain mycolic acids (hydroxylated branched-chain fatty acids) that are covalently linked to the cell wall peptidoglycan via an arabinogalactan network.","definition_xrefs":["PMID:18316738","PMID:18567661","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"side of membrane","termid":"GO:0098552"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"internal side of mycolate outer membrane","termid":"GO:0098569"}


id: FYPO:0003653
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription elongation from an RNA polymerase III promoter occurs to a normal (i.e. indistinguishable from wild type) extent.","definition_xrefs":["GO:0006385","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal transcription during vegetative growth","termid":"FYPO:0001855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000294","FYPO:0001312","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal transcription elongation from RNA polymerase III promoter during vegetative growth","synonyms":[{"name":"normal transcription elongation from RNA polymerase III promoter during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003653"}


id: PBO:0117377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosome large subunit assembly protein Mam33","termid":"PBO:0117377"}


id: CHEBI:67229
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conduritol B epoxide","termid":"CHEBI:67229"}


id: PBO:0087270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ser/Thr protein kinase; regulates the organization and function of the actin cytoskeleton; inhibits clathrin-mediated endocytosis; phosphorylates the Pan1p and Sla1p subunits of the Pan1p-Sla1p-End3p complex, resulting in inhibition of complex formation; inhibits Scd5p through phosphorylation; phosphorylates Pan1p-interacting proteins, Ent1/2 and Yap1801/2; negatively regulated through autophosphorylation; functional overlap with ARK1","termid":"PBO:0087270"}


id: MONDO:0011899
data:
  {"annotated_genes":["SJAG_03126","SJAG_02536"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87296,87295],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054588"}]},"cv_name":"mondo","definition":"Noonan-like syndrome with loose anagen hair (NS/LAH) is a Noonan-related syndrome, characterized by facial anomalies suggestive of Noonan syndrome ; a distinctive hair anomaly described as loose anagen hair syndrome ; frequent congenital heart defects; distinctive skin features with darkly pigmented skin, keratosis pilaris, eczema or occasional neonatal ichtyosis ; and short stature, often associated with a GH deficiency and psychomotor delays.","definition_xrefs":["Orphanet:2701"],"direct_ancestors":[{"relation_name":"is_a","term_name":"loose anagen syndrome","termid":"MONDO:0010908"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"},{"relation_name":"is_a","term_name":"Noonan syndrome and Noonan-related syndrome","termid":"MONDO:0020297"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02536":null,"SJAG_03126":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"Noonan syndrome-like disorder with loose anagen hair","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:334697","SCTID:723444009","GARD:10719","UMLS:C1843181","DOID:0080691","MESH:C564342","NCIT:C178129","OMIMPS:607721"],"synonyms":[{"name":"NS/LAH","type":"exact"},{"name":"NSLH","type":"related"},{"name":"NSLH1","type":"related"},{"name":"Noonan syndrome-like disorder with loose anagen hair","type":"exact"},{"name":"Noonan syndrome-like disorder with loose anagen hair 1","type":"related"},{"name":"Noonan-like syndrome with loose anagen hair","type":"related"},{"name":"Tosti syndrome","type":"exact"}],"termid":"MONDO:0011899","terms_by_termid":{"MONDO:0054588":null},"xrefs":{"Monarch":{"xref_id":"0011899"}}}


id: PBO:0027659
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_kinase_activity_during_cellular_response_to_hydroxyurea","termid":"PBO:0027659"}


id: PBO:0090770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF34 family protein","termid":"PBO:0090770"}


id: MONDO:0019593
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete 46,XX disorder of sex development induced by fetal androgens excess (obsolete MONDO:0019593)","secondary_identifiers":["Orphanet:90776"],"synonyms":[{"name":"46,XX DSD induced by fetal androgens excess","type":"exact"},{"name":"46,XX DSD induced by foetal androgens excess","type":"exact"}],"termid":"MONDO:0019593","xrefs":{"Monarch":{"xref_id":"0019593"}}}


id: PBO:0075971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"StAR related lipid transfer domain containing 13","termid":"PBO:0075971"}


id: PBO:0041200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BUD31 homolog","termid":"PBO:0041200"}


id: PBO:0027405
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_sulfite_reductase_activity","termid":"PBO:0027405"}


id: PBO:0077428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 165","termid":"PBO:0077428"}


id: PATO:0000197
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000197 transfer_arousal (obsolete PATO:0000197)","termid":"PATO:0000197"}


id: PBO:0067343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 440, pseudogene","termid":"PBO:0067343"}


id: PR:O94643
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mis17 gene.","definition_xrefs":["UniProtKB:O94643","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein mis17 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21.01","synonyms":[{"name":"Spom972h-mis17","type":"exact"},{"name":"sim4 complex subunit mis17 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94643"}


id: FYPO:0004375
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to Ku-0063794. Cells stop growing (and may die) at a concentration of Ku-0063794 that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0005447","FYPO:0000139","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to Ku-0063794","synonyms":[{"name":"hypersensitive to Ku-0063794","type":"exact"},{"name":"sensitive to KU 0063794","type":"exact"},{"name":"sensitive to Ku-0063794 during mitotic cell cycle","type":"related"},{"name":"sensitive to Ku-0063794 during vegetative growth","type":"exact"}],"termid":"FYPO:0004375"}


id: PBO:0109463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR9-2 host gene","termid":"PBO:0109463"}


id: PBO:0058256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4634","termid":"PBO:0058256"}


id: GO:0031306
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the mitochondrial outer membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of mitochondrial outer membrane (obsolete GO:0031306)","synonyms":[{"name":"intrinsic to mitochondrial outer membrane","type":"narrow"}],"termid":"GO:0031306"}


id: PBO:0047487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferredoxin 2","termid":"PBO:0047487"}


id: GO:1905137
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of viral DNA genome packaging via site-specific sequence recognition.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:24711378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of viral life cycle","termid":"GO:1903900"},{"relation_name":"regulates","term_name":"viral DNA genome packaging via site-specific sequence recognition","termid":"GO:0098035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of viral DNA genome packaging via site-specific sequence recognition","termid":"GO:1905137"}


id: PR:P0CT38
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- Tf2-5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P0CT38"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transposon Tf2-5 polyprotein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB15E9.03c","synonyms":[{"name":"Spom972h-Tf2-5","type":"exact"},{"name":"retrotransposable element Tf2 155 kDa protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P0CT38"}


id: MONDO:0003784
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A in situ carcinoma that involves the nasal cavity.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nasal cavity carcinoma","termid":"MONDO:0003212"},{"relation_name":"is_a","term_name":"in situ carcinoma","termid":"MONDO:0004647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"nasal cavity carcinoma in situ","secondary_identifiers":["DOID:6148","SCTID:92663007","MEDGEN:138077","ICD9:231.8","NCIT:C4589","UMLS:C0347095"],"synonyms":[{"name":"carcinoma in situ of nasal cavities","type":"exact"},{"name":"carcinoma in situ of nasal cavity","type":"exact"},{"name":"carcinoma in situ of the nasal cavity","type":"exact"},{"name":"nasal cavity carcinoma in situ","type":"exact"},{"name":"nasal cavity in situ carcinoma","type":"exact"},{"name":"stage 0 carcinoma of nasal cavity","type":"exact"},{"name":"stage 0 carcinoma of the nasal cavity","type":"exact"},{"name":"stage 0 nasal cavity cancer","type":"exact"},{"name":"stage 0 nasal cavity cancer aJCC v6, v7, and v8","type":"exact"},{"name":"stage 0 nasal cavity carcinoma","type":"exact"},{"name":"stage 0 nasal cavity carcinoma aJCC v6","type":"exact"},{"name":"stage 0 nasal cavity carcinoma aJCC v7","type":"exact"},{"name":"stage 0 nasal cavity carcinoma aJCC v8","type":"exact"}],"termid":"MONDO:0003784","xrefs":{"Monarch":{"xref_id":"0003784"}}}


id: MONDO:0015634
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A osteopoikilosis (disease) that is not part of a larger syndrome.","definition_xrefs":["MONDO:patterns/isolated"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteopoikilosis","termid":"MONDO:0001414"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isolated osteopoikilosis","secondary_identifiers":["GARD:17027","UMLS:C1833699","Orphanet:166119","MEDGEN:318940"],"synonyms":[{"name":"isolated osteopoikilosis (disease)","type":"exact"},{"name":"nonsyndromic osteopoikilosis (disease)","type":"exact"}],"termid":"MONDO:0015634","xrefs":{"Monarch":{"xref_id":"0015634"}}}


id: PBO:0056573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAPK regulated corepressor interacting protein 2","termid":"PBO:0056573"}


id: PBO:0027874
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_during_cellular_response_to_ionizing_radiation","termid":"PBO:0027874"}


id: PATO:0000388
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000388 intensity value (obsolete PATO:0000388)","termid":"PATO:0000388"}


id: PBO:0017862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferrous iron/manganese transmembrane transporter Pcl1","termid":"PBO:0017862"}


id: PBO:0069155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 407, pseudogene","termid":"PBO:0069155"}


id: GO:0019155
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-3-(imidazol-5-yl)lactate + NADP+ = 3-(imidazol-5-yl)pyruvate + NADPH + H+.","definition_xrefs":["EC:1.1.1.111"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"3-(imidazol-5-yl)lactate dehydrogenase activity","secondary_identifiers":["MetaCyc:IMILACTDEHYDROG-RXN"],"synonyms":[{"name":"(S)-3-(imidazol-5-yl)lactate:NAD(P)+ oxidoreductase activity","type":"related"},{"name":"imidazol-5-yl lactate dehydrogenase activity","type":"related"}],"termid":"GO:0019155"}


id: MONDO:0001818
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Neuralgic syndromes which feature chronic or recurrent facial pain as the primary manifestation of disease. Disorders of the trigeminal and facial nerves are frequently associated with these conditions.","definition_xrefs":["MESH:D005156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"facial nerve disorder","termid":"MONDO:0002098"},{"relation_name":"is_a","term_name":"cranial neuralgia","termid":"MONDO:0016374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"facial neuralgia","secondary_identifiers":["EFO:0009380","ICD9:351.8","DOID:13865","MEDGEN:5099","SCTID:4151000119102","UMLS:C0015467"],"synonyms":[{"name":"facial nerve neuralgia","type":"exact"},{"name":"neuralgia of facial nerve","type":"exact"}],"termid":"MONDO:0001818","xrefs":{"Monarch":{"xref_id":"0001818"}}}


id: PBO:0040185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ASPSCR1 tether for SLC2A4, UBX domain containing","termid":"PBO:0040185"}


id: PBO:0005662
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulated by Thi1","termid":"PBO:0005662"}


id: GO:0042120
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving alginic acid, a hydrophilic polysaccharide occurring in, for example, the cell walls of brown algae (brown seaweeds).","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide metabolic process","termid":"GO:0005976"},{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"alginic acid metabolic process","synonyms":[{"name":"alginate metabolic process","type":"exact"},{"name":"alginate metabolism","type":"exact"},{"name":"alginic acid metabolism","type":"exact"}],"termid":"GO:0042120"}


id: GO:0071492
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-A radiation stimulus. UV-A radiation (UV-A light) spans the wavelengths 315 to 400 nm.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to UV","termid":"GO:0034644"},{"relation_name":"is_a","term_name":"response to UV-A","termid":"GO:0070141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to UV-A","synonyms":[{"name":"cellular response to UV-A light stimulus","type":"exact"},{"name":"cellular response to UV-A radiation stimulus","type":"exact"},{"name":"cellular response to UVA light stimulus","type":"exact"},{"name":"cellular response to UVA radiation stimulus","type":"exact"}],"termid":"GO:0071492"}


id: MONDO:0017174
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Machado-Joseph disease type 1 is a rare, usually severe subtype of Machado-Joseph disease (SCA3/MJD) characterized by the presence of marked pyramidal and extrapyramidal signs.","definition_xrefs":["Orphanet:276238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Machado-Joseph disease","termid":"MONDO:0007182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0000426","MONDO:0005559"],"is_obsolete":false,"name":"Machado-Joseph disease type 1","secondary_identifiers":["GARD:21048","icd11.foundation:1094680019","SCTID:91953003","MEDGEN:155610","UMLS:C0751668"],"synonyms":[{"name":"SCA3, Joseph type","type":"exact"},{"name":"azorean disease, type i","type":"exact"},{"name":"spinocerebellar ataxia type 3, Joseph type","type":"exact"}],"termid":"MONDO:0017174","xrefs":{"Monarch":{"xref_id":"0017174"}}}


id: PBO:0077259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane p24 trafficking protein 9","termid":"PBO:0077259"}


id: FYPO:0006022
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the size, shape, or structure of the spindle pole body is abnormal during the first meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal spindle pole body morphology during meiotic cell cycle","termid":"FYPO:0006406"},{"relation_name":"output_of","term_name":"abnormal prospore-specific spindle pole body remodeling","termid":"FYPO:0003561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000121"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0000121","FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0000054","FYPO:0000002"],"is_obsolete":false,"name":"abnormal spindle pole body morphology during meiosis I","synonyms":[{"name":"abnormal SPB morphology during meiosis I","type":"exact"},{"name":"abnormal spindle pole body morphology during first meiotic nuclear division","type":"exact"},{"name":"abnormal spindle pole body structure during meiosis I","type":"narrow"}],"termid":"FYPO:0006022"}


id: GO:0002490
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class Ib protein complex following intracellular transport via a pathway not requiring TAP (transporter associated with antigen processing). The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family.","definition_xrefs":["GOC:add","PMID:15928678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway","termid":"GO:0002488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-independent","synonyms":[{"name":"TAP-independent antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway","type":"exact"},{"name":"TAP-independent endogenous peptide antigen processing and presentation via MHC class Ib via ER pathway","type":"exact"},{"name":"endogenous peptide antigen processing and presentation via MHC class Ib via ER pathway, TAP-independent","type":"exact"}],"termid":"GO:0002490"}


id: GO:0018463
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 6-hydroxyhexanoate + NAD+ = 6-oxohexanoate + H+ + NADH.","definition_xrefs":["RHEA:14225","EC:1.1.1.258"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"6-hydroxyhexanoate dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R05283","UM-BBD_reactionID:r0174","MetaCyc:6-HYDROXYHEXANOATE-OXIDATION-RXN"],"synonyms":[{"name":"6-hydroxyhexanoate:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0018463"}


id: PBO:0075272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 18 pseudogene 25","termid":"PBO:0075272"}


id: PBO:0076923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor CP2 like 1","termid":"PBO:0076923"}


id: GO:0061061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of a muscle structure over time, from its formation to its mature state. Muscle structures are contractile cells, tissues or organs that are found in multicellular organisms.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"muscle structure development","termid":"GO:0061061"}


id: CHEBI:17677
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTP","termid":"CHEBI:17677"}


id: GO:0051174
data:
  {"annotated_genes":["SJAG_02613","SJAG_02785","SJAG_00053","SJAG_02380","SJAG_03940","SJAG_03170","SJAG_01906","SJAG_04422","SJAG_05314","SJAG_00685","SJAG_01187"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92223,59784],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902647"},{"annotations":[77883,74826],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045820"},{"annotations":[117344,113227],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001211"},{"annotations":[119870],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905707"},{"annotations":[111578,114605],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071072"},{"annotations":[119397],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902648"},{"annotations":[91509],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905857"},{"annotations":[71755],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006110"},{"annotations":[77882],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043456"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of metabolic process","termid":"GO:0019222"},{"relation_name":"regulates","term_name":"phosphorus metabolic process","termid":"GO:0006793"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00053":null,"SJAG_00685":null,"SJAG_01187":null,"SJAG_01906":null,"SJAG_02380":null,"SJAG_02613":null,"SJAG_02785":null,"SJAG_03170":null,"SJAG_03940":null,"SJAG_04422":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of phosphorus metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"regulation of phosphorus metabolism","type":"exact"}],"termid":"GO:0051174","terms_by_termid":{"GO:0006110":null,"GO:0043456":null,"GO:0045820":null,"GO:0071072":null,"GO:1902647":null,"GO:1902648":null,"GO:1905707":null,"GO:1905857":null,"GO:2001211":null}}


id: PBO:0072845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"suppressor APC domain containing 2","termid":"PBO:0072845"}


id: GO:0042166
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to acetylcholine, an acetic acid ester of the organic base choline that functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cation binding","termid":"GO:0043169"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"acetylcholine binding","termid":"GO:0042166"}


id: GO:0090393
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process aimed at the progression of a sepal giant cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell development","termid":"GO:0048468"},{"relation_name":"part_of","term_name":"sepal giant cell differentiation","termid":"GO:0090392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sepal giant cell development","synonyms":[{"name":"sepal giant cell formation","type":"related"}],"termid":"GO:0090393"}


id: GO:0032345
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving aldosterone.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of aldosterone metabolic process","termid":"GO:0032344"},{"relation_name":"is_a","term_name":"negative regulation of hormone metabolic process","termid":"GO:0032351"},{"relation_name":"is_a","term_name":"negative regulation of steroid metabolic process","termid":"GO:0045939"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"negatively_regulates","term_name":"aldosterone metabolic process","termid":"GO:0032341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"negative regulation of aldosterone metabolic process","synonyms":[{"name":"down regulation of aldosterone metabolic process","type":"exact"},{"name":"down-regulation of aldosterone metabolic process","type":"exact"},{"name":"downregulation of aldosterone metabolic process","type":"exact"},{"name":"inhibition of aldosterone metabolic process","type":"narrow"},{"name":"negative regulation of aldosterone metabolism","type":"exact"}],"termid":"GO:0032345"}


id: PBO:0085369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphotyrosine-specific phosphatase; major role in osmolarity sensing through dephosphorylation of the Hog1p MAPK with a minor role by Ptp3p; inactivates and regulates Hog1p localization; major role in the cell wall integrity pathway through dephosphorylation of MAPK Slt2p with a minor role by Ptp3p; minor role with Msg5p in the pheromone adaptive response through dephosphorylation of MAPK Fus3p with major role by Ptp3p; co-regulates the calcium signaling pathway with Msg5p; nuclear localized","termid":"PBO:0085369"}


id: GO:1990442
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced in response to nitrosative stress; a state often resulting from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions.","definition_xrefs":["GOC:PARL","GOC:bf","PMID:23985028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to nitrosative stress","termid":"GO:0071500"},{"relation_name":"is_a","term_name":"intrinsic apoptotic signaling pathway","termid":"GO:0097193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"intrinsic apoptotic signaling pathway in response to nitrosative stress","synonyms":[{"name":"nitrosative stress-induced apoptosis","type":"related"},{"name":"nitrosative stress-induced intrinsic apoptotic signaling pathway","type":"exact"}],"termid":"GO:1990442"}


id: MONDO:0014659
data:
  {"annotated_genes":["SJAG_04956"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86911],"is_not":false,"summary":null,"term":"MONDO:0014659"}]},"cv_name":"mondo","definition":"Any infantile liver failure in which the cause of the disease is a mutation in the NBAS gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"infantile liver failure","termid":"MONDO:0000023"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04956":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"infantile liver failure syndrome 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:616483","GARD:13113","NCIT:C158135","UMLS:C3809651","MEDGEN:815981"],"synonyms":[{"name":"ILFS2","type":"exact"},{"name":"NBAS infantile liver failure","type":"exact"},{"name":"infantile liver failure caused by mutation in NBAS","type":"exact"},{"name":"infantile liver failure syndrome 2","type":"exact"},{"name":"infantile liver failure syndrome type 2","type":"exact"}],"termid":"MONDO:0014659","terms_by_termid":{"MONDO:0014659":null},"xrefs":{"Monarch":{"xref_id":"0014659"}}}


id: PBO:0049269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"germ cell associated 1","termid":"PBO:0049269"}


id: PBO:0004122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Mis3","termid":"PBO:0004122"}


id: MONDO:0012254
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Multiple epiphyseal dysplasia, with miniepiphyses is a rare primary bone dysplasia disorder characterized by strikingly small secondary ossification centers (mini-epiphyses) in all or only some joints, resulting in severe bone dysplasia of the proximal femoral heads. Short stature, increased lumbar lordosis, genua vara and generalized joint laxity have also been reported.","definition_xrefs":["Orphanet:166032"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple epiphyseal dysplasia","termid":"MONDO:0016648"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"multiple epiphyseal dysplasia, with miniepiphyses","secondary_identifiers":["ICD10CM:Q77.3","OMIM:609325","GARD:17016","MESH:C563735","MEDGEN:332176","UMLS:C1836307"],"synonyms":[{"name":"epiphyseal dysplasia, multiple, with miniepiphyses","type":"related"}],"termid":"MONDO:0012254","xrefs":{"Monarch":{"xref_id":"0012254"}}}


id: GO:0140479
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A biosynthetic process that results in the formation of ergothioneine from histidine via a set of steps including the hercynylcysteine sulfoxide synthase reaction, which converts N-alpha,N-alpha,N-alpha-trimethyl-L-histidine directly to hercynylcysteine sulfoxide.","definition_xrefs":["PMID:22209968","PMID:24828577"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ergothioneine biosynthetic process","termid":"GO:0052699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"ergothioneine biosynthesis from histidine via hercynylcysteine sulfoxide synthase","termid":"GO:0140479"}


id: GO:0075304
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of basidiospore formation, a process in which a sexually produced fungal spore is formed on a basidium in the fungi basidiomycetes.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of sexual sporulation resulting in formation of a cellular spore","termid":"GO:0043942"},{"relation_name":"is_a","term_name":"regulation of basidiospore formation","termid":"GO:0075302"},{"relation_name":"negatively_regulates","term_name":"basidiospore formation","termid":"GO:0034295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"negative regulation of basidiospore formation","termid":"GO:0075304"}


id: MONDO:0700014
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chromosomal disorder in which chromosome 7 is affected.","definition_xrefs":["MONDO:patterns/chromosome_type"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal anomaly","termid":"MONDO:0020049"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 7 disorder","termid":"MONDO:0700014","xrefs":{"Monarch":{"xref_id":"0700014"}}}


id: MONDO:0017274
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete autosomal ichthyosis syndrome with other associated signs (obsolete MONDO:0017274)","termid":"MONDO:0017274","xrefs":{"Monarch":{"xref_id":"0017274"}}}


id: PBO:0075517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spindle apparatus coiled-coil protein 1","termid":"PBO:0075517"}


id: GO:0071258
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to gravity","termid":"GO:0009629"},{"relation_name":"is_a","term_name":"cellular response to abiotic stimulus","termid":"GO:0071214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to gravity","synonyms":[{"name":"cellular response to gravitational stimulus","type":"exact"}],"termid":"GO:0071258"}


id: GO:0051139
data:
  {"annotated_genes":["SJAG_04616","SJAG_04028","SJAG_04698","SJAG_01541","SJAG_04096"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[80157,71857,93016],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015369"},{"annotations":[93017],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010486"},{"annotations":[81795],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015386"},{"annotations":[81794,79844],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015385"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: metal ion(in) + H+(out) = metal ion(out) + H+(in).","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton transmembrane transporter activity","termid":"GO:0015078"},{"relation_name":"is_a","term_name":"metal cation:monoatomic cation antiporter activity","termid":"GO:0140828"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01541":null,"SJAG_04028":null,"SJAG_04096":null,"SJAG_04616":null,"SJAG_04698":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"metal cation:proton antiporter activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-435171"],"synonyms":[{"name":"metal ion:hydrogen antiporter activity","type":"exact"},{"name":"metal ion:proton antiporter activity","type":"exact"}],"termid":"GO:0051139","terms_by_termid":{"GO:0010486":null,"GO:0015369":null,"GO:0015385":null,"GO:0015386":null}}


id: PBO:0042242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine receptor 5","termid":"PBO:0042242"}


id: PBO:0058339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4713","termid":"PBO:0058339"}


id: MONDO:0015930
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete respiratory malformation (obsolete MONDO:0015930)","secondary_identifiers":["Orphanet:182111"],"termid":"MONDO:0015930","xrefs":{"Monarch":{"xref_id":"0015930"}}}


id: PBO:0005234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein Scw1","termid":"PBO:0005234"}


id: PBO:0065773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutaminyl-peptide cyclotransferase","termid":"PBO:0065773"}


id: PBO:0087615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the condensin complex; required for establishment and maintenance of chromosome condensation, chromosome segregation and chromatin binding by the complex; required for tRNA genes clustering at the nucleolus; required for replication slow zone breakage following Mec1p inactivation; transcription is cell cycle regulated, peaking in mitosis and declining in G1; protein is constitutively degraded by the proteasome; rate limiting for condensin recruitment to chromatin","termid":"PBO:0087615"}


id: PBO:0082097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"73 kDa subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; relocates to the cytosol under hypoxic conditions; deletion mutants are temperature-sensitive; SNF12 has a paralog, RSC6, that arose from the whole genome duplication","termid":"PBO:0082097"}


id: GO:0035349
data:
  {"annotated_genes":["SJAG_03452"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72234],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990559"}]},"cv_name":"biological_process","definition":"The process in which coenzyme A is transported across a membrane. Coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, is an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coenzyme A transport","termid":"GO:0015880"},{"relation_name":"is_a","term_name":"purine-containing compound transmembrane transport","termid":"GO:0072530"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03452":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085","GO:0051179"],"is_obsolete":false,"name":"coenzyme A transmembrane transport","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"coenzyme A membrane transport","type":"exact"}],"termid":"GO:0035349","terms_by_termid":{"GO:1990559":null}}


id: PBO:0077252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane p24 trafficking protein 3","termid":"PBO:0077252"}


id: PBO:0073321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine incorporator 4","termid":"PBO:0073321"}


id: GO:0032889
data:
  {"annotated_genes":["SJAG_03137","SJAG_03386","SJAG_03072","SJAG_02433"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99199],"is_not":false,"summary":null,"term":"GO:0032889"},{"annotations":[103277],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061192"},{"annotations":[99439,112115],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061191"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the fusion of two vacuole membranes to form a single vacuole.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vacuole organization","termid":"GO:0044088"},{"relation_name":"regulates","term_name":"vacuole fusion, non-autophagic","termid":"GO:0042144"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02433":null,"SJAG_03072":null,"SJAG_03137":null,"SJAG_03386":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of vacuole fusion, non-autophagic","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0032889","terms_by_termid":{"GO:0032889":null,"GO:0061191":null,"GO:0061192":null}}


id: PBO:0087264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine/threonine-rich protein involved in PKC1 signaling pathway; protein kinase C (PKC1) signaling pathway controls cell integrity; overproduction suppresses pkc1 mutations","termid":"PBO:0087264"}


id: GO:0006864
data:
  {"annotated_genes":["SJAG_00154"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80937],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990519"}]},"cv_name":"biological_process","definition":"The directed movement of a pyrimidine nucleotide, any compound consisting of a pyrimidine nucleoside esterified with (ortho)phosphate, into, out of or within a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide transport","termid":"GO:0006862"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00154":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"pyrimidine nucleotide transport","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0006864","terms_by_termid":{"GO:1990519":null}}


id: MONDO:1011415
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Amyloidosis that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic disease, non-human animal","termid":"MONDO:1011331"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amyloidosis, non-human animal","secondary_identifiers":["OMIA:000037"],"termid":"MONDO:1011415","xrefs":{"Monarch":{"xref_id":"1011415"}}}


id: MONDO:0013715
data:
  {"annotated_genes":["SJAG_03598"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87433],"is_not":false,"summary":null,"term":"MONDO:0013715"}]},"cv_name":"mondo","definition":"Any amyotrophic lateral sclerosis in which the cause of the disease is a mutation in the SIGMAR1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"juvenile amyotrophic lateral sclerosis","termid":"MONDO:0017593"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03598":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"amyotrophic lateral sclerosis type 16","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0060207","GARD:15794","MEDGEN:482217","OMIM:614373","UMLS:C3280587"],"synonyms":[{"name":"ALS16","type":"exact"},{"name":"SIGMAR1 amyotrophic lateral sclerosis","type":"exact"},{"name":"amyotrophic lateral sclerosis 16","type":"exact"},{"name":"amyotrophic lateral sclerosis 16, juvenile","type":"related"},{"name":"amyotrophic lateral sclerosis caused by mutation in SIGMAR1","type":"exact"}],"termid":"MONDO:0013715","terms_by_termid":{"MONDO:0013715":null},"xrefs":{"Monarch":{"xref_id":"0013715"}}}


id: GO:0048566
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"digestive tract development","termid":"GO:0048565"},{"relation_name":"is_a","term_name":"embryonic organ development","termid":"GO:0048568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic digestive tract development","termid":"GO:0048566"}


id: MONDO:0002477
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm with neuroendocrine differentiation that arises from the prostate gland. This category includes carcinoid tumors and small cell carcinomas.","definition_xrefs":["NCIT:C5545"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuroendocrine neoplasm","termid":"MONDO:0019496"},{"relation_name":"is_a","term_name":"prostate neoplasm","termid":"MONDO:0021259"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate neuroendocrine neoplasm","secondary_identifiers":["DOID:2992","UMLS:C1335515","MEDGEN:277537","ONCOTREE:PRNE"],"synonyms":[{"name":"neuroendocrine neoplasm of prostate","type":"exact"},{"name":"neuroendocrine neoplasm of prostate gland","type":"exact"},{"name":"neuroendocrine neoplasm of the prostate","type":"exact"},{"name":"neuroendocrine tumor of the prostate","type":"exact"},{"name":"neuroendocrine tumour of the prostate","type":"exact"},{"name":"prostate gland NET","type":"exact"},{"name":"prostate gland neuroendocrine neoplasm","type":"exact"},{"name":"prostate gland neuroendocrine tumor","type":"exact"},{"name":"prostate gland neuroendocrine tumor, well differentiated, low or intermediate grade","type":"exact"},{"name":"prostate gland neuroendocrine tumour","type":"exact"},{"name":"prostate neuroendocrine carcinoma","type":"related"},{"name":"prostate neuroendocrine neoplasm","type":"exact"}],"termid":"MONDO:0002477","xrefs":{"Monarch":{"xref_id":"0002477"}}}


id: GO:0006258
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of UDP-alpha-D-glucose, a substance composed of UDP-alpha-D-glucose in glycosidic linkage with uridine diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-alpha-D-glucose metabolic process","termid":"GO:0006011"},{"relation_name":"is_a","term_name":"nucleotide-sugar catabolic process","termid":"GO:0009227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"UDP-alpha-D-glucose catabolic process","secondary_identifiers":["GO:0019691"],"synonyms":[{"name":"UDP-glucose breakdown","type":"exact"},{"name":"UDP-glucose catabolism","type":"exact"},{"name":"UDP-glucose conversion","type":"related"},{"name":"UDP-glucose degradation","type":"exact"}],"termid":"GO:0006258"}


id: MONDO:0859244
data:
  {"annotated_genes":["SJAG_01081","SJAG_02364"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88773,88774],"is_not":false,"summary":null,"term":"MONDO:0859244"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01081":null,"SJAG_02364":null},"genotype_count":0,"is_obsolete":false,"name":"phosphoribosylaminoimidazole carboxylase deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:619859","MEDGEN:713858","UMLS:C1291561"],"termid":"MONDO:0859244","terms_by_termid":{"MONDO:0859244":null},"xrefs":{"Monarch":{"xref_id":"0859244"}}}


id: PBO:0041677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell adhesion molecule 3","termid":"PBO:0041677"}


id: PBO:0080035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 21","termid":"PBO:0080035"}


id: SO:0002253
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A portion of a stem loop secondary structure in RNA.","direct_ancestors":[{"relation_name":"is_a","term_name":"RNA_sequence_secondary_structure","termid":"SO:0000122"},{"relation_name":"part_of","term_name":"stem_loop","termid":"SO:0000313"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stem_loop_region","synonyms":[{"name":"stem loop region","type":"exact"}],"termid":"SO:0002253"}


id: PATO:0001695
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A fecundity which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"fecundity","termid":"PATO:0000273"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased fecundity","synonyms":[{"name":"high fecundity","type":"exact"}],"termid":"PATO:0001695"}


id: PBO:0012305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteiasome complex subunit alpha 7, Pre10 (predicted)","termid":"PBO:0012305"}


id: PBO:0055782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LONRF2 pseudogene 2","termid":"PBO:0055782"}


id: MONDO:0020408
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"complete atrioventricular canal","termid":"MONDO:0015273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"complete atrioventricular canal-tetralogy of fallot syndrome","secondary_identifiers":["GARD:16894","Orphanet:99068","UMLS:C3640086","MEDGEN:768726"],"synonyms":[{"name":"CAVC type C","type":"exact"},{"name":"CAVC-Fallot tetralogy syndrome","type":"exact"},{"name":"complete atrioventricular canal type C","type":"exact"}],"termid":"MONDO:0020408","xrefs":{"Monarch":{"xref_id":"0020408"}}}


id: PBO:0057399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548h-1","termid":"PBO:0057399"}


id: FYPO:0001085
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a polysaccharide measured in a cell differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"altered polysaccharide level during vegetative growth","synonyms":[{"name":"abnormal polysaccharide level during vegetative growth","type":"exact"},{"name":"altered cellular polysaccharide level during vegetative growth","type":"exact"},{"name":"altered polysaccharide level during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001085"}


id: MONDO:0006928
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete proliferative vitreoretinopathy (obsolete MONDO:0006928)","termid":"MONDO:0006928","xrefs":{"Monarch":{"xref_id":"0006928"}}}


id: MONDO:0009184
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epidermolysis bullosa with diaphragmatic hernia","secondary_identifiers":["MESH:C565588","OMIM:226735","UMLS:C1856933","MEDGEN:346473"],"synonyms":[{"name":"epidermolysis bullosa with diaphragmatic hernia","type":"exact"}],"termid":"MONDO:0009184","xrefs":{"Monarch":{"xref_id":"0009184"}}}


id: PR:O13915
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mpn1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U6 snRNA phosphodiesterase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23C11.10","synonyms":[{"name":"Spom972h-mpn1","type":"exact"}],"termid":"PR:O13915"}


id: FYPO:0005953
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the duration of cell cycle arrest or delay due to regulation by the mitotic G2 DNA damage checkpoint is greater than in wild type during a cellular response to ionizing radiation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased duration of mitotic DNA damage checkpoint during cellular response to ionizing radiation","termid":"FYPO:0003490"},{"relation_name":"is_a","term_name":"abnormal mitotic G2 DNA damage checkpoint","termid":"FYPO:0004373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000298","FYPO:0001320","FYPO:0000631"],"is_obsolete":false,"name":"increased duration of mitotic G2 DNA damage checkpoint during cellular response to ionizing radiation","synonyms":[{"name":"delayed mitotic G2 DNA damage checkpoint deactivation during cellular response to ionizing radiation","type":"exact"},{"name":"increased duration of mitotic G2 DNA damage checkpoint during cellular response to IR","type":"exact"},{"name":"prolonged mitotic G2 DNA damage checkpoint during cellular response to ionizing radiation","type":"exact"}],"termid":"FYPO:0005953"}


id: MONDO:0700238
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any retinopathy caused by a heterozygous variant in the BEST1 gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"BEST1-related dominant retinopathy","synonyms":[{"name":"BEST1-related dominant retinopathy","type":"exact"}],"termid":"MONDO:0700238","xrefs":{"Monarch":{"xref_id":"0700238"}}}


id: MONDO:0010121
data:
  {"annotated_genes":["SJAG_01852"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88897],"is_not":false,"summary":null,"term":"MONDO:0010121"}]},"cv_name":"mondo","definition":"Thrombocytopenia-absent radius (TAR) syndrome is a very rare congenital malformation syndrome characterized by bilateral radial aplasia and thrombocytopenia.","definition_xrefs":["Orphanet:3320"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndrome caused by partial chromosomal deletion","termid":"MONDO:0000761"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"congenital hematological disorder","termid":"MONDO:0009332"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"},{"relation_name":"is_a","term_name":"syndromic constitutional thrombocytopenia","termid":"MONDO:0018795"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"},{"relation_name":"is_a","term_name":"non-syndromic limb reduction defect","termid":"MONDO:0019713"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01852":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005497","MONDO:0005570"],"is_obsolete":false,"name":"thrombocytopenia-absent radius syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:5116","MESH:C536940","MEDGEN:61235","NCIT:C99038","OMIM:274000","NORD:1768","SCTID:85589009","DOID:14699","ICD9:759.89","NANDO:2200661","UMLS:C0175703","DECIPHER:64","MedDRA:10071719"],"synonyms":[{"name":"1q21.1 susceptibility locus for Thrombocytopenia-Absent Radius (TAR) syndrome","type":"exact"},{"name":"TAR","type":"related"},{"name":"TAR syndrome","type":"exact"},{"name":"Tar syndrome","type":"related"},{"name":"Thrombocytopenia Absent Radius Syndrome","type":"exact"},{"name":"absent radii and thrombocytopenia","type":"related"},{"name":"chromosome 1Q21.1 deletion syndrome, 200-Kb","type":"related"},{"name":"radial aplasia-thrombocytopenia syndrome","type":"exact"},{"name":"thrombocytopenia absent radii","type":"related"},{"name":"thrombocytopenia absent radius syndrome","type":"related"},{"name":"thrombocytopenia with absent radii (TAR) syndrome","type":"exact"},{"name":"thrombocytopenia-absent radius syndrome","type":"exact"}],"termid":"MONDO:0010121","terms_by_termid":{"MONDO:0010121":null},"xrefs":{"Monarch":{"xref_id":"0010121"}}}


id: MOD:01631
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes or replaces an L-alanine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-alanine residue","termid":"MOD:00901"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue removal","termid":"MOD:01651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-alanine removal","termid":"MOD:01631"}


id: PBO:0079038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Val (AAC) 7-1","termid":"PBO:0079038"}


id: MONDO:0003100
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm (disease) that involves the nerve plexus.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peripheral nervous system neoplasm","termid":"MONDO:0001406"},{"relation_name":"is_a","term_name":"nerve plexus disorder","termid":"MONDO:0024432"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"nerve plexus neoplasm","secondary_identifiers":["UMLS:C1334945","DOID:4693","NCIT:C5822","MEDGEN:235366"],"synonyms":[{"name":"neoplasm of nerve plexus","type":"exact"},{"name":"neoplasm of the nerve plexus","type":"exact"},{"name":"nerve plexus neoplasm","type":"exact"},{"name":"nerve plexus neoplasm (disease)","type":"exact"},{"name":"nerve plexus neoplasms","type":"exact"},{"name":"nerve plexus tumor","type":"exact"},{"name":"nerve plexus tumors","type":"exact"},{"name":"nerve plexus tumour","type":"exact"},{"name":"nerve plexus tumours","type":"exact"},{"name":"neural plexus neoplasms","type":"exact"},{"name":"neural plexus tumors","type":"exact"},{"name":"neural plexus tumours","type":"exact"},{"name":"tumor of nerve plexus","type":"exact"},{"name":"tumor of the nerve plexus","type":"exact"},{"name":"tumour of nerve plexus","type":"exact"},{"name":"tumour of the nerve plexus","type":"exact"}],"termid":"MONDO:0003100","xrefs":{"Monarch":{"xref_id":"0003100"}}}


id: FYPO:0002669
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of peptide-glutamate-N-acetyltransferase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal peptide alpha-N-acetyltransferase activity","termid":"FYPO:0007839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000654","FYPO:0000652","FYPO:0000707","FYPO:0000661"],"is_obsolete":false,"name":"abnormal peptide-glutamate-N-acetyltransferase activity","termid":"FYPO:0002669"}


id: PBO:0057848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3160-1","termid":"PBO:0057848"}


id: PBO:0048933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgi phosphoprotein 3 like","termid":"PBO:0048933"}


id: GO:1904228
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of glycogen synthase activity, transferring glucose-1-phosphate.","definition_xrefs":["GOC:rl","GOC:TermGenie","GOC:BHF","PMID:17569761","GO_REF:0000059"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of glycogen synthase activity, transferring glucose-1-phosphate (obsolete GO:1904228)","synonyms":[{"name":"activation of glycogen synthase activity, transferring glucose-1-phosphate","type":"narrow"},{"name":"up regulation of glycogen synthase activity, transferring glucose-1-phosphate","type":"exact"},{"name":"up-regulation of glycogen synthase activity, transferring glucose-1-phosphate","type":"exact"},{"name":"upregulation of glycogen synthase activity, transferring glucose-1-phosphate","type":"exact"}],"termid":"GO:1904228"}


id: MONDO:0013640
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"retinal vascular disorder","termid":"MONDO:0002311"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005267","MONDO:0005328"],"is_obsolete":false,"name":"familial retinal arterial macroaneurysm","secondary_identifiers":["Orphanet:284247","icd11.foundation:800928909","SCTID:764452004","MEDGEN:481835","OMIM:614224","UMLS:C3280205","GARD:12779"],"synonyms":[{"name":"FRAM","type":"exact"},{"name":"Fram","type":"exact"},{"name":"RAMSVPS","type":"related"},{"name":"retinal arterial macroaneurysm and supravalvular pulmonic stenosis","type":"exact"},{"name":"retinal arterial macroaneurysm with supravalvular pulmonic stenosis","type":"related"}],"termid":"MONDO:0013640","xrefs":{"Monarch":{"xref_id":"0013640"}}}


id: PBO:0045108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dystrophin","termid":"PBO:0045108"}


id: MONDO:0020657
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"squamous cell carcinoma","termid":"MONDO:0005096"},{"relation_name":"is_a","term_name":"virus associated tumor","termid":"MONDO:0017341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"human papillomavirus-related squamous cell carcinoma","secondary_identifiers":["NCIT:C27683","MEDGEN:272726","UMLS:C1334057"],"synonyms":[{"name":"HPV-related squamous cell carcinoma","type":"exact"},{"name":"human papilloma virus related squamous cell carcinoma","type":"exact"},{"name":"human papilloma virus-related squamous cell carcinoma","type":"exact"},{"name":"human papillomavirus-related squamous cell carcinoma","type":"exact"}],"termid":"MONDO:0020657","xrefs":{"Monarch":{"xref_id":"0020657"}}}


id: FYPO:0002256
data:
  {"alleles_by_uniquename":{"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_01906:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01906","name":"nem1delta","uniquename":"SJAG_01906:allele-1"},"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"},"SJAG_02763:allele-2":{"allele_type":"amino_acid_mutation","description":"D422E,D424E","gene_uniquename":"SJAG_02763","name":"ned1cat","synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"},"SJAG_02763:allele-4":{"allele_type":"amino_acid_mutation","description":"S235E; S651E","gene_uniquename":"SJAG_02763","name":"ned1S235E/S651E","synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"},"SJAG_02763:allele-5":{"allele_type":"amino_acid_mutation","description":"S499E; S538E; T620E; T638E; S651E","gene_uniquename":"SJAG_02763","name":"ned1-5E","uniquename":"SJAG_02763:allele-5"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"},"SJAG_03940:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03940","name":"nem2delta","uniquename":"SJAG_03940:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121195,121430,121432,121425],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003779"},{"annotations":[121259,121247,121243,121244,121251,121256],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001556"},{"annotations":[121226],"is_not":false,"rel_names":["has_part","is_a"],"summary":null,"term":"FYPO:0003976"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the size, shape, or structure of the nucleus is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nucleus","termid":"FYPO:0002403"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01745":null,"SJAG_01906":null,"SJAG_02763":null,"SJAG_03449":null,"SJAG_03940":null,"SJAG_04464":null},"genotype_count":11,"genotypes_by_uniquename":{"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]},"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]},"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type":{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]},"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1-5E(S499E; S538E; T620E; T638E; S651E aa)","display_uniquename":"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-5","expression":"Not assayed or wild type"}]}]},"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1S235E/S651E(S235E; S651E aa)","display_uniquename":"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-4","expression":"Not assayed or wild type"}]}]},"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1cat(D422E,D424E aa)","display_uniquename":"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-2","expression":"Not assayed or wild type"}]}]},"ned1delta":{"display_name":"ned1delta","display_uniquename":"ned1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}]},"nem1delta":{"display_name":"nem1delta","display_uniquename":"nem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01906:allele-1","expression":"Null"}]}]},"nem2delta":{"display_name":"nem2delta","display_uniquename":"nem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03940:allele-1","expression":"Null"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002403","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal nuclear morphology","references_by_uniquename":{"PMID:21802294":null,"PMID:24184107":null,"PMID:26774782":null,"PMID:28954740":null},"single_locus_annotated_genes":["SJAG_01906","SJAG_04464","SJAG_03449","SJAG_01745","SJAG_02763","SJAG_03940"],"single_locus_genotype_uniquenames":["lem2delta","man1delta","nem1delta","ned1delta","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","nem2delta"],"synonyms":[{"name":"deformed nucleus","type":"exact"},{"name":"nuclear morphology defects","type":"exact"}],"termid":"FYPO:0002256","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000162":null,"FYPO:0001556":null,"FYPO:0003779":null,"FYPO:0003976":null,"FYPO_EXT:0000001":null}}


id: PATO:0001880
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's having a tail or tail-like projection.","definition_xrefs":["PATOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exserted","termid":"PATO:0000623"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caudate","synonyms":[{"name":"caudal","type":"exact"},{"name":"tailed","type":"related"}],"termid":"PATO:0001880"}


id: GO:0047525
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2'-hydroxydihydrodaidzein + NADP+ = 2'-hydroxydaidzein + NADPH + H+.","definition_xrefs":["EC:1.3.1.51"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"2'-hydroxydaidzein reductase activity","secondary_identifiers":["MetaCyc:RXN-4502","RHEA:17145"],"synonyms":[{"name":"2'-hydroxy-2,3-dihydrodaidzein:NADP+ 2'-oxidoreductase activity","type":"related"},{"name":"2'-hydroxydihydrodaidzein:NADP(+) 2'-oxidoreductase activity","type":"related"},{"name":"2'-hydroxydihydrodaidzein:NADP+ 2'-oxidoreductase activity","type":"related"},{"name":"HDR activity","type":"related"},{"name":"NADPH:2'-hydroxydaidzein oxidoreductase activity","type":"related"}],"termid":"GO:0047525"}


id: MONDO:0005249
data:
  {"annotated_genes":["SJAG_05979"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86833],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0800029"}]},"cv_name":"mondo","definition":"An acute, acute and chronic, or chronic inflammation focally or diffusely affecting the lung parenchyma, caused by an infection in one or both of the lungs (by bacteria, viruses, fungi, or mycoplasma.). Symptoms include cough, shortness of breath, fevers, chills, chest pain, headache, sweating, and weakness.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"lung disorder","termid":"MONDO:0005275"},{"relation_name":"is_a","term_name":"respiratory tract infectious disorder","termid":"MONDO:0024355"},{"relation_name":"is_a","term_name":"pneumonitis","termid":"MONDO:0043905"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05979":null},"genotype_count":0,"is_obsolete":false,"name":"pneumonia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:10813","SCTID:233604007","UMLS:C0032285","ICD10CM:J18.9","ICD10CM:J15","DOID:552","icd11.foundation:142052508","ICD9:483.8","ICD9:484.8","ICD9:486","MESH:D011014","NCIT:C3333","EFO:0003106","ICD9:483"],"synonyms":[{"name":"acute pneumonia","type":"narrow"}],"termid":"MONDO:0005249","terms_by_termid":{"MONDO:0800029":null},"xrefs":{"Monarch":{"xref_id":"0005249"}}}


id: MONDO:0003342
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign mesenchymal neoplasm arising from the perivascular cells of the connective and soft tissues. It is characterized by the presence of pericytes that grow in a circumferential pattern around vessels.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"cardiovascular organ benign neoplasm","termid":"MONDO:0000629"},{"relation_name":"is_a","term_name":"pericytic neoplasm","termid":"MONDO:0002604"},{"relation_name":"is_a","term_name":"benign neoplasm","termid":"MONDO:0005165"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign perivascular tumor","secondary_identifiers":["NCIT:C6529","MEDGEN:231437","DOID:5238","UMLS:C1332532"],"synonyms":[{"name":"benign Pericytic neoplasm","type":"exact"},{"name":"benign Pericytic tumor","type":"exact"},{"name":"benign Pericytic tumour","type":"exact"},{"name":"benign pericytic neoplasm","type":"exact"},{"name":"benign perivascular neoplasm","type":"exact"},{"name":"benign perivascular tumor","type":"exact"},{"name":"pericytic neoplasm, benign","type":"exact"}],"termid":"MONDO:0003342","xrefs":{"Monarch":{"xref_id":"0003342"}}}


id: PBO:0013743
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S pombe Heme Utilization","termid":"PBO:0013743"}


id: PBO:0054571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1973","termid":"PBO:0054571"}


id: MONDO:0859316
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron overload, susceptibility to","secondary_identifiers":["MEDGEN:1814970","OMIM:620121","UMLS:C5703292"],"termid":"MONDO:0859316","xrefs":{"Monarch":{"xref_id":"0859316"}}}


id: PBO:0039913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho guanine nucleotide exchange factor 11","termid":"PBO:0039913"}


id: MONDO:0019911
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Maternal uniparental disomy of chromosome 4 is an uniparental disomy of maternal origin that most likely does not have any phenotypic expression except from cases of homozygosity for a recessive disease mutation for which only mother is a carrier.","definition_xrefs":["Orphanet:96180"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 4 disorder","termid":"MONDO:0700011"},{"relation_name":"is_a","term_name":"uniparental disomy","termid":"MONDO:0700086"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maternal uniparental disomy of chromosome 4","secondary_identifiers":["UMLS:C4707719","MEDGEN:1644554","icd11.foundation:358848660","SCTID:766238001","GARD:19332"],"synonyms":[{"name":"UPD(4)mat","type":"exact"},{"name":"maternal uniparental disomy of chromosome type 4","type":"exact"}],"termid":"MONDO:0019911","xrefs":{"Monarch":{"xref_id":"0019911"}}}


id: PBO:0060341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin VIIA","termid":"PBO:0060341"}


id: FYPO:0005229
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription from one or more RNA polymerase II promoters occurs to a lower extent than normal.","definition_xrefs":["PMID:17339332","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased transcription during vegetative growth","termid":"FYPO:0000781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0001985","FYPO:0005447","FYPO:0006551","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased transcription from RNA polymerase II promoter during vegetative growth","synonyms":[{"name":"decreased transcription from RNA pol II promoter during vegetative growth","type":"exact"},{"name":"decreased transcription from RNA polymerase II promoter during mitotic cell cycle","type":"related"},{"name":"reduced transcription from RNA polymerase II promoter","type":"exact"}],"termid":"FYPO:0005229"}


id: PBO:0074687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 67","termid":"PBO:0074687"}


id: GO:0030382
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of sperm mitochondria; the process in which they take on their characteristic morphology; they are flattened, elongated, and arranged circumferentially into a tight helical coil around the tail-dense fibers of the mature sperm.","definition_xrefs":["GOC:mah","GOC:dph","PMID:8833144","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrion organization","termid":"GO:0007005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007005"}],"interesting_parent_ids":["GO:0008150","GO:0007005"],"is_obsolete":false,"name":"sperm mitochondrion organization","synonyms":[{"name":"sperm mitochondria organisation","type":"exact"},{"name":"sperm mitochondria organization and biogenesis","type":"related"},{"name":"sperm mitochondrion organization and biogenesis","type":"related"}],"termid":"GO:0030382"}


id: PBO:0034280
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-synapsed_via_type_III_bouton_to","termid":"PBO:0034280"}


id: GO:0072109
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the glomerular mesangium over time, from its formation to the mature structure. The glomerular mesangium is the thin membrane connective tissue composed of mesangial cells, which helps to support the capillary loops in a renal glomerulus.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"connective tissue development","termid":"GO:0061448"},{"relation_name":"part_of","term_name":"glomerulus vasculature development","termid":"GO:0072012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glomerular mesangium development","termid":"GO:0072109"}


id: MONDO:0850073
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"craniosynostosis","termid":"MONDO:0015469"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"non-syndromic unicoronal craniosynostosis","secondary_identifiers":["MEDGEN:1842408","UMLS:C5680401","GARD:22470","Orphanet:620102"],"termid":"MONDO:0850073","xrefs":{"Monarch":{"xref_id":"0850073"}}}


id: PBO:0011418
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_penetrance","termid":"PBO:0011418"}


id: PBO:0083638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eIF3j component of translation initiation factor 3 (eIF3); dual function protein involved in translation initiation as a substoichiometric component (eIF3j) of eIF3; required for 20S pre-rRNA processing; required at post-transcriptional step for efficient retrotransposition; absence decreases Ty1 Gag:GFP protein levels; binds eIF3 subunits Rpg1p, Prt1p and 18S rRNA; eIF3 also involved in programmed stop codon read through; human homolog EIF3J can complement yeast hcr1 mutant","termid":"PBO:0083638"}


id: PATO:0000501
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A phase which occurs during dark cycle.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phase","termid":"PATO:0000083"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dark phase","termid":"PATO:0000501"}


id: PBO:0086671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by fungal homology comparisons and RT-PCR; identified in a screen for mutants with decreased levels of rDNA transcription","termid":"PBO:0086671"}


id: MONDO:0013586
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Chitotriosidase deficiency (obsolete MONDO:0013586)","secondary_identifiers":["OMIM:614122"],"synonyms":[{"name":"CHITD","type":"related"},{"name":"CHITOTRIOSIDASE deficiency","type":"related"},{"name":"Chitotriosidase deficiency","type":"exact"},{"name":"chitotriosidase deficiency","type":"exact"}],"termid":"MONDO:0013586","xrefs":{"Monarch":{"xref_id":"0013586"}}}


id: GO:0033569
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of lactoferrin from one side of a membrane to the other.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein transmembrane transporter activity","termid":"GO:0008320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140318"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857","GO:0140318"],"is_obsolete":false,"name":"lactoferrin transmembrane transporter activity","termid":"GO:0033569"}


id: MONDO:0002014
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The rare autosomal recessive form of the vascular type of Ehlers-Danlos syndrome. vEDS is almost always inherited in an autosomal dominant manner but rare examples of biallelic inheritance have been reported.","definition_xrefs":["MONDO:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"Ehlers-Danlos syndrome, vascular type","termid":"MONDO:0017314"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive Ehlers-Danlos syndrome, vascular type","secondary_identifiers":["MEDGEN:541287","UMLS:C0268340","DOID:14759","SCTID:70610001"],"synonyms":[{"name":"Ehlers-Danlos syndrome, recessive type 4","type":"exact"},{"name":"Ehlers-Danlos syndrome, vascular type, autosomal recessive","type":"exact"},{"name":"autosomal recessive type IV Ehlers-Danlos syndrome","type":"exact"}],"termid":"MONDO:0002014","xrefs":{"Monarch":{"xref_id":"0002014"}}}


id: FYPO:0007865
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the mitotic or meiotic spindle is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization","termid":"FYPO:0003627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to spindle","synonyms":[{"name":"normal protein localisation to spindle","type":"exact"}],"termid":"FYPO:0007865"}


id: MONDO:0014845
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive cerebellar ataxia in which the cause of the disease is a mutation in the VWA3B gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive cerebellar ataxia","termid":"MONDO:0015244"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0006025"],"is_obsolete":false,"name":"spinocerebellar ataxia, autosomal recessive 22","secondary_identifiers":["OMIM:616948","MEDGEN:934748","DOID:0111614","UMLS:C4310781"],"synonyms":[{"name":"SCAR22","type":"exact"},{"name":"VWA3B autosomal recessive cerebellar ataxia","type":"exact"},{"name":"autosomal recessive cerebellar ataxia caused by mutation in VWA3B","type":"exact"},{"name":"spinocerebellar ataxia, autosomal recessive 22","type":"exact"},{"name":"spinocerebellar ataxia, autosomal recessive 22; SCAR22","type":"exact"},{"name":"spinocerebellar ataxia, autosomal recessive type 22","type":"exact"}],"termid":"MONDO:0014845","xrefs":{"Monarch":{"xref_id":"0014845"}}}


id: PBO:0001000
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homocysteine accumulation causes a defect in purine biosynthesis","termid":"PBO:0001000"}


id: FYPO:0004294
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a cell has a septum in an abnormal location when the population in which the cell is found is in stationary phase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized septum","termid":"FYPO:0004293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"mislocalized septum in stationary phase","synonyms":[{"name":"abnormal septum localization in stationary phase","type":"related"},{"name":"abnormal septum location in stationary phase","type":"exact"},{"name":"abnormal septum position in stationary phase","type":"exact"},{"name":"abnormal septum positioning in stationary phase","type":"related"},{"name":"asymmetric septum in stationary phase","type":"exact"},{"name":"asymmetrically located septum in stationary phase","type":"exact"},{"name":"mislocalised septum in stationary phase","type":"exact"},{"name":"misplaced septum in stationary phase","type":"exact"}],"termid":"FYPO:0004294"}


id: GO:0009304
data:
  {"annotated_genes":["SJAG_02101","SJAG_04408","SJAG_04261","SJAG_01765","SJAG_04934"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[81414,76922,73036,78281,78703],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042797"}]},"cv_name":"biological_process","definition":"The synthesis of transfer RNA (tRNA) from a DNA template.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated transcription","termid":"GO:0006351"},{"relation_name":"is_a","term_name":"tRNA metabolic process","termid":"GO:0006399"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01765":null,"SJAG_02101":null,"SJAG_04261":null,"SJAG_04408":null,"SJAG_04934":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0010467","GO:0006351","GO:0006399","GO:0008150"],"is_obsolete":false,"name":"tRNA transcription","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"tRNA biosynthesis","type":"broad"},{"name":"tRNA biosynthetic process","type":"broad"},{"name":"tRNA synthesis","type":"broad"}],"termid":"GO:0009304","terms_by_termid":{"GO:0042797":null}}


id: PBO:0065369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin and Sec7 domain containing 4","termid":"PBO:0065369"}


id: GO:1902553
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of catalase activity.","definition_xrefs":["GOC:TermGenie","PMID:24285797"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catalase activity","termid":"GO:1902551"},{"relation_name":"is_a","term_name":"positive regulation of peroxidase activity","termid":"GO:2000470"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of catalase activity","synonyms":[{"name":"activation of CAT","type":"related"},{"name":"activation of bacterial catalase-peroxidase activity","type":"narrow"},{"name":"activation of caperase activity","type":"narrow"},{"name":"activation of catalase activity","type":"narrow"},{"name":"activation of catalase reaction","type":"narrow"},{"name":"activation of catalase-peroxidase activity","type":"narrow"},{"name":"activation of equilase activity","type":"narrow"},{"name":"activation of haem catalase activity","type":"narrow"},{"name":"activation of heme catalase activity","type":"narrow"},{"name":"activation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity","type":"narrow"},{"name":"activation of manganese catalase activity","type":"narrow"},{"name":"activation of optidase activity","type":"narrow"},{"name":"positive regulation of CAT","type":"related"},{"name":"positive regulation of bacterial catalase-peroxidase activity","type":"narrow"},{"name":"positive regulation of caperase activity","type":"exact"},{"name":"positive regulation of catalase reaction","type":"exact"},{"name":"positive regulation of catalase-peroxidase activity","type":"exact"},{"name":"positive regulation of equilase activity","type":"exact"},{"name":"positive regulation of haem catalase activity","type":"narrow"},{"name":"positive regulation of heme catalase activity","type":"narrow"},{"name":"positive regulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"positive regulation of manganese catalase activity","type":"narrow"},{"name":"positive regulation of optidase activity","type":"exact"},{"name":"up regulation of CAT","type":"related"},{"name":"up regulation of bacterial catalase-peroxidase activity","type":"narrow"},{"name":"up regulation of caperase activity","type":"exact"},{"name":"up regulation of catalase activity","type":"exact"},{"name":"up regulation of catalase reaction","type":"exact"},{"name":"up regulation of catalase-peroxidase activity","type":"exact"},{"name":"up regulation of equilase activity","type":"exact"},{"name":"up regulation of haem catalase activity","type":"narrow"},{"name":"up regulation of heme catalase activity","type":"narrow"},{"name":"up regulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"up regulation of manganese catalase activity","type":"narrow"},{"name":"up regulation of optidase activity","type":"exact"},{"name":"up-regulation of CAT","type":"related"},{"name":"up-regulation of bacterial catalase-peroxidase activity","type":"narrow"},{"name":"up-regulation of caperase activity","type":"exact"},{"name":"up-regulation of catalase activity","type":"exact"},{"name":"up-regulation of catalase reaction","type":"exact"},{"name":"up-regulation of catalase-peroxidase activity","type":"exact"},{"name":"up-regulation of equilase activity","type":"exact"},{"name":"up-regulation of haem catalase activity","type":"narrow"},{"name":"up-regulation of heme catalase activity","type":"narrow"},{"name":"up-regulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"up-regulation of manganese catalase activity","type":"narrow"},{"name":"up-regulation of optidase activity","type":"exact"},{"name":"upregulation of CAT","type":"related"},{"name":"upregulation of bacterial catalase-peroxidase activity","type":"narrow"},{"name":"upregulation of caperase activity","type":"exact"},{"name":"upregulation of catalase activity","type":"exact"},{"name":"upregulation of catalase reaction","type":"exact"},{"name":"upregulation of catalase-peroxidase activity","type":"exact"},{"name":"upregulation of equilase activity","type":"exact"},{"name":"upregulation of haem catalase activity","type":"narrow"},{"name":"upregulation of heme catalase activity","type":"narrow"},{"name":"upregulation of hydrogen-peroxide:hydrogen-peroxide oxidoreductase activity","type":"exact"},{"name":"upregulation of manganese catalase activity","type":"narrow"},{"name":"upregulation of optidase activity","type":"exact"}],"termid":"GO:1902553"}


id: GO:0002841
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of a T cell mediated immune response to tumor cell.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T cell mediated immunity","termid":"GO:0002710"},{"relation_name":"is_a","term_name":"negative regulation of immune response to tumor cell","termid":"GO:0002838"},{"relation_name":"is_a","term_name":"regulation of T cell mediated immune response to tumor cell","termid":"GO:0002840"},{"relation_name":"negatively_regulates","term_name":"T cell mediated immune response to tumor cell","termid":"GO:0002424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of T cell mediated immune response to tumor cell","synonyms":[{"name":"down regulation of T cell mediated immune response to tumor cell","type":"exact"},{"name":"down-regulation of T cell mediated immune response to tumor cell","type":"exact"},{"name":"downregulation of T cell mediated immune response to tumor cell","type":"exact"},{"name":"inhibition of T cell mediated immune response to tumor cell","type":"narrow"},{"name":"negative regulation of T cell mediated immune response to tumour cell","type":"exact"},{"name":"negative regulation of T lymphocyte mediated immune response to tumor cell","type":"exact"},{"name":"negative regulation of T-cell mediated immune response to tumor cell","type":"exact"},{"name":"negative regulation of T-lymphocyte mediated immune response to tumor cell","type":"exact"}],"termid":"GO:0002841"}


id: GO:2000969
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of AMPA selective glutamate receptor activity.","definition_xrefs":["PMID:21423165"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of ion transmembrane transporter activity","termid":"GO:0032414"},{"relation_name":"is_a","term_name":"regulation of AMPA receptor activity","termid":"GO:2000311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0023052","GO:0055085"],"is_obsolete":false,"name":"positive regulation of AMPA receptor activity","synonyms":[{"name":"positive regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity","type":"broad"}],"termid":"GO:2000969"}


id: GO:1903787
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of glutathione biosynthetic process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:PARL","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of biosynthetic process","termid":"GO:0009890"},{"relation_name":"is_a","term_name":"negative regulation of amide metabolic process","termid":"GO:0034249"},{"relation_name":"is_a","term_name":"negative regulation of sulfur metabolic process","termid":"GO:0051175"},{"relation_name":"is_a","term_name":"regulation of glutathione biosynthetic process","termid":"GO:1903786"},{"relation_name":"negatively_regulates","term_name":"glutathione biosynthetic process","termid":"GO:0006750"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"negative regulation of glutathione biosynthetic process","synonyms":[{"name":"down regulation of glutathione anabolism","type":"exact"},{"name":"down regulation of glutathione biosynthesis","type":"exact"},{"name":"down regulation of glutathione biosynthetic process","type":"exact"},{"name":"down regulation of glutathione formation","type":"exact"},{"name":"down regulation of glutathione synthesis","type":"exact"},{"name":"down-regulation of glutathione anabolism","type":"exact"},{"name":"down-regulation of glutathione biosynthesis","type":"exact"},{"name":"down-regulation of glutathione biosynthetic process","type":"exact"},{"name":"down-regulation of glutathione formation","type":"exact"},{"name":"down-regulation of glutathione synthesis","type":"exact"},{"name":"downregulation of glutathione anabolism","type":"exact"},{"name":"downregulation of glutathione biosynthesis","type":"exact"},{"name":"downregulation of glutathione biosynthetic process","type":"exact"},{"name":"downregulation of glutathione formation","type":"exact"},{"name":"downregulation of glutathione synthesis","type":"exact"},{"name":"inhibition of glutathione anabolism","type":"narrow"},{"name":"inhibition of glutathione biosynthesis","type":"narrow"},{"name":"inhibition of glutathione biosynthetic process","type":"narrow"},{"name":"inhibition of glutathione formation","type":"narrow"},{"name":"inhibition of glutathione synthesis","type":"narrow"},{"name":"negative regulation of glutathione anabolism","type":"exact"},{"name":"negative regulation of glutathione biosynthesis","type":"exact"},{"name":"negative regulation of glutathione formation","type":"exact"},{"name":"negative regulation of glutathione synthesis","type":"exact"}],"termid":"GO:1903787"}


id: PBO:0067827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 129","termid":"PBO:0067827"}


id: PR:Q10079
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glucose-induced degradation protein 4 homolog that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C3H1.14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H1.14","secondary_identifiers":["UniProtKB:Q10079"],"synonyms":[{"name":"Spom972h-GID4","type":"exact"}],"termid":"PR:Q10079"}


id: GO:0047171
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glucarolactone + sinapoyl-CoA = O-sinapoylglucarolactone + CoA.","definition_xrefs":["EC:2.3.1.132","MetaCyc:2.3.1.132-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-hydroxycinnamoyltransferase activity","termid":"GO:0050737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0003824","GO:0016746","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"glucarolactone O-hydroxycinnamoyltransferase activity","secondary_identifiers":["RHEA:14261"],"synonyms":[{"name":"sinapoyl-CoA:glucarolactone O-(hydroxycinnamoyl)transferase activity","type":"related"}],"termid":"GO:0047171"}


id: PBO:0078315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor delta constant","termid":"PBO:0078315"}


id: MONDO:0002551
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cerebellopontine angle tumor","termid":"MONDO:0002553"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"c-P angle neurinoma","secondary_identifiers":["NCIT:C5413","MEDGEN:232046","UMLS:C1332905","DOID:3199"],"synonyms":[{"name":"cerebellar Pontine angle neurinoma","type":"exact"},{"name":"cerebellopontine angle neurinoma","type":"exact"},{"name":"cerebellopontine angle schwannoma","type":"exact"}],"termid":"MONDO:0002551","xrefs":{"Monarch":{"xref_id":"0002551"}}}


id: PBO:0068906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 148, pseudogene","termid":"PBO:0068906"}


id: MOD:01162
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod N-linked glycosylation","definition_xrefs":["Unimod:308"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complex glycosylation","termid":"MOD:00725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"fucosylated biantennary","synonyms":[{"name":"Fucosylated biantennary","type":"related"},{"name":"dHex(1)Hex(5)HexNAc(4)","type":"related"}],"termid":"MOD:01162"}


id: PBO:0066170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBIS pseudogene 3","termid":"PBO:0066170"}


id: PBO:0083646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Elongation factor 2 (EF-2), also encoded by EFT2; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin; EFT1 has a paralog, EFT2, that arose from the whole genome duplication","termid":"PBO:0083646"}


id: GO:0000082
data:
  {"annotated_genes":["SJAG_03160","SJAG_02404","SJAG_01210","SJAG_03048","SJAG_03699","SJAG_01311","SJAG_00996","SJAG_00100","SJAG_00991","SJAG_05346","SJAG_03681","SJAG_00169","SJAG_03591","SJAG_02026","SJAG_01187","SJAG_02723","SJAG_02810","SJAG_04140","SJAG_01401","SJAG_01825","SJAG_00071"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75860,110200,113889],"is_not":false,"summary":null,"term":"GO:0000082"},{"annotations":[90756,110733,117764,104181,103440],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0031568"},{"annotations":[93121,111518],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0031571"},{"annotations":[100691,93972,93558,95140],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:2000134"},{"annotations":[118937,104196,107804,107642,108490,111031],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1900087"},{"annotations":[117200,78467,117766,93564,110739,76717],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0007089"}]},"cv_name":"biological_process","definition":"The mitotic cell cycle transition by which a cell in G1 commits to S phase. The process begins with the build up of G1 cyclin-dependent kinase (G1 CDK), resulting in the activation of transcription of G1 cyclins. The process ends with the positive feedback of the G1 cyclins on the G1 CDK which commits the cell to S phase, in which DNA replication is initiated.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic cell cycle phase transition","termid":"GO:0044772"},{"relation_name":"is_a","term_name":"cell cycle G1/S phase transition","termid":"GO:0044843"}],"gene_count":21,"genes_by_uniquename":{"SJAG_00071":null,"SJAG_00100":null,"SJAG_00169":null,"SJAG_00991":null,"SJAG_00996":null,"SJAG_01187":null,"SJAG_01210":null,"SJAG_01311":null,"SJAG_01401":null,"SJAG_01825":null,"SJAG_02026":null,"SJAG_02404":null,"SJAG_02723":null,"SJAG_02810":null,"SJAG_03048":null,"SJAG_03160":null,"SJAG_03591":null,"SJAG_03681":null,"SJAG_03699":null,"SJAG_04140":null,"SJAG_05346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044772"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0044772","GO:0007049"],"is_obsolete":false,"name":"G1/S transition of mitotic cell cycle","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-69206"],"termid":"GO:0000082","terms_by_termid":{"GO:0000082":null,"GO:0007089":null,"GO:0031568":null,"GO:0031571":null,"GO:1900087":null,"GO:2000134":null}}


id: GO:0003018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A circulatory process that occurs at the level of the vasculature.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"circulatory system process","termid":"GO:0003013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vascular process in circulatory system","synonyms":[{"name":"vasculature process","type":"exact"}],"termid":"GO:0003018"}


id: PBO:0042848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 57","termid":"PBO:0042848"}


id: MONDO:0006061
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A tear within the wall of any of the arteries of the neck (carotid artery or vertebral artery) and that allows blood to separate the wall layers. By separating a portion of the wall of the artery (a layer of the Tunica intima or tunica media), a dissection creates two lumens or passages within the vessel, the native or true lumen, and the \\\"false lumen\\\" created by the new space within the wall of the artery.","definition_xrefs":["EFO:1000059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arterial disorder","termid":"MONDO:0000473"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervical artery dissection","secondary_identifiers":["MEDGEN:1709179","UMLS:C5396999"],"termid":"MONDO:0006061","xrefs":{"Monarch":{"xref_id":"0006061"}}}


id: GO:0099179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of adhesion between pre- and post-synaptic membranes.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell-cell adhesion","termid":"GO:0022407"},{"relation_name":"is_a","term_name":"regulation of synapse organization","termid":"GO:0050807"},{"relation_name":"regulates","term_name":"synaptic membrane adhesion","termid":"GO:0099560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"regulation of synaptic membrane adhesion","synonyms":[{"name":"regulation of synapse adhesion between pre- and post-synapse","type":"exact"}],"termid":"GO:0099179"}


id: PBO:0002638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pentafunctional aromatic polypeptide Aro1 (predicted)","termid":"PBO:0002638"}


id: PBO:0001277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Swr1 complex subunit Swc4","termid":"PBO:0001277"}


id: PBO:0003965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S35","termid":"PBO:0003965"}


id: PBO:0085630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in fluoride export; nearly identical to FEX1, and deletion of both proteins results in a large increase in fluoride sensitivity compared with the single mutant; contains two FEX domains connected by a linker; part of a widespread family of conserved fluoride export proteins","termid":"PBO:0085630"}


id: PBO:0091655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uridine ribohydrolase Urh1","termid":"PBO:0091655"}


id: GO:0141082
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont interferes with, inhibits or disrupts the host reactive oxygen species (ROS)-mediated innate immune response by directly degrading host ROS. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:28288207","PMID:27825304","PMID:19684141"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont defense to host-produced reactive oxygen species","termid":"GO:0052164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated detoxification of host-generated reactive oxygen species","secondary_identifiers":["Reactome:R-HSA-1222538"],"termid":"GO:0141082"}


id: GO:0046359
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of butyrate, the anion of butyric acid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"butyrate metabolic process","termid":"GO:0019605"},{"relation_name":"is_a","term_name":"short-chain fatty acid catabolic process","termid":"GO:0019626"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"butyrate catabolic process","secondary_identifiers":["GO:0043440"],"synonyms":[{"name":"butanoic acid breakdown","type":"exact"},{"name":"butanoic acid catabolic process","type":"exact"},{"name":"butanoic acid catabolism","type":"exact"},{"name":"butanoic acid degradation","type":"exact"},{"name":"butyrate breakdown","type":"exact"},{"name":"butyrate catabolism","type":"exact"},{"name":"butyrate degradation","type":"exact"}],"termid":"GO:0046359"}


id: FYPO:0006430
data:
  {"alleles_by_uniquename":{"SJAG_04332:allele-1":{"allele_type":"amino_acid_mutation","description":"I30T,T572P","gene_uniquename":"SJAG_04332","name":"cdc25-D9","uniquename":"SJAG_04332:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121324],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007701"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell is inviable, and contains a single nucleus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"mononucleate vegetative cell","termid":"FYPO:0000060"},{"relation_name":"has_part","term_name":"inviable vegetative cell","termid":"FYPO:0001489"},{"relation_name":"is_a","term_name":"mononucleate vegetative cell","termid":"FYPO:0000060"},{"relation_name":"is_a","term_name":"inviable vegetative cell","termid":"FYPO:0001489"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04332":null},"genotype_count":1,"genotypes_by_uniquename":{"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"inviable mononucleate vegetative cell","references_by_uniquename":{"PMID:25866389":null},"single_locus_annotated_genes":["SJAG_04332"],"single_locus_genotype_uniquenames":["cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"inviable mononucleate cell during vegetative growth","type":"exact"}],"termid":"FYPO:0006430","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0007701":null,"FYPO_EXT:0000001":null}}


id: PBO:0031662
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_modification_during_vegetative_growth","termid":"PBO:0031662"}


id: MOD:01151
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Covalent modification of, or a change resulting in an alteration of the measured molecular mass of, a peptide or protein amino acid phosphorylated residue with a secondary loss of a neutral trihydrogen phosphate molecular fragment.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue with neutral loss of phosphate","termid":"MOD:00432"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphorylated residue with neutral loss of phosphate","termid":"MOD:01151"}


id: PBO:0067477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 608, pseudogene","termid":"PBO:0067477"}


id: PBO:0082584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chromatin-associated protein involved in control of stress response; regulates response to oxidative stress; involved in control of gene repression in subtelomeric chromatin; contains a SET domain; SET4 has a paralog, SET3, that arose from the whole genome duplication","termid":"PBO:0082584"}


id: GO:0103020
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-deoxy-D-xylulose + ATP = H+ + 1-deoxy-D-xylulose 5-phosphate + ADP.","definition_xrefs":["PMID:11168365","PMID:16920870","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"1-deoxy-D-xylulose kinase activity","secondary_identifiers":["MetaCyc:RXN0-382","RHEA:27990"],"termid":"GO:0103020"}


id: GO:0010588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Vascular tissue pattern formation as it occurs in the cotyledon of vascular plants.","definition_xrefs":["PMID:10559439"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xylem and phloem pattern formation","termid":"GO:0010051"},{"relation_name":"part_of","term_name":"cotyledon morphogenesis","termid":"GO:0048826"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cotyledon vascular tissue pattern formation","termid":"GO:0010588"}


id: GO:0051115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transient uridylylation of peptidyl-histidine to form 1'-(phospho-5'-uridine)-L-histidine (otherwise known as tau-UMP-histidine, tele-UMP-histidine).","definition_xrefs":["RESID:AA0372"],"gene_count":0,"genotype_count":0,"name":"obsolete enzyme active site formation via 1'-(phospho-5'-uridine)-L-histidine (obsolete GO:0051115)","termid":"GO:0051115"}


id: GO:2000644
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of receptor catabolic process.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catabolic process","termid":"GO:0009894"},{"relation_name":"is_a","term_name":"regulation of macromolecule metabolic process","termid":"GO:0060255"},{"relation_name":"regulates","term_name":"receptor catabolic process","termid":"GO:0032801"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of receptor catabolic process","synonyms":[{"name":"regulation of receptor breakdown","type":"exact"},{"name":"regulation of receptor catabolism","type":"exact"},{"name":"regulation of receptor degradation","type":"exact"}],"termid":"GO:2000644"}


id: MONDO:1010443
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cardiomyopathy that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiomyopathy, non-human animal","termid":"MONDO:1010010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cardiomyopathy, cattle","secondary_identifiers":["OMIA:000160-9913"],"termid":"MONDO:1010443","xrefs":{"Monarch":{"xref_id":"1010443"}}}


id: PBO:0109370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 5","termid":"PBO:0109370"}


id: GO:0086048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which bundle of His cardiac muscle cell membrane potential changes in the depolarizing direction from the negative resting potential towards the positive membrane potential that will be the peak of the action potential.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane depolarization during cardiac muscle cell action potential","termid":"GO:0086012"},{"relation_name":"part_of","term_name":"bundle of His cell action potential","termid":"GO:0086043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"membrane depolarization during bundle of His cell action potential","synonyms":[{"name":"membrane depolarization during bundle of His cardiac muscle cell action potential","type":"exact"}],"termid":"GO:0086048"}


id: MONDO:0014729
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hereditary spastic paraplegia in which the cause of the disease is a mutation in the MAG gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complex hereditary spastic paraplegia","termid":"MONDO:0015150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"hereditary spastic paraplegia 75","secondary_identifiers":["Orphanet:459056","UMLS:C4225250","OMIM:616680","DOID:0110820","GARD:17813","MEDGEN:896387"],"synonyms":[{"name":"MAG hereditary spastic paraplegia","type":"exact"},{"name":"SPG75","type":"exact"},{"name":"autosomal recessive spastic paraplegia 75","type":"exact"},{"name":"autosomal recessive spastic paraplegia type 75","type":"exact"},{"name":"hereditary spastic paraplegia caused by mutation in MAG","type":"exact"},{"name":"hereditary spastic paraplegia type 75","type":"exact"},{"name":"spastic paraplegia 75, autosomal recessive","type":"exact"}],"termid":"MONDO:0014729","xrefs":{"Monarch":{"xref_id":"0014729"}}}


id: FYPO:0006881
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a phytoceramide measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular phytoceramide level","synonyms":[{"name":"decreased cellular phytoceramide level during mitotic cell cycle","type":"related"},{"name":"decreased cellular phytoceramide level during vegetative growth","type":"exact"},{"name":"decreased phytoceramide accumulation","type":"related"},{"name":"reduced cellular phytoceramide level","type":"exact"}],"termid":"FYPO:0006881"}


id: PBO:0040718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL9 transcription coactivator","termid":"PBO:0040718"}


id: PBO:0077986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (TGC) 8-1","termid":"PBO:0077986"}


id: GO:0043748
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-succinylbenzoate + H2O = 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate.","definition_xrefs":["PMID:8335646"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"O-succinylbenzoate synthase activity","secondary_identifiers":["EC:4.2.1.113","RHEA:10196"],"termid":"GO:0043748"}


id: PBO:0073940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC18A2 antisense RNA 1","termid":"PBO:0073940"}


id: PBO:0075632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small proline rich protein 2B","termid":"PBO:0075632"}


id: MONDO:1012330
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"laminitis, non-human animal","termid":"MONDO:1011767"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"laminitis, horse","secondary_identifiers":["OMIA:001225-9796"],"termid":"MONDO:1012330","xrefs":{"Monarch":{"xref_id":"1012330"}}}


id: GO:1904110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of plus-end directed microfilament motor activity.","definition_xrefs":["GOC:TermGenie","PMID:25717181","GO_REF:0000059","GOC:kmv"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of plus-end directed microfilament motor activity (obsolete GO:1904110)","synonyms":[{"name":"regulation of barbed-end directed actin-filament motor activity","type":"exact"},{"name":"regulation of plus-end directed actin filament motor activity","type":"related"},{"name":"regulation of plus-end directed actin-filament motor activity","type":"exact"}],"termid":"GO:1904110"}


id: PBO:0080579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 5","termid":"PBO:0080579"}


id: PBO:0030884
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cellular_metabolism_phenotype_during_vegetative_growth","termid":"PBO:0030884"}


id: PBO:0065502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paraspeckle component 1","termid":"PBO:0065502"}


id: PBO:0087808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-binding protein (TBP); general transcription factor that interacts with other factors to form the preinitiation complex at promoters; essential for viability, highly conserved; yeast gene can complement mutations in human homolog TBP","termid":"PBO:0087808"}


id: MONDO:0037743
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm that arises from the soft tissues of the mediastinum.","definition_xrefs":["NCIT:C6642"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mediastinal mesenchymal tumor","termid":"MONDO:0003512"},{"relation_name":"is_a","term_name":"mediastinal cancer","termid":"MONDO:0005843"},{"relation_name":"is_a","term_name":"malignant soft tissue neoplasm","termid":"MONDO:0024637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"mediastinal soft tissue cancer","secondary_identifiers":["UMLS:C1334599","MEDGEN:277335"],"synonyms":[{"name":"malignant mediastinal mesenchymal tumor","type":"exact"},{"name":"malignant mediastinal mesenchymal tumour","type":"exact"},{"name":"malignant mediastinal soft tissue neoplasm","type":"exact"},{"name":"malignant mediastinal soft tissue tumor","type":"exact"},{"name":"malignant mediastinal soft tissue tumour","type":"exact"},{"name":"malignant soft tissue neoplasm of mediastinum","type":"exact"},{"name":"malignant soft tissue neoplasm of the mediastinum","type":"exact"},{"name":"malignant soft tissue tumor of mediastinum","type":"exact"},{"name":"malignant soft tissue tumor of the mediastinum","type":"exact"},{"name":"malignant soft tissue tumour of mediastinum","type":"exact"},{"name":"malignant soft tissue tumour of the mediastinum","type":"exact"},{"name":"mediastinal mesenchymal tumor, malignant","type":"exact"}],"termid":"MONDO:0037743","xrefs":{"Monarch":{"xref_id":"0037743"}}}


id: PBO:0073479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3GL interacting endocytic adaptor 1","termid":"PBO:0073479"}


id: PBO:0026879
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_cycle_regulation_during_cellular_response_to_latrunculin_A","termid":"PBO:0026879"}


id: PBO:0109348
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"9 [SWVTETVTSGSVGFTTTIATPIGTTAGTVLVDIPTP-consensus] repeats reported (5 copies in reference)","termid":"PBO:0109348"}


id: PBO:0039299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALG13 UDP-N-acetylglucosaminyltransferase subunit","termid":"PBO:0039299"}


id: PBO:0039546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD42 divergent transcript","termid":"PBO:0039546"}


id: PBO:0073878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC10A5 pseudogene 1","termid":"PBO:0073878"}


id: PBO:0090007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor for histones, zf-GATA-type Ams2","termid":"PBO:0090007"}


id: PBO:0057013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 103a-2","termid":"PBO:0057013"}


id: MONDO:0012762
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any catecholaminergic polymorphic ventricular tachycardia in which the cause of the disease is a mutation in the CASQ2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catecholaminergic polymorphic ventricular tachycardia","termid":"MONDO:0017990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"catecholaminergic polymorphic ventricular tachycardia 2","secondary_identifiers":["MEDGEN:393837","GARD:15535","DOID:0060676","NCIT:C148368","OMIM:611938","ICD10CM:I47.2","UMLS:C2677794"],"synonyms":[{"name":"CASQ2 catecholaminergic polymorphic ventricular tachycardia","type":"exact"},{"name":"CPVT2","type":"related"},{"name":"CVPT2","type":"exact"},{"name":"catecholaminergic polymorphic ventricular tachycardia 2","type":"exact"},{"name":"catecholaminergic polymorphic ventricular tachycardia caused by mutation in CASQ2","type":"exact"},{"name":"catecholaminergic polymorphic ventricular tachycardia type 2","type":"exact"},{"name":"ventricular tachycardia, catecholaminergic polymorphic, 2","type":"related"},{"name":"ventricular tachycardia, catecholaminergic polymorphic, type 2","type":"exact"},{"name":"ventricular tachycardia, stress-induced polymorphic","type":"related"}],"termid":"MONDO:0012762","xrefs":{"Monarch":{"xref_id":"0012762"}}}


id: MONDO:0017646
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete neurodegenerative disease with chorea (obsolete MONDO:0017646)","secondary_identifiers":["Orphanet:306719"],"termid":"MONDO:0017646","xrefs":{"Monarch":{"xref_id":"0017646"}}}


id: MONDO:0024248
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A name originally applied to a group of skin diseases characterized by the formation of fine, branny scales, but now used only with a modifier. (Dorland, 27th ed)","definition_xrefs":["MESH:D010915"],"gene_count":0,"genotype_count":0,"name":"obsolete pityriasis (obsolete MONDO:0024248)","secondary_identifiers":["SCTID:34630004","ICD9:696.5"],"synonyms":[{"name":"Pityriases","type":"related"}],"termid":"MONDO:0024248","xrefs":{"Monarch":{"xref_id":"0024248"}}}


id: PBO:0089200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis CGR1 family","termid":"PBO:0089200"}


id: PBO:0042427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle 27 pseudogene 11","termid":"PBO:0042427"}


id: PBO:0070070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 27, pseudogene","termid":"PBO:0070070"}


id: PBO:0075647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPRY4 intronic transcript 1","termid":"PBO:0075647"}


id: GO:0009934
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of meristem organization.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"meristem structural organization","termid":"GO:0009933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of meristem structural organization","synonyms":[{"name":"regulation of meristem organisation","type":"exact"},{"name":"regulation of meristem organization","type":"broad"}],"termid":"GO:0009934"}


id: MONDO:0001278
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A syndrome characterized by progressive life-threatening RESPIRATORY INSUFFICIENCY in the absence of known LUNG DISEASES, usually following a systemic insult such as surgery or major TRAUMA.","definition_xrefs":["MESH:D012128"],"gene_count":0,"genotype_count":0,"name":"obsolete adult respiratory distress syndrome (obsolete MONDO:0001278)","termid":"MONDO:0001278","xrefs":{"Monarch":{"xref_id":"0001278"}}}


id: GO:0060115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes committed to become a vestibular receptor cell.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inner ear receptor cell fate commitment","termid":"GO:0060120"},{"relation_name":"part_of","term_name":"vestibular receptor cell differentiation","termid":"GO:0060114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vestibular receptor cell fate commitment","synonyms":[{"name":"vestibular hair cell fate commitment","type":"exact"}],"termid":"GO:0060115"}


id: PBO:0001421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ypt subfamily","termid":"PBO:0001421"}


id: SO:0001689
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The restriction enzyme cleavage junction on the 5' strand of the nucleotide sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"single_strand_restriction_enzyme_cleavage_site","termid":"SO:0001694"},{"relation_name":"part_of","term_name":"sticky_end_restriction_enzyme_cleavage_site","termid":"SO:0001692"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_prime_restriction_enzyme_junction","synonyms":[{"name":"5' restriction enzyme junction","type":"exact"}],"termid":"SO:0001689"}


id: PR:000050502
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the dis1 gene in Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOG/XMAP215 microtubule plus end tracking polymerase Dis1 (Schizosaccharomyces pombe)","pombase_gene_id":"SPCC736.14","synonyms":[{"name":"SPCC736.14","type":"related"},{"name":"Spom-dis1","type":"exact"},{"name":"dis1","type":"related"},{"name":"phosphoprotein p99","type":"exact"}],"termid":"PR:000050502"}


id: PBO:0029183
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_trehalose_6-phosphate_level","termid":"PBO:0029183"}


id: GO:0044592
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of pullulan stimulus.","definition_xrefs":["GOC:mengo_curators","GOC:tt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to carbohydrate","termid":"GO:0009743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to pullulan","termid":"GO:0044592"}


id: PBO:0030342
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_MCM_complex_assembly","termid":"PBO:0030342"}


id: GO:0060855
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of venous endothelial cells out of the veins giving rise to the precursors of lymphatic endothelial cells.","definition_xrefs":["GOC:tb","GOC:sdb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"blood vessel endothelial cell migration","termid":"GO:0043534"},{"relation_name":"part_of","term_name":"lymph vessel development","termid":"GO:0001945"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"venous endothelial cell migration involved in lymph vessel development","termid":"GO:0060855"}


id: SO:0002104
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A pseudogenic joining region which closely resembles a known functional T receptor (TR) joining gene but in which the coding region has stop codons, frameshift mutations or a mutation that effects the initiation codon that rearranges at the DNA level and codes the joining region of the variable domain of an immunoglobulin chain.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html","IGMT:http://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T_cell_receptor_pseudogene","termid":"SO:0002099"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TR_J_pseudogene","synonyms":[{"name":"T cell receptor J pseudogene","type":"exact"},{"name":"T cell receptor Joining pseudogene","type":"exact"},{"name":"TR J pseudogene","type":"exact"},{"name":"T_cell_receptor_J_pseudogene","type":"exact"},{"name":"T_cell_receptor_Joining_pseudogene","type":"exact"}],"termid":"SO:0002104"}


id: PBO:0080209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vestigial like family member 3","termid":"PBO:0080209"}


id: PBO:0035883
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-ophthalmic_acid_absent_from_cell","termid":"PBO:0035883"}


id: PBO:0064401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pancreatic lipase","termid":"PBO:0064401"}


id: GO:0003371
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any cellular process that results in the specification, formation or maintenance of polarized cytoskeletal structures that contribute to the cell polarity of a migrating ameboid cell.","definition_xrefs":["GOC:tb","GOC:dph","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment or maintenance of cytoskeleton polarity","termid":"GO:0030952"},{"relation_name":"part_of","term_name":"establishment of cell polarity involved in ameboidal cell migration","termid":"GO:0003365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0007163"},{"rel_name":"part_of","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0007010","GO:0007163","GO:0008150"],"is_obsolete":false,"name":"establishment or maintenance of cytoskeleton polarity involved in ameboidal cell migration","termid":"GO:0003371"}


id: PBO:0043126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium and integrin binding family member 4","termid":"PBO:0043126"}


id: GO:0050454
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: coenzyme F420 + H(2) + H+ = reduced coenzyme F420.","definition_xrefs":["EC:1.12.98.1","RHEA:23760"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on hydrogen as donor, with other known acceptors","termid":"GO:0046995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"coenzyme F420 hydrogenase activity","secondary_identifiers":["MetaCyc:COENZYME-F420-HYDROGENASE-RXN","KEGG_REACTION:R03025"],"synonyms":[{"name":"8-hydroxy-5-deazaflavin-reducing hydrogenase activity","type":"related"},{"name":"F420-reducing hydrogenase activity","type":"related"},{"name":"coenzyme F420-dependent hydrogenase activity","type":"related"},{"name":"hydrogen:coenzyme F420 oxidoreductase activity","type":"related"}],"termid":"GO:0050454"}


id: GO:0051114
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The uridylylation of peptidyl-histidine to form peptidyl-1'-(phospho-5'-uridine)-L-histidine (otherwise known as tau-UMP-histidine, tele-UMP-histidine) or peptidyl-3'-(phospho-5'-uridine)-L-histidine (otherwise known as pi-UMP-histidine, pros-UMP-histidine).","definition_xrefs":["RESID:AA0372"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein uridylylation","termid":"GO:0018177"},{"relation_name":"is_a","term_name":"peptidyl-histidine modification","termid":"GO:0018202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-histidine uridylylation","termid":"GO:0051114"}


id: PBO:0052894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 10-5","termid":"PBO:0052894"}


id: PR:Q9UUG3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dph4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UUG3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphthamide biosynthesis protein 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC926.05c","synonyms":[{"name":"Spom972h-dph4","type":"exact"}],"termid":"PR:Q9UUG3"}


id: PBO:0073982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 24 member 3","termid":"PBO:0073982"}


id: PBO:0109024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HHLA1 neighbor of OC90","termid":"PBO:0109024"}


id: PBO:0063177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polybromo 1","termid":"PBO:0063177"}


id: PBO:0064195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A and acyltransferase 3","termid":"PBO:0064195"}


id: MONDO:0971154
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hepatic porphyria","termid":"MONDO:0002520"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0005066","MONDO:0002515"],"is_obsolete":false,"name":"hepatic cutaneous porphyria","secondary_identifiers":["Orphanet:659698"],"termid":"MONDO:0971154","xrefs":{"Monarch":{"xref_id":"0971154"}}}


id: PBO:0067030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 43, pseudogene","termid":"PBO:0067030"}


id: MONDO:1011022
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lissencephaly and cerebellar hypoplasia that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lissencephaly and cerebellar hypoplasia, non-human animal","termid":"MONDO:1010247"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lissencephaly and cerebellar hypoplasia, dog","secondary_identifiers":["OMIA:001867-9615"],"termid":"MONDO:1011022","xrefs":{"Monarch":{"xref_id":"1011022"}}}


id: PBO:0014260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved ATP binding protein, implicated in sister chromatid cohesion Gpn2 (predicted)","termid":"PBO:0014260"}


id: PBO:0065951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD17 pseudogene 2","termid":"PBO:0065951"}


id: PR:O42931
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 26S protease regulatory subunit 7 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04090","PRO:DNx","PANTHER:PTHR23073:SF13"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S protease regulatory subunit 7 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16C6.07c","secondary_identifiers":["UniProtKB:O42931"],"synonyms":[{"name":"Spom972h-PSMC2","type":"exact"}],"termid":"PR:O42931"}


id: PBO:0088792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication termination factor Rtf2","termid":"PBO:0088792"}


id: PBO:0013114
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisie STM1","termid":"PBO:0013114"}


id: GO:0031914
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that decreases synaptic plasticity, the ability of synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synaptic plasticity","termid":"GO:0048167"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of synaptic plasticity","synonyms":[{"name":"down regulation of synaptic plasticity","type":"exact"},{"name":"down-regulation of synaptic plasticity","type":"exact"},{"name":"downregulation of synaptic plasticity","type":"exact"},{"name":"inhibition of synaptic plasticity","type":"narrow"}],"termid":"GO:0031914"}


id: PBO:0071015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 17","termid":"PBO:0071015"}


id: PBO:0046502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERI1 exoribonuclease family member 3","termid":"PBO:0046502"}


id: PBO:0048473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucosaminyl (N-acetyl) transferase 1","termid":"PBO:0048473"}


id: PBO:0085126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleolar protein; specifically associated with the U3 snoRNA, part of the large ribonucleoprotein complex known as the small subunit (SSU) processome, required for 18S rRNA biogenesis, part of the active pre-rRNA processing complex","termid":"PBO:0085126"}


id: GO:0042592
data:
  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id: MONDO:0007331
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id: PBO:0051067
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id: PBO:0060906
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id: PBO:0064937
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id: MOD:00489
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id: PBO:0086261
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that regulates phospholipid asymmetry at plasma membrane; may act to generate normal levels of PI4P; may act together with or upstream of Stt4p; at least partially mediates proper localization of Stt4p to the plasma membrane","termid":"PBO:0086261"}


id: PBO:0000794
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id: GO:0106346
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id: PBO:0077226
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id: MONDO:0020174
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id: PBO:0073525
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain containing 19","termid":"PBO:0073525"}


id: MONDO:0020358
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id: GO:0016753
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id: PBO:0041923
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id: MONDO:0014274
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id: GO:0060156
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id: GO:1901122
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id: MONDO:0016100
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id: FYPO:0000229
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An inviable phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes septation despite abnormal mitotic nuclear division, such that the septum physically divides the nucleus into two parts, giving rise to inviable daughter cells.","definition_xrefs":["PomBase:vw","PomBase:jh","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"abnormal mitotic sister chromatid segregation","termid":"FYPO:0000141"},{"relation_name":"has_part","term_name":"premature septum assembly","termid":"FYPO:0003250"},{"relation_name":"is_a","term_name":"abnormal mitotic sister chromatid segregation","termid":"FYPO:0000141"},{"relation_name":"is_a","term_name":"inviable vegetative cell","termid":"FYPO:0001489"},{"relation_name":"is_a","term_name":"premature septum assembly","termid":"FYPO:0003250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0000032"},{"rel_name":"has_part","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000337","FYPO:0000002","FYPO:0000004","FYPO:0000641","FYPO:0001320","FYPO:0000631","FYPO:0001985","FYPO:0000032"],"is_obsolete":false,"name":"cut","secondary_identifiers":["FYPO:0000322","FYPO:0000323"],"synonyms":[{"name":"cut during mitotic cell cycle","type":"related"},{"name":"cut during vegetative growth","type":"exact"},{"name":"mitotic catastrophe","type":"related"},{"name":"septation following abnormal nuclear division","type":"exact"}],"termid":"FYPO:0000229"}


id: PBO:0047498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fem-1 homolog C","termid":"PBO:0047498"}


id: PBO:0078352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (CTC) 18-1","termid":"PBO:0078352"}


id: PBO:0071350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L29 pseudogene 8","termid":"PBO:0071350"}


id: GO:0090519
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism or cell protects itself from anoxia, which may also result in resistance to repeated exposure to anoxia.","definition_xrefs":["PMID:19372430","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to anoxia","termid":"GO:0034059"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anoxia protection","termid":"GO:0090519"}


id: PBO:0116297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleosome spacing factor; subunit of INO80 chromatin remodeling complex; involved in positioning and spacing of nucleosomes over most genes independently of transcription; promotes nucleosome shifts in the 3' direction; has a role in modulating stress gene transcription","termid":"PBO:0116297"}


id: GO:0102126
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + coniferyl aldehyde + NADPH + O2 = 5-hydroxy-coniferaldehyde + NADP + H2O.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"coniferyl aldehyde 5-hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-1142"],"termid":"GO:0102126"}


id: GO:0061954
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the rate or extent of actin polymerization as part of sperm capacitation. This process prevents a spontaneous acrosome reaction.","definition_xrefs":["PMID:25966627","PMID:27178669","PMID:26514336","PMID:15749953"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of actin filament polymerization involved in sperm capacitation (obsolete GO:0061954)","termid":"GO:0061954"}


id: PBO:0114352
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metazoa do not have tef3 due to differenees in the translation machinery","termid":"PBO:0114352"}


id: PBO:0087893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription cofactor; forms complexes with Swi4p and Mbp1p to regulate transcription at the G1/S transition; involved in meiotic gene expression; also binds Stb1p to regulate transcription at START; cell wall stress induces phosphorylation by Mpk1p, which regulates Swi6p localization; required for the unfolded protein response, independently of its known transcriptional coactivators","termid":"PBO:0087893"}


id: GO:0042599
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A membrane-bounded organelle, specialized for the storage and secretion of various substances (surfactant phospholipids, glycoproteins and acid phosphates) which are arranged in the form of tightly packed, concentric, membrane sheets or lamellae. Has some similar properties to, but is distinct from, a lysosome.","definition_xrefs":["GOC:jl","GOC:cjm","PMID:12243725","Wikipedia:Lamellar_granule"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretory granule","termid":"GO:0030141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0031410","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"lamellar body","secondary_identifiers":["NIF_Subcellular:sao1379604862"],"synonyms":[{"name":"Odland body","type":"narrow"},{"name":"keratinosome","type":"narrow"},{"name":"lamellar granule","type":"exact"},{"name":"membrane-coating granule","type":"exact"}],"termid":"GO:0042599"}


id: GO:0033566
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a gamma-tubulin complex is transported to, or maintained in, a specific location.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"gamma-tubulin complex localization","synonyms":[{"name":"establishment and maintenance of gamma-tubulin complex localization","type":"exact"},{"name":"gamma-tubulin complex localisation","type":"exact"}],"termid":"GO:0033566"}


id: PBO:0053581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 604","termid":"PBO:0053581"}


id: PBO:0053880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1159","termid":"PBO:0053880"}


id: PBO:0003089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic inhibitor kinase Mik1","termid":"PBO:0003089"}


id: PBO:0053507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 491","termid":"PBO:0053507"}


id: PBO:0091840
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae CSE4","termid":"PBO:0091840"}


id: MOD:00090
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-alanine residue to L-alanine amide.","definition_xrefs":["PubMed:1377792","PubMed:952951","RESID:AA0081","PubMed:8472537","PubMed:2069951"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C1-amidated residue","termid":"MOD:00883"},{"relation_name":"is_a","term_name":"modified L-alanine residue","termid":"MOD:00901"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-alanine amide","synonyms":[{"name":"(2S)-2-aminopropanamide","type":"exact"},{"name":"AlaN","type":"exact"},{"name":"L-alanine amide","type":"exact"},{"name":"MOD_RES Alanine amide","type":"exact"},{"name":"alaninamide","type":"exact"},{"name":"amidated L-alanine","type":"exact"}],"termid":"MOD:00090"}


id: FYPO:0007452
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the plus ends end of microtubules is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:15809031"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to microtubule end during mitotic interphase","termid":"FYPO:0005813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to microtubule plus-end","synonyms":[{"name":"normal protein localisation to microtubule plus-end","type":"exact"},{"name":"normal protein localization to microtubule plus-end during mitotic cell cycle","type":"related"},{"name":"normal protein localization to microtubule plus-end during vegetative growth","type":"exact"}],"termid":"FYPO:0007452"}


id: PBO:0042586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebellar degeneration related protein 2","termid":"PBO:0042586"}


id: GO:0071607
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of macrophage inflammatory protein-1 gamma due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:add","GOC:rv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"macrophage inflammatory protein-1 gamma production","synonyms":[{"name":"CCL9 production","type":"exact"},{"name":"MIP-1g production","type":"exact"},{"name":"chemokine (C-C motif) ligand 9 production","type":"exact"}],"termid":"GO:0071607"}


id: MONDO:0004462
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A mucinous cystic neoplasm that arises from the extrahepatic bile ducts.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bile duct cystadenoma","termid":"MONDO:0003420"},{"relation_name":"is_a","term_name":"extrahepatic bile duct adenoma","termid":"MONDO:0003445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"extrahepatic bile duct cystadenoma","secondary_identifiers":["NCIT:C5851","DOID:8105","UMLS:C1333504","MEDGEN:272603"],"synonyms":[{"name":"cystadenoma of extrahepatic bile duct","type":"exact"},{"name":"cystadenoma of the extrahepatic bile duct","type":"exact"},{"name":"extrahepatic bile duct cystadenoma","type":"exact"},{"name":"extrahepatic bile duct mucinous cystic neoplasm","type":"exact"}],"termid":"MONDO:0004462","xrefs":{"Monarch":{"xref_id":"0004462"}}}


id: PBO:0078946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Arg (anticodon TCG) 4-1","termid":"PBO:0078946"}


id: PBO:0061581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-terminal Xaa-Pro-Lys N-methyltransferase 2","termid":"PBO:0061581"}


id: PR:Q9USN0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GPI mannosyltransferase 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04485","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI mannosyltransferase 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16A11.06c","secondary_identifiers":["UniProtKB:Q9USN0"],"synonyms":[{"name":"GPI mannosyltransferase III (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GPI-MT-III (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PIGB","type":"exact"},{"name":"glycosylphosphatidylinositol-anchor biosynthesis protein 10 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USN0"}


id: GO:0030068
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete lytic viral life cycle (obsolete GO:0030068)","synonyms":[{"name":"lytic viral life cycle","type":"exact"}],"termid":"GO:0030068"}


id: GO:0050606
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-carboxy-2-hydroxymuconate semialdehyde hemiacetal + NADP+ = 2-oxo-2H-pyran-4,6-dicarboxylate + H+ + NADPH.","definition_xrefs":["RHEA:29587"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"4-carboxy-2-hydroxymuconate semialdehyde hemiacetal dehydrogenase activity","secondary_identifiers":["MetaCyc:1.2.1.45-RXN","EC:1.1.1.312","KEGG_REACTION:R04279"],"synonyms":[{"name":"2-hydroxy-4-carboxymuconate 6-semialdehyde dehydrogenase activity","type":"related"},{"name":"4-carboxy-2-hydroxy-cis,cis-muconate-6-semialdehyde:NADP(+) oxidoreductase activity","type":"related"},{"name":"4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase activity","type":"related"},{"name":"alpha-hydroxy-gamma-carboxymuconic epsilon-semialdehyde dehydrogenase activity","type":"related"}],"termid":"GO:0050606"}


id: PBO:0046208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C","termid":"PBO:0046208"}


id: MONDO:0018118
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete disorder of phospholipids, sphingolipids and fatty acids biosynthesis with central nervous system predominant involvement (obsolete MONDO:0018118)","secondary_identifiers":["Orphanet:352306"],"termid":"MONDO:0018118","xrefs":{"Monarch":{"xref_id":"0018118"}}}


id: MONDO:0008466
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Karsch-Neugebauer syndrome is a rare syndrome characterized by split-hand and split-foot deformity and ocular abnormalities, mainly a congenital nystagmus.","definition_xrefs":["Orphanet:2329"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Karsch-Neugebauer syndrome","secondary_identifiers":["GARD:4967","SCTID:722032005","OMIM:183800","UMLS:C1866740","MESH:C537319","MEDGEN:401072"],"synonyms":[{"name":"KNS","type":"related"},{"name":"Karsch-Neugebauer syndrome","type":"exact"},{"name":"Nystagmus-split hand syndrome","type":"related"},{"name":"split hand nystagmus syndrome","type":"related"},{"name":"split hand split foot nystagmus","type":"related"},{"name":"split hand/split foot-nystagmus syndrome","type":"exact"},{"name":"split-hand with congenital NYSTAGMUS, fundal changes, and cataracts","type":"related"}],"termid":"MONDO:0008466","xrefs":{"Monarch":{"xref_id":"0008466"}}}


id: PBO:0048461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP cyclohydrolase 1","termid":"PBO:0048461"}


id: PBO:0120267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HNRPLL antisense RNA 1","termid":"PBO:0120267"}


id: GO:0004639
data:
  {"annotated_genes":["SJAG_02364"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78502],"is_not":false,"summary":null,"term":"GO:0004639"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate + L-aspartate + ATP = (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate + ADP + 2 H+ + phosphate.","definition_xrefs":["EC:6.3.2.6","RHEA:22628"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02364":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"phosphoribosylaminoimidazolesuccinocarboxamide synthase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["KEGG_REACTION:R04591","MetaCyc:SAICARSYN-RXN","Reactome:R-HSA-73805"],"synonyms":[{"name":"4-((N-succinylamino)carbonyl)-5-aminoimidazole ribonucleotide synthetase activity","type":"related"},{"name":"4-(N-succinocarboxamide)-5-aminoimidazole synthetase activity","type":"related"},{"name":"4-[(N-succinylamino)carbonyl]-5-aminoimidazole ribonucleotide synthetase activity","type":"related"},{"name":"5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate:L-aspartate ligase (ADP-forming)","type":"related"},{"name":"5-aminoimidazole-4-N-succinocarboxamide ribonucleotide synthetase activity","type":"related"},{"name":"PurC","type":"related"},{"name":"SAICAR synthase activity","type":"related"},{"name":"SAICAR synthetase activity","type":"related"},{"name":"SAICARs activity","type":"related"},{"name":"phosphoribosylaminoimidazole-succinocarboxamide synthase activity","type":"related"},{"name":"phosphoribosylaminoimidazole-succinocarboxamide synthetase activity","type":"related"},{"name":"phosphoribosylaminoimidazolesuccinocarboxamide synthetase activity","type":"related"}],"termid":"GO:0004639","terms_by_termid":{"GO:0004639":null}}


id: GO:1903502
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of translation repressor activity.","definition_xrefs":["PMID:14723848","GOC:bhm","GOC:TermGenie","GO_REF:0000088"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"translation repressor complex","termid":"GO:1903502"}


id: SO:0002032
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non-coding transcript encoded by sequences adjacent to the ends of the 5' and 3' miR-encoding sequences that abut the loop in precursor miRNA.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small_regulatory_ncRNA","termid":"SO:0000370"},{"relation_name":"part_of","term_name":"pre_miRNA","termid":"SO:0001244"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"moR","synonyms":[{"name":"microRNA-offset RNA","type":"exact"}],"termid":"SO:0002032"}


id: PATO:0001681
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality that inheres in a homogeneous substance containing 6.02 x 1023 atoms or molecules.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Molar_mass"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mass","termid":"PATO:0000125"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"molar mass","termid":"PATO:0001681"}


id: GO:0032342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of aldosterone, a corticosteroid hormone that is produced by the zona glomerulosa of the adrenal cortex and regulates salt (sodium and potassium) and water balance.","definition_xrefs":["PMID:16527843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C21-steroid hormone biosynthetic process","termid":"GO:0006700"},{"relation_name":"is_a","term_name":"mineralocorticoid biosynthetic process","termid":"GO:0006705"},{"relation_name":"is_a","term_name":"aldosterone metabolic process","termid":"GO:0032341"},{"relation_name":"is_a","term_name":"primary alcohol biosynthetic process","termid":"GO:0034309"},{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"aldehyde biosynthetic process","termid":"GO:0046184"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"aldosterone biosynthetic process","termid":"GO:0032342"}


id: MONDO:0004790
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A reversible condition wherein large vacuoles of triglyceride fat accumulate in liver cells via the process of steatosis.","definition_xrefs":["Wikipedia:Fatty_liver"],"direct_ancestors":[{"relation_name":"is_a","term_name":"liver disorder","termid":"MONDO:0005154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"fatty liver disease","secondary_identifiers":["DOID:9452","ICD9:571.8","MESH:D005234","UMLS:C2711227","SCTID:197321007","SCTID:371330000","ICD9:571.0","MEDGEN:398225"],"synonyms":[{"name":"fatty change of liver","type":"exact"},{"name":"fatty liver","type":"exact"},{"name":"hepatic lipidosis","type":"exact"},{"name":"steatosis of liver","type":"exact"}],"termid":"MONDO:0004790","xrefs":{"Monarch":{"xref_id":"0004790"}}}


id: MONDO:0015189
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. An adenocarcinoma that arises from the small intestine. Histologic variants include mucinous adenocarcinoma and signet ring cell carcinoma.","definition_xrefs":["NCIT:C7888"],"gene_count":0,"genotype_count":0,"name":"obsolete adenocarcinoma of small instestine (obsolete MONDO:0015189)","termid":"MONDO:0015189","xrefs":{"Monarch":{"xref_id":"0015189"}}}


id: MONDO:0007952
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maxillofacial dysostosis","secondary_identifiers":["UMLS:C1835088","MEDGEN:320517","MESH:C563599","OMIM:155000"],"synonyms":[{"name":"maxillofacial dysostosis","type":"exact"}],"termid":"MONDO:0007952","xrefs":{"Monarch":{"xref_id":"0007952"}}}


id: PBO:0034638
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_cell_surface_glycoprotein_gene_mRNA_during_vegetative_growth","termid":"PBO:0034638"}


id: GO:0140586
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Bridging together a cis-regulatory element and a terminator DNA sequences on the chromatin, holding two loop anchors together, maintaining a chromatin loop.","definition_xrefs":["PMID:19933151"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin loop anchoring activity","termid":"GO:0140587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0060090","GO:0003677","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"promoter-terminator loop anchoring activity","synonyms":[{"name":"terminator-promoter loop anchoring activity","type":"exact"}],"termid":"GO:0140586"}


id: GO:0005354
data:
  {"annotated_genes":["SJAG_00057"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[112499],"is_not":false,"summary":null,"term":"GO:0005354"}]},"cv_name":"molecular_function","definition":"Enables the transfer of galactose from one side of a membrane to the other. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose transmembrane transporter activity","termid":"GO:0015149"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00057":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"galactose transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"galactose/glucose (methylgalactoside) porter activity","type":"related"}],"termid":"GO:0005354","terms_by_termid":{"GO:0005354":null}}


id: GO:0048240
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process required for sperm to reach fertilization competence. Sperm undergo an incompletely understood series of morphological and molecular maturational processes, termed capacitation, involving, among other processes, protein tyrosine phosphorylation and increased intracellular calcium.","definition_xrefs":["GOC:jid","ISBN:978-3-642-58301-8","PMID:11820818"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"cellular process involved in reproduction in multicellular organism","termid":"GO:0022412"},{"relation_name":"is_a","term_name":"cell maturation","termid":"GO:0048469"},{"relation_name":"part_of","term_name":"spermatid development","termid":"GO:0007286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sperm capacitation","synonyms":[{"name":"sperm activation","type":"related"}],"termid":"GO:0048240"}


id: PBO:0075283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 24","termid":"PBO:0075283"}


id: PBO:0053299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lin-7 homolog A, crumbs cell polarity complex component","termid":"PBO:0053299"}


id: MONDO:0002728
data:
  {"annotated_genes":["SJAG_04213","SJAG_05313","SJAG_01111","SJAG_04755"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86967,86968],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012252"},{"annotations":[89141,89142],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013224"}]},"cv_name":"mondo","definition":"An aggressive malignant embryonal neoplasm usually occurring during childhood. It is characterized by the presence of large cells with abundant cytoplasm, large eccentric nucleus, and a prominent nucleolus and it is associated with abnormalities of chromosome 22. It can arise from the central nervous system, kidney, and the soft tissues. The prognosis is poor.","definition_xrefs":["NCIT:C3808"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonal neoplasm","termid":"MONDO:0005564"},{"relation_name":"is_a","term_name":"soft tissue sarcoma","termid":"MONDO:0018078"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01111":null,"SJAG_04213":null,"SJAG_04755":null,"SJAG_05313":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"rhabdoid tumor","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0206743","ONCOTREE:MRT","Orphanet:69077","NANDO:2200057","EFO:0005701","GARD:7572","DOID:3672","MEDGEN:64646","MESH:D018335","ICDO:8963/3"],"synonyms":[{"name":"malignant rhabdoid tumor","type":"exact"},{"name":"malignant rhabdoid tumour","type":"exact"},{"name":"rhabdoid cancer","type":"related"},{"name":"rhabdoid sarcoma","type":"exact"},{"name":"rhabdoid tumor","type":"exact"}],"termid":"MONDO:0002728","terms_by_termid":{"MONDO:0012252":null,"MONDO:0013224":null},"xrefs":{"Monarch":{"xref_id":"0002728"}}}


id: MOD:00560
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Other","definition_xrefs":["Unimod:209"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acrolein addition +112","synonyms":[{"name":"Acrolein addition +112","type":"related"},{"name":"Delta:H(8)C(6)O(2)","type":"related"}],"termid":"MOD:00560"}


id: PR:O74959
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A retinol dehydrogenase 13 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized oxidoreductase C736.13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC736.13","secondary_identifiers":["UniProtKB:O74959"],"synonyms":[{"name":"Spom972h-RDH13","type":"exact"}],"termid":"PR:O74959"}


id: GO:2001236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of extrinsic apoptotic signaling pathway.","definition_xrefs":["GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic signaling pathway","termid":"GO:2001233"},{"relation_name":"regulates","term_name":"extrinsic apoptotic signaling pathway","termid":"GO:0097191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of extrinsic apoptotic signaling pathway","synonyms":[{"name":"regulation of extrinsic apoptosis","type":"narrow"},{"name":"regulation of extrinsic apoptotic signalling pathway","type":"exact"}],"termid":"GO:2001236"}


id: GO:0061077
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone.","definition_xrefs":["GOC:vw","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete chaperone-mediated protein folding (obsolete GO:0061077)","termid":"GO:0061077"}


id: FYPO:0006598
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which phosphorylation of threonine at position 3 of histone H3 is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone phosphorylation during vegetative growth","termid":"FYPO:0002591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0002494","FYPO:0000002","FYPO:0005447","FYPO:0002274","FYPO:0001985"],"is_obsolete":false,"name":"decreased histone H3-T3 phosphorylation during vegetative growth","synonyms":[{"name":"decreased histone H3 phosphorylation at T3 during vegetative growth","type":"exact"},{"name":"decreased histone H3-T3 phosphorylation during mitotic cell cycle","type":"related"},{"name":"decreased histone H3-pT3 during vegetative growth","type":"related"},{"name":"decreased histone H3T3 phosphorylation during vegetative growth","type":"exact"},{"name":"reduced histone H3-T3 phosphorylation during vegetative growth","type":"exact"}],"termid":"FYPO:0006598"}


id: PBO:0109297
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"codon-optimization decreases protein concentration","termid":"PBO:0109297"}


id: MONDO:0003202
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"leukocyte disorder","termid":"MONDO:0004805"},{"relation_name":"is_a","term_name":"pituitary adenocarcinoma","termid":"MONDO:0017582"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"pituitary gland basophilic carcinoma","secondary_identifiers":["NCIT:C27392","UMLS:C1704778","MEDGEN:352901","DOID:4915"],"synonyms":[{"name":"basophil adenocarcinoma","type":"exact"},{"name":"basophil carcinoma","type":"exact"},{"name":"basophil carcinoma (morphologic abnormality)","type":"exact"},{"name":"basophilic carcinoma","type":"related"},{"name":"pituitary gland basophil carcinoma","type":"exact"}],"termid":"MONDO:0003202","xrefs":{"Monarch":{"xref_id":"0003202"}}}


id: GO:0071128
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha5-beta1 integrin complex bound to osteopontin.","definition_xrefs":["PMID:16005200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"alpha5-beta1 integrin-osteopontin complex","synonyms":[{"name":"ITGA5-ITGB1-SPP1 complex","type":"narrow"}],"termid":"GO:0071128"}


id: GO:0002229
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Reactions triggered in response to the presence of oomycetes that act to protect the cell or organism.","definition_xrefs":["PMID:16497589","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to oomycetes","termid":"GO:0002239"},{"relation_name":"is_a","term_name":"defense response","termid":"GO:0006952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"defense response to oomycetes","termid":"GO:0002229"}


id: GO:0032414
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the activity of an ion transporter.","definition_xrefs":["GOC:mah","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transporter activity","termid":"GO:0032411"},{"relation_name":"is_a","term_name":"regulation of monoatomic ion transmembrane transporter activity","termid":"GO:0032412"},{"relation_name":"is_a","term_name":"positive regulation of monoatomic ion transmembrane transport","termid":"GO:0034767"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of ion transmembrane transporter activity","synonyms":[{"name":"activation of ion transporter activity","type":"narrow"},{"name":"positive regulation of ion transporter activity","type":"exact"},{"name":"stimulation of ion transporter activity","type":"narrow"},{"name":"up regulation of ion transporter activity","type":"exact"},{"name":"up-regulation of ion transporter activity","type":"exact"},{"name":"upregulation of ion transporter activity","type":"exact"}],"termid":"GO:0032414"}


id: PBO:0056555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MCM3AP antisense RNA 1","termid":"PBO:0056555"}


id: PBO:0029216
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-altered_level_of_substance_in_cell_wall","termid":"PBO:0029216"}


id: GO:0110156
data:
  {"annotated_genes":["SJAG_03157","SJAG_01625","SJAG_05694","SJAG_04880","SJAG_01746","SJAG_02213","SJAG_05010","SJAG_03023","SJAG_02370","SJAG_04640"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93140],"is_not":false,"summary":null,"term":"GO:0110156"},{"annotations":[113858,77542,58876,81364,76150,79312],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000290"},{"annotations":[80537,77775],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031087"},{"annotations":[93490],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036450"}]},"cv_name":"biological_process","definition":"Cleavage of the 5'-methylguanosine-cap of an mRNA. The methylguanosine-cap is present at the 5'-end of eukaryotic mRNAs. Decapping inactivates translation initiation and promotes 5'-to-3' decay of mRNA.","definition_xrefs":["PMID:23287066"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA metabolic process","termid":"GO:0016071"},{"relation_name":"is_a","term_name":"RNA decapping","termid":"GO:0110154"}],"gene_count":10,"genes_by_uniquename":{"SJAG_01625":null,"SJAG_01746":null,"SJAG_02213":null,"SJAG_02370":null,"SJAG_03023":null,"SJAG_03157":null,"SJAG_04640":null,"SJAG_04880":null,"SJAG_05010":null,"SJAG_05694":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0016071"],"is_obsolete":false,"name":"mRNA methylguanosine-cap decapping","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0110156","terms_by_termid":{"GO:0000290":null,"GO:0031087":null,"GO:0036450":null,"GO:0110156":null}}


id: PBO:0089901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial cytochrome C oxidase assembly protein Mss51","termid":"PBO:0089901"}


id: PBO:0061746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear transport factor 2 like export factor 1","termid":"PBO:0061746"}


id: GO:0031498
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The controlled breakdown of chromatin from a higher order structure into its simpler subcomponents, DNA, histones, other proteins, and sometimes RNA.","definition_xrefs":["PMID:20404130"],"gene_count":0,"genotype_count":0,"name":"obsolete chromatin disassembly (obsolete GO:0031498)","synonyms":[{"name":"chromatin maintenance","type":"broad"}],"termid":"GO:0031498"}


id: GO:0102483
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: H2O + scopolin = beta-D-glucose + scopoletin.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete scopolin beta-glucosidase activity (obsolete GO:0102483)","termid":"GO:0102483"}


id: MONDO:0008296
data:
  {"annotated_genes":["SJAG_04109"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87499],"is_not":false,"summary":null,"term":"MONDO:0008296"}]},"cv_name":"mondo","definition":"An instance of porphyria cutanea tarda that is caused by an inherited modification of the individual's genome.","definition_xrefs":["MONDO:patterns/hereditary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porphyria cutanea tarda","termid":"MONDO:0015104"},{"relation_name":"is_a","term_name":"UROD-related inherited porphyria","termid":"MONDO:0100498"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04109":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019142"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0019142","MONDO:0005093","MONDO:0002515","MONDO:0004335","MONDO:0005066"],"is_obsolete":false,"name":"familial porphyria cutanea tarda","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:75669","OMIM:176100","Orphanet:443062","SCTID:59229005","UMLS:C0268323","EFO:0009043","icd11.foundation:1318287619","GARD:17750"],"synonyms":[{"name":"PCT","type":"related"},{"name":"PCT, 'familial' type","type":"related"},{"name":"PCT, type 2","type":"related"},{"name":"Urod deficiency","type":"related"},{"name":"hereditary porphyria cutanea tarda","type":"exact"},{"name":"porphyria cutanea tarda","type":"related"},{"name":"porphyria cutanea tarda type II","type":"exact"},{"name":"porphyria cutanea tarda, susceptibility to","type":"exact"},{"name":"porphyria cutanea tarda, type 2","type":"related"},{"name":"porphyria, Hepatocutaneous type","type":"related"},{"name":"porphyria, hepatoerythropoietic","type":"related"},{"name":"uroporphyrinogen decarboxylase deficiency","type":"related"}],"termid":"MONDO:0008296","terms_by_termid":{"MONDO:0008296":null},"xrefs":{"Monarch":{"xref_id":"0008296"}}}


id: PBO:0026835
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_poly(A)_polymerase_activity","termid":"PBO:0026835"}


id: PBO:0045168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member A1 pseudogene 2","termid":"PBO:0045168"}


id: PBO:0056937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7-2","termid":"PBO:0056937"}


id: PBO:0043063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHRFAM7A pseudogene 1","termid":"PBO:0043063"}


id: MONDO:0958127
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"bronchiolitis obliterans syndrome","termid":"MONDO:0015265"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transplant-related bronchiolitis obliterans","secondary_identifiers":["MEDGEN:1808244","Orphanet:658602","UMLS:C5574736"],"termid":"MONDO:0958127","xrefs":{"Monarch":{"xref_id":"0958127"}}}


id: GO:0006526
data:
  {"annotated_genes":["SJAG_00695","SJAG_00635","SJAG_01592","SJAG_00636","SJAG_04577","SJAG_00412","SJAG_01461","SJAG_00392","SJAG_01019"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104445,108353,72060,99973,112934,113762,120267,80231,112316],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042450"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arginine metabolic process","termid":"GO:0006525"},{"relation_name":"is_a","term_name":"glutamine family amino acid biosynthetic process","termid":"GO:0009084"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00392":null,"SJAG_00412":null,"SJAG_00635":null,"SJAG_00636":null,"SJAG_00695":null,"SJAG_01019":null,"SJAG_01461":null,"SJAG_01592":null,"SJAG_04577":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"L-arginine biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"arginine anabolism","type":"exact"},{"name":"arginine biosynthesis","type":"exact"},{"name":"arginine formation","type":"exact"},{"name":"arginine synthesis","type":"exact"}],"termid":"GO:0006526","terms_by_termid":{"GO:0042450":null}}


id: GO:0001626
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with the peptide nociceptin, and transmitting the signal across the membrane by activating an associated G-protein.","definition_xrefs":["PMID:18670432","GOC:bf","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled opioid receptor activity","termid":"GO:0004985"},{"relation_name":"is_a","term_name":"G protein-coupled peptide receptor activity","termid":"GO:0008528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"nociceptin receptor activity","synonyms":[{"name":"OFQ receptor activity","type":"exact"},{"name":"ORPH receptor","type":"exact"},{"name":"X-opioid receptor activity","type":"related"},{"name":"nociceptin/orphanin-FQ receptor activity","type":"exact"},{"name":"orphanin-FQ receptor activity","type":"exact"}],"termid":"GO:0001626"}


id: PBO:0012523
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-regulates_o_results_in_morphogenesis_of","termid":"PBO:0012523"}


id: PBO:0069369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 629, pseudogene","termid":"PBO:0069369"}


id: MOD:00111
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-farnesyl-L-cysteine.","definition_xrefs":["PubMed:15609361","OMSSA:42","PubMed:1409665","PubMed:1872463","PubMed:2684976","RESID:AA0102","Unimod:44#C","DeltaMass:293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"farnesylated residue","termid":"MOD:00437"},{"relation_name":"is_a","term_name":"isoprenylated cysteine","termid":"MOD:01110"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"},{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:00905","MOD:01155"],"is_obsolete":false,"name":"S-farnesyl-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-([(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]sulfanyl)propanoic acid","type":"exact"},{"name":"2-amino-3-(3,7,11-trimethyl-2,6,10-dodecatrienylthio)propanoic acid","type":"exact"},{"name":"Farnesyl","type":"related"},{"name":"Farnesylation","type":"related"},{"name":"LIPID S-farnesyl cysteine","type":"exact"},{"name":"S-farnesyl Cystenyl","type":"exact"},{"name":"S-farnesyl-L-cysteine","type":"exact"},{"name":"SFarnCys","type":"exact"},{"name":"farnesylationc","type":"exact"}],"termid":"MOD:00111"}


id: PBO:0083618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E1 beta subunit of the pyruvate dehydrogenase (PDH) complex; PDH is an evolutionarily conserved multi-protein complex found in mitochondria","termid":"PBO:0083618"}


id: PBO:0041095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRWD1 intronic transcript 1","termid":"PBO:0041095"}


id: PBO:0051333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 2-29","termid":"PBO:0051333"}


id: GO:0008558
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalyses the reaction: ATP + H2O + guanine(out) = ADP + phosphate + guanine(in).","definition_xrefs":["RHEA:20832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanine transmembrane transporter activity","termid":"GO:0015208"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"ABC-type guanine transporter activity","secondary_identifiers":["MetaCyc:3.6.3.37-RXN","EC:7.6.2.6"],"synonyms":[{"name":"ATP-dependent guanine transmembrane transporter activity","type":"related"},{"name":"ATPase-coupled guanine transmembrane transporter activity","type":"related"},{"name":"guanine ABC transporter","type":"exact"},{"name":"guanine-transporting ATPase activity","type":"related"}],"termid":"GO:0008558"}


id: MONDO:0018898
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cutaneous lymphoma is a heterogeneous entity with respect to its clinical and pathological features, evolutive profile, prognosis, molecular etiology and response to therapy. These specifications have been taken into account in recent classifications, which have placed particular importance on the prognostic implications of these different entities.","definition_xrefs":["Orphanet:542"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete rare skin tumor or hamartoma (obsolete MONDO:0019300)","termid":"MONDO:0019300"},{"relation_name":"is_a","term_name":"skin cancer","termid":"MONDO:0002898"},{"relation_name":"is_a","term_name":"primary organ-specific lymphoma","termid":"MONDO:0017207"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005570","MONDO:0004992"],"is_obsolete":false,"name":"primary cutaneous lymphoma","secondary_identifiers":["NCIT:C7162","MedDRA:10051708","GARD:18698","UMLS:C1302772","MEDGEN:220981","SCTID:400001003"],"synonyms":[{"name":"cutaneous (skin) lymphoma","type":"exact"},{"name":"primary cutaneous lymphoma","type":"exact"},{"name":"primary skin lymphoma","type":"exact"}],"termid":"MONDO:0018898","xrefs":{"Monarch":{"xref_id":"0018898"}}}


id: PBO:0041680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium dependent secretion activator","termid":"PBO:0041680"}


id: MONDO:0016143
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"sarcoglycanopathy","termid":"MONDO:0016140"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"qualitative or quantitative defects of gamma-sarcoglycan","secondary_identifiers":["GARD:20392","UMLS:C5680805","MEDGEN:1842385","Orphanet:207067"],"synonyms":[{"name":"gamma-sarcoglycanopathy","type":"narrow"}],"termid":"MONDO:0016143","xrefs":{"Monarch":{"xref_id":"0016143"}}}


id: PBO:0057902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3529","termid":"PBO:0057902"}


id: PBO:0073507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH2 domain containing 2A","termid":"PBO:0073507"}


id: PBO:0011058
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-not_occurs_in","termid":"PBO:0011058"}


id: PBO:0057650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1244-3","termid":"PBO:0057650"}


id: GO:0032279
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A type of synapse occurring between an axon and a dendritic spine or dendritic shaft. Asymmetric synapses, the most abundant synapse type in the central nervous system, involve axons that contain predominantly spherical vesicles and contain a thickened postsynaptic density. Most or all synapses of this type are excitatory.","definition_xrefs":["GOC:dgh","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron to neuron synapse","termid":"GO:0098984"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"asymmetric synapse","synonyms":[{"name":"Gray's type I synapse","type":"exact"}],"termid":"GO:0032279"}


id: MONDO:0024491
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A morphologic qualifier indicating that a cancerous lesion is well differentiated.","definition_xrefs":["NCIT:C28077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tumor grade 1 or 2, general grading system","termid":"MONDO:0024495"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor grade 1, general grading system","secondary_identifiers":["MEDGEN:634565","UMLS:C0475269"],"synonyms":[{"name":"G1","type":"exact"},{"name":"grade 1","type":"exact"},{"name":"grade I","type":"exact"},{"name":"low grade","type":"exact"},{"name":"well differentiated","type":"exact"}],"termid":"MONDO:0024491","xrefs":{"Monarch":{"xref_id":"0024491"}}}


id: GO:0009738
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription.","definition_xrefs":["PMID:24269821","GOC:signaling","GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone-mediated signaling pathway","termid":"GO:0009755"},{"relation_name":"part_of","term_name":"cellular response to abscisic acid stimulus","termid":"GO:0071215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"abscisic acid-activated signaling pathway","synonyms":[{"name":"ABA signal transduction","type":"exact"},{"name":"ABA signaling","type":"exact"},{"name":"abscisic acid mediated signalling","type":"exact"},{"name":"abscisic acid signal transduction","type":"related"},{"name":"abscisic acid-mediated signaling pathway","type":"related"}],"termid":"GO:0009738"}


id: PBO:0113565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligosaccharyltransferase complex zeta subunit, Ost5","termid":"PBO:0113565"}


id: PBO:0066541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of G protein signaling 6","termid":"PBO:0066541"}


id: MONDO:0018847
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"abdominal wall malformation","termid":"MONDO:0100298"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"omphalomesenteric cyst","secondary_identifiers":["SCTID:80880002","MEDGEN:120570","UMLS:C0266180","GARD:4081","Orphanet:490"],"termid":"MONDO:0018847","xrefs":{"Monarch":{"xref_id":"0018847"}}}


id: GO:0047652
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: allantoate + H2O + H+ = CO2 + NH3 + ureidoglycine.","definition_xrefs":["EC:3.5.3.9","MetaCyc:ALLANTOATE-DEIMINASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0016810"],"is_obsolete":false,"name":"allantoate deiminase activity","secondary_identifiers":["RHEA:27485"],"synonyms":[{"name":"allantoate amidinohydrolase (decarboxylating)","type":"related"},{"name":"allantoate amidohydrolase activity","type":"related"}],"termid":"GO:0047652"}


id: PBO:0040236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activating transcription factor 6 beta","termid":"PBO:0040236"}


id: MONDO:0023137
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"feigenbaum Bergeron syndrome","termid":"MONDO:0023137","xrefs":{"Monarch":{"xref_id":"0023137"}}}


id: GO:0007141
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cell cycle process comprising the steps by which a cell progresses through male meiosis I, the first meiotic division in the male germline.","definition_xrefs":["GOC:mah","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiosis I","termid":"GO:0007127"},{"relation_name":"is_a","term_name":"male meiotic nuclear division","termid":"GO:0007140"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0140013","GO:0007049"],"is_obsolete":false,"name":"male meiosis I","synonyms":[{"name":"male meiosis I nuclear division","type":"exact"}],"termid":"GO:0007141"}


id: GO:0042150
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process of DNA recombination occurring within a plasmid or between plasmids and other plasmids or DNA molecules.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA recombination","termid":"GO:0006310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006310","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"plasmid recombination","termid":"GO:0042150"}


id: SO:0001918
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A cytosine methylated at the 5 carbon.","definition_xrefs":["SO:rtapella"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated_cytosine","termid":"SO:0000114"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5_methylcytosine","secondary_identifiers":["http://www.insdc.org/files/feature_table.html#7.4.2","http:http\\://www.pacificbiosciences.com/pdf/WP_Detecting_DNA_Base_Modifications_Using_SMRT_Sequencing.pdf"],"synonyms":[{"name":"5 methylcytosine","type":"exact"},{"name":"5-mC","type":"exact"},{"name":"m-5C","type":"exact"},{"name":"m5c","type":"exact"}],"termid":"SO:0001918"}


id: PR:O74890
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tyrosine--tRNA ligase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04935","PANTHER:PTHR11766:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine--tRNA ligase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC576.06c","secondary_identifiers":["UniProtKB:O74890"],"synonyms":[{"name":"Spom972h-YARS2","type":"exact"},{"name":"TyrRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tyrosyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74890"}


id: GO:0140474
data:
  {"annotated_genes":["SJAG_04370","SJAG_03710","SJAG_03416","SJAG_01305"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[92718,107681,109362,109487],"is_not":false,"summary":null,"term":"GO:0140474"}]},"cv_name":"molecular_function","definition":"The binding activity of a molecule that brings together a mitochondrion and an ER membrane either via membrane lipid binding or by interacting with a mitochondrial outer membrane protein, to establish or maintain the localization of the mitochondrion.","definition_xrefs":["PMID:27875684","PMID:19556461"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum-organelle membrane tether activity","termid":"GO:0170009"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01305":null,"SJAG_03416":null,"SJAG_03710":null,"SJAG_04370":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0030674"}],"interesting_parent_ids":["GO:0003674","GO:0060090","GO:0030674"],"is_obsolete":false,"name":"mitochondrion-endoplasmic reticulum membrane tether activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ER-mitochondrion membrane adaptor activity","type":"exact"},{"name":"ER-mitochondrion membrane tether activity","type":"exact"},{"name":"endoplasmic reticulum-mitochondrion membrane adaptor activity","type":"exact"},{"name":"endoplasmic reticulum-mitochondrion membrane tether activity","type":"exact"},{"name":"mitochondrion-ER membrane adaptor activity","type":"exact"},{"name":"mitochondrion-ER membrane tether activity","type":"exact"},{"name":"mitochondrion-endoplasmic reticulum membrane adaptor activity","type":"exact"}],"termid":"GO:0140474","terms_by_termid":{"GO:0140474":null}}


id: PBO:0068806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 43, pseudogene","termid":"PBO:0068806"}


id: MONDO:0032886
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Liang-Wang syndrome","secondary_identifiers":["MEDGEN:1684847","OMIM:618729","Orphanet:664438","UMLS:C5231479"],"synonyms":[{"name":"LIANG-WANG SYNDROME","type":"related"},{"name":"LIWAS","type":"related"}],"termid":"MONDO:0032886","xrefs":{"Monarch":{"xref_id":"0032886"}}}


id: PBO:0077198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane 4 L six family member 4","termid":"PBO:0077198"}


id: PBO:0004980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5.8S ribosomal RNA","termid":"PBO:0004980"}


id: PBO:0029929
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_IMP_binding","termid":"PBO:0029929"}


id: PBO:0089615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"post-Golgi vesicle-mediated transport protein Avl9","termid":"PBO:0089615"}


id: PBO:0070356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 29","termid":"PBO:0070356"}


id: GO:0006753
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id: PR:O13801
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nrp1 gene.","definition_xrefs":["UniProtKB:O13801","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized RNA-binding protein C17H9.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17H9.04c","synonyms":[{"name":"Spom972h-nrp1","type":"exact"}],"termid":"PR:O13801"}


id: PBO:0070584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 50","termid":"PBO:0070584"}


id: PBO:0030575
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_vacuolar_isoleucine_level","termid":"PBO:0030575"}


id: SO:0000096
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene from proplastid sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"proplastid_sequence","termid":"SO:0000748"},{"relation_name":"is_a","term_name":"plastid_gene","termid":"SO:0000090"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proplastid_gene","synonyms":[{"name":"proplastid gene","type":"exact"}],"termid":"SO:0000096"}


id: PBO:0110354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DBF4 pseudogene 1","termid":"PBO:0110354"}


id: PBO:0045925
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EGF containing fibulin extracellular matrix protein 1","termid":"PBO:0045925"}


id: MONDO:0002536
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign papillary neoplastic growth on the skin composed of epithelial cells and a fibrous stalk. It usually develops in the eyelid, axilla, neck, upper chest, and groin.","definition_xrefs":["NCIT:C4614"],"direct_ancestors":[{"relation_name":"is_a","term_name":"papilloma","termid":"MONDO:0002363"},{"relation_name":"is_a","term_name":"benign epithelial skin neoplasm","termid":"MONDO:0024666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"skin papilloma","secondary_identifiers":["SCTID:255184001","DOID:3178","MEDGEN:91127","UMLS:C0347390"],"synonyms":[{"name":"basosquamous tumor, benign","type":"exact"},{"name":"cutaneous papilloma","type":"exact"},{"name":"papilloma of skin","type":"exact"},{"name":"papilloma of the skin","type":"exact"},{"name":"skin papilloma","type":"exact"},{"name":"zone of skin papilloma","type":"exact"}],"termid":"MONDO:0002536","xrefs":{"Monarch":{"xref_id":"0002536"}}}


id: PBO:0114382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane carboxylic acid transmembrane transporter Tna1","termid":"PBO:0114382"}


id: MONDO:0014865
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive severe congenital neutropenia","termid":"MONDO:0028226"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"autosomal recessive severe congenital neutropenia due to CSF3R deficiency","secondary_identifiers":["MEDGEN:934731","OMIM:617014","Orphanet:420702","UMLS:C4310764","DOID:0112129","GARD:17698"],"synonyms":[{"name":"SCN7","type":"related"},{"name":"neutropenia, Severe congenital, 7, autosomal recessive","type":"exact"},{"name":"neutropenia, severe congenital, 7, autosomal recessive","type":"related"}],"termid":"MONDO:0014865","xrefs":{"Monarch":{"xref_id":"0014865"}}}


id: MONDO:0019556
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pressure-induced localized lipoatrophy is a rare, acquired, localized lipodystrophy characterized by band-like, horizontal, asymptomatic, lipoatrophic depressions with clinically normal overlying skin usually involving the anterolateral aspect of the thighs. An identifiable history of the repeated mechanical microtrauma due to occupational or postural habits is present.","definition_xrefs":["Orphanet:90160"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localized lipodystrophy","termid":"MONDO:0019194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005066"],"is_obsolete":false,"name":"pressure-induced localized lipoatrophy","secondary_identifiers":["MEDGEN:687584","UMLS:C1260961","SCTID:238898001","GARD:19129"],"synonyms":[{"name":"lipoatrophia semicircularis","type":"exact"},{"name":"semicircular lipoatrophy","type":"exact"}],"termid":"MONDO:0019556","xrefs":{"Monarch":{"xref_id":"0019556"}}}


id: PBO:0088787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F1-FO ATP synthase subunit G","termid":"PBO:0088787"}


id: PBO:0045144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein axonemal heavy chain 1","termid":"PBO:0045144"}


id: PBO:0067936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 238","termid":"PBO:0067936"}


id: MONDO:0002590
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"thymoma","termid":"MONDO:0006456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"combined thymoma","secondary_identifiers":["DOID:3281","NCIT:C45722","UMLS:C1707449","MEDGEN:317530"],"termid":"MONDO:0002590","xrefs":{"Monarch":{"xref_id":"0002590"}}}


id: PATO:0001300
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"electromagnetic (EM) radiation quality","termid":"PATO:0001291"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"optical quality","termid":"PATO:0001300"}


id: PBO:0083397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps ORFs YPR169W-A and YPR170W-B","termid":"PBO:0083397"}


id: PBO:0050682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member 8 pseudogene 9","termid":"PBO:0050682"}


id: GO:0016912
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete SAP kinase 5 activity (obsolete GO:0016912)","synonyms":[{"name":"SAP kinase 5 activity","type":"exact"},{"name":"SAPK5","type":"exact"}],"termid":"GO:0016912"}


id: GO:0006334
data:
  {"annotated_genes":["SJAG_04257","SJAG_02198","SJAG_02906","SJAG_00170","SJAG_02314","SJAG_00303","SJAG_00336","SJAG_00942","SJAG_03542","SJAG_04272"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[63012,71611,74755,75008,80611,92927,92928,98267,109567,116403],"is_not":false,"summary":null,"term":"GO:0006334"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleosome organization","termid":"GO:0034728"},{"relation_name":"is_a","term_name":"protein-DNA complex assembly","termid":"GO:0065004"},{"relation_name":"part_of","term_name":"chromatin organization","termid":"GO:0006325"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00170":null,"SJAG_00303":null,"SJAG_00336":null,"SJAG_00942":null,"SJAG_02198":null,"SJAG_02314":null,"SJAG_02906":null,"SJAG_03542":null,"SJAG_04257":null,"SJAG_04272":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006325"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085","GO:0006325"],"is_obsolete":false,"name":"nucleosome assembly","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-774815"],"synonyms":[{"name":"histone chaperone","type":"related"},{"name":"nucleosome modeling","type":"exact"}],"termid":"GO:0006334","terms_by_termid":{"GO:0006334":null}}


id: PR:P79007
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- php5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P79007"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional activator hap5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3B8.02","synonyms":[{"name":"Spom972h-php5","type":"exact"}],"termid":"PR:P79007"}


id: PBO:0027538
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_response_to_S-phase_DNA_damage_checkpoint_signaling","termid":"PBO:0027538"}


id: PBO:0049480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H1.4 linker histone, cluster member","termid":"PBO:0049480"}


id: FYPO:0007858
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which a cell undergoes one or more rounds of rereplication of the entire genome without forming a mitotic spindle or undergoing cytokinesis.","definition_xrefs":["PomBase:mah","PMID:20967237"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal negative regulation of mitotic DNA replication initiation resulting in complete rereplication","termid":"FYPO:0001425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"mitotic DNA re-replication in absence of mitotic spindle","synonyms":[{"name":"abnormal negative regulation of mitotic DNA replication initiation resulting in complete rereplication in absence of mitotic spindle","type":"exact"},{"name":"abnormal negative regulation of mitotic DNA replication initiation resulting in complete rereplication in absence of mitotic spindle during mitotic cell cycle","type":"related"},{"name":"abnormal negative regulation of mitotic DNA replication initiation resulting in complete rereplication in absence of mitotic spindle during vegetative growth","type":"exact"},{"name":"mitotic DNA re-replication in the absence of normal mitotic spindle assembly and cytokinesis","type":"exact"}],"termid":"FYPO:0007858"}


id: PBO:0081916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 885, pseudogene","termid":"PBO:0081916"}


id: MONDO:0021221
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm (disease) that involves the vestibulocochlear nerve.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vestibulocochlear nerve disorder","termid":"MONDO:0001563"},{"relation_name":"is_a","term_name":"cranial nerve neoplasm","termid":"MONDO:0002633"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vestibulocochlear nerve neoplasm","secondary_identifiers":["NCIT:C5120","UMLS:C0346330","MEDGEN:91099","SCTID:387891008"],"synonyms":[{"name":"Vestibuloacoustic nerve neoplasms","type":"exact"},{"name":"acoustic nerve neoplasm","type":"exact"},{"name":"acoustic nerve tumor","type":"exact"},{"name":"acoustic nerve tumour","type":"exact"},{"name":"cranial nerve eight neoplasms","type":"exact"},{"name":"eighth cranial nerve neoplasm","type":"exact"},{"name":"eighth cranial nerve neoplasms","type":"exact"},{"name":"eighth cranial nerve tumor","type":"exact"},{"name":"eighth cranial nerve tumour","type":"exact"},{"name":"neoplasm of acoustic nerve","type":"exact"},{"name":"neoplasm of eighth cranial nerve","type":"exact"},{"name":"neoplasm of the acoustic nerve","type":"exact"},{"name":"neoplasm of the eighth cranial nerve","type":"exact"},{"name":"neoplasm of the vestibulocochlear nerve","type":"exact"},{"name":"neoplasm of vestibulocochlear nerve","type":"exact"},{"name":"tumor of acoustic nerve","type":"exact"},{"name":"tumor of eighth cranial nerve","type":"exact"},{"name":"tumor of the acoustic nerve","type":"exact"},{"name":"tumor of the eighth cranial nerve","type":"exact"},{"name":"tumor of the vestibulocochlear nerve","type":"exact"},{"name":"tumor of vestibulocochlear nerve","type":"exact"},{"name":"tumour of acoustic nerve","type":"exact"},{"name":"tumour of eighth cranial nerve","type":"exact"},{"name":"tumour of the acoustic nerve","type":"exact"},{"name":"tumour of the eighth cranial nerve","type":"exact"},{"name":"tumour of the vestibulocochlear nerve","type":"exact"},{"name":"tumour of vestibulocochlear nerve","type":"exact"},{"name":"vestibulocochlear nerve neoplasm (disease)","type":"exact"},{"name":"vestibulocochlear nerve neoplasms","type":"exact"},{"name":"vestibulocochlear nerve tumor","type":"exact"},{"name":"vestibulocochlear nerve tumour","type":"exact"}],"termid":"MONDO:0021221","xrefs":{"Monarch":{"xref_id":"0021221"}}}


id: GO:0070087
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a chromo shadow domain, a protein domain that is distantly related, and found in association with, the chromo domain.","definition_xrefs":["GOC:BHF","InterPro:IPR008251","PMID:7667093","GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"chromo shadow domain binding","synonyms":[{"name":"chromoshadow domain binding","type":"exact"}],"termid":"GO:0070087"}


id: MONDO:0957807
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hyper-IgE syndrome","termid":"MONDO:0018037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"hyper-IgE syndrome 6, autosomal dominant, with recurrent infections","secondary_identifiers":["MEDGEN:1851769","OMIM:620532","UMLS:C5848786"],"termid":"MONDO:0957807","xrefs":{"Monarch":{"xref_id":"0957807"}}}


id: PBO:0047935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, folic acid type, rare, fra(12)(q24.13)","termid":"PBO:0047935"}


id: GO:0050359
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + tropomyosin = ADP + O-phosphotropomyosin.","definition_xrefs":["MetaCyc:TROPOMYOSIN-KINASE-RXN"],"gene_count":0,"genotype_count":0,"name":"obsolete tropomyosin kinase activity (obsolete GO:0050359)","synonyms":[{"name":"ATP:tropomyosin O-phosphotransferase activity","type":"related"},{"name":"STK","type":"related"},{"name":"tropomyosin kinase (phosphorylating) activity","type":"related"}],"termid":"GO:0050359"}


id: PBO:0028504
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_phosphodiesterase_I_activity","termid":"PBO:0028504"}


id: PBO:0062157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily H member 6B pseudogene","termid":"PBO:0062157"}


id: GO:2001095
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a mannotrioseacetate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trisaccharide transport","termid":"GO:2001088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"mannotriose transport","termid":"GO:2001095"}


id: MONDO:0001144
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"paralytic strabismus","termid":"MONDO:0001143"},{"relation_name":"is_a","term_name":"oculomotor nerve paralysis","termid":"MONDO:0001309"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial third-nerve palsy","secondary_identifiers":["ICD9:378.51","MEDGEN:75745","UMLS:C0271370","DOID:10864","SCTID:194118007"],"synonyms":[{"name":"partial third nerve palsy","type":"exact"},{"name":"third nerve palsy with pupil sparing","type":"exact"},{"name":"third or oculomotor nerve palsy, partial","type":"exact"}],"termid":"MONDO:0001144","xrefs":{"Monarch":{"xref_id":"0001144"}}}


id: GO:0086081
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein or protein complex that results in the connection of an atrial cardiomyocyte with an AV node cell and contributes to the communication between the two cells.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding involved in heterotypic cell-cell adhesion","termid":"GO:0086080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0098631"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0098631","GO:0005515"],"is_obsolete":false,"name":"cell adhesive protein binding involved in atrial cardiac muscle cell-AV node cell communication","synonyms":[{"name":"cell adhesive protein binding involved in atrial cardiomyocyte-AV node cell communication","type":"exact"},{"name":"cell adhesive protein binding involved in atrial cardiomyocyte-atrioventricular node cell communication","type":"exact"}],"termid":"GO:0086081"}


id: PBO:0002780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pig-U (predicted)","termid":"PBO:0002780"}


id: PBO:0040686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCAS3 microtubule associated cell migration factor","termid":"PBO:0040686"}


id: MOD:01531
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces the O4'-hydrogen atom of a tyrosine residue with the Applied Biosystems iTRAQ8plex-113 reporter+balance group.","definition_xrefs":["Unimod:730#Y"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"iTRAQ8plex-113 reporter+balance reagent acylated residue","termid":"MOD:01528"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent O-acylated residue","termid":"MOD:01714"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ8plex-113 reporter+balance reagent O4'-acylated tyrosine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"Representative mass and accurate mass for 113, 114, 116 & 117","type":"related"},{"name":"iTRAQ8plex","type":"related"},{"name":"iTRAQ8plex:13C(7)15N(1)","type":"related"}],"termid":"MOD:01531"}


id: PBO:0072731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S1PR1 divergent transcript","termid":"PBO:0072731"}


id: FYPO:0004828
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is normal (i.e. indistinguishable from wild type) during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to nucleus during vegetative growth","termid":"FYPO:0000838"},{"relation_name":"is_a","term_name":"normal protein localization during mitosis","termid":"FYPO:0004328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001312","FYPO:0000257","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to nucleus during mitosis","synonyms":[{"name":"normal protein localisation to nucleus during mitosis","type":"exact"},{"name":"normal protein localization to nucleus during mitosis during vegetative growth","type":"exact"},{"name":"normal protein localization to nucleus during mitotic M phase","type":"related"},{"name":"normal protein localization to nucleus during mitotic nuclear division","type":"exact"}],"termid":"FYPO:0004828"}


id: PBO:0011093
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lesch-Nyhan syndrome","termid":"PBO:0011093"}


id: MONDO:1010094
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Analphalipoproteinaemia that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn errors of metabolism, non-human animal","termid":"MONDO:1012979"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"analphalipoproteinaemia, non-human animal","secondary_identifiers":["OMIA:000042"],"termid":"MONDO:1010094","xrefs":{"Monarch":{"xref_id":"1010094"}}}


id: PBO:0003816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCAAT-binding factor complex subunit Php4","termid":"PBO:0003816"}


id: PATO:0001789
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A curvature quality inhering in a bearer by virtue of the bearer's having a shape resembling a dome.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"curved","termid":"PATO:0000406"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"domed","termid":"PATO:0001789"}


id: GO:0072535
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of tumor necrosis factor superfamily member 11 (TNFSF11; RANKL) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tumor necrosis factor superfamily cytokine production","termid":"GO:0071706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"tumor necrosis factor (ligand) superfamily member 11 production","synonyms":[{"name":"RANKL production","type":"exact"},{"name":"TNFSF11 production","type":"exact"},{"name":"tumor necrosis factor ligand superfamily member 11 production","type":"exact"}],"termid":"GO:0072535"}


id: PBO:0047020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A23","termid":"PBO:0047020"}


id: MONDO:0000639
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cancer involving a cartilage tissue.","definition_xrefs":["MONDO:patterns/cancer"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone cancer","termid":"MONDO:0002129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"cartilage cancer","secondary_identifiers":["DOID:0060102","GARD:6004","MEDGEN:1843449","UMLS:C4290064"],"synonyms":[{"name":"cancer of cartilage tissue","type":"exact"},{"name":"cartilage tissue cancer","type":"exact"},{"name":"cartilaginous cancer","type":"exact"},{"name":"malignant cartilage tissue neoplasm","type":"exact"},{"name":"malignant neoplasm of cartilage tissue","type":"exact"}],"termid":"MONDO:0000639","xrefs":{"Monarch":{"xref_id":"0000639"}}}


id: PBO:0085941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; mutant phenotype suggests a potential role in vacuolar function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery, cytoplasm, bud, and bud neck; relocalizes from bud neck to cytoplasm upon DNA replication stress; SVL3 has a paralog, PAM1, that arose from the whole genome duplication","termid":"PBO:0085941"}


id: GO:0003937
data:
  {"annotated_genes":["SJAG_04681"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71659],"is_not":false,"summary":null,"term":"GO:0003937"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: IMP + H2O = 5-formamido-1-(5-phosphoribosyl)imidazole-4-carboxamide.","definition_xrefs":["EC:3.5.4.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclohydrolase activity","termid":"GO:0019238"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04681":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0016810","GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"IMP cyclohydrolase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["RHEA:18445","MetaCyc:IMPCYCLOHYDROLASE-RXN","Reactome:R-HSA-73797"],"synonyms":[{"name":"IMP 1,2-hydrolase (decyclizing)","type":"related"},{"name":"IMP synthetase activity","type":"related"},{"name":"inosinate cyclohydrolase activity","type":"related"},{"name":"inosinicase activity","type":"related"}],"termid":"GO:0003937","terms_by_termid":{"GO:0003937":null}}


id: MONDO:0008207
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial chondromalacia patellae is an inherited bone disorder described in 5 families in 1963 and is characterized by localized patellar pain and male-to-male transmission.","definition_xrefs":["Orphanet:1428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chondromalacia","termid":"MONDO:0002342"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondromalacia patellae","secondary_identifiers":["ICD10CM:M22.4","MESH:D046789","icd11.foundation:1589625540","OMIM:168900","UMLS:C0008475","DOID:13357","SCTID:36071006","ICD9:717.7","MEDGEN:939"],"synonyms":[{"name":"chondromalacia of patella","type":"exact"},{"name":"chondromalacia patellae","type":"exact"},{"name":"familial chondromalacia patellae","type":"related"},{"name":"patella chondromalacia","type":"exact"},{"name":"patella, chondromalacia OF","type":"related"},{"name":"softening of articular cartilage of patella","type":"exact"}],"termid":"MONDO:0008207","xrefs":{"Monarch":{"xref_id":"0008207"}}}


id: PBO:0031767
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_antimycin_A","termid":"PBO:0031767"}


id: PBO:0053588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 613","termid":"PBO:0053588"}


id: PBO:0042910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cofilin 1 pseudogene 7","termid":"PBO:0042910"}


id: PBO:0068202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 509","termid":"PBO:0068202"}


id: FYPO:0003114
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of nitric oxide measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular reactive oxygen species level during vegetative growth","termid":"FYPO:0003004"},{"relation_name":"is_a","term_name":"altered cellular nitric oxide level","termid":"FYPO:0006408"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular nitric oxide level during vegetative growth","synonyms":[{"name":"increased cellular NO level during vegetative growth","type":"exact"},{"name":"increased cellular nitric oxide level during mitotic cell cycle","type":"related"},{"name":"increased nitric oxide accumulation during vegetative growth","type":"related"}],"termid":"FYPO:0003114"}


id: PBO:0079777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP-glucose glycoprotein glucosyltransferase 2","termid":"PBO:0079777"}


id: GO:0004958
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with prostaglandin F (PGF (2-alpha)) to initiate a change in cell activity.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prostaglandin receptor activity","termid":"GO:0004955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"prostaglandin F receptor activity","synonyms":[{"name":"PGF receptor activity","type":"related"},{"name":"PGF(2-alpha) receptor activity","type":"exact"}],"termid":"GO:0004958"}


id: SO:0100008
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif of five consecutive residues and two H-bonds in which: H-bond between CO of residue(i) and NH of residue(i+4), H-bond between CO of residue(i) and NH of residue(i+3),Phi angles of residues(i+1), (i+2) and (i+3) are negative.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_secondary_structure","termid":"SO:0001078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"alpha_beta_motif","synonyms":[{"name":"alpha beta motif","type":"exact"}],"termid":"SO:0100008"}


id: FYPO:0004383
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle begins earlier than normal.","definition_xrefs":["PomBase:mah","PMID:20935472"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to mitotic spindle","termid":"FYPO:0002824"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"premature protein localization to mitotic spindle","synonyms":[{"name":"advanced protein localization to mitotic spindle","type":"exact"},{"name":"precocious protein localization to mitotic spindle","type":"related"},{"name":"premature protein localisation to mitotic spindle","type":"exact"},{"name":"premature protein localization to mitotic spindle during mitotic cell cycle","type":"related"},{"name":"premature protein localization to spindle during mitosis","type":"exact"},{"name":"premature protein localization to spindle during vegetative growth","type":"exact"}],"termid":"FYPO:0004383"}


id: PBO:0066145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBBP4 pseudogene 1","termid":"PBO:0066145"}


id: MONDO:0044777
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited primary ovarian failure","termid":"MONDO:0019852"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"premature ovarian failure 14","secondary_identifiers":["OMIM:618014","GTR:AN1172965","DOID:0080871","MEDGEN:1646133","UMLS:C4693941"],"synonyms":[{"name":"GDF9-related primary ovarian insufficiency","type":"related"},{"name":"POF14","type":"related"},{"name":"premature ovarian failure 14","type":"exact"}],"termid":"MONDO:0044777","xrefs":{"Monarch":{"xref_id":"0044777"}}}


id: FYPO:0007968
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An inviable phenotype observed in the vegetative growth phase of the life cycle after normal chromosome separation in which pushing forces exerted by microtubules protruding from the spindle pole bodies displace one of the daughter nuclei to the site of cytokinesis. The septum then physically divides that nucleus into two parts, giving rise to inviable daughter cell.","definition_xrefs":["PomBase:vw","PMID:26031557","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cut following normal mitotic chromosome condensation","termid":"FYPO:0001055"},{"relation_name":"output_of","term_name":"long mitotic spindle microtubules protruding beyond spindle pole body","termid":"FYPO:0003787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0002399"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000120"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"has_part","termid":"FYPO:0000641"},{"rel_name":"has_part","termid":"FYPO:0000337"},{"rel_name":"output_of","termid":"FYPO:0002403"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002399","FYPO:0000002","FYPO:0000004","FYPO:0000120","FYPO:0000337","FYPO:0002403","FYPO:0001985","FYPO:0000641","FYPO:0001320","FYPO:0000032","FYPO:0000631"],"is_obsolete":false,"name":"cut with mitotic spindle microtubules protruding beyond spindle pole body","termid":"FYPO:0007968"}


id: PBO:0029777
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_branched,_elongated_vegetative_cell","termid":"PBO:0029777"}


id: GO:1902902
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of autophagosome assembly.","definition_xrefs":["GOC:TermGenie","GOC:als","PMID:21975012","GO_REF:0000058","GOC:autophagy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of macroautophagy","termid":"GO:0016242"},{"relation_name":"is_a","term_name":"negative regulation of organelle assembly","termid":"GO:1902116"},{"relation_name":"is_a","term_name":"regulation of autophagosome assembly","termid":"GO:2000785"},{"relation_name":"negatively_regulates","term_name":"autophagosome assembly","termid":"GO:0000045"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"negatively_regulates","termid":"GO:0006914"}],"interesting_parent_ids":["GO:0006914","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"negative regulation of autophagosome assembly","synonyms":[{"name":"down regulation of PAS formation","type":"narrow"},{"name":"down regulation of autophagic vacuole assembly","type":"exact"},{"name":"down regulation of autophagic vacuole formation","type":"related"},{"name":"down regulation of autophagosome biosynthesis","type":"exact"},{"name":"down regulation of autophagosome formation","type":"exact"},{"name":"down-regulation of PAS formation","type":"narrow"},{"name":"down-regulation of autophagic vacuole assembly","type":"exact"},{"name":"down-regulation of autophagic vacuole formation","type":"related"},{"name":"down-regulation of autophagosome biosynthesis","type":"exact"},{"name":"down-regulation of autophagosome formation","type":"exact"},{"name":"downregulation of PAS formation","type":"narrow"},{"name":"downregulation of autophagic vacuole assembly","type":"exact"},{"name":"downregulation of autophagic vacuole formation","type":"related"},{"name":"downregulation of autophagosome biosynthesis","type":"exact"},{"name":"downregulation of autophagosome formation","type":"exact"},{"name":"inhibition of PAS formation","type":"narrow"},{"name":"inhibition of autophagic vacuole assembly","type":"narrow"},{"name":"inhibition of autophagic vacuole formation","type":"related"},{"name":"inhibition of autophagosome biosynthesis","type":"narrow"},{"name":"inhibition of autophagosome formation","type":"narrow"},{"name":"negative regulation of PAS formation","type":"narrow"},{"name":"negative regulation of autophagic vacuole assembly","type":"exact"},{"name":"negative regulation of autophagic vacuole formation","type":"related"},{"name":"negative regulation of autophagosome biosynthesis","type":"exact"},{"name":"negative regulation of autophagosome formation","type":"exact"}],"termid":"GO:1902902"}


id: MONDO:0020132
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete non-syndromic central nervous system malformation (obsolete MONDO:0015219)","termid":"MONDO:0015219"}],"gene_count":0,"genotype_count":0,"name":"obsolete cranial nerve and nuclear aplasia (obsolete MONDO:0020132)","secondary_identifiers":["Orphanet:98518"],"termid":"MONDO:0020132","xrefs":{"Monarch":{"xref_id":"0020132"}}}


id: PBO:0088316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved membrane protein with Rossmann-like alpha/beta/alpha sandwich fold, conserved in fungi and protozoa","termid":"PBO:0088316"}


id: PBO:0085407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane protein with a role in cell wall integrity; co-localizes with Sur7p in punctate membrane patches; null mutant displays decreased thermotolerance; transcription induced upon cell wall damage and metal ion stress","termid":"PBO:0085407"}


id: PBO:0087385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sterol regulatory element binding protein; regulates transcription of sterol biosynthetic genes upon sterol depletion, after relocating from intracellular membranes to perinuclear foci; redundant activator of filamentation with UPC2, up-regulating the expression of genes involved in filamentous growth; contains Zn[2]-Cys[6] binuclear cluster; ECM22 has a paralog, UPC2, that arose from the whole genome duplication","termid":"PBO:0087385"}


