# terms

id: FYPO:0000310
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a normal germ tube, but does not go on to form a viable dividing cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division","termid":"FYPO:0001991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, with normal germ tube morphology","synonyms":[{"name":"inviable after spore germination, undivided cell with normal germ tube morphology","type":"exact"},{"name":"inviable following spore germination, without cell division, with normal germ tube morphology","type":"exact"},{"name":"inviable germinated spore, without cell division, with normal germ tube morphology","type":"exact"},{"name":"lethal after spore germination, without cell division, with normal germ tube morphology","type":"exact"}],"termid":"FYPO:0000310"}


id: PBO:0049725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HAUS augmin like complex subunit 6 pseudogene 3","termid":"PBO:0049725"}


id: MONDO:1012683
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any X-linked chondrodysplasia characterized by spondylosis and arthrosis that occurs in dogs.","definition_xrefs":["PMID:17212747"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteochondrodysplasia, dog","termid":"MONDO:1011194"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spondylo-epiphyseal dysplasia tarda, X-linked, dog","secondary_identifiers":["OMIA:001448-9615"],"synonyms":[{"name":"spondyloepiphyseal dysplasia, congenital type, dog","type":"related"}],"termid":"MONDO:1012683","xrefs":{"Monarch":{"xref_id":"1012683"}}}


id: PR:O94669
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- apm3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94669"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AP-3 complex subunit mu (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC651.11c","synonyms":[{"name":"Spom972h-apm3","type":"exact"},{"name":"adaptor-related protein complex 3 subunit mu (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94669"}


id: PBO:0077195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TM2 domain containing 3","termid":"PBO:0077195"}


id: GO:2001250
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ammonia assimilation cycle.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nitrogen utilization","termid":"GO:0045848"},{"relation_name":"is_a","term_name":"positive regulation of glutamate metabolic process","termid":"GO:2000213"},{"relation_name":"is_a","term_name":"regulation of ammonia assimilation cycle","termid":"GO:2001248"},{"relation_name":"positively_regulates","term_name":"ammonia assimilation cycle","termid":"GO:0019676"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0006520"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"positive regulation of ammonia assimilation cycle","synonyms":[{"name":"positive regulation of glutamate metabolic process via glutamine and ammonia","type":"exact"},{"name":"positive regulation of glutamate metabolism via glutamine and ammonia","type":"exact"}],"termid":"GO:2001250"}


id: PBO:0077123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIMP metallopeptidase inhibitor 2","termid":"PBO:0077123"}


id: PBO:0070975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18 pseudogene 13","termid":"PBO:0070975"}


id: PBO:0048559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDNF family receptor alpha 4","termid":"PBO:0048559"}


id: GO:0043947
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of symbiont enzyme activity. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by host of symbiont catalytic activity (obsolete GO:0043947)","synonyms":[{"name":"activation by host of symbiont enzyme activity","type":"narrow"},{"name":"activation of symbiont enzyme activity","type":"narrow"},{"name":"positive regulation by host of symbiont enzyme activity","type":"exact"},{"name":"up regulation by host of symbiont enzyme activity","type":"exact"},{"name":"up-regulation by host of symbiont enzyme activity","type":"exact"},{"name":"upregulation by host of symbiont enzyme activity","type":"exact"}],"termid":"GO:0043947"}


id: GO:0022018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of lateral ganglionic eminence cells, resulting in the expansion of the cell population.","definition_xrefs":["GOC:jid","GOC:dgh","GO_REF:0000021","GOC:cls","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"subpallium cell proliferation in forebrain","termid":"GO:0022012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lateral ganglionic eminence cell proliferation","termid":"GO:0022018"}


id: MONDO:0006170
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any disorder of the conjunctiva.","definition_xrefs":["NCIT:C27605"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye adnexa disorder","termid":"MONDO:0000462"},{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"conjunctival disorder","secondary_identifiers":["EFO:1000203","ICD10CM:H10-H11","DOID:4251","MEDGEN:3207","UMLS:C0009759"],"synonyms":[{"name":"conjunctiva disease","type":"exact"},{"name":"conjunctiva disease or disorder","type":"exact"},{"name":"conjunctival disease","type":"exact"},{"name":"conjunctival disorder","type":"exact"},{"name":"disease of conjunctiva","type":"exact"},{"name":"disease or disorder of conjunctiva","type":"exact"},{"name":"disorder of conjunctiva","type":"exact"}],"termid":"MONDO:0006170","xrefs":{"Monarch":{"xref_id":"0006170"}}}


id: MONDO:0000692
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Kleine-Levin syndrome (obsolete MONDO:0000692)","termid":"MONDO:0000692","xrefs":{"Monarch":{"xref_id":"0000692"}}}


id: PBO:0068315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNF14 pseudogene 3","termid":"PBO:0068315"}


id: PBO:0001409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy associated ubiquitin-like modifier Atg12","termid":"PBO:0001409"}


id: PBO:0062922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P2Y receptor family member 10","termid":"PBO:0062922"}


id: MONDO:0042603
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sanderson-Fraser syndrome","secondary_identifiers":["UMLS:C2931450","MEDGEN:419081","MESH:C537232"],"synonyms":[{"name":"Sanderson Fraser syndrome","type":"related"},{"name":"proptosis, Robin association, clenched hands, and multiple abnormalities","type":"related"}],"termid":"MONDO:0042603","xrefs":{"Monarch":{"xref_id":"0042603"}}}


id: MONDO:0010109
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetraamelia with ectodermal dysplasia and lacrimal duct abnormalities","secondary_identifiers":["MESH:C536496","OMIM:273390","UMLS:C2931214","MEDGEN:444003"],"synonyms":[{"name":"Madokoro Ohdo Sonoda syndrome","type":"related"},{"name":"tetra-amelia, ectodermal dysplasia, and lacrimal duct abnormality","type":"related"},{"name":"tetraamelia with ectodermal dysplasia and lacrimal duct abnormalities","type":"exact"}],"termid":"MONDO:0010109","xrefs":{"Monarch":{"xref_id":"0010109"}}}


id: GO:0055007
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cardiac muscle precursor cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction.","definition_xrefs":["GOC:devbiol","GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiocyte differentiation","termid":"GO:0035051"},{"relation_name":"is_a","term_name":"striated muscle cell differentiation","termid":"GO:0051146"},{"relation_name":"part_of","term_name":"cardiac muscle tissue development","termid":"GO:0048738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac muscle cell differentiation","synonyms":[{"name":"cardiomyocyte differentiation","type":"exact"},{"name":"heart muscle cell differentiation","type":"related"}],"termid":"GO:0055007"}


id: GO:1904960
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cytochrome-c oxidase activity.","definition_xrefs":["GOC:TermGenie","GO_REF:0000059","PMID:26734017"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of ion transmembrane transporter activity","termid":"GO:0032414"},{"relation_name":"is_a","term_name":"regulation of cytochrome-c oxidase activity","termid":"GO:1904959"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cytochrome-c oxidase activity","synonyms":[{"name":"activation of NADH cytochrome c oxidase","type":"narrow"},{"name":"activation of aa3-type cytochrome c oxidase","type":"narrow"},{"name":"activation of ba3-type cytochrome c oxidase","type":"narrow"},{"name":"activation of caa3-type cytochrome c oxidase","type":"narrow"},{"name":"activation of cbb3-type cytochrome c oxidase","type":"narrow"},{"name":"activation of complex IV (mitochondrial electron transport) activity","type":"related"},{"name":"activation of cytochrome a3 activity","type":"narrow"},{"name":"activation of cytochrome aa3 activity","type":"narrow"},{"name":"activation of cytochrome c oxidase activity","type":"narrow"},{"name":"activation of cytochrome oxidase activity","type":"related"},{"name":"activation of cytochrome-c oxidase activity","type":"narrow"},{"name":"activation of ferrocytochrome c oxidase","type":"narrow"},{"name":"activation of ferrocytochrome-c:oxygen oxidoreductase","type":"narrow"},{"name":"activation of indophenol oxidase","type":"narrow"},{"name":"activation of indophenolase","type":"narrow"},{"name":"activation of warburg's respiratory enzyme activity","type":"related"},{"name":"positive regulation of NADH cytochrome c oxidase","type":"exact"},{"name":"positive regulation of aa3-type cytochrome c oxidase","type":"narrow"},{"name":"positive regulation of ba3-type cytochrome c oxidase","type":"narrow"},{"name":"positive regulation of caa3-type cytochrome c oxidase","type":"narrow"},{"name":"positive regulation of cbb3-type cytochrome c oxidase","type":"narrow"},{"name":"positive regulation of complex IV (mitochondrial electron transport) activity","type":"related"},{"name":"positive regulation of cytochrome a3 activity","type":"narrow"},{"name":"positive regulation of cytochrome aa3 activity","type":"narrow"},{"name":"positive regulation of cytochrome c oxidase activity","type":"exact"},{"name":"positive regulation of cytochrome oxidase activity","type":"related"},{"name":"positive regulation of ferrocytochrome c oxidase","type":"narrow"},{"name":"positive regulation of ferrocytochrome-c:oxygen oxidoreductase","type":"narrow"},{"name":"positive regulation of indophenol oxidase","type":"narrow"},{"name":"positive regulation of indophenolase","type":"narrow"},{"name":"positive regulation of warburg's respiratory enzyme activity","type":"related"},{"name":"up regulation of NADH cytochrome c oxidase","type":"exact"},{"name":"up regulation of aa3-type cytochrome c oxidase","type":"narrow"},{"name":"up regulation of ba3-type cytochrome c oxidase","type":"narrow"},{"name":"up regulation of caa3-type cytochrome c oxidase","type":"narrow"},{"name":"up regulation of cbb3-type cytochrome c oxidase","type":"narrow"},{"name":"up regulation of complex IV (mitochondrial electron transport) activity","type":"related"},{"name":"up regulation of cytochrome a3 activity","type":"narrow"},{"name":"up regulation of cytochrome aa3 activity","type":"narrow"},{"name":"up regulation of cytochrome c oxidase activity","type":"exact"},{"name":"up regulation of cytochrome oxidase activity","type":"related"},{"name":"up regulation of cytochrome-c oxidase activity","type":"exact"},{"name":"up regulation of ferrocytochrome c oxidase","type":"narrow"},{"name":"up regulation of ferrocytochrome-c:oxygen oxidoreductase","type":"narrow"},{"name":"up regulation of indophenol oxidase","type":"narrow"},{"name":"up regulation of indophenolase","type":"narrow"},{"name":"up regulation of warburg's respiratory enzyme activity","type":"related"},{"name":"up-regulation of NADH cytochrome c oxidase","type":"exact"},{"name":"up-regulation of aa3-type cytochrome c oxidase","type":"narrow"},{"name":"up-regulation of ba3-type cytochrome c oxidase","type":"narrow"},{"name":"up-regulation of caa3-type cytochrome c oxidase","type":"narrow"},{"name":"up-regulation of cbb3-type cytochrome c oxidase","type":"narrow"},{"name":"up-regulation of complex IV (mitochondrial electron transport) activity","type":"related"},{"name":"up-regulation of cytochrome a3 activity","type":"narrow"},{"name":"up-regulation of cytochrome aa3 activity","type":"narrow"},{"name":"up-regulation of cytochrome c oxidase activity","type":"exact"},{"name":"up-regulation of cytochrome oxidase activity","type":"related"},{"name":"up-regulation of cytochrome-c oxidase activity","type":"exact"},{"name":"up-regulation of ferrocytochrome c oxidase","type":"narrow"},{"name":"up-regulation of ferrocytochrome-c:oxygen oxidoreductase","type":"narrow"},{"name":"up-regulation of indophenol oxidase","type":"narrow"},{"name":"up-regulation of indophenolase","type":"narrow"},{"name":"up-regulation of warburg's respiratory enzyme activity","type":"related"},{"name":"upregulation of NADH cytochrome c oxidase","type":"exact"},{"name":"upregulation of aa3-type cytochrome c oxidase","type":"narrow"},{"name":"upregulation of ba3-type cytochrome c oxidase","type":"narrow"},{"name":"upregulation of caa3-type cytochrome c oxidase","type":"narrow"},{"name":"upregulation of cbb3-type cytochrome c oxidase","type":"narrow"},{"name":"upregulation of complex IV (mitochondrial electron transport) activity","type":"related"},{"name":"upregulation of cytochrome a3 activity","type":"narrow"},{"name":"upregulation of cytochrome aa3 activity","type":"narrow"},{"name":"upregulation of cytochrome c oxidase activity","type":"exact"},{"name":"upregulation of cytochrome oxidase activity","type":"related"},{"name":"upregulation of cytochrome-c oxidase activity","type":"exact"},{"name":"upregulation of ferrocytochrome c oxidase","type":"narrow"},{"name":"upregulation of ferrocytochrome-c:oxygen oxidoreductase","type":"narrow"},{"name":"upregulation of indophenol oxidase","type":"narrow"},{"name":"upregulation of indophenolase","type":"narrow"},{"name":"upregulation of warburg's respiratory enzyme activity","type":"related"}],"termid":"GO:1904960"}


id: MONDO:1012606
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any glycogen storage disease that occurs in cats due to a mutation in the GBE1 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycogen storage disease, non-human animal","termid":"MONDO:1011419"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycogen storage disease IV, domestic cat","secondary_identifiers":["OMIA:000420-9685"],"synonyms":[{"name":"GSD IV","type":"exact"}],"termid":"MONDO:1012606","xrefs":{"Monarch":{"xref_id":"1012606"}}}


id: PBO:0028456
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_rate_of_actomyosin_contractile_ring_assembly","termid":"PBO:0028456"}


id: PBO:0075932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST18 C2H2C-type zinc finger transcription factor","termid":"PBO:0075932"}


id: PBO:0045706
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity tyrosine phosphorylation regulated kinase 4","termid":"PBO:0045706"}


id: GO:0033570
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of transferrin from one side of a membrane to the other.","definition_xrefs":["GOC:mlg"],"gene_count":0,"genotype_count":0,"name":"obsolete transferrin transmembrane transporter activity (obsolete GO:0033570)","termid":"GO:0033570"}


id: MONDO:1010323
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Entropion that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of orbital region, non-human animal","termid":"MONDO:1011315"},{"relation_name":"is_a","term_name":"disorder of visual system, non-human animal","termid":"MONDO:1011316"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"entropion, non-human animal","secondary_identifiers":["OMIA:000337"],"termid":"MONDO:1010323","xrefs":{"Monarch":{"xref_id":"1010323"}}}


id: PR:O74360
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rga4 gene.","definition_xrefs":["UniProtKB:O74360","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rho-type GTPase-activating protein 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC28E12.03","synonyms":[{"name":"Spom972h-rga4","type":"exact"}],"termid":"PR:O74360"}


id: GO:1900486
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of isopentenyl diphosphate biosynthetic process, mevalonate pathway.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of amide metabolic process","termid":"GO:0034250"},{"relation_name":"is_a","term_name":"positive regulation of isoprenoid metabolic process","termid":"GO:0045828"},{"relation_name":"is_a","term_name":"positive regulation of nucleobase-containing compound metabolic process","termid":"GO:0045935"},{"relation_name":"is_a","term_name":"positive regulation of sulfur metabolic process","termid":"GO:0051176"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"positive regulation of phospholipid biosynthetic process","termid":"GO:0071073"},{"relation_name":"is_a","term_name":"regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway","termid":"GO:2001210"},{"relation_name":"positively_regulates","term_name":"isopentenyl diphosphate biosynthetic process, mevalonate pathway","termid":"GO:0019287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0055086"},{"rel_name":"positively_regulates","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0006790","GO:0006629","GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway","synonyms":[{"name":"activation of Ac-MVA pathway","type":"exact"},{"name":"activation of acetate-mevalonate pathway","type":"exact"},{"name":"activation of isopentenyl diphosphate anabolism, mevalonate pathway","type":"exact"},{"name":"activation of isopentenyl diphosphate biosynthetic process, mevalonate pathway","type":"narrow"},{"name":"activation of isopentenyl diphosphate formation, mevalonate pathway","type":"exact"},{"name":"activation of isopentenyl diphosphate synthesis, mevalonate pathway","type":"exact"},{"name":"positive regulation of Ac-MVA pathway","type":"exact"},{"name":"positive regulation of acetate-mevalonate pathway","type":"exact"},{"name":"positive regulation of isopentenyl diphosphate anabolism, mevalonate pathway","type":"exact"},{"name":"positive regulation of isopentenyl diphosphate formation, mevalonate pathway","type":"exact"},{"name":"positive regulation of isopentenyl diphosphate synthesis, mevalonate pathway","type":"exact"},{"name":"up regulation of Ac-MVA pathway","type":"exact"},{"name":"up regulation of acetate-mevalonate pathway","type":"exact"},{"name":"up regulation of isopentenyl diphosphate anabolism, mevalonate pathway","type":"exact"},{"name":"up regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway","type":"exact"},{"name":"up regulation of isopentenyl diphosphate formation, mevalonate pathway","type":"exact"},{"name":"up regulation of isopentenyl diphosphate synthesis, mevalonate pathway","type":"exact"},{"name":"up-regulation of Ac-MVA pathway","type":"exact"},{"name":"up-regulation of acetate-mevalonate pathway","type":"exact"},{"name":"up-regulation of isopentenyl diphosphate anabolism, mevalonate pathway","type":"exact"},{"name":"up-regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway","type":"exact"},{"name":"up-regulation of isopentenyl diphosphate formation, mevalonate pathway","type":"exact"},{"name":"up-regulation of isopentenyl diphosphate synthesis, mevalonate pathway","type":"exact"},{"name":"upregulation of Ac-MVA pathway","type":"exact"},{"name":"upregulation of acetate-mevalonate pathway","type":"exact"},{"name":"upregulation of isopentenyl diphosphate anabolism, mevalonate pathway","type":"exact"},{"name":"upregulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway","type":"exact"},{"name":"upregulation of isopentenyl diphosphate formation, mevalonate pathway","type":"exact"},{"name":"upregulation of isopentenyl diphosphate synthesis, mevalonate pathway","type":"exact"}],"termid":"GO:1900486"}


id: GO:0071383
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to hormone stimulus","termid":"GO:0032870"},{"relation_name":"is_a","term_name":"response to steroid hormone","termid":"GO:0048545"},{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to steroid hormone stimulus","secondary_identifiers":["Reactome:R-HSA-3371497"],"termid":"GO:0071383"}


id: PBO:0050673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member 8","termid":"PBO:0050673"}


id: PR:O59805
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC550.07 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59805"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amidase C550.07 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC550.07","synonyms":[{"name":"Spom972h-SPCC550.07","type":"exact"}],"termid":"PR:O59805"}


id: PBO:0002525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-B homolog Cbh1","termid":"PBO:0002525"}


id: FYPO:0002922
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which ubiquitination of lysine at position 119 of histone H2B does not occur. Lysine 119 corresponds to the conserved C-terminal lysine of H2B.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H2B-K119 ubiquitination during vegetative growth","termid":"FYPO:0005607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002274","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"abolished histone H2B-K119 ubiquitination during vegetative growth","synonyms":[{"name":"abolished histone H2B conserved C-terminal lysine ubiquitination during vegetative growth","type":"exact"},{"name":"abolished histone H2B-K119 ubiquitination during mitotic cell cycle","type":"related"},{"name":"histone H2B-K119 ubiquitination abolished during vegetative growth","type":"exact"},{"name":"histone H2B-K119 ubiquitination absent during vegetative growth","type":"exact"}],"termid":"FYPO:0002922"}


id: PBO:0043514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CNTNAP3 pseudogene 9","termid":"PBO:0043514"}


id: PBO:0060959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NFKB inhibitor like 1","termid":"PBO:0060959"}


id: GO:1905405
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of mitotic cohesin loading.","definition_xrefs":["PMID:26687354","GOC:TermGenie","GO_REF:0000058"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of mitotic cohesin loading (obsolete GO:1905405)","termid":"GO:1905405"}


id: MONDO:0024633
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Kidney damage that results from chronically elevated blood pressure; complications include glomerular damage resulting in proteinuria and hematuria.","definition_xrefs":["NCIT:C4757"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney disorder","termid":"MONDO:0005240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"hypertensive nephropathy","secondary_identifiers":["SCTID:38481006","ICD9:403.90","UMLS:C0848548","OMIM:608026","MESH:C563161","MEDGEN:167258"],"synonyms":[{"name":"HNP1","type":"exact"},{"name":"hypertensive nephropathy","type":"exact"},{"name":"hypertensive renal disease","type":"exact"}],"termid":"MONDO:0024633","xrefs":{"Monarch":{"xref_id":"0024633"}}}


id: PBO:0047118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 166 member A","termid":"PBO:0047118"}


id: GO:0019463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of glycine into other compounds, including creatine.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete glycine catabolic process to creatine (obsolete GO:0019463)","synonyms":[{"name":"glycine breakdown to creatine","type":"exact"},{"name":"glycine degradation to creatine","type":"exact"}],"termid":"GO:0019463"}


id: FYPO:0004939
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the phosphorylation of one or more specific proteins, or of specific protein sites, does not occur during the meiotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic cell cycle","termid":"FYPO:0000052"},{"relation_name":"is_a","term_name":"abolished protein phosphorylation","termid":"FYPO:0002678"},{"relation_name":"is_a","term_name":"abnormal protein modification during meiotic cell cycle","termid":"FYPO:0006459"},{"relation_name":"is_a","term_name":"abnormal protein phosphorylation during meiotic cell cycle","termid":"FYPO:0006765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0002274","FYPO:0002494","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein phosphorylation during meiotic cell cycle","synonyms":[{"name":"protein phosphorylation abolished during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0004939"}


id: PBO:0053294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIM zinc finger domain containing 1","termid":"PBO:0053294"}


id: GO:0060320
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The recognition and rejection of self pollen by cells in the stigma, mediated by the sharing and interaction of the single locus incompatibility haplotypes.","definition_xrefs":["GOC:tb","GOC:dph","PMID:34848142"],"direct_ancestors":[{"relation_name":"is_a","term_name":"recognition of pollen","termid":"GO:0048544"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rejection of self pollen","synonyms":[{"name":"self-incompatibility","type":"related"}],"termid":"GO:0060320"}


id: PBO:0051463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable 10-67 (pseudogene)","termid":"PBO:0051463"}


id: GO:1904308
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desipramine stimulus.","definition_xrefs":["GO_REF:0000071","GOC:TermGenie","PMID:20549303"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"response to desipramine","termid":"GO:1904307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to desipramine","termid":"GO:1904308"}


id: MONDO:0859330
data:
  {"annotated_genes":["SJAG_04682"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87505],"is_not":false,"summary":null,"term":"MONDO:0859330"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited oocyte maturation defect","termid":"MONDO:0014769"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04682":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"oocyte maturation defect 13","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:620154","UMLS:C5774268","MEDGEN:1824041"],"termid":"MONDO:0859330","terms_by_termid":{"MONDO:0859330":null},"xrefs":{"Monarch":{"xref_id":"0859330"}}}


id: PBO:0059849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 2","termid":"PBO:0059849"}


id: FYPO:0005676
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the deubiquitination of one or more specific proteins, or of specific protein sites, does not occur after cells have been exposed to methyl methanesulfonate.","definition_xrefs":["PMID:27151298","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein modification during vegetative growth","termid":"FYPO:0000544"},{"relation_name":"is_a","term_name":"abolished proteolysis during vegetative growth","termid":"FYPO:0005377"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0002274","FYPO:0001320","FYPO:0002494"],"is_obsolete":false,"name":"abolished protein deubiquitination following cellular response to methyl methanesulfonate during vegetative growth","synonyms":[{"name":"abolished protein deubiquitination during cellular response to methyl methanesulfonate","type":"related"},{"name":"abolished protein deubiquitination following cellular response to MMS","type":"exact"},{"name":"abolished protein deubiquitination following cellular response to methyl methanesulfonate during mitotic cell cycle","type":"related"},{"name":"abolished protein deubiquitylation following cellular response to methyl methanesulfonate","type":"exact"},{"name":"protein deubiquitination following cellular response to methyl methanesulfonate abolished","type":"exact"}],"termid":"FYPO:0005676"}


id: PATO:0000559
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000559 absolute size value (obsolete PATO:0000559)","termid":"PATO:0000559"}


id: PR:P36629
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A splicing factor U2AF 65 kDa subunit that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02675","PANTHER:PTHR23139:SF9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor U2AF 59 kDa subunit (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC146.07","secondary_identifiers":["UniProtKB:P36629"],"synonyms":[{"name":"Spom972h-U2AF2","type":"exact"},{"name":"U2 auxiliary factor 59 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"U2 snRNP auxiliary factor large subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"U2AF59 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P36629"}


id: GO:0032461
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein oligomerization.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein-containing complex assembly","termid":"GO:0031334"},{"relation_name":"is_a","term_name":"regulation of protein oligomerization","termid":"GO:0032459"},{"relation_name":"positively_regulates","term_name":"protein complex oligomerization","termid":"GO:0051259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0065003"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of protein oligomerization","synonyms":[{"name":"activation of protein oligomerization","type":"narrow"},{"name":"induction of protein oligomerization","type":"related"},{"name":"stimulation of protein oligomerization","type":"narrow"},{"name":"up regulation of protein oligomerization","type":"exact"},{"name":"up-regulation of protein oligomerization","type":"exact"},{"name":"upregulation of protein oligomerization","type":"exact"}],"termid":"GO:0032461"}


id: MONDO:0023043
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"alopecia","termid":"MONDO:0004907"},{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"ectodermal dysplasia alopecia preaxial polydactyly","secondary_identifiers":["GARD:2040","UMLS:C2931691","MEDGEN:419138","MESH:C538016"],"synonyms":[{"name":"absence of body & scalp hair, rounded nails, thin dental enamel, preaxial polydactyly of the feet, and unusual facial appearance","type":"related"}],"termid":"MONDO:0023043","xrefs":{"Monarch":{"xref_id":"0023043"}}}


id: GO:0008310
data:
  {"annotated_genes":["SJAG_02908","SJAG_00377"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75898,103103],"is_not":false,"summary":null,"term":"GO:0008310"}]},"cv_name":"molecular_function","definition":"Catalysis of the sequential cleavage of mononucleotides from a free 3' terminus of a single-stranded DNA molecule.","definition_xrefs":["PMID:22562358","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3'-5'-DNA exonuclease activity","termid":"GO:0008296"},{"relation_name":"is_a","term_name":"single-stranded DNA exodeoxyribonuclease activity","termid":"GO:0008297"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00377":null,"SJAG_02908":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0004527"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0003674","GO:0140097","GO:0003824","GO:0016787","GO:0016788","GO:0004527"],"is_obsolete":false,"name":"single-stranded DNA 3'-5' DNA exonuclease activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["EC:3.1.11.1","MetaCyc:3.1.11.1-RXN"],"synonyms":[{"name":"exonuclease I activity","type":"narrow"},{"name":"single-stranded DNA 3'-5' exodeoxyribonuclease activity","type":"exact"},{"name":"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity","type":"related"},{"name":"ssDNA-specific 3'-5' exodeoxyribonuclease activity","type":"related"}],"termid":"GO:0008310","terms_by_termid":{"GO:0008310":null}}


id: PBO:0003359
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally activates per1","termid":"PBO:0003359"}


id: MONDO:0002425
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary or metastatic malignant neoplasm that affects the rectosigmoid area. Representative examples include carcinoma, lymphoma, and sarcoma.","definition_xrefs":["NCIT:C7420"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sigmoid colon cancer","termid":"MONDO:0001464"},{"relation_name":"is_a","term_name":"rectosigmoid junction neoplasm","termid":"MONDO:0002423"},{"relation_name":"is_a","term_name":"rectal cancer","termid":"MONDO:0006519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"rectosigmoid junction cancer","secondary_identifiers":["ICD10CM:C19","ICD9:154.0","DOID:2782","SCTID:363414004","UMLS:C0153443","MEDGEN:57558"],"synonyms":[{"name":"cancer of rectosigmoid junction","type":"exact"},{"name":"malignant neoplasm of rectosigmoid","type":"exact"},{"name":"malignant neoplasm of rectosigmoid junction","type":"exact"},{"name":"malignant neoplasm of the rectosigmoid junction","type":"exact"},{"name":"malignant rectosigmoid junction neoplasm","type":"exact"},{"name":"malignant rectosigmoid neoplasm","type":"exact"},{"name":"malignant rectosigmoid tumor","type":"exact"},{"name":"malignant rectosigmoid tumour","type":"exact"},{"name":"malignant tumor of rectosigmoid junction","type":"exact"},{"name":"malignant tumor of the rectosigmoid junction","type":"exact"},{"name":"malignant tumour of rectosigmoid junction","type":"exact"},{"name":"malignant tumour of the rectosigmoid junction","type":"exact"},{"name":"rectosigmoid junction cancer","type":"exact"}],"termid":"MONDO:0002425","xrefs":{"Monarch":{"xref_id":"0002425"}}}


id: GO:0071861
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a tachykinin receptor.","definition_xrefs":["GOC:kmv","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor binding","termid":"GO:0071855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"tachykinin receptor binding","termid":"GO:0071861"}


id: PBO:0057341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 526a-2","termid":"PBO:0057341"}


id: MONDO:1012098
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"primary autoimmune hemolytic anemia, non-human animal","termid":"MONDO:1011690"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary autoimmune hemolytic anemia, dog","secondary_identifiers":["OMIA:000434-9615"],"termid":"MONDO:1012098","xrefs":{"Monarch":{"xref_id":"1012098"}}}


id: GO:0034650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving cortisol, the steroid hormone 11-beta-17,21-trihydroxypregn-4-ene-3,20-dione. Cortisol is synthesized from cholesterol in the adrenal gland and controls carbohydrate, fat and protein metabolism and has anti-inflammatory properties.","definition_xrefs":["GOC:BHF","GOC:rl","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucocorticoid metabolic process","termid":"GO:0008211"},{"relation_name":"is_a","term_name":"primary alcohol metabolic process","termid":"GO:0034308"},{"relation_name":"is_a","term_name":"ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"},{"relation_name":"is_a","term_name":"tertiary alcohol metabolic process","termid":"GO:1902644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"cortisol metabolic process","synonyms":[{"name":"cortisol metabolism","type":"exact"}],"termid":"GO:0034650"}


id: GO:0018227
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of peptidyl-cysteine to form S-12-hydroxyfarnesyl-L-cysteine; formation of S-farnesycysteine may be coupled with subsequent cleavage of a carboxy-terminal tripeptide for the CXXX motif and methyl esterification of the farnesylated cysteine.","definition_xrefs":["RESID:AA0103"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-S-12-hydroxyfarnesyl-L-cysteine biosynthetic process from peptidyl-cysteine (obsolete GO:0018227)","synonyms":[{"name":"peptidyl-S-12-hydroxyfarnesyl-L-cysteine anabolism from peptidyl-cysteine","type":"exact"},{"name":"peptidyl-S-12-hydroxyfarnesyl-L-cysteine formation from peptidyl-cysteine","type":"exact"},{"name":"peptidyl-S-12-hydroxyfarnesyl-L-cysteine synthesis from peptidyl-cysteine","type":"exact"}],"termid":"GO:0018227"}


id: PBO:0056402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAPT intronic transcript 1","termid":"PBO:0056402"}


id: MONDO:0030941
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"erythrokeratodermia variabilis","termid":"MONDO:0017851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"erythrokeratodermia variabilis et progressiva 7","secondary_identifiers":["MEDGEN:1780408","UMLS:C5543106","OMIM:619209","GARD:18674"],"synonyms":[{"name":"EKVP7","type":"exact"},{"name":"erythrokeratodermia variabilis et progressiva 7","type":"exact"}],"termid":"MONDO:0030941","xrefs":{"Monarch":{"xref_id":"0030941"}}}


id: MONDO:0010851
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lowry-MacLean syndrome is a very rare syndrome characterized by microcephaly, craniosynostosis, glaucoma, growth failure and visceral malformations.","definition_xrefs":["Orphanet:2409"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"syndromic craniosynostosis","termid":"MONDO:0015338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005497","MONDO:0005328"],"is_obsolete":false,"name":"Lowry-MacLean syndrome","secondary_identifiers":["icd11.foundation:698387769","SCTID:721974000","MEDGEN:167095","UMLS:C0796020","MESH:C537037","OMIM:600252","GARD:3300"],"synonyms":[{"name":"Lowry MacLean syndrome","type":"related"},{"name":"Lowry-MacLean syndrome","type":"exact"},{"name":"intellectual disability, cleft palate, eventration of diaphragm, congenital heart defect, glaucoma, craniosynostosis and growth failure","type":"related"},{"name":"mental retardation, cleft palate, eventration of diaphragm, congenital heart defect, glaucoma, craniosynostosis and growth failure","type":"related"}],"termid":"MONDO:0010851","xrefs":{"Monarch":{"xref_id":"0010851"}}}


id: PBO:0059429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MRT4 homolog, ribosome maturation factor","termid":"PBO:0059429"}


id: PBO:0038340
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_exposure_transport_path","termid":"PBO:0038340"}


id: PBO:0005292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear telomere cap complex subunit Ten1","termid":"PBO:0005292"}


id: GO:0051396
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the activity of the nerve growth factor (NGF) receptor.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of nerve growth factor receptor activity (obsolete GO:0051396)","synonyms":[{"name":"activation of nerve growth factor receptor activity","type":"narrow"},{"name":"positive regulation of NGF receptor activity","type":"exact"},{"name":"stimulation of nerve growth factor receptor activity","type":"narrow"},{"name":"up regulation of nerve growth factor receptor activity","type":"exact"},{"name":"up-regulation of nerve growth factor receptor activity","type":"exact"},{"name":"upregulation of nerve growth factor receptor activity","type":"exact"}],"termid":"GO:0051396"}


id: MONDO:0020368
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Axenfeld's anomaly is a rare congenital ocular defect caused by anterior segment dysgenesis and is characterized by anteriorly displaced Schwalbe's line and iris bands extending into the cornea. In contrast, Rieger's anomaly includes characteristic iris and pupil anomalies.","definition_xrefs":["Orphanet:98978"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete goniodysgenesis (obsolete MONDO:0020218)","termid":"MONDO:0020218"},{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"Axenfeld anomaly","secondary_identifiers":["icd11.foundation:1703498511","MedDRA:10058653","ICD9:743.44","UMLS:C0266548","SCTID:204152008","MEDGEN:78611","GARD:16485"],"termid":"MONDO:0020368","xrefs":{"Monarch":{"xref_id":"0020368"}}}


id: PBO:0001053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiamine-phosphate dipyrophosphorylase/hydroxyethylthiazole kinase","termid":"PBO:0001053"}


id: PBO:0076617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin folding cofactor A pseudogene 2","termid":"PBO:0076617"}


id: MONDO:0008685
data:
  {"annotated_genes":["SJAG_02785"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87943],"is_not":false,"summary":null,"term":"MONDO:0008685"}]},"cv_name":"mondo","definition":"A cardiac conduction disorder characterized by an electrocardiographic finding of ventricular pre-excitation, which is a short PR interval and a long QRS interval with a delta wave. Most individuals are asymptomatic; however they can experience periods of palpitations, shortness of breath or syncope during tachycardic episodes.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart conduction disease","termid":"MONDO:0000992"},{"relation_name":"is_a","term_name":"PRKAG2-related cardiomyopathy","termid":"MONDO:0800484"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02785":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"Wolff-Parkinson-White syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["icd11.foundation:1091030330","DOID:384","HP:0001716","NCIT:C35132","Orphanet:907","MESH:D014927","SCTID:17869006","OMIM:194200","EFO:1001450","MEDGEN:12162","ICD9:426.7","UMLS:C0043202","NANDO:2200217"],"synonyms":[{"name":"WPW","type":"exact"},{"name":"Wolff-Parkinson-White pattern","type":"exact"},{"name":"Wolff-Parkinson-White pattern (finding)","type":"exact"},{"name":"Wolff-Parkinson-White syndrome","type":"exact"},{"name":"Wolff-Parkinson-white syndrome (disease)","type":"exact"},{"name":"Wpw syndrome","type":"related"},{"name":"accessory atrioventricular pathways","type":"related"},{"name":"anomalous A-V excitation","type":"exact"},{"name":"anomalous atrioventricular excitation","type":"exact"},{"name":"preexcitation syndrome","type":"related"},{"name":"ventricular familial preexcitation syndrome","type":"exact"}],"termid":"MONDO:0008685","terms_by_termid":{"MONDO:0008685":null},"xrefs":{"Monarch":{"xref_id":"0008685"}}}


id: PBO:0082461
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Calcineurin A; one isoform (the other is Cmp2p) of the catalytic subunit of calcineurin, a Ca++/calmodulin-regulated protein phosphatase which regulates Crz1p (a stress-response transcription factor), the other calcineurin subunit is CNB1; regulates the function of Aly1p alpha-arrestin; CNA1 has a paralog, CMP2, that arose from the whole genome duplication","termid":"PBO:0082461"}


id: PBO:0065313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 36","termid":"PBO:0065313"}


id: PBO:0083486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene VPH2","termid":"PBO:0083486"}


id: GO:0072000
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of polysaccharides in the ascus wall that contributes to the release of ascospores from the ascus.","definition_xrefs":["GOC:mah","GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete extracellular polysaccharide catabolic process involved in ascospore release from ascus (obsolete GO:0072000)","synonyms":[{"name":"ascus catabolic process","type":"related"},{"name":"ascus endolysis","type":"related"},{"name":"extracellular polysaccharide breakdown involved in ascospore release from ascus","type":"exact"},{"name":"extracellular polysaccharide catabolism involved in ascospore release from ascus","type":"exact"},{"name":"extracellular polysaccharide degradation involved in ascospore release from ascus","type":"exact"}],"termid":"GO:0072000"}


id: PBO:0001527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine-rich repeat protein","termid":"PBO:0001527"}


id: GO:0045315
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of compound eye photoreceptor development.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of eye photoreceptor cell development","termid":"GO:0042479"},{"relation_name":"is_a","term_name":"regulation of compound eye photoreceptor development","termid":"GO:0045314"},{"relation_name":"positively_regulates","term_name":"compound eye photoreceptor development","termid":"GO:0042051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of compound eye photoreceptor development","synonyms":[{"name":"activation of eye photoreceptor development","type":"broad"},{"name":"positive regulation of eye photoreceptor development","type":"broad"},{"name":"stimulation of eye photoreceptor development","type":"broad"},{"name":"up regulation of eye photoreceptor development","type":"broad"},{"name":"up-regulation of eye photoreceptor development","type":"broad"},{"name":"upregulation of eye photoreceptor development","type":"broad"}],"termid":"GO:0045315"}


id: PR:O43042
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mrpl3 gene.","definition_xrefs":["UniProtKB:O43042","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein L3, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3B9.14c","synonyms":[{"name":"Spom972h-mrpl3","type":"exact"}],"termid":"PR:O43042"}


id: PBO:0052557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"killer cell lectin like receptor G2","termid":"PBO:0052557"}


id: PBO:0078919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon TTG) 8-1","termid":"PBO:0078919"}


id: SO:0000975
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene found within a minicircle.","direct_ancestors":[{"relation_name":"is_a","term_name":"kinetoplast_gene","termid":"SO:0000089"},{"relation_name":"part_of","term_name":"minicircle","termid":"SO:0000980"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"minicircle_gene","synonyms":[{"name":"minicircle gene","type":"exact"}],"termid":"SO:0000975"}


id: PBO:0066314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding protein, mRNA processing factor","termid":"PBO:0066314"}


id: PBO:0109390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 19","termid":"PBO:0109390"}


id: GO:0000716
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The identification of lesions on the actively transcribed strand of the DNA duplex as well as a small subset of lesions not recognized by the general nucleotide-excision repair pathway.","definition_xrefs":["GOC:elh","PMID:10197977"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-excision repair, DNA damage recognition","termid":"GO:0000715"},{"relation_name":"part_of","term_name":"transcription-coupled nucleotide-excision repair","termid":"GO:0006283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"part_of","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006281","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"transcription-coupled nucleotide-excision repair, DNA damage recognition","synonyms":[{"name":"pyrimidine-dimer repair, DNA damage recognition","type":"related"}],"termid":"GO:0000716"}


id: PBO:0035798
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K14_acetylation_at_protein_coding_gene_during_vegetative_growth","termid":"PBO:0035798"}


id: GO:0106119
data:
  {"annotated_genes":["SJAG_02104"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95831],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010895"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of a sterol biosynthetic process.","definition_xrefs":["GOC:BHF_miRNA","GOC:rph","PMID:16459310","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of steroid biosynthetic process","termid":"GO:0010894"},{"relation_name":"is_a","term_name":"regulation of sterol biosynthetic process","termid":"GO:0106118"},{"relation_name":"negatively_regulates","term_name":"sterol biosynthetic process","termid":"GO:0016126"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02104":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"negative regulation of sterol biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106119","terms_by_termid":{"GO:0010895":null}}


id: PR:O42861
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fft3 gene.","definition_xrefs":["UniProtKB:O42861","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent helicase fft3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25A8.01c","synonyms":[{"name":"Fun thirty-related protein 3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-fft3","type":"exact"}],"termid":"PR:O42861"}


id: PBO:0058579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6516","termid":"PBO:0058579"}


id: GO:2001038
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellular response to drug.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular process","termid":"GO:0050794"},{"relation_name":"is_a","term_name":"regulation of response to drug","termid":"GO:2001023"},{"relation_name":"regulates","term_name":"cellular response to xenobiotic stimulus","termid":"GO:0071466"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular response to drug","termid":"GO:2001038"}


id: PBO:0075841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSU72 like 2","termid":"PBO:0075841"}


id: GO:0007610
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity.","definition_xrefs":["PMID:20160973","GOC:ems","ISBN:0395448956","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"behavior","secondary_identifiers":["GO:0044709","GO:0044708","GO:0023032","Wikipedia:Behavior"],"synonyms":[{"name":"behavioral response to stimulus","type":"exact"},{"name":"behaviour","type":"exact"},{"name":"behavioural response to stimulus","type":"exact"},{"name":"single-organism behavior","type":"related"}],"termid":"GO:0007610"}


id: PBO:0060077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 24","termid":"PBO:0060077"}


id: GO:0061742
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A lysosomal membrane protein complex that enables the translocation of a target protein across the lysosomal membrane as part of chaperone-mediated autophagy.","definition_xrefs":["PMID:20797626","GOC:pad","GOC:dph","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"part_of","term_name":"lysosomal membrane","termid":"GO:0005765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005773"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991","GO:0005773"],"is_obsolete":false,"name":"chaperone-mediated autophagy translocation complex","synonyms":[{"name":"CMA receptor complex","type":"related"},{"name":"CMA translocation complex","type":"exact"},{"name":"chaperone-mediated autophagy receptor complex","type":"related"}],"termid":"GO:0061742"}


id: MONDO:1012736
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any skeletal dysplasia that occurs in dogs due to a mutation in the COL11A2 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal dysplasia, non-human animal","termid":"MONDO:1012973"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"skeletal dysplasia, COL11A2-related, dog","secondary_identifiers":["OMIA:001772-9615"],"synonyms":[{"name":"SD2","type":"exact"},{"name":"skeletal dysplasia 2, COL11A2-related, dog","type":"exact"},{"name":"skeletal dysplasia 2, dog","type":"related"}],"termid":"MONDO:1012736","xrefs":{"Monarch":{"xref_id":"1012736"}}}


id: PBO:0000497
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ORF in compositionally biased region","termid":"PBO:0000497"}


id: PBO:0073918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 16 member 7","termid":"PBO:0073918"}


id: PBO:0053830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1095","termid":"PBO:0053830"}


id: PBO:0108576
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clr6 and Rpd3L histone deacetylase complex LCCL domain subunit Rxt3","termid":"PBO:0108576"}


id: PBO:0057504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 622","termid":"PBO:0057504"}


id: MOD:00610
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:291","PubMed:10695144"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"mercury containing modified residue","termid":"MOD:01075"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-cysteine residue","termid":"MOD:02067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"cysteinyl mercury","synonyms":[{"name":"Delta:Hg(1)","type":"related"},{"name":"Mercury Mercaptan","type":"related"}],"termid":"MOD:00610"}


id: GO:0045670
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of osteoclast differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of myeloid leukocyte differentiation","termid":"GO:0002761"},{"relation_name":"regulates","term_name":"osteoclast differentiation","termid":"GO:0030316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of osteoclast differentiation","termid":"GO:0045670"}


id: PBO:0057042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR133A1 host gene","termid":"PBO:0057042"}


id: MOD:00725
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with a carbohydrate-like group linked through a glycosidic bond.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosylated residue","termid":"MOD:00693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"complex glycosylation","termid":"MOD:00725"}


id: PBO:0064037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 71","termid":"PBO:0064037"}


id: PBO:0047574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor binding protein 2","termid":"PBO:0047574"}


id: MONDO:0017724
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Tay-Sachs disease","termid":"MONDO:0010100"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002039","MONDO:0002525","MONDO:0002561","MONDO:0005559","MONDO:0005328","MONDO:0005244"],"is_obsolete":false,"name":"Tay-Sachs disease, b variant, infantile form","secondary_identifiers":["SCTID:238021002","MEDGEN:1863558","GARD:21324","Orphanet:309178","UMLS:C5925031"],"synonyms":[{"name":"GM2 gangliosidosis, B variant, infantile form","type":"exact"},{"name":"hexosaminidase A deficiency, infantile form","type":"exact"}],"termid":"MONDO:0017724","xrefs":{"Monarch":{"xref_id":"0017724"}}}


id: GO:0150062
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Synaptic pruning mediated by complement system signaling.","definition_xrefs":["PMID:29844190","GOC:aruk","GOC:bc","PMID:18083105","PMID:22632727"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synapse pruning","termid":"GO:0098883"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"complement-mediated synapse pruning","synonyms":[{"name":"complement-dependent synapse pruning","type":"exact"},{"name":"synapse clearance","type":"broad"},{"name":"synapse disassembly","type":"broad"},{"name":"synapse elimination","type":"broad"},{"name":"synapse removal","type":"broad"}],"termid":"GO:0150062"}


id: PBO:0086096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein proposed to be associated with the nuclear pore complex; null mutant is viable, displays elevated frequency of mitochondrial genome loss and is sensitive to freeze-thaw stress","termid":"PBO:0086096"}


id: PBO:0025425
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"xeroderma pigementosum","termid":"PBO:0025425"}


id: MONDO:0014230
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any chronic mucocutaneous candidiasis in which the cause of the disease is a mutation in the TRAF3IP2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chronic mucocutaneous candidiasis","termid":"MONDO:0015279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005093"],"is_obsolete":false,"name":"candidiasis, familial, 8","secondary_identifiers":["OMIM:615527","UMLS:C3714992","GARD:15981","MEDGEN:811541"],"synonyms":[{"name":"CANDF8","type":"related"},{"name":"TRAF3IP2 chronic mucocutaneous candidiasis (disease)","type":"exact"},{"name":"candidiasis, familial chronic mucocutaneous, autosomal recessive","type":"related"},{"name":"candidiasis, familial, 8","type":"exact"},{"name":"candidiasis, familial, type 8","type":"exact"},{"name":"chronic mucocutaneous candidiasis (disease) caused by mutation in TRAF3IP2","type":"exact"}],"termid":"MONDO:0014230","xrefs":{"Monarch":{"xref_id":"0014230"}}}


id: MONDO:0001148
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A thrombophlebitis that involves the iliac vein.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thrombophlebitis","termid":"MONDO:0002800"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iliac vein thrombophlebitis","secondary_identifiers":["DOID:10880","MEDGEN:578307","ICD9:451.81","SCTID:42861008","UMLS:C0347887"],"synonyms":[{"name":"iliac vein thrombophlebitis","type":"exact"},{"name":"phlebitis and thrombophlebitis of the iliac vein","type":"exact"},{"name":"thrombophlebitis of iliac vein","type":"exact"}],"termid":"MONDO:0001148","xrefs":{"Monarch":{"xref_id":"0001148"}}}


id: PBO:0062915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purinergic receptor P2X 6 pseudogene","termid":"PBO:0062915"}


id: PBO:0043605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen beta(1-O)galactosyltransferase 2","termid":"PBO:0043605"}


id: MOD:01031
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dimethylbenzyl","synonyms":[{"name":"diMeBzl","type":"exact"}],"termid":"MOD:01031"}


id: PBO:0002358
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urolithiasis","termid":"PBO:0002358"}


id: MONDO:0020605
data:
  {"annotated_genes":["SJAG_03418","SJAG_03698"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87807,87806],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0026763"}]},"cv_name":"mondo","definition":"X-linked recessive form of disease.","definition_xrefs":["MONDO:patterns/x_linked"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked disease","termid":"MONDO:0000425"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03418":null,"SJAG_03698":null},"genotype_count":0,"is_obsolete":false,"name":"X-linked recessive disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1798083","UMLS:C5566660","DOID:0080012"],"termid":"MONDO:0020605","terms_by_termid":{"MONDO:0026763":null},"xrefs":{"Monarch":{"xref_id":"0020605"}}}


id: MONDO:0002699
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pancreatic ductal carcinoma (obsolete MONDO:0002699)","termid":"MONDO:0002699","xrefs":{"Monarch":{"xref_id":"0002699"}}}


id: PBO:0076584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1D8 antisense RNA 1","termid":"PBO:0076584"}


id: FYPO:0005578
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of intergenic meiotic recombination is normal (i.e. indistinguishable from wild type). Intergenic meiotic recombination reflects crossovers between homologous chromosomes.","definition_xrefs":["PomBase:mah","PMID:25579976"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiotic cell cycle process","termid":"FYPO:0007078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal intergenic meiotic recombination","synonyms":[{"name":"normal meiotic intergenic recombination","type":"exact"}],"termid":"FYPO:0005578"}


id: FYPO:0005547
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which protein targeting to the vacuole occurs to a lower extent than normal, and some of the protein is secreted.","definition_xrefs":["PMID:22484924","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein targeting to vacuole","termid":"FYPO:0000676"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein targeting to vacuole, with protein secreted","synonyms":[{"name":"decreased protein targeting to vacuole, with protein secreted, during mitotic cell cycle","type":"related"},{"name":"decreased protein targeting to vacuole, with protein secreted, during vegetative growth","type":"exact"},{"name":"protein partially mislocalized from vacuole to extracellular region","type":"related"},{"name":"reduced protein targeting to vacuole, with protein secreted","type":"exact"}],"termid":"FYPO:0005547"}


id: PBO:0121016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PSMD7 pseudogene 4","termid":"PBO:0121016"}


id: GO:0019914
data:
  {"annotated_genes":["SJAG_03591","SJAG_01716","SJAG_03618","SJAG_04614","SJAG_00973","SJAG_03699","SJAG_01401","SJAG_04140","SJAG_02057","SJAG_02404","SJAG_00439","SJAG_03525","SJAG_05978","SJAG_00613","SJAG_00100","SJAG_01210","SJAG_01213"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114962,113197,119079,103583,67524,72156,75961,81699],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061575"},{"annotations":[110875],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004861"},{"annotations":[63113,72437,73397,110340,75764,81000,108229,72080],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016538"}]},"cv_name":"molecular_function","definition":"Modulation of the activity of the enzyme cyclin-dependent protein kinase activating kinase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein kinase regulator activity","termid":"GO:0019887"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00100":null,"SJAG_00439":null,"SJAG_00613":null,"SJAG_00973":null,"SJAG_01210":null,"SJAG_01213":null,"SJAG_01401":null,"SJAG_01716":null,"SJAG_02057":null,"SJAG_02404":null,"SJAG_03525":null,"SJAG_03591":null,"SJAG_03618":null,"SJAG_03699":null,"SJAG_04140":null,"SJAG_04614":null,"SJAG_05978":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0030234","GO:0098772","GO:0003674"],"is_obsolete":false,"name":"cyclin-dependent protein kinase regulator activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"cyclin-dependent protein kinase activating kinase, intrinsic regulator activity","type":"narrow"}],"termid":"GO:0019914","terms_by_termid":{"GO:0004861":null,"GO:0016538":null,"GO:0061575":null}}


id: GO:2000194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of female gonad development.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of gonad development","termid":"GO:1905939"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal development","termid":"GO:2000026"},{"relation_name":"regulates","term_name":"female gonad development","termid":"GO:0008585"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of female gonad development","synonyms":[{"name":"regulation of ovarian development","type":"exact"},{"name":"regulation of ovary development","type":"exact"}],"termid":"GO:2000194"}


id: GO:0050203
data:
  {"annotated_genes":["SJAG_00947"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[117766],"is_not":false,"summary":null,"term":"GO:0050203"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + CoA + oxalate = AMP + diphosphate + H+ + oxalyl-CoA.","definition_xrefs":["RHEA:18293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00947":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"oxalate-CoA ligase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:OXALATE--COA-LIGASE-RXN","EC:6.2.1.8","KEGG_REACTION:R01558"],"synonyms":[{"name":"oxalate:CoA ligase (AMP-forming)","type":"related"},{"name":"oxalyl coenzyme A synthetase activity","type":"related"},{"name":"oxalyl-CoA synthetase activity","type":"related"}],"termid":"GO:0050203","terms_by_termid":{"GO:0050203":null}}


id: GO:0019220
data:
  {"annotated_genes":["SJAG_01906","SJAG_03170","SJAG_02785","SJAG_05314","SJAG_00685","SJAG_01187","SJAG_00053","SJAG_02380","SJAG_03940","SJAG_02613","SJAG_04422"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92356,59949],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902647"},{"annotations":[78030,74975],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045820"},{"annotations":[113365,117481],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001211"},{"annotations":[120009],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905707"},{"annotations":[114742,111715],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071072"},{"annotations":[119536],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902648"},{"annotations":[91641],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905857"},{"annotations":[71907],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006110"},{"annotations":[78029],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043456"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phosphorus metabolic process","termid":"GO:0051174"},{"relation_name":"regulates","term_name":"phosphate-containing compound metabolic process","termid":"GO:0006796"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00053":null,"SJAG_00685":null,"SJAG_01187":null,"SJAG_01906":null,"SJAG_02380":null,"SJAG_02613":null,"SJAG_02785":null,"SJAG_03170":null,"SJAG_03940":null,"SJAG_04422":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of phosphate metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"regulation of phosphate metabolism","type":"exact"}],"termid":"GO:0019220","terms_by_termid":{"GO:0006110":null,"GO:0043456":null,"GO:0045820":null,"GO:0071072":null,"GO:1902647":null,"GO:1902648":null,"GO:1905707":null,"GO:1905857":null,"GO:2001211":null}}


id: FYPO:0006900
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A septation phenotype observed in the vegetative growth phase of the life cycle in which a cell forms a septum that is thinner than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal septum morphology during vegetative growth","termid":"FYPO:0002023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0000032"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000032","FYPO:0001320","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"decreased septum thickness","synonyms":[{"name":"decreased septum thickness during mitotic cell cycle","type":"related"},{"name":"decreased septum thickness during vegetative growth","type":"exact"},{"name":"thin septum","type":"exact"}],"termid":"FYPO:0006900"}


id: GO:0071457
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ozone stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to ozone","termid":"GO:0010193"},{"relation_name":"is_a","term_name":"cellular response to reactive oxygen species","termid":"GO:0034614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to ozone","termid":"GO:0071457"}


id: FYPO:0007611
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which mitochondria are smaller, and the total number of mitochondria in the cell is lower, than normal.  Total mitochondrial volume is therefore lower than normal normal.","definition_xrefs":["PomBase:mah","PMID:31562247"],"direct_ancestors":[{"relation_name":"has_part","term_name":"small fragmented mitochondria","termid":"FYPO:0007193"},{"relation_name":"has_part","term_name":"decreased mitochondrial volume","termid":"FYPO:0007610"},{"relation_name":"is_a","term_name":"small fragmented mitochondria","termid":"FYPO:0007193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"small fragmented mitochondria present in decreased numbers","synonyms":[{"name":"small mitochondria with decreased mitochondrial volume during mitotic cell cycle","type":"related"},{"name":"small mitochondria with decreased total mitochondrial volume during vegetative growth","type":"exact"},{"name":"small mitochondria with reduced mitochondrial volume","type":"exact"}],"termid":"FYPO:0007611"}


id: PBO:0062987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PACRG antisense RNA 2","termid":"PBO:0062987"}


id: GO:0070017
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphav-beta3 integrin complex bound to thrombospondin.","definition_xrefs":["PMID:2478219"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"alphav-beta3 integrin-thrombospondin complex","synonyms":[{"name":"ITGAV-ITGB3-THBS1 complex","type":"narrow"}],"termid":"GO:0070017"}


id: PR:000028989
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A sterol regulatory element-binding protein that is a translation product of the Schizosaccharomyces pombe 972h- sre1 gene or a 1:1 ortholog thereof.","definition_xrefs":["PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sre1-type sterol regulatory element-binding protein 1","synonyms":[{"name":"SRE-1","type":"related"},{"name":"SRE1","type":"related"},{"name":"SREBP1","type":"related"},{"name":"sre1","type":"exact"}],"termid":"PR:000028989"}


id: PBO:0061092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NK6 homeobox 1","termid":"PBO:0061092"}


id: PBO:0003854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF and RSC complex subunit Ssr4","termid":"PBO:0003854"}


id: GO:0032389
data:
  {"annotated_genes":["SJAG_01620","SJAG_02187"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72538,73305],"is_not":false,"summary":null,"term":"GO:0032389"}]},"cv_name":"cellular_component","definition":"A heterodimer involved in the recognition of base-base and small insertion/deletion mismatches. In human the complex consists of two subunits, MLH1 and PMS2.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatch repair complex","termid":"GO:0032300"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01620":null,"SJAG_02187":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"MutLalpha complex","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"MLH1/PMS2 complex","type":"exact"},{"name":"MMR complex","type":"broad"},{"name":"MutL-alpha complex","type":"exact"}],"termid":"GO:0032389","terms_by_termid":{"GO:0032389":null}}


id: PBO:0064840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory subunit 12B","termid":"PBO:0064840"}


id: MONDO:0018804
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"progressive familial intrahepatic cholestasis","termid":"MONDO:0015762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"MYO5B-related progressive familial intrahepatic cholestasis","secondary_identifiers":["UMLS:C5680100","GARD:21972","Orphanet:480491","MEDGEN:1826070"],"synonyms":[{"name":"MYO5B deficiency","type":"exact"}],"termid":"MONDO:0018804","xrefs":{"Monarch":{"xref_id":"0018804"}}}


id: PBO:0056882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MICOS10 pseudogene 2","termid":"PBO:0056882"}


id: PBO:0081123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger homeobox 2","termid":"PBO:0081123"}


id: GO:1990508
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Cyclin-dependent kinase complex which reversibly associates with the Mediator complex. In Saccharomyces cerevisiae it consists of SSN2, SSN3, SSN8 and SRB8.","definition_xrefs":["PMID:12200444","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear cyclin-dependent protein kinase holoenzyme complex","termid":"GO:0019908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"CKM complex","synonyms":[{"name":"CDK8 kinase module","type":"exact"},{"name":"SRB8-SRB11 complex","type":"exact"},{"name":"SRB8/9/10/11 complex","type":"exact"}],"termid":"GO:1990508"}


id: MONDO:0016166
data:
  {"annotated_genes":["SJAG_01151"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87582],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007767"},{"annotations":[87583],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007768"}]},"cv_name":"mondo","definition":"An instance of hyperparathyroidism that is caused by an inherited genomic modification in an individual.","definition_xrefs":["MONDO:patterns/hereditary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperparathyroidism","termid":"MONDO:0001741"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01151":null},"genotype_count":0,"is_obsolete":false,"name":"hereditary hyperparathyroidism","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5680826","OMIMPS:145000","MEDGEN:1843372","Orphanet:208596","GARD:20408"],"synonyms":[{"name":"genetic hyperparathyroidism","type":"exact"}],"termid":"MONDO:0016166","terms_by_termid":{"MONDO:0007767":null,"MONDO:0007768":null},"xrefs":{"Monarch":{"xref_id":"0016166"}}}


id: PBO:0049429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GUSB pseudogene 6","termid":"PBO:0049429"}


id: MONDO:0100061
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A peripheral neuropathy that is characterized by variants in PRPS1, which causes decreased or impaired function of the PRPS1 enzyme, and presents as a range of peripheral neuropathies that can include features of Charcot-Marie Tooth syndrome, Arts syndrome, or nonsyndromic hearing loss.","definition_xrefs":["PMID:27886419","PMID:25182139","PMID:25785835","PMID:27256512","PMID:17701900","PMID:20021999","PMID:25491489"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"PRPS1 deficiency disorder","synonyms":[{"name":"PRPS1 deficiency disorder","type":"exact"},{"name":"PRPS1-related CMTX5/Arts syndrome/XLNSHL","type":"exact"}],"termid":"MONDO:0100061","xrefs":{"Monarch":{"xref_id":"0100061"}}}


id: GO:1900406
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of conjugation with cellular fusion.","definition_xrefs":["GOC:mah","GOC:TermGenie","PMID:1112904"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of conjugation with cellular fusion by regulation of transcription from RNA polymerase II promoter (obsolete GO:1900406)","termid":"GO:1900406"}


id: GO:0032639
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of TRAIL due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["PMID:9311998","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tumor necrosis factor superfamily cytokine production","termid":"GO:0071706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"TRAIL production","secondary_identifiers":["GO:0045553"],"synonyms":[{"name":"TRAIL biosynthetic process","type":"narrow"}],"termid":"GO:0032639"}


id: GO:0047769
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-arogenate = L-phenylalanine + H2O + CO2.","definition_xrefs":["EC:4.2.1.91"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"arogenate dehydratase activity","secondary_identifiers":["RHEA:12536","MetaCyc:CARBOXYCYCLOHEXADIENYL-DEHYDRATASE-RXN"],"synonyms":[{"name":"L-arogenate hydro-lyase (decarboxylating)","type":"related"},{"name":"L-arogenate hydro-lyase (decarboxylating; L-phenylalanine-forming)","type":"related"},{"name":"carboxycyclohexadienyl dehydratase activity","type":"exact"}],"termid":"GO:0047769"}


id: PBO:0080569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WDFY3 antisense RNA 1","termid":"PBO:0080569"}


id: GO:0004668
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + L-arginyl-[protein] = L-citrullyl-[protein] + NH4+, resulting in citrullination of the target protein. This reaction is calcium-dependent.","definition_xrefs":["PMID:27393304"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016810","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"protein-arginine deiminase activity","secondary_identifiers":["Reactome:R-HSA-3247569","EC:3.5.3.15","Reactome:R-HSA-1183128","RHEA:18089","MetaCyc:PROTEIN-ARGININE-DEIMINASE-RXN"],"synonyms":[{"name":"peptidylarginine deiminase activity","type":"related"},{"name":"protein-L-arginine iminohydrolase activity","type":"related"}],"termid":"GO:0004668"}


id: MONDO:0859305
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with eye movement abnormalities and ataxia","secondary_identifiers":["UMLS:C5774241","MEDGEN:1824014","DOID:0081275","OMIM:620094"],"termid":"MONDO:0859305","xrefs":{"Monarch":{"xref_id":"0859305"}}}


id: PBO:0088813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-amylase homolog Aah2","termid":"PBO:0088813"}


id: PBO:0081484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 366","termid":"PBO:0081484"}


id: PBO:0047491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferrochelatase pseudogene 1","termid":"PBO:0047491"}


id: MOD:00524
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod N-linked glycosylation","definition_xrefs":["Unimod:156","RESID:AA0151#var"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"},{"relation_name":"is_a","term_name":"complex glycosylation","termid":"MOD:00725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"Hex1HexNAc2dHex2 N4-glycosylated asparagine","synonyms":[{"name":"Hex(1)HexNAc(2)dHex(2)","type":"related"},{"name":"Hex1HexNAc2dHex2","type":"related"}],"termid":"MOD:00524"}


id: GO:0033793
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: 2',4,4',6'-tetrahydroxychalcone 4'-O-beta-D-glucoside + H+ + O2 = aureusidin 6-O-beta-glucoside + H2O, 2 2',3,4,4',6'-pentahydroxychalcone 4'-O-beta-D-glucoside + 2 H+ + O2 = 2 aureusidin 6-O-beta-glucoside + 2 H2O, and 2',3,4,4',6'-pentahydroxychalcone 4'-O-beta-D-glucoside + H+ + O2 = bracteatin 6-O-beta-glucoside + H2O. This activity consists of two separate chemical transformations: 3-hydroxylation and oxidative cyclization (2',-dehydrogenation).","definition_xrefs":["EC:1.21.3.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with oxygen as acceptor","termid":"GO:0046993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"aureusidin synthase activity","synonyms":[{"name":"2',4,4',6'-tetrahydroxychalcone:oxygen oxidoreductase activity","type":"related"}],"termid":"GO:0033793"}


id: PBO:0050470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOXA cluster antisense RNA 2","termid":"PBO:0050470"}


id: PBO:0063643
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase 1","termid":"PBO:0063643"}


id: MONDO:0010147
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tongue, pigmented fungiform papillae of","secondary_identifiers":["MEDGEN:336411","OMIM:275250","UMLS:C1848756"],"synonyms":[{"name":"tongue, pigmented fungiform papillae of","type":"exact"}],"termid":"MONDO:0010147","xrefs":{"Monarch":{"xref_id":"0010147"}}}


id: PBO:0002548
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pombe Mediator Component","termid":"PBO:0002548"}


id: PBO:0078400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Phe (anticodon GAA) 10-1","termid":"PBO:0078400"}


id: PBO:0060510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NSF attachment protein beta","termid":"PBO:0060510"}


id: FYPO:0007542
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of double-stranded DNA binding by a gene product is normal (i.e. indistinguishable from wild type). The relevant gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal DNA binding","termid":"FYPO:0000655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000653"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000653","FYPO:0000652"],"is_obsolete":false,"name":"normal double-stranded DNA binding","synonyms":[{"name":"normal dsDNA binding","type":"exact"}],"termid":"FYPO:0007542"}


id: FYPO:0003727
data:
  {"alleles_by_uniquename":{"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121166],"is_not":false,"summary":null,"term":"FYPO:0003727"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the glycan moiety of a glycoprotein in the cell wall does not contain galactose residues. In wild-type cells, glycoprotein glycans contain mannose and galactose residues in a 1:1.2 ratio, and the galactose residues are connected by alpha-1,2 linkages.","definition_xrefs":["PomBase:mah","PMID:11378902","PMID:9125114"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell wall during vegetative growth","termid":"FYPO:0002628"},{"relation_name":"is_a","term_name":"galactose absent from glycoprotein glycan","termid":"FYPO:0003291"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04697":null},"genotype_count":1,"genotypes_by_uniquename":{"gms1delta":{"display_name":"gms1delta","display_uniquename":"gms1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04697:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0002494"},{"rel_name":"output_of","termid":"FYPO:0002274"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0003290"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0002274","FYPO:0003290","FYPO:0002494"],"is_obsolete":false,"name":"galactose absent from cell wall glycoprotein glycan","references_by_uniquename":{"PMID:36058798":null},"single_locus_annotated_genes":["SJAG_04697"],"single_locus_genotype_uniquenames":["gms1delta"],"synonyms":[{"name":"abolished galactosylation of cell surface proteins","type":"related"},{"name":"alpha 1,2-linked galactose residues absent from cell wall glycoprotein","type":"exact"},{"name":"galactose absent from cell wall glycoprotein oligosaccharide","type":"related"},{"name":"galactose absent from glycoprotein glycan in cell wall","type":"exact"}],"termid":"FYPO:0003727","terms_by_termid":{"FYPO:0003727":null,"FYPO_EXT:0000001":null}}


id: SO:0000343
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"experimental_feature","termid":"SO:0001410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"match","termid":"SO:0000343"}


id: FYPO:0002063
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a 3'-5'-exoribonuclease activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal ribonuclease activity","termid":"FYPO:0003821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000654","FYPO:0000707","FYPO:0000661"],"is_obsolete":false,"name":"abnormal 3'-5'-exoribonuclease activity","termid":"FYPO:0002063"}


id: GO:0000171
data:
  {"annotated_genes":["SJAG_04582","SJAG_03425","SJAG_00955","SJAG_01551","SJAG_06613","SJAG_03796","SJAG_04916","SJAG_03952","SJAG_02547","SJAG_01623","SJAG_02553","SJAG_03234"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73113,96661,98451,98739,106520,106738,107626,107627,115489,117307,117394,120616],"is_not":false,"summary":null,"term":"GO:0000171"}]},"cv_name":"molecular_function","definition":"Catalysis of the site-specific cleavage of RNA by a catalytic RNA-mediated mechanism; substrates include the A3 site in the ITS1 of pre-rRNA.","definition_xrefs":["PMID:17881380"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA endonuclease activity","termid":"GO:0004521"},{"relation_name":"is_a","term_name":"hydrolase activity, acting on ester bonds","termid":"GO:0016788"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00955":null,"SJAG_01551":null,"SJAG_01623":null,"SJAG_02547":null,"SJAG_02553":null,"SJAG_03234":null,"SJAG_03425":null,"SJAG_03796":null,"SJAG_03952":null,"SJAG_04582":null,"SJAG_04916":null,"SJAG_06613":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0003674","GO:0003824","GO:0140098"],"is_obsolete":false,"name":"ribonuclease MRP activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:RNase_MRP"],"synonyms":[{"name":"RNase MRP","type":"exact"}],"termid":"GO:0000171","terms_by_termid":{"GO:0000171":null}}


id: FYPO:0007357
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the cell does not contain a detectable Smp focus.","definition_xrefs":["PMID:31811152","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component","termid":"FYPO:0000287"},{"relation_name":"is_a","term_name":"altered level of macromolecular complex","termid":"FYPO:0007316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"Smp focus absent from cell","synonyms":[{"name":"Sme2 focus absent from cell","type":"narrow"},{"name":"Smp dot complex absent from cell","type":"exact"},{"name":"Smp focus absent from cell during meiotic cell cycle","type":"exact"},{"name":"absence of Smp focus","type":"exact"},{"name":"absent Smp focus","type":"exact"}],"termid":"FYPO:0007357"}


id: PBO:0084188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Histone H1, linker histone with roles in meiosis and sporulation; decreasing levels early in sporulation may promote meiosis, and increasing levels during sporulation facilitate compaction of spore chromatin; binds to promoters and within genes in mature spores; may be recruited by Ume6p to promoter regions, contributing to transcriptional repression outside of meiosis; suppresses DNA repair involving homologous recombination","termid":"PBO:0084188"}


id: GO:0046740
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The transport of a virus between adjacent cells in a multicellular organism.","definition_xrefs":["GOC:jl","ISBN:0781718325","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport of virus in multicellular host","termid":"GO:0046739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"transport of virus in host, cell to cell","secondary_identifiers":["VZ:1018"],"synonyms":[{"name":"cell to cell spread of virus within host","type":"exact"},{"name":"intercellular virus transport","type":"exact"},{"name":"spread of virus in host, cell to cell","type":"related"},{"name":"spread of virus within host, cell to cell","type":"exact"},{"name":"viral spread within host, cell to cell","type":"exact"}],"termid":"GO:0046740"}


id: GO:0019597
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of (R)-mandelate into other compounds, including benzoate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzoate metabolic process","termid":"GO:0018874"},{"relation_name":"is_a","term_name":"mandelate catabolic process","termid":"GO:0019596"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"(R)-mandelate catabolic process to benzoate","synonyms":[{"name":"(R)-mandelate breakdown to benzoate","type":"exact"},{"name":"(R)-mandelate degradation to benzoate","type":"exact"}],"termid":"GO:0019597"}


id: MONDO:1010492
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ventricular septal defect that occurs in pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ventricular septal defect, non-human animal","termid":"MONDO:1010022"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ventricular septal defect, pig","secondary_identifiers":["OMIA:001041-9823"],"termid":"MONDO:1010492","xrefs":{"Monarch":{"xref_id":"1010492"}}}


id: MONDO:0014694
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive spondylocostal dysostosis in which the cause of the disease is a mutation in the RIPPLY2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive spondylocostal dysostosis","termid":"MONDO:0010180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005066","MONDO:0005497","MONDO:0024322"],"is_obsolete":false,"name":"spondylocostal dysostosis 6, autosomal recessive","secondary_identifiers":["MEDGEN:899713","OMIM:616566","DOID:0112360","GARD:12807","UMLS:C4225279"],"synonyms":[{"name":"RIPPLY2 autosomal recessive spondylocostal dysostosis","type":"exact"},{"name":"SCDO6","type":"related"},{"name":"autosomal recessive spondylocostal dysostosis caused by mutation in RIPPLY2","type":"exact"},{"name":"spondylocostal dysostosis 6","type":"related"},{"name":"spondylocostal dysostosis 6, autosomal recessive","type":"exact"}],"termid":"MONDO:0014694","xrefs":{"Monarch":{"xref_id":"0014694"}}}


id: MONDO:0005182
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm characterized by the presence of cystic structures lined by serous epithelial cells in a fibrotic stroma. Most commonly the primary site is the ovary, but serous cystadenofibromas can occur in the pancreas as well.","definition_xrefs":["PMID:16025006"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroma","termid":"MONDO:0005167"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serous cystadenofibroma","secondary_identifiers":["NCIT:C40032","EFO:0002510"],"termid":"MONDO:0005182","xrefs":{"Monarch":{"xref_id":"0005182"}}}


id: MONDO:0001970
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hypokalemic periodic paralysis (obsolete MONDO:0001970)","termid":"MONDO:0001970","xrefs":{"Monarch":{"xref_id":"0001970"}}}


id: GO:0036208
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that decreases the frequency, rate or extent of expression of a histone-encoding gene. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein.","definition_xrefs":["GOC:krc","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone gene expression (obsolete GO:0036208)","synonyms":[{"name":"down-regulation of histone gene expression","type":"exact"},{"name":"downregulation of histone gene expression","type":"exact"},{"name":"inhibition of histone gene expression","type":"narrow"},{"name":"negative regulation of expression of histone-encoding gene","type":"exact"}],"termid":"GO:0036208"}


id: MONDO:0003710
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An ovarian malignant germ cell tumor characterized by the presence of at least two different germ cell components. At least one of the germ cell components is primitive. The most common combination of germ cell elements is dysgerminoma and yolk sac tumor.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ovarian primitive germ cell tumor","termid":"MONDO:0003408"},{"relation_name":"is_a","term_name":"mixed germ cell tumor","termid":"MONDO:0015864"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"ovarian mixed germ cell neoplasm","secondary_identifiers":["NCIT:C8114","UMLS:C0280135","MEDGEN:83602","DOID:5936","ONCOTREE:OMGCT"],"synonyms":[{"name":"mixed germ cell neoplasm of ovary","type":"exact"},{"name":"mixed germ cell neoplasm of the ovary","type":"exact"},{"name":"mixed germ cell tumor","type":"related"},{"name":"mixed germ cell tumor of ovary","type":"exact"},{"name":"mixed germ cell tumor of the ovary","type":"exact"},{"name":"mixed germ cell tumour","type":"related"},{"name":"mixed germ cell tumour of ovary","type":"exact"},{"name":"mixed germ cell tumour of the ovary","type":"exact"},{"name":"ovarian mixed germ cell neoplasm","type":"exact"},{"name":"ovarian mixed germ cell tumor","type":"exact"},{"name":"ovarian mixed germ cell tumour","type":"exact"},{"name":"ovary mixed germ cell tumor","type":"exact"},{"name":"ovary mixed germ cell tumour","type":"exact"}],"termid":"MONDO:0003710","xrefs":{"Monarch":{"xref_id":"0003710"}}}


id: GO:1990715
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an mRNA molecule coding sequence (CDS).","definition_xrefs":["GOC:kmv","PMID:25805859","SO:0000316"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA binding","termid":"GO:0003729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003723","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"mRNA CDS binding","synonyms":[{"name":"mRNA coding region binding","type":"exact"},{"name":"mRNA coding sequence binding","type":"exact"}],"termid":"GO:1990715"}


id: PBO:0012860
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hsk1 Interacting Molecule","termid":"PBO:0012860"}


id: GO:0004349
data:
  {"annotated_genes":["SJAG_03457"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71935],"is_not":false,"summary":null,"term":"GO:0004349"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-glutamate + ATP = L-glutamyl 5-phosphate + ADP + H+.","definition_xrefs":["EC:2.7.2.11","RHEA:14877"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, carboxyl group as acceptor","termid":"GO:0016774"},{"relation_name":"is_a","term_name":"amino acid kinase activity","termid":"GO:0019202"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016301","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"glutamate 5-kinase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["KEGG_REACTION:R00239","MetaCyc:GLUTKIN-RXN"],"synonyms":[{"name":"ATP-L-glutamate 5-phosphotransferase activity","type":"related"},{"name":"ATP:L-glutamate 5-phosphotransferase activity","type":"related"},{"name":"ATP:gamma-L-glutamate phosphotransferase activity","type":"related"},{"name":"gamma-glutamate kinase activity","type":"related"},{"name":"gamma-glutamyl kinase activity","type":"related"},{"name":"glutamate kinase activity","type":"related"}],"termid":"GO:0004349","terms_by_termid":{"GO:0004349":null}}


id: PBO:0073760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC2A13 pseudogene 1","termid":"PBO:0073760"}


id: PBO:0069559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 831, pseudogene","termid":"PBO:0069559"}


id: GO:1903876
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to 11-deoxycortisol.","definition_xrefs":["PMID:10802282","GO_REF:0000067","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol binding","termid":"GO:0043178"},{"relation_name":"is_a","term_name":"steroid hormone binding","termid":"GO:1990239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008289"}],"interesting_parent_ids":["GO:0005488","GO:0008289","GO:0003674"],"is_obsolete":false,"name":"11-deoxycortisol binding","termid":"GO:1903876"}


id: MONDO:0015701
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A severe combined immunodeficiency that results from defective IL7R expression causes T-B+NK+ SCID. Loss of IL-7R function leads to the loss of an antiapoptotic signal, resulting in a loss of T-cell selection in thymus.","definition_xrefs":["DOID:0060015"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"},{"relation_name":"is_a","term_name":"T-B+ severe combined immunodeficiency","termid":"MONDO:0044200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"T-B+ severe combined immunodeficiency due to IL-7Ralpha deficiency","secondary_identifiers":["MEDGEN:1842915","Orphanet:169154","UMLS:C5679577","GARD:17051"],"synonyms":[{"name":"IL-7R","type":"exact"},{"name":"IL-7Ralpha deficiency","type":"exact"},{"name":"T-B+ SCID due to IL-7Ralpha deficiency","type":"exact"},{"name":"interleukin-7 receptor alpha deficiency","type":"related"}],"termid":"MONDO:0015701","xrefs":{"Monarch":{"xref_id":"0015701"}}}


id: MONDO:0017036
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Langerhans cell histiocytosis in childhood and adulthood (obsolete MONDO:0017036)","secondary_identifiers":["Orphanet:264955"],"synonyms":[{"name":"Langerhans cell granulomatosis in childhood and adulthood","type":"exact"},{"name":"histiocytosis X in childhood and adulthood","type":"exact"}],"termid":"MONDO:0017036","xrefs":{"Monarch":{"xref_id":"0017036"}}}


id: PR:O60061
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A dolichyl-phosphate beta-glucosyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR10859:SF42","OMA:SCHPO03989"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichyl-phosphate beta-glucosyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC56F2.10c","secondary_identifiers":["UniProtKB:O60061"],"synonyms":[{"name":"DolP-glucosyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ALG5","type":"exact"},{"name":"asparagine-linked glycosylation protein 5 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60061"}


id: PBO:0048427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamine amidotransferase class 1 domain containing 3","termid":"PBO:0048427"}


id: GO:0030122
data:
  {"annotated_genes":["SJAG_00800","SJAG_01167","SJAG_00104","SJAG_02805"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[58827,76346,80144,110309],"is_not":false,"summary":null,"term":"GO:0030122"}]},"cv_name":"cellular_component","definition":"A heterotetrameric AP-type membrane coat adaptor complex that consists of alpha, beta2, mu2 and sigma2 subunits, and links clathrin to the membrane surface of a vesicle, and the cargo receptors during receptor/clathrin mediated endocytosis. Vesicles with AP-2-containing coats are normally found primarily near the plasma membrane, on endocytic vesicles. In at least humans, the AP-2 complex can be heterogeneric due to the existence of multiple subunit isoforms encoded by different alpha genes (alphaA and alphaC).","definition_xrefs":["GOC:mah","PMID:10611976","PMID:21097499","PMID:22022230","PMID:24322426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clathrin adaptor complex","termid":"GO:0030131"},{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"part_of","term_name":"clathrin coat of endocytic vesicle","termid":"GO:0030128"},{"relation_name":"part_of","term_name":"clathrin coat of coated pit","termid":"GO:0030132"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00104":null,"SJAG_00800":null,"SJAG_01167":null,"SJAG_02805":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005886","GO:0005575","GO:0031410"],"is_obsolete":false,"name":"AP-2 adaptor complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"HA2","type":"exact"},{"name":"HA2 clathrin adaptor","type":"exact"}],"termid":"GO:0030122","terms_by_termid":{"GO:0030122":null}}


id: FYECO:0000422
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in YES containing yeast extract and other components, but without glucose. The concentration of glucose is very low (eg around 0.1%).","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping rich medium","termid":"FYECO:0000080"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"no glucose YES","termid":"FYECO:0000422"}


id: FYPO:0004737
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount of filamentous actin (F-actin) in the actomyosin contractile ring is lower than normal during early mitosis (before anaphase).","definition_xrefs":["PomBase:mah","PMID:25688133"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring","termid":"FYPO:0004736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0004803","FYPO:0001320","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"decreased F-actin level in actomyosin contractile ring during early mitosis","synonyms":[{"name":"decreased F-actin level in actomyosin contractile ring during early mitosis during mitotic cell cycle","type":"related"},{"name":"decreased F-actin level in actomyosin contractile ring during early mitosis during vegetative growth","type":"exact"},{"name":"decreased F-actin level in mitotic contractile ring during early mitosis","type":"exact"},{"name":"decreased abundance of F-actin in the actomyosin contractile ring in early mitosis","type":"exact"},{"name":"decreased actomyosin contractile ring F-actin level during early mitosis","type":"exact"},{"name":"decreased filamentous actin level in actomyosin contractile ring during early mitosis","type":"exact"}],"termid":"FYPO:0004737"}


id: MONDO:0019858
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Idiopathic congenital hypothyroidism is a type of primary congenital hypothyroidism whose cause and prevalence are unknown.","definition_xrefs":["Orphanet:95717"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital hypothyroidism","termid":"MONDO:0018612"},{"relation_name":"is_a","term_name":"idiopathic disease","termid":"MONDO:0700007"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"idiopathic congenital hypothyroidism","secondary_identifiers":["GARD:19298","SCTID:717334008","UMLS:C4273913","MEDGEN:901252"],"termid":"MONDO:0019858","xrefs":{"Monarch":{"xref_id":"0019858"}}}


id: PBO:0052789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 28","termid":"PBO:0052789"}


id: PBO:0076790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tectorin beta","termid":"PBO:0076790"}


id: PBO:0091114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligosaccharyltransferase subunit Ost4","termid":"PBO:0091114"}


id: PBO:0018271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO activating enzyme E1-type Uba2 (predicted)","termid":"PBO:0018271"}


id: PBO:0041922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CBR4 divergent transcript","termid":"PBO:0041922"}


id: MONDO:0001692
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by recurrent sexual urges, fantasies, or behaviors involving sexual activity with a prepubescent child or children.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paraphilic disorder","termid":"MONDO:0000596"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pedophilia","secondary_identifiers":["DOID:13351","ICD9:302.2","MESH:D010378","MEDGEN:18340","NCIT:C94355","SCTID:84002002","ICD10CM:F65.4","UMLS:C0030764"],"synonyms":[{"name":"Paedophilia","type":"exact"}],"termid":"MONDO:0001692","xrefs":{"Monarch":{"xref_id":"0001692"}}}


id: PBO:0055658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3098","termid":"PBO:0055658"}


id: PBO:0086770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; small ORF identified by SAGE; deletion strains are moderately sensitive to the radiomimetic drug bleomycin","termid":"PBO:0086770"}


id: MONDO:0004464
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A metaplastic lesion of the urothelium found in the urethra. It is characterized by the presence of aggregates of cuboidal or hobnail cells and represents a reaction of the urothelium to injury caused by instrumentation, surgery or calculi.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benign urethral neoplasm","termid":"MONDO:0004177"},{"relation_name":"is_a","term_name":"nephrogenic adenoma","termid":"MONDO:0004191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"nephrogenic adenoma of the urethra","secondary_identifiers":["NCIT:C7416","DOID:8109","MEDGEN:277847","UMLS:C1336889"],"synonyms":[{"name":"nephrogenic adenoma of urethra","type":"exact"},{"name":"urethra nephrogenic adenoma","type":"exact"},{"name":"urethral nephrogenic adenoma","type":"exact"}],"termid":"MONDO:0004464","xrefs":{"Monarch":{"xref_id":"0004464"}}}


id: PBO:0083346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps the verified gene DDR48/YML173W","termid":"PBO:0083346"}


id: PBO:0050381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A3 pseudogene 5","termid":"PBO:0050381"}


id: MONDO:0012779
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"celiac disease","termid":"MONDO:0005130"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"celiac disease, susceptibility to, 10","secondary_identifiers":["MEDGEN:394326","OMIM:612008","UMLS:C2677604"],"synonyms":[{"name":"CELIAC10","type":"exact"},{"name":"celiac disease, susceptibility to, 10","type":"exact"},{"name":"gluten-sensitive enteropathy, susceptibility to, 10","type":"related"}],"termid":"MONDO:0012779","xrefs":{"Monarch":{"xref_id":"0012779"}}}


id: MONDO:0024523
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any aortic valve disease in which the cause of the disease is a mutation in the NOTCH1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial bicuspid aortic valve","termid":"MONDO:0007194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"aortic valve disease 1","secondary_identifiers":["DOID:0080333","GARD:18470","MEDGEN:854610","OMIM:109730","UMLS:C3887892"],"synonyms":[{"name":"AOVD1","type":"exact"},{"name":"NOTCH1 aortic valve disease","type":"exact"},{"name":"Notch1 aortic valve disease","type":"exact"},{"name":"aortic stenosis, calcific","type":"related"},{"name":"aortic valve disease","type":"related"},{"name":"aortic valve disease 1","type":"exact"},{"name":"aortic valve disease caused by mutation in NOTCH1","type":"exact"},{"name":"aortic valve disease caused by mutation in Notch1","type":"exact"},{"name":"aortic valve, bicuspid","type":"related"},{"name":"aortic valve, calcification of","type":"related"},{"name":"bicuspid aortic valve","type":"related"}],"termid":"MONDO:0024523","xrefs":{"Monarch":{"xref_id":"0024523"}}}


id: GO:0075042
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of turgor formation in the symbiont appressorium.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of establishment of turgor in appressorium (obsolete GO:0075042)","termid":"GO:0075042"}


id: MONDO:0012255
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"chromosome inversion disorder","termid":"MONDO:0043678"},{"relation_name":"is_a","term_name":"chromosome 18 disorder","termid":"MONDO:0700125"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 18 pericentric inversion","secondary_identifiers":["MESH:C563734","UMLS:C1836305","MEDGEN:322886","OMIM:609334"],"synonyms":[{"name":"chromosome 18 pericentric inversion","type":"exact"}],"termid":"MONDO:0012255","xrefs":{"Monarch":{"xref_id":"0012255"}}}


id: PBO:0056919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MINDY lysine 48 deubiquitinase 4","termid":"PBO:0056919"}


id: PBO:0039617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annexin A2 receptor","termid":"PBO:0039617"}


id: FYPO:0005796
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which microtubule bundles are shorter than normal and have an abnormal structure. Typically, microtubule bundles do not reach the cell tips and are not aligned parallel to the long axis of the cell.","definition_xrefs":["PomBase:mah","PMID:11007487"],"direct_ancestors":[{"relation_name":"is_a","term_name":"short microtubule bundle","termid":"FYPO:0005797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002399","FYPO:0001320","FYPO:0000054","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"short disorganized microtubule bundle","synonyms":[{"name":"short disorganised microtubule bundle","type":"exact"},{"name":"short disorganized microtubule array","type":"related"},{"name":"short microtubule bundle with abnormal structure","type":"exact"}],"termid":"FYPO:0005796"}


id: GO:0002707
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of lymphocyte mediated immunity.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of leukocyte mediated immunity","termid":"GO:0002704"},{"relation_name":"is_a","term_name":"regulation of lymphocyte mediated immunity","termid":"GO:0002706"},{"relation_name":"negatively_regulates","term_name":"lymphocyte mediated immunity","termid":"GO:0002449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of lymphocyte mediated immunity","synonyms":[{"name":"down regulation of lymphocyte mediated immunity","type":"exact"},{"name":"down-regulation of lymphocyte mediated immunity","type":"exact"},{"name":"downregulation of lymphocyte mediated immunity","type":"exact"},{"name":"inhibition of lymphocyte mediated immunity","type":"narrow"}],"termid":"GO:0002707"}


id: PBO:0080489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand factor A domain containing 8","termid":"PBO:0080489"}


id: PBO:0073927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 16 member 14 pseudogene 1","termid":"PBO:0073927"}


id: PBO:0087308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Small heat shock protein (sHSP) with chaperone activity; forms barrel-shaped oligomers that suppress unfolded protein aggregation; involved in cytoskeleton reorganization after heat shock; protein abundance increases and forms cytoplasmic foci in response to DNA replication stress","termid":"PBO:0087308"}


id: GO:0071358
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a type III interferon stimulus. Interferon lambda is the only member of the type III interferon found so far.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to type III interferon","termid":"GO:0034342"},{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to type III interferon","synonyms":[{"name":"cellular response to interferon-lambda","type":"narrow"},{"name":"cellular response to type III IFN","type":"exact"}],"termid":"GO:0071358"}


id: GO:2000480
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cAMP-dependent protein kinase activity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein serine/threonine kinase activity","termid":"GO:0071901"},{"relation_name":"is_a","term_name":"regulation of cAMP-dependent protein kinase activity","termid":"GO:2000479"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cAMP-dependent protein kinase activity","synonyms":[{"name":"negative regulation of 3',5' cAMP-dependent protein kinase activity","type":"exact"},{"name":"negative regulation of 3',5'-cAMP-dependent protein kinase activity","type":"exact"},{"name":"negative regulation of AMPK","type":"related"},{"name":"negative regulation of ATP:protein phosphotransferase (cAMP-dependent) activity","type":"exact"},{"name":"negative regulation of PKA","type":"related"},{"name":"negative regulation of PKA C","type":"related"},{"name":"negative regulation of STK22","type":"related"},{"name":"negative regulation of adenosine 3',5'-cyclophosphate-dependent protein kinase activity","type":"exact"},{"name":"negative regulation of cAMP-dependent protein kinase, intrinsic catalyst activity","type":"exact"},{"name":"negative regulation of cyclic AMP-dependent protein kinase activity","type":"exact"},{"name":"negative regulation of protein kinase A activity","type":"related"}],"termid":"GO:2000480"}


id: PBO:0086392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative component of the protein phosphatase type 2A complex","termid":"PBO:0086392"}


id: MONDO:0008070
data:
  {"annotated_genes":["SJAG_03145"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87205],"is_not":false,"summary":null,"term":"MONDO:0008070"}]},"cv_name":"mondo","definition":"An inherited myopathy caused by mutations in the ACTA1 gene, encoding actin, alpha skeletal muscle. The phenotype is highly variable, and as such attempts at classification by clinical features is not optimal. Generally, affected individuals have generalized muscle weakness, typically involving proximal muscles, the face, bulbar and respiratory muscles.","definition_xrefs":["NCIT:C129870"],"direct_ancestors":[{"relation_name":"is_a","term_name":"severe congenital nemaline myopathy","termid":"MONDO:0015735"},{"relation_name":"is_a","term_name":"intermediate nemaline myopathy","termid":"MONDO:0015736"},{"relation_name":"is_a","term_name":"typical nemaline myopathy","termid":"MONDO:0015737"},{"relation_name":"is_a","term_name":"childhood-onset nemaline myopathy","termid":"MONDO:0015738"},{"relation_name":"is_a","term_name":"alpha-actinopathy","termid":"MONDO:0100084"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03145":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005336"],"is_obsolete":false,"name":"congenital myopathy 2a, typical, autosomal dominant","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:10111","OMIM:161800","Orphanet:98904","MESH:C579880","SCTID:702349003","DOID:0110927","MESH:C580202","UMLS:C3711389","MEDGEN:777997"],"synonyms":[{"name":"ACTA1 nemaline myopathy","type":"exact"},{"name":"CMYO2A","type":"exact"},{"name":"NEM3","type":"related"},{"name":"actin accumulation myopathy","type":"exact"},{"name":"actin accumulation myopathy (disorder)","type":"exact"},{"name":"actin myopathy","type":"exact"},{"name":"congenital myopathy 2a, typical, autosomal dominant","type":"exact"},{"name":"congenital myopathy with excess of thin filaments","type":"exact"},{"name":"myopathy, actin, congenital, with Excess of thin myofilaments","type":"related"},{"name":"myopathy, actin, congenital, with cores","type":"related"},{"name":"nemaline myopathy 3","type":"related"},{"name":"nemaline myopathy 3, autosomal dominant or recessive","type":"exact"},{"name":"nemaline myopathy 3, with intranuclear rods","type":"related"},{"name":"nemaline myopathy caused by mutation in ACTA1","type":"exact"},{"name":"nemaline myopathy type 3","type":"exact"}],"termid":"MONDO:0008070","terms_by_termid":{"MONDO:0008070":null},"xrefs":{"Monarch":{"xref_id":"0008070"}}}


id: PBO:0035715
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_methylation_during_vegetative_growth","termid":"PBO:0035715"}


id: FYECO:0000383
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which cells are grown in a culture, and wild-type cells of the opposite mating type are added to the culture.","definition_xrefs":["PomBase:mah","PMID:30279276","PomBase:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping experimental environment","termid":"FYECO:0000132"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wild type cells of opposite mating type added to culture","synonyms":[{"name":"mating with WT","type":"related"}],"termid":"FYECO:0000383"}


id: GO:0071427
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a ribonucleoprotein complex that contains messenger RNA from the nucleus to the cytoplasm.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete mRNA-containing ribonucleoprotein complex export from nucleus (obsolete GO:0071427)","synonyms":[{"name":"mRNA-containing RNP export from nucleus","type":"exact"},{"name":"mRNA-containing ribonucleoprotein complex export from cell nucleus","type":"exact"},{"name":"mRNA-containing ribonucleoprotein complex nucleus export","type":"exact"},{"name":"mRNA-containing ribonucleoprotein complex transport from nucleus to cytoplasm","type":"exact"}],"termid":"GO:0071427"}


id: PR:Q9UQW9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ornithine decarboxylase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01927"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ornithine decarboxylase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC144.04c","secondary_identifiers":["UniProtKB:Q9UQW9"],"synonyms":[{"name":"ODC (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ODC1","type":"exact"}],"termid":"PR:Q9UQW9"}


id: PBO:0088552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gpl1-Gih35-Wdr83 complex WD repeat subunit Wdr83","termid":"PBO:0088552"}


id: GO:0062059
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a FACT complex.","definition_xrefs":["PMID:10682845"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"FACT complex binding","termid":"GO:0062059"}


id: GO:0033463
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes a GGA codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0060090","GO:0003723"],"is_obsolete":false,"name":"GGA codon-amino acid adaptor activity","synonyms":[{"name":"glycine tRNA","type":"related"}],"termid":"GO:0033463"}


id: MONDO:0016609
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammatory myopathy with abundant macrophages is a rare inflammatory myopathy characterized by diffuse destructive infiltration of CD68+ macrophages into the fascia rather than muscle fibers in muscle biopsies, proximal muscle weakness and myalgia with or without scaly dermatomyositis-like or atypical non-dermatomyositis-like skin lesions, elevation of creatine kinase levels and thickening of muscle fascia in muscle MRI.","definition_xrefs":["Orphanet:247718"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acquired idiopathic inflammatory myopathy","termid":"MONDO:0020122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"inflammatory myopathy with abundant macrophages","secondary_identifiers":["MEDGEN:1638939","UMLS:C4707791","SCTID:766706007","GARD:20663"],"synonyms":[{"name":"IMAM","type":"exact"},{"name":"imam","type":"exact"}],"termid":"MONDO:0016609","xrefs":{"Monarch":{"xref_id":"0016609"}}}


id: PBO:0064069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 103","termid":"PBO:0064069"}


id: PBO:0113497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Translation initiation factor eIF4G and scaffold protein; subunit of the mRNA cap-binding protein complex (eIF4F) with eIF4E (Cdc33p) and eIF4A (Tif1p/Tif2p); stimulates the ATPase and helicase activities of eIF4A synergistically with eIF4G; required with eIF4E for Ded1p-mediated stimulation of mRNA recruitment during 48S preinitiation complex (PIC) assembly; association with Pab1p mediates poly(A) tail-stimulated translation; role in assembly of PET region in biogenesis of 60S ribosomal subunit","termid":"PBO:0113497"}


id: PBO:0091359
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dpb4-interacting, RRM and IDR-containing factor","termid":"PBO:0091359"}


id: MONDO:0859358
data:
  {"annotated_genes":["SJAG_01240"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87470],"is_not":false,"summary":null,"term":"MONDO:0859358"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial isolated dilated cardiomyopathy","termid":"MONDO:0700335"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01240":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"cardiomyopathy, dilated, 2H","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:620203","MEDGEN:1824069","UMLS:C5774296"],"termid":"MONDO:0859358","terms_by_termid":{"MONDO:0859358":null},"xrefs":{"Monarch":{"xref_id":"0859358"}}}


id: MONDO:0003240
data:
  {"annotated_genes":["SJAG_04300","SJAG_01941","SJAG_01970","SJAG_02463","SJAG_01926","SJAG_03689","SJAG_04067","SJAG_03453"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88635],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007681"},{"annotations":[88420],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007785"},{"annotations":[87832],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0026731"},{"annotations":[87605,87604],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010134"},{"annotations":[89247,87769,89248],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008566"}]},"cv_name":"mondo","definition":"A disease involving the thyroid gland.","direct_ancestors":[{"relation_name":"is_a","term_name":"endocrine system disorder","termid":"MONDO:0005151"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01926":null,"SJAG_01941":null,"SJAG_01970":null,"SJAG_02463":null,"SJAG_03453":null,"SJAG_03689":null,"SJAG_04067":null,"SJAG_04300":null},"genotype_count":0,"is_obsolete":false,"name":"thyroid gland disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:D013959","SCTID:14304000","NCIT:C26893","DOID:50","ICD9:246.8","EFO:1000627","ICD10CM:E00-E07","ICD9:246.9","ICD9:240-246","MEDGEN:1378579","UMLS:C4317107","Wikipedia:Thyroid_disease"],"synonyms":[{"name":"disease of thyroid gland","type":"exact"},{"name":"disease or disorder of thyroid gland","type":"exact"},{"name":"disorder of thyroid gland","type":"exact"},{"name":"thyroid disease","type":"exact"},{"name":"thyroid gland disease","type":"exact"},{"name":"thyroid gland disease or disorder","type":"exact"},{"name":"thyroid gland diseases","type":"exact"},{"name":"thyroid gland disorder","type":"exact"},{"name":"thyroid gland disorders","type":"exact"}],"termid":"MONDO:0003240","terms_by_termid":{"MONDO:0007681":null,"MONDO:0007785":null,"MONDO:0008566":null,"MONDO:0010134":null,"MONDO:0026731":null},"xrefs":{"Monarch":{"xref_id":"0003240"}}}


id: PBO:0027850
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_nuclease_activity","termid":"PBO:0027850"}


id: PBO:0041707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calmodulin 2 pseudogene 2","termid":"PBO:0041707"}


id: GO:0052815
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a medium-chain fatty acyl-CoA + H2O = a medium-chain fatty acid + CoA + H+. A medium-chain fatty acid has an aliphatic tail containing 6 to 12 carbons.","definition_xrefs":["RHEA:68184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acyl-CoA hydrolase activity","termid":"GO:0047617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0016788","GO:0003674"],"is_obsolete":false,"name":"medium-chain fatty acyl-CoA hydrolase activity","secondary_identifiers":["MetaCyc:3.1.2.19-RXN"],"synonyms":[{"name":"medium-chain acyl coenzyme A hydrolase activity","type":"related"},{"name":"medium-chain acyl-thioester hydrolase activity","type":"related"},{"name":"medium-chain hydrolase activity","type":"related"},{"name":"medium-chain-acyl-CoA hydrolase activity","type":"related"}],"termid":"GO:0052815"}


id: MONDO:0013903
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nystagmus","termid":"MONDO:0005712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"nystagmus 7, congenital, autosomal dominant","secondary_identifiers":["MEDGEN:766715","UMLS:C3553801","DOID:0111791","OMIM:614826"],"synonyms":[{"name":"NYS7","type":"exact"},{"name":"NYSTAGMUS 7, congenital, autosomal dominant","type":"related"}],"termid":"MONDO:0013903","xrefs":{"Monarch":{"xref_id":"0013903"}}}


id: PBO:0029363
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_histone_H3-K9_methylation","termid":"PBO:0029363"}


id: GO:0140631
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of aldehyde dehydrogenase (NAD+).","definition_xrefs":["PMID:33495566"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme inhibitor activity","termid":"GO:0004857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"}],"interesting_parent_ids":["GO:0030234","GO:0140678","GO:0098772","GO:0004857","GO:0003674"],"is_obsolete":false,"name":"aldehyde dehydrogenase (NAD+) inhibitor activity","termid":"GO:0140631"}


id: FYPO:0000233
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form cytoplasmic microtubules that are longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long microtubules","termid":"FYPO:0000055"},{"relation_name":"is_a","term_name":"abnormal cytoplasmic microtubules","termid":"FYPO:0004088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002399","FYPO:0000002","FYPO:0000054","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"long cytoplasmic microtubules","synonyms":[{"name":"elongated cytoplasmic microtubules","type":"exact"},{"name":"long cytoplasmic microtubules during mitotic cell cycle","type":"related"},{"name":"long cytoplasmic microtubules during vegetative growth","type":"exact"},{"name":"microtubule organization defect, long cytoplasmic microtubules","type":"exact"},{"name":"microtubule organization defects, long cytoplasmic microtubules","type":"exact"}],"termid":"FYPO:0000233"}


id: PBO:0003639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P-TEFb-associated cyclin-dependent protein kinase Cdk9","termid":"PBO:0003639"}


id: PBO:0017042
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PantoThenate Kinase","termid":"PBO:0017042"}


id: MONDO:0014537
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any nephronophthisis in which the cause of the disease is a mutation in the DCDC2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephronophthisis","termid":"MONDO:0019005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005240"],"is_obsolete":false,"name":"nephronophthisis 19","secondary_identifiers":["MEDGEN:863979","OMIM:616217","GARD:18081","DOID:0111126","UMLS:C4015542"],"synonyms":[{"name":"DCDC2 nephronophthisis (disease)","type":"exact"},{"name":"NPHP19","type":"exact"},{"name":"nephronophthisis (disease) caused by mutation in DCDC2","type":"exact"},{"name":"nephronophthisis 19","type":"exact"},{"name":"nephronophthisis type 19","type":"exact"}],"termid":"MONDO:0014537","xrefs":{"Monarch":{"xref_id":"0014537"}}}


id: PBO:0085119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleolar protein; constituent of 66S pre-ribosomal particles; depletion leads to defects in rRNA processing and a block in the assembly of large ribosomal subunits; possesses a sigma(70)-like RNA-binding motif","termid":"PBO:0085119"}


id: PBO:0055389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2819","termid":"PBO:0055389"}


id: PBO:0066520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"repulsive guidance molecule BMP co-receptor a","termid":"PBO:0066520"}


id: MONDO:0968981
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive nonsyndromic hearing loss 124","secondary_identifiers":["MEDGEN:1861039","UMLS:C5935612","OMIM:620794"],"synonyms":[{"name":"deafness, autosomal recessive 124","type":"narrow"}],"termid":"MONDO:0968981","xrefs":{"Monarch":{"xref_id":"0968981"}}}


id: GO:0098965
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the extracellular matrix that lies within the synaptic cleft.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specialized extracellular matrix","termid":"GO:0140047"},{"relation_name":"part_of","term_name":"synapse-associated extracellular matrix","termid":"GO:0099535"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"extracellular matrix of synaptic cleft","synonyms":[{"name":"ECM of synaptic cleft","type":"exact"},{"name":"synaptic cleft ECM","type":"exact"}],"termid":"GO:0098965"}


id: PBO:0031140
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actomyosin_contractile_ring_actin_filament_organization","termid":"PBO:0031140"}


id: PBO:0055949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LRRC57 pseudogene 1","termid":"PBO:0055949"}


id: PBO:0061137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NME2 pseudogene 1","termid":"PBO:0061137"}


id: PBO:0041724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium/calmodulin dependent protein kinase IG","termid":"PBO:0041724"}


id: PBO:0046520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"erythroblast membrane associated protein (Scianna blood group)","termid":"PBO:0046520"}


id: GO:0140563
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalyzes the reaction: UDP-alpha-D-xylose + [protein with EGF-like domain]-3-O-(beta-D-glucosyl)-L-serine = UDP + [protein with EGF-like domain]-3-O-(alpha-D-xylosyl-(1->3)-beta-D-glucosyl)-L-serine.","definition_xrefs":["RHEA:56064","EC:2.4.2.42","PMID:30127001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-xylosyltransferase activity","termid":"GO:0035252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase activity","termid":"GO:0140563"}


id: GO:0140747
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription of a non-protein coding gene from a DNA-template.","definition_xrefs":["GOC:pg"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of ncRNA transcription (obsolete GO:0140747)","termid":"GO:0140747"}


id: PBO:0034776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanyl-nucleotide exchange factor Vps902","termid":"PBO:0034776"}


id: MONDO:0043762
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An abnormal pregnancy in which the conception is implanted in the fallopian tube.","definition_xrefs":["NCIT:C92946"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ectopic pregnancy","termid":"MONDO:0000755"},{"relation_name":"is_a","term_name":"fallopian tube disorder","termid":"MONDO:0002156"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubal pregnancy","secondary_identifiers":["icd11.foundation:913821868","MEDGEN:10901","MESH:D011274","SCTID:79586000","UMLS:C0032994"],"synonyms":[{"name":"Pregnancies, tubal","type":"related"},{"name":"ectopic pregnancy of fallopian tube","type":"exact"},{"name":"fallopian pregnancy","type":"related"},{"name":"fallopian tube ectopic pregnancy","type":"exact"},{"name":"fallopian tube pregnancy","type":"related"},{"name":"tubal Pregnancies","type":"related"},{"name":"tubal pregnancy","type":"exact"}],"termid":"MONDO:0043762","xrefs":{"Monarch":{"xref_id":"0043762"}}}


id: MONDO:0019613
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hormone producing or non-producing pituitary gland adenoma not associated with a hormonal syndrome.","definition_xrefs":["NCIT:C4348"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-functioning pituitary gland neoplasm","termid":"MONDO:0003603"},{"relation_name":"is_a","term_name":"pituitary gland adenoma","termid":"MONDO:0006373"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-functioning pituitary adenoma","secondary_identifiers":["EFO:0008516","ICD10CM:D35.2","icd11.foundation:1197752358","DOID:5715","GARD:19159","Orphanet:91349","SCTID:254962005"],"synonyms":[{"name":"NFPA","type":"exact"},{"name":"functionless adenoma of pituitary","type":"exact"},{"name":"functionless adenoma of pituitary gland","type":"exact"},{"name":"functionless adenoma of the pituitary","type":"exact"},{"name":"functionless adenoma of the pituitary gland","type":"exact"},{"name":"functionless pituitary adenoma","type":"exact"},{"name":"functionless pituitary gland adenoma","type":"exact"},{"name":"non-functioning adenoma of pituitary","type":"exact"},{"name":"non-functioning adenoma of pituitary gland","type":"exact"},{"name":"non-functioning adenoma of the pituitary","type":"exact"},{"name":"non-functioning adenoma of the pituitary gland","type":"exact"},{"name":"non-functioning pituitary adenoma","type":"exact"},{"name":"non-functioning pituitary gland adenoma","type":"exact"},{"name":"non-secretory adenoma of pituitary","type":"exact"},{"name":"non-secretory adenoma of pituitary gland","type":"exact"},{"name":"non-secretory adenoma of the pituitary","type":"exact"},{"name":"non-secretory adenoma of the pituitary gland","type":"exact"},{"name":"non-secretory pituitary adenoma","type":"exact"},{"name":"non-secretory pituitary gland adenoma","type":"exact"},{"name":"nonfunctional pituitary gland adenoma","type":"exact"},{"name":"silent pituitary gland adenoma","type":"exact"}],"termid":"MONDO:0019613","xrefs":{"Monarch":{"xref_id":"0019613"}}}


id: MONDO:0007018
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the vulva. It is characterized by pruritus and painful urination.","definition_xrefs":["MESH:D014847"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vulvar disease","termid":"MONDO:0002187"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vulvitis","secondary_identifiers":["DOID:3901","MEDGEN:22690","SCTID:63144007","UMLS:C0042996","EFO:1001239","MedDRA:10047780","icd11.foundation:727252860"],"synonyms":[{"name":"inflammation of mammalian vulva","type":"exact"},{"name":"mammalian vulva inflammation","type":"exact"}],"termid":"MONDO:0007018","xrefs":{"Monarch":{"xref_id":"0007018"}}}


id: MONDO:0021948
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"extrapulmonary tuberculosis","termid":"MONDO:0000368"},{"relation_name":"is_a","term_name":"skin disease caused by bacterial infection","termid":"MONDO:0024295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"cutaneous tuberculosis","secondary_identifiers":["SCTID:66986005","MEDGEN:22515","icd11.foundation:625292625","UMLS:C0041309"],"synonyms":[{"name":"Cutaneous Tuberculoses","type":"related"},{"name":"Cutaneous Tuberculosis","type":"related"},{"name":"Cutaneous tuberculosis","type":"related"},{"name":"Skin Tuberculoses","type":"related"},{"name":"Skin Tuberculosis","type":"related"},{"name":"Tuberculoderma","type":"related"},{"name":"Tuberculoses, Cutaneous","type":"related"},{"name":"Tuberculoses, Skin","type":"related"},{"name":"Tuberculosis cutis","type":"related"},{"name":"Tuberculosis of skin","type":"related"},{"name":"Tuberculosis, Cutaneous","type":"related"},{"name":"Tuberculosis, Skin","type":"related"},{"name":"cutaneous tuberculosis","type":"exact"},{"name":"tuberculoderma","type":"related"},{"name":"tuberculosis cutis","type":"related"},{"name":"tuberculosis of skin","type":"exact"}],"termid":"MONDO:0021948","xrefs":{"Monarch":{"xref_id":"0021948"}}}


id: MONDO:0003139
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mesangial proliferative glomerulonephritis (MPGN) is a condition that affects the kidneys. Many experts consider it a variant of minimal change disease, but some experts believe it is a separate condition. It may present with nephrotic syndrome, which is a group of symptoms that include protein in the urine (proteinuria), low blood protein levels, high cholesterol levels, high triglyceride levels, and swelling. It can also present with blood in the urine (hematuria). MPGN is characterized by an increased number of mesangial cells in the glomeruli in the kidneys and damage to the glomeruli. Glomeruli are the structures that help filter wastes and fluids. MPGN may occur in several renal diseases such as IgA nephropathy (commonly), IgM nephropathy, lupus nephritis, and C1q nephropathy.However, in some cases, the underlying cause of MPGN remains unclear. Treatment may depend on the cause (if known) and may include steroids, mycophenolate mofetil, and/or cyclophosphamide, and other therapies to treat specific symptoms. Most people with MPGN have a good prognosis, but some may develop chronic kidney disease, which can progress to end stage renal failure.","direct_ancestors":[{"relation_name":"is_a","term_name":"glomerulonephritis","termid":"MONDO:0002462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"mesangial proliferative glomerulonephritis","secondary_identifiers":["NCIT:C35445","DOID:4783","GARD:9580","SCTID:35546006","NANDO:2200122","UMLS:C0221238","MEDGEN:66364","NANDO:1201029"],"synonyms":[{"name":"Mesangioproliferative glomerulonephritis","type":"related"},{"name":"glomerulonephritis - mesangial proliferative","type":"related"},{"name":"mesangial proliferative GN","type":"related"}],"termid":"MONDO:0003139","xrefs":{"Monarch":{"xref_id":"0003139"}}}


id: GO:0001966
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of an animal in response to touch.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"behavior","termid":"GO:0007610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thigmotaxis","synonyms":[{"name":"stereotaxis","type":"exact"},{"name":"taxis in response to mechanical stimulus","type":"broad"},{"name":"taxis in response to touch stimulus","type":"exact"}],"termid":"GO:0001966"}


id: PATO:0000087
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000087 disease sensitivity (obsolete PATO:0000087)","termid":"PATO:0000087"}


id: MONDO:0009932
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pulmonary bullae causing pneumothorax","secondary_identifiers":["OMIM:265200","MEDGEN:337856","MESH:C564863","UMLS:C1849566"],"synonyms":[{"name":"pulmonary bullae causing pneumothorax","type":"exact"}],"termid":"MONDO:0009932","xrefs":{"Monarch":{"xref_id":"0009932"}}}


id: PBO:0091616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino acid transmembrane transporter Isp5","termid":"PBO:0091616"}


id: PBO:0056301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule associated protein 1 light chain 3 pseudogene","termid":"PBO:0056301"}


id: MONDO:0100182
data:
  {"annotated_genes":["SJAG_01903"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89233],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010943"}]},"cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing schizophrenia.","definition_xrefs":["MONDO:patterns/inherited_susceptibility"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01903":null},"genotype_count":0,"is_obsolete":false,"name":"schizophrenia, susceptibility to","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:390920","UMLS:C2675945"],"termid":"MONDO:0100182","terms_by_termid":{"MONDO:0010943":null},"xrefs":{"Monarch":{"xref_id":"0100182"}}}


id: GO:0006805
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.","definition_xrefs":["GOC:cab2","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"},{"relation_name":"part_of","term_name":"cellular response to xenobiotic stimulus","termid":"GO:0071466"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"xenobiotic metabolic process","secondary_identifiers":["GO:0017144","Reactome:R-HSA-211981","Reactome:R-HSA-9748784","Wikipedia:Xenobiotic_metabolism","Reactome:R-HSA-2161541","Wikipedia:Drug_metabolism","Reactome:R-HSA-211859"],"synonyms":[{"name":"drug metabolic process","type":"related"},{"name":"drug metabolism","type":"related"},{"name":"xenobiotic metabolism","type":"exact"}],"termid":"GO:0006805"}


id: PBO:0084920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Molecular tether on nuclear membrane; mediates contact by interacting with Tom70p on mitochondria; protein abundance is regulated by phosphatidylcholine, enabling coupling of phospholipid homeostasis with contact extent","termid":"PBO:0084920"}


id: FYPO:0003374
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of coenzyme Q10 measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in cell during vegetative growth","termid":"FYPO:0001316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal cellular coenzyme Q10 level","synonyms":[{"name":"normal cellular coenzyme Q10 accumulation","type":"related"},{"name":"normal cellular coenzyme Q10 level during mitotic cell cycle","type":"related"},{"name":"normal cellular coenzyme Q10 level during vegetative growth","type":"exact"}],"termid":"FYPO:0003374"}


id: GO:0046920
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of an L-fucosyl group from GDP-beta-L-fucose to an acceptor molecule to form an alpha-(1->3) linkage.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fucosyltransferase activity","termid":"GO:0008417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016757","GO:0003824"],"is_obsolete":false,"name":"alpha-(1->3)-fucosyltransferase activity","secondary_identifiers":["Reactome:R-HSA-9605682","Reactome:R-HSA-9605644","Reactome:R-HSA-9603984","Reactome:R-HSA-9605609"],"synonyms":[{"name":"alpha(1,3)-fucosyltransferase activity","type":"exact"},{"name":"alpha-(1,3)-fucosyltransferase activity","type":"exact"},{"name":"alpha-1,3-fucosyltransferase activity","type":"exact"}],"termid":"GO:0046920"}


id: PBO:0053957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1264","termid":"PBO:0053957"}


id: PBO:0090402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase Prh1","termid":"PBO:0090402"}


id: MONDO:0007311
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare subtype of CMT1 characterized by a variable clinical presentation. Onset within the first two years of life with a delay in walking is not uncommon; however, onset may occur later. CMT1E is caused by point mutations in the PMP22 (17p12) gene. The disease severity depends on the particular PMP22 mutation, with some cases being very mild and even resembling hereditary neuropathy with liability to pressure palsies, while others having an earlier onset with a more severe phenotype (reminiscent of Dejerine-Sottas syndrome) than that seen in CMT1A, caused by gene duplication. These severe cases may also report deafness and much slower motor nerve conduction velocities compared to CMT1A patients.","definition_xrefs":["Orphanet:90658"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 1","termid":"MONDO:0019011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease type 1E","secondary_identifiers":["GARD:9190","icd11.foundation:1924906594","MEDGEN:501212","MESH:C537986","OMIM:118300","UMLS:C3495591","DOID:0110153"],"synonyms":[{"name":"CMT 1E","type":"related"},{"name":"CMT1E","type":"exact"},{"name":"Charcot Marie Tooth disease type 1E","type":"related"},{"name":"Charcot-Marie-Tooth disease and deafness","type":"exact"},{"name":"Charcot-Marie-Tooth disease demyelinating type 1E","type":"exact"},{"name":"Charcot-Marie-Tooth disease, demyelinating, type 1E","type":"related"},{"name":"Charcot-Marie-Tooth disease, type 1E","type":"exact"},{"name":"Charcot-Marie-Tooth disease-deafness","type":"exact"},{"name":"Charcot-Marie-Tooth disease-deafness syndrome","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy and deafness, autosomal dominant","type":"related"},{"name":"autosomal dominant Charcot-Marie-Tooth neuropathy and deafness","type":"exact"}],"termid":"MONDO:0007311","xrefs":{"Monarch":{"xref_id":"0007311"}}}


id: PBO:0048097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin light chain pseudogene 18","termid":"PBO:0048097"}


id: GO:0005105
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 1 fibroblast growth factor receptor (FGFR1).","definition_xrefs":["GOC:ceb","GOC:fb_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor binding","termid":"GO:0005104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"type 1 fibroblast growth factor receptor binding","synonyms":[{"name":"FGFR1 binding","type":"broad"},{"name":"FGFR1 ligand","type":"narrow"},{"name":"breathless binding","type":"narrow"},{"name":"breathless ligand","type":"narrow"},{"name":"type 1 fibroblast growth factor receptor ligand","type":"narrow"}],"termid":"GO:0005105"}


id: GO:0033803
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + kaempferol = S-adenosyl-L-homocysteine + H+ + kaempferide.","definition_xrefs":["RHEA:15105"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016741","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"kaempferol 4'-O-methyltransferase activity","secondary_identifiers":["MetaCyc:2.1.1.155-RXN","EC:2.1.1.155","KEGG_REACTION:R06807"],"synonyms":[{"name":"F 4'-OMT","type":"related"},{"name":"S-adenosyl-L-methionine:flavonoid 4'-O-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:kaempferol 4'-O-methyltransferase activity","type":"related"}],"termid":"GO:0033803"}


id: PBO:0036068
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mitotic_spindle_collapse_during_anaphase_B","termid":"PBO:0036068"}


id: GO:0005631
data:
  {"annotated_genes":["SJAG_03013"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[93719],"is_not":false,"summary":null,"term":"GO:0005631"}]},"cv_name":"cellular_component","definition":"The second outermost layer of the spore wall, as described in Saccharomyces.","definition_xrefs":["ISBN:0879693568"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"ascospore wall","termid":"GO:0005619"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03013":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005618"}],"interesting_parent_ids":["GO:0005575","GO:0005618"],"is_obsolete":false,"name":"chitosan layer of spore wall","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0005631","terms_by_termid":{"GO:0005631":null}}


id: GO:0106414
data:
  {"annotated_genes":["SJAG_03240","SJAG_03236","SJAG_01041","SJAG_00174"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91405,106653,111614,120441],"is_not":false,"summary":null,"term":"GO:0106414"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: mRNA-uracil + NAD(P)+ = mRNA-dihydrouridine + NAD(P)H+ + H+.","definition_xrefs":["PMID:34798057"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA dihydrouridine synthase activity","termid":"GO:0106413"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00174":null,"SJAG_01041":null,"SJAG_03236":null,"SJAG_03240":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"mRNA dihydrouridine synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106414","terms_by_termid":{"GO:0106414":null}}


id: GO:0099003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any vesicle-mediated transport that occurs in a synapse.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle-mediated transport","termid":"GO:0016192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0016192","GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"vesicle-mediated transport in synapse","termid":"GO:0099003"}


id: GO:0018658
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: salicylate + NADH + H+ + O2 = catechol + NAD+ + H2O + CO2.","definition_xrefs":["EC:1.14.13.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"salicylate 1-monooxygenase activity","secondary_identifiers":["MetaCyc:SALICYLATE-1-MONOOXYGENASE-RXN","RHEA:11004","UM-BBD_enzymeID:r0340"],"synonyms":[{"name":"salicylate 1-hydroxylase activity","type":"related"},{"name":"salicylate hydroxylase (decarboxylating)","type":"related"},{"name":"salicylate hydroxylase activity","type":"exact"},{"name":"salicylate monooxygenase activity","type":"related"},{"name":"salicylate,NADH:oxygen oxidoreductase (1-hydroxylating, decarboxylating)","type":"related"},{"name":"salicylic hydroxylase activity","type":"related"}],"termid":"GO:0018658"}


id: MONDO:0019387
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Macrostomia-preauricular tags-external ophthalmoplegia syndrome combines macrostomia or abnormal mouth contour, preauricular tags, uni- or bilateral ptosis and external ophthalmoplegia. It was described in nine members of a Brazilian family. It is a new phenotype belonging to the so-called oculoauriculovertebral spectrum, resulting from a branchial arch anomaly. Transmission is autosomal dominant.","definition_xrefs":["Orphanet:83619"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"macrostomia-preauricular tags-external ophthalmoplegia syndrome","secondary_identifiers":["UMLS:C4509840","GARD:19044","MEDGEN:1391725"],"termid":"MONDO:0019387","xrefs":{"Monarch":{"xref_id":"0019387"}}}


id: GO:0060459
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of a left lung from an initial condition to its mature state. This process begins with the formation of the left lung and ends with the mature structure. The left lung is the lung which is on the left side of the anterior posterior axis looking from a dorsal to ventral aspect.","definition_xrefs":["GOC:mtg_lung","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lung development","termid":"GO:0030324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"left lung development","synonyms":[{"name":"left pulmonary development","type":"exact"}],"termid":"GO:0060459"}


id: PBO:0071950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S5","termid":"PBO:0071950"}


id: PBO:0053694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 892","termid":"PBO:0053694"}


id: SO:0001105
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Residues which interact with a ligand.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligand_binding_site","termid":"SO:0001657"},{"relation_name":"is_a","term_name":"molecular_contact_region","termid":"SO:0100002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_ligand_contact","secondary_identifiers":["BS:00157"],"synonyms":[{"name":"polypeptide ligand contact","type":"exact"},{"name":"protein-ligand interaction","type":"related"}],"termid":"SO:0001105"}


id: PBO:0012014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3, coatamer related complex subunit Sea3 (predicted)","termid":"PBO:0012014"}


id: PBO:0072454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 18","termid":"PBO:0072454"}


id: PBO:0004986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epimarase (predicted)","termid":"PBO:0004986"}


id: PBO:0088231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphofructo-2-kinase","termid":"PBO:0088231"}


id: PBO:0055522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2956","termid":"PBO:0055522"}


id: GO:0061571
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of introducing a phosphate group into TDP to produce a TTP.","definition_xrefs":["PMID:23416111","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete TDP phosphorylation (obsolete GO:0061571)","termid":"GO:0061571"}


id: PBO:0005600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxylesterase-lipase family protein","termid":"PBO:0005600"}


id: MONDO:0012189
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Amish infantile epilepsy syndrome (obsolete MONDO:0012189)","termid":"MONDO:0012189","xrefs":{"Monarch":{"xref_id":"0012189"}}}


id: PBO:0090756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF3074 family protein, implicated in vesicle trafficking or lipid metabolism","termid":"PBO:0090756"}


id: GO:0034480
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1,2-diacyl-sn-glycerol + H+ + phosphocholine.","definition_xrefs":["RHEA:10604","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipase C activity","termid":"GO:0004629"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016788","GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"phosphatidylcholine phospholipase C activity","secondary_identifiers":["EC:3.1.4.3","MetaCyc:PHOSPHOLIPASE-C-RXN","Reactome:R-HSA-9680388"],"synonyms":[{"name":"Clostridium oedematiens beta- and gamma-toxins activity","type":"narrow"},{"name":"Clostridium welchii alpha-toxin activity","type":"narrow"},{"name":"heat-labile hemolysin","type":"narrow"},{"name":"lipophosphodiesterase I activity","type":"related"},{"name":"phosphatidylcholine cholinephosphohydrolase activity","type":"related"},{"name":"phospholipase C, acting on phosphatidylcholine","type":"exact"}],"termid":"GO:0034480"}


id: GO:0002581
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of antigen processing and presentation of antigen (peptide or polysaccharide) via MHC class II.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of antigen processing and presentation","termid":"GO:0002578"},{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","termid":"GO:0002580"},{"relation_name":"negatively_regulates","term_name":"antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","termid":"GO:0002504"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","synonyms":[{"name":"down regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","type":"exact"},{"name":"down-regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","type":"exact"},{"name":"downregulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","type":"exact"},{"name":"inhibition of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","type":"narrow"},{"name":"negative regulation of peptide or polysaccharide antigen processing and presentation via MHC class II","type":"exact"}],"termid":"GO:0002581"}


id: GO:0140786
data:
  {"annotated_genes":["SJAG_03405"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114857],"is_not":false,"summary":null,"term":"GO:0140786"}]},"cv_name":"molecular_function","definition":"Binding to and responding, e.g. by conformational change, to changes in the cellular level of glutamine.","definition_xrefs":["PMID:34535752"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid sensor activity","termid":"GO:0140785"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03405":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140299"}],"interesting_parent_ids":["GO:0003674","GO:0098772","GO:0140299"],"is_obsolete":false,"name":"glutamine sensor activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"glutamine sensing activity","type":"exact"}],"termid":"GO:0140786","terms_by_termid":{"GO:0140786":null}}


id: PBO:0051961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol 1,4,5-trisphosphate receptor interacting protein","termid":"PBO:0051961"}


id: FYPO:0000442
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing glycerol and ethanol as the carbon sources.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0005447","FYPO:0002058","FYPO:0000003","FYPO:0001985","FYPO:0002057","FYPO:0000139"],"is_obsolete":false,"name":"decreased cell population growth on glycerol/ethanol carbon source","synonyms":[{"name":"decreased cell growth on glycerol plus ethanol","type":"exact"},{"name":"decreased growth on glycerol/ethanol carbon source","type":"broad"},{"name":"decreased vegetative cell growth on glycerol/ethanol carbon source","type":"exact"},{"name":"reduced cell growth on glycerol/ethanol carbon source","type":"related"},{"name":"slow cell growth on glycerol/ethanol carbon source","type":"narrow"}],"termid":"FYPO:0000442"}


id: MONDO:0008175
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pacman dysplasia is characterized by epiphyseal stippling and osteoclastic overactivity. It has been described in less than 10 patients but may be underdiagnosed. It is characterized radiographically by severe stippling of the lower spine and long bones, and periosteal cloaking. Patients also have short metacarpals. The syndrome may be inherited as an autosomal recessive trait. This disorder should be included in the differential diagnosis of mucolipidosis type II. In order to make a definitive diagnosis, lysosomal storage should be investigated by electron microscopy, or enzyme assays should be performed. Familial recurrence can be easily detected by prenatal ultrasonography. This skeletal dysplasia is lethal.","definition_xrefs":["Orphanet:1952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary osteolysis","termid":"MONDO:0019707"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pacman dysplasia","secondary_identifiers":["UMLS:C1833676","MESH:C538095","OMIM:167220","SCTID:722127006","GARD:4189","icd11.foundation:519938437","MEDGEN:331566"],"synonyms":[{"name":"Pacman syndrome","type":"related"},{"name":"epiphyseal stippling syndrome-osteoclastic hyperplasia syndrome","type":"exact"},{"name":"epiphyseal stippling with osteoclastic hyperplasia","type":"related"},{"name":"pacman dysplasia","type":"exact"}],"termid":"MONDO:0008175","xrefs":{"Monarch":{"xref_id":"0008175"}}}


id: GO:0099609
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to the side of a microtubule.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule binding","termid":"GO:0008017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0008017"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0008017","GO:0008092","GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"microtubule lateral binding","termid":"GO:0099609"}


id: GO:0032757
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-8 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-8 production","termid":"GO:0032677"},{"relation_name":"positively_regulates","term_name":"interleukin-8 production","termid":"GO:0032637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of interleukin-8 production","secondary_identifiers":["GO:2000484","GO:0045416"],"synonyms":[{"name":"activation of interleukin-8 production","type":"narrow"},{"name":"positive regulation of IL-8 production","type":"exact"},{"name":"positive regulation of interleukin-8 biosynthetic process","type":"narrow"},{"name":"positive regulation of interleukin-8 secretion","type":"narrow"},{"name":"stimulation of interleukin-8 production","type":"narrow"},{"name":"up regulation of interleukin-8 production","type":"exact"},{"name":"up-regulation of interleukin-8 production","type":"exact"},{"name":"upregulation of interleukin-8 production","type":"exact"}],"termid":"GO:0032757"}


id: PBO:0027992
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_phosphorylation_during_mitotic_G2_phase","termid":"PBO:0027992"}


id: PBO:0012237
data:
  {"annotation_feature_type":"gene","cv_name":"subunit_composition","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterododecameric","termid":"PBO:0012237"}


id: GO:0031043
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The stepwise addition of carbohydrate or carbohydrate derivative residues to the initially added O-linked residue (usually GalNAc) to form the core 7 O-glycan structure, GalNAc-alpha-(1->6)-GalNAc.","definition_xrefs":["GOC:pr","PMID:10580130","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete O-glycan processing, core 7 (obsolete GO:0031043)","termid":"GO:0031043"}


id: MONDO:0017165
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Bile acid CoA ligase deficiency and defective amidation is an anomaly of bile acid synthesis characterized by fat malabsorption, neonatal cholestasis and growth failure.","definition_xrefs":["Orphanet:276066"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of bile acid synthesis","termid":"MONDO:0019218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002525"],"is_obsolete":false,"name":"bile acid CoA ligase deficiency and defective amidation","secondary_identifiers":["MEDGEN:905864","UMLS:C4274079","GARD:21041","SCTID:717047007"],"termid":"MONDO:0017165","xrefs":{"Monarch":{"xref_id":"0017165"}}}


id: GO:1904871
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein localization to Cajal body.","definition_xrefs":["GO_REF:0000058","GOC:nc","GOC:BHF_telomere","GOC:TermGenie","GOC:BHF","PMID:25467444"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein localization to nucleus","termid":"GO:1900182"},{"relation_name":"is_a","term_name":"regulation of protein localization to Cajal body","termid":"GO:1904869"},{"relation_name":"positively_regulates","term_name":"protein localization to Cajal body","termid":"GO:1904867"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein localization to Cajal body","synonyms":[{"name":"activation of protein localisation in Cajal body","type":"narrow"},{"name":"activation of protein localisation to Cajal body","type":"narrow"},{"name":"activation of protein localization in Cajal body","type":"narrow"},{"name":"activation of protein localization to Cajal body","type":"narrow"},{"name":"positive regulation of protein localisation in Cajal body","type":"exact"},{"name":"positive regulation of protein localisation to Cajal body","type":"exact"},{"name":"positive regulation of protein localization in Cajal body","type":"exact"},{"name":"up regulation of protein localisation in Cajal body","type":"exact"},{"name":"up regulation of protein localisation to Cajal body","type":"exact"},{"name":"up regulation of protein localization in Cajal body","type":"exact"},{"name":"up regulation of protein localization to Cajal body","type":"exact"},{"name":"up-regulation of protein localisation in Cajal body","type":"exact"},{"name":"up-regulation of protein localisation to Cajal body","type":"exact"},{"name":"up-regulation of protein localization in Cajal body","type":"exact"},{"name":"up-regulation of protein localization to Cajal body","type":"exact"},{"name":"upregulation of protein localisation in Cajal body","type":"exact"},{"name":"upregulation of protein localisation to Cajal body","type":"exact"},{"name":"upregulation of protein localization in Cajal body","type":"exact"},{"name":"upregulation of protein localization to Cajal body","type":"exact"}],"termid":"GO:1904871"}


id: PATO:0001385
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A ploidy quality inhering in a bearer by virtue of the bearer's containing a non-integral multiple of the monoploid number, due to extra or missing chromosomes.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Aneuploid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ploidy","termid":"PATO:0001374"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aneuploid","termid":"PATO:0001385"}


id: PBO:0059924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 10","termid":"PBO:0059924"}


id: GO:0003061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the secretion of norepinephrine into the bloodstream or released from nerve endings modulates the force of heart musclecontraction.","definition_xrefs":["GOC:rl","GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of the force of heart contraction by chemical signal","termid":"GO:0003099"},{"relation_name":"part_of","term_name":"positive regulation of the force of heart contraction by epinephrine-norepinephrine","termid":"GO:0001997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of the force of heart contraction by norepinephrine","synonyms":[{"name":"increased force of heart contraction by adrenaline","type":"related"},{"name":"increased force of heart contraction by norepinephrine","type":"exact"},{"name":"noradrenaline cardiac inotropy","type":"exact"},{"name":"noradrenaline regulation of the strength of heart muscle contraction","type":"exact"},{"name":"norepinephrine cardiac inotropy","type":"exact"},{"name":"positive regulation of heart contraction by adrenaline","type":"related"},{"name":"positive regulation of heart contraction by norepinephrine","type":"related"}],"termid":"GO:0003061"}


id: MONDO:0971032
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acquired metabolic disease that is characterized by ethanol fermentation in the bladder and the absence of alcoholic intoxication.","definition_xrefs":["DOID:0081456"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acquired metabolic disease","termid":"MONDO:0006504"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"bladder fermentation syndrome","termid":"MONDO:0971032","xrefs":{"Monarch":{"xref_id":"0971032"}}}


id: GO:0043783
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of an oxidation-reduction in which the metal ion is reduced and flavin acts as an electron acceptor.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidoreductase activity, acting on metal ions, flavin as acceptor (obsolete GO:0043783)","synonyms":[{"name":"oxidoreductase activity, oxidizing metal ions with flavin as acceptor","type":"related"},{"name":"oxidoreductase activity, reducing metal ions, flavin as acceptor","type":"related"}],"termid":"GO:0043783"}


id: PR:O13948
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC23H4.05c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C23H4.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H4.05c","synonyms":[{"name":"Spom972h-SPAC23H4.05c","type":"exact"}],"termid":"PR:O13948"}


id: MONDO:0009331
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Isolated hemihyperplasia is a rare overgrowth syndrome characterized by an asymmetric regional body overgrowth, involving at least one limb, and associated with an increased risk of developing embryonal tumors, principally nephroblastoma and hepoblastoma.","definition_xrefs":["Orphanet:2128"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"macroglossia","termid":"MONDO:0015496"},{"relation_name":"is_a","term_name":"overgrowth syndrome","termid":"MONDO:0019716"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isolated hemihyperplasia","secondary_identifiers":["UMLS:C1856184","MedDRA:10019463","MEDGEN:383853","GARD:2630","MESH:C565524","OMIM:235000"],"synonyms":[{"name":"Hemicorporal hypertrophy","type":"exact"},{"name":"IH","type":"related"},{"name":"hemi 3 syndrome","type":"exact"},{"name":"hemi-3 syndrome","type":"related"},{"name":"hemihyperplasia","type":"related"},{"name":"hemihyperplasia, isolated","type":"related"},{"name":"hemihypertrophy","type":"exact"},{"name":"hemihypertrophy, isolated","type":"related"},{"name":"isolated hemihypertrophy","type":"exact"}],"termid":"MONDO:0009331","xrefs":{"Monarch":{"xref_id":"0009331"}}}


id: MONDO:0005684
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of paralytic poliomyelitis affecting neurons of the medulla oblongata of the brain stem. Clinical features include impaired respiration, hypertension, alterations of vasomotor control, and dysphagia. Weakness and atrophy of the limbs and trunk due to spinal cord involvement is usually associated. (From Adams et al., Principles of Neurology, 6th ed, p765)","definition_xrefs":["MESH:D011052"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paralytic poliomyelitis","termid":"MONDO:0000341"},{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"bulbar polio","secondary_identifiers":["UMLS:C0032372","ICD9:045.0","DOID:9786","MEDGEN:45982"],"synonyms":[{"name":"bulbar polio","type":"exact"},{"name":"bulbar poliomyelitis","type":"exact"},{"name":"medullary involvement poliomyelitis","type":"related"},{"name":"polio, bulbar","type":"related"},{"name":"poliomyelitis, medullary involvement","type":"related"}],"termid":"MONDO:0005684","xrefs":{"Monarch":{"xref_id":"0005684"}}}


id: MONDO:0010674
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lysosomal storage disease leading to a massive accumulation of glycosaminoglycans and a wide variety of symptoms including distinctive coarse facial features, short stature, cardio-respiratory involvement and skeletal abnormalities. It manifests as a continuum varying from a severe to an attenuated form without neuronal involvement.","definition_xrefs":["Orphanet:580"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete syndromic neurometabolic disease with X-linked intellectual disability (obsolete MONDO:0015920)","termid":"MONDO:0015920"},{"relation_name":"excluded_subClassOf","term_name":"obsolete lysosomal disease with hypertrophic cardiomyopathy (obsolete MONDO:0016326)","termid":"MONDO:0016326"},{"relation_name":"excluded_subClassOf","term_name":"obsolete metabolic disease with skin involvement (obsolete MONDO:0019301)","termid":"MONDO:0019301"},{"relation_name":"excluded_subClassOf","term_name":"obsolete lysosomal storage disease with skeletal involvement (obsolete MONDO:0019706)","termid":"MONDO:0019706"},{"relation_name":"excluded_subClassOf","term_name":"obsolete eyelids malposition disorder (obsolete MONDO:0020158)","termid":"MONDO:0020158"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"mucopolysaccharidosis","termid":"MONDO:0019249"},{"relation_name":"is_a","term_name":"lysosomal storage disease with skeletal involvement","termid":"MONDO:0800088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002561","MONDO:0037792"],"is_obsolete":false,"name":"mucopolysaccharidosis type 2","secondary_identifiers":["icd11.foundation:1056274204","MedDRA:10056889","NANDO:2200548","NCIT:C61260","SCTID:70737009","MESH:D016532","UMLS:C0026705","NORD:1255","OMIM:309900","Orphanet:79388","DOID:12799","MEDGEN:7734","ICD10CM:E76.1","NANDO:1200097","GARD:6675"],"synonyms":[{"name":"Hunter syndrome","type":"exact"},{"name":"Hunter's syndrome","type":"exact"},{"name":"I2S deficiency","type":"exact"},{"name":"IDS deficiency","type":"exact"},{"name":"MPS 2","type":"exact"},{"name":"MPS II","type":"exact"},{"name":"MPS II - Hunter syndrome","type":"exact"},{"name":"MPS with skin involvement","type":"exact"},{"name":"MPS2","type":"exact"},{"name":"MPSII","type":"exact"},{"name":"Mucopolysaccharidosis Type II","type":"exact"},{"name":"SIDS deficiency","type":"exact"},{"name":"attenuated MPS (subtype; formerly known as mild MPS II)","type":"exact"},{"name":"deficiency of iduronate-2-sulphatase","type":"exact"},{"name":"iduronate 2-sulfatase deficiency","type":"exact"},{"name":"mucopolysaccharidosis II","type":"exact"},{"name":"mucopolysaccharidosis II, X-linked recessive","type":"exact"},{"name":"mucopolysaccharidosis type 2","type":"exact"},{"name":"mucopolysaccharidosis type II","type":"exact"},{"name":"mucopolysaccharidosis with skin involvement","type":"exact"},{"name":"mucopolysaccharidosis, MPS-II","type":"exact"},{"name":"mucopolysaccharidosis, type 2","type":"exact"},{"name":"mucopolysaccharidosis, type II","type":"exact"},{"name":"severe MPS II","type":"exact"},{"name":"sulfoiduronate sulfatase deficiency","type":"exact"}],"termid":"MONDO:0010674","xrefs":{"Monarch":{"xref_id":"0010674"}}}


id: GO:0033927
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->4)-alpha-D-glucosidic linkages in amylaceous polysaccharides, to remove successive maltohexaose residues from the non-reducing chain ends.","definition_xrefs":["EC:3.2.1.98"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016798","GO:0003674"],"is_obsolete":false,"name":"glucan 1,4-alpha-maltohexaosidase activity","secondary_identifiers":["MetaCyc:3.2.1.98-RXN"],"synonyms":[{"name":"1,4-alpha-D-glucan maltohexaohydrolase activity","type":"related"},{"name":"G6-amylase activity","type":"related"},{"name":"exo-maltohexaohydrolase activity","type":"related"},{"name":"maltohexaose-producing amylase activity","type":"related"}],"termid":"GO:0033927"}


id: FYPO:0005677
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of sites at which the protein Rad52 (also called Rad22) accumulates is lower than normal during S phase of the mitotic cell cycle.","definition_xrefs":["PMID:27151298","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased number of Rad52 foci during vegetative growth","termid":"FYPO:0004516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased number of Rad52 foci during mitotic S phase","synonyms":[{"name":"decreased number of Rad22 foci during mitotic S phase","type":"exact"},{"name":"decreased number of Rad52 foci during S phase of mitotic cell cycle","type":"exact"},{"name":"decreased number of Rad52 foci during mitotic S phase during vegetative growth","type":"exact"},{"name":"reduced number of Rad52 foci during mitotic S phase","type":"exact"}],"termid":"FYPO:0005677"}


id: MOD:01408
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-cysteine residue and an L-threonine residue to form L-threonine thiazoline-4-carboxylic acid.","definition_xrefs":["PubMed:11320328","RESID:AA0485"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiazole/thiazoline ring crosslinked residues","termid":"MOD:01420"},{"relation_name":"is_a","term_name":"crosslinked L-threonine residue","termid":"MOD:02056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"L-threonine thiazoline-4-carboxylic acid","synonyms":[{"name":"(4S)-2-[(1S,2R)-1-amino-2-hydroxypropyl]-4,5-dihydro-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"2-[1-azanyl-2-hydroxypropyl]-4,5-dihydro-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"CROSSLNK (4S)-thiazoline-4-carboxylic acid (Thr-Cys)","type":"exact"},{"name":"L-threonine (4S)-thiazoline-4-carboxylic acid","type":"exact"}],"termid":"MOD:01408"}


id: FYPO:0003087
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) in a mutant is normal (i.e. indistinguishable from wild type) at a replication fork barrier in the mating-type region.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal chromatin binding","termid":"FYPO:0003086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000652"],"is_obsolete":false,"name":"normal chromatin binding at mating-type region replication fork barrier","termid":"FYPO:0003087"}


id: PBO:0051184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-75 (pseudogene)","termid":"PBO:0051184"}


id: GO:0036037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in morphology and behavior of a CD8-positive, alpha-beta T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific.","definition_xrefs":["CL:0000625","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-beta T cell activation","termid":"GO:0046631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD8-positive, alpha-beta T cell activation","termid":"GO:0036037"}


id: GO:0048838
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the dormant state is broken in a seed. Dormancy is characterized by a suspension of physiological activity that can be reactivated upon release.","definition_xrefs":["GOC:jid","GOC:tb","ISBN:9781405139830","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"seed dormancy process","termid":"GO:0010162"},{"relation_name":"is_a","term_name":"exit from dormancy","termid":"GO:0097438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"release of seed from dormancy","termid":"GO:0048838"}


id: GO:0000349
data:
  {"annotated_genes":["SJAG_01504","SJAG_00859","SJAG_01315"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[58640,79851,107739],"is_not":false,"summary":null,"term":"GO:0000349"}]},"cv_name":"biological_process","definition":"Formation of a catalytic spliceosome complex ready to perform the first splicing reaction. This occurs by an ATP-dependent conformational change of the pre-catalytic spliceosome.","definition_xrefs":["GOC:krc","ISBN:0879695897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-RNA complex assembly","termid":"GO:0022618"},{"relation_name":"part_of","term_name":"spliceosomal conformational changes to generate catalytic conformation","termid":"GO:0000393"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00859":null,"SJAG_01315":null,"SJAG_01504":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0010467","GO:0016071","GO:0008150"],"is_obsolete":false,"name":"generation of catalytic spliceosome for first transesterification step","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0000357","GO:0000356"],"synonyms":[{"name":"U12-type catalytic spliceosome formation for first transesterification step","type":"narrow"},{"name":"U2-type catalytic spliceosome formation for first transesterification step","type":"narrow"},{"name":"catalytic spliceosome assembly for first transesterification step","type":"related"},{"name":"formation of catalytic spliceosome for first transesterification step","type":"exact"},{"name":"spliceosomal A2-2 complex biosynthesis","type":"narrow"},{"name":"spliceosomal A2-2 complex formation","type":"narrow"},{"name":"spliceosomal C1 complex biosynthesis","type":"narrow"},{"name":"spliceosomal C1 complex formation","type":"narrow"}],"termid":"GO:0000349","terms_by_termid":{"GO:0000349":null}}


id: GO:0006110
data:
  {"annotated_genes":["SJAG_05314","SJAG_00685","SJAG_02785"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71907],"is_not":false,"summary":null,"term":"GO:0006110"},{"annotations":[74975,78030],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045820"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of glycolysis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of purine nucleotide catabolic process","termid":"GO:0033121"},{"relation_name":"is_a","term_name":"regulation of generation of precursor metabolites and energy","termid":"GO:0043467"},{"relation_name":"is_a","term_name":"regulation of carbohydrate catabolic process","termid":"GO:0043470"},{"relation_name":"is_a","term_name":"regulation of ATP metabolic process","termid":"GO:1903578"},{"relation_name":"regulates","term_name":"glycolytic process","termid":"GO:0006096"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00685":null,"SJAG_02785":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006091","GO:0044281","GO:0005975","GO:0055086"],"is_obsolete":false,"name":"regulation of glycolytic process","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["GO:0090525","Reactome:R-HSA-170822"],"synonyms":[{"name":"regulation of glycolysis involved in cellular glucose homeostasis","type":"exact"}],"termid":"GO:0006110","terms_by_termid":{"GO:0006110":null,"GO:0045820":null}}


id: PBO:0039547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 44","termid":"PBO:0039547"}


id: PBO:0117009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ITPR2 antisense RNA 2","termid":"PBO:0117009"}


id: GO:0051816
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The production of structures and/or molecules in an organism that are required for the acquisition and/or utilization of nutrients obtained from a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:cc"],"gene_count":0,"genotype_count":0,"name":"obsolete acquisition of nutrients from other organism during symbiotic interaction (obsolete GO:0051816)","termid":"GO:0051816"}


id: PBO:0076484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TARBP2 pseudogene 1","termid":"PBO:0076484"}


id: PBO:0054883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2297","termid":"PBO:0054883"}


id: PBO:0081524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 433","termid":"PBO:0081524"}


id: MONDO:0100034
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cerebral folate deficiency is defined as a neurological syndrome associated with low CSF 5-methyltetrahydrofolate (5MTHF), the active folate metabolite, in the presence of normal folate metabolism outside the nervous system. Cerebral folate deficiency can result from either disturbed folate transport or from increased folate turnover within the central nervous system.","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"metabolic epilepsy","termid":"MONDO:0100033"},{"relation_name":"is_a","term_name":"inborn vitamin metabolic disorder","termid":"MONDO:0005528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"cerebral folate deficiency","secondary_identifiers":["MEDGEN:893131","icd11.foundation:1137222547","UMLS:C4022901"],"termid":"MONDO:0100034","xrefs":{"Monarch":{"xref_id":"0100034"}}}


id: MONDO:0006453
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. An aggressive, small cell, poorly differentiated thymic neuroendocrine carcinoma, characterized by the presence of a high mitotic rate and numerous apoptotic bodies.","definition_xrefs":["NCIT:C6460"],"gene_count":0,"genotype_count":0,"name":"obsolete thymic small cell carcinoma (obsolete MONDO:0006453)","termid":"MONDO:0006453","xrefs":{"Monarch":{"xref_id":"0006453"}}}


id: PBO:0071046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 48","termid":"PBO:0071046"}


id: GO:0070297
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of signal transduction via a phosphorelay signal transduction system.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular signal transduction","termid":"GO:1902531"},{"relation_name":"regulates","term_name":"phosphorelay signal transduction system","termid":"GO:0000160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of phosphorelay signal transduction system","synonyms":[{"name":"regulation of histidyl-aspartyl phosphorelay","type":"exact"},{"name":"regulation of two-component signal transduction system","type":"exact"},{"name":"regulation of two-component signal transduction system (phosphorelay)","type":"narrow"}],"termid":"GO:0070297"}


id: FYPO:0001086
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a glucosyltransferase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000257"],"is_obsolete":false,"name":"normal glucosyltransferase activity","termid":"FYPO:0001086"}


id: PBO:0062394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 15 pseudogene","termid":"PBO:0062394"}


id: PBO:0066231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 39","termid":"PBO:0066231"}


id: PBO:0088052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-like protein involved in thiolation of cytoplasmic tRNAs; receives sulfur from the E1-like enzyme Uba4p and transfers it to tRNA; also functions as a protein tag with roles in nutrient sensing and oxidative stress response","termid":"PBO:0088052"}


id: GO:0050075
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-malate = H2O + maleate.","definition_xrefs":["EC:4.2.1.31","RHEA:23692"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"maleate hydratase activity","secondary_identifiers":["KEGG_REACTION:R02419","MetaCyc:MALEATE-HYDRATASE-RXN"],"synonyms":[{"name":"(R)-malate hydro-lyase (maleate-forming)","type":"related"},{"name":"(R)-malate hydro-lyase activity","type":"related"},{"name":"D-malate hydro-lyase activity","type":"related"},{"name":"malease activity","type":"related"}],"termid":"GO:0050075"}


id: PR:O14339
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl1701 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14339"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L17-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2F12.04","synonyms":[{"name":"Spom972h-rpl1701","type":"exact"}],"termid":"PR:O14339"}


id: PR:Q9UT30
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- brr6 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UT30"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleus export protein brr6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC8F11.06","synonyms":[{"name":"Spom972h-brr6","type":"exact"}],"termid":"PR:Q9UT30"}


id: PBO:0031751
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_acetylation","termid":"PBO:0031751"}


id: PBO:0076763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosyl-DNA phosphodiesterase 2","termid":"PBO:0076763"}


id: MONDO:0005936
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections with nontuberculous mycobacteria (atypical mycobacteria): M. kansasii, M. marinum, M. scrofulaceum, M. flavescens, M. gordonae, M. obuense, M. gilvum, M. duvali, M. szulgai, M. intracellulare (see mycobacterium avium complex;), M. xenopi (littorale), M. ulcerans, M. buruli, M. terrae, M. fortuitum (minetti, giae), M. chelonae.","definition_xrefs":["MESH:D009165"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pneumonia","termid":"MONDO:0005249"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recurrent pneumonia","secondary_identifiers":["UMLS:C0694550","HP:0006532","EFO:0007461","SCTID:699014000","MEDGEN:195802"],"synonyms":[{"name":"recurrent pneumonia","type":"exact"},{"name":"recurrent pneumonia (disease)","type":"exact"}],"termid":"MONDO:0005936","xrefs":{"Monarch":{"xref_id":"0005936"}}}


id: PBO:0033783
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-reversed_RTS1_barrier_polarity","termid":"PBO:0033783"}


id: PBO:0028297
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_old_growing_cell_tip","termid":"PBO:0028297"}


id: PR:Q09188
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- anc1 gene.","definition_xrefs":["UniProtKB:Q09188","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP,ATP carrier protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC530.10c","synonyms":[{"name":"ADP/ATP translocase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ANT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-anc1","type":"exact"},{"name":"adenine nucleotide translocator (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09188"}


id: PR:O94273
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A eukaryotic peptidyl-prolyl cis-trans isomerase B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03809"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidyl-prolyl cis-trans isomerase B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP8B7.25","secondary_identifiers":["UniProtKB:O94273"],"synonyms":[{"name":"PPIase B (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PPIB","type":"exact"},{"name":"cyclophilin 4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"rotamase B (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94273"}


id: GO:0140189
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + histone H1-4 L-lysine (position 26) = S-adenosyl-L-homocysteine + histone H1-4 N6-methyl-L-lysine (position 26).","definition_xrefs":["PMID:19144645"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H1 methyltransferase activity","termid":"GO:0140188"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0008276","GO:0003674","GO:0016741","GO:0016740","GO:0140096","GO:0003824"],"is_obsolete":false,"name":"H1-4K26 methyltransferase activity","termid":"GO:0140189"}


id: GO:0051518
data:
  {"annotated_genes":["SJAG_02392","SJAG_00514","SJAG_03581"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91813,96527,97796],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051519"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of bipolar cell growth, polarized growth from both ends of a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of unidimensional cell growth","termid":"GO:0051512"},{"relation_name":"is_a","term_name":"regulation of bipolar cell growth","termid":"GO:0051516"},{"relation_name":"positively_regulates","term_name":"bipolar cell growth","termid":"GO:0042815"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00514":null,"SJAG_02392":null,"SJAG_03581":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of bipolar cell growth","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"stimulation of bipolar cell growth","type":"narrow"},{"name":"up regulation of bipolar cell growth","type":"exact"},{"name":"up-regulation of bipolar cell growth","type":"exact"},{"name":"upregulation of bipolar cell growth","type":"exact"}],"termid":"GO:0051518","terms_by_termid":{"GO:0051519":null}}


id: PR:O74829
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC530.15c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74829"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized MFS-type transporter C530.15c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC530.15c","synonyms":[{"name":"Spom972h-SPBC530.15c","type":"exact"}],"termid":"PR:O74829"}


id: PBO:0017078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"box H/ACA small nucleolar RNA snR10","termid":"PBO:0017078"}


id: FYPO:0001811
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of 5-phosphoribosyl diphosphate measured in a cell differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"altered 5-phosphoribosyl diphosphate level","synonyms":[{"name":"abnormal 5-phosphoribosyl diphosphate level","type":"exact"},{"name":"altered 5-O-phosphono-alpha-D-ribofuranosyl diphosphate level","type":"exact"},{"name":"altered 5-phosphoribosyl diphosphate level during mitotic cell cycle","type":"related"},{"name":"altered 5-phosphoribosyl diphosphate level during vegetative growth","type":"exact"},{"name":"altered cellular 5-phosphoribosyl diphosphate level","type":"exact"}],"termid":"FYPO:0001811"}


id: MOD:01308
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["Unimod:332#T"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiophosphate labeled with biotin-HPDP","termid":"MOD:00639"},{"relation_name":"is_a","term_name":"modified L-threonine residue","termid":"MOD:00917"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiophosphate labeled with biotin-HPDP -site T","synonyms":[{"name":"Thiophos-S-S-biotin","type":"related"},{"name":"thiophosphate labeled with biotin-HPDP","type":"related"}],"termid":"MOD:01308"}


id: PBO:0084696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial external NADH dehydrogenase; catalyzes the oxidation of cytosolic NADH; Nde1p and Nde2p are involved in providing the cytosolic NADH to the mitochondrial respiratory chain; NDE2 has a paralog, NDE1, that arose from the whole genome duplication","termid":"PBO:0084696"}


id: MONDO:0024677
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An insulin-producing neuroendocrine tumor arising from the beta cells of the pancreas. Patients exhibit symptoms related to hypoglycemia due to inappropriate secretion of insulin.","definition_xrefs":["NCIT:C95598"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pancreatic insulin-producing neuroendocrine tumor","termid":"MONDO:0005048"},{"relation_name":"is_a","term_name":"functional pancreatic neuroendocrine tumor","termid":"MONDO:0023206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"pancreatic insulinoma","secondary_identifiers":["MEDGEN:43907","MedDRA:10022498","SCTID:302822000","DOID:3892","MESH:D007340","NANDO:2200398","UMLS:C0021670","HP:0012197"],"synonyms":[{"name":"Insulinomas","type":"related"},{"name":"Insulomas","type":"related"},{"name":"adenoma, beta cell","type":"related"},{"name":"adenoma, beta-cell","type":"related"},{"name":"adenomas, beta-cell","type":"related"},{"name":"beta cell tumor","type":"related"},{"name":"beta cell tumour","type":"related"},{"name":"beta-cell adenoma","type":"related"},{"name":"beta-cell adenomas","type":"related"},{"name":"beta-cell tumor","type":"related"},{"name":"beta-cell tumors","type":"related"},{"name":"beta-cell tumour","type":"related"},{"name":"beta-cell tumours","type":"related"},{"name":"insulin-producing tumour of islet cells","type":"related"},{"name":"insulinoma","type":"exact"},{"name":"insulinoma tumor suppressor GENE locus","type":"related"},{"name":"insulinoma tumour suppressor GENE locus","type":"related"},{"name":"insuloma","type":"related"},{"name":"islet cell adenoma","type":"related"},{"name":"pancreatic insulinoma","type":"exact"},{"name":"tumor, beta-cell","type":"related"},{"name":"tumors, beta-cell","type":"related"}],"termid":"MONDO:0024677","xrefs":{"Monarch":{"xref_id":"0024677"}}}


id: PBO:0013036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved eukaryotic protein, human CCDC174 ortholog","termid":"PBO:0013036"}


id: MONDO:0009188
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Epilepsy telangiectasia syndrome is characterized by intellectual deficit, epilepsy, palpebral conjunctival telangiectasias and diminished serum IgA, particular facies and a shortened fifth finger. It has been reported in six siblings from a Mexican family. It is probably transmitted as an autosomal recessive trait.","definition_xrefs":["Orphanet:1951"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"epilepsy syndrome","termid":"MONDO:0015650"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epilepsy-telangiectasia syndrome","secondary_identifiers":["MEDGEN:384017","GARD:2168","MESH:C535497","OMIM:226850","UMLS:C1856929"],"synonyms":[{"name":"epilepsy telangiectasia","type":"related"},{"name":"epilepsy-telangiectasia","type":"related"},{"name":"intellectual disability, epilepsy, palpebral conjunctival telangiectasias and IgA deficiency","type":"related"},{"name":"mental retardation, epilepsy, palpebral conjunctival telangiectasias and IgA deficiency","type":"related"}],"termid":"MONDO:0009188","xrefs":{"Monarch":{"xref_id":"0009188"}}}


id: PBO:0013099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snRNP core protein Smg1","termid":"PBO:0013099"}


id: PBO:0029696
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_RNA_polymerase_II_core_promoter_proximal_region_sequence-specific_DNA_binding","termid":"PBO:0029696"}


id: MONDO:1011289
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Dacryocystitis that occurs in rabbit.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dacryocystitis, non-human animal","termid":"MONDO:1010360"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dacryocystitis, rabbit","secondary_identifiers":["OMIA:002610-9986"],"termid":"MONDO:1011289","xrefs":{"Monarch":{"xref_id":"1011289"}}}


id: GO:0010797
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the volume of a multivesicular body as part of the directed movement of substances from endosomes to lysosomes or vacuoles.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of multivesicular body size involved in endosome transport (obsolete GO:0010797)","termid":"GO:0010797"}


id: PBO:0046466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum aminopeptidase 2","termid":"PBO:0046466"}


id: PBO:0045130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication helicase/nuclease 2","termid":"PBO:0045130"}


id: PBO:0091039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F1-FO ATP synthase subunit F","termid":"PBO:0091039"}


id: GO:0140717
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Entry of a symbiont into host plant tissue via the stromata, microscopic pores in the epidermis of the aerial parts of terrestrial plants. These pores are essential for photosynthesis, as they allow CO2 to diffuse into the plant. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:17419713","PMID:16959560","PMID:29307013"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont entry into host","termid":"GO:0044409"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"entry into host through the stromata","termid":"GO:0140717"}


id: PBO:0004288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane peptidase complex catalytic subunit (predicted)","termid":"PBO:0004288"}


id: PBO:0058360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4733","termid":"PBO:0058360"}


id: SO:0000682
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000682 splicing_feature (obsolete SO:0000682)","termid":"SO:0000682"}


id: GO:0007317
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the process in which oskar mRNA is transported to, or maintained in, the oocyte pole plasm.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular mRNA localization","termid":"GO:1904580"},{"relation_name":"regulates","term_name":"pole plasm oskar mRNA localization","termid":"GO:0045451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of pole plasm oskar mRNA localization","synonyms":[{"name":"regulation of oocyte pole plasm oskar mRNA localization","type":"exact"},{"name":"regulation of pole plasm oskar mRNA localisation","type":"exact"}],"termid":"GO:0007317"}


id: FYPO:0003022
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of nocodazole than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0002682","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"resistance to nocodazole","synonyms":[{"name":"resistance to nocodazole during mitotic cell cycle","type":"related"},{"name":"resistance to nocodazole during vegetative growth","type":"exact"},{"name":"resistant to nocodazole","type":"exact"}],"termid":"FYPO:0003022"}


id: GO:0052735
data:
  {"annotated_genes":["SJAG_04453","SJAG_00499"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[81039,112143],"is_not":false,"summary":null,"term":"GO:0052735"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a cytidine in tRNA + S-adenosyl-L-methionine = an N3-methylcytidine in tRNA + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:60908"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA (cytidine) methyltransferase activity","termid":"GO:0016427"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00499":null,"SJAG_04453":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140101"}],"interesting_parent_ids":["GO:0003824","GO:0016741","GO:0003674","GO:0140098","GO:0016740","GO:0140101"],"is_obsolete":false,"name":"tRNA (cytidine-3-)-methyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"S-adenosyl-L-methionine:tRNA (cytosine-3-)-methyltransferase activity","type":"exact"},{"name":"S-adenosyl-L-methionine:tRNA cytosine-3-methyltransferase activity","type":"exact"},{"name":"tRNA (cytosine 3)-methyltransferase activity","type":"exact"},{"name":"tRNA (cytosine-3-)-methyltransferase activity","type":"exact"},{"name":"tRNA cytosine 3-methyltransferase activity","type":"exact"},{"name":"tRNA cytosine-3-methyltransferase activity","type":"exact"},{"name":"transfer ribonucleate cytosine 3-methyltransferase activity","type":"exact"}],"termid":"GO:0052735","terms_by_termid":{"GO:0052735":null}}


id: PBO:0050051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class I, P (pseudogene)","termid":"PBO:0050051"}


id: GO:0015500
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (threonine or serine)(out) + Na+(out) = (threonine or serine)(in) + Na+(in).","definition_xrefs":["TC:2.A.23.4.1"],"gene_count":0,"genotype_count":0,"name":"obsolete threonine/serine:sodium symporter activity (obsolete GO:0015500)","synonyms":[{"name":"threonine/serine:sodium symporter activity","type":"exact"}],"termid":"GO:0015500"}


id: MOD:01538
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces the O4'-hydrogen atom of a tyrosine residue with the Applied Biosystems iTRAQ8plex-114 reporter+balance group.","definition_xrefs":["Unimod:730#Y"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"iTRAQ8plex-114 reporter+balance reagent acylated residue","termid":"MOD:01535"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent O-acylated residue","termid":"MOD:01714"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ8plex-114 reporter+balance reagent O4'-acylated tyrosine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"Representative mass and accurate mass for 113, 114, 116 & 117","type":"related"},{"name":"iTRAQ8plex","type":"related"},{"name":"iTRAQ8plex:13C(7)15N(1)","type":"related"}],"termid":"MOD:01538"}


id: PBO:0113045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chromatin remodeler that regulates various aspects of transcription; acts in conjunction with Isw1b to regulate chromatin structure, maintain chromatin integrity during transcription elongation by RNAP II by preventing trans-histone exchange over coding regions; contains chromo domain, helicase domain and DNA-binding domain; component of both SAGA and SLIK complexes; in human, deletion of CHD1 is a frequent event in prostate cancer","termid":"PBO:0113045"}


id: PR:P78774
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An actin-related protein 2/3 complex subunit 1A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03179"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin-related protein 2/3 complex subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC14C8.06","secondary_identifiers":["UniProtKB:P78774"],"synonyms":[{"name":"Spom972h-ARPC1A","type":"exact"},{"name":"arp2/3 complex 41 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"p41-ARC (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P78774"}


id: MONDO:0017459
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete central polydactyly of toes (obsolete MONDO:0017459)","secondary_identifiers":["SCTID:253967005","Orphanet:295010"],"synonyms":[{"name":"central polydactyly of foot","type":"exact"},{"name":"mesoaxial polydactyly of toes","type":"exact"},{"name":"mirror foot","type":"exact"}],"termid":"MONDO:0017459","xrefs":{"Monarch":{"xref_id":"0017459"}}}


id: MOD:01026
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that inserts or replaces a residue with a norleucine.","definition_xrefs":["DeltaMass:126"],"direct_ancestors":[{"relation_name":"is_a","term_name":"unnatural residue","termid":"MOD:00850"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"norleucine residue (Nle)","synonyms":[{"name":"Nle","type":"exact"}],"termid":"MOD:01026"}


id: MONDO:0013138
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"peripheral vertigo","termid":"MONDO:0004900"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vertigo, benign recurrent, 2","secondary_identifiers":["MEDGEN:442695","OMIM:613106","UMLS:C2751289","MESH:C567749"],"synonyms":[{"name":"BRV2","type":"exact"},{"name":"vertigo, benign recurrent, 2","type":"exact"}],"termid":"MONDO:0013138","xrefs":{"Monarch":{"xref_id":"0013138"}}}


id: PBO:0017005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Meu25","termid":"PBO:0017005"}


id: GO:0044014
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + histone H2B L-lysine (position 5) = CoA + histone H2B N6-acetyl-L-lysine (position 5).","definition_xrefs":["PMID:18552846"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2B acetyltransferase activity","termid":"GO:0044013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0034212"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0140096","GO:0016740","GO:0034212","GO:0016746","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"histone H2BK5 acetyltransferase activity","synonyms":[{"name":"histone acetylase activity (H2B-K5 specific)","type":"exact"},{"name":"histone acetyltransferase activity (H2B-K5 specific)","type":"exact"},{"name":"histone lysine N-acetyltransferase activity (H2B-K5 specific)","type":"exact"}],"termid":"GO:0044014"}


id: PBO:0028145
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_nucleolus,_with_protein_mislocalized_to_cytoplasm","termid":"PBO:0028145"}


id: GO:0099611
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that regulates the potential at which an axon potential is triggered.","definition_xrefs":["ISBN:978-0071390118"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of action potential","termid":"GO:0098900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of action potential firing threshold","termid":"GO:0099611"}


id: PBO:0002667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"medial ring protein Mid2","termid":"PBO:0002667"}


id: MONDO:0004514
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chronic inflammation of the nasal cavity mucosa. It may lead to post-nasal drip resulting in chronic sore throat and chronic cough.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhinitis","termid":"MONDO:0003014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chronic rhinitis","secondary_identifiers":["SCTID:86094006","NCIT:C34479","icd11.foundation:1346915097","UMLS:C0008711","DOID:8252","MEDGEN:3086","ICD9:472.0","ICD10CM:J31.0"],"synonyms":[{"name":"rhinitis - chronic","type":"exact"},{"name":"rhinitis, chronic","type":"exact"}],"termid":"MONDO:0004514","xrefs":{"Monarch":{"xref_id":"0004514"}}}


id: PBO:0004429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase epsilon catalytic subunit Pol2","termid":"PBO:0004429"}


id: PBO:0078671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon TTT) 4-1","termid":"PBO:0078671"}


id: GO:1903793
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of anion transport.","definition_xrefs":["GO_REF:0000058","PMID:11336802","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of monoatomic ion transport","termid":"GO:0043270"},{"relation_name":"is_a","term_name":"regulation of monoatomic anion transport","termid":"GO:0044070"},{"relation_name":"positively_regulates","term_name":"monoatomic anion transport","termid":"GO:0006820"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of monoatomic anion transport","synonyms":[{"name":"activation of anion transport","type":"narrow"},{"name":"positive regulation of anion transport","type":"broad"},{"name":"up regulation of anion transport","type":"exact"},{"name":"up-regulation of anion transport","type":"exact"},{"name":"upregulation of anion transport","type":"exact"}],"termid":"GO:1903793"}


id: GO:0106097
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ceramide stimulus.","definition_xrefs":["PMID:18006463"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to lipid","termid":"GO:0071396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to ceramide","termid":"GO:0106097"}


id: GO:1905723
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of trypanothione biosynthetic process.","definition_xrefs":["PMID:18949025","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of biosynthetic process","termid":"GO:0009890"},{"relation_name":"is_a","term_name":"negative regulation of sulfur metabolic process","termid":"GO:0051175"},{"relation_name":"is_a","term_name":"regulation of trypanothione biosynthetic process","termid":"GO:1905722"},{"relation_name":"negatively_regulates","term_name":"trypanothione biosynthetic process","termid":"GO:0019342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"negatively_regulates","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"negative regulation of trypanothione biosynthetic process","synonyms":[{"name":"down regulation of trypanothione anabolism","type":"exact"},{"name":"down regulation of trypanothione biosynthesis","type":"exact"},{"name":"down regulation of trypanothione biosynthetic process","type":"exact"},{"name":"down regulation of trypanothione formation","type":"exact"},{"name":"down regulation of trypanothione synthesis","type":"exact"},{"name":"down-regulation of trypanothione anabolism","type":"exact"},{"name":"down-regulation of trypanothione biosynthesis","type":"exact"},{"name":"down-regulation of trypanothione biosynthetic process","type":"exact"},{"name":"down-regulation of trypanothione formation","type":"exact"},{"name":"down-regulation of trypanothione synthesis","type":"exact"},{"name":"downregulation of trypanothione anabolism","type":"exact"},{"name":"downregulation of trypanothione biosynthesis","type":"exact"},{"name":"downregulation of trypanothione biosynthetic process","type":"exact"},{"name":"downregulation of trypanothione formation","type":"exact"},{"name":"downregulation of trypanothione synthesis","type":"exact"},{"name":"inhibition of trypanothione anabolism","type":"narrow"},{"name":"inhibition of trypanothione biosynthesis","type":"narrow"},{"name":"inhibition of trypanothione biosynthetic process","type":"narrow"},{"name":"inhibition of trypanothione formation","type":"narrow"},{"name":"inhibition of trypanothione synthesis","type":"narrow"},{"name":"negative regulation of trypanothione anabolism","type":"exact"},{"name":"negative regulation of trypanothione biosynthesis","type":"exact"},{"name":"negative regulation of trypanothione formation","type":"exact"},{"name":"negative regulation of trypanothione synthesis","type":"exact"}],"termid":"GO:1905723"}


id: MONDO:0003272
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"malignant mixed neoplasm","termid":"MONDO:0005853"},{"relation_name":"is_a","term_name":"mixed neoplasm","termid":"MONDO:0021043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mixed epithelial stromal tumor","secondary_identifiers":["DOID:5088","NCIT:C37265"],"synonyms":[{"name":"mixed epithelial stromal tumor","type":"exact"}],"termid":"MONDO:0003272","xrefs":{"Monarch":{"xref_id":"0003272"}}}


id: FYPO:0007557
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing tolnaftate.","definition_xrefs":["PMID:33223513","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0000003","FYPO:0000257","FYPO:0002057","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"normal growth on tolnaftate","synonyms":[{"name":"normal cell population growth in presence of tolnaftate","type":"exact"},{"name":"normal cell population growth on TFT","type":"exact"},{"name":"normal cell population growth on tolnaftate","type":"exact"},{"name":"normal cellular response to tolnaftate","type":"related"},{"name":"normal vegetative cell population growth on tolnaftate","type":"exact"}],"termid":"FYPO:0007557"}


id: MONDO:0030463
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 58","secondary_identifiers":["MEDGEN:1794218","UMLS:C5562008","OMIM:619585","DOID:0112352"],"synonyms":[{"name":"SPGF58","type":"exact"}],"termid":"MONDO:0030463","xrefs":{"Monarch":{"xref_id":"0030463"}}}


id: PBO:0001817
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.2.1.20","termid":"PBO:0001817"}


id: GO:0097182
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and coagulation factor Xa (F10); formation of the complex inhibits the serine protease activity of coagulation factor Xa.","definition_xrefs":["GOC:ans","PMID:6323392"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine protease inhibitor complex","termid":"GO:0097180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"protein C inhibitor-coagulation factor Xa complex","synonyms":[{"name":"PCI-coagulation factor Xa complex","type":"exact"},{"name":"SERPINA5-coagulation factor Xa complex","type":"exact"},{"name":"plasma serine protease inhibitor-coagulation factor Xa complex","type":"exact"},{"name":"serpin A5-coagulation factor Xa complex","type":"exact"}],"termid":"GO:0097182"}


id: PBO:0045120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMRT like family C1","termid":"PBO:0045120"}


id: PBO:0003197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3 methyltransferase Clr4","termid":"PBO:0003197"}


id: PBO:0054369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1763","termid":"PBO:0054369"}


id: GO:0102483
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: H2O + scopolin = beta-D-glucose + scopoletin.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete scopolin beta-glucosidase activity (obsolete GO:0102483)","termid":"GO:0102483"}


id: PBO:0046931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 47 member E","termid":"PBO:0046931"}


id: PBO:0053964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1273","termid":"PBO:0053964"}


id: MONDO:0100466
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A patterned dystrophy of the retinal pigment epithelium characterized by abnormal accumulation of lipofuscin in a butterfly-shaped distribution at the retinal pigment epithelium level. Patients manifest with a slowly progressive loss of vision that often only becomes apparent in old age.","definition_xrefs":["Orphanet:99001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"patterned dystrophy of the retinal pigment epithelium","termid":"MONDO:0018973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"butterfly-shaped pigment dystrophy","secondary_identifiers":["UMLS:C4511237","icd11.foundation:1639469808","GARD:16890","MEDGEN:1381271","SCTID:725590001"],"synonyms":[{"name":"butterfly-shaped pattern dystrophy","type":"exact"},{"name":"butterfly-shaped pigment dystrophy","type":"exact"},{"name":"butterfly-shaped pigmentary macular dystrophy","type":"exact"}],"termid":"MONDO:0100466","xrefs":{"Monarch":{"xref_id":"0100466"}}}


id: GO:0030223
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a myeloid precursor cell acquires the specialized features of a neutrophil.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"granulocyte differentiation","termid":"GO:0030851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neutrophil differentiation","synonyms":[{"name":"neutrophil cell differentiation","type":"exact"},{"name":"neutrophil granulocyte differentiation","type":"exact"},{"name":"neutrophil granulocytopoiesis","type":"exact"}],"termid":"GO:0030223"}


id: GO:0090535
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An ISWI complex that contains an ATPase subunit of the ISWI family (specifically SNF2H in mammals, which contain two ISWI homologs) and WSTF (Williams Syndrome Transcription Factor). WICH plays roles in regulation of RNAP I and III transcription and in DNA replication and repair.","definition_xrefs":["PMID:21810179","PMID:15284901","GOC:krc","PMID:16568949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ISWI-type complex","termid":"GO:0031010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575","GO:0005694"],"is_obsolete":false,"name":"WICH complex","termid":"GO:0090535"}


id: PBO:0088980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-hydroxyacyl-CoA dehydratase involved in very long-chain fatty acid elongation Phs1","termid":"PBO:0088980"}


id: MONDO:0016857
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Blepharophimosis - epicanthus inversus - ptosis (BPES) due to 3q23 microdeletion is a form of BPES, which in addition to the classical eyelids features of BPES, present genitourinary anomalies, spastic diplegia and speech delay.","definition_xrefs":["Orphanet:261559"],"direct_ancestors":[{"relation_name":"is_a","term_name":"blepharophimosis, ptosis, and epicanthus inversus syndrome","termid":"MONDO:0007201"},{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 3","termid":"MONDO:0016902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005047","MONDO:0000426","MONDO:0005328"],"is_obsolete":false,"name":"blepharophimosis-epicanthus inversus-ptosis due to 3q23 rearrangement syndrome","termid":"MONDO:0016857","xrefs":{"Monarch":{"xref_id":"0016857"}}}


id: GO:0061379
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the inferior colliculus over time, from its formation to the mature structure. The inferior colliculus (IC) (Latin, lower hill) is the principal midbrain nucleus of the auditory pathway and receives input from several more peripheral brainstem nuclei in the auditory pathway, as well as inputs from the auditory cortex. The inferior colliculus has three subdivisions: the central nucleus (CIC), a dorsal cortex (DCIC) by which it is surrounded, and an external cortex (ICX) which is located laterally.","definition_xrefs":["GOC:dph","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"corpora quadrigemina development","termid":"GO:0061378"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inferior colliculus development","termid":"GO:0061379"}


id: PBO:0084400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lunapark family member involved in ER network formation; regulates the ER asymmetry-induced inheritance block during ER stress; localizes to ER junctions and this localization is regulated by the yeast atlastin ortholog Sey1p; required for reticulophagy where it is proposed to stabilize the actin-dependent remodeling of the ER; interacts with the reticulon protein Rtn1p; induced in response to the DNA-damaging agent MMS","termid":"PBO:0084400"}


id: MOD:00244
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-cysteine residue and an L-serine residue to form L-cysteine oxazoline-4-carboxylic acid.","definition_xrefs":["RESID:AA0239","PubMed:1880060"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxazole/oxazoline ring crosslinked residues (Ser)","termid":"MOD:01421"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"L-cysteine oxazoline-4-carboxylic acid","synonyms":[{"name":"(4S)-2-[(1R)-1-amino-2-sulfanylethyl]-4,5-dihydro-1,3-oxazole-4-carboxylic acid","type":"exact"},{"name":"2-[1-azanyl-2-sulfanylethyl]-4,5-dihydro-1,3-oxazole-4-carboxylic acid","type":"exact"},{"name":"CROSSLNK Oxazoline-4-carboxylic acid (Cys-Ser)","type":"exact"},{"name":"L-cysteine oxazoline-4-carboxylic acid","type":"exact"}],"termid":"MOD:00244"}


id: GO:0070721
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A transcription factor complex that consists of a Stat1-Stat2 heterodimer and the IRF9 protein.","definition_xrefs":["GOC:mah","PMID:8943351"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulator complex","termid":"GO:0090575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"ISGF3 complex","synonyms":[{"name":"interferon-stimulated gene factor 3 transcription complex","type":"exact"}],"termid":"GO:0070721"}


id: MONDO:0007832
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon antiviral depressor","secondary_identifiers":["OMIM:147560","UMLS:C1840150","MEDGEN:333493"],"synonyms":[{"name":"interferon antiviral depressor","type":"exact"}],"termid":"MONDO:0007832","xrefs":{"Monarch":{"xref_id":"0007832"}}}


id: PR:O94515
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A T-complex protein 1 subunit zeta that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02648","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T-complex protein 1 subunit zeta (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC646.11","secondary_identifiers":["UniProtKB:O94515"],"synonyms":[{"name":"CCT-zeta (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-CCT6A","type":"exact"},{"name":"TCP-1-zeta (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94515"}


id: MONDO:0003538
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm of immature malignant lymphocytes (lymphoblasts) committed to the B-cell or T-cell lineage. Neoplasms involving the bone marrow and the peripheral blood are called precursor lymphoblastic leukemias or acute lymphoblastic leukemias. Neoplasms involving primarily lymph nodes or extranodal sites are called lymphoblastic lymphomas. -- 2003","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphoid neoplasm","termid":"MONDO:0005157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"precursor lymphoblastic lymphoma/leukemia","secondary_identifiers":["MEDGEN:235492","NCIT:C7055","DOID:5600","UMLS:C1335469"],"synonyms":[{"name":"precursor lymphoblastic leukemia/lymphoma","type":"exact"},{"name":"precursor lymphoblastic lymphoma/leukemia","type":"exact"},{"name":"precursor lymphoid neoplasm","type":"exact"}],"termid":"MONDO:0003538","xrefs":{"Monarch":{"xref_id":"0003538"}}}


id: GO:0010520
data:
  {"annotated_genes":["SJAG_04205","SJAG_00266","SJAG_02592","SJAG_03438","SJAG_01677","SJAG_03699","SJAG_01401"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91116,96325,103581,118284,119078],"is_not":false,"summary":null,"term":"GO:0010520"},{"annotations":[109944],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010846"},{"annotations":[109947],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045128"},{"annotations":[91008],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010845"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of recombination during meiosis. Reciprocal meiotic recombination is the cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA recombination","termid":"GO:0000018"},{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"reciprocal meiotic recombination","termid":"GO:0007131"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_01401":null,"SJAG_01677":null,"SJAG_02592":null,"SJAG_03438":null,"SJAG_03699":null,"SJAG_04205":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006310"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0006310","GO:0007049"],"is_obsolete":false,"name":"regulation of reciprocal meiotic recombination","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010520","terms_by_termid":{"GO:0010520":null,"GO:0010845":null,"GO:0010846":null,"GO:0045128":null}}


id: PBO:0031874
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deletion Bleomycin Sensitive","termid":"PBO:0031874"}


id: PBO:0013132
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPHerical shape","termid":"PBO:0013132"}


id: MONDO:0004682
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant form of neoplasm of retromolar area.","definition_xrefs":["MONDO:patterns/malignant"],"direct_ancestors":[{"relation_name":"is_a","term_name":"jaw cancer","termid":"MONDO:0002131"},{"relation_name":"is_a","term_name":"oral cavity cancer","termid":"MONDO:0005515"},{"relation_name":"is_a","term_name":"neoplasm of retromolar area","termid":"MONDO:0037744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"retromolar area cancer","secondary_identifiers":["ICD9:145.6","DOID:8930","ICD10CM:C06.2","MEDGEN:509268","SCTID:363391009","UMLS:C0153379"],"synonyms":[{"name":"malignant neoplasm of retromolar area","type":"exact"},{"name":"malignant tumor of retromolar area","type":"exact"},{"name":"malignant tumour of retromolar area","type":"exact"},{"name":"neoplasm of retromolar area, malignant","type":"exact"}],"termid":"MONDO:0004682","xrefs":{"Monarch":{"xref_id":"0004682"}}}


id: PBO:0030087
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-vacuolated","termid":"PBO:0030087"}


id: MONDO:0020345
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete presynaptic congenital myasthenic syndrome (obsolete MONDO:0020345)","secondary_identifiers":["Orphanet:98914"],"synonyms":[{"name":"presynaptic congenital myasthenic syndromes","type":"related"}],"termid":"MONDO:0020345","xrefs":{"Monarch":{"xref_id":"0020345"}}}


id: PBO:0083185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the Ty2 LTR YBLWdelta2; YBL107W-A has a paralog, YER138W-A, that arose from a single-locus duplication","termid":"PBO:0083185"}


id: MONDO:0800046
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, genetic congenital hypothyroidism disorder characterized by mild global developmental delay in childhood, short stature, delayed bone age, and abnormal thyroid and selenium levels in serum (high total and free T4 concentrations, low T3, high reverse T3, normal to high TSH, decreased selenium). Intellectual disability, primary infertility, hypotonia, muscle weakness, and impaired hearing have also been reported.","definition_xrefs":["Orphanet:171706"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peripheral hypothyroidism","termid":"MONDO:0016412"},{"relation_name":"is_a","term_name":"thyroid hormone metabolism, abnormal","termid":"MONDO:0031432"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thyroid hormone metabolism, abnormal 1","secondary_identifiers":["MEDGEN:1801974","UMLS:C5676891","OMIM:609698","GARD:17068","MESH:C566454"],"synonyms":[{"name":"THMA1","type":"exact"},{"name":"short stature-delayed bone age due to thyroid hormone metabolism deficiency","type":"exact"},{"name":"thyroid hormone metabolism, abnormal","type":"broad"}],"termid":"MONDO:0800046","xrefs":{"Monarch":{"xref_id":"0800046"}}}


id: FYPO:0001028
data:
  {"alleles_by_uniquename":{"SJAG_04332:allele-1":{"allele_type":"amino_acid_mutation","description":"I30T,T572P","gene_uniquename":"SJAG_04332","name":"cdc25-D9","uniquename":"SJAG_04332:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121354],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007701"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the mitotic cell cycle is arrested in any part of interphase, under conditions where arrest is not a normal occurrence.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormally arrested mitotic cell cycle progression","termid":"FYPO:0000502"},{"relation_name":"is_a","term_name":"cell cycle arrest in mitotic interphase","termid":"FYPO:0000837"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04332":null},"genotype_count":1,"genotypes_by_uniquename":{"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"abnormal cell cycle arrest in mitotic interphase","references_by_uniquename":{"PMID:25866389":null},"single_locus_annotated_genes":["SJAG_04332"],"single_locus_genotype_uniquenames":["cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal mitotic cell cycle arrest in interphase","type":"exact"},{"name":"abnormal mitotic interphase cell cycle arrest","type":"exact"}],"termid":"FYPO:0001028","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0007701":null,"FYPO_EXT:0000001":null}}


id: FYPO:0003621
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which posttranscriptional addition of a methyl group to the 2'-oxygen atom of a nucleotide residue in an U6 snRNA molecule is abolished.","definition_xrefs":["GO:1990438","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished RNA modification","termid":"FYPO:0000371"},{"relation_name":"is_a","term_name":"abnormal gene expression","termid":"FYPO:0006551"},{"relation_name":"is_a","term_name":"abnormal snRNA modification","termid":"FYPO:0008111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0006551","FYPO:0005447","FYPO:0000294"],"is_obsolete":false,"name":"abolished U6 2'-O-snRNA methylation","synonyms":[{"name":"U6 2'-O-snRNA methylation abolished","type":"exact"},{"name":"U6 2'-O-snRNA methylation abolished during vegetative growth","type":"exact"},{"name":"abolished U6 2'-O-snRNA methylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003621"}


id: GO:1901949
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate.","definition_xrefs":["GOC:TermGenie","PMID:22027823"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid biosynthetic process","termid":"GO:0008654"},{"relation_name":"is_a","term_name":"diterpenoid biosynthetic process","termid":"GO:0016102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthetic process","synonyms":[{"name":"5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate anabolism","type":"exact"},{"name":"5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate biosynthesis","type":"exact"},{"name":"5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate formation","type":"exact"},{"name":"5alpha,9alpha,10beta-labda-8(20),13-dien-15-yl diphosphate synthesis","type":"exact"}],"termid":"GO:1901949"}


id: PBO:0074783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 4B","termid":"PBO:0074783"}


id: GO:0004329
data:
  {"annotated_genes":["SJAG_00106","SJAG_04156"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[65184,66364],"is_not":false,"summary":null,"term":"GO:0004329"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + formate + tetrahydrofolate = ADP + phosphate + 10-formyltetrahydrofolate.","definition_xrefs":["EC:6.3.4.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00106":null,"SJAG_04156":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016874","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"formate-tetrahydrofolate ligase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["Reactome:R-HSA-5696839","Reactome:R-HSA-200711","MetaCyc:FORMATETHFLIG-RXN","RHEA:20221","Reactome:R-HSA-6801456"],"synonyms":[{"name":"10-formyl-THF synthetase activity","type":"exact"},{"name":"10-formyltetrahydrofolate synthetase activity","type":"related"},{"name":"formate:tetrahydrofolate ligase (ADP-forming)","type":"related"},{"name":"formyltetrahydrofolate synthetase activity","type":"related"},{"name":"tetrahydrofolate formylase activity","type":"related"},{"name":"tetrahydrofolic formylase activity","type":"related"}],"termid":"GO:0004329","terms_by_termid":{"GO:0004329":null}}


id: PBO:0047004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A7","termid":"PBO:0047004"}


id: GO:0140120
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A histone reader that recognizes a histone H2A ubiquitinated at lysine 15.","definition_xrefs":["PMID:23760478"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2A reader activity","termid":"GO:0140054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0140566"},{"rel_name":"is_a","termid":"GO:0060090"}],"interesting_parent_ids":["GO:0060090","GO:0030674","GO:0003674","GO:0140566"],"is_obsolete":false,"name":"histone H2AK15ub reader activity","termid":"GO:0140120"}


id: PR:O14336
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug80 gene.","definition_xrefs":["UniProtKB:O14336","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 80 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1D7.03","synonyms":[{"name":"Spom972h-mug80","type":"exact"}],"termid":"PR:O14336"}


id: MONDO:0010504
data:
  {"annotated_genes":["SJAG_00771"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87218],"is_not":false,"summary":null,"term":"MONDO:0010504"}]},"cv_name":"mondo","definition":"Any primary immunodeficiency disease in which the cause of the disease is a mutation in the ATP6AP1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn error of immunity","termid":"MONDO:0003778"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency 47","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0112002","MEDGEN:934786","OMIM:300972","UMLS:C4310819"],"synonyms":[{"name":"ATP6AP1 primary immunodeficiency disease","type":"exact"},{"name":"IMD47","type":"exact"},{"name":"immunodeficiency 47","type":"exact"},{"name":"immunodeficiency 47, X-linked recessive","type":"exact"},{"name":"immunodeficiency 47; IMD47","type":"exact"},{"name":"immunodeficiency and hepatopathy with or without neurologic features","type":"related"},{"name":"immunodeficiency type 47","type":"exact"},{"name":"primary immunodeficiency disease caused by mutation in ATP6AP1","type":"exact"}],"termid":"MONDO:0010504","terms_by_termid":{"MONDO:0010504":null},"xrefs":{"Monarch":{"xref_id":"0010504"}}}


id: PBO:0002934
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.4.46","termid":"PBO:0002934"}


id: MONDO:0700191
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fibrosarcoma that occurs in a chicken.","definition_xrefs":["NCIT:C134557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sarcoma, non-human animal","termid":"MONDO:0700131"},{"relation_name":"is_a","term_name":"chicken neoplasm","termid":"MONDO:0700189"},{"relation_name":"is_a","term_name":"connective tissue disorder, non-human animal","termid":"MONDO:1011309"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chicken fibrosarcoma","termid":"MONDO:0700191","xrefs":{"Monarch":{"xref_id":"0700191"}}}


id: GO:0009320
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that possesses phosphoribosylaminoimidazole carboxylase activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"phosphoribosylaminoimidazole carboxylase complex","termid":"GO:0009320"}


id: GO:0090413
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any negative regulation of transcription from RNA polymerase II promoter that is involved in fatty acid biosynthetic process.","definition_xrefs":["GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transcription from RNA polymerase II promoter involved in fatty acid biosynthetic process (obsolete GO:0090413)","synonyms":[{"name":"negative regulation of transcription from RNA polymerase II promoter involved in fatty acid biosynthetic process","type":"exact"}],"termid":"GO:0090413"}


id: GO:0018328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transient phosphorylation of peptidyl-histidine to form 3'-phospho-L-histidine (otherwise known as pi-phosphohistidine, pros-phosphohistidine).","definition_xrefs":["RESID:AA0036"],"gene_count":0,"genotype_count":0,"name":"obsolete enzyme active site formation via 3'-phospho-L-histidine (obsolete GO:0018328)","termid":"GO:0018328"}


id: PATO:0005006
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A morphology quality inhering in a bearer by virtue of the bearer's being morphologically distinguishable from another entity.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphology","termid":"PATO:0000051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"differentiated from","synonyms":[{"name":"distinct from","type":"exact"}],"termid":"PATO:0005006"}


id: PBO:0065415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome subunit beta 3 pseudogene 1","termid":"PBO:0065415"}


id: PBO:0075425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm associated antigen 11B","termid":"PBO:0075425"}


id: PATO:0001199
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel.","definition_xrefs":["ISBN:0881923214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"linear","termid":"PATO:0001199"}


id: FYPO:0002533
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleoplasm is abnormal during a cellular response to hydrogen peroxide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to nucleoplasm","termid":"FYPO:0002529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal protein localization to nucleoplasm during cellular response to hydrogen peroxide","synonyms":[{"name":"abnormal protein localisation to nucleoplasm during cellular response to hydrogen peroxide","type":"exact"},{"name":"abnormal protein localization to nucleoplasm during cellular response to H2O2","type":"exact"},{"name":"abnormal protein localization to nucleoplasm during cellular response to hydrogen peroxide during mitotic cell cycle","type":"related"},{"name":"abnormal protein localization to nucleoplasm during cellular response to hydrogen peroxide during vegetative growth","type":"exact"}],"termid":"FYPO:0002533"}


id: MONDO:0800430
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dyslexia, susceptibility to, 7","secondary_identifiers":["UMLS:C1851969","MEDGEN:338830"],"synonyms":[{"name":"DYX7","type":"exact"}],"termid":"MONDO:0800430","xrefs":{"Monarch":{"xref_id":"0800430"}}}


id: PBO:0044132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTBP1 antisense RNA","termid":"PBO:0044132"}


id: PBO:0062619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily Y member 1 pseudogene","termid":"PBO:0062619"}


id: PBO:0031075
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-biological_process_phenotype","termid":"PBO:0031075"}


id: PBO:0077138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tight junction associated protein 1","termid":"PBO:0077138"}


id: PR:Q9US05
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein AATF that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR15565:SF0","OMA:SCHPO00701"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein bfr2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC664.08c","secondary_identifiers":["UniProtKB:Q9US05"],"synonyms":[{"name":"Spom972h-AATF","type":"exact"}],"termid":"PR:Q9US05"}


id: PBO:0002283
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.1.86","termid":"PBO:0002283"}


id: MONDO:0018225
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Anaplastic lymphoma kinase (ALK)-positive diffuse large B-cell lymphoma is a very rare variant of diffuse large B-cell lymphoma (DLBCL) mainly affecting middle-aged immunocompetent men and characterized by a consistent primary involvement of lymph nodes (mainly in the cervical and mediastinum lymph nodes) and with infrequent extra nodal involvement of the bone marrow and other extra-nodal sites (head and neck region, liver, spleen, and gastrointestinal tract). It has an aggressive disease course, and is associated with a poor prognosis.","definition_xrefs":["Orphanet:364043"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diffuse large B-cell lymphoma","termid":"MONDO:0018905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"ALK-positive large B-cell lymphoma","secondary_identifiers":["GARD:21564","NCIT:C7225","SCTID:715950008","icd11.foundation:2077559619","MEDGEN:232429","ICDO:9737/3","UMLS:C1333294"],"synonyms":[{"name":"ALK+ LBCL","type":"exact"},{"name":"ALK+ large B-cell lymphoma","type":"exact"},{"name":"ALK-DLBCL","type":"exact"},{"name":"ALK-positive large B-cell lymphoma","type":"exact"},{"name":"diffuse large B-cell lymphoma with expression of full-length ALK","type":"exact"},{"name":"diffuse large B-cell lymphoma with expression of full-length anaplastic lymphoma kinase","type":"exact"}],"termid":"MONDO:0018225","xrefs":{"Monarch":{"xref_id":"0018225"}}}


id: GO:0015427
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete ABC-type efflux porter activity (obsolete GO:0015427)","synonyms":[{"name":"ABC-type efflux porter activity","type":"exact"}],"termid":"GO:0015427"}


id: MONDO:0005048
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An insulin-producing neuroendocrine tumor arising from the beta cells of the pancreas. It may or may not be associated with inappropriate secretion of insulin and an associated clinical syndrome.","definition_xrefs":["NCIT:C3140"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pancreatic neuroendocrine tumor","termid":"MONDO:0019954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"pancreatic insulin-producing neuroendocrine tumor","secondary_identifiers":["UMLS:C5848150","ICDO:8151/1","EFO:0000549","GARD:3010","ICDO:8151/0","MEDGEN:1844884","Orphanet:97279"],"synonyms":[{"name":"Beta cell tumor","type":"exact"},{"name":"Beta cell tumor of pancreas","type":"exact"},{"name":"Beta cell tumor of the pancreas","type":"exact"},{"name":"Beta cell tumour","type":"exact"},{"name":"Beta cell tumour of pancreas","type":"exact"},{"name":"Beta cell tumour of the pancreas","type":"exact"},{"name":"beta cell neoplasm","type":"exact"},{"name":"beta cell tumor of the pancreas","type":"exact"},{"name":"beta cell tumour of the pancreas","type":"exact"},{"name":"insulin-producing islet cell tumor","type":"exact"},{"name":"insulin-producing islet cell tumour","type":"exact"},{"name":"insulin-producing tumor of islet cells","type":"exact"},{"name":"insulin-producing tumor of the islet cells","type":"exact"},{"name":"insulin-producing tumour of islet cells","type":"exact"},{"name":"insulin-producing tumour of the islet cells","type":"exact"},{"name":"pancreatic Beta cell tumor","type":"exact"},{"name":"pancreatic Beta cell tumour","type":"exact"},{"name":"pancreatic insulin producing NET","type":"exact"},{"name":"pancreatic insulin producing neoplasm","type":"exact"},{"name":"pancreatic insulin producing tumor","type":"exact"},{"name":"pancreatic insulin producing tumour","type":"exact"},{"name":"pancreatic insulin-producing neuroendocrine tumor","type":"exact"},{"name":"pancreatic insulin-producing tumor","type":"exact"},{"name":"pancreatic insulin-producing tumour","type":"exact"}],"termid":"MONDO:0005048","xrefs":{"Monarch":{"xref_id":"0005048"}}}


id: PBO:0039516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 31","termid":"PBO:0039516"}


id: PBO:0004146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ric8 family guanine nulceotide exchange factor synembryn family","termid":"PBO:0004146"}


id: GO:0047022
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 7-beta-hydroxysteroid + NADP+ = a 7-oxosteroid + NADPH + H+.","definition_xrefs":["RHEA:20233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0033764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"7-beta-hydroxysteroid dehydrogenase (NADP+) activity","secondary_identifiers":["MetaCyc:1.1.1.201-RXN","Wikipedia:7beta-hydroxysteroid_dehydrogenase_(NADP+)","EC:1.1.1.201"],"synonyms":[{"name":"7beta-hydroxysteroid dehydrogenase (NADP+)","type":"related"},{"name":"7beta-hydroxysteroid:NADP+ 7-oxidoreductase activity","type":"related"},{"name":"NADP-dependent 7-beta-hydroxysteroid dehydrogenase activity","type":"related"},{"name":"NADP-dependent 7beta-hydroxysteroid dehydrogenase activity","type":"related"}],"termid":"GO:0047022"}


id: PBO:0061843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Opa interacting protein 5","termid":"PBO:0061843"}


id: GO:0060339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of a type I interferon-mediated signaling pathway.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine-mediated signaling pathway","termid":"GO:0001960"},{"relation_name":"is_a","term_name":"negative regulation of innate immune response","termid":"GO:0045824"},{"relation_name":"is_a","term_name":"regulation of type I interferon-mediated signaling pathway","termid":"GO:0060338"},{"relation_name":"negatively_regulates","term_name":"type I interferon-mediated signaling pathway","termid":"GO:0060337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of type I interferon-mediated signaling pathway","synonyms":[{"name":"negative regulation of type I interferon-mediated signalling pathway","type":"exact"}],"termid":"GO:0060339"}


id: GO:0008483
data:
  {"annotated_genes":["SJAG_04149","SJAG_04678","SJAG_04728","SJAG_02791","SJAG_03055","SJAG_03312","SJAG_00714","SJAG_00495","SJAG_03306","SJAG_02408","SJAG_04988","SJAG_04145","SJAG_03961","SJAG_01019","SJAG_03434","SJAG_00673"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97725],"is_not":false,"summary":null,"term":"GO:0008483"},{"annotations":[78557,74430,101334],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047536"},{"annotations":[74893],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046820"},{"annotations":[57395],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034386"},{"annotations":[78069],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004015"},{"annotations":[80223],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004360"},{"annotations":[58316],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004400"},{"annotations":[75704],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016212"},{"annotations":[113228],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004021"},{"annotations":[79587,72768],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004069"},{"annotations":[112425],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052656"},{"annotations":[112426],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052654"},{"annotations":[100296],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004838"},{"annotations":[112427],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052655"},{"annotations":[63400],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003992"},{"annotations":[81463],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004648"},{"annotations":[80281],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004587"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.","definition_xrefs":["EC:2.6.1.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring nitrogenous groups","termid":"GO:0016769"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00495":null,"SJAG_00673":null,"SJAG_00714":null,"SJAG_01019":null,"SJAG_02408":null,"SJAG_02791":null,"SJAG_03055":null,"SJAG_03306":null,"SJAG_03312":null,"SJAG_03434":null,"SJAG_03961":null,"SJAG_04145":null,"SJAG_04149":null,"SJAG_04678":null,"SJAG_04728":null,"SJAG_04988":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016769","GO:0016740"],"is_obsolete":false,"name":"transaminase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-1237102"],"synonyms":[{"name":"aminotransferase activity","type":"exact"}],"termid":"GO:0008483","terms_by_termid":{"GO:0003992":null,"GO:0004015":null,"GO:0004021":null,"GO:0004069":null,"GO:0004360":null,"GO:0004400":null,"GO:0004587":null,"GO:0004648":null,"GO:0004838":null,"GO:0008483":null,"GO:0016212":null,"GO:0034386":null,"GO:0046820":null,"GO:0047536":null,"GO:0052654":null,"GO:0052655":null,"GO:0052656":null}}


id: PBO:0075948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stromal antigen 3-like 3 (pseudogene)","termid":"PBO:0075948"}


id: PBO:0059117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monooxygenase DBH like 1","termid":"PBO:0059117"}


id: PBO:0057095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 191","termid":"PBO:0057095"}


id: PBO:0049208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate ionotropic receptor NMDA type subunit 2B","termid":"PBO:0049208"}


id: MONDO:0006114
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete bladder squamous cell carcinoma (obsolete MONDO:0006114)","termid":"MONDO:0006114","xrefs":{"Monarch":{"xref_id":"0006114"}}}


id: PR:P79081
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A diamine acetyltransferase 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00741","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetyltransferase ats1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.07c","secondary_identifiers":["UniProtKB:P79081"],"synonyms":[{"name":"Spom972h-SAT2","type":"exact"}],"termid":"PR:P79081"}


id: MONDO:0007880
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital laryngeal web is a rare malformation consisting of a membrane-like structure that extends across the laryngeal lumen close to the level of the vocal cords.","definition_xrefs":["Orphanet:2374"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"laryngeal disorder","termid":"MONDO:0004382"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital laryngeal web","secondary_identifiers":["OMIM:150360","GARD:16596","MESH:C537676","MedDRA:10023871","MEDGEN:372058","icd11.foundation:1641764672","SCTID:444921008","UMLS:C1835494","MESH:C563636","NCIT:C98970"],"synonyms":[{"name":"Laryngeal web","type":"exact"},{"name":"gay Feinmesser Cohen syndrome","type":"related"},{"name":"glottic web, congenital anterior","type":"related"},{"name":"laryngeal web, congenital heart disease and low stature","type":"related"},{"name":"laryngeal web, familial","type":"related"},{"name":"subglottic Bar","type":"related"},{"name":"subglottic bar, congenital heart disease and low stature","type":"related"},{"name":"subglottic web","type":"related"}],"termid":"MONDO:0007880","xrefs":{"Monarch":{"xref_id":"0007880"}}}


id: MONDO:1010885
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any neuronal ceroid lipofuscinosis that occurs in dogs due to a mutation in the TPP1 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuronal ceroid lipofuscinosis, dog","termid":"MONDO:1011570"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuronal ceroid lipofuscinosis, TPP1-related, dog","secondary_identifiers":["OMIA:001472-9615"],"synonyms":[{"name":"neuronal ceroid lipofuscinosis, 2, dog","type":"related"}],"termid":"MONDO:1010885","xrefs":{"Monarch":{"xref_id":"1010885"}}}


id: MONDO:0013555
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Hermansky-Pudlak syndrome in which the cause of the disease is a mutation in the HPS3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Hermansky-Pudlak syndrome without pulmonary fibrosis","termid":"MONDO:0016502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005066","MONDO:0005570"],"is_obsolete":false,"name":"Hermansky-Pudlak syndrome 3","secondary_identifiers":["DOID:0060541","MEDGEN:854708","OMIM:614072","UMLS:C3888001","GARD:18333"],"synonyms":[{"name":"HPS3","type":"related"},{"name":"HPS3 Hermansky-Pudlak syndrome","type":"exact"},{"name":"Hermansky-Pudlak syndrome 3","type":"exact"},{"name":"Hermansky-Pudlak syndrome caused by mutation in HPS3","type":"exact"},{"name":"Hermansky-Pudlak syndrome type 3","type":"exact"}],"termid":"MONDO:0013555","xrefs":{"Monarch":{"xref_id":"0013555"}}}


id: PBO:0050882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IDI2 antisense RNA 1","termid":"PBO:0050882"}


id: GO:0006385
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase III promoter by the addition of ribonucleotides catalyzed by RNA polymerase III.","definition_xrefs":["GOC:mah","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated transcription elongation","termid":"GO:0006354"},{"relation_name":"part_of","term_name":"transcription by RNA polymerase III","termid":"GO:0006383"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006351"],"is_obsolete":false,"name":"transcription elongation by RNA polymerase III","secondary_identifiers":["Reactome:R-HSA-73780"],"synonyms":[{"name":"RNA elongation from Pol III promoter","type":"exact"},{"name":"RNA polymerase III transcription elongation factor activity","type":"related"},{"name":"transcription elongation by RNA polymerase III promoter","type":"exact"},{"name":"transcription elongation from RNA polymerase III promoter","type":"exact"}],"termid":"GO:0006385"}


id: PBO:0049643
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 46","termid":"PBO:0049643"}


id: MONDO:0018246
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete homozygous 2p21 microdeletion syndrome (obsolete MONDO:0018246)","secondary_identifiers":["Orphanet:369886"],"synonyms":[{"name":"2p21 contiguous gene deletion syndrome","type":"exact"}],"termid":"MONDO:0018246","xrefs":{"Monarch":{"xref_id":"0018246"}}}


id: GO:0044634
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of complement activation by the alternative pathway, in a different organism.","definition_xrefs":["GOC:jl","PMID:20837040"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of complement activation, alternative pathway in another organism (obsolete GO:0044634)","synonyms":[{"name":"negative regulation of complement activation, alternative pathway in other organism","type":"exact"}],"termid":"GO:0044634"}


id: MONDO:0000748
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the mucosal lining of the mastoid antrum and mastoid air cell system of the mastoid process.","definition_xrefs":["NCIT:C128368"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone inflammation disease","termid":"MONDO:0002614"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mastoiditis","secondary_identifiers":["DOID:0060322","HP:0000265","ICD9:383.9","MEDGEN:7480","UMLS:C0024904","SCTID:52404001","MESH:D008417"],"synonyms":[{"name":"inflammation of mastoid process of temporal bone","type":"exact"},{"name":"mastoid process of temporal bone inflammation","type":"exact"},{"name":"mastoid process of temporal boneitis","type":"exact"},{"name":"mastoiditis","type":"exact"},{"name":"mastoiditis (disease)","type":"exact"}],"termid":"MONDO:0000748","xrefs":{"Monarch":{"xref_id":"0000748"}}}


id: PBO:0061777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OCA2 melanosomal transmembrane protein","termid":"PBO:0061777"}


id: MONDO:0013338
data:
  {"annotated_genes":["SJAG_04409","SJAG_00488"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88983,88984],"is_not":false,"summary":null,"term":"MONDO:0013338"}]},"cv_name":"mondo","definition":"Autosomal recessive intermediate Charcot-Marie-Tooth disease type B is an extremely rare subtype of autosomal recessive intermediate Charcot-Marie-Tooth (CMT) disease characterized by a CMT neuropathy associated with developmental delay, self-abusive behavior, dysmorphic features and vestibular Schwannoma. Motor nerve conduction velocities demonstrate features of both demyelinating and axonal pathology.","definition_xrefs":["Orphanet:254334"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive intermediate Charcot-Marie-Tooth disease","termid":"MONDO:0017058"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00488":null,"SJAG_04409":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244","MONDO:0006025"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease recessive intermediate B","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0110204","UMLS:C3150897","OMIM:613641","MEDGEN:462247","GARD:12454"],"synonyms":[{"name":"CMTRIB","type":"exact"},{"name":"Charcot-Marie-Tooth disease caused by mutation in KARS","type":"exact"},{"name":"Charcot-Marie-Tooth disease recessive intermediate type B","type":"exact"},{"name":"Charcot-Marie-Tooth disease, recessive Intermediate type B","type":"exact"},{"name":"Charcot-Marie-Tooth disease, recessive intermediate B","type":"related"},{"name":"Charcot-Marie-Tooth disease, recessive intermediate, B","type":"related"},{"name":"Charcot-Marie-Tooth neuropathy recessive intermediate B","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, recessive Intermediate B","type":"related"},{"name":"KARS Charcot-Marie-Tooth disease","type":"exact"},{"name":"RI-CMT type B","type":"exact"},{"name":"RI-CMTB","type":"exact"},{"name":"autosomal recessive intermediate Charcot-Marie-Tooth disease type B","type":"exact"}],"termid":"MONDO:0013338","terms_by_termid":{"MONDO:0013338":null},"xrefs":{"Monarch":{"xref_id":"0013338"}}}


id: PBO:0035948
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_methylation_at_mating_type_locus_during_vegetative_growth","termid":"PBO:0035948"}


id: GO:0061372
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by the binding of a member of the activin family to its receptor on the surface of a target cell, and contributing to the process of heart jogging.","definition_xrefs":["GOC:dph","GOC:mtg_heart","GOC:signaling"],"gene_count":0,"genotype_count":0,"name":"obsolete activin receptor signaling pathway involved in heart jogging (obsolete GO:0061372)","synonyms":[{"name":"activin receptor signalling pathway involved in heart jogging","type":"exact"}],"termid":"GO:0061372"}


id: GO:0016112
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of polyterpenoid compounds, terpenoids with more than eight isoprene units.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpenoid biosynthetic process","termid":"GO:0016114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"polyterpenoid biosynthetic process","synonyms":[{"name":"polyterpene biosynthesis","type":"narrow"},{"name":"polyterpene biosynthetic process","type":"narrow"},{"name":"polyterpenoid anabolism","type":"exact"},{"name":"polyterpenoid biosynthesis","type":"exact"},{"name":"polyterpenoid formation","type":"exact"},{"name":"polyterpenoid synthesis","type":"exact"}],"termid":"GO:0016112"}


id: PBO:0066080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinoic acid receptor responder 2 pseudogene 8","termid":"PBO:0066080"}


id: PBO:0048915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A8 family member J","termid":"PBO:0048915"}


id: PBO:0000796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylenetetrahydrofolate reductase Met9","termid":"PBO:0000796"}


id: PBO:0029508
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_swollen_spore","termid":"PBO:0029508"}


id: PBO:0087334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Specific assembly chaperone for ribosomal protein Rpl10p; co-translationally associates with nascent Rpl10p, preventing aggregation; involved in biogenesis of the ribosomal large subunit; contains multiple WD repeats; interacts genetically and physically with Qsr1p; protein abundance increases in response to DNA replication stress","termid":"PBO:0087334"}


id: GO:0043161
data:
  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chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-dependent protein catabolic process","termid":"GO:0006511"},{"relation_name":"is_a","term_name":"proteasomal protein catabolic 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id: GO:0046596
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the viral entry into the host cell.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by symbiont of entry into host","termid":"GO:0052372"},{"relation_name":"is_a","term_name":"regulation of viral life cycle","termid":"GO:1903900"},{"relation_name":"regulates","term_name":"symbiont entry into host cell","termid":"GO:0046718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of viral entry into host cell","synonyms":[{"name":"regulation of viral penetration into host cell","type":"exact"},{"name":"viral escort protein","type":"related"}],"termid":"GO:0046596"}


id: GO:0046384
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 2-deoxyribose 1-phosphate, the phosphorylated sugar 1-phospho-2-deoxyribose.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphate-containing compound metabolic process","termid":"GO:0006796"},{"relation_name":"is_a","term_name":"organophosphate metabolic process","termid":"GO:0019637"},{"relation_name":"is_a","term_name":"carbohydrate derivative metabolic process","termid":"GO:1901135"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"2-deoxyribose 1-phosphate metabolic process","secondary_identifiers":["GO:0046388"],"synonyms":[{"name":"2-deoxyribose 1-phosphate metabolism","type":"exact"},{"name":"deoxyribose 1-phosphate metabolic process","type":"exact"},{"name":"deoxyribose 1-phosphate metabolism","type":"exact"}],"termid":"GO:0046384"}


id: GO:0052335
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism effects a change in the structure or function of the symbiont cytoskeleton. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete modification by host of symbiont cytoskeleton (obsolete GO:0052335)","termid":"GO:0052335"}


id: FYPO:0004079
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which phosphorylation of serine at position 10 of histone H3 is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone phosphorylation during vegetative growth","termid":"FYPO:0002595"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal histone H3-S10 phosphorylation during vegetative growth","synonyms":[{"name":"normal histone H3 phosphorylation at S10 during vegetative growth","type":"exact"},{"name":"normal histone H3-S10 phosphorylation during mitotic cell cycle","type":"related"},{"name":"normal histone H3S10 phosphorylation during vegetative growth","type":"exact"}],"termid":"FYPO:0004079"}


id: GO:1905494
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of G-quadruplex DNA binding.","definition_xrefs":["GO_REF:0000059","GOC:TermGenie","PMID:26503245"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of G-quadruplex DNA binding (obsolete GO:1905494)","synonyms":[{"name":"down regulation of G quadruplex DNA binding","type":"exact"},{"name":"down regulation of G quartet DNA binding","type":"exact"},{"name":"down regulation of G-DNA binding","type":"exact"},{"name":"down regulation of G-quadruplex DNA binding","type":"exact"},{"name":"down regulation of G-quartet DNA binding","type":"exact"},{"name":"down regulation of quadruplex DNA binding","type":"exact"},{"name":"down regulation of tetraplex DNA binding","type":"exact"},{"name":"down-regulation of G quadruplex DNA binding","type":"exact"},{"name":"down-regulation of G quartet DNA binding","type":"exact"},{"name":"down-regulation of G-DNA binding","type":"exact"},{"name":"down-regulation of G-quadruplex DNA binding","type":"exact"},{"name":"down-regulation of G-quartet DNA binding","type":"exact"},{"name":"down-regulation of quadruplex DNA binding","type":"exact"},{"name":"down-regulation of tetraplex DNA binding","type":"exact"},{"name":"downregulation of G quadruplex DNA binding","type":"exact"},{"name":"downregulation of G quartet DNA binding","type":"exact"},{"name":"downregulation of G-DNA binding","type":"exact"},{"name":"downregulation of G-quadruplex DNA binding","type":"exact"},{"name":"downregulation of G-quartet DNA binding","type":"exact"},{"name":"downregulation of quadruplex DNA binding","type":"exact"},{"name":"downregulation of tetraplex DNA binding","type":"exact"},{"name":"inhibition of G quadruplex DNA binding","type":"narrow"},{"name":"inhibition of G quartet DNA binding","type":"narrow"},{"name":"inhibition of G-DNA binding","type":"narrow"},{"name":"inhibition of G-quadruplex DNA binding","type":"narrow"},{"name":"inhibition of G-quartet DNA binding","type":"narrow"},{"name":"inhibition of quadruplex DNA binding","type":"narrow"},{"name":"inhibition of tetraplex DNA binding","type":"narrow"},{"name":"negative regulation of G quadruplex DNA binding","type":"exact"},{"name":"negative regulation of G quartet DNA binding","type":"exact"},{"name":"negative regulation of G-DNA binding","type":"exact"},{"name":"negative regulation of G-quartet DNA binding","type":"exact"},{"name":"negative regulation of quadruplex DNA binding","type":"exact"},{"name":"negative regulation of tetraplex DNA binding","type":"exact"}],"termid":"GO:1905494"}


id: GO:0100034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates 4,6-pyruvylated galactose residue biosynthetic process.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of 4,6-pyruvylated galactose residue biosynthetic process by transcription from RNA polymerase II promoter (obsolete GO:0100034)","termid":"GO:0100034"}


id: PBO:0048405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GAS8 antisense RNA 1","termid":"PBO:0048405"}


id: MONDO:0016566
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Loiasis is a form of filariasis (see this term), caused by the parasitic worm Loa loa, endemic to the forest and savannah regions of Central and Western Africa. Loiasis may either be asymptomatic or manifest as a large, transient area of localized, non-erythematous subcutaneous edema (Calabar swellings), adult worm migration through the sub-conjunctiva (''African eye worm'') and pruritus. Generalized itching, hives, muscle pains, arthralgias, fatigue, and adult worms visibly migrating under the surface of the skin may be observed. Severe complications such as encephalopathy have been reported in highly infected individuals receiving ivermectin during mass drug administration programs for the control of onchocerciasis and lymphatic filariasis.","definition_xrefs":["Orphanet:2404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"filariasis","termid":"MONDO:0016075"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"loiasis","secondary_identifiers":["DOID:13523","EFO:1000729","ICD9:125.2","MedDRA:10024797","MEDGEN:6132","NCIT:C34784","GARD:3283","SCTID:44250009","icd11.foundation:709184369","ICD10CM:B74.3","UMLS:C0023968","MESH:D008118"],"synonyms":[{"name":"African eye worm","type":"related"},{"name":"Loa loa filariasis","type":"related"}],"termid":"MONDO:0016566","xrefs":{"Monarch":{"xref_id":"0016566"}}}


id: GO:1904980
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of endosome organization.","definition_xrefs":["GO_REF:0000058","GOC:PARL","GOC:TermGenie","PMID:22511594","GOC:pad"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organelle organization","termid":"GO:0010638"},{"relation_name":"is_a","term_name":"regulation of endosome organization","termid":"GO:1904978"},{"relation_name":"positively_regulates","term_name":"endosome organization","termid":"GO:0007032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of endosome organization","synonyms":[{"name":"activation of endosome organisation","type":"narrow"},{"name":"activation of endosome organization","type":"narrow"},{"name":"activation of endosome organization and biogenesis","type":"related"},{"name":"positive regulation of endosome organisation","type":"exact"},{"name":"positive regulation of endosome organization and biogenesis","type":"related"},{"name":"up regulation of endosome organisation","type":"exact"},{"name":"up regulation of endosome organization","type":"exact"},{"name":"up regulation of endosome organization and biogenesis","type":"related"},{"name":"up-regulation of endosome organisation","type":"exact"},{"name":"up-regulation of endosome organization","type":"exact"},{"name":"up-regulation of endosome organization and biogenesis","type":"related"},{"name":"upregulation of endosome organisation","type":"exact"},{"name":"upregulation of endosome organization","type":"exact"},{"name":"upregulation of endosome organization and biogenesis","type":"related"}],"termid":"GO:1904980"}


id: PBO:0040277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATOSB pseudogene 1","termid":"PBO:0040277"}


id: PBO:0087793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO-ligase and SUMO-targeted metalloprotease; involved in DNA repair; removes DNA-protein crosslinks at stalled replication forks during replication of damaged DNA; clears chromatin-bound sumoylated proteins; localizes to single spot on nuclear periphery of mother cells but not daughters; exhibits vacuolar localization upon genotoxic stress; activated by DNA binding; member of minigluzincins protease family with mammalian DVC1/Spartan","termid":"PBO:0087793"}


id: GO:0042072
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete cell adhesion receptor inhibitor activity (obsolete GO:0042072)","synonyms":[{"name":"cell adhesion receptor inhibitor activity","type":"exact"}],"termid":"GO:0042072"}


id: MONDO:0019780
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital malformation of the external ear and the most extreme form of microtia characterized by the complete absence of the external ear and auditory canal, conductive hearing loss, attention deficit disorders and delayed language development.","definition_xrefs":["Orphanet:93976"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"},{"relation_name":"is_a","term_name":"otorhinolaryngologic disease","termid":"MONDO:0024623"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anotia","secondary_identifiers":["ICD9:744.01","icd11.foundation:2056675356","MEDGEN:152377","GARD:16835","MedDRA:10002654","SCTID:57436000","UMLS:C0702139"],"termid":"MONDO:0019780","xrefs":{"Monarch":{"xref_id":"0019780"}}}


id: PR:P53695
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An exonuclease 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR11081:SF8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exodeoxyribonuclease 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A10.05","secondary_identifiers":["UniProtKB:P53695"],"synonyms":[{"name":"EXO I (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPBC29A10.05","type":"related"},{"name":"Spom972h-EXO1","type":"exact"},{"name":"exodeoxyribonuclease I (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"exonuclease I (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P53695"}


id: PBO:0046106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4B pseudogene 9","termid":"PBO:0046106"}


id: MOD:02010
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue amino group with a stearoylamino group.","direct_ancestors":[{"relation_name":"is_a","term_name":"N-acylated residue","termid":"MOD:00670"},{"relation_name":"is_a","term_name":"stearoylated residue","termid":"MOD:02001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:01155"],"is_obsolete":false,"name":"N-stearoylated residue","termid":"MOD:02010"}


id: PBO:0065562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostaglandin E synthase 3 pseudogene 2","termid":"PBO:0065562"}


id: PBO:0031692
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_nuclear_transport","termid":"PBO:0031692"}


id: GO:0019842
data:
  {"annotated_genes":["SJAG_00673","SJAG_04031","SJAG_03985","SJAG_04842","SJAG_03434","SJAG_00186","SJAG_00706","SJAG_00830","SJAG_02464","SJAG_03743","SJAG_00495","SJAG_00869","SJAG_03055","SJAG_02734","SJAG_01019","SJAG_00714","SJAG_02791","SJAG_03861","SJAG_03961","SJAG_04149","SJAG_04178","SJAG_03102","SJAG_03306","SJAG_04678","SJAG_03671","SJAG_02972","SJAG_03914","SJAG_03362","SJAG_01766","SJAG_04145","SJAG_05230","SJAG_04988","SJAG_03312","SJAG_02205","SJAG_02305","SJAG_00582","SJAG_00937","SJAG_00432","SJAG_00097"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[66154,59794],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031177"},{"annotations":[81178,81465,64618,69569,69615,62561,112428,67867,67641,72420,76066,70566,75225,60833,57482,66981,80283,65849,67907,66742,70362,71778,58669,58318,66514,76312,74348,69078,66927,73965],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030170"},{"annotations":[68666],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030975"},{"annotations":[57851,59525,75128,62662,59090,65723],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030976"}]},"cv_name":"molecular_function","definition":"Binding to a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small molecule binding","termid":"GO:0036094"}],"gene_count":39,"genes_by_uniquename":{"SJAG_00097":null,"SJAG_00186":null,"SJAG_00432":null,"SJAG_00495":null,"SJAG_00582":null,"SJAG_00673":null,"SJAG_00706":null,"SJAG_00714":null,"SJAG_00830":null,"SJAG_00869":null,"SJAG_00937":null,"SJAG_01019":null,"SJAG_01766":null,"SJAG_02205":null,"SJAG_02305":null,"SJAG_02464":null,"SJAG_02734":null,"SJAG_02791":null,"SJAG_02972":null,"SJAG_03055":null,"SJAG_03102":null,"SJAG_03306":null,"SJAG_03312":null,"SJAG_03362":null,"SJAG_03434":null,"SJAG_03671":null,"SJAG_03743":null,"SJAG_03861":null,"SJAG_03914":null,"SJAG_03961":null,"SJAG_03985":null,"SJAG_04031":null,"SJAG_04145":null,"SJAG_04149":null,"SJAG_04178":null,"SJAG_04678":null,"SJAG_04842":null,"SJAG_04988":null,"SJAG_05230":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"vitamin binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0019842","terms_by_termid":{"GO:0030170":null,"GO:0030975":null,"GO:0030976":null,"GO:0031177":null}}


id: SO:0001080
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A coiled coil is a structural motif in proteins, in which alpha-helices are coiled together like the strands of a rope.","definition_xrefs":["UniProt:curation_manual","EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_structural_motif","termid":"SO:0001079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"coiled_coil","secondary_identifiers":["BS:00041","http://en.wikipedia.org/wiki/Coiled_coil"],"synonyms":[{"name":"coiled","type":"related"},{"name":"coiled coil","type":"exact"}],"termid":"SO:0001080"}


id: PR:O74949
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC553.12c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C553.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC553.12c","synonyms":[{"name":"Spom972h-SPCC553.12c","type":"exact"}],"termid":"PR:O74949"}


id: FYPO:0002989
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more transmembrane transport messenger RNAs measured in a cell is higher than normal (i.e. higher than observed in wild-type cells).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of transport gene mRNA during vegetative growth","termid":"FYPO:0004490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased level of transmembrane transport gene mRNA during vegetative growth","synonyms":[{"name":"increased level of transmembrane transport gene RNA during vegetative growth","type":"exact"},{"name":"increased level of transmembrane transport gene mRNA during mitotic cell cycle","type":"related"},{"name":"increased level of transmembrane transport gene transcripts during vegetative growth","type":"exact"},{"name":"increased mRNA level of genes involved in transmembrane transport during vegetative growth","type":"exact"},{"name":"increased mRNA level of transmembrane transport genes during vegetative growth","type":"exact"},{"name":"increased transmembrane transport gene mRNA accumulation during vegetative growth","type":"related"}],"termid":"FYPO:0002989"}


id: PBO:0027555
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_meiosis_II","termid":"PBO:0027555"}


id: GO:0030126
data:
  {"annotated_genes":["SJAG_00192","SJAG_02234","SJAG_04474","SJAG_04569","SJAG_02482","SJAG_04002","SJAG_04070","SJAG_04391","SJAG_01508"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[65472,72758,75527,79903,80213,81770,95174,100400,109094],"is_not":false,"summary":null,"term":"GO:0030126"}]},"cv_name":"cellular_component","definition":"One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state.","definition_xrefs":["PMID:11252894","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle coat","termid":"GO:0030120"},{"relation_name":"part_of","term_name":"Golgi apparatus","termid":"GO:0005794"},{"relation_name":"part_of","term_name":"COPI-coated vesicle membrane","termid":"GO:0030663"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00192":null,"SJAG_01508":null,"SJAG_02234":null,"SJAG_02482":null,"SJAG_04002":null,"SJAG_04070":null,"SJAG_04391":null,"SJAG_04474":null,"SJAG_04569":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0031410","GO:0005737","GO:0032991","GO:0005794","GO:0005575"],"is_obsolete":false,"name":"COPI vesicle coat","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0017167"],"synonyms":[{"name":"coatomer","type":"exact"}],"termid":"GO:0030126","terms_by_termid":{"GO:0030126":null}}


id: PBO:0084546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the Puf family of RNA-binding proteins; interacts with mRNAs encoding membrane-associated proteins; involved in localizing the Arp2/3 complex to mitochondria; overexpression causes increased sensitivity to benomyl; JSN1 has a paralog, PUF2, that arose from the whole genome duplication","termid":"PBO:0084546"}


id: SO:0000898
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is epigenetically modified.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"epigenetically_modified","termid":"SO:0000133"},{"relation_name":"is_a","term_name":"gene","termid":"SO:0000704"},{"relation_name":"is_a","term_name":"epigenetically_modified_region","termid":"SO:0001720"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epigenetically_modified_gene","synonyms":[{"name":"epigenetically modified gene","type":"exact"}],"termid":"SO:0000898"}


id: GO:0102821
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: bixin + S-adenosyl-L-methionine = bixin dimethyl ester + S-adenosyl-L-homocysteine.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete bixin methyltransferase activity (obsolete GO:0102821)","termid":"GO:0102821"}


id: PBO:0050621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxysteroid 17-beta dehydrogenase 13","termid":"PBO:0050621"}


id: PBO:0079824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unc-51 like kinase 3","termid":"PBO:0079824"}


id: MONDO:0005856
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections with viruses of the order mononegavirales. The concept includes filoviridae infections; paramyxoviridae infections; and rhabdoviridae infections.","definition_xrefs":["MESH:D018701"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary viral infectious disease","termid":"MONDO:0100329"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mononegavirales infectious disease","secondary_identifiers":["UMLS:C0242916","MEDGEN:67005"],"synonyms":[{"name":"Mononegavirales caused disease or disorder","type":"exact"},{"name":"Mononegavirales disease or disorder","type":"exact"}],"termid":"MONDO:0005856","xrefs":{"Monarch":{"xref_id":"0005856"}}}


id: GO:0019567
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of arabinose, arabino-pentose.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentose biosynthetic process","termid":"GO:0019322"},{"relation_name":"is_a","term_name":"arabinose metabolic process","termid":"GO:0019566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"arabinose biosynthetic process","synonyms":[{"name":"arabinose anabolism","type":"exact"},{"name":"arabinose biosynthesis","type":"exact"},{"name":"arabinose formation","type":"exact"},{"name":"arabinose synthesis","type":"exact"}],"termid":"GO:0019567"}


id: PBO:0080908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma","termid":"PBO:0080908"}


id: GO:0034228
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of ethanolamine from one side of a membrane to the other. Ethanolamine (2-aminoethanol, monoethanolamine) is an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids, such as phosphatidylethanolamine.","definition_xrefs":["PMID:3514579","GOC:rn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amine transmembrane transporter activity","termid":"GO:0005275"},{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"alcohol transmembrane transporter activity","termid":"GO:0015665"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"ethanolamine transmembrane transporter activity","secondary_identifiers":["MetaCyc:TRANS-RXN0-476"],"synonyms":[{"name":"2-aminoethanol transmembrane transporter activity","type":"exact"},{"name":"ethanolamine permease activity","type":"exact"},{"name":"monoethanolamine transmembrane transporter activity","type":"exact"}],"termid":"GO:0034228"}


id: GO:0004009
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete ATP-binding cassette (ABC) transporter activity (obsolete GO:0004009)","synonyms":[{"name":"ATP-binding cassette (ABC) transporter activity","type":"exact"}],"termid":"GO:0004009"}


id: GO:0042556
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Modulates the activity of the enzyme eukaryotic elongation factor-2 kinase.","definition_xrefs":["GOC:jl","PMID:11904175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein kinase regulator activity","termid":"GO:0019887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"}],"interesting_parent_ids":["GO:0098772","GO:0003674","GO:0030234"],"is_obsolete":false,"name":"eukaryotic elongation factor-2 kinase regulator activity","synonyms":[{"name":"eEF-2 kinase regulator","type":"exact"}],"termid":"GO:0042556"}


id: PBO:0042077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCDC144A N-terminal pseudogene","termid":"PBO:0042077"}


id: PBO:0083759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential helicase component of heterohexameric MCM2-7 complexes; MCM2-7 complexes bind pre-replication complexes on DNA and melt DNA prior to replication; forms an Mcm4p-6p-7p subcomplex; shows nuclear accumulation in G1; homolog of S. pombe Cdc21p","termid":"PBO:0083759"}


id: GO:0009971
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the anastral spindle in male meiotic cells.","definition_xrefs":["PMID:11973272","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle assembly involved in male meiosis","termid":"GO:0007053"},{"relation_name":"is_a","term_name":"anastral spindle assembly","termid":"GO:0055048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0000226"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0007049","GO:0000226","GO:0007010","GO:0140013"],"is_obsolete":false,"name":"anastral spindle assembly involved in male meiosis","termid":"GO:0009971"}


id: PBO:0052367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 15","termid":"PBO:0052367"}


id: PBO:0080785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XK related, Y-linked pseudogene 5","termid":"PBO:0080785"}


id: PATO:0000648
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A morphological quality inhering in a bearer by virtue of the bearer's being blocked or filled with obstacles or an obstacle.","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"closed","termid":"PATO:0000608"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"obstructed","termid":"PATO:0000648"}


id: PBO:0068114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 421","termid":"PBO:0068114"}


id: MONDO:0014104
data:
  {"annotated_genes":["SJAG_01945"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86919],"is_not":false,"summary":null,"term":"MONDO:0014104"}]},"cv_name":"mondo","definition":"Any dysequilibrium syndrome in which the cause of the disease is a mutation in the ATP8A2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebellar ataxia, intellectual disability, and dysequilibrium","termid":"MONDO:0009133"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01945":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0006025"],"is_obsolete":false,"name":"cerebellar ataxia, intellectual disability, and dysequilibrium syndrome 4","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:15930","DOID:0070559","OMIM:615268","UMLS:C3808977","MEDGEN:815307"],"synonyms":[{"name":"ATP8A2 dysequilibrium syndrome","type":"exact"},{"name":"CAMRQ4","type":"related"},{"name":"cerebellar ataxia and intellectual disability with or without quadrupedal locomotion 4","type":"related"},{"name":"cerebellar ataxia and mental retardation with or without quadrupedal locomotion 4","type":"related"},{"name":"cerebellar ataxia, intellectual disability, and dysequilibrium syndrome 4","type":"exact"},{"name":"cerebellar ataxia, intellectual disability, and dysequilibrium syndrome type 4","type":"exact"},{"name":"cerebellar ataxia, mental retardation, and dysequilibrium syndrome 4","type":"exact"},{"name":"cerebellar ataxia, mental retardation, and dysequilibrium syndrome type 4","type":"exact"},{"name":"dysequilibrium syndrome caused by mutation in ATP8A2","type":"exact"}],"termid":"MONDO:0014104","terms_by_termid":{"MONDO:0014104":null},"xrefs":{"Monarch":{"xref_id":"0014104"}}}


id: GO:0140570
data:
  {"annotated_genes":["SJAG_04203"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76576],"is_not":false,"summary":null,"term":"GO:0140570"}]},"cv_name":"biological_process","definition":"The removal of a mislocalized protein from the mitochondrial outer membrane.","definition_xrefs":["PMID:32973005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extraction of mislocalized protein from membrane","termid":"GO:0140568"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04203":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"extraction of mislocalized protein from mitochondrial outer membrane","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"extraction of mislocalized protein from outer mitochondrion membrane","type":"exact"}],"termid":"GO:0140570","terms_by_termid":{"GO:0140570":null}}


id: GO:0060804
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals generated as a consequence of any member of the BMP (bone morphogenetic protein) family binding to a cell surface receptor that results in an increase in the rate, frequency or extent of a Wnt signaling pathway.","definition_xrefs":["GOC:tb","GOC:dph","GOC:sdb_2009"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of Wnt signaling pathway by BMP signaling pathway (obsolete GO:0060804)","synonyms":[{"name":"positive regulation of WNT receptor signaling pathway by BMP signaling pathway","type":"exact"},{"name":"positive regulation of WNT receptor signalling pathway by BMP signalling pathway","type":"exact"},{"name":"positive regulation of Wnt-activated signaling pathway by BMP signaling pathway","type":"exact"}],"termid":"GO:0060804"}


id: PBO:0054285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1676","termid":"PBO:0054285"}


id: GO:0019360
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of nicotinamide nucleotide from other compounds, including niacinamide.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nicotinamide metabolic process","termid":"GO:0006769"},{"relation_name":"is_a","term_name":"nicotinamide nucleotide biosynthetic process","termid":"GO:0019359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"nicotinamide nucleotide biosynthetic process from niacinamide","synonyms":[{"name":"nicotinamide nucleotide anabolism from niacinamide","type":"exact"},{"name":"nicotinamide nucleotide formation from niacinamide","type":"exact"},{"name":"nicotinamide nucleotide synthesis from niacinamide","type":"exact"}],"termid":"GO:0019360"}


id: GO:0030011
data:
  {"annotated_genes":["SJAG_03718","SJAG_01722","SJAG_00355"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72280,73342,75197],"is_not":false,"summary":null,"term":"GO:0030011"}]},"cv_name":"biological_process","definition":"The maintenance of established anisotropic intracellular organization or cell growth patterns.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment or maintenance of cell polarity","termid":"GO:0007163"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00355":null,"SJAG_01722":null,"SJAG_03718":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007163","GO:0008150"],"is_obsolete":false,"name":"maintenance of cell polarity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["GO:0030013","GO:0030469"],"termid":"GO:0030011","terms_by_termid":{"GO:0030011":null}}


id: GO:1900020
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein kinase C activity.","definition_xrefs":["GOC:signaling","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein serine/threonine kinase activity","termid":"GO:0071902"},{"relation_name":"is_a","term_name":"regulation of protein kinase C activity","termid":"GO:1900019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein kinase C activity","synonyms":[{"name":"positive regulation of PKC","type":"related"},{"name":"positive regulation of PKC activity","type":"exact"},{"name":"up regulation of PKC","type":"related"},{"name":"up regulation of PKC activity","type":"exact"}],"termid":"GO:1900020"}


id: PBO:0067364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 464, pseudogene","termid":"PBO:0067364"}


id: PBO:0059828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial transcription termination factor 2","termid":"PBO:0059828"}


id: PBO:0113462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the GET complex; involved in insertion of tail-anchored proteins into the ER membrane; required for the retrieval of HDEL proteins from the Golgi to the ER in an ERD2 dependent fashion and for normal mitochondrial morphology and inheritance; Get1p and Get2p form an aqueous channel for protein translocation and insertion into the membrane","termid":"PBO:0113462"}


id: MONDO:0012717
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary hypomagnesemia in which the cause of the disease is a mutation in the EGF gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial primary hypomagnesemia with normocalciuria and normocalcemia","termid":"MONDO:0018101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005240"],"is_obsolete":false,"name":"renal hypomagnesemia 4","secondary_identifiers":["OMIM:611718","MEDGEN:388692","DOID:0060882","MESH:C567127","UMLS:C2673648"],"synonyms":[{"name":"EGF familial primary hypomagnesemia","type":"exact"},{"name":"EGF primary hypomagnesemia","type":"exact"},{"name":"HOMG4","type":"exact"},{"name":"familial primary hypomagnesemia caused by mutation in EGF","type":"exact"},{"name":"hypomagnesemia 4, renal","type":"related"},{"name":"hypomagnesemia, renal, Normocalciuric","type":"related"},{"name":"primary hypomagnesemia caused by mutation in EGF","type":"exact"},{"name":"renal hypomagnesemia type 4","type":"exact"}],"termid":"MONDO:0012717","xrefs":{"Monarch":{"xref_id":"0012717"}}}


id: PBO:0004235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine decarboxylase complex subunit H (predicted)","termid":"PBO:0004235"}


id: GO:0043115
data:
  {"annotated_genes":["SJAG_01786"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78812],"is_not":false,"summary":null,"term":"GO:0043115"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD+ + precorrin-2 = 2 H+ + NADH + sirohydrochlorin.","definition_xrefs":["EC:1.3.1.76","RHEA:15613"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01786":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"precorrin-2 dehydrogenase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["KEGG_REACTION:R03947","MetaCyc:DIMETHUROPORDEHYDROG-RXN"],"synonyms":[{"name":"1,3-dimethyluroporphyrinogen III dehydrogenase activity","type":"exact"},{"name":"CysG","type":"related"},{"name":"Met8p","type":"related"},{"name":"SirC","type":"related"},{"name":"dihydrosirohydrochlorin dehydrogenase activity","type":"exact"},{"name":"precorrin-2 oxidase activity","type":"related"},{"name":"precorrin-2:NAD+ oxidoreductase activity","type":"related"},{"name":"siroheme synthase activity","type":"broad"}],"termid":"GO:0043115","terms_by_termid":{"GO:0043115":null}}


id: PBO:0079989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 27","termid":"PBO:0079989"}


id: MONDO:0025271
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infection in cattle caused by various species of trypanosomes.","definition_xrefs":["MESH:D014354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cattle disease","termid":"MONDO:0024913"},{"relation_name":"is_a","term_name":"trypanosomiasis, non-human animal","termid":"MONDO:0700213"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trypanosomiasis, bovine","synonyms":[{"name":"Trypanosomiases, bovine","type":"related"},{"name":"bovine Trypanosomiases","type":"related"},{"name":"bovine trypanosomiasis","type":"related"}],"termid":"MONDO:0025271","xrefs":{"Monarch":{"xref_id":"0025271"}}}


id: GO:0019636
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving phosphonoacetate, C2H4PO5, a substance composed of an acetate and a phosphonic acid residue.","definition_xrefs":["MetaCyc:P483-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorus metabolic process","termid":"GO:0006793"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"phosphonoacetate metabolic process","synonyms":[{"name":"phosphonoacetate metabolism","type":"exact"}],"termid":"GO:0019636"}


id: PBO:0003337
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.1.3.36","termid":"PBO:0003337"}


id: MONDO:0044925
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma arising in the oral cavity. Most oral cavity carcinomas are squamous cell carcinomas of the tongue, buccal mucosa, or gums. Less frequent morphologic variants include mucoepidermoid carcinoma and adenocarcinoma.","definition_xrefs":["NCIT:C8990"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oral cavity cancer","termid":"MONDO:0005515"},{"relation_name":"is_a","term_name":"digestive system carcinoma","termid":"MONDO:0006181"},{"relation_name":"is_a","term_name":"lip and oral cavity carcinoma","termid":"MONDO:0023644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"oral cavity carcinoma","secondary_identifiers":["MEDGEN:57468","UMLS:C0151546"],"synonyms":[{"name":"carcinoma of mouth","type":"exact"},{"name":"carcinoma of oral cavity","type":"exact"},{"name":"carcinoma of the oral cavity","type":"exact"},{"name":"mouth carcinoma","type":"exact"},{"name":"oral cavity cancer","type":"broad"},{"name":"oral cavity carcinoma","type":"exact"}],"termid":"MONDO:0044925","xrefs":{"Monarch":{"xref_id":"0044925"}}}


id: GO:0061956
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The infiltration by sperm of the cumulus oophorus to reach the oocyte. The process involves digestive enzymes from a modified lysosome called the acrosome, situated at the head of the sperm.","definition_xrefs":["PMID:21380641"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"},{"relation_name":"part_of","term_name":"single fertilization","termid":"GO:0007338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"penetration of cumulus oophorus","synonyms":[{"name":"penetration of cumulus cells layer","type":"exact"},{"name":"penetration of cumulus mass","type":"exact"}],"termid":"GO:0061956"}


id: GO:0120537
data:
  {"annotated_genes":["SJAG_04642"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[116869],"is_not":false,"summary":null,"term":"GO:0120537"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 3-demethylubiquinone + S-adenosyl-L-methionine = a ubiquinone + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:81215","PMID:38425362"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04642":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016741"],"is_obsolete":false,"name":"3-demethylubiquinone 3-O-methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0120537","terms_by_termid":{"GO:0120537":null}}


