# terms

id: PATO:0000238
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000238 relative odor_acuity (obsolete PATO:0000238)","termid":"PATO:0000238"}


id: GO:0032980
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in the morphology or behavior of a keratinocyte resulting from exposure to an activating factor such as a cellular or soluble ligand. Upon activation, keratinocytes become migratory and hyperproliferative, and produce growth factors and cytokines.","definition_xrefs":["PMID:15737202","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell activation","termid":"GO:0001775"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"keratinocyte activation","termid":"GO:0032980"}


id: MONDO:0032617
data:
  {"annotated_genes":["SJAG_03782"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88164],"is_not":false,"summary":null,"term":"MONDO:0032617"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex I deficiency, nuclear type","termid":"MONDO:0100223"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03782":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial complex 1 deficiency, nuclear type 11","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0112089","UMLS:C4748769","GARD:16321","OMIM:618234","MEDGEN:1648356"],"synonyms":[{"name":"MC1DN11","type":"related"},{"name":"MITOCHONDRIAL COMPLEX I DEFICIENCY, NUCLEAR TYPE 11","type":"related"}],"termid":"MONDO:0032617","terms_by_termid":{"MONDO:0032617":null},"xrefs":{"Monarch":{"xref_id":"0032617"}}}


id: GO:0047073
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,4'-dihydroxyacetophenone + O2 = 4-hydroxybenzoate + formate + 2 H+.","definition_xrefs":["RHEA:24416","EC:1.13.11.41"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"2,4'-dihydroxyacetophenone dioxygenase activity","secondary_identifiers":["MetaCyc:1.13.11.41-RXN","UM-BBD_reactionID:r1410","KEGG_REACTION:R01305"],"synonyms":[{"name":"(4-hydroxybenzoyl)methanol oxygenase activity","type":"related"},{"name":"2,4'-dihydroxyacetophenone oxidoreductase (C-C-bond-cleaving)","type":"related"}],"termid":"GO:0047073"}


id: PBO:0091136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial complex assembly factor, LYR family Fmc1","termid":"PBO:0091136"}


id: PBO:0027773
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_4-amino-1-methyl-1H-imidazole-5-carboselenoamide","termid":"PBO:0027773"}


id: PBO:0039283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALG1 like 12, pseudogene","termid":"PBO:0039283"}


id: PBO:0050907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon induced with helicase C domain 1","termid":"PBO:0050907"}


id: SO:0002228
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant extending the CDS at the 5' end, that causes elongation of the resulting polypeptide sequence at the N terminus.","definition_xrefs":["PMID:15864293","PMID:31216041","PMID:14732127","PMID:32020195","PMID:27984720"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CDS_extension","termid":"SO:0002227"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDS_five_prime_extension","synonyms":[{"name":"CDS Extension 5 prime","type":"exact"},{"name":"CDS Extension five prime","type":"exact"},{"name":"elongated CDS five prime","type":"exact"},{"name":"elongated_CDS_five_prime","type":"exact"}],"termid":"SO:0002228"}


id: PBO:0078854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRPC6 pseudogene 2","termid":"PBO:0078854"}


id: GO:0046162
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving heme c, a derivative of heme found in cytochromes c, b4, and f.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heme metabolic process","termid":"GO:0042168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"heme C metabolic process","synonyms":[{"name":"haem C metabolic process","type":"exact"},{"name":"haem C metabolism","type":"exact"},{"name":"heme C metabolism","type":"exact"}],"termid":"GO:0046162"}


id: PBO:0075725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRM pseudogene 1","termid":"PBO:0075725"}


id: GO:0140398
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalyzes the reaction: versicolorin B + NADPH + O2 = versicolorin A + NADP+ + 2 H2O. Uses heme-thiolate as a co-factor. Involved in the synthesis of aflatoxins in the fungus Aspergillus parasiticus.","definition_xrefs":["PMID:15006741","PMID:8368837"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"versicolorin B desaturase activity","secondary_identifiers":["MetaCyc:RXN-9495","EC:1.14.19.n5","KEGG_REACTION:R10479","RHEA:35743"],"termid":"GO:0140398"}


id: PBO:0004381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJ protein Xdj1 (predicted)","termid":"PBO:0004381"}


id: PBO:0043002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitinase acidic","termid":"PBO:0043002"}


id: GO:0035295
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a tube over time, from its initial formation to a mature structure. Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts.","definition_xrefs":["PMID:12526790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"multicellular organism development","termid":"GO:0007275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tube development","termid":"GO:0035295"}


id: MONDO:0004425
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Overactivity of the thyroid gland resulting in overproduction of thyroid hormone and increased metabolic rate. Causes include diffuse hyperplasia of the thyroid gland (Graves' disease), single nodule in the thyroid gland, and thyroiditis. The symptoms are related to the increased metabolic rate and include weight loss, fatigue, heat intolerance, excessive sweating, diarrhea, tachycardia, insomnia, muscle weakness, and tremor.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thyroid gland disorder","termid":"MONDO:0003240"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperthyroidism","secondary_identifiers":["MESH:D006980","SCTID:34486009","UMLS:C0020550","NANDO:2100119","EFO:0009189","NANDO:2200329","DOID:7998","ICD9:242.90","MEDGEN:6972","NCIT:C3123"],"synonyms":[{"name":"overactive thyroid","type":"exact"}],"termid":"MONDO:0004425","xrefs":{"Monarch":{"xref_id":"0004425"}}}


id: PBO:0072852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretion associated Ras related GTPase 1A pseudogene 2","termid":"PBO:0072852"}


id: PBO:0004024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO deconjugating enzyme Ulp1","termid":"PBO:0004024"}


id: PBO:0025536
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argininosuccinic aciduria","termid":"PBO:0025536"}


id: GO:1901768
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of carbapenem.","definition_xrefs":["GOC:TermGenie","GOC:yaf","PMID:9402024"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-lactam antibiotic catabolic process","termid":"GO:0030655"},{"relation_name":"is_a","term_name":"carbapenem metabolic process","termid":"GO:1901767"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"carbapenem catabolic process","synonyms":[{"name":"carbapenem breakdown","type":"exact"},{"name":"carbapenem catabolism","type":"exact"},{"name":"carbapenem degradation","type":"exact"}],"termid":"GO:1901768"}


id: GO:0052884
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + all-trans-retinyl palmitate = 11-cis-retinol + H+ + palmitate.","definition_xrefs":["RHEA:31775"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinyl-palmitate esterase activity","termid":"GO:0050253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016788","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"all-trans-retinyl-palmitate hydrolase, 11-cis retinol forming activity","secondary_identifiers":["Reactome:R-HSA-2453833"],"synonyms":[{"name":"all-trans-retinol isomerase:hydrolase activity","type":"broad"},{"name":"all-trans-retinyl-palmitate hydrolase activity","type":"broad"},{"name":"retinoid isomerohydrolase activity","type":"broad"},{"name":"retinol isomerase activity","type":"broad"}],"termid":"GO:0052884"}


id: MONDO:0017605
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete ependymal tumor (obsolete MONDO:0017605)","termid":"MONDO:0017605","xrefs":{"Monarch":{"xref_id":"0017605"}}}


id: GO:1905461
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vascular associated smooth muscle cell apoptotic process.","definition_xrefs":["PMID:26493107","GOC:TermGenie","GOC:rph","GOC:BHF_miRNA","GO_REF:0000058","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of smooth muscle cell apoptotic process","termid":"GO:0034393"},{"relation_name":"is_a","term_name":"regulation of vascular associated smooth muscle cell apoptotic process","termid":"GO:1905459"},{"relation_name":"positively_regulates","term_name":"vascular associated smooth muscle cell apoptotic process","termid":"GO:1905288"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vascular associated smooth muscle cell apoptotic process","synonyms":[{"name":"activation of VSMC apoptosis","type":"narrow"},{"name":"activation of VSMC apoptotic process","type":"narrow"},{"name":"activation of vascular associated smooth muscle cell apoptosis","type":"narrow"},{"name":"activation of vascular associated smooth muscle cell apoptotic process","type":"narrow"},{"name":"activation of vascular smooth muscle cell apoptosis","type":"narrow"},{"name":"activation of vascular smooth muscle cell apoptotic process","type":"narrow"},{"name":"positive regulation of VSMC apoptosis","type":"narrow"},{"name":"positive regulation of VSMC apoptotic process","type":"exact"},{"name":"positive regulation of vascular associated smooth muscle cell apoptosis","type":"narrow"},{"name":"positive regulation of vascular smooth muscle cell apoptosis","type":"narrow"},{"name":"positive regulation of vascular smooth muscle cell apoptotic process","type":"exact"},{"name":"up regulation of VSMC apoptosis","type":"narrow"},{"name":"up regulation of VSMC apoptotic process","type":"exact"},{"name":"up regulation of vascular associated smooth muscle cell apoptosis","type":"narrow"},{"name":"up regulation of vascular associated smooth muscle cell apoptotic process","type":"exact"},{"name":"up regulation of vascular smooth muscle cell apoptosis","type":"narrow"},{"name":"up regulation of vascular smooth muscle cell apoptotic process","type":"exact"},{"name":"up-regulation of VSMC apoptosis","type":"narrow"},{"name":"up-regulation of VSMC apoptotic process","type":"exact"},{"name":"up-regulation of vascular associated smooth muscle cell apoptosis","type":"narrow"},{"name":"up-regulation of vascular associated smooth muscle cell apoptotic process","type":"exact"},{"name":"up-regulation of vascular smooth muscle cell apoptosis","type":"narrow"},{"name":"up-regulation of vascular smooth muscle cell apoptotic process","type":"exact"},{"name":"upregulation of VSMC apoptosis","type":"narrow"},{"name":"upregulation of VSMC apoptotic process","type":"exact"},{"name":"upregulation of vascular associated smooth muscle cell apoptosis","type":"narrow"},{"name":"upregulation of vascular associated smooth muscle cell apoptotic process","type":"exact"},{"name":"upregulation of vascular smooth muscle cell apoptosis","type":"narrow"},{"name":"upregulation of vascular smooth muscle cell apoptotic process","type":"exact"}],"termid":"GO:1905461"}


id: GO:0099086
data:
  {"annotated_genes":["SJAG_05333","SJAG_02490","SJAG_04748","SJAG_03438","SJAG_00172","SJAG_03843","SJAG_04303","SJAG_02652","SJAG_07002"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[111626,113117,111534,117536,92280,93416,106841,91004,96699],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030998"}]},"cv_name":"cellular_component","definition":"A proteinaceous scaffold found between homologous chromosomes during meiosis.","definition_xrefs":["GOC:elh","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"condensed nuclear chromosome","termid":"GO:0000794"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00172":null,"SJAG_02490":null,"SJAG_02652":null,"SJAG_03438":null,"SJAG_03843":null,"SJAG_04303":null,"SJAG_04748":null,"SJAG_05333":null,"SJAG_07002":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0005694"],"is_obsolete":false,"name":"synaptonemal structure","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0099086","terms_by_termid":{"GO:0030998":null}}


id: FYPO:0006092
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized more towards the end of the cell, with fewer patches in the lateral cortex, than normal.","definition_xrefs":["PMID:20705471","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized actin cortical patches during vegetative growth","termid":"FYPO:0003988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0004803","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"polarized actin cortical patch localization during vegetative growth","synonyms":[{"name":"polarised actin cortical patch localisation during vegetative growth","type":"exact"},{"name":"polarized F-actin patch localization during vegetative growth","type":"exact"},{"name":"polarized actin cortical patch localization during mitotic cell cycle","type":"related"},{"name":"polarized actin cortical patch location during vegetative growth","type":"related"},{"name":"polarized actin patch localization during vegetative growth","type":"exact"}],"termid":"FYPO:0006092"}


id: GO:0062011
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contributes to and regulates mitochondrial respiratory chain complex IV (COX) formation. It acts by regulating mitochondrial COX1 translation and by promoting the assembly of COX components.","definition_xrefs":["GOC:lnp","PMID:21068384"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inner mitochondrial membrane protein complex","termid":"GO:0098800"},{"relation_name":"is_a","term_name":"protein folding chaperone complex","termid":"GO:0101031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005739","GO:0032991","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"mitochondrial respiratory chain complex IV pre-assembly complex","synonyms":[{"name":"COX pre-assemply complex","type":"broad"},{"name":"COX1 preassemply complex","type":"exact"}],"termid":"GO:0062011"}


id: GO:0141051
data:
  {"annotated_genes":["SJAG_00581","SJAG_04186","SJAG_03627"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[111458],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140937"},{"annotations":[99163,111459],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034739"},{"annotations":[79232],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046970"},{"annotations":[111460],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180032"},{"annotations":[111461],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180033"}]},"cv_name":"molecular_function","definition":"Removal of an acetyl group from a lysine residue in a histone H4.","definition_xrefs":["PMID:12590135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone deacetylase activity","termid":"GO:0004407"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00581":null,"SJAG_03627":null,"SJAG_04186":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0033558"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0019213"}],"interesting_parent_ids":["GO:0003824","GO:0033558","GO:0003674","GO:0140096","GO:0019213"],"is_obsolete":false,"name":"histone H4K deacetylase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0141051","terms_by_termid":{"GO:0034739":null,"GO:0046970":null,"GO:0140937":null,"GO:0180032":null,"GO:0180033":null}}


id: PBO:0071405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 11","termid":"PBO:0071405"}


id: MONDO:0010093
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndesmodysplasic dwarfism","secondary_identifiers":["OMIM:272450","UMLS:C2931647","Orphanet:2654","MEDGEN:419461","MESH:C537869"],"synonyms":[{"name":"syndesmodysplasic dwarfism","type":"exact"}],"termid":"MONDO:0010093","xrefs":{"Monarch":{"xref_id":"0010093"}}}


id: GO:0017185
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The hydroxylation of peptidyl-lysine to form peptidyl-hydroxylysine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein hydroxylation","termid":"GO:0018126"},{"relation_name":"is_a","term_name":"peptidyl-lysine modification","termid":"GO:0018205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-lysine hydroxylation","termid":"GO:0017185"}


id: FYPO:0006257
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle phenotype in which the duration of prophase of mitosis normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic cell cycle phase","termid":"FYPO:0002740"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal duration of mitotic prophase","synonyms":[{"name":"normal duration of mitotic prophase during vegetative growth","type":"exact"},{"name":"normal duration of prophase during mitotic cell cycle","type":"exact"},{"name":"normal duration of prophase of mitosis","type":"exact"}],"termid":"FYPO:0006257"}


id: GO:1904755
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of gut granule assembly.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:17535251"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle assembly","termid":"GO:1902115"},{"relation_name":"regulates","term_name":"gut granule assembly","termid":"GO:1902900"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of gut granule assembly","synonyms":[{"name":"regulation of gut granule biogenesis","type":"exact"},{"name":"regulation of gut granule formation","type":"exact"}],"termid":"GO:1904755"}


id: PBO:0082242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha subunit of cytoplasmic phenylalanyl-tRNA synthetase; forms a tetramer with Frs1p to form active enzyme; evolutionarily distant from mitochondrial phenylalanyl-tRNA synthetase based on protein sequence, but substrate binding is similar","termid":"PBO:0082242"}


id: PBO:0003626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-glucan synthesis-associated protein (predicted)","termid":"PBO:0003626"}


id: GO:0047652
data:
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id: GO:0044877
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id: PATO:0000147
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id: MONDO:0020247
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id: GO:0098899
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id: PBO:0071352
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id: FYPO:0001660
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id: PBO:0002090
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id: GO:0032994
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id: GO:2000423
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of eosinophil chemotaxis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of granulocyte chemotaxis","termid":"GO:0071623"},{"relation_name":"is_a","term_name":"negative regulation of eosinophil migration","termid":"GO:2000417"},{"relation_name":"is_a","term_name":"regulation of eosinophil chemotaxis","termid":"GO:2000422"},{"relation_name":"negatively_regulates","term_name":"eosinophil chemotaxis","termid":"GO:0048245"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of eosinophil chemotaxis","termid":"GO:2000423"}


id: GO:0001830
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id: PBO:0028510
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id: PBO:0028758
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id: MONDO:0001690
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id: MONDO:0012438
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id: PBO:0053601
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id: PBO:0017614
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id: PBO:0113049
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id: MOD:01859
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id: PR:Q9UU85
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ppk38 gene.","definition_xrefs":["UniProtKB:Q9UU85","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase domain-containing protein ppk38 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCP1E11.02","synonyms":[{"name":"Spom972h-ppk38","type":"exact"}],"termid":"PR:Q9UU85"}


id: GO:0035511
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Removal of the methyl group from one or more nucleotides within a DNA molecule involving the oxidation (i.e. electron loss) of one or more atoms.","definition_xrefs":["PMID:18775698","PMID:12594517","PMID:16482161"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidative DNA demethylation (obsolete GO:0035511)","termid":"GO:0035511"}


id: MONDO:0006196
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A high grade, aggressive adenocarcinoma arising from the endometrium. It is characterized by the presence of complex papillary patterns with cellular budding. Atypical mitoses, necrosis, and psammoma bodies may be present. It is classified as type II endometrial carcinoma and it is not associated with endometrial hyperplasia. It tends to invade deeply into the myometrium and spreads into the lymphatic vessels. Patients frequently present with spread of the tumor beyond the uterus at the time of diagnosis. The prognosis is usually poor.","definition_xrefs":["NCIT:C27838"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uterine carcinoma","termid":"MONDO:0005213"},{"relation_name":"is_a","term_name":"serous adenocarcinoma","termid":"MONDO:0005278"},{"relation_name":"is_a","term_name":"uterine corpus cancer","termid":"MONDO:0006003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"endometrial serous adenocarcinoma","secondary_identifiers":["ONCOTREE:USC","EFO:1000238","icd11.foundation:225222541","MEDGEN:1659908","UMLS:C0854924","DOID:5750"],"synonyms":[{"name":"body of uterus serous adenocarcinoma","type":"exact"},{"name":"endometrial serous adenocarcinoma","type":"exact"},{"name":"serous endometrial adenocarcinoma","type":"exact"},{"name":"uterine corpus serous adenocarcinoma","type":"exact"},{"name":"uterine papillary serous carcinoma","type":"exact"},{"name":"uterine serous adenocarcinoma","type":"broad"},{"name":"uterine serous carcinoma","type":"broad"},{"name":"uterine serous carcinoma/uterine papillary serous carcinoma","type":"related"},{"name":"uterine serous papillary adenocarcinoma","type":"exact"}],"termid":"MONDO:0006196","xrefs":{"Monarch":{"xref_id":"0006196"}}}


id: PBO:0038820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase domain 23","termid":"PBO:0038820"}


id: MONDO:0043327
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Discharge of cerebrospinal fluid through a hole through the skull bone most commonly draining from the nose (CEREBROSPINAL FLUID RHINORRHEA) or the ear (CEREBROSPINAL FLUID OTORRHEA).","definition_xrefs":["MESH:D065634"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system disorder","termid":"MONDO:0002602"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebrospinal fluid leak","secondary_identifiers":["ICD10CM:G96.0","SCTID:230744007","MEDGEN:9695","UMLS:C0023182"],"synonyms":[{"name":"CSF leak","type":"related"},{"name":"CSF otorrhea","type":"related"},{"name":"CSF rhinorrhea","type":"related"},{"name":"Drainages, cerebrospinal fluid","type":"related"},{"name":"Leakages, cerebrospinal fluid","type":"related"},{"name":"Leaks, cerebrospinal fluid","type":"related"},{"name":"cerebrospinal fluid Drainages","type":"related"},{"name":"cerebrospinal fluid Leakages","type":"related"},{"name":"cerebrospinal fluid Leaks","type":"related"},{"name":"cerebrospinal fluid drainage","type":"related"},{"name":"cerebrospinal fluid drainage, post traumatic","type":"related"},{"name":"cerebrospinal fluid drainage, post-traumatic","type":"related"},{"name":"cerebrospinal fluid drainage, spontaneous","type":"related"},{"name":"cerebrospinal fluid drainage, traumatic","type":"related"},{"name":"cerebrospinal fluid leak","type":"exact"},{"name":"cerebrospinal fluid leak, post traumatic","type":"related"},{"name":"cerebrospinal fluid leak, post-traumatic","type":"related"},{"name":"cerebrospinal fluid leak, spontaneous","type":"related"},{"name":"cerebrospinal fluid leak, traumatic","type":"related"},{"name":"cerebrospinal fluid leakage","type":"related"},{"name":"cerebrospinal fluid leakage, post traumatic","type":"related"},{"name":"cerebrospinal fluid leakage, post-traumatic","type":"related"},{"name":"cerebrospinal fluid leakage, spontaneous","type":"related"},{"name":"cerebrospinal fluid leakage, traumatic","type":"related"},{"name":"csf - cerebrospinal fluid leak","type":"related"},{"name":"drainage, cerebrospinal fluid","type":"related"},{"name":"fluid Drainages, cerebrospinal","type":"related"},{"name":"fluid Leakages, cerebrospinal","type":"related"},{"name":"fluid Leaks, cerebrospinal","type":"related"},{"name":"fluid drainage, cerebrospinal","type":"related"},{"name":"fluid leak, cerebrospinal","type":"related"},{"name":"fluid leakage, cerebrospinal","type":"related"},{"name":"leak, cerebrospinal fluid","type":"related"},{"name":"leakage, cerebrospinal fluid","type":"related"},{"name":"spinal CSF leak","type":"related"},{"name":"spinal cerebrospinal fluid leak","type":"related"},{"name":"spinal cerebrospinal fluid leak, post traumatic","type":"related"},{"name":"spinal cerebrospinal fluid leak, post-traumatic","type":"related"},{"name":"spinal cerebrospinal fluid leak, spontaneous","type":"related"},{"name":"spinal cerebrospinal fluid leak, traumatic","type":"related"}],"termid":"MONDO:0043327","xrefs":{"Monarch":{"xref_id":"0043327"}}}


id: GO:0009138
data:
  {"annotated_genes":["SJAG_00885","SJAG_04665","SJAG_04657","SJAG_03676","SJAG_00779","SJAG_02874"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[82301],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046705"},{"annotations":[94384,109226],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046704"},{"annotations":[94385,97439,109227],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006240"},{"annotations":[72931],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006233"},{"annotations":[72930],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006227"},{"annotations":[82300],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006225"},{"annotations":[78342],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006256"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving pyrimidine nucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside diphosphate metabolic process","termid":"GO:0009132"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00779":null,"SJAG_00885":null,"SJAG_02874":null,"SJAG_03676":null,"SJAG_04657":null,"SJAG_04665":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"pyrimidine nucleoside diphosphate metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine nucleoside diphosphate metabolism","type":"exact"}],"termid":"GO:0009138","terms_by_termid":{"GO:0006225":null,"GO:0006227":null,"GO:0006233":null,"GO:0006240":null,"GO:0006256":null,"GO:0046704":null,"GO:0046705":null}}


id: MONDO:0009320
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hall-Riggs syndrome is a very rare syndrome consisting of microcephaly with facial dysmorphism, spondylometaepiphyseal dysplasia and severe intellectual deficit.","definition_xrefs":["Orphanet:2107"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hall-Riggs syndrome","secondary_identifiers":["UMLS:C1856198","SCTID:721008000","OMIM:234250","MESH:C535623","MEDGEN:341089","GARD:2586"],"synonyms":[{"name":"HALL-Riggs intellectual disability syndrome","type":"related"},{"name":"HALL-Riggs mental retardation syndrome","type":"related"},{"name":"Hall Riggs intellectual disability syndrome","type":"related"},{"name":"Hall Riggs mental retardation syndrome","type":"related"}],"termid":"MONDO:0009320","xrefs":{"Monarch":{"xref_id":"0009320"}}}


id: PBO:0039570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 65","termid":"PBO:0039570"}


id: GO:0000933
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cell septum whose formation is independent of nuclear division.","definition_xrefs":["GOC:clt","ISBN:0471940526"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell septum","termid":"GO:0030428"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"adventitious septum","termid":"GO:0000933"}


id: PBO:0079060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Val (anticodon TAC) 1-1","termid":"PBO:0079060"}


id: GO:0036058
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a filtration diaphragm, a specialized cell-cell junction found between the cells of the excretory system, which provides a barrier for filtration of blood or hemolymph.","definition_xrefs":["PMID:18971929","GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell junction assembly","termid":"GO:0007043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"filtration diaphragm assembly","termid":"GO:0036058"}


id: PBO:0056099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LY6/PLAUR domain containing 4","termid":"PBO:0056099"}


id: PBO:0044813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 108B","termid":"PBO:0044813"}


id: PBO:0067807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 109","termid":"PBO:0067807"}


id: PBO:0002396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial splicing suppressor Mss51 (predicted)","termid":"PBO:0002396"}


id: PBO:0091647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane amino acid transmembrane transporter Aat1","termid":"PBO:0091647"}


id: PBO:0075360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SOX1 overlapping transcript","termid":"PBO:0075360"}


id: GO:0031468
data:
  {"annotated_genes":["SJAG_03891","SJAG_03783","SJAG_00900","SJAG_01467","SJAG_04489","SJAG_01050","SJAG_03892","SJAG_01242","SJAG_00416","SJAG_01745","SJAG_05207"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74003],"is_not":false,"summary":null,"term":"GO:0031468"},{"annotations":[102850,99906,108532,121272,121274,93291,97914,105101,121273,121275],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007084"}]},"cv_name":"biological_process","definition":"The reformation of the nuclear membranes following their breakdown in the context of a normal process.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane assembly","termid":"GO:0071709"},{"relation_name":"is_a","term_name":"nuclear membrane organization","termid":"GO:0071763"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00416":null,"SJAG_00900":null,"SJAG_01050":null,"SJAG_01242":null,"SJAG_01467":null,"SJAG_01745":null,"SJAG_03783":null,"SJAG_03891":null,"SJAG_03892":null,"SJAG_04489":null,"SJAG_05207":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0044085","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"nuclear membrane reassembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:32243490":null},"synonyms":[{"name":"nuclear envelope reassembly","type":"related"}],"termid":"GO:0031468","terms_by_termid":{"GO:0007084":null,"GO:0031468":null}}


id: MONDO:0012923
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any congenital generalized lipodystrophy in which the cause of the disease is a mutation in the CAV1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital generalized lipodystrophy","termid":"MONDO:0006536"},{"relation_name":"is_a","term_name":"Berardinelli-Seip congenital lipodystrophy","termid":"MONDO:0018883"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005066"],"is_obsolete":false,"name":"congenital generalized lipodystrophy type 3","secondary_identifiers":["DOID:0111137","GARD:13389","OMIM:612526","UMLS:C2675861","MEDGEN:436541","MESH:C567282"],"synonyms":[{"name":"BSCL3","type":"exact"},{"name":"Berardinelli-Seip congenital lipodystrophy type 3","type":"exact"},{"name":"Berardinelli-Seip congenital lipodystrophy, type 3","type":"related"},{"name":"CAV1 congenital generalised lipodystrophy (disease)","type":"exact"},{"name":"CAV1 congenital generalized lipodystrophy (disease)","type":"exact"},{"name":"CGL3","type":"exact"},{"name":"congenital generalised lipodystrophy (disease) caused by mutation in CAV1","type":"exact"},{"name":"congenital generalized lipodystrophy (disease) caused by mutation in CAV1","type":"exact"},{"name":"lipodystrophy, Berardinelli-Seip congenital, type 3","type":"related"},{"name":"lipodystrophy, congenital generalized, type 3","type":"related"},{"name":"type 3 Berardinelli-Seip congenital lipodystrophy","type":"related"}],"termid":"MONDO:0012923","xrefs":{"Monarch":{"xref_id":"0012923"}}}


id: GO:0042620
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving poly(3-hydroxyalkanoates), polyesters of 3-hydroxyacids produced as intracellular granules by a large variety of bacteria.","definition_xrefs":["PMID:9925580","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"poly(3-hydroxyalkanoate) metabolic process","synonyms":[{"name":"PHA metabolic process","type":"broad"},{"name":"PHA metabolism","type":"broad"},{"name":"poly(3-hydroxyalkanoate) metabolism","type":"exact"}],"termid":"GO:0042620"}


id: GO:0102936
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: UDP-alpha-D-glucose + gypsogenate = gypsogenate-28-beta-D-glucoside + UDP.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete gypsogenate-UDP-glucosyltransferase activity (obsolete GO:0102936)","termid":"GO:0102936"}


id: PBO:0058209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4501","termid":"PBO:0058209"}


id: PBO:0042618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatin licensing and DNA replication factor 1","termid":"PBO:0042618"}


id: PBO:0088294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial DNA polymerase, zeta catalytic subunit Rev3","termid":"PBO:0088294"}


id: GO:0100052
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates G1/S transition of mitotic cell cycle.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of G1/S transition of mitotic cell cycle by transcription from RNA polymerase II promoter (obsolete GO:0100052)","termid":"GO:0100052"}


id: GO:0005344
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to oxygen and delivering it to an acceptor molecule or a specific location.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular carrier activity","termid":"GO:0140104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140104"}],"interesting_parent_ids":["GO:0003674","GO:0140104"],"is_obsolete":false,"name":"oxygen carrier activity","secondary_identifiers":["GO:0015033"],"synonyms":[{"name":"globin","type":"narrow"},{"name":"hemerythrin","type":"narrow"},{"name":"hemocyanin","type":"narrow"},{"name":"oxygen-carrying","type":"narrow"}],"termid":"GO:0005344"}


id: MONDO:0012042
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Hirschsprung disease, susceptibility to","termid":"MONDO:0100179"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hirschsprung disease, susceptibility to, 8","secondary_identifiers":["OMIM:608462","MEDGEN:409841","UMLS:C1969482"],"synonyms":[{"name":"HSCR8","type":"exact"},{"name":"Hirschsprung disease, susceptibility to, 8","type":"exact"}],"termid":"MONDO:0012042","xrefs":{"Monarch":{"xref_id":"0012042"}}}


id: PBO:0031590
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cellular_process","termid":"PBO:0031590"}


id: MONDO:0017299
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"acute annular outer retinopathy","secondary_identifiers":["UMLS:C5191002","GARD:21121","MEDGEN:1684428","Orphanet:284460"],"synonyms":[{"name":"AAOR","type":"exact"}],"termid":"MONDO:0017299","xrefs":{"Monarch":{"xref_id":"0017299"}}}


id: PBO:0073729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stem-loop binding protein","termid":"PBO:0073729"}


id: GO:0061715
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The posttranscriptional addition of a methyl group to the 2' oxygen atom of a nucleotide residue in an miRNA molecule.","definition_xrefs":["GOC:BHF","GOC:BHF_miRNA","GOC:rph","PMID:20705645"],"gene_count":0,"genotype_count":0,"name":"obsolete miRNA 2'-O-methylation (obsolete GO:0061715)","termid":"GO:0061715"}


id: PBO:0073393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET domain containing 7, histone lysine methyltransferase","termid":"PBO:0073393"}


id: FYPO:0004626
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is inviable, is elongated, is curved along the long axis, and contains one nucleus. In a curved cell, the long axis follows a smooth bend rather than a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable curved elongated vegetative cell","termid":"FYPO:0002411"},{"relation_name":"is_a","term_name":"inviable elongated mononucleate vegetative cell","termid":"FYPO:0004255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000004","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"inviable curved elongated mononucleate vegetative cell","synonyms":[{"name":"inviable curved elongated mononucleate cell during vegetative growth","type":"exact"},{"name":"inviable curved elongated mononucleate vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal; curved elongated mononucleate vegetative cell","type":"exact"}],"termid":"FYPO:0004626"}


id: MONDO:0005948
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Ritter disease (obsolete MONDO:0005948)","termid":"MONDO:0005948","xrefs":{"Monarch":{"xref_id":"0005948"}}}


id: PBO:0072599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"remodeling and spacing factor 1","termid":"PBO:0072599"}


id: PBO:0073680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sirtuin 2","termid":"PBO:0073680"}


id: MONDO:0010762
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Hodgkins lymphoma","termid":"MONDO:0004952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"lymphoma, Hodgkin, Y-linked pseudoautosomal","secondary_identifiers":["OMIM:400021","MEDGEN:333246","MESH:C564034","UMLS:C1839076"],"synonyms":[{"name":"Hodgkin disease, Y-linked Pseudoautosomal","type":"related"},{"name":"lymphoma, Hodgkin, Y-linked pseudoautosomal","type":"exact"}],"termid":"MONDO:0010762","xrefs":{"Monarch":{"xref_id":"0010762"}}}


id: GO:0017098
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a sulfonylurea receptor, a regulatory subunit of the ATP-sensitive potassium ion channel.","definition_xrefs":["GOC:ceb","PMID:11938023"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"sulfonylurea receptor binding","synonyms":[{"name":"sulfonylurea receptor ligand","type":"narrow"},{"name":"sulphonylurea receptor binding","type":"exact"}],"termid":"GO:0017098"}


id: GO:0045728
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A phase of elevated metabolic activity, during which oxygen consumption increases, that occurs in neutrophils, monocytes, and macrophages shortly after phagocytosing material. An enhanced uptake of oxygen leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals, which play a part in microbiocidal activity.","definition_xrefs":["GOC:curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory burst involved in defense response","termid":"GO:0002679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"respiratory burst after phagocytosis","synonyms":[{"name":"metabolic burst after phagocytosis","type":"exact"},{"name":"oxidative burst after phagocytosis","type":"exact"}],"termid":"GO:0045728"}


id: PBO:0054734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2143","termid":"PBO:0054734"}


id: GO:0070063
data:
  {"annotated_genes":["SJAG_02203","SJAG_02898","SJAG_00448","SJAG_03118","SJAG_01610","SJAG_01151","SJAG_00139","SJAG_00809","SJAG_04933","SJAG_04353","SJAG_02037","SJAG_00483","SJAG_01744"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79668],"is_not":false,"summary":null,"term":"GO:0070063"},{"annotations":[68833],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043175"},{"annotations":[73426],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001042"},{"annotations":[66563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099122"},{"annotations":[80075,74415],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990269"},{"annotations":[72985,74187,80518,78151,80529,57814],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000993"},{"annotations":[75678],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000994"}]},"cv_name":"molecular_function","definition":"Binding to an RNA polymerase molecule or complex.","definition_xrefs":["GOC:txnOH","GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme binding","termid":"GO:0019899"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00139":null,"SJAG_00448":null,"SJAG_00483":null,"SJAG_00809":null,"SJAG_01151":null,"SJAG_01610":null,"SJAG_01744":null,"SJAG_02037":null,"SJAG_02203":null,"SJAG_02898":null,"SJAG_03118":null,"SJAG_04353":null,"SJAG_04933":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"RNA polymerase binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"termid":"GO:0070063","terms_by_termid":{"GO:0000993":null,"GO:0000994":null,"GO:0001042":null,"GO:0043175":null,"GO:0070063":null,"GO:0099122":null,"GO:1990269":null}}


id: PBO:0086022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; null mutant displays reduced frequency of mitochondrial genome loss","termid":"PBO:0086022"}


id: PR:P36611
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- php3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P36611"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional activator hap3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23C11.08","synonyms":[{"name":"Spom972h-php3","type":"exact"}],"termid":"PR:P36611"}


id: FYPO:0002076
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a cell is elongated, has a nucleus that is broken into multiple small fragments, forms a septum that is thicker than normal, and is inviable.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"increased septum thickness","termid":"FYPO:0001406"},{"relation_name":"has_part","term_name":"fragmented nucleus during vegetative growth","termid":"FYPO:0001919"},{"relation_name":"is_a","term_name":"increased septum thickness","termid":"FYPO:0001406"},{"relation_name":"is_a","term_name":"inviable elongated vegetative cell with abnormal septum","termid":"FYPO:0002889"},{"relation_name":"is_a","term_name":"inviable elongated vegetative cell with fragmented nucleus","termid":"FYPO:0004672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"has_part","termid":"FYPO:0002403"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000032","FYPO:0000002","FYPO:0002403","FYPO:0000631","FYPO:0000005","FYPO:0005447","FYPO:0000004","FYPO:0001985"],"is_obsolete":false,"name":"inviable elongated cell with fragmented nucleus and increased septum thickness","synonyms":[{"name":"elongated inviable cell with fragmented nuclear material and increased septum thickness","type":"exact"},{"name":"elongated inviable cell with fragmented nuclei and increased septum thickness","type":"exact"},{"name":"elongated inviable cell with fragmented nucleus and increased septum thickness","type":"exact"},{"name":"elongated inviable cell with fragmented nucleus and increased septum thickness during vegetative growth","type":"exact"},{"name":"inviable elongated cell with fragmented nuclear DNA and increased septum thickness","type":"related"},{"name":"inviable elongated cell with fragmented nucleus and increased septum thickness during mitotic cell cycle","type":"related"},{"name":"lethal; elongated cell with fragmented nucleus and increased septum thickness","type":"exact"},{"name":"long inviable cell with fragmented nucleus and increased septum thickness","type":"exact"}],"termid":"FYPO:0002076"}


id: GO:0097511
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A branched cellular projection (or cytoplasmic extension) that is extended from the surface of a dendritic immune cell, and which enables the cell to sample luminal pathogens and increase the surface area for antigen presentation to T cells.","definition_xrefs":["GOC:BHF","PMID:12200351","GOC:cjm","CL:0000451"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection","termid":"GO:0120025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"dendritic cell dendrite","termid":"GO:0097511"}


id: PBO:0113269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phospholipid hydroperoxide glutathione peroxidase; late-acting antioxidant system that decreases mitochondrial ROS production and preserves electron transport chain (ETC) function; protects cells from phospholipid hydroperoxides and nonphospholipid peroxides during oxidative stress; induced by glucose starvation; protein abundance increases in response to DNA replication stress","termid":"PBO:0113269"}


id: GO:0019055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Interactions, directly with the host cell macromolecular machinery, to allow a virus to modulate the rate of the host cell cycle to facilitate virus replication.","definition_xrefs":["ISBN:0781718325","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete perturbation by virus of host cell cycle regulation (obsolete GO:0019055)","synonyms":[{"name":"modification by virus of host cell cycle regulation","type":"exact"},{"name":"viral perturbation of cell cycle regulation","type":"exact"}],"termid":"GO:0019055"}


id: PBO:0055207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2632","termid":"PBO:0055207"}


id: GO:0071113
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell adhesion molecule ICAM-4.","definition_xrefs":["PMID:12477717"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"alphaIIb-beta3 integrin-ICAM-4 complex","synonyms":[{"name":"ITGAIIb-ITGB3-ICAM4 complex","type":"narrow"}],"termid":"GO:0071113"}


id: PBO:0086554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YGL149W is not an essential gene","termid":"PBO:0086554"}


id: PBO:0072160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 37","termid":"PBO:0072160"}


id: MONDO:0016622
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Melhem-Fahl syndrome was described in two siblings born to consanguineous parents in 1985 and was characterized by the presence of 15 dorsal vertebrae and rib pairs. No other cases have been documented since the initial report.","definition_xrefs":["Orphanet:2482"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Melhem-Fahl syndrome","secondary_identifiers":["MEDGEN:444059","GARD:3462","SCTID:732263008","UMLS:C2931453","MESH:C537238","icd11.foundation:999539082"],"synonyms":[{"name":"Melhem Fahl syndrome","type":"related"},{"name":"fifteen dorsal vertebrae and rib pairs","type":"related"}],"termid":"MONDO:0016622","xrefs":{"Monarch":{"xref_id":"0016622"}}}


id: PR:O14235
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pof5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein pof5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F6.02c","synonyms":[{"name":"Spom972h-pof5","type":"exact"}],"termid":"PR:O14235"}


id: PBO:0074604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 11E","termid":"PBO:0074604"}


id: PBO:0087446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit I of cytochrome c oxidase (Complex IV); Complex IV is the terminal member of the mitochondrial inner membrane electron transport chain; one of three mitochondrially-encoded subunits; number of introns in different strains varies from 2 to 8, with most strains having 4-6 introns","termid":"PBO:0087446"}


id: GO:0071062
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphav-beta3 integrin complex bound to vitronectin.","definition_xrefs":["PMID:10835423"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"alphav-beta3 integrin-vitronectin complex","synonyms":[{"name":"ITGAV-ITGB3-VTN complex","type":"narrow"}],"termid":"GO:0071062"}


id: GO:0031001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brefeldin A stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to antibiotic","termid":"GO:0046677"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to brefeldin A","termid":"GO:0031001"}


id: GO:0160211
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any of the lipid bilayers that surround an apicoplast and form the apicoplast envelope.","definition_xrefs":["PMID:38865262","PMID:20124342"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid membrane","termid":"GO:0042170"},{"relation_name":"part_of","term_name":"apicoplast","termid":"GO:0020011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"apicoplast membrane","termid":"GO:0160211"}


id: PBO:0087375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ssh1p-Sss1p-Sbh2p complex component; involved in protein translocation into the endoplasmic reticulum; SBH2 has a paralog, SBH1, that arose from the whole genome duplication","termid":"PBO:0087375"}


id: MONDO:0001661
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An early stage of diabetic retinopathy that is characterized by retinal hemorrhage and exudate, but without proliferation of the blood vessels.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diabetic retinopathy","termid":"MONDO:0005266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005328"],"is_obsolete":false,"name":"background diabetic retinopathy","secondary_identifiers":["NCIT:C35668","SCTID:390834004","DOID:13208","MEDGEN:2531","UMLS:C0004606","ICD9:362.01","ICD9:362.03"],"synonyms":[{"name":"non proliferative diabetic retinopathy","type":"exact"},{"name":"non-proliferative diabetic retinopathy","type":"exact"}],"termid":"MONDO:0001661","xrefs":{"Monarch":{"xref_id":"0001661"}}}


id: PBO:0066735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 32","termid":"PBO:0066735"}


id: GO:1905602
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of receptor-mediated endocytosis involved in cholesterol transport.","definition_xrefs":["GOC:nc","GO_REF:0000058","GOC:BHF","GOC:TermGenie","PMID:22848640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of intracellular cholesterol transport","termid":"GO:0032385"},{"relation_name":"is_a","term_name":"positive regulation of receptor-mediated endocytosis","termid":"GO:0048260"},{"relation_name":"is_a","term_name":"regulation of receptor-mediated endocytosis involved in cholesterol transport","termid":"GO:1905600"},{"relation_name":"positively_regulates","term_name":"receptor-mediated endocytosis involved in cholesterol transport","termid":"GO:0090118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"positive regulation of receptor-mediated endocytosis involved in cholesterol transport","synonyms":[{"name":"activation of receptor-mediated endocytosis involved in cholesterol transport","type":"narrow"},{"name":"activation of receptor-mediated endocytosis involved in intracellular cholesterol transport","type":"related"},{"name":"activation of receptor-mediated endocytosis of LDL","type":"narrow"},{"name":"activation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"activation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport","type":"related"},{"name":"positive regulation of receptor-mediated endocytosis involved in intracellular cholesterol transport","type":"related"},{"name":"positive regulation of receptor-mediated endocytosis of LDL","type":"related"},{"name":"positive regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"positive regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport","type":"related"},{"name":"up regulation of receptor-mediated endocytosis involved in cholesterol transport","type":"exact"},{"name":"up regulation of receptor-mediated endocytosis involved in intracellular cholesterol transport","type":"related"},{"name":"up regulation of receptor-mediated endocytosis of LDL","type":"related"},{"name":"up regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"up regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport","type":"related"},{"name":"up-regulation of receptor-mediated endocytosis involved in cholesterol transport","type":"exact"},{"name":"up-regulation of receptor-mediated endocytosis involved in intracellular cholesterol transport","type":"related"},{"name":"up-regulation of receptor-mediated endocytosis of LDL","type":"related"},{"name":"up-regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"up-regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport","type":"related"},{"name":"upregulation of receptor-mediated endocytosis involved in cholesterol transport","type":"exact"},{"name":"upregulation of receptor-mediated endocytosis involved in intracellular cholesterol transport","type":"related"},{"name":"upregulation of receptor-mediated endocytosis of LDL","type":"related"},{"name":"upregulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"upregulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport","type":"related"}],"termid":"GO:1905602"}


id: PBO:0076861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 11","termid":"PBO:0076861"}


id: GO:0000414
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 36 of histone H3.","definition_xrefs":["GOC:krc"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of histone H3-K36 methylation (obsolete GO:0000414)","termid":"GO:0000414"}


id: PBO:0113126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential subunit of Dam1 complex (aka DASH complex); complex couples kinetochores to force produced by MT depolymerization thereby aiding in chromosome segregation; also localized to nuclear side of spindle pole body; SPC19 mRNA level is reduced when downstream gene RAV2 is deleted","termid":"PBO:0113126"}


id: GO:0047409
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: H2O + 1-(1-alkenyl)-sn-glycero-3-phosphoethanolamine = sn-glycero-3-phosphoethanolamine + an aldehyde.","definition_xrefs":["MetaCyc:3.3.2.5-RXN","EC:3.3.2.5"],"gene_count":0,"genotype_count":0,"name":"obsolete alkenylglycerophosphoethanolamine hydrolase activity (obsolete GO:0047409)","synonyms":[{"name":"1-(1-alkenyl)-sn-glycero-3-phosphoethanolamine aldehydohydrolase activity","type":"related"}],"termid":"GO:0047409"}


id: RO:0002200
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relationship that holds between a biological entity and a phenotype. Here a phenotype is construed broadly as any kind of quality of an organism part, a collection of these qualities, or a change in quality or qualities (e.g. abnormally increased temperature). The subject of this relationship can be an organism (where the organism has the phenotype, i.e. the qualities inhere in parts of this organism), a genomic entity such as a gene or genotype (if modifications of the gene or the genotype causes the phenotype), or a condition such as a disease (such that if the condition inheres in an organism, then the organism has the phenotype).","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_phenotype","termid":"RO:0002200"}


id: FYPO:0002639
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the distance between sister kinetochores is greater than normal before the onset of mitotic anaphase.","definition_xrefs":["PomBase:mah","PMID:22065639"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"output_of","term_name":"abnormal centromere localization","termid":"FYPO:0001778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased interkinetochore distance before mitotic anaphase","synonyms":[{"name":"increased distance between mitotic kinetochores","type":"related"},{"name":"increased interkinetochore distance before anaphase during mitotic cell cycle","type":"related"},{"name":"increased interkinetochore distance before anaphase onset","type":"exact"},{"name":"increased interkinetochore distance before mitotic anaphase during vegetative growth","type":"exact"},{"name":"increased kinetochore stretching before mitotic anaphase","type":"related"},{"name":"increased sister kinetochore distance before mitotic anaphase","type":"exact"}],"termid":"FYPO:0002639"}


id: GO:0052245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism on or near a second organism towards a lower level of a physical stimulus involved in energy generation, such as light, oxygen, and oxidizable substrates, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative energy taxis on or near other organism involved in symbiotic interaction (obsolete GO:0052245)","synonyms":[{"name":"negative energy taxis on or near other organism during symbiotic interaction","type":"related"}],"termid":"GO:0052245"}


id: PBO:0079809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP glycosyltransferase family 3 member A1","termid":"PBO:0079809"}


id: MONDO:0016689
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare variant of diffuse astrocytoma. It is characterized by the presence of a conspicuous, though variable, fraction of gemistocytic neoplastic astrocytes. Gemistocytes are round to oval astrocytes with abundant, glassy, non-fibrillary cytoplasm which appears to displace the dark, angulated nucleus to the periphery of the cell. To make the diagnosis of gemistocytic astrocytoma, gemistocytes should amount to more than approximately 20% of all tumor cells. (Adapted from WHO)","definition_xrefs":["NCIT:C4321"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diffuse astrocytoma","termid":"MONDO:0016686"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gemistocytic astrocytoma","secondary_identifiers":["ICDO:9411/3","GARD:20709","MEDGEN:87269","UMLS:C0334581","Orphanet:251604","DOID:7005"],"synonyms":[{"name":"Gemistocytoma","type":"exact"},{"name":"gemistocytic astrocytic tumor","type":"exact"},{"name":"gemistocytic astrocytic tumour","type":"exact"},{"name":"gemistocytic astrocytoma","type":"exact"},{"name":"gemistocytic astrocytoma (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0016689","xrefs":{"Monarch":{"xref_id":"0016689"}}}


id: PBO:0076688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor A like 5","termid":"PBO:0076688"}


id: MONDO:0002182
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by an individual's inability to comprehend or share ideas or feelings because of an impairment in language, speech, or hearing.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specific developmental disorder","termid":"MONDO:0000592"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"communication disorder","secondary_identifiers":["MEDGEN:3549","MESH:D003147","ICD9:307.9","NCIT:C2958","UMLS:C0009460","DOID:2033","SCTID:278919001"],"synonyms":[{"name":"communicative disorders","type":"exact"}],"termid":"MONDO:0002182","xrefs":{"Monarch":{"xref_id":"0002182"}}}


id: MONDO:0005274
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete MONDO:0005274 (obsolete MONDO:0005274)","termid":"MONDO:0005274","xrefs":{"Monarch":{"xref_id":"0005274"}}}


id: SO:0000764
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000764 BAC_clone (obsolete SO:0000764)","termid":"SO:0000764"}


id: MONDO:0000350
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Charcot-Marie-Tooth disease intermediate type (obsolete MONDO:0000350)","termid":"MONDO:0000350","xrefs":{"Monarch":{"xref_id":"0000350"}}}


id: SO:0001152
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A type VIa beta turn with the following phi and psi sngles on amino acid residues 2 and 3: phi-2 = -60 degrees, psi-2 = 120 degrees, phi-3 = -90 degrees, psi-3 = 0 degrees.","definition_xrefs":["PMID:27428516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta_turn_type_six_a","termid":"SO:0001151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"beta_turn_type_six_a_one","synonyms":[{"name":"beta turn type six a one","type":"exact"},{"name":"type VIa1 beta turn","type":"exact"},{"name":"type VIa1 turn","type":"exact"}],"termid":"SO:0001152"}


id: PBO:0068441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 15, pseudogene","termid":"PBO:0068441"}


id: GO:0051437
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates, maintains or increases the rate of ubiquitin ligase activity that contributes to the regulation of the mitotic cell cycle phase transition.","definition_xrefs":["GOC:ai","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition (obsolete GO:0051437)","synonyms":[{"name":"activation of ubiquitin ligase activity during mitotic cell cycle","type":"narrow"},{"name":"mitotic SCF complex activator","type":"narrow"},{"name":"mitotic ubiquitin ligase activator","type":"narrow"},{"name":"positive regulation of ubiquitin ligase activity during mitotic cell cycle","type":"related"},{"name":"positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle","type":"related"},{"name":"stimulation of ubiquitin ligase activity during mitotic cell cycle","type":"narrow"},{"name":"up regulation of ubiquitin ligase activity during mitotic cell cycle","type":"related"},{"name":"up-regulation of ubiquitin ligase activity during mitotic cell cycle","type":"related"},{"name":"upregulation of ubiquitin ligase activity during mitotic cell cycle","type":"related"}],"termid":"GO:0051437"}


id: PBO:0045123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin D binding myb like transcription factor 1","termid":"PBO:0045123"}


id: MONDO:0001877
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"male infertility","termid":"MONDO:0005372"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"infertility due to extratesticular cause","secondary_identifiers":["SCTID:84245004","ICD9:606.8","DOID:14096","MEDGEN:507846","UMLS:C0021360"],"synonyms":[{"name":"infertility due to extratesticular causes","type":"exact"}],"termid":"MONDO:0001877","xrefs":{"Monarch":{"xref_id":"0001877"}}}


id: MOD:01424
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively results from forming an adduct with a compound containing a quinaldate, kynurenate, or xanthurenate group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by chemical process","termid":"MOD:01156"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"quinaldate modified residue","termid":"MOD:01424"}


id: PBO:0090136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER protein disulfide isomerase Pdi2","termid":"PBO:0090136"}


id: PBO:0064254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology domain containing A3","termid":"PBO:0064254"}


id: GO:1901118
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cephamycin C.","definition_xrefs":["UniPathway:UPA00183","GOC:yaf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-lactam antibiotic biosynthetic process","termid":"GO:0030654"},{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"},{"relation_name":"is_a","term_name":"cephamycin C metabolic process","termid":"GO:1901116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006790","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"cephamycin C biosynthetic process","synonyms":[{"name":"cephamycin C anabolism","type":"exact"},{"name":"cephamycin C biosynthesis","type":"exact"},{"name":"cephamycin C formation","type":"exact"},{"name":"cephamycin C synthesis","type":"exact"}],"termid":"GO:1901118"}


id: PBO:0049196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate ionotropic receptor delta type subunit 2","termid":"PBO:0049196"}


id: PBO:0040361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase membrane subunit k","termid":"PBO:0040361"}


id: GO:0060241
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of lysozyme.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme inhibitor activity","termid":"GO:0004857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0098772","GO:0030234","GO:0003674","GO:0140678","GO:0004857"],"is_obsolete":false,"name":"lysozyme inhibitor activity","termid":"GO:0060241"}


id: PBO:0084866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the small subunit; genetic interactions suggest a possible role in promoting translation initiation","termid":"PBO:0084866"}


id: GO:0031352
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the plastid inner membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of plastid inner membrane (obsolete GO:0031352)","synonyms":[{"name":"intrinsic to plastid inner membrane","type":"narrow"}],"termid":"GO:0031352"}


id: PBO:0073797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 6 member 4","termid":"PBO:0073797"}


id: MONDO:0000162
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"Hashimoto thyroiditis","termid":"MONDO:0007699"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autoimmune thyroid disease, susceptibility to","termid":"MONDO:0000162","xrefs":{"Monarch":{"xref_id":"0000162"}}}


id: PBO:0030425
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-constricted_nucleus","termid":"PBO:0030425"}


id: PBO:0054086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1438","termid":"PBO:0054086"}


id: PBO:0054267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1653","termid":"PBO:0054267"}


id: GO:0016553
data:
  {"annotated_genes":["SJAG_04380","SJAG_04189","SJAG_00352"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75699,103070,59670],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0002100"}]},"cv_name":"biological_process","definition":"Any base modification or substitution events that result in alterations in the coding potential or structural properties of RNAs as a result of changes in the base-pairing properties of the modified ribonucleoside(s).","definition_xrefs":["PMID:11092837"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA modification","termid":"GO:0009451"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00352":null,"SJAG_04189":null,"SJAG_04380":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"base conversion or substitution editing","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"base conversion/substitution editing","type":"exact"}],"termid":"GO:0016553","terms_by_termid":{"GO:0002100":null}}


id: PBO:0081319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 101 pseudogene 2","termid":"PBO:0081319"}


id: PBO:0041797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caspase recruitment domain family member 6","termid":"PBO:0041797"}


id: GO:0015107
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of chlorate, ClO3-, from one side of a membrane to the other.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic anion transmembrane transporter activity","termid":"GO:0015103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"chlorate transmembrane transporter activity","termid":"GO:0015107"}


id: PBO:0017097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrestin family Schizosaccharomyces specific protein Mug170","termid":"PBO:0017097"}


id: PBO:0044943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydrodiol dehydrogenase","termid":"PBO:0044943"}


id: FYPO:0009108
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the spindle pole bodies (SPBs) of daughter nuclei are misoriented during mitotic telophase. Normally, SPBs face the cell tips at the end of anaphase when the spindle disassembles, but as microtubules are nucleated from SPBs and telophase nuclear positioning proceeds, the SPBs tend to face the cell equator.","definition_xrefs":["PMID:37099380"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular physical quality phenotype","termid":"FYPO:0000136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"name":"abnormal spindle pole body orientation during mitotic telophase","synonyms":[{"name":"abnormal spindle pole body angle during mitotic telophase","type":"exact"},{"name":"abnormal spindle pole body positioning within the nucleus during mitotic telophase","type":"exact"},{"name":"spindle pole body facing cell tips during mitotic telophase","type":"related"}],"termid":"FYPO:0009108"}


id: MONDO:0003964
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by non-neoplastic bone formation in soft tissues. It usually follows blunt trauma and bleeding in the deep soft tissues.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myositis disease","termid":"MONDO:0021167"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"myositis ossificans","secondary_identifiers":["UMLS:C0027122","icd11.foundation:635062595","MESH:D009221","NCIT:C3253","NANDO:1200871","MEDGEN:6503","DOID:668","NANDO:2201020"],"synonyms":[{"name":"FOP","type":"exact"},{"name":"Myisitis ossificans","type":"exact"},{"name":"fibrodysplasia ossificans progressiva","type":"related"},{"name":"myositis ossificans progressiva","type":"exact"},{"name":"ossification - muscle","type":"exact"},{"name":"progressive myositis ossificans","type":"narrow"},{"name":"progressive ossifying myositis","type":"narrow"}],"termid":"MONDO:0003964","xrefs":{"Monarch":{"xref_id":"0003964"}}}


id: MONDO:0017365
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Kindler syndrome","termid":"MONDO:0008260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"hereditary acrokeratotic poikiloderma, Weary type","secondary_identifiers":["UMLS:C0406556","GARD:18781","Orphanet:2907","icd11.foundation:837824031","MEDGEN:96059"],"synonyms":[{"name":"congenital poikiloderma with bullae, Weary type","type":"exact"}],"termid":"MONDO:0017365","xrefs":{"Monarch":{"xref_id":"0017365"}}}


id: PBO:0079371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin alpha pseudogene 6","termid":"PBO:0079371"}


id: PBO:0042341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD79a molecule","termid":"PBO:0042341"}


id: PBO:0026746
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_polyubiquitination_during_cellular_response_to_UV","termid":"PBO:0026746"}


id: GO:1990646
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prolactin stimulus.","definition_xrefs":["PMID:7760850"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to peptide hormone stimulus","termid":"GO:0071375"},{"relation_name":"is_a","term_name":"response to prolactin","termid":"GO:1990637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to prolactin","termid":"GO:1990646"}


id: FYPO:0002453
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which a cell undergoes one or a few rounds of cell division before cells die, resulting in the formation a colony that contains only a few inviable cells that have abnormal morphology (i.e. size, shape, or structure) and contain one or more septa apiece. Up to 6 rounds of cell division (generating 64 cells) may be observed, but 3 divisions or fewer is more typical.","definition_xrefs":["PomBase:mah","PomBase:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable microcolony, septated cells with abnormal morphology (obsolete FYPO:0002453)","synonyms":[{"name":"inviable microcolony, septated vegetative cells with abnormal morphology","type":"exact"}],"termid":"FYPO:0002453"}


id: GO:0035869
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A region of the cilium between the basal body and proximal segment that is characterized by Y-shaped assemblages that connect axonemal microtubules to the ciliary membrane. The ciliary transition zone appears to function as a gate that controls ciliary membrane composition and separates the cytosol from the ciliary plasm.","definition_xrefs":["GOC:kmv","GOC:cilia","PMID:21422230"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cilium","termid":"GO:0005929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"ciliary transition zone","synonyms":[{"name":"cilial transition zone","type":"exact"},{"name":"cilium transition zone","type":"exact"},{"name":"connecting cilium","type":"related"}],"termid":"GO:0035869"}


id: PR:Q10659
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- spo14 gene.","definition_xrefs":["UniProtKB:Q10659","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane glycoprotein spo14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3H7.01","synonyms":[{"name":"SEC12-like protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-spo14","type":"exact"},{"name":"sporulation-specific protein 14 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10659"}


id: FYPO:0001394
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which the activation of monopolar cell growth may occur at either the new or old end of the cell, instead of exclusively at the old end, following cell division. A population of cells with this phenotype has a 1:1 mix of cells initiating growth at the new end and cells initiating growth at the old end.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal activation of monopolar cell growth","termid":"FYPO:0001393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"activation of monopolar cell growth at either end","synonyms":[{"name":"abnormal initiation of growth from either old or new end following cell division","type":"exact"},{"name":"activation of monopolar vegetative cell growth at either end","type":"exact"}],"termid":"FYPO:0001394"}


id: PBO:0090591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial LYR family protein Lyr2","termid":"PBO:0090591"}


id: PBO:0061397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NPPA antisense RNA 1","termid":"PBO:0061397"}


id: PBO:0088740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exomer complex ChAPs family (Chs5p-Arf1p-binding) protein Bch1","termid":"PBO:0088740"}


id: MONDO:0016036
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Ledderhose disease (obsolete MONDO:0016036)","termid":"MONDO:0016036","xrefs":{"Monarch":{"xref_id":"0016036"}}}


id: PBO:0120439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AAA ATPase AFG2B","termid":"PBO:0120439"}


id: MONDO:0019163
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pseudoxanthoma elasticum (obsolete MONDO:0019163)","termid":"MONDO:0019163","xrefs":{"Monarch":{"xref_id":"0019163"}}}


id: GO:1905860
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of heparan sulfate proteoglycan binding.","definition_xrefs":["GO_REF:0000059","GOC:bc","GOC:TermGenie","GOC:aruk","PMID:7683668"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of heparan sulfate proteoglycan binding (obsolete GO:1905860)","synonyms":[{"name":"activation of heparan sulfate proteoglycan binding","type":"narrow"},{"name":"activation of heparin proteoglycan binding","type":"related"},{"name":"positive regulation of heparin proteoglycan binding","type":"related"},{"name":"up regulation of heparan sulfate proteoglycan binding","type":"exact"},{"name":"up regulation of heparin proteoglycan binding","type":"related"},{"name":"up-regulation of heparan sulfate proteoglycan binding","type":"exact"},{"name":"up-regulation of heparin proteoglycan binding","type":"related"},{"name":"upregulation of heparan sulfate proteoglycan binding","type":"exact"},{"name":"upregulation of heparin proteoglycan binding","type":"related"}],"termid":"GO:1905860"}


id: PBO:0042883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 276","termid":"PBO:0042883"}


id: PBO:0035781
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_membrane_during_vegetative_growth","termid":"PBO:0035781"}


id: PBO:0059237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L10","termid":"PBO:0059237"}


id: GO:0016113
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of polyterpenoid compounds, terpenoids with more than eight isoprene units.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpenoid catabolic process","termid":"GO:0016115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"polyterpenoid catabolic process","synonyms":[{"name":"polyterpene catabolic process","type":"narrow"},{"name":"polyterpene catabolism","type":"narrow"},{"name":"polyterpenoid breakdown","type":"exact"},{"name":"polyterpenoid catabolism","type":"exact"},{"name":"polyterpenoid degradation","type":"exact"}],"termid":"GO:0016113"}


id: PBO:0062826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidative stress induced growth inhibitor 1","termid":"PBO:0062826"}


id: GO:0120218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A quorum sensing process that is modulated by some interaction with a host cell or organism.","definition_xrefs":["GOC:krc","GOC:mlg","PMID:11780122","PMID:16630813"],"direct_ancestors":[{"relation_name":"is_a","term_name":"quorum sensing","termid":"GO:0009372"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"host interaction involved in quorum sensing","termid":"GO:0120218"}


id: MONDO:0003646
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm with neuroendocrine differentiation that arises from the rectum. It includes well differentiated neuroendocrine tumors (low and intermediate grade) and poorly differentiated neuroendocrine carcinomas (high grade).","definition_xrefs":["NCIT:C5698"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"rectal cancer","termid":"MONDO:0006519"},{"relation_name":"is_a","term_name":"intestinal neuroendocrine neoplasm","termid":"MONDO:0002883"},{"relation_name":"is_a","term_name":"epithelial neoplasm of rectum","termid":"MONDO:0024476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"rectum neuroendocrine neoplasm","secondary_identifiers":["DOID:5777","Orphanet:100081","MEDGEN:277576","GARD:19756","UMLS:C1335686"],"synonyms":[{"name":"NET of the rectum","type":"related"},{"name":"neuroendocrine neoplasm of rectum","type":"exact"},{"name":"neuroendocrine neoplasm of the rectum","type":"exact"},{"name":"neuroendocrine tumor of rectum","type":"related"},{"name":"neuroendocrine tumour of rectum","type":"related"},{"name":"rectal NET","type":"related"},{"name":"rectal neuroendocrine neoplasm","type":"exact"},{"name":"rectal neuroendocrine tumor","type":"related"},{"name":"rectum NET","type":"related"},{"name":"rectum neuroendocrine neoplasm","type":"exact"},{"name":"rectum neuroendocrine tumor","type":"related"},{"name":"rectum neuroendocrine tumor, well differentiated, low or intermediate grade","type":"related"},{"name":"rectum neuroendocrine tumour","type":"related"}],"termid":"MONDO:0003646","xrefs":{"Monarch":{"xref_id":"0003646"}}}


id: PBO:0045129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dmx like 2","termid":"PBO:0045129"}


id: PBO:0027181
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_heterochromatin_maintenance_involved_in_chromatin_silencing_at_centromere_outer_repeat","termid":"PBO:0027181"}


id: GO:1901959
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cutin biosynthetic process.","definition_xrefs":["PMID:23243127","GOC:tb","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of macromolecule biosynthetic process","termid":"GO:0010557"},{"relation_name":"is_a","term_name":"regulation of cutin biosynthetic process","termid":"GO:1901957"},{"relation_name":"positively_regulates","term_name":"cutin biosynthetic process","termid":"GO:0010143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cutin biosynthetic process","synonyms":[{"name":"activation of cutin anabolism","type":"exact"},{"name":"activation of cutin biosynthesis","type":"exact"},{"name":"activation of cutin biosynthetic process","type":"narrow"},{"name":"activation of cutin formation","type":"exact"},{"name":"activation of cutin synthesis","type":"exact"},{"name":"positive regulation of cutin anabolism","type":"exact"},{"name":"positive regulation of cutin biosynthesis","type":"exact"},{"name":"positive regulation of cutin formation","type":"exact"},{"name":"positive regulation of cutin synthesis","type":"exact"},{"name":"up regulation of cutin anabolism","type":"exact"},{"name":"up regulation of cutin biosynthesis","type":"exact"},{"name":"up regulation of cutin biosynthetic process","type":"exact"},{"name":"up regulation of cutin formation","type":"exact"},{"name":"up regulation of cutin synthesis","type":"exact"},{"name":"up-regulation of cutin anabolism","type":"exact"},{"name":"up-regulation of cutin biosynthesis","type":"exact"},{"name":"up-regulation of cutin biosynthetic process","type":"exact"},{"name":"up-regulation of cutin formation","type":"exact"},{"name":"up-regulation of cutin synthesis","type":"exact"},{"name":"upregulation of cutin anabolism","type":"exact"},{"name":"upregulation of cutin biosynthesis","type":"exact"},{"name":"upregulation of cutin biosynthetic process","type":"exact"},{"name":"upregulation of cutin formation","type":"exact"},{"name":"upregulation of cutin synthesis","type":"exact"}],"termid":"GO:1901959"}


id: PBO:0058815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7973-1","termid":"PBO:0058815"}


id: MONDO:0018340
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hereditary isolated aplastic anemia (obsolete MONDO:0018340)","secondary_identifiers":["Orphanet:397692"],"termid":"MONDO:0018340","xrefs":{"Monarch":{"xref_id":"0018340"}}}


id: PBO:0047138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAM174A divergent transcript","termid":"PBO:0047138"}


id: PBO:0045537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual oxidase 1","termid":"PBO:0045537"}


id: MONDO:0045037
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An opportunistic infection caused by a heterogeneous group of mitosporic fungi with clear (hyalo-) hyphae in the host. Common causative agents include acremonium; aspergillus; chrysosporium; fusarium; paecilomyces; penicillium; pseudallescheria; scedosporium; and scopulariopsis. Normally a dermatomycoses, it can become invasive in the immunocompromised host.","definition_xrefs":["MESH:D060605"],"direct_ancestors":[{"relation_name":"is_a","term_name":"opportunistic mycosis","termid":"MONDO:0002312"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyalohyphomycosis","secondary_identifiers":["SCTID:240773008","UMLS:C0343952","MEDGEN:452455"],"synonyms":[{"name":"hyalohyphomycosis","type":"exact"}],"termid":"MONDO:0045037","xrefs":{"Monarch":{"xref_id":"0045037"}}}


id: PBO:0053370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 293","termid":"PBO:0053370"}


id: PATO:0001106
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001106 relative strain value (obsolete PATO:0001106)","termid":"PATO:0001106"}


id: PBO:0016088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase like PAN complex subunit Ppk26","termid":"PBO:0016088"}


id: PBO:0041083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRMS1 transcriptional repressor and anoikis regulator","termid":"PBO:0041083"}


id: PBO:0049081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 137","termid":"PBO:0049081"}


id: GO:0141150
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of nitric oxide-cGMP mediated signal transduction.","definition_xrefs":["PMID:14615391"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nitric oxide mediated signal transduction","termid":"GO:0010750"},{"relation_name":"is_a","term_name":"positive regulation of cGMP-mediated signaling","termid":"GO:0010753"},{"relation_name":"is_a","term_name":"regulation of nitric oxide-cGMP mediated signal transduction","termid":"GO:0141149"},{"relation_name":"positively_regulates","term_name":"nitric oxide-cGMP-mediated signaling","termid":"GO:0038060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of nitric oxide-cGMP mediated signal transduction","termid":"GO:0141150"}


id: PBO:0074935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 102","termid":"PBO:0074935"}


id: PBO:0017501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-methyl-2-oxobutanoatehydroxymethyltransferase Ecm31 (predicted)","termid":"PBO:0017501"}


id: PBO:0039245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldehyde dehydrogenase 1 family member B1","termid":"PBO:0039245"}


id: GO:1905795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a puromycin stimulus.","definition_xrefs":["PMID:25736288","GO_REF:0000071","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"},{"relation_name":"is_a","term_name":"response to puromycin","termid":"GO:1905794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to puromycin","synonyms":[{"name":"cellular response to 3'-deoxy-N,N-dimethyl-3'-(O-methyl-L-tyrosinamido)adenosine","type":"exact"}],"termid":"GO:1905795"}


id: PBO:0084128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hexokinase expressed during growth with low glucose levels; induced on non-fermentable carbon sources; required for transcriptional induction of the early meiotic-specific transcription factor IME1; required for sporulation; expression regulated by glucose-repression transcription factors Mig1/2p; protein abundance increases in response to DNA replication stress; EMI2 has a paralog, GLK1, that arose from the whole genome duplication","termid":"PBO:0084128"}


id: MONDO:0014071
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any muscular dystrophy-dystroglycanopathy, type A in which the cause of the disease is a mutation in the B3GALNT2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy-dystroglycanopathy, type A","termid":"MONDO:0000171"},{"relation_name":"is_a","term_name":"muscle-eye-brain disease","termid":"MONDO:0018939"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005336"],"is_obsolete":false,"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11","secondary_identifiers":["OMIM:615181","MEDGEN:767552","GARD:15915","DOID:0111230","UMLS:C3554638"],"synonyms":[{"name":"B3GALNT2 muscular dystrophy-dystroglycanopathy, type A","type":"exact"},{"name":"MDDGA11","type":"related"},{"name":"Walker-Warburg syndrome or muscle-eye-brain disease, B3Galnt2-related","type":"related"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 11","type":"related"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies, type A, 11","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy, type A caused by mutation in B3GALNT2","type":"exact"}],"termid":"MONDO:0014071","xrefs":{"Monarch":{"xref_id":"0014071"}}}


id: MONDO:0030966
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurofacioskeletal syndrome with or without renal agenesis","secondary_identifiers":["OMIM:619194","UMLS:C5543070","MEDGEN:1778926"],"synonyms":[{"name":"NFSRA","type":"exact"},{"name":"Neurodevelopmental Disorder With Corpus Callosum Agenesis, Craniofacial Dysmorphism, and Skeletal Anomalies, With or Without Renal Agenesis","type":"exact"}],"termid":"MONDO:0030966","xrefs":{"Monarch":{"xref_id":"0030966"}}}


id: MONDO:0002474
data:
  {"annotated_genes":["SJAG_01432","SJAG_00281"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87580,87581],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009824"}]},"cv_name":"mondo","definition":"A hereditary disorder characterized by excessive oxalate production, leading to hyperoxaluria.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"kidney disorder","termid":"MONDO:0005240"},{"relation_name":"excluded_subClassOf","term_name":"disorder of glyoxylate metabolism","termid":"MONDO:0017703"},{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"is_a","term_name":"inborn carbohydrate metabolic disorder","termid":"MONDO:0019214"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00281":null,"SJAG_01432":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005066"],"is_obsolete":false,"name":"primary hyperoxaluria","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:D006960","GARD:16530","ICD10CM:E72.53","DOID:2977","MEDGEN:5697","ICD9:271.8","NANDO:2200503","NCIT:C123158","OMIMPS:259900","NORD:1608","Orphanet:416","SCTID:17901006","MedDRA:10020703","UMLS:C0020501"],"synonyms":[{"name":"hyperoxaluria, primary","type":"exact"},{"name":"primary hyperoxaluria","type":"exact"}],"termid":"MONDO:0002474","terms_by_termid":{"MONDO:0009824":null},"xrefs":{"Monarch":{"xref_id":"0002474"}}}


id: PBO:0042557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 20","termid":"PBO:0042557"}


id: FYPO:0008431
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which lipid droplets are formed in the nucleus.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal lipid droplet formation","termid":"FYPO:0008430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"nuclear lipid droplet formation","termid":"FYPO:0008431"}


id: PBO:0049183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine rich extracellular protein 1","termid":"PBO:0049183"}


id: PBO:0063538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudopodium enriched atypical kinase 1","termid":"PBO:0063538"}


id: GO:0032669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of interleukin-25 production.","definition_xrefs":["GOC:mah","PMID:27901018"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"interleukin-25 production","termid":"GO:0032629"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of interleukin-25 production","secondary_identifiers":["GO:0045529","GO:0150148"],"synonyms":[{"name":"regulation of IL-25 production","type":"exact"},{"name":"regulation of interleukin-25 biosynthetic process","type":"narrow"},{"name":"regulation of interleukin-25 secretion","type":"narrow"}],"termid":"GO:0032669"}


id: GO:1990236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of the proteasome core complex (AKA core particle (CP)) from the cytoplasm into the nucleus.","definition_xrefs":["PMID:23982732","GOC:dos","GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"import into nucleus","termid":"GO:0051170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006913","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"proteasome core complex import into nucleus","termid":"GO:1990236"}


id: MONDO:0006481
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from epithelial cells of the ureter.","direct_ancestors":[{"relation_name":"is_a","term_name":"carcinoma","termid":"MONDO:0004993"},{"relation_name":"is_a","term_name":"ureter cancer","termid":"MONDO:0008627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"ureter carcinoma","secondary_identifiers":["NCIT:C8993","SCTID:448864006","EFO:1000609","UMLS:C0600079","MEDGEN:109002","DOID:4939"],"synonyms":[{"name":"carcinoma of the ureter","type":"exact"},{"name":"carcinoma of ureter","type":"exact"},{"name":"ureter cancer","type":"broad"},{"name":"ureter carcinoma","type":"exact"},{"name":"ureteral carcinoma","type":"exact"}],"termid":"MONDO:0006481","xrefs":{"Monarch":{"xref_id":"0006481"}}}


id: PBO:0005877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase 1 (predicted)","termid":"PBO:0005877"}


id: PBO:0080757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Xg glycoprotein (Xg blood group)","termid":"PBO:0080757"}


id: GO:0009033
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: NADH + H+ + trimethylamine-N-oxide = NAD+ + trimethylamine + H2O.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete trimethylamine-N-oxide reductase activity (obsolete GO:0009033)","synonyms":[{"name":"NADH:trimethylamine-N-oxide oxidoreductase","type":"exact"},{"name":"trimethylamine N-oxide reductase","type":"exact"},{"name":"trimethylamine oxidase activity","type":"exact"},{"name":"trimethylamine oxide reductase","type":"exact"}],"termid":"GO:0009033"}


id: PBO:0064666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 1","termid":"PBO:0064666"}


id: GO:0090134
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of epithelial cells from one site to another that contributes to the migration of mesendodermal tissue.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration involved in gastrulation","termid":"GO:0042074"},{"relation_name":"part_of","term_name":"mesendoderm migration","termid":"GO:0090133"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell migration involved in mesendoderm migration","termid":"GO:0090134"}


id: FYPO:0001668
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein processing is normal (i.e. indistinguishable from wild type). Protein processing is any protein maturation process achieved by the cleavage of a peptide bond or bonds within a protein.","definition_xrefs":["GO:0016485","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein degradation during vegetative growth","termid":"FYPO:0002800"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal protein processing during vegetative growth","synonyms":[{"name":"normal protein processing during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001668"}


id: GO:0071511
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that terminates the activity of the active enzyme MAP kinase in the context of conjugation with cellular fusion.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inactivation of MAPK activity involved in conjugation with cellular fusion (obsolete GO:0071511)","synonyms":[{"name":"conjugation with cellular fusion, inactivation of MAPK activity","type":"exact"},{"name":"conjugation with cellular fusion, termination of MAPK activity","type":"exact"},{"name":"inactivation of MAPK activity involved in mating response","type":"related"},{"name":"termination of MAPK activity during conjugation with cellular fusion","type":"exact"}],"termid":"GO:0071511"}


id: GO:0090310
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of DNA methylation-dependent heterochromatin formation.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of heterochromatin formation","termid":"GO:0031452"},{"relation_name":"negatively_regulates","term_name":"DNA methylation-dependent constitutive heterochromatin formation","termid":"GO:0006346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0006325"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0006325"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006325"],"is_obsolete":false,"name":"negative regulation of DNA methylation-dependent heterochromatin formation","synonyms":[{"name":"negative regulation of DNA methylation-dependent heterochromatin assembly","type":"exact"},{"name":"negative regulation of methylation-dependent chromatin silencing","type":"broad"}],"termid":"GO:0090310"}


id: PBO:0003863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"origin recognition complex subunit Orc4","termid":"PBO:0003863"}


id: MONDO:0000345
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease caused by infection with Oropouche virus.","definition_xrefs":["MONDO:patterns/infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bunyaviridae infectious disease","termid":"MONDO:0021641"},{"relation_name":"is_a","term_name":"vector-borne disease","termid":"MONDO:0100120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Oropouche fever","secondary_identifiers":["DOID:0050521","SCTID:72880002","UMLS:C0276386","MEDGEN:547314","ICD10CM:A93.0"],"synonyms":[{"name":"Oropouche virus caused disease or disorder","type":"exact"},{"name":"Oropouche virus disease or disorder","type":"exact"},{"name":"Oropouche virus infectious disease","type":"exact"}],"termid":"MONDO:0000345","xrefs":{"Monarch":{"xref_id":"0000345"}}}


id: MONDO:1011258
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Retinitis pigmentosa that occurs in pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa, non-human animal","termid":"MONDO:1010334"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinitis pigmentosa, pig","secondary_identifiers":["OMIA:001413-9823"],"termid":"MONDO:1011258","xrefs":{"Monarch":{"xref_id":"1011258"}}}


id: MOD:00579
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Other","definition_xrefs":["Unimod:256"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"propionaldehyde +40","synonyms":[{"name":"Delta:H(4)C(3)","type":"related"},{"name":"Propionaldehyde +40","type":"related"}],"termid":"MOD:00579"}


id: SO:0002171
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A telomeric D-loop is a three-stranded DNA displacement loop that forms at the site where the telomeric 3' single-stranded DNA overhang (formed of the repeat sequence TTAGGG in mammals) is tucked back inside the double-stranded component of telomeric DNA molecule, thus forming a t-loop or telomeric-loop and protecting the chromosome terminus.","definition_xrefs":["PMID:15071557","PMID:24012755","PMID:10338204"],"direct_ancestors":[{"relation_name":"is_a","term_name":"origin_of_replication","termid":"SO:0000296"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"telomeric_D_loop","synonyms":[{"name":"telomeric D loop","type":"exact"}],"termid":"SO:0002171"}


id: PBO:0017462
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_part_that_occurs_in","termid":"PBO:0017462"}


id: PBO:0028597
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_UDP-N-acetylglucosamine-dolichyl-phosphate_N-acetylglucosaminephosphotransferase_activity","termid":"PBO:0028597"}


id: PBO:0079394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TUBB4B pseudogene 1","termid":"PBO:0079394"}


id: MONDO:0003148
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete SM-AHNMD (obsolete MONDO:0003148)","termid":"MONDO:0003148","xrefs":{"Monarch":{"xref_id":"0003148"}}}


id: GO:0001769
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed orientation of B cell signaling molecules and associated membrane rafts towards a chemokine gradient of a contact point with an antigen displaying cell.","definition_xrefs":["PMID:9692889","GOC:mgi_curators","PMID:12615889"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of lymphocyte polarity","termid":"GO:0001767"},{"relation_name":"part_of","term_name":"B cell activation","termid":"GO:0042113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007163","GO:0008150"],"is_obsolete":false,"name":"establishment of B cell polarity","synonyms":[{"name":"B cell polarization","type":"exact"},{"name":"B lymphocyte polarization","type":"exact"},{"name":"B-cell polarization","type":"exact"},{"name":"establishment of B lymphocyte polarity","type":"exact"},{"name":"establishment of B-cell polarity","type":"exact"},{"name":"establishment of B-lymphocyte polarity","type":"exact"}],"termid":"GO:0001769"}


id: GO:1901803
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 1,5-anhydro-D-fructose.","definition_xrefs":["PMID:15716041","GOC:TermGenie","MetaCyc:PWY-6992","GOC:yaf","UniPathway:UPA00738"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"polyol biosynthetic process","termid":"GO:0046173"},{"relation_name":"is_a","term_name":"monosaccharide biosynthetic process","termid":"GO:0046364"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"},{"relation_name":"is_a","term_name":"1,5-anhydro-D-fructose metabolic process","termid":"GO:1901801"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"1,5-anhydro-D-fructose biosynthetic process","synonyms":[{"name":"1,5-anhydro-D-fructose anabolism","type":"exact"},{"name":"1,5-anhydro-D-fructose biosynthesis","type":"exact"},{"name":"1,5-anhydro-D-fructose formation","type":"exact"},{"name":"1,5-anhydro-D-fructose synthesis","type":"exact"}],"termid":"GO:1901803"}


id: MONDO:0008097
data:
  {"annotated_genes":["SJAG_03453"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87797],"is_not":false,"summary":null,"term":"MONDO:0008097"}]},"cv_name":"mondo","definition":"Linear nevus sebaceous syndrome (LNSS) is characterized by the association of a large sebaceous nevus, usually appearing on the face or on the scalp, with a broad spectrum of abnormalities that may affect every organ system, including the central nervous system (brain neoplasms, hemimegalencephaly and lateral ventricle enlargement).","definition_xrefs":["Orphanet:2612"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hamartoma","termid":"MONDO:0006499"},{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"},{"relation_name":"is_a","term_name":"palpebral nevus","termid":"MONDO:0020179"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03453":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005093"],"is_obsolete":false,"name":"linear nevus sebaceous syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:163200","MEDGEN:1646345","NCIT:C4678","DOID:0111530","GARD:10291","NORD:1692","UMLS:C4552097"],"synonyms":[{"name":"Epidermal Nevus syndrome, formerly","type":"related"},{"name":"JNP","type":"related"},{"name":"Jadassohn Nevus phakomatosis","type":"related"},{"name":"Jadassohn nevus phakomatosis","type":"related"},{"name":"Nevus Sebaceus Syndrome","type":"exact"},{"name":"Nevus sebaceous of Jadassohn","type":"exact"},{"name":"Nevus sebaceus of Jadassohn","type":"exact"},{"name":"Nevus sebaceus syndrome","type":"exact"},{"name":"SCHIMMELPENNING-FEUERSTEIN-MIMS syndrome","type":"related"},{"name":"SFM","type":"related"},{"name":"SFM syndrome","type":"related"},{"name":"Schimmelpenning Feuerstein Mims syndrome","type":"related"},{"name":"Schimmelpenning syndrome","type":"exact"},{"name":"Schimmelpenning-Feuerstein-Mims syndrome, somatic mosaic","type":"exact"},{"name":"Sfm syndrome","type":"related"},{"name":"Solomon syndrome","type":"exact"},{"name":"epidermal nevus syndrome","type":"related"},{"name":"linear sebaceous Nevus","type":"exact"},{"name":"linear sebaceous Nevus syndrome","type":"related"},{"name":"organoid Nevus","type":"exact"},{"name":"organoid Nevus phakomatosis","type":"related"},{"name":"organoid nevus phakomatosis","type":"related"},{"name":"organoid nevus syndrome","type":"exact"},{"name":"sebaceous Nevus syndrome, linear","type":"related"},{"name":"sebaceous nevus syndrome linear","type":"related"}],"termid":"MONDO:0008097","terms_by_termid":{"MONDO:0008097":null},"xrefs":{"Monarch":{"xref_id":"0008097"}}}


id: PBO:0075688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRC kinase signaling inhibitor 1","termid":"PBO:0075688"}


id: GO:0042670
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of a retinal cone cell.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"camera-type eye photoreceptor cell differentiation","termid":"GO:0060219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retinal cone cell differentiation","termid":"GO:0042670"}


id: PBO:0061289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuronal PAS domain protein 1","termid":"PBO:0061289"}


id: PBO:0053719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 929","termid":"PBO:0053719"}


id: PR:000027533
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A transcriptional regulator prz1 phosphorylated 1 in Schizosaccharomyces pombe. Example: UniProtKB:Q09838-1, MOD:00696.","definition_xrefs":["PMID:12637524","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcriptional regulator prz1","termid":"PR:000027513"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prz1/PhosRes+","pombase_gene_id":"SPAC4G8.13c","synonyms":[{"name":"PomBase_original_PRO_term_name: transcriptional regulator prz1 isoform 1 phosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-prz1/iso:1/Phos:1","type":"exact"},{"name":"prz1/PhosRes+","type":"exact"}],"termid":"PR:000027533"}


id: GO:0070580
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving base J (beta-D-glucosyl-hydroxymethyluracil), a hypermodified thymidine residue found in the genome of kinetoplastid parasites. This modified base is localized primarily to repetitive DNA, namely the telomeres, and is implicated in the regulation of antigenic variation. The base is synthesized in a two-step pathway. Initially, a thymidine residue in DNA is hydroxylated by a thymidine hydroxylase (TH) to form the intermediate hydroxymethyluracil, which is then glucosylated to form base J.","definition_xrefs":["PMID:19114062"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA modification","termid":"GO:0006304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"base J metabolic process","synonyms":[{"name":"base J metabolism","type":"exact"},{"name":"beta-D-glucosyl-HOMedU metabolic process","type":"exact"},{"name":"beta-D-glucosyl-hydroxymethyluracil metabolism","type":"exact"}],"termid":"GO:0070580"}


id: PBO:0072093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S12 pseudogene 24","termid":"PBO:0072093"}


id: GO:0038167
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An epidermal growth factor receptor signaling pathway in which the signal transmitted via the activation of the transcription factor NF-kappaB.","definition_xrefs":["GOC:signaling","PMID:21229383","PMID:21518868","PMID:22132240","GOC:uh"],"gene_count":0,"genotype_count":0,"name":"obsolete epidermal growth factor receptor signaling pathway via positive regulation of NF-kappaB transcription factor activity (obsolete GO:0038167)","synonyms":[{"name":"EGFR signaling pathway via activation of NF-kappaB","type":"exact"},{"name":"epidermal growth factor receptor signalling pathway via positive regulation of NF-kappaB transcription factor activity","type":"exact"}],"termid":"GO:0038167"}


id: FYPO:0003690
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing glycerol and ethanol as the carbon sources.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cell population growth on glycerol/ethanol carbon source","termid":"FYPO:0000442"},{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002058","FYPO:0005447","FYPO:0000003","FYPO:0001985","FYPO:0002057","FYPO:0002060"],"is_obsolete":false,"name":"abolished cell population growth on glycerol/ethanol carbon source","synonyms":[{"name":"abolished growth on glycerol/ethanol carbon source","type":"broad"},{"name":"abolished vegetative cell population growth on glycerol/ethanol carbon source","type":"exact"},{"name":"cell population growth on glycerol/ethanol carbon source abolished","type":"exact"}],"termid":"FYPO:0003690"}


id: GO:1900910
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of olefin metabolic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of metabolic process","termid":"GO:0009893"},{"relation_name":"is_a","term_name":"regulation of olefin metabolic process","termid":"GO:1900908"},{"relation_name":"positively_regulates","term_name":"olefin metabolic process","termid":"GO:1900673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of olefin metabolic process","synonyms":[{"name":"activation of olefin metabolic process","type":"narrow"},{"name":"activation of olefin metabolism","type":"narrow"},{"name":"positive regulation of olefin metabolism","type":"related"},{"name":"up regulation of olefin metabolic process","type":"exact"},{"name":"up regulation of olefin metabolism","type":"related"},{"name":"up-regulation of olefin metabolic process","type":"exact"},{"name":"up-regulation of olefin metabolism","type":"related"},{"name":"upregulation of olefin metabolic process","type":"exact"},{"name":"upregulation of olefin metabolism","type":"related"}],"termid":"GO:1900910"}


id: GO:0015018
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-O-(beta-D-galactosyl-(1->3)-beta-D-galactosyl-(1->4)-beta-D-xylosyl)-L-seryl-[protein] + UDP-alpha-D-glucuronate = 3-O-(beta-D-GlcA-(1->3)-beta-D-Gal-(1->3)-beta-D-Gal-(1->4)-beta-D-Xyl)-L-seryl-[protein] + H+ + UDP.","definition_xrefs":["EC:2.4.1.135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucuronosyltransferase activity","termid":"GO:0015020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016757","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity","secondary_identifiers":["Reactome:R-HSA-3560802","RHEA:24168","MetaCyc:2.4.1.135-RXN","Reactome:R-HSA-1889955"],"synonyms":[{"name":"UDP-glucuronate:3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosyl-protein D-glucuronosyltransferase activity","type":"related"},{"name":"UDPglucuronate:3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosyl-protein D-glucuronosyltransferase activity","type":"related"},{"name":"glucuronosyltransferase I activity","type":"narrow"},{"name":"uridine diphosphate glucuronic acid:acceptor glucuronosyltransferase activity","type":"related"}],"termid":"GO:0015018"}


id: PBO:0082583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chromatin-associated protein; required for sister chromatid cohesion; interacts with DNA polymerase alpha (Pol1p); recruits Mms22p to replication forks during S phase, and may link DNA synthesis to sister chromatid cohesion","termid":"PBO:0082583"}


id: PBO:0054998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2413","termid":"PBO:0054998"}


id: PBO:0042716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal AT-AC splicing factor","termid":"PBO:0042716"}


id: MONDO:0013354
data:
  {"annotated_genes":["SJAG_00797"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89002],"is_not":false,"summary":null,"term":"MONDO:0013354"}]},"cv_name":"mondo","definition":"Any autosomal recessive spastic ataxia in which the cause of the disease is a mutation in the MTPAP gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial oxidative phosphorylation disorder","termid":"MONDO:0016387"},{"relation_name":"is_a","term_name":"autosomal recessive spastic ataxia","termid":"MONDO:0017847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00797":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0006025","MONDO:0004069"],"is_obsolete":false,"name":"spastic ataxia 4","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:254343","OMIM:613672","DOID:0050943","ICD10CM:G11.4","MEDGEN:462275","UMLS:C3150925","GARD:10992"],"synonyms":[{"name":"MTPAP autosomal recessive spastic ataxia","type":"exact"},{"name":"SPAX4","type":"exact"},{"name":"autosomal recessive spastic ataxia - optic atrophy - dysarthria","type":"related"},{"name":"autosomal recessive spastic ataxia 4","type":"related"},{"name":"autosomal recessive spastic ataxia caused by mutation in MTPAP","type":"exact"},{"name":"autosomal recessive spastic ataxia type 4","type":"exact"},{"name":"autosomal recessive spastic ataxia-optic atrophy-dysarthria syndrome","type":"related"},{"name":"spastic ataxia 4, autosomal recessive","type":"related"},{"name":"spastic ataxia type 4","type":"exact"}],"termid":"MONDO:0013354","terms_by_termid":{"MONDO:0013354":null},"xrefs":{"Monarch":{"xref_id":"0013354"}}}


id: PBO:0075223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 2","termid":"PBO:0075223"}


id: SO:0001345
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"2prime_O_methyluridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"two_prime_O_methyluridine","secondary_identifiers":["RNAMOD:053"],"synonyms":[{"name":"2'-O-methyluridine","type":"exact"},{"name":"Um","type":"exact"},{"name":"two prime O methyluridine","type":"exact"}],"termid":"SO:0001345"}


id: MONDO:0014973
data:
  {"annotated_genes":["SJAG_01875","SJAG_02679"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88928,88929],"is_not":false,"summary":null,"term":"MONDO:0014973"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01875":null,"SJAG_02679":null},"genotype_count":0,"is_obsolete":false,"name":"sudden cardiac failure, infantile","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:617222","MEDGEN:934631","UMLS:C4310664"],"synonyms":[{"name":"PPA2 deficiency","type":"broad"},{"name":"PPA2-associated sudden cardiac death","type":"exact"},{"name":"SCFI","type":"exact"},{"name":"infantile sudden cardiac failure","type":"exact"},{"name":"sudden Cardiac failure, infantile","type":"exact"},{"name":"sudden cardiac failure, infantile; SCFI","type":"exact"}],"termid":"MONDO:0014973","terms_by_termid":{"MONDO:0014973":null},"xrefs":{"Monarch":{"xref_id":"0014973"}}}


id: GO:0042079
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete GPI/GSI anchor metabolic process (obsolete GO:0042079)","synonyms":[{"name":"GPI/GSI anchor metabolic process","type":"exact"}],"termid":"GO:0042079"}


id: GO:0098967
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The exocytic fusion of neurotransmitter receptor containing vesicles with the postsynaptic membrane resulting in the integration of NT receptors, enabling them to participate in neurotransmitter reception. This process includes tethering and docking steps that prepare vesicles for fusion.","definition_xrefs":["PMID:19503082"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exocytosis","termid":"GO:0006887"},{"relation_name":"is_a","term_name":"regulation of postsynaptic membrane neurotransmitter receptor levels","termid":"GO:0099072"},{"relation_name":"part_of","term_name":"neurotransmitter receptor transport to postsynaptic membrane","termid":"GO:0098969"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"exocytic insertion of neurotransmitter receptor to postsynaptic membrane","termid":"GO:0098967"}


id: PBO:0077008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THAP domain containing 12 pseudogene 10","termid":"PBO:0077008"}


id: GO:0010272
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a silver ion stimulus.","definition_xrefs":["PMID:16367966"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to metal ion","termid":"GO:0010038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to silver ion","termid":"GO:0010272"}


id: MONDO:0016174
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete paraneoplastic sensory ganglionopathy (obsolete MONDO:0016174)","secondary_identifiers":["Orphanet:208999"],"synonyms":[{"name":"paraneoplastic sensory neuronopathy","type":"exact"}],"termid":"MONDO:0016174","xrefs":{"Monarch":{"xref_id":"0016174"}}}


id: PBO:0056147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mab-21 like 2","termid":"PBO:0056147"}


id: MONDO:0031019
data:
  {"annotated_genes":["SJAG_02322","SJAG_03895"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88767,88768],"is_not":false,"summary":null,"term":"MONDO:0031019"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary spastic paraplegia","termid":"MONDO:0019064"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02322":null,"SJAG_03895":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"spastic paraplegia 87, autosomal recessive","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1813069","OMIM:619966","UMLS:C5774182","Orphanet:631088","DOID:0070456"],"synonyms":[{"name":"SPG87","type":"exact"},{"name":"autosomal recessive spastic paraplegia type 87","type":"exact"},{"name":"spastic paraplegia 87, autosomal recessive","type":"exact"}],"termid":"MONDO:0031019","terms_by_termid":{"MONDO:0031019":null},"xrefs":{"Monarch":{"xref_id":"0031019"}}}


id: PBO:0012064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dipeptide transmembrane transporter Dal5h1 (predicted)","termid":"PBO:0012064"}


id: MONDO:0013128
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial juvenile hyperuricemic nephropathy type 2 is a rare autosomal dominantly inherited disease of childhood characterized by hypoproliferative anemia, hyperuricemia and slowly progressing kidney failure due to dysregulation of the renin-angiotensin system (RAS).","definition_xrefs":["Orphanet:217330"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial juvenile hyperuricemic nephropathy","termid":"MONDO:0000608"},{"relation_name":"is_a","term_name":"inherited renal tubular disease","termid":"MONDO:0015962"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"familial juvenile hyperuricemic nephropathy type 2","secondary_identifiers":["SCTID:721840000","UMLS:C2751310","DOID:0061119","OMIM:613092","MEDGEN:414347","MESH:C567760","GARD:13461"],"synonyms":[{"name":"ADTKD-REN","type":"exact"},{"name":"FJHN type 2","type":"exact"},{"name":"HNFJ2","type":"related"},{"name":"REN familial juvenile hyperuricemic nephropathy","type":"exact"},{"name":"REN-associated FJHN","type":"exact"},{"name":"REN-associated familial juvenile hyperuricemic nephropathy","type":"exact"},{"name":"REN-associated kidney disease","type":"exact"},{"name":"REN-related autosomal dominant tubulointerstitial kidney disease","type":"related"},{"name":"autosomal dominant tubulointerstitial kidney disease due to mutations in REN","type":"exact"},{"name":"early-onset hyperuricemia, Anemia, and progressive kidney failure","type":"related"},{"name":"familial juvenile hyperuricemic nephropathy caused by mutation in REN","type":"exact"},{"name":"familial juvenile hyperuricemic nephropathy type 2","type":"exact"},{"name":"hyperuricemic nephropathy, familial juvenile, 2","type":"related"},{"name":"hyperuricemic nephropathy, familial juvenile, type 2","type":"exact"},{"name":"tubulointerstitial kidney disease, autosomal dominant, 4","type":"exact"}],"termid":"MONDO:0013128","xrefs":{"Monarch":{"xref_id":"0013128"}}}


id: PBO:0034348
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-connected_to","termid":"PBO:0034348"}


id: FYPO:0007161
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show decreased sensitivity to oxidative stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"resistance to stress during vegetative growth","termid":"FYPO:0000850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"resistance to oxidative stress","synonyms":[{"name":"increased growth during cellular response to oxidative stress","type":"exact"},{"name":"increased vegetative cell population growth during cellular response to oxidative stress","type":"exact"},{"name":"resistance to oxidative stress during mitotic cell cycle","type":"related"},{"name":"resistance to oxidative stress during vegetative growth","type":"exact"},{"name":"resistant to oxidative stress","type":"exact"}],"termid":"FYPO:0007161"}


id: PBO:0003779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk23","termid":"PBO:0003779"}


id: FYPO:0006920
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the frequency of DNA recombination at replication fork barriers is decreased.","definition_xrefs":["PMID:31149897","PMID:28586299","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA recombination during vegetative growth","termid":"FYPO:0001345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000293","FYPO:0000002"],"is_obsolete":false,"name":"decreased DNA recombination at mitotic DNA replication fork barriers","synonyms":[{"name":"decreased DNA recombination at mitotic DNA replication fork barriers during mitotic cell cycle","type":"related"},{"name":"decreased DNA recombination at mitotic DNA replication fork barriers during vegetative growth","type":"exact"},{"name":"decreased recombination at mitotic DNA replication fork barriers","type":"exact"},{"name":"reduced DNA recombination at mitotic DNA replication fork barriers","type":"exact"}],"termid":"FYPO:0006920"}


id: PR:O13837
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 4-aminobutyrate aminotransferase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02170","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-aminobutyrate aminotransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19D5.07","secondary_identifiers":["UniProtKB:O13837"],"synonyms":[{"name":"GABA aminotransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GABA transaminase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GABA-AT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ABAT","type":"exact"},{"name":"gamma-amino-N-butyrate transaminase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13837"}


id: PBO:0035913
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_rate_of_medial_membrane_band_assembly","termid":"PBO:0035913"}


id: GO:0016883
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A grouping term for carbon-nitrogen ligases that cannot be more accurately categorized.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete other carbon-nitrogen ligase activity (obsolete GO:0016883)","synonyms":[{"name":"other carbon-nitrogen ligase activity","type":"exact"}],"termid":"GO:0016883"}


id: GO:0038098
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Binding to a bone morphogenetic protein (BMP) in the extracellular region, and inhibiting BMP signaling by preventing BMP from binding to its cell surface receptor.","definition_xrefs":["GOC:signaling","GOC:bf","PMID:19855014"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of BMP signaling pathway","termid":"GO:0030514"},{"relation_name":"is_a","term_name":"sequestering of extracellular ligand from receptor","termid":"GO:0035581"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"sequestering of BMP from receptor via BMP binding","synonyms":[{"name":"extracellular sequestering of BMP","type":"broad"},{"name":"extracellular sequestering of bone morphogenetic protein","type":"broad"}],"termid":"GO:0038098"}


id: PBO:0054261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1646","termid":"PBO:0054261"}


id: PBO:0053581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 604","termid":"PBO:0053581"}


id: PBO:0054223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1605","termid":"PBO:0054223"}


id: GO:0051250
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of lymphocyte activation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of leukocyte activation","termid":"GO:0002695"},{"relation_name":"is_a","term_name":"regulation of lymphocyte activation","termid":"GO:0051249"},{"relation_name":"negatively_regulates","term_name":"lymphocyte activation","termid":"GO:0046649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of lymphocyte activation","synonyms":[{"name":"down regulation of lymphocyte activation","type":"exact"},{"name":"down-regulation of lymphocyte activation","type":"exact"},{"name":"downregulation of lymphocyte activation","type":"exact"},{"name":"inhibition of lymphocyte activation","type":"narrow"}],"termid":"GO:0051250"}


id: GO:0061254
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a mesonephric glomerular parietal epithelial cell over time, from its formation to the mature structure. Mesonephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesonephric glomerular epithelial cell development","termid":"GO:0061251"},{"relation_name":"is_a","term_name":"glomerular parietal epithelial cell development","termid":"GO:0072016"},{"relation_name":"part_of","term_name":"mesonephric glomerular parietal epithelial cell differentiation","termid":"GO:0061253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric glomerular parietal epithelial cell development","termid":"GO:0061254"}


id: MONDO:0016503
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"epidermal disease","termid":"MONDO:0019268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"congenital erosive and vesicular dermatosis","secondary_identifiers":["icd11.foundation:2106762282","Orphanet:231573","UMLS:C4751164","MEDGEN:1669240","GARD:20619"],"synonyms":[{"name":"CEVD","type":"exact"},{"name":"congenital erosive and vesicular dermatosis with reticulated supple scarring","type":"exact"}],"termid":"MONDO:0016503","xrefs":{"Monarch":{"xref_id":"0016503"}}}


id: PBO:0080985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZBTB20 antisense RNA 1","termid":"PBO:0080985"}


id: GO:1905889
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cellular response to very-low-density lipoprotein particle stimulus.","definition_xrefs":["GOC:bc","GO_REF:0000058","GOC:aruk","GOC:TermGenie","PMID:7592957"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"is_a","term_name":"regulation of cellular response to very-low-density lipoprotein particle stimulus","termid":"GO:1905890"},{"relation_name":"positively_regulates","term_name":"cellular response to very-low-density lipoprotein particle stimulus","termid":"GO:0090731"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cellular response to very-low-density lipoprotein particle stimulus","synonyms":[{"name":"activation of cellular response to VLDL particle stimulus","type":"narrow"},{"name":"activation of cellular response to very-low-density lipoprotein particle stimulus","type":"narrow"},{"name":"positive regulation of cellular response to VLDL particle stimulus","type":"exact"},{"name":"up regulation of cellular response to VLDL particle stimulus","type":"exact"},{"name":"up regulation of cellular response to very-low-density lipoprotein particle stimulus","type":"exact"},{"name":"up-regulation of cellular response to VLDL particle stimulus","type":"exact"},{"name":"up-regulation of cellular response to very-low-density lipoprotein particle stimulus","type":"exact"},{"name":"upregulation of cellular response to VLDL particle stimulus","type":"exact"},{"name":"upregulation of cellular response to very-low-density lipoprotein particle stimulus","type":"exact"}],"termid":"GO:1905889"}


id: GO:0004473
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-malate + NADP+ = pyruvate + CO2 + NADPH.","definition_xrefs":["RHEA:18253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malic enzyme activity","termid":"GO:0004470"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"malate dehydrogenase (decarboxylating) (NADP+) activity","secondary_identifiers":["KEGG_REACTION:R00216","MetaCyc:MALIC-NADP-RXN","Reactome:R-HSA-9012036","EC:1.1.1.40","Reactome:R-HSA-9012349"],"synonyms":[{"name":"'malic' enzyme","type":"related"},{"name":"(S)-malate:NADP+ oxidoreductase (oxaloacetate-decarboxylating)","type":"related"},{"name":"L-malate:NADP oxidoreductase activity","type":"related"},{"name":"NADP-linked decarboxylating malic enzyme","type":"related"},{"name":"NADP-malic enzyme activity","type":"related"},{"name":"NADP-specific malate dehydrogenase activity","type":"related"},{"name":"NADP-specific malic enzyme","type":"related"},{"name":"malate dehydrogenase (NADP, decarboxylating)","type":"related"},{"name":"malate dehydrogenase (decarboxylating, NADP)","type":"related"}],"termid":"GO:0004473"}


id: MONDO:0010200
data:
  {"annotated_genes":["SJAG_02399"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89078],"is_not":false,"summary":null,"term":"MONDO:0010200"}]},"cv_name":"mondo","definition":"A very rare inherited multisystemic disease presenting non-specific neurological, hepatic, psychiatric or osseo-muscular manifestations due to excessive copper deposition in the body.","definition_xrefs":["Orphanet:905"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"nervous system disorder","termid":"MONDO:0005071"},{"relation_name":"excluded_subClassOf","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"excluded_subClassOf","term_name":"movement disorder","termid":"MONDO:0005395"},{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"excluded_subClassOf","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"},{"relation_name":"excluded_subClassOf","term_name":"supranuclear oculomotor palsy","termid":"MONDO:0020257"},{"relation_name":"excluded_subClassOf","term_name":"inherited dystonia","termid":"MONDO:0044807"},{"relation_name":"is_a","term_name":"inborn metal metabolism disorder","termid":"MONDO:0004689"},{"relation_name":"is_a","term_name":"disorder of copper metabolism","termid":"MONDO:0017762"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02399":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"Wilson disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:D006527","NCIT:C84756","ICD10CM:E83.01","NANDO:2200579","MedDRA:10019819","NORD:1856","DOID:893","GARD:7893","NANDO:1200655","icd11.foundation:468161208","SCTID:88518009","UMLS:C0019202","OMIM:277900","MEDGEN:42426"],"synonyms":[{"name":"WD","type":"related"},{"name":"Westphal pseudosclerosis","type":"exact"},{"name":"Westphal-Strumpell syndrome","type":"exact"},{"name":"Wilson disease","type":"exact"},{"name":"Wilson's disease","type":"exact"},{"name":"Wnd","type":"related"},{"name":"cerebral pseudosclerosis","type":"exact"},{"name":"hepatolenticular Degeneration","type":"related"},{"name":"hepatolenticular degeneration","type":"exact"}],"termid":"MONDO:0010200","terms_by_termid":{"MONDO:0010200":null},"xrefs":{"Monarch":{"xref_id":"0010200"}}}


id: FYPO:0004480
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription from a calcineurin-dependent response element (CDRE)-containing promoter is decreased during a cellular response to micafungin.","definition_xrefs":["PMID:16928959","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased transcription from RNA polymerase II promoter during vegetative growth","termid":"FYPO:0005229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0005447","FYPO:0006551","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased transcription from CDRE promoter in response to micafungin","synonyms":[{"name":"decreased transcription from CDRE promoter during cellular response to micafungin","type":"exact"},{"name":"decreased transcription from CDRE promoter in response to micafungin during mitotic cell cycle","type":"related"},{"name":"decreased transcription from CDRE promoter in response to micafungin during vegetative growth","type":"exact"},{"name":"reduced transcription from CDRE promoter in response to micafungin","type":"exact"}],"termid":"FYPO:0004480"}


id: GO:0070193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a synaptonemal complex. A synaptonemal complex is a proteinaceous scaffold formed between homologous chromosomes during meiosis.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome organization","termid":"GO:0051276"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"synaptonemal complex organization","synonyms":[{"name":"synaptonemal complex organisation","type":"exact"}],"termid":"GO:0070193"}


id: PBO:0075399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SP140 nuclear body protein","termid":"PBO:0075399"}


id: PBO:0043328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDC like kinase 3 pseudogene 2","termid":"PBO:0043328"}


id: PBO:0090826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase","termid":"PBO:0090826"}


id: PR:B5BP49
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC460.05 gene.","definition_xrefs":["UniProtKB:B5BP49","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transporter C460.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC460.05","synonyms":[{"name":"Spom972h-SPBC460.05","type":"exact"}],"termid":"PR:B5BP49"}


id: GO:0120271
data:
  {"annotated_genes":["SJAG_03883"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91735],"is_not":false,"summary":null,"term":"GO:0120271"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of selective degradation of meiosis-specific nuclear transcribed transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein.","definition_xrefs":["GOC:krc","PMID:24920274"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nuclear mRNA surveillance of meiosis-specific transcripts","termid":"GO:0120270"},{"relation_name":"is_a","term_name":"negative regulation of mRNA catabolic process","termid":"GO:1902373"},{"relation_name":"negatively_regulates","term_name":"nuclear mRNA surveillance of meiosis-specific transcripts","termid":"GO:0033621"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03883":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0016071","GO:0008150"],"is_obsolete":false,"name":"negative regulation of nuclear mRNA surveillance of meiosis-specific transcripts","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"negative regulation of nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts","type":"exact"}],"termid":"GO:0120271","terms_by_termid":{"GO:0120271":null}}


id: GO:0046194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of pentachlorophenol, a chlorinated insecticide and fungicide used primarily to protect timber from fungal rot and wood boring insects. Pentachlorophenol is significantly toxic to mammals, plants, and many microorganisms.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete pentachlorophenol biosynthetic process (obsolete GO:0046194)","synonyms":[{"name":"pentachlorophenol anabolism","type":"exact"},{"name":"pentachlorophenol biosynthesis","type":"exact"},{"name":"pentachlorophenol biosynthetic process","type":"exact"},{"name":"pentachlorophenol formation","type":"exact"},{"name":"pentachlorophenol synthesis","type":"exact"}],"termid":"GO:0046194"}


id: GO:0047450
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (3R)-hydroxybutanoyl-[acyl-carrier-protein] = (2E)-butenoyl-[acyl-carrier-protein] + H2O.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase activity (obsolete GO:0047450)","synonyms":[{"name":"(3R)-hydroxybutanoyl-[acyl-carrier-protein] hydratase activity","type":"exact"},{"name":"3-hydroxybutyryl acyl carrier protein dehydratase activity","type":"exact"},{"name":"beta-hydroxybutyryl acyl carrier protein (ACP) dehydrase activity","type":"exact"},{"name":"crotonoyl-ACP hydratase activity","type":"exact"},{"name":"crotonoyl-[acyl-carrier protein] hydratase activity","type":"exact"},{"name":"crotonoyl-[acyl-carrier-protein] hydratase activity","type":"exact"},{"name":"crotonoyl-acyl-carrier-protein hydratase activity","type":"exact"},{"name":"crotonyl acyl carrier protein hydratase activity","type":"exact"}],"termid":"GO:0047450"}


id: GO:0018010
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: palmitoyl-CoA + glycoprotein = CoA + N-palmitoylglycoprotein.","definition_xrefs":["EC:2.3.1.96"],"gene_count":0,"genotype_count":0,"name":"obsolete glycoprotein N-palmitoyltransferase activity (obsolete GO:0018010)","synonyms":[{"name":"mucus glycoprotein fatty acyltransferase","type":"narrow"},{"name":"palmitoyl-CoA:glycoprotein N-palmitoyltransferase activity","type":"related"}],"termid":"GO:0018010"}


id: PBO:0117097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB12 antisense RNA 1","termid":"PBO:0117097"}


id: PBO:0074458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingomyelin phosphodiesterase 3","termid":"PBO:0074458"}


id: PR:Q9Y7Y5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rtt109 gene.","definition_xrefs":["UniProtKB:Q9Y7Y5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone acetyltransferase rtt109 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC342.06c","synonyms":[{"name":"Spom972h-rtt109","type":"exact"}],"termid":"PR:Q9Y7Y5"}


id: PBO:0081193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zic family member 5","termid":"PBO:0081193"}


id: MOD:00421
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue hydrogen atom on a carbon with a carbohydrate-like group through a glycosidic bond.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosylated residue","termid":"MOD:00693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"C-glycosylated residue","synonyms":[{"name":"CGlycoRes","type":"exact"}],"termid":"MOD:00421"}


id: GO:1901962
data:
  {"annotated_genes":["SJAG_01890","SJAG_01589"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104560,90212],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990543"}]},"cv_name":"biological_process","definition":"The directed movement of S-adenosyl-L-methionine across a membrane.","definition_xrefs":["PMID:10497160","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosyl-L-methionine transport","termid":"GO:0015805"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01589":null,"SJAG_01890":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"S-adenosyl-L-methionine transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"S-adenosylmethionine transmembrane transport","type":"exact"},{"name":"SAM transmembrane transport","type":"exact"}],"termid":"GO:1901962","terms_by_termid":{"GO:1990543":null}}


id: CHEBI:22977
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"A zinc group element atom that has formula Cd.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cadmium atom","termid":"CHEBI:22977"}


id: PBO:0052821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 87, pseudogene","termid":"PBO:0052821"}


id: PBO:0056851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microsomal glutathione S-transferase 3","termid":"PBO:0056851"}


id: PBO:0028121
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_lateral_cortical_node","termid":"PBO:0028121"}


id: FYPO:0002759
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the pre-autophagosomal structure is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization during vegetative growth","termid":"FYPO:0001179"},{"relation_name":"is_a","term_name":"abnormal protein localization to pre-autophagosomal structure","termid":"FYPO:0002614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to pre-autophagosomal structure","synonyms":[{"name":"abolished protein localisation to pre-autophagosomal structure","type":"exact"},{"name":"abolished protein localization to PAS","type":"exact"},{"name":"abolished protein localization to pre-autophagosomal structure during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to pre-autophagosomal structure during vegetative growth","type":"exact"},{"name":"protein localization to pre-autophagosomal structure abolished","type":"exact"}],"termid":"FYPO:0002759"}


id: PBO:0031029
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_nuclear_envelope_organization","termid":"PBO:0031029"}


id: PR:Q10344
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A translationally-controlled tumor protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01574","PANTHER:PTHR11991:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translationally-controlled tumor protein homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F12.02c","secondary_identifiers":["UniProtKB:Q10344"],"synonyms":[{"name":"Spom972h-TPT1","type":"exact"},{"name":"TCTP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"p23fyp (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10344"}


id: PBO:0027316
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_protein_localization_to_mitotic_spindle","termid":"PBO:0027316"}


id: PBO:0069715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 995, pseudogene","termid":"PBO:0069715"}


id: PR:O14327
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A polyadenylate-binding protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyadenylate-binding protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16E9.12c","secondary_identifiers":["UniProtKB:O14327"],"synonyms":[{"name":"PABII (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PABP-2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPBC16E9.12c","type":"related"},{"name":"Spom972h-PABPN1","type":"exact"},{"name":"poly(A)-binding protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"poly(A)-binding protein II (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14327"}


id: PBO:0079992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 30","termid":"PBO:0079992"}


id: MONDO:0956986
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A connective tissue cancer that is characterized as the combination of solitary fibrous tumors and hemangiopericytomas.","definition_xrefs":["DOID:0080897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"connective tissue neoplasm","termid":"MONDO:0021581"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solitary fibrous tumor/hemangiopericytoma","termid":"MONDO:0956986","xrefs":{"Monarch":{"xref_id":"0956986"}}}


id: PBO:0002615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inheritance GTPase (predicted)","termid":"PBO:0002615"}


id: PBO:0079932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uroporphyrinogen III synthase","termid":"PBO:0079932"}


id: GO:0032239
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of nucleobases, nucleosides, nucleotides and nucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transport","termid":"GO:0051049"},{"relation_name":"regulates","term_name":"nucleobase-containing compound transport","termid":"GO:0015931"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of nucleobase-containing compound transport","synonyms":[{"name":"regulation of nucleobase, nucleoside, nucleotide and nucleic acid transport","type":"related"}],"termid":"GO:0032239"}


id: PBO:0048847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetylglucosamine-1-phosphate transferase subunit gamma","termid":"PBO:0048847"}


id: PBO:0064158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group IIC","termid":"PBO:0064158"}


id: PBO:0046529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum protein 29","termid":"PBO:0046529"}


id: PBO:0016586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transthyretin/hydroxyisourate hydrolase (predicted)","termid":"PBO:0016586"}


id: SO:0000340
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"replicon","termid":"SO:0001235"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome","secondary_identifiers":["http://en.wikipedia.org/wiki/Chromosome"],"termid":"SO:0000340"}


id: GO:0030794
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + (S)-coclaurine = S-adenosyl-L-homocysteine + (S)-N-methylcoclaurine.","definition_xrefs":["EC:2.1.1.140"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016741"],"is_obsolete":false,"name":"(S)-coclaurine-N-methyltransferase activity","secondary_identifiers":["MetaCyc:2.1.1.140-RXN","RHEA:17409"],"synonyms":[{"name":"S-adenosyl-L-methionine:(S)-coclaurine-N-methyltransferase activity","type":"related"}],"termid":"GO:0030794"}


id: MONDO:0000816
data:
  {"annotated_genes":["SJAG_04980"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88328],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014352"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"overnutrition","termid":"MONDO:0003916"},{"relation_name":"is_a","term_name":"inborn errors of metabolism","termid":"MONDO:0019052"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04980":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"abdominal obesity-metabolic syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:419670","MESH:C535554","Orphanet:411969","ICD9:277.7","UMLS:C2930930","DOID:0060611","OMIMPS:605552","ICD10CM:E88.81","NCIT:C84442"],"synonyms":[{"name":"metabolic syndrome","type":"exact"},{"name":"metabolic syndrome X","type":"narrow"}],"termid":"MONDO:0000816","terms_by_termid":{"MONDO:0014352":null},"xrefs":{"Monarch":{"xref_id":"0000816"}}}


id: PBO:0049812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HDAC4 antisense RNA 1","termid":"PBO:0049812"}


id: MOD:01106
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tryptophan residue to N-formyl-L-tryptophan.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-formylated residue","termid":"MOD:00409"},{"relation_name":"is_a","term_name":"modified L-tryptophan residue","termid":"MOD:00918"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-formyl-L-tryptophan","synonyms":[{"name":"formyl tryptophanyl","type":"exact"}],"termid":"MOD:01106"}


id: MONDO:0015930
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete respiratory malformation (obsolete MONDO:0015930)","secondary_identifiers":["Orphanet:182111"],"termid":"MONDO:0015930","xrefs":{"Monarch":{"xref_id":"0015930"}}}


id: MONDO:0004744
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"glaucoma","termid":"MONDO:0005041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"borderline glaucoma","secondary_identifiers":["UMLS:C1533674","DOID:9283","ICD9:365.00","MEDGEN:735885","SCTID:193531003"],"synonyms":[{"name":"Preglaucoma","type":"exact"}],"termid":"MONDO:0004744","xrefs":{"Monarch":{"xref_id":"0004744"}}}


id: GO:1903676
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cap-dependent translational initiation.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:bf","GOC:PARL","PMID:11959995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cap-dependent translational initiation","termid":"GO:1903674"},{"relation_name":"is_a","term_name":"positive regulation of cytoplasmic translational initiation","termid":"GO:1904690"},{"relation_name":"positively_regulates","term_name":"cap-dependent translational initiation","termid":"GO:0002191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0002181"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0002181"],"is_obsolete":false,"name":"positive regulation of cap-dependent translational initiation","synonyms":[{"name":"activation of cap-dependent translational initiation","type":"narrow"},{"name":"up regulation of cap-dependent translational initiation","type":"exact"},{"name":"up-regulation of cap-dependent translational initiation","type":"exact"},{"name":"upregulation of cap-dependent translational initiation","type":"exact"}],"termid":"GO:1903676"}


id: PBO:0077656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF receptor superfamily member 8","termid":"PBO:0077656"}


id: PBO:0088840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vaculoar proteinase B inhibitor Pbi2","termid":"PBO:0088840"}


id: PBO:0018170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNF2 family ATP-dependent DNA helicase Rhp26","termid":"PBO:0018170"}


id: PBO:0030897
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-transcription_regulation_phenotype_during_vegetative_growth","termid":"PBO:0030897"}


id: PBO:0003406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extender of the chronological lifespan protein Ecl2","termid":"PBO:0003406"}


id: FYPO:0002591
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone phosphorylation is abnormal. All histone phosphorylation may be affected, or phosphorylation of specific sites on specific histones may be altered.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone modification during vegetative growth","termid":"FYPO:0000330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0002274","FYPO:0001320","FYPO:0005447","FYPO:0002494"],"is_obsolete":false,"name":"abnormal histone phosphorylation during vegetative growth","synonyms":[{"name":"abnormal histone phosphorylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002591"}


id: MONDO:0007644
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Decreased or absent levels of serum immunoglobulin A, with normal serum levels of immunoglobulin G and immunoglobulin M in a patient who is older than 4 years of age and in whom all other causes of hypogammaglobulinemia have been excluded. Affected individuals may be asymptomatic or have frequent infections, allergic reactions, or autoimmune disorders.","definition_xrefs":["NCIT:C123434"],"direct_ancestors":[{"relation_name":"is_a","term_name":"selective IgA deficiency disease","termid":"MONDO:0001341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"IgAD1","secondary_identifiers":["MESH:C536290","UMLS:C2931161","OMIM:137100","MEDGEN:419725"],"synonyms":[{"name":"IGAD1","type":"exact"},{"name":"IMMUNOGLOBULIN A deficiency 1","type":"related"},{"name":"IgA, selective deficiency of","type":"related"},{"name":"IgAD1","type":"exact"},{"name":"Immunoglobulin A, selective deficiency of","type":"related"},{"name":"gamma-A-globulin, selective deficiency of","type":"related"},{"name":"immunoglobulin A deficiency, autosomal recessive, autosomal dominant, isolated cases","type":"exact"}],"termid":"MONDO:0007644","xrefs":{"Monarch":{"xref_id":"0007644"}}}


id: PBO:0067325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 416, pseudogene","termid":"PBO:0067325"}


id: GO:0018983
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving Z-phenylacetaldoxime, a member of the glucosinolate group of compounds, a class of natural products that are gaining increasing interest as cancer-preventing agents and crop protectants.","definition_xrefs":["UM-BBD_pathwayID:pao"],"gene_count":0,"genotype_count":0,"name":"obsolete Z-phenylacetaldoxime metabolic process (obsolete GO:0018983)","synonyms":[{"name":"Z-phenylacetaldoxime metabolism","type":"exact"}],"termid":"GO:0018983"}


id: PBO:0038352
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-ameliorates_condition","termid":"PBO:0038352"}


id: PBO:0039568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD62P1-PARP4P3 readthrough, transcribed pseudogene","termid":"PBO:0039568"}


id: GO:0140719
data:
  {"annotated_genes":["SJAG_00934","SJAG_00302","SJAG_04039","SJAG_03916","SJAG_03356","SJAG_04574","SJAG_05247","SJAG_00266","SJAG_04253","SJAG_02119","SJAG_02846","SJAG_01075","SJAG_01675","SJAG_01599","SJAG_04141","SJAG_03624","SJAG_02409","SJAG_03042","SJAG_02621","SJAG_00414","SJAG_03543","SJAG_00160","SJAG_03128","SJAG_00769","SJAG_01008","SJAG_01540","SJAG_02401","SJAG_04030","SJAG_04186","SJAG_02576","SJAG_03680","SJAG_03193","SJAG_00756","SJAG_00087","SJAG_03689","SJAG_01601","SJAG_01062","SJAG_03844","SJAG_02592","SJAG_01579","SJAG_03997","SJAG_00142","SJAG_03982","SJAG_02311","SJAG_00341","SJAG_04942","SJAG_02342","SJAG_02594","SJAG_00335","SJAG_00058","SJAG_00961","SJAG_00676","SJAG_04061","SJAG_02725","SJAG_02416","SJAG_02778"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[115600],"is_not":false,"summary":null,"term":"GO:0140719"},{"annotations":[110135,96295,100201,114619,94024,113264,106146,74303,64802,94773,106045,95391,96029,61478,114620,92158,116420,115984,114102,104735,115288],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031508"},{"annotations":[93132],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0090053"},{"annotations":[112332,96321,93133],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0090055"},{"annotations":[102262,99133],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090052"},{"annotations":[119702,114104,115290,117983,119987,73550,98679,106048,109952,120837,61477,117423,106147,110137,112474,94702,113201,115668,97472,93220,114206,115986,120105,113265,96297,101516,96030],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030466"},{"annotations":[115669,113202,108521,116564,93221,117424,120838,119988,90722,90779,101518,112476,98680,119703,116305,101078,114207,112644,96042,97290,117985,120107],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140727"},{"annotations":[95661,101079,111676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140185"},{"annotations":[74304,114106,115670,96031,92159,112477,115988,98681,79233,114208,119704,120839,120108,96298,110138,106049,93222,94027,60649,113266,115291,61479,101080,100202],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031509"},{"annotations":[118538],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0141005"}]},"cv_name":"biological_process","definition":"The compaction of chromatin into heterochromatin, a conformation that is refractory to transcription. Constitutive heterochromatin cannot be converted back to euchromatin, the transcriptionally-active conformation. In metazoa, this involves the methylation of histone H3K9.","definition_xrefs":["PMID:17936700"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heterochromatin formation","termid":"GO:0031507"}],"gene_count":56,"genes_by_uniquename":{"SJAG_00058":null,"SJAG_00087":null,"SJAG_00142":null,"SJAG_00160":null,"SJAG_00266":null,"SJAG_00302":null,"SJAG_00335":null,"SJAG_00341":null,"SJAG_00414":null,"SJAG_00676":null,"SJAG_00756":null,"SJAG_00769":null,"SJAG_00934":null,"SJAG_00961":null,"SJAG_01008":null,"SJAG_01062":null,"SJAG_01075":null,"SJAG_01540":null,"SJAG_01579":null,"SJAG_01599":null,"SJAG_01601":null,"SJAG_01675":null,"SJAG_02119":null,"SJAG_02311":null,"SJAG_02342":null,"SJAG_02401":null,"SJAG_02409":null,"SJAG_02416":null,"SJAG_02576":null,"SJAG_02592":null,"SJAG_02594":null,"SJAG_02621":null,"SJAG_02725":null,"SJAG_02778":null,"SJAG_02846":null,"SJAG_03042":null,"SJAG_03128":null,"SJAG_03193":null,"SJAG_03356":null,"SJAG_03543":null,"SJAG_03624":null,"SJAG_03680":null,"SJAG_03689":null,"SJAG_03844":null,"SJAG_03916":null,"SJAG_03982":null,"SJAG_03997":null,"SJAG_04030":null,"SJAG_04039":null,"SJAG_04061":null,"SJAG_04141":null,"SJAG_04186":null,"SJAG_04253":null,"SJAG_04574":null,"SJAG_04942":null,"SJAG_05247":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0006325","GO:0008150"],"is_obsolete":false,"name":"constitutive heterochromatin formation","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"constitutive heterochromatin assembly","type":"exact"}],"termid":"GO:0140719","terms_by_termid":{"GO:0030466":null,"GO:0031508":null,"GO:0031509":null,"GO:0090052":null,"GO:0090053":null,"GO:0090055":null,"GO:0140185":null,"GO:0140719":null,"GO:0140727":null,"GO:0141005":null}}


id: PBO:0053309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lin-37 DREAM MuvB core complex component","termid":"PBO:0053309"}


id: PBO:0042742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENPP pseudogene 1","termid":"PBO:0042742"}


id: PBO:0113060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the EKC/KEOPS complex; EKC/KEOPS complex is required for t6A tRNA modification and telomeric TG1-3 recombination; may have role in transcription; Cgi121p is dispensable for tRNA modification; other complex members are Bud32p, Kae1p, Pcc1p, and Gon7p; ortholog of human TPRKB","termid":"PBO:0113060"}


id: PBO:0013472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMARCAD1 family ATP-dependent DNA helicase Fft2 (predicted)","termid":"PBO:0013472"}


id: GO:0046081
data:
  {"annotated_genes":["SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[81372],"is_not":false,"summary":null,"term":"GO:0046081"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of dUTP, deoxyuridine (5'-)triphosphate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleoside triphosphate catabolic process","termid":"GO:0009213"},{"relation_name":"is_a","term_name":"pyrimidine deoxyribonucleotide catabolic process","termid":"GO:0009223"},{"relation_name":"is_a","term_name":"dUTP metabolic process","termid":"GO:0046080"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04487":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"dUTP catabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"dUTP breakdown","type":"exact"},{"name":"dUTP catabolism","type":"exact"},{"name":"dUTP degradation","type":"exact"}],"termid":"GO:0046081","terms_by_termid":{"GO:0046081":null}}


id: PBO:0029102
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_asparagine_level","termid":"PBO:0029102"}


id: FYPO:0006927
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the ratio of the nuclear volume to the total cell volume is lower than normal (the ration observed in wild type is approximately 0.076-0.089).","definition_xrefs":["PMID:31015410","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased nucleus:cytoplasm ratio","synonyms":[{"name":"decreased nuclear:cytoplasmic ratio","type":"exact"},{"name":"decreased nuclear:cytoplasmic volume ratio","type":"exact"},{"name":"decreased nucleus:cell volume ratio","type":"exact"},{"name":"decreased nucleus:cytoplasm ratio during mitotic cell cycle","type":"related"},{"name":"decreased nucleus:cytoplasm ratio during vegetative growth","type":"exact"},{"name":"decreased nucleus:cytoplasm volume ratio","type":"exact"},{"name":"reduced nucleus:cytoplasm ratio","type":"exact"}],"termid":"FYPO:0006927"}


id: PBO:0017595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit Med18","termid":"PBO:0017595"}


id: GO:0061628
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A histone reader that recognizes a histone H3 trimethylated at lysine 27.","definition_xrefs":["GOC:dph","PMID:23948251"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3 reader activity","termid":"GO:0140006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0140566"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0140566","GO:0030674","GO:0060090"],"is_obsolete":false,"name":"histone H3K27me3 reader activity","synonyms":[{"name":"H3K27me3 modified histone binding","type":"narrow"},{"name":"histone H3-K27me3 modified histone binding","type":"narrow"}],"termid":"GO:0061628"}


id: PR:G2TRP3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ymr31 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRP3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"37S ribosomal protein YMR-31, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21B10.14","synonyms":[{"name":"Spom972h-ymr31","type":"exact"}],"termid":"PR:G2TRP3"}


id: PBO:0003282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial respiratory chain complex assembly protein Cbp6 (predicted)","termid":"PBO:0003282"}


id: PBO:0082275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Anillin-like protein involved in bud-site selection; required for the axial budding pattern; required for the formation and disassembly of the double septin ring structure, and generally for septin organization; functions as a platform linking the cytokinesis tag septins to the axial landmark through its multiple domains; in vivo substrate of Cdc28p/Clb2p","termid":"PBO:0082275"}


id: PATO:0000499
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A duration quality of a process which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"duration","termid":"PATO:0001309"},{"relation_name":"is_a","term_name":"decreased process quality","termid":"PATO:0002302"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased duration","secondary_identifiers":["PATO:0000716"],"synonyms":[{"name":"decreased period","type":"exact"},{"name":"decreased time","type":"exact"},{"name":"fast time","type":"related"},{"name":"low period","type":"exact"},{"name":"shortened period","type":"exact"}],"termid":"PATO:0000499"}


id: GO:0061931
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of erythrocyte enucleation.","definition_xrefs":["PMID:25241935"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"is_a","term_name":"regulation of erythrocyte enucleation","termid":"GO:0061930"},{"relation_name":"positively_regulates","term_name":"erythrocyte enucleation","termid":"GO:0043131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of erythrocyte enucleation","termid":"GO:0061931"}


id: PBO:0074350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"somatomedin B domain containing 1, pseudogene","termid":"PBO:0074350"}


id: GO:0021824
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of cerebral cortex neuronal precursors tangentially through the cortex using interaction of the migrating cells with axons of other neurons.","definition_xrefs":["PMID:12626695","GO_REF:0000021","GOC:dgh","GOC:cls","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substrate-dependent cerebral cortex tangential migration","termid":"GO:0021825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebral cortex tangential migration using cell-axon interactions","termid":"GO:0021824"}


id: PBO:0076799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TEK receptor tyrosine kinase","termid":"PBO:0076799"}


id: MONDO:0015132
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete immunodeficiency predominantly affecting antibody production (obsolete MONDO:0015132)","secondary_identifiers":["icd11.foundation:85074116","Orphanet:101977"],"termid":"MONDO:0015132","xrefs":{"Monarch":{"xref_id":"0015132"}}}


id: GO:0003205
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of a cardiac chamber over time, from its formation to the mature structure. A cardiac chamber is an enclosed cavity within the heart.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"heart development","termid":"GO:0007507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac chamber development","termid":"GO:0003205"}


id: MONDO:0019383
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute disseminated encephalomyelitis (ADEM) is a demyelinating disorder of the central nervous system.","definition_xrefs":["Orphanet:83597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"demyelinating disease","termid":"MONDO:0002562"},{"relation_name":"is_a","term_name":"postinfectious encephalitis","termid":"MONDO:0020068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"acute disseminated encephalomyelitis","secondary_identifiers":["EFO:0007130","icd11.foundation:1390433308","NORD:727","DOID:639","MESH:D004673","SCTID:83942000","UMLS:C0014059","GARD:8639","MEDGEN:4033","NCIT:C34578","ICD9:136.9"],"synonyms":[{"name":"ADE","type":"related"},{"name":"ADEM","type":"exact"},{"name":"acute disseminated encephalitis","type":"exact"},{"name":"acute disseminated encephalomyelitis","type":"exact"},{"name":"post-infectious encephalomyelitis","type":"exact"}],"termid":"MONDO:0019383","xrefs":{"Monarch":{"xref_id":"0019383"}}}


id: PBO:0062195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily S member 1","termid":"PBO:0062195"}


id: GO:0015333
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: peptide(out) + H+(out) = peptide(in) + H+(in), up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by hydrogen ion movement.","definition_xrefs":["TC:2.A.17.-.-","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"},{"relation_name":"is_a","term_name":"peptide transmembrane transporter activity","termid":"GO:1904680"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"peptide:proton symporter activity","secondary_identifiers":["Reactome:R-HSA-427998","Reactome:R-HSA-428007"],"synonyms":[{"name":"peptide:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015333"}


id: GO:0060572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenetic process in which a bud forms from an epithelial sheet. A bud is a protrusion that forms form the sheet by localized folding.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelial fold","termid":"GO:0060571"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"morphogenesis of an epithelial bud","termid":"GO:0060572"}


id: PBO:0039407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase promoting complex subunit 10 pseudogene 1","termid":"PBO:0039407"}


id: PBO:0055298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2725","termid":"PBO:0055298"}


id: RO:HOM0000022
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Paralogy that results from a whole genome duplication event.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_paralogy_relationship_with","termid":"RO:HOM0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_ohnology_relationship_with","synonyms":[{"name":"homoeology","type":"related"},{"name":"ohnologous to","type":"exact"}],"termid":"RO:HOM0000022"}


id: BFO:0000060
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"obsolete_preceded_by","termid":"BFO:0000060"}


id: MONDO:0100201
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A vertebral column disorder caused by degeneration of intervertebral disks of the lumbar spine. One of the most common musculoskeletal disorders, it has strong genetic determinants.","definition_xrefs":["OMIM:603932"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vertebral column disorder","termid":"MONDO:0000812"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lumbar disk disease","secondary_identifiers":["UMLS:C0221775","MEDGEN:67462"],"termid":"MONDO:0100201","xrefs":{"Monarch":{"xref_id":"0100201"}}}


id: PBO:0086548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YDR278C is not an essential gene","termid":"PBO:0086548"}


id: GO:0007614
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The memory process that deals with the storage, retrieval and modification of information received a short time (up to about 30 minutes) ago. This type of memory is typically dependent on direct, transient effects of second messenger activation.","definition_xrefs":["ISBN:0582227089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"memory","termid":"GO:0007613"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"short-term memory","secondary_identifiers":["Wikipedia:Short-term_memory"],"termid":"GO:0007614"}


id: PBO:0111853
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fun thirty family","termid":"PBO:0111853"}


id: MONDO:0859374
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0006025"],"is_obsolete":false,"name":"hearing loss, autosomal recessive 120","secondary_identifiers":["OMIM:620238","UMLS:C5774309","MEDGEN:1824082"],"synonyms":[{"name":"deafness, autosomal recessive 120","type":"narrow"}],"termid":"MONDO:0859374","xrefs":{"Monarch":{"xref_id":"0859374"}}}


id: PBO:0052748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 40","termid":"PBO:0052748"}


id: MOD:01682
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces one hydrogen atom of an L-cysteine residue with one methyl group.","definition_xrefs":["Unimod:34#C","OMSSA:73"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monomethylated residue","termid":"MOD:00599"},{"relation_name":"is_a","term_name":"methylated cysteine","termid":"MOD:00660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"},{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00905","MOD:00427"],"is_obsolete":false,"name":"monomethylated L-cysteine","synonyms":[{"name":"Me1Cys","type":"exact"},{"name":"Methyl","type":"related"},{"name":"Methylation","type":"related"},{"name":"methylc","type":"exact"}],"termid":"MOD:01682"}


id: GO:0016747
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id: GO:2000206
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id: FYPO:0007688
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id: PBO:0081837
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id: PBO:0080765
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id: GO:0043354
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id: PBO:0064625
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id: MONDO:0008288
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id: PBO:0049611
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id: PBO:0071293
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id: PBO:0049109
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id: PBO:0040936
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id: GO:0003393
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id: MONDO:0015872
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id: GO:1904174
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone demethylase activity (H3-K4 specific).","definition_xrefs":["GO_REF:0000059","GOC:dph","GOC:TermGenie","PMID:24843136"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone demethylase activity (H3-K4 specific) (obsolete GO:1904174)","synonyms":[{"name":"down regulation of histone demethylase activity (H3-K4 specific)","type":"exact"},{"name":"down-regulation of histone demethylase activity (H3-K4 specific)","type":"exact"},{"name":"downregulation of histone demethylase activity (H3-K4 specific)","type":"exact"},{"name":"inhibition of histone demethylase activity (H3-K4 specific)","type":"narrow"}],"termid":"GO:1904174"}


id: GO:0140070
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the energy-independent facilitated diffusion of hydrogen peroxide through a transmembrane aqueous pore or channel.","definition_xrefs":["PMID:27256569","PMID:23541115"],"direct_ancestors":[{"relation_name":"is_a","term_name":"channel activity","termid":"GO:0015267"},{"relation_name":"is_a","term_name":"inorganic molecular entity transmembrane transporter activity","termid":"GO:0015318"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"hydrogen peroxide channel activity","synonyms":[{"name":"hydrogen peroxide transmembrane transporter activity","type":"related"}],"termid":"GO:0140070"}


id: GO:0002301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a precursor cell type acquires the specialized features of a CD4-positive, alpha-beta intraepithelial T cell. Intraepithelial T cells are found among epithelial cells in mucosal areas and have distinct phenotypes and developmental pathways.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-beta intraepithelial T cell differentiation","termid":"GO:0002299"},{"relation_name":"is_a","term_name":"CD4-positive, alpha-beta T cell differentiation","termid":"GO:0043367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD4-positive, alpha-beta intraepithelial T cell differentiation","synonyms":[{"name":"CD4-positive, alpha-beta intraepithelial T cell development","type":"related"},{"name":"CD4-positive, alpha-beta intraepithelial T lymphocyte differentiation","type":"exact"},{"name":"CD4-positive, alpha-beta intraepithelial T-cell differentiation","type":"exact"},{"name":"CD4-positive, alpha-beta intraepithelial T-lymphocyte differentiation","type":"exact"}],"termid":"GO:0002301"}


id: MONDO:0003851
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare type of teratoma that arises from the ovary and resembles a malformed fetus.","definition_xrefs":["NCIT:C39996"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mature ovarian teratoma","termid":"MONDO:0003820"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ovarian fetiform teratoma","secondary_identifiers":["UMLS:C1518715","DOID:6314","MEDGEN:276666"],"synonyms":[{"name":"homunculus","type":"exact"},{"name":"ovarian fetiform teratoma","type":"exact"}],"termid":"MONDO:0003851","xrefs":{"Monarch":{"xref_id":"0003851"}}}


id: PBO:0052654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 22","termid":"PBO:0052654"}


id: PBO:0052071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"katanin catalytic subunit A1","termid":"PBO:0052071"}


id: PBO:0053200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphocyte expansion molecule","termid":"PBO:0053200"}


id: GO:1901036
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of L-glutamine import into cell.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transmembrane transport","termid":"GO:0034764"},{"relation_name":"is_a","term_name":"regulation of L-glutamine import across plasma membrane","termid":"GO:1901034"},{"relation_name":"is_a","term_name":"positive regulation of glutamine transport","termid":"GO:2000487"},{"relation_name":"positively_regulates","term_name":"L-glutamine import across plasma membrane","termid":"GO:1903803"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of L-glutamine import across plasma membrane","synonyms":[{"name":"activation of L-glutamine import","type":"narrow"},{"name":"activation of L-glutamine uptake","type":"exact"},{"name":"positive regulation of L-glutamine import","type":"broad"},{"name":"positive regulation of L-glutamine uptake","type":"exact"},{"name":"up regulation of L-glutamine import","type":"exact"},{"name":"up regulation of L-glutamine uptake","type":"exact"},{"name":"up-regulation of L-glutamine import","type":"exact"},{"name":"up-regulation of L-glutamine uptake","type":"exact"},{"name":"upregulation of L-glutamine import","type":"exact"},{"name":"upregulation of L-glutamine uptake","type":"exact"}],"termid":"GO:1901036"}


id: MONDO:0017197
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Osteopathia striata-pigmentary dermopathy-white forelock syndrome is characterized by the association of osteopathia striata (longitudinal striations through most of the long bones) with a macular, hyperpigmented dermopathy and a white forelock.","definition_xrefs":["Orphanet:2779"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with increased bone density (obsolete MONDO:0019703)","termid":"MONDO:0019703"},{"relation_name":"is_a","term_name":"hyperpigmentation of the skin","termid":"MONDO:0019289"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"osteopathia striata-pigmentary dermopathy-white forelock syndrome","secondary_identifiers":["UMLS:C2931096","MESH:C536054","GARD:5562","MEDGEN:419711"],"synonyms":[{"name":"Whyte Murphy syndrome","type":"related"},{"name":"Whyte-Murphy syndrome","type":"exact"},{"name":"osteopathia striata associated with familial dermopathy and white forelock","type":"related"},{"name":"osteopathia striata with pigmentary dermopathy including white forelock","type":"related"}],"termid":"MONDO:0017197","xrefs":{"Monarch":{"xref_id":"0017197"}}}


id: GO:0042323
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the duration or quality of non-rapid eye movement (NREM) sleep.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of circadian sleep/wake cycle, sleep","termid":"GO:0042321"},{"relation_name":"is_a","term_name":"regulation of circadian sleep/wake cycle, non-REM sleep","termid":"GO:0045188"},{"relation_name":"negatively_regulates","term_name":"circadian sleep/wake cycle, non-REM sleep","termid":"GO:0042748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of circadian sleep/wake cycle, non-REM sleep","synonyms":[{"name":"down regulation of circadian sleep/wake cycle, non-REM sleep","type":"exact"},{"name":"down-regulation of circadian sleep/wake cycle, non-REM sleep","type":"exact"},{"name":"downregulation of circadian sleep/wake cycle, non-REM sleep","type":"exact"},{"name":"inhibition of circadian sleep/wake cycle, non-REM sleep","type":"narrow"},{"name":"negative regulation of non-REM sleep","type":"exact"}],"termid":"GO:0042323"}


id: PBO:0111854
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-C2C2 type","termid":"PBO:0111854"}


id: PBO:0050458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOMER3 antisense RNA 1","termid":"PBO:0050458"}


id: RO:0002400
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"p has direct input c iff c is a participant in p, c is present at the start of p, and the state of c is modified during p.","direct_ancestors":[{"relation_name":"is_a","term_name":"has_input","termid":"RO:0002233"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_direct_input","termid":"RO:0002400"}


id: GO:0014070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus.","definition_xrefs":["GOC:ef"],"gene_count":0,"genotype_count":0,"name":"obsolete response to organic cyclic compound (obsolete GO:0014070)","synonyms":[{"name":"response to organic cyclic substance","type":"exact"}],"termid":"GO:0014070"}


id: PBO:0013826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy protein Atg16","termid":"PBO:0013826"}


id: GO:0048289
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The switching of activated B cells from IgM biosynthesis to IgE biosynthesis, accomplished through a recombination process involving an intrachromosomal deletion between switch regions that reside 5' of the IgM and IgE constant region gene segments in the immunoglobulin heavy chain locus.","definition_xrefs":["PMID:2113175","ISBN:0781735149","PMID:9186655","PMID:12370374"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotype switching","termid":"GO:0045190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006310"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006259","GO:0006310"],"is_obsolete":false,"name":"isotype switching to IgE isotypes","synonyms":[{"name":"class switch recombination to IgE isotypes","type":"exact"},{"name":"class switching to IgE isotypes","type":"exact"},{"name":"isotype switch recombination to IgE isotypes","type":"exact"}],"termid":"GO:0048289"}


id: PBO:0066465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication factor C subunit 3","termid":"PBO:0066465"}


id: MONDO:0006716
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Coagulation of blood in any of the coronary vessels. The presence of a blood clot (thrombus) often leads to myocardial infarction.","definition_xrefs":["MESH:D003328"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thrombotic disease","termid":"MONDO:0000831"},{"relation_name":"is_a","term_name":"coronary artery disorder","termid":"MONDO:0005010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"coronary thrombosis","secondary_identifiers":["ICD10CM:I21","DOID:11847","MedDRA:10011108","EFO:1000883","SCTID:398274000","UMLS:C0010072","MEDGEN:3625","ICD10CM:I22"],"synonyms":[{"name":"coronary artery thrombosis","type":"exact"},{"name":"coronary vessel thrombotic disease","type":"exact"},{"name":"thrombotic disease of coronary vessel","type":"exact"}],"termid":"MONDO:0006716","xrefs":{"Monarch":{"xref_id":"0006716"}}}


id: MONDO:0700214
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Herpesviridae infectious disease that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral infectious disease, non-human animal","termid":"MONDO:0700053"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Herpesviridae infectious disease, non-human animal","termid":"MONDO:0700214","xrefs":{"Monarch":{"xref_id":"0700214"}}}


id: PBO:0002131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rhophilin-2 homolog (predicted)","termid":"PBO:0002131"}


id: GO:0004203
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete caspase-4 activity (obsolete GO:0004203)","synonyms":[{"name":"caspase-4 activity","type":"exact"}],"termid":"GO:0004203"}


id: PBO:0047225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 228 member A","termid":"PBO:0047225"}


id: GO:0097622
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The successive addition of amino acid residues to a nascent polypeptide chain, proceeding through regions of multiple repeated proline codons, during protein biosynthesis in the cytoplasm.","definition_xrefs":["GOC:mcc","PMID:24923804"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic translational elongation","termid":"GO:0002182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0002181"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0002181","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"cytoplasmic translational elongation through polyproline stretches","termid":"GO:0097622"}


id: MONDO:0027696
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"poisoning","termid":"MONDO:0029000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"voriconazole toxicity","secondary_identifiers":["Orphanet:240921"],"termid":"MONDO:0027696","xrefs":{"Monarch":{"xref_id":"0027696"}}}


id: MONDO:0007158
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Distal arthrogryposis type 5 is an inherited developmental defect syndrome characterized by multiple congenital contractures of limbs, without primary neurologic and/or muscle disease that affects limb function, and ocular anomalies (ptosis, external ophtalmoplegia and/or strabismus). Intelligence is normal.","definition_xrefs":["Orphanet:1154"],"direct_ancestors":[{"relation_name":"is_a","term_name":"distal arthrogryposis","termid":"MONDO:0019942"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arthrogryposis- oculomotor limitation-electroretinal anomalies syndrome","secondary_identifiers":["SCTID:715217004","MEDGEN:350678","GARD:4047","DOID:0111608","OMIM:108145","UMLS:C1862472"],"synonyms":[{"name":"Arthogryposis with oculomotor limitation and electroretinal abnormalities","type":"related"},{"name":"DA5","type":"related"},{"name":"arthrogryposis ophthalmoplegia retinopathy","type":"related"},{"name":"arthrogryposis with oculomotor limitation and electroretinal abnormalities","type":"related"},{"name":"arthrogryposis, distal, type 2B","type":"related"},{"name":"arthrogryposis, distal, type 5","type":"related"},{"name":"arthrogryposis- oculomotor limitation-electroretinal anomalies syndrome","type":"exact"},{"name":"arthrogryposis-oculomotor limitation-electroretinal anomalies syndrome","type":"related"},{"name":"distal arthrogryposis type 5","type":"exact"},{"name":"distal arthrogryposis type IIB","type":"exact"},{"name":"distal arthrogryposis with ophthalmoplegia","type":"exact"},{"name":"oculomelic amyoplasia","type":"exact"}],"termid":"MONDO:0007158","xrefs":{"Monarch":{"xref_id":"0007158"}}}


id: GO:1901411
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of tetrapyrrole biosynthetic process from glutamate.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of tetrapyrrole biosynthetic process from glutamate","termid":"GO:1901410"},{"relation_name":"is_a","term_name":"negative regulation of tetrapyrrole biosynthetic process","termid":"GO:1901464"},{"relation_name":"is_a","term_name":"negative regulation of glutamate metabolic process","termid":"GO:2000212"},{"relation_name":"negatively_regulates","term_name":"tetrapyrrole biosynthetic process from glutamate","termid":"GO:0033526"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0033013"},{"rel_name":"regulates","termid":"GO:0033013"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0033013","GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"negative regulation of tetrapyrrole biosynthetic process from glutamate","synonyms":[{"name":"down regulation of tetrapyrrole anabolism from glutamate","type":"exact"},{"name":"down regulation of tetrapyrrole biosynthesis from glutamate","type":"exact"},{"name":"down regulation of tetrapyrrole biosynthetic process from glutamate","type":"exact"},{"name":"down regulation of tetrapyrrole formation from glutamate","type":"exact"},{"name":"down regulation of tetrapyrrole synthesis from glutamate","type":"exact"},{"name":"down-regulation of tetrapyrrole anabolism from glutamate","type":"exact"},{"name":"down-regulation of tetrapyrrole biosynthesis from glutamate","type":"exact"},{"name":"down-regulation of tetrapyrrole biosynthetic process from glutamate","type":"exact"},{"name":"down-regulation of tetrapyrrole formation from glutamate","type":"exact"},{"name":"down-regulation of tetrapyrrole synthesis from glutamate","type":"exact"},{"name":"downregulation of tetrapyrrole anabolism from glutamate","type":"exact"},{"name":"downregulation of tetrapyrrole biosynthesis from glutamate","type":"exact"},{"name":"downregulation of tetrapyrrole biosynthetic process from glutamate","type":"exact"},{"name":"downregulation of tetrapyrrole formation from glutamate","type":"exact"},{"name":"downregulation of tetrapyrrole synthesis from glutamate","type":"exact"},{"name":"inhibition of tetrapyrrole anabolism from glutamate","type":"exact"},{"name":"inhibition of tetrapyrrole biosynthesis from glutamate","type":"exact"},{"name":"inhibition of tetrapyrrole biosynthetic process from glutamate","type":"narrow"},{"name":"inhibition of tetrapyrrole formation from glutamate","type":"exact"},{"name":"inhibition of tetrapyrrole synthesis from glutamate","type":"exact"},{"name":"negative regulation of tetrapyrrole anabolism from glutamate","type":"exact"},{"name":"negative regulation of tetrapyrrole biosynthesis from glutamate","type":"exact"},{"name":"negative regulation of tetrapyrrole formation from glutamate","type":"exact"},{"name":"negative regulation of tetrapyrrole synthesis from glutamate","type":"exact"}],"termid":"GO:1901411"}


id: MONDO:0009206
data:
  {"annotated_genes":["SJAG_02839"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88242],"is_not":false,"summary":null,"term":"MONDO:0009206"}]},"cv_name":"mondo","definition":"Any combined deficiency of factor V and factor VIII in which the cause of the disease is a mutation in the LMAN1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"combined deficiency of factor V and factor VIII","termid":"MONDO:0018175"},{"relation_name":"is_a","term_name":"inherited blood coagulation disorder","termid":"MONDO:0021181"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02839":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"factor V and factor VIII, combined deficiency of, type 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:18630","OMIM:227300","SCTID:84048006","MEDGEN:1637212","UMLS:C4551981"],"synonyms":[{"name":"F5F8D1","type":"related"},{"name":"FMFD 1","type":"related"},{"name":"LMAN1 combined deficiency of factor V and factor VIII","type":"exact"},{"name":"combined deficiency of factor V and factor VIII caused by mutation in LMAN1","type":"exact"},{"name":"combined factor V and VIII deficiency","type":"exact"},{"name":"factor 5 and Factor VIII, combined deficiency of, 1","type":"exact"},{"name":"factor V and factor VIII, combined deficiency of, 1","type":"related"},{"name":"factor V and factor VIII, combined deficiency of, type 1","type":"exact"},{"name":"familial multiple coagulation Factor deficiency 1","type":"related"},{"name":"multiple coagulation Factor deficiency 1","type":"related"}],"termid":"MONDO:0009206","terms_by_termid":{"MONDO:0009206":null},"xrefs":{"Monarch":{"xref_id":"0009206"}}}


id: PBO:0054122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1488","termid":"PBO:0054122"}


id: FYPO:0002051
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetative cell is swollen, elongated, has no septum, and contains more than one nucleus. In a swollen cell, both length and diameter may be greater than normal, although the cell is only considered elongated if the length:diameter ratio is also greater than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"swollen elongated cell","termid":"FYPO:0001429"},{"relation_name":"is_a","term_name":"elongated multinucleate aseptate vegetative cell","termid":"FYPO:0002049"},{"relation_name":"is_a","term_name":"swollen multinucleate vegetative cell","termid":"FYPO:0004257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000005","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000631","FYPO:0000032"],"is_obsolete":false,"name":"swollen elongated multinucleate aseptate vegetative cell","synonyms":[{"name":"elongated multinucleate aseptate vegetative cell with increased cell volume","type":"exact"},{"name":"enlarged elongated multinucleate aseptate vegetative cell","type":"related"},{"name":"large elongated multinucleate aseptate vegetative cell","type":"related"},{"name":"swollen elongated multinucleate aseptate cell during vegetative growth","type":"exact"},{"name":"swollen elongated multinucleate aseptate vegetative cell during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002051"}


id: MONDO:0000225
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of ehrlichiosis associated with Ehrlichia chaffeensis, an obligate intracellular pathogen affecting monocytes and macrophages.","definition_xrefs":["Wikipedia:Human_monocytotropic_ehrlichiosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte disorder","termid":"MONDO:0004805"},{"relation_name":"is_a","term_name":"ehrlichiosis","termid":"MONDO:0016003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"human monocytic ehrlichiosis","secondary_identifiers":["NORD:1254","SCTID:359747000","MEDGEN:1826179","GARD:72","UMLS:C3844799","DOID:0050026","ICD9:082.41"],"synonyms":[{"name":"HME","type":"related"},{"name":"Human Monocytic Ehrlichiosis (HME)","type":"exact"},{"name":"Human ehrlichial infection, human monocytic type","type":"related"},{"name":"ehrlichiosis chafeensis","type":"related"},{"name":"human ehrlichiosis caused by Ehrlichia chaffeensis","type":"related"},{"name":"human ehrlichiosis due to Ehrlichia chaffeensis","type":"exact"}],"termid":"MONDO:0000225","xrefs":{"Monarch":{"xref_id":"0000225"}}}


id: MONDO:0958188
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"C1Q deficiency","termid":"MONDO:0013343"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"C1Q deficiency 3","secondary_identifiers":["UMLS:C5830423","MEDGEN:1841059","OMIM:620322"],"termid":"MONDO:0958188","xrefs":{"Monarch":{"xref_id":"0958188"}}}


id: PBO:0054756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2167","termid":"PBO:0054756"}


id: PBO:0044280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-X-C motif chemokine receptor 3","termid":"PBO:0044280"}


id: SO:0001853
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non-palindromic sequence found in the promoters of genes whose expression is regulated in response to androgen.","definition_xrefs":["PMID:21796522"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA_motif","termid":"SO:0000713"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"androgen_response_element","synonyms":[{"name":"ARE","type":"exact"},{"name":"androgen response element","type":"exact"}],"termid":"SO:0001853"}


id: PBO:0090140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Cdk11","termid":"PBO:0090140"}


id: GO:0102892
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: UDP-alpha-D-glucose + betanidin = H+ + betanin + UDP.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete betanidin 5-O-glucosyltransferase activity (obsolete GO:0102892)","termid":"GO:0102892"}


id: PBO:0039154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylate kinase 4 pseudogene 1","termid":"PBO:0039154"}


id: PBO:0026841
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_duration_of_protein_phosphorylation_during_cellular_response_to_hydroxyurea","termid":"PBO:0026841"}


id: PBO:0069291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 547, pseudogene","termid":"PBO:0069291"}


id: GO:0033066
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A DNA recombinase mediator complex that contains the Rad51 paralogs RAD51B and RAD51C, or orthologs thereof.","definition_xrefs":["PMID:16093548","PMID:17114795","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA recombinase mediator complex","termid":"GO:0033061"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"Rad51B-Rad51C complex","synonyms":[{"name":"BC complex","type":"exact"}],"termid":"GO:0033066"}


id: FYPO:0005114
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the endosome(s) is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000257","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to endosome","synonyms":[{"name":"normal protein localisation to endosome","type":"exact"},{"name":"normal protein localization to endosome during mitotic cell cycle","type":"related"},{"name":"normal protein localization to endosome during vegetative growth","type":"exact"},{"name":"normal protein targeting to endosome","type":"related"}],"termid":"FYPO:0005114"}


id: GO:0102274
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an S-substituted glutathione + H2O = glycine + S-substituted gamma-glutamyl-L-cysteine. Patricipates in glutathione-mediated detoxification.","definition_xrefs":["RHEA:60448"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metallocarboxypeptidase activity","termid":"GO:0004181"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0140096","GO:0008233"],"is_obsolete":false,"name":"glutathione S-conjugate carboxypeptidase activity","secondary_identifiers":["EC:3.4.17.25","MetaCyc:RXN-12532"],"termid":"GO:0102274"}


id: PBO:0067451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 574, pseudogene","termid":"PBO:0067451"}


id: SO:0002019
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant where at least one base in the start codon is changed, but the start remains.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"initiator_codon_variant","termid":"SO:0001582"},{"relation_name":"is_a","term_name":"synonymous_variant","termid":"SO:0001819"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"start_retained_variant","synonyms":[{"name":"snpEff:SYNONYMOUS_START","type":"exact"}],"termid":"SO:0002019"}


id: GO:0038115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of the C-C chemokine CCL19 to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:15059845","GOC:nhn","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine-mediated signaling pathway","termid":"GO:0070098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"chemokine (C-C motif) ligand 19 signaling pathway","synonyms":[{"name":"C-C chemokine receptor type 7 signaling pathway","type":"related"},{"name":"CCL19-mediated signaling pathway","type":"exact"},{"name":"chemokine (C-C motif) ligand 19 signalling pathway","type":"exact"}],"termid":"GO:0038115"}


id: PBO:0072037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 7","termid":"PBO:0072037"}


id: GO:0052822
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: DNA containing 3-methylguanine + H2O = DNA with abasic site + 3-methylguanine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 3-methylguanine and the deoxyribose sugar to remove the 3-methylguanine, leaving an abasic site.","definition_xrefs":["PMID:10872450","GOC:elh","PMID:9224623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-3-methylbase glycosylase activity","termid":"GO:0043733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140097","GO:0016798","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"DNA-3-methylguanine glycosylase activity","termid":"GO:0052822"}


id: PR:O94686
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl4302 gene.","definition_xrefs":["UniProtKB:O94686","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L43-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC83.02c","synonyms":[{"name":"L37B (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rpl4302","type":"exact"}],"termid":"PR:O94686"}


id: PBO:0079625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 N like (gene/pseudogene)","termid":"PBO:0079625"}


id: PBO:0108597
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-indirectly_positively_regulates","termid":"PBO:0108597"}


id: PBO:0050326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 28","termid":"PBO:0050326"}


id: MONDO:0015452
data:
  {"annotated_genes":["SJAG_00739","SJAG_02589","SJAG_03576","SJAG_02254","SJAG_02447","SJAG_04213","SJAG_01111","SJAG_04755","SJAG_05313"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87893],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007617"},{"annotations":[88627],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032912"},{"annotations":[87535],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014838"},{"annotations":[88027,88026],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032702"},{"annotations":[88201],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013819"},{"annotations":[88202,88203],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013820"},{"annotations":[88204,88205],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013821"}]},"cv_name":"mondo","definition":"Coffin-Siris syndrome (CSS) is a rare congenital multi-systemic genetic disorder characterized by aplasia or hypoplasia of the distal phalanx or nail of the fifth digit, developmental delay, intellectual disability, coarse facial features, and other variable clinical manifestations.","definition_xrefs":["Orphanet:1465"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"congenital limb malformation","termid":"MONDO:0019054"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"skeletal system disorder","termid":"MONDO:0005172"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00739":null,"SJAG_01111":null,"SJAG_02254":null,"SJAG_02447":null,"SJAG_02589":null,"SJAG_03576":null,"SJAG_04213":null,"SJAG_04755":null,"SJAG_05313":null},"genotype_count":0,"is_obsolete":false,"name":"Coffin-Siris syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:1925","GARD:6124","icd11.foundation:734451870","ICD9:759.89","NCIT:C35321","NANDO:2200977","NANDO:1200670","OMIMPS:135900","MESH:C536436","SCTID:10007009","UMLS:C0265338","NORD:984","MEDGEN:75565"],"synonyms":[{"name":"CSS","type":"exact"},{"name":"Coffin-Siris syndrome","type":"exact"},{"name":"dwarfism-onychodysplasia","type":"exact"},{"name":"fifth digit syndrome","type":"exact"},{"name":"intellectual disability with absent fifth fingernail and terminal phalanx","type":"related"},{"name":"short stature-onychodysplasia.","type":"exact"}],"termid":"MONDO:0015452","terms_by_termid":{"MONDO:0007617":null,"MONDO:0013819":null,"MONDO:0013820":null,"MONDO:0013821":null,"MONDO:0014838":null,"MONDO:0032702":null,"MONDO:0032912":null},"xrefs":{"Monarch":{"xref_id":"0015452"}}}


id: PR:O42901
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC119.09c gene.","definition_xrefs":["UniProtKB:O42901","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C119.09c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC119.09c","synonyms":[{"name":"Spom972h-SPBC119.09c","type":"exact"}],"termid":"PR:O42901"}


id: MONDO:1011978
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"vision disorder, non-human animal","termid":"MONDO:1011367"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"central retinal degeneration, non-human animal","secondary_identifiers":["OMIA:000867"],"termid":"MONDO:1011978","xrefs":{"Monarch":{"xref_id":"1011978"}}}


id: MONDO:0035707
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"blepharophimosis-intellectual disability syndrome/genitopatellar overlap syndrome","secondary_identifiers":["Orphanet:597746","GARD:22398","MEDGEN:1842711","UMLS:C5681588"],"termid":"MONDO:0035707","xrefs":{"Monarch":{"xref_id":"0035707"}}}


id: GO:0033728
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: protochlorophyllide a + NADP+ = 3,8-divinyl protochlorophyllide a + NADPH + H+, and chlorophyllide a + NADP+ = 3,8-divinyl chlorophyllide a + NADPH + H+.","definition_xrefs":["EC:1.3.1.75"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity","synonyms":[{"name":"3,8-divinyl protochlorophyllide a 8-vinyl reductase activity","type":"exact"},{"name":"3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activit","type":"exact"},{"name":"4VCR","type":"related"},{"name":"[4-vinyl]chlorophyllide a reductase activity","type":"related"},{"name":"chlorophyllide-a:NADP+ oxidoreductase activity","type":"related"}],"termid":"GO:0033728"}


id: PBO:0091751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal cell surface protein, Kre9/Knh1 family, Knh4","termid":"PBO:0091751"}


id: PBO:0043384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clavesin 2","termid":"PBO:0043384"}


id: SO:0000651
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Cytosolic LSU rRNA is an RNA component of the large subunit of cytosolic ribosomes.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"rRNA_large_subunit_primary_transcript","termid":"SO:0000325"},{"relation_name":"is_a","term_name":"cytosolic_rRNA","termid":"SO:0002343"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic_LSU_rRNA","synonyms":[{"name":"cytosolic LSU RNA","type":"exact"},{"name":"cytosolic LSU rRNA","type":"exact"},{"name":"cytosolic large subunit rRNA","type":"exact"}],"termid":"SO:0000651"}


id: GO:0120272
data:
  {"annotated_genes":["SJAG_02723"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108627],"is_not":false,"summary":null,"term":"GO:0120272"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of degradation of meiosis-specific nuclear transcribed transcripts during vegetative growth, by a mechanism that requires determinant of selective removal (DSR) sequences in the targeted mRNAs and involves a YTH family protein.","definition_xrefs":["PMID:24920274","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mRNA catabolic process","termid":"GO:0061014"},{"relation_name":"is_a","term_name":"regulation of nuclear mRNA surveillance of meiosis-specific transcripts","termid":"GO:0120270"},{"relation_name":"positively_regulates","term_name":"nuclear mRNA surveillance of meiosis-specific transcripts","termid":"GO:0033621"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02723":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0016071","GO:0010467"],"is_obsolete":false,"name":"positive regulation of nuclear mRNA surveillance of meiosis-specific transcripts","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts","type":"exact"}],"termid":"GO:0120272","terms_by_termid":{"GO:0120272":null}}


id: PBO:0075690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"steroid 5 alpha-reductase 1 pseudogene 1","termid":"PBO:0075690"}


id: PBO:0079959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP8 pseudogene 1","termid":"PBO:0079959"}


id: PBO:0113417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding protein involved in asymmetric localization of ASH1 mRNA; represses translation of ASH1 mRNA, an effect reversed by Yck1p-dependent phosphoryation; regulates telomere position effect and length; similarity to hnRNP-K; increases mRNA stability by binding (CNN)n repeat elements","termid":"PBO:0113417"}


id: GO:0009763
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of C4 photosynthesis, as it occurs in plants in which the enzyme decarboxylating C4 acids in the bundle sheath is NAD-malic enzyme.","definition_xrefs":["PMID:11788762"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C4 photosynthesis","termid":"GO:0009760"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"NAD-malic enzyme C4 photosynthesis","termid":"GO:0009763"}


id: PBO:0060650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NCOA7 antisense RNA 1","termid":"PBO:0060650"}


id: PR:Q9URZ2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC869.09 gene.","definition_xrefs":["UniProtKB:Q9URZ2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0654 protein C869.09 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC869.09","synonyms":[{"name":"Spom972h-SPAC869.09","type":"exact"}],"termid":"PR:Q9URZ2"}


id: GO:0034949
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1,1-dichloroethane + 2 H+ + 2 e- = chloroethane + HCl.","definition_xrefs":["UM-BBD_reactionID:r1008"],"gene_count":0,"genotype_count":0,"name":"obsolete 1,1-dichloroethane reductive dehalogenase activity (obsolete GO:0034949)","termid":"GO:0034949"}


id: PBO:0057846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3158-2","termid":"PBO:0057846"}


id: GO:0072302
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of metanephric glomerular mesangial cell proliferation.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of glomerular mesangial cell proliferation","termid":"GO:0072125"},{"relation_name":"is_a","term_name":"regulation of metanephric glomerular mesangial cell proliferation","termid":"GO:0072301"},{"relation_name":"negatively_regulates","term_name":"metanephric glomerular mesangial cell proliferation involved in metanephros development","termid":"GO:0072262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of metanephric glomerular mesangial cell proliferation","termid":"GO:0072302"}


id: PBO:0002818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Sck2","termid":"PBO:0002818"}


id: FYPO:0005763
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which replication fork pausing occurs to a greater extent than normal, including at sites where forks do not normally pause.","definition_xrefs":["PMID:25471935","PomBase:mah","PMID:27611590"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased rate of mitotic DNA replication elongation","termid":"FYPO:0003923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000293","FYPO:0000631"],"is_obsolete":false,"name":"increased replication fork pausing","synonyms":[{"name":"increased replication fork pausing during mitotic cell cycle","type":"related"},{"name":"increased replication fork pausing during vegetative growth","type":"exact"}],"termid":"FYPO:0005763"}


id: GO:0018497
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-chloro-2,2-bis(4-chlorophenyl)ethene + 2 H+ + 2 e- = 1-chloro-2,2-bis(4-chlorophenyl)ethane. 1-chloro-2,2-bis(4-chlorophenyl)ethene is also known as DDMU; 1-chloro-2,2-bis(4-chlorophenyl)ethane is also known as DDMS.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-chloro-2,2-bis(4-chlorophenyl)ethane dehydrogenase activity (obsolete GO:0018497)","synonyms":[{"name":"DDMS dehydrogenase activity","type":"exact"}],"termid":"GO:0018497"}


id: PR:Q09887
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cationic amino acid transporter 4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04711","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized amino-acid permease C584.13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC584.13","secondary_identifiers":["UniProtKB:Q09887"],"synonyms":[{"name":"Spom972h-SLC7A4","type":"exact"}],"termid":"PR:Q09887"}


id: PBO:0058642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6771","termid":"PBO:0058642"}


id: PBO:0059284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L41","termid":"PBO:0059284"}


id: PBO:0068900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 142, pseudogene","termid":"PBO:0068900"}


id: PBO:0068994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 238, pseudogene","termid":"PBO:0068994"}


id: GO:0007149
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mcc"],"gene_count":0,"genotype_count":0,"name":"obsolete colony morphology (obsolete GO:0007149)","synonyms":[{"name":"colony morphology","type":"exact"}],"termid":"GO:0007149"}


id: GO:2001161
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K79 methylation.","definition_xrefs":["PMID:12876294"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone H3-K79 methylation (obsolete GO:2001161)","synonyms":[{"name":"negative regulation of histone H3 K79 methylation","type":"exact"},{"name":"negative regulation of histone H3K79me","type":"exact"},{"name":"negative regulation of histone lysine H3 K79 methylation","type":"exact"}],"termid":"GO:2001161"}


id: PR:Q1MTQ9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 60S ribosome subunit biogenesis protein NIP7 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR23415:SF4","OMA:SCHPO04205"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosome subunit biogenesis protein nip7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC320.11c","secondary_identifiers":["UniProtKB:Q1MTQ9"],"synonyms":[{"name":"Spom972h-NIP7","type":"exact"}],"termid":"PR:Q1MTQ9"}


id: MONDO:0002771
data:
  {"annotated_genes":["SJAG_03125","SJAG_05979","SJAG_00566","SJAG_01836","SJAG_03855","SJAG_02194"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86965],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0800029"},{"annotations":[88485],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957261"},{"annotations":[88484],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957263"},{"annotations":[88250],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957294"},{"annotations":[88081],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013878"},{"annotations":[87207],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014612"},{"annotations":[89071],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030690"}]},"cv_name":"mondo","definition":"Chronic progressive interstitial lung disorder characterized by the replacement of the lung tissue by connective tissue, leading to progressive dyspnea, respiratory failure, or right heart failure. Causes include chronic inflammatory processes, exposure to environmental irritants, radiation therapy, autoimmune disorders, certain drugs, or it may be idiopathic (no identifiable cause).","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interstitial lung disease","termid":"MONDO:0015925"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00566":null,"SJAG_01836":null,"SJAG_02194":null,"SJAG_03125":null,"SJAG_03855":null,"SJAG_05979":null},"genotype_count":0,"is_obsolete":false,"name":"pulmonary fibrosis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:D011658","UMLS:C0034069","MEDGEN:11028","NCIT:C26869","SCTID:51615001","DOID:3770","EFO:0009448"],"synonyms":[{"name":"fibrosis of lung","type":"exact"},{"name":"pulmonary interstitial fibrosis","type":"exact"}],"termid":"MONDO:0002771","terms_by_termid":{"MONDO:0013878":null,"MONDO:0014612":null,"MONDO:0030690":null,"MONDO:0800029":null,"MONDO:0957261":null,"MONDO:0957263":null,"MONDO:0957294":null},"xrefs":{"Monarch":{"xref_id":"0002771"}}}


id: GO:0003824
data:
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