# genes

id: SJAG_03851
data:
  {"cv_annotations":{"biological_process":[{"annotations":[74995],"is_not":false,"summary":null,"term":"GO:0000045"},{"annotations":[74994],"is_not":false,"summary":null,"term":"GO:0061723"},{"annotations":[110626],"is_not":false,"summary":null,"term":"GO:0120010"},{"annotations":[110628],"is_not":false,"summary":null,"term":"GO:0000423"},{"annotations":[74997],"is_not":false,"summary":null,"term":"GO:0000425"},{"annotations":[74989],"is_not":false,"summary":null,"term":"GO:0034727"},{"annotations":[74993],"is_not":false,"summary":null,"term":"GO:0061709"}],"cellular_component":[{"annotations":[74990],"is_not":false,"summary":null,"term":"GO:0061908"},{"annotations":[61577],"is_not":false,"summary":null,"term":"GO:0034045"}],"molecular_function":[{"annotations":[110632],"is_not":false,"summary":null,"term":"GO:0120013"},{"annotations":[74992],"is_not":false,"summary":null,"term":"GO:0032266"},{"annotations":[74988],"is_not":false,"summary":null,"term":"GO:0043495"}]},"dbxrefs":["InterPro:IPR026885","GOA:B6K582","InterPro:IPR015412","EnsemblGenomes-Gn:SJAG_03851","InterPro:IPR026849","UniProtKB/TrEMBL:B6K582","EnsemblGenomes-Tr:EEB08686","InterPro:IPR026854","InterPro:IPR026886"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":268,"start":244}},{"range":{"end":1611,"start":1588}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"ssb1","uniquename":"SJAG_03855"},{"name":"mik1","uniquename":"SJAG_03854"},{"name":"msi2","uniquename":"SJAG_03853"},{"name":"gnd1","uniquename":"SJAG_03852"},{"uniquename":"SJAG_06268"},{"name":"atg2","uniquename":"SJAG_03851"},{"name":"pmr1","uniquename":"SJAG_03850"},{"name":"hub1","uniquename":"SJAG_03849"},{"name":"pep12","uniquename":"SJAG_03848"},{"name":"gle1","uniquename":"SJAG_03847"},{"name":"bms1","uniquename":"SJAG_03846"}],"genes_by_uniquename":{"HGNC:20187":null,"HGNC:29028":null,"SJAG_03851":null,"SPBC31E1.01c":null,"YNL242W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Autophagy-related protein 2","id":"PF13329","interpro_description":"Autophagy-related protein 2","interpro_id":"IPR026849","interpro_name":"ATG2","locations":[{"end":1596,"start":26}],"match_end":1596,"match_start":26,"name":"ATG2_CAD"},{"dbname":"PANTHER","id":"PTHR13190","interpro_description":"Autophagy-related protein 2","interpro_id":"IPR026849","interpro_name":"ATG2","locations":[{"end":1595,"start":752}],"match_end":1595,"match_start":752,"name":"AUTOPHAGY-RELATED 2, ISOFORM A"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":268,"start":244},{"end":1611,"start":1588}],"match_end":1611,"match_start":244,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":268,"start":255}],"match_end":268,"match_start":255,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3646558,"start_pos":3641670,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":118,"start":104}},{"range":{"end":477,"start":459}},{"range":{"end":680,"start":666}},{"range":{"end":1373,"start":1362}},{"range":{"end":1604,"start":1596}}],"name":"atg2","ortholog_annotations":[{"gene_uniquename":"SJAG_03851","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:20187","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03851","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:29028","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03851","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC31E1.01c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03851","ortholog_taxonid":4932,"ortholog_uniquename":"YNL242W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03851","ortholog_taxonid":4932,"ortholog_uniquename":"YNL242W","reference_uniquename":"PMID:26896847"}],"product":"autophagy associated intermembrane lipid transfer protein Atg2","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000044":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0032266"],"not-binding":["GO:0043495","GO:0120013"]}},"subset_termids":["GO:0000407","GO:0061024","GO:0006914","GO:0005975","GO:0006091","GO:0060090","GO:0008289","GO:0120013"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000045":null,"GO:0000423":null,"GO:0000425":null,"GO:0032266":null,"GO:0034045":null,"GO:0034727":null,"GO:0043495":null,"GO:0061709":null,"GO:0061723":null,"GO:0061908":null,"GO:0120010":null,"GO:0120013":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03851.1"],"transcripts_by_uniquename":{"SJAG_03851.1":null},"uniprot_identifier":"B6K582","uniquename":"SJAG_03851"}


id: SJAG_03852
data:
  {"active_sites":[{"assigned_by":"UniProtKB","range":{"end":187,"start":187}},{"assigned_by":"UniProtKB","range":{"end":194,"start":194}}],"binding_sites":[{"assigned_by":"UniProtKB","ligand":"NADP(+)","range":{"end":18,"start":13}},{"assigned_by":"UniProtKB","ligand":"NADP(+)","range":{"end":38,"start":36}},{"assigned_by":"UniProtKB","ligand":"NADP(+)","range":{"end":80,"start":78}},{"assigned_by":"UniProtKB","ligand":"NADP(+)","range":{"end":106,"start":106}},{"assigned_by":"UniProtKB","ligand":"substrate","range":{"end":106,"start":106}},{"assigned_by":"UniProtKB","ligand":"substrate","range":{"end":134,"start":132}},{"assigned_by":"UniProtKB","ligand":"substrate","range":{"end":191,"start":190}},{"assigned_by":"UniProtKB","ligand":"substrate","range":{"end":195,"start":195}},{"assigned_by":"UniProtKB","ligand":"substrate","range":{"end":264,"start":264}},{"assigned_by":"UniProtKB","ligand":"substrate","range":{"end":291,"start":291}},{"assigned_by":"UniProtKB","ligand":"substrate","range":{"end":449,"start":449}},{"assigned_by":"UniProtKB","ligand":"substrate","range":{"end":455,"start":455}}],"cv_annotations":{"biological_process":[{"annotations":[82243],"is_not":false,"summary":null,"term":"GO:0009051"}],"cellular_component":[{"annotations":[82241],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[113568],"is_not":false,"summary":null,"term":"GO:0005739"}],"molecular_function":[{"annotations":[82244],"is_not":false,"summary":null,"term":"GO:0050661"},{"annotations":[82242],"is_not":false,"summary":null,"term":"GO:0004616"}]},"dbxrefs":["InterPro:IPR013328","InterPro:IPR006114","InterPro:IPR006183","InterPro:IPR006184","InterPro:IPR036291","InterPro:IPR006113","UniProtKB/TrEMBL:B6K583","EnsemblGenomes-Gn:SJAG_03852","InterPro:IPR006115","EnsemblGenomes-Tr:EEB08687","InterPro:IPR008927","GOA:B6K583"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"tsr402","uniquename":"SJAG_03857"},{"name":"egt2","uniquename":"SJAG_03856"},{"name":"ssb1","uniquename":"SJAG_03855"},{"name":"mik1","uniquename":"SJAG_03854"},{"name":"msi2","uniquename":"SJAG_03853"},{"name":"gnd1","uniquename":"SJAG_03852"},{"uniquename":"SJAG_06268"},{"name":"atg2","uniquename":"SJAG_03851"},{"name":"pmr1","uniquename":"SJAG_03850"},{"name":"hub1","uniquename":"SJAG_03849"},{"name":"pep12","uniquename":"SJAG_03848"}],"genes_by_uniquename":{"HGNC:8891":null,"SJAG_03852":null,"SPBC660.16":null,"YGR256W":null,"YHR183W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"NAD binding domain of 6-phosphogluconate dehydrogenase","id":"PF03446","interpro_description":"6-phosphogluconate dehydrogenase, NADP-binding","interpro_id":"IPR006115","interpro_name":"6PGDH_NADP-bd","locations":[{"end":174,"start":9}],"match_end":174,"match_start":9,"name":"NAD_binding_2"},{"dbname":"PFAM","description":"6-phosphogluconate dehydrogenase, C-terminal domain","id":"PF00393","interpro_description":"6-phosphogluconate dehydrogenase, C-terminal","interpro_id":"IPR006114","interpro_name":"6PGDH_C","locations":[{"end":478,"start":183}],"match_end":478,"match_start":183,"name":"6PGD"},{"dbname":"PROSITE_PATTERNS","description":"6-phosphogluconate dehydrogenase signature.","id":"PS00461","interpro_description":"6-phosphogluconate-binding site","interpro_id":"IPR006184","interpro_name":"6PGdom_BS","locations":[{"end":269,"start":257}],"match_end":269,"match_start":257,"name":"6PGD"},{"dbname":"SMART","id":"SM01350","interpro_description":"6-phosphogluconate dehydrogenase, C-terminal","interpro_id":"IPR006114","interpro_name":"6PGDH_C","locations":[{"end":479,"start":183}],"match_end":479,"match_start":183,"name":"6PGD_2"},{"dbname":"PRINTS","description":"6-phosphogluconate dehydrogenase signature","id":"PR00076","interpro_description":"6-phosphogluconate dehydrogenase","interpro_id":"IPR006183","interpro_name":"Pgluconate_DH","locations":[{"end":30,"start":7},{"end":99,"start":70},{"end":148,"start":123},{"end":200,"start":172},{"end":280,"start":253},{"end":382,"start":360}],"match_end":382,"match_start":7,"name":"6PGDHDRGNASE"},{"dbname":"FUNFAM","description":"6-phosphogluconate dehydrogenase, decarboxylating","id":"G3DSA:3.40.50.720:FF:000007","locations":[{"end":184,"start":5}],"match_end":184,"match_start":5},{"dbname":"FUNFAM","description":"6-phosphogluconate dehydrogenase, decarboxylating","id":"G3DSA:1.10.1040.10:FF:000002","locations":[{"end":438,"start":185}],"match_end":438,"match_start":185},{"dbname":"FUNFAM","description":"6-phosphogluconate dehydrogenase, decarboxylating","id":"G3DSA:1.20.5.320:FF:000002","locations":[{"end":492,"start":439}],"match_end":492,"match_start":439},{"dbname":"SUPERFAMILY","id":"SSF51735","interpro_description":"NAD(P)-binding domain superfamily","interpro_id":"IPR036291","interpro_name":"NAD(P)-bd_dom_sf","locations":[{"end":178,"start":7}],"match_end":178,"match_start":7,"name":"NAD(P)-binding Rossmann-fold domains"},{"dbname":"SUPERFAMILY","id":"SSF48179","interpro_description":"6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily","interpro_id":"IPR008927","interpro_name":"6-PGluconate_DH-like_C_sf","locations":[{"end":482,"start":181}],"match_end":482,"match_start":181,"name":"6-phosphogluconate dehydrogenase C-terminal domain-like"},{"dbname":"GENE3D","id":"G3DSA:1.20.5.320","locations":[{"end":492,"start":439}],"match_end":492,"match_start":439},{"dbname":"GENE3D","id":"G3DSA:3.40.50.720","locations":[{"end":184,"start":5}],"match_end":184,"match_start":5},{"dbname":"GENE3D","id":"G3DSA:1.10.1040.10","interpro_description":"6-phosphogluconate dehydrogenase, domain 2","interpro_id":"IPR013328","interpro_name":"6PGD_dom2","locations":[{"end":437,"start":185}],"match_end":437,"match_start":185},{"dbname":"PANTHER","id":"PTHR11811","interpro_description":"6-phosphogluconate dehydrogenase","interpro_id":"IPR006183","interpro_name":"Pgluconate_DH","locations":[{"end":491,"start":6}],"match_end":491,"match_start":6,"name":"6-PHOSPHOGLUCONATE DEHYDROGENASE"},{"dbname":"PIRSF","id":"PIRSF000109","interpro_description":"6-phosphogluconate dehydrogenase, decarboxylating","interpro_id":"IPR006113","interpro_name":"6PGDH_Gnd/GntZ","locations":[{"end":487,"start":1}],"match_end":487,"match_start":1,"name":"6PGD"},{"dbname":"NCBIFAM","description":"decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase","id":"TIGR00873","interpro_description":"6-phosphogluconate dehydrogenase, decarboxylating","interpro_id":"IPR006113","interpro_name":"6PGDH_Gnd/GntZ","locations":[{"end":479,"start":8}],"match_end":479,"match_start":8,"name":"gnd"},{"dbname":"NCBIFAM","description":"NADP-dependent phosphogluconate dehydrogenase","id":"NF006765","locations":[{"end":463,"start":6}],"match_end":463,"match_start":6,"name":"PRK09287.1"}],"location":{"chromosome_name":"supercont5.2","end_pos":3640277,"start_pos":3638534,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":136,"start":126}}],"name":"gnd1","ortholog_annotations":[{"gene_uniquename":"SJAG_03852","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:8891","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03852","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC660.16","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03852","ortholog_taxonid":4932,"ortholog_uniquename":"YGR256W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03852","ortholog_taxonid":4932,"ortholog_uniquename":"YHR183W","reference_uniquename":"PMID:29761456"}],"product":"phosphogluconate dehydrogenase, decarboxylating","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0050661"],"not-binding":["GO:0004616"]}},"subset_termids":["GO:0006091","GO:0005829","GO:0055086","GO:0005739","GO:0016491"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004616":null,"GO:0005739":null,"GO:0005829":null,"GO:0009051":null,"GO:0050661":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03852.1"],"transcripts_by_uniquename":{"SJAG_03852.1":null},"uniprot_identifier":"B6K583","uniquename":"SJAG_03852"}


id: SJAG_03853
data:
  {"cv_annotations":{"biological_process":[{"annotations":[113565],"is_not":false,"summary":null,"term":"GO:0180010"}],"cellular_component":[{"annotations":[113562],"is_not":false,"summary":null,"term":"GO:0005737"},{"annotations":[113563],"is_not":false,"summary":null,"term":"GO:0005848"}],"molecular_function":[{"annotations":[113566],"is_not":false,"summary":null,"term":"GO:0003730"}]},"dbxrefs":["InterPro:IPR035979","InterPro:IPR037366","UniProtKB/TrEMBL:B6K584","EnsemblGenomes-Tr:EEB08688","InterPro:IPR034155","EnsemblGenomes-Gn:SJAG_03853","InterPro:IPR012677","InterPro:IPR034156","InterPro:IPR000504","GOA:B6K584"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":122,"start":1}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"fzr2","uniquename":"SJAG_03858"},{"name":"tsr402","uniquename":"SJAG_03857"},{"name":"egt2","uniquename":"SJAG_03856"},{"name":"ssb1","uniquename":"SJAG_03855"},{"name":"mik1","uniquename":"SJAG_03854"},{"name":"msi2","uniquename":"SJAG_03853"},{"name":"gnd1","uniquename":"SJAG_03852"},{"uniquename":"SJAG_06268"},{"name":"atg2","uniquename":"SJAG_03851"},{"name":"pmr1","uniquename":"SJAG_03850"},{"name":"hub1","uniquename":"SJAG_03849"}],"genes_by_uniquename":{"HGNC:18585":null,"HGNC:2683":null,"HGNC:7330":null,"SJAG_03853":null,"SPBC660.15":null,"YOL123W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"RNA recognition motif","id":"PF00076","interpro_description":"RNA recognition motif domain","interpro_id":"IPR000504","interpro_name":"RRM_dom","locations":[{"end":179,"start":123},{"end":263,"start":207}],"match_end":263,"match_start":123,"name":"RRM_1"},{"dbname":"CDD","description":"RRM2_Hrp1p","id":"cd12330","locations":[{"end":282,"start":205}],"match_end":282,"match_start":205,"name":"RRM2_Hrp1p"},{"dbname":"CDD","description":"RRM1_Hrp1p","id":"cd12577","interpro_description":"HRP1, RNA recognition motif 1","interpro_id":"IPR034156","interpro_name":"Hrp1_RRM1","locations":[{"end":197,"start":122}],"match_end":197,"match_start":122,"name":"RRM1_Hrp1p"},{"dbname":"PROSITE_PROFILES","description":"Eukaryotic RNA Recognition Motif (RRM) profile.","id":"PS50102","interpro_description":"RNA recognition motif domain","interpro_id":"IPR000504","interpro_name":"RRM_dom","locations":[{"end":202,"start":120},{"end":281,"start":204}],"match_end":281,"match_start":120,"name":"RRM"},{"dbname":"SMART","id":"SM00360","interpro_description":"RNA recognition motif domain","interpro_id":"IPR000504","interpro_name":"RRM_dom","locations":[{"end":192,"start":121},{"end":277,"start":205}],"match_end":277,"match_start":121,"name":"rrm1_1"},{"dbname":"FUNFAM","description":"RNA-binding protein Musashi homolog 2 isoform X1","id":"G3DSA:3.30.70.330:FF:000025","locations":[{"end":201,"start":120}],"match_end":201,"match_start":120},{"dbname":"SUPERFAMILY","id":"SSF54928","interpro_description":"RNA-binding domain superfamily","interpro_id":"IPR035979","interpro_name":"RBD_domain_sf","locations":[{"end":304,"start":106}],"match_end":304,"match_start":106,"name":"RNA-binding domain, RBD"},{"dbname":"GENE3D","id":"G3DSA:3.30.70.330","interpro_description":"Nucleotide-binding alpha-beta plait domain superfamily","interpro_id":"IPR012677","interpro_name":"Nucleotide-bd_a/b_plait_sf","locations":[{"end":313,"start":82}],"match_end":313,"match_start":82},{"dbname":"PANTHER","id":"PTHR48032","locations":[{"end":305,"start":118}],"match_end":305,"match_start":118,"name":"RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":122,"start":1}],"match_end":122,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Negative-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Negative-Polyelectrolyte","locations":[{"end":11,"start":1}],"match_end":11,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":38,"start":12},{"end":60,"start":50}],"match_end":60,"match_start":12,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3637124,"start_pos":3635850,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":14,"start":2}},{"range":{"end":45,"start":35}}],"name":"msi2","ortholog_annotations":[{"gene_uniquename":"SJAG_03853","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:18585","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03853","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:2683","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03853","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:7330","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03853","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC660.15","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03853","ortholog_taxonid":4932,"ortholog_uniquename":"YOL123W","reference_uniquename":"PMID:29761456"}],"product":"mRNA cleavage factor complex RNA-binding subunit Msi2","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003730"]}},"subset_termids":["GO:0005634","GO:0016071"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0003730":null,"GO:0005737":null,"GO:0005848":null,"GO:0180010":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03853.1"],"transcripts_by_uniquename":{"SJAG_03853.1":null},"uniprot_identifier":"B6K584","uniquename":"SJAG_03853"}


id: SJAG_03854
data:
  {"cv_annotations":{"biological_process":[{"annotations":[80470],"is_not":false,"summary":null,"term":"GO:0010972"},{"annotations":[80472],"is_not":false,"summary":null,"term":"GO:0110031"},{"annotations":[113559],"is_not":false,"summary":null,"term":"GO:0023052"}],"cellular_component":[{"annotations":[113555],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[80468],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[69184],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[80471],"is_not":false,"summary":null,"term":"GO:0004713"}],"mondo":[{"annotations":[87942],"is_not":false,"summary":null,"term":"MONDO:0020837"}]},"dbxrefs":["GOA:B6K585","InterPro:IPR008271","EnsemblGenomes-Tr:EEB08689","EnsemblGenomes-Gn:SJAG_03854","InterPro:IPR000719","InterPro:IPR011009","UniProtKB/TrEMBL:B6K585"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rps6a","uniquename":"SJAG_03859"},{"name":"fzr2","uniquename":"SJAG_03858"},{"name":"tsr402","uniquename":"SJAG_03857"},{"name":"egt2","uniquename":"SJAG_03856"},{"name":"ssb1","uniquename":"SJAG_03855"},{"name":"mik1","uniquename":"SJAG_03854"},{"name":"msi2","uniquename":"SJAG_03853"},{"name":"gnd1","uniquename":"SJAG_03852"},{"uniquename":"SJAG_06268"},{"name":"atg2","uniquename":"SJAG_03851"},{"name":"pmr1","uniquename":"SJAG_03850"}],"genes_by_uniquename":{"HGNC:12761":null,"HGNC:19684":null,"HGNC:29650":null,"SJAG_03854":null,"SPBC660.14":null,"YJL187C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Protein kinase domain","id":"PF00069","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":537,"start":279}],"match_end":537,"match_start":279,"name":"Pkinase"},{"dbname":"PROSITE_PATTERNS","description":"Serine/Threonine protein kinases active-site signature.","id":"PS00108","interpro_description":"Serine/threonine-protein kinase, active site","interpro_id":"IPR008271","interpro_name":"Ser/Thr_kinase_AS","locations":[{"end":410,"start":398}],"match_end":410,"match_start":398,"name":"PROTEIN_KINASE_ST"},{"dbname":"PROSITE_PROFILES","description":"Protein kinase domain profile.","id":"PS50011","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":538,"start":271}],"match_end":538,"match_start":271,"name":"PROTEIN_KINASE_DOM"},{"dbname":"SMART","id":"SM00220","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":538,"start":271}],"match_end":538,"match_start":271,"name":"serkin_6"},{"dbname":"SUPERFAMILY","id":"SSF56112","interpro_description":"Protein kinase-like domain superfamily","interpro_id":"IPR011009","interpro_name":"Kinase-like_dom_sf","locations":[{"end":539,"start":265}],"match_end":539,"match_start":265,"name":"Protein kinase-like (PK-like)"},{"dbname":"GENE3D","id":"G3DSA:3.30.200.20","locations":[{"end":352,"start":242}],"match_end":352,"match_start":242,"name":"Phosphorylase Kinase; domain 1"},{"dbname":"GENE3D","id":"G3DSA:1.10.510.10","locations":[{"end":541,"start":353}],"match_end":541,"match_start":353,"name":"Transferase(Phosphotransferase) domain 1"},{"dbname":"PANTHER","id":"PTHR11042","interpro_description":"Cell Cycle and Stress Response Kinase","interpro_id":"IPR050339","interpro_name":"CC_SR_Kinase","locations":[{"end":538,"start":132}],"match_end":538,"match_start":132,"name":"EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE  EIF2-ALPHA KINASE -RELATED"}],"location":{"chromosome_name":"supercont5.2","end_pos":3635021,"start_pos":3633296,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":26,"start":13}},{"range":{"end":194,"start":178}}],"name":"mik1","ortholog_annotations":[{"gene_uniquename":"SJAG_03854","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:12761","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03854","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:19684","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03854","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:29650","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03854","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC660.14","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03854","ortholog_taxonid":4932,"ortholog_uniquename":"YJL187C","reference_uniquename":"PMID:29761456"}],"product":"M phase inhibitor protein kinase Mik1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524"],"not-binding":["GO:0004713"]}},"subset_termids":["GO:0005634","GO:0004672","GO:0016301","GO:0005829","GO:0140096","GO:0023052","MONDO:0005047","GO:0044772"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004713":null,"GO:0005524":null,"GO:0005634":null,"GO:0005829":null,"GO:0010972":null,"GO:0023052":null,"GO:0110031":null,"MONDO:0020837":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03854.1"],"transcripts_by_uniquename":{"SJAG_03854.1":null},"uniprot_identifier":"B6K585","uniquename":"SJAG_03854"}


id: SJAG_03855
data:
  {"cv_annotations":{"biological_process":[{"annotations":[82160],"is_not":false,"summary":null,"term":"GO:0000724"},{"annotations":[82165],"is_not":false,"summary":null,"term":"GO:0051321"},{"annotations":[113544],"is_not":false,"summary":null,"term":"GO:0033260"},{"annotations":[82164],"is_not":false,"summary":null,"term":"GO:0006289"},{"annotations":[82166],"is_not":false,"summary":null,"term":"GO:0007004"}],"cellular_component":[{"annotations":[113533],"is_not":false,"summary":null,"term":"GO:0000785"},{"annotations":[71479],"is_not":false,"summary":null,"term":"GO:0140445"},{"annotations":[113536],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[82162],"is_not":false,"summary":null,"term":"GO:0005662"},{"annotations":[113540],"is_not":false,"summary":null,"term":"GO:0035861"}],"molecular_function":[{"annotations":[82167],"is_not":false,"summary":null,"term":"GO:0003684"},{"annotations":[82161],"is_not":false,"summary":null,"term":"GO:0043047"},{"annotations":[113552],"is_not":false,"summary":null,"term":"GO:0070034"},{"annotations":[71478],"is_not":false,"summary":null,"term":"GO:0008270"}],"mondo":[{"annotations":[89071],"is_not":false,"summary":null,"term":"MONDO:0030690"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB08690","InterPro:IPR031657","InterPro:IPR012340","GOA:B6K586","InterPro:IPR013955","InterPro:IPR007199","EnsemblGenomes-Gn:SJAG_03855","InterPro:IPR004591","UniProtKB/TrEMBL:B6K586","InterPro:IPR004365"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":165,"start":129}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_03860"},{"name":"rps6a","uniquename":"SJAG_03859"},{"name":"fzr2","uniquename":"SJAG_03858"},{"name":"tsr402","uniquename":"SJAG_03857"},{"name":"egt2","uniquename":"SJAG_03856"},{"name":"ssb1","uniquename":"SJAG_03855"},{"name":"mik1","uniquename":"SJAG_03854"},{"name":"msi2","uniquename":"SJAG_03853"},{"name":"gnd1","uniquename":"SJAG_03852"},{"uniquename":"SJAG_06268"},{"name":"atg2","uniquename":"SJAG_03851"}],"genes_by_uniquename":{"HGNC:10289":null,"SJAG_03855":null,"SPBC660.13c":null,"YAR007C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Replication factor-A C terminal domain","id":"PF08646","interpro_description":"Replication factor A, C-terminal","interpro_id":"IPR013955","interpro_name":"Rep_factor-A_C","locations":[{"end":601,"start":457}],"match_end":601,"match_start":457,"name":"Rep_fac-A_C"},{"dbname":"PFAM","description":"OB-fold nucleic acid binding domain","id":"PF01336","interpro_description":"OB-fold nucleic acid binding domain, AA-tRNA synthetase-type","interpro_id":"IPR004365","interpro_name":"NA-bd_OB_tRNA","locations":[{"end":274,"start":192}],"match_end":274,"match_start":192,"name":"tRNA_anti-codon"},{"dbname":"PFAM","description":"Replication protein A OB domain","id":"PF16900","interpro_description":"Replication protein A, OB domain","interpro_id":"IPR031657","interpro_name":"REPA_OB_2","locations":[{"end":396,"start":300}],"match_end":396,"match_start":300,"name":"REPA_OB_2"},{"dbname":"PFAM","description":"Replication factor-A protein 1, N-terminal domain","id":"PF04057","interpro_description":"Replication factor-A protein 1, N-terminal","interpro_id":"IPR007199","interpro_name":"Rep_factor-A_N","locations":[{"end":106,"start":5}],"match_end":106,"match_start":5,"name":"Rep-A_N"},{"dbname":"CDD","description":"RPA1_DBD_A","id":"cd04474","locations":[{"end":281,"start":181}],"match_end":281,"match_start":181,"name":"RPA1_DBD_A"},{"dbname":"CDD","description":"RPA1N","id":"cd04477","interpro_description":"Replication factor-A protein 1, N-terminal","interpro_id":"IPR007199","interpro_name":"Rep_factor-A_N","locations":[{"end":106,"start":8}],"match_end":106,"match_start":8,"name":"RPA1N"},{"dbname":"CDD","description":"RPA1_DBD_C","id":"cd04476","interpro_description":"Replication factor A, C-terminal, eukaryotes","interpro_id":"IPR047192","interpro_name":"Euk_RPA1_DBD_C","locations":[{"end":607,"start":441}],"match_end":607,"match_start":441,"name":"RPA1_DBD_C"},{"dbname":"CDD","description":"RPA1_DBD_B","id":"cd04475","locations":[{"end":411,"start":311}],"match_end":411,"match_start":311,"name":"RPA1_DBD_B"},{"dbname":"FUNFAM","description":"Replication protein A subunit","id":"G3DSA:2.40.50.140:FF:000064","locations":[{"end":421,"start":289}],"match_end":421,"match_start":289},{"dbname":"FUNFAM","description":"Replication protein A subunit","id":"G3DSA:2.40.50.140:FF:000090","locations":[{"end":608,"start":423}],"match_end":608,"match_start":423},{"dbname":"FUNFAM","description":"Replication protein A subunit","id":"G3DSA:2.40.50.140:FF:000041","locations":[{"end":286,"start":178}],"match_end":286,"match_start":178},{"dbname":"FUNFAM","description":"Replication protein A subunit","id":"G3DSA:2.40.50.140:FF:000117","locations":[{"end":122,"start":4}],"match_end":122,"match_start":4},{"dbname":"SUPERFAMILY","id":"SSF50249","interpro_description":"Nucleic acid-binding, OB-fold","interpro_id":"IPR012340","interpro_name":"NA-bd_OB-fold","locations":[{"end":117,"start":1},{"end":290,"start":180},{"end":416,"start":295},{"end":607,"start":436}],"match_end":607,"match_start":1,"name":"Nucleic acid-binding proteins"},{"dbname":"GENE3D","id":"G3DSA:2.40.50.140","interpro_description":"Nucleic acid-binding, OB-fold","interpro_id":"IPR012340","interpro_name":"NA-bd_OB-fold","locations":[{"end":122,"start":4},{"end":607,"start":178}],"match_end":607,"match_start":4},{"dbname":"PANTHER","id":"PTHR47165","locations":[{"end":577,"start":180}],"match_end":577,"match_start":180,"name":"OS03G0429900 PROTEIN"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":165,"start":129}],"match_end":165,"match_start":129,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":147,"start":136}],"match_end":147,"match_start":136,"name":"disorder_prediction"},{"dbname":"NCBIFAM","description":"replication factor-a protein 1 (rpa1)","id":"TIGR00617","interpro_description":"Replication factor A protein 1","interpro_id":"IPR004591","interpro_name":"Rfa1","locations":[{"end":606,"start":3}],"match_end":606,"match_start":3,"name":"rpa1"}],"location":{"chromosome_name":"supercont5.2","end_pos":3632884,"start_pos":3631018,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":146,"start":135}},{"range":{"end":170,"start":150}},{"range":{"end":395,"start":384}}],"name":"ssb1","ortholog_annotations":[{"gene_uniquename":"SJAG_03855","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10289","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03855","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC660.13c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03855","ortholog_taxonid":4932,"ortholog_uniquename":"YAR007C","reference_uniquename":"PMID:29761456"}],"product":"DNA replication factor A subunit Ssb1","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null,"GO_REF:0000117":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003684","GO:0043047","GO:0008270","GO:0070034"]}},"subset_termids":["GO:0006260","GO:0006281","GO:0006310","GO:0005694","GO:0032200","MONDO:0019303","GO:0005829","GO:0005634"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000724":null,"GO:0000785":null,"GO:0003684":null,"GO:0005662":null,"GO:0005829":null,"GO:0006289":null,"GO:0007004":null,"GO:0008270":null,"GO:0033260":null,"GO:0035861":null,"GO:0043047":null,"GO:0051321":null,"GO:0070034":null,"GO:0140445":null,"MONDO:0030690":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03855.1"],"transcripts_by_uniquename":{"SJAG_03855.1":null},"uniprot_identifier":"B6K586","uniquename":"SJAG_03855"}


id: SJAG_03856
data:
  {"cv_annotations":{"biological_process":[{"annotations":[113530],"is_not":false,"summary":null,"term":"GO:0052699"},{"annotations":[72824],"is_not":false,"summary":null,"term":"GO:1903257"}],"cellular_component":[{"annotations":[113528],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[113529],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[72825],"is_not":false,"summary":null,"term":"GO:1990411"}]},"dbxrefs":["InterPro:IPR015422","InterPro:IPR015424","EnsemblGenomes-Tr:EEB08691","InterPro:IPR015421","EnsemblGenomes-Gn:SJAG_03856","GOA:B6K587","UniProtKB/TrEMBL:B6K587","InterPro:IPR000192"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"gcv2","uniquename":"SJAG_03861"},{"uniquename":"SJAG_03860"},{"name":"rps6a","uniquename":"SJAG_03859"},{"name":"fzr2","uniquename":"SJAG_03858"},{"name":"tsr402","uniquename":"SJAG_03857"},{"name":"egt2","uniquename":"SJAG_03856"},{"name":"ssb1","uniquename":"SJAG_03855"},{"name":"mik1","uniquename":"SJAG_03854"},{"name":"msi2","uniquename":"SJAG_03853"},{"name":"gnd1","uniquename":"SJAG_03852"},{"uniquename":"SJAG_06268"}],"genes_by_uniquename":{"SJAG_03856":null,"SPBC660.12c":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Aminotransferase class-V","id":"PF00266","interpro_description":"Aminotransferase class V domain","interpro_id":"IPR000192","interpro_name":"Aminotrans_V_dom","locations":[{"end":335,"start":65}],"match_end":335,"match_start":65,"name":"Aminotran_5"},{"dbname":"SUPERFAMILY","id":"SSF53383","interpro_description":"Pyridoxal phosphate-dependent transferase","interpro_id":"IPR015424","interpro_name":"PyrdxlP-dep_Trfase","locations":[{"end":392,"start":16}],"match_end":392,"match_start":16,"name":"PLP-dependent transferases"},{"dbname":"GENE3D","id":"G3DSA:3.40.640.10","interpro_description":"Pyridoxal phosphate-dependent transferase, major domain","interpro_id":"IPR015421","interpro_name":"PyrdxlP-dep_Trfase_major","locations":[{"end":297,"start":37}],"match_end":297,"match_start":37},{"dbname":"GENE3D","id":"G3DSA:3.90.1150.10","interpro_description":"Pyridoxal phosphate-dependent transferase, small domain","interpro_id":"IPR015422","interpro_name":"PyrdxlP-dep_Trfase_small","locations":[{"end":36,"start":29},{"end":383,"start":298}],"match_end":383,"match_start":29,"name":"Aspartate Aminotransferase, domain 1"},{"dbname":"PANTHER","id":"PTHR43092","locations":[{"end":392,"start":7}],"match_end":392,"match_start":7,"name":"L-CYSTEINE DESULFHYDRASE"}],"location":{"chromosome_name":"supercont5.2","end_pos":3630529,"start_pos":3629342,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":72,"start":64}}],"name":"egt2","ortholog_annotations":[{"gene_uniquename":"SJAG_03856","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC660.12c","reference_uniquename":"PMID:21511999"}],"product":"ergothioneine biosynthesis methyltransferase Egt2","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:1990411"]}},"subset_termids":["GO:0005829","GO:0005634","GO:0016829","GO:0006790"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005634":null,"GO:0005829":null,"GO:0052699":null,"GO:1903257":null,"GO:1990411":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03856.1"],"transcripts_by_uniquename":{"SJAG_03856.1":null},"uniprot_identifier":"B6K587","uniquename":"SJAG_03856"}


id: SJAG_03857
data:
  {"cv_annotations":{"biological_process":[{"annotations":[90633],"is_not":false,"summary":null,"term":"GO:0030490"}],"cellular_component":[{"annotations":[90631],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[81854],"is_not":false,"summary":null,"term":"GO:0005634"}]},"dbxrefs":["GOA:B6K588","EnsemblGenomes-Gn:SJAG_03857","InterPro:IPR007320","UniProtKB/TrEMBL:B6K588","EnsemblGenomes-Tr:EEB08692"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"fxn1","uniquename":"SJAG_03862"},{"name":"gcv2","uniquename":"SJAG_03861"},{"uniquename":"SJAG_03860"},{"name":"rps6a","uniquename":"SJAG_03859"},{"name":"fzr2","uniquename":"SJAG_03858"},{"name":"tsr402","uniquename":"SJAG_03857"},{"name":"egt2","uniquename":"SJAG_03856"},{"name":"ssb1","uniquename":"SJAG_03855"},{"name":"mik1","uniquename":"SJAG_03854"},{"name":"msi2","uniquename":"SJAG_03853"},{"name":"gnd1","uniquename":"SJAG_03852"}],"genes_by_uniquename":{"HGNC:8762":null,"SJAG_03857":null,"SPAC13G6.09":null,"YOL022C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Programmed cell death protein 2, C-terminal putative domain","id":"PF04194","interpro_description":"Programmed cell death protein 2, C-terminal","interpro_id":"IPR007320","interpro_name":"PDCD2_C","locations":[{"end":262,"start":158}],"match_end":262,"match_start":158,"name":"PDCD2_C"},{"dbname":"PANTHER","id":"PTHR12298","locations":[{"end":267,"start":126}],"match_end":267,"match_start":126,"name":"PCDC2  PROGRAMMED CELL DEATH PROTEIN 2 -RELATED"}],"location":{"chromosome_name":"supercont5.2","end_pos":3629156,"start_pos":3628259,"strand":"forward"},"name":"tsr402","ortholog_annotations":[{"gene_uniquename":"SJAG_03857","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:8762","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03857","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC13G6.09","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03857","ortholog_taxonid":4932,"ortholog_uniquename":"YOL022C","reference_uniquename":"PMID:29761456"}],"product":"SSU-rRNA maturation protein Tsr4 homolog 2 Tsr402","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0005829","GO:0042254","GO:0005634"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005634":null,"GO:0005829":null,"GO:0030490":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03857.1"],"transcripts_by_uniquename":{"SJAG_03857.1":null},"uniprot_identifier":"B6K588","uniquename":"SJAG_03857"}


id: SJAG_03858
data:
  {"cv_annotations":{"biological_process":[{"annotations":[82264],"is_not":false,"summary":null,"term":"GO:0031145"}],"cellular_component":[{"annotations":[82263],"is_not":false,"summary":null,"term":"GO:0005680"}],"molecular_function":[{"annotations":[82262],"is_not":false,"summary":null,"term":"GO:0010997"},{"annotations":[82265],"is_not":false,"summary":null,"term":"GO:1990757"}]},"dbxrefs":["InterPro:IPR033010","GOA:B6K589","EnsemblGenomes-Tr:EEB08693","InterPro:IPR001680","EnsemblGenomes-Gn:SJAG_03858","InterPro:IPR036322","InterPro:IPR017986","UniProtKB/TrEMBL:B6K589","InterPro:IPR015943"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":28,"start":1}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_03863"},{"name":"fxn1","uniquename":"SJAG_03862"},{"name":"gcv2","uniquename":"SJAG_03861"},{"uniquename":"SJAG_03860"},{"name":"rps6a","uniquename":"SJAG_03859"},{"name":"fzr2","uniquename":"SJAG_03858"},{"name":"tsr402","uniquename":"SJAG_03857"},{"name":"egt2","uniquename":"SJAG_03856"},{"name":"ssb1","uniquename":"SJAG_03855"},{"name":"mik1","uniquename":"SJAG_03854"},{"name":"msi2","uniquename":"SJAG_03853"}],"genes_by_uniquename":{"SJAG_03858":null,"SPAC13G6.08":null,"YGR225W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"CDC20/Fizzy WD40 domain","id":"PF24807","interpro_description":"CDC20/Fizzy, WD40 domain","interpro_id":"IPR056150","interpro_name":"WD40_CDC20-Fz","locations":[{"end":467,"start":155}],"match_end":467,"match_start":155,"name":"WD40_CDC20-Fz"},{"dbname":"PROSITE_PROFILES","description":"Trp-Asp (WD) repeats profile.","id":"PS50082","interpro_description":"WD40 repeat","interpro_id":"IPR001680","interpro_name":"WD40_rpt","locations":[{"end":230,"start":198},{"end":322,"start":290}],"match_end":322,"match_start":198,"name":"WD_REPEATS_2"},{"dbname":"SMART","id":"SM00320","interpro_description":"WD40 repeat","interpro_id":"IPR001680","interpro_name":"WD40_rpt","locations":[{"end":230,"start":191},{"end":273,"start":233},{"end":322,"start":282},{"end":367,"start":326},{"end":468,"start":417}],"match_end":468,"match_start":191,"name":"WD40_4"},{"dbname":"SUPERFAMILY","id":"SSF50978","interpro_description":"WD40-repeat-containing domain superfamily","interpro_id":"IPR036322","interpro_name":"WD40_repeat_dom_sf","locations":[{"end":468,"start":162}],"match_end":468,"match_start":162,"name":"WD40 repeat-like"},{"dbname":"GENE3D","id":"G3DSA:2.130.10.10","interpro_description":"WD40/YVTN repeat-like-containing domain superfamily","interpro_id":"IPR015943","interpro_name":"WD40/YVTN_repeat-like_dom_sf","locations":[{"end":471,"start":113}],"match_end":471,"match_start":113},{"dbname":"PANTHER","id":"PTHR19918","interpro_description":"WD repeat Cdc20/Fizzy","interpro_id":"IPR033010","interpro_name":"Cdc20/Fizzy","locations":[{"end":470,"start":43}],"match_end":470,"match_start":43,"name":"CELL DIVISION CYCLE 20  CDC20   FIZZY -RELATED"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":28,"start":1}],"match_end":28,"match_start":1,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3627539,"start_pos":3626016,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":54,"start":38}}],"name":"fzr2","ortholog_annotations":[{"gene_uniquename":"SJAG_03858","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC13G6.08","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03858","ortholog_taxonid":4932,"ortholog_uniquename":"YGR225W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03858","ortholog_taxonid":4932,"ortholog_uniquename":"YGR225W","reference_uniquename":"PMID:26896847"}],"product":"meiotic fizzy-related APC coactivator Fzr2","references_by_uniquename":{"GO_REF:0000033":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0010997"],"not-binding":["GO:1990757"]}},"subset_termids":["GO:0030163","GO:0030234","GO:0005634","GO:0098772"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005680":null,"GO:0010997":null,"GO:0031145":null,"GO:1990757":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03858.1"],"transcripts_by_uniquename":{"SJAG_03858.1":null},"uniprot_identifier":"B6K589","uniquename":"SJAG_03858"}


id: SJAG_03859
data:
  {"cv_annotations":{"biological_process":[{"annotations":[103513],"is_not":false,"summary":null,"term":"GO:0002181"}],"cellular_component":[{"annotations":[103511],"is_not":false,"summary":null,"term":"GO:0022627"}],"molecular_function":[{"annotations":[69042],"is_not":false,"summary":null,"term":"GO:0003735"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB08694","UniProtKB/TrEMBL:B6K590","EnsemblGenomes-Gn:SJAG_03859","InterPro:IPR001377","InterPro:IPR014401","GOA:B6K590","InterPro:IPR018282"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"sec15","uniquename":"SJAG_03864"},{"uniquename":"SJAG_03863"},{"name":"fxn1","uniquename":"SJAG_03862"},{"name":"gcv2","uniquename":"SJAG_03861"},{"uniquename":"SJAG_03860"},{"name":"rps6a","uniquename":"SJAG_03859"},{"name":"fzr2","uniquename":"SJAG_03858"},{"name":"tsr402","uniquename":"SJAG_03857"},{"name":"egt2","uniquename":"SJAG_03856"},{"name":"ssb1","uniquename":"SJAG_03855"},{"name":"mik1","uniquename":"SJAG_03854"}],"genes_by_uniquename":{"HGNC:10429":null,"SJAG_03859":null,"SPAC13G6.07c":null,"SPAPB1E7.12":null,"YBR181C":null,"YPL090C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Ribosomal protein S6e","id":"PF01092","interpro_description":"Small ribosomal subunit protein eS6","interpro_id":"IPR001377","interpro_name":"Ribosomal_eS6","locations":[{"end":126,"start":1}],"match_end":126,"match_start":1,"name":"Ribosomal_S6e"},{"dbname":"PROSITE_PATTERNS","description":"Ribosomal protein S6e signature.","id":"PS00578","interpro_description":"Small ribosomal subunit protein eS6, conserved site","interpro_id":"IPR018282","interpro_name":"Ribosomal_eS6_CS","locations":[{"end":63,"start":52}],"match_end":63,"match_start":52,"name":"RIBOSOMAL_S6E"},{"dbname":"SMART","id":"SM01405","interpro_description":"Small ribosomal subunit protein eS6","interpro_id":"IPR001377","interpro_name":"Ribosomal_eS6","locations":[{"end":126,"start":1}],"match_end":126,"match_start":1,"name":"Ribosomal_S6e_2"},{"dbname":"FUNFAM","description":"40S ribosomal protein S6","id":"G3DSA:1.20.5.2650:FF:000001","locations":[{"end":239,"start":131}],"match_end":239,"match_start":131},{"dbname":"GENE3D","id":"G3DSA:1.20.5.2650","locations":[{"end":239,"start":131}],"match_end":239,"match_start":131},{"dbname":"PANTHER","id":"PTHR11502","interpro_description":"Small ribosomal subunit protein eS6","interpro_id":"IPR001377","interpro_name":"Ribosomal_eS6","locations":[{"end":236,"start":1}],"match_end":236,"match_start":1,"name":"40S RIBOSOMAL PROTEIN S6"},{"dbname":"PIRSF","id":"PIRSF002129","interpro_description":"Small ribosomal subunit protein eS6-like","interpro_id":"IPR014401","interpro_name":"Ribosomal_eS6-like","locations":[{"end":239,"start":1}],"match_end":239,"match_start":1,"name":"RPS6e"}],"location":{"chromosome_name":"supercont5.2","end_pos":3625361,"start_pos":3624642,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":77,"start":66}},{"range":{"end":217,"start":204}}],"name":"rps6a","ortholog_annotations":[{"gene_uniquename":"SJAG_03859","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10429","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03859","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10429","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03859","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC13G6.07c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03859","ortholog_taxonid":4896,"ortholog_uniquename":"SPAPB1E7.12","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03859","ortholog_taxonid":4932,"ortholog_uniquename":"YBR181C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03859","ortholog_taxonid":4932,"ortholog_uniquename":"YBR181C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03859","ortholog_taxonid":4932,"ortholog_uniquename":"YBR181C","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03859","ortholog_taxonid":4932,"ortholog_uniquename":"YPL090C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03859","ortholog_taxonid":4932,"ortholog_uniquename":"YPL090C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03859","ortholog_taxonid":4932,"ortholog_uniquename":"YPL090C","reference_uniquename":"PMID:26896847"}],"product":"40S ribosomal protein S6","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0003735"]}},"subset_termids":["GO:0005829","GO:0022626","GO:0002181","GO:0005198"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0002181":null,"GO:0003735":null,"GO:0022627":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03859.1"],"transcripts_by_uniquename":{"SJAG_03859.1":null},"uniprot_identifier":"B6K590","uniquename":"SJAG_03859"}


id: SJAG_03860
data:
  {"active_sites":[{"assigned_by":"UniProtKB","range":{"end":3059,"start":3059}}],"coiled_coil_coords":[{"range":{"end":42,"start":22}},{"range":{"end":2672,"start":2652}}],"cv_annotations":{"biological_process":[{"annotations":[71066],"is_not":false,"summary":null,"term":"GO:0120113"},{"annotations":[81871],"is_not":false,"summary":null,"term":"GO:0006511"}],"cellular_component":[{"annotations":[81870],"is_not":false,"summary":null,"term":"GO:0005737"},{"annotations":[81869],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[81872],"is_not":false,"summary":null,"term":"GO:0061630"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_03860","InterPro:IPR035983","InterPro:IPR010314","InterPro:IPR000569","InterPro:IPR010309","InterPro:IPR025527","GOA:B6K591","EnsemblGenomes-Tr:EEB08695","UniProtKB/TrEMBL:B6K591"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":1824,"start":1769}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"get4","uniquename":"SJAG_03865"},{"name":"sec15","uniquename":"SJAG_03864"},{"uniquename":"SJAG_03863"},{"name":"fxn1","uniquename":"SJAG_03862"},{"name":"gcv2","uniquename":"SJAG_03861"},{"uniquename":"SJAG_03860"},{"name":"rps6a","uniquename":"SJAG_03859"},{"name":"fzr2","uniquename":"SJAG_03858"},{"name":"tsr402","uniquename":"SJAG_03857"},{"name":"egt2","uniquename":"SJAG_03856"},{"name":"ssb1","uniquename":"SJAG_03855"}],"genes_by_uniquename":{"SJAG_03860":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Domain of Unknown Function (DUF913)","id":"PF06025","interpro_description":"E3 ubiquitin ligase, domain of unknown function DUF913","interpro_id":"IPR010314","interpro_name":"E3_Ub_ligase_DUF913","locations":[{"end":644,"start":490}],"match_end":644,"match_start":490,"name":"DUF913"},{"dbname":"PFAM","description":"HECT-domain (ubiquitin-transferase)","id":"PF00632","interpro_description":"HECT domain","interpro_id":"IPR000569","interpro_name":"HECT_dom","locations":[{"end":3091,"start":2786}],"match_end":3091,"match_start":2786,"name":"HECT"},{"dbname":"PFAM","description":"Domain of Unknown Function (DUF908)","id":"PF06012","interpro_description":"E3 ubiquitin ligase, domain of unknown function DUF908","interpro_id":"IPR010309","interpro_name":"E3_Ub_ligase_DUF908","locations":[{"end":382,"start":93}],"match_end":382,"match_start":93,"name":"DUF908"},{"dbname":"CDD","description":"HECTc","id":"cd00078","interpro_description":"HECT domain","interpro_id":"IPR000569","interpro_name":"HECT_dom","locations":[{"end":3090,"start":2738}],"match_end":3090,"match_start":2738,"name":"HECTc"},{"dbname":"PROSITE_PROFILES","description":"HECT domain profile.","id":"PS50237","interpro_description":"HECT domain","interpro_id":"IPR000569","interpro_name":"HECT_dom","locations":[{"end":3092,"start":2756}],"match_end":3092,"match_start":2756,"name":"HECT"},{"dbname":"SMART","id":"SM00119","interpro_description":"HECT domain","interpro_id":"IPR000569","interpro_name":"HECT_dom","locations":[{"end":3092,"start":2754}],"match_end":3092,"match_start":2754,"name":"hect_3"},{"dbname":"FUNFAM","description":"E3 ubiquitin-protein ligase HUWE1, variant","id":"G3DSA:3.30.2410.10:FF:000004","locations":[{"end":3092,"start":2972}],"match_end":3092,"match_start":2972},{"dbname":"FUNFAM","description":"E3 ubiquitin-protein ligase NEDD4-like","id":"G3DSA:3.30.2160.10:FF:000001","locations":[{"end":2935,"start":2858}],"match_end":2935,"match_start":2858},{"dbname":"FUNFAM","description":"E3 ubiquitin-protein ligase UPL1","id":"G3DSA:3.90.1750.10:FF:000003","locations":[{"end":2875,"start":2710}],"match_end":2875,"match_start":2710},{"dbname":"SUPERFAMILY","id":"SSF56204","interpro_description":"HECT, E3 ligase catalytic domain","interpro_id":"IPR035983","interpro_name":"Hect_E3_ubiquitin_ligase","locations":[{"end":3085,"start":2722}],"match_end":3085,"match_start":2722,"name":"Hect, E3 ligase catalytic domain"},{"dbname":"GENE3D","id":"G3DSA:3.30.2160.10","locations":[{"end":2935,"start":2858}],"match_end":2935,"match_start":2858,"name":"Hect, E3 ligase catalytic domain"},{"dbname":"GENE3D","id":"G3DSA:3.90.1750.10","locations":[{"end":2857,"start":2707},{"end":2968,"start":2936}],"match_end":2968,"match_start":2707,"name":"Hect, E3 ligase catalytic domains"},{"dbname":"GENE3D","id":"G3DSA:3.30.2410.10","locations":[{"end":3092,"start":2972}],"match_end":3092,"match_start":2972,"name":"Hect, E3 ligase catalytic domain"},{"dbname":"PANTHER","id":"PTHR11254","interpro_description":"E3 ubiquitin-protein ligase","interpro_id":"IPR050409","interpro_name":"E3_ubiq-protein_ligase","locations":[{"end":3090,"start":1234}],"match_end":3090,"match_start":1234,"name":"HECT DOMAIN UBIQUITIN-PROTEIN LIGASE"},{"dbname":"COILS","id":"Coil","locations":[{"end":42,"start":22},{"end":2672,"start":2652}],"match_end":2672,"match_start":22,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":1824,"start":1769}],"match_end":1824,"match_start":1769,"name":"disorder_prediction"},{"dbname":"MOBIDB-Negative-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Negative-Polyelectrolyte","locations":[{"end":1823,"start":1814}],"match_end":1823,"match_start":1814,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":1781,"start":1769}],"match_end":1781,"match_start":1769,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3624112,"start_pos":3614574,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":141,"start":121}},{"range":{"end":487,"start":469}},{"range":{"end":598,"start":587}},{"range":{"end":770,"start":754}},{"range":{"end":905,"start":889}},{"range":{"end":1023,"start":1010}},{"range":{"end":1331,"start":1318}},{"range":{"end":1753,"start":1740}},{"range":{"end":1796,"start":1781}},{"range":{"end":1819,"start":1810}},{"range":{"end":1913,"start":1897}},{"range":{"end":2967,"start":2960}}],"product":"HECT-type ubiquitin-protein ligase E3 Ptr1-like","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000117":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0061630"]}},"subset_termids":["GO:0005634","GO:0016746","GO:0019787","GO:0140096","GO:0030163","GO:0006605"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005634":null,"GO:0005737":null,"GO:0006511":null,"GO:0061630":null,"GO:0120113":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03860.1"],"transcripts_by_uniquename":{"SJAG_03860.1":null},"uniprot_identifier":"B6K591","uniquename":"SJAG_03860"}


id: SJAG_03861
data:
  {"cv_annotations":{"PSI-MOD":[{"annotations":[82344],"is_not":false,"summary":null,"term":"MOD:00128"}],"biological_process":[{"annotations":[76065],"is_not":false,"summary":null,"term":"GO:0019464"}],"cellular_component":[{"annotations":[76064],"is_not":false,"summary":null,"term":"GO:0005960"},{"annotations":[90614],"is_not":false,"summary":null,"term":"GO:0005759"}],"molecular_function":[{"annotations":[76061],"is_not":false,"summary":null,"term":"GO:0016594"},{"annotations":[76062],"is_not":false,"summary":null,"term":"GO:0004375"},{"annotations":[76066],"is_not":false,"summary":null,"term":"GO:0030170"}],"mondo":[{"annotations":[86909],"is_not":false,"summary":null,"term":"MONDO:0958179"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_03861","InterPro:IPR015424","InterPro:IPR015421","UniProtKB/TrEMBL:B6K592","GOA:B6K592","InterPro:IPR015422","EnsemblGenomes-Tr:EEB08696","InterPro:IPR020581","InterPro:IPR003437"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_03866"},{"name":"get4","uniquename":"SJAG_03865"},{"name":"sec15","uniquename":"SJAG_03864"},{"uniquename":"SJAG_03863"},{"name":"fxn1","uniquename":"SJAG_03862"},{"name":"gcv2","uniquename":"SJAG_03861"},{"uniquename":"SJAG_03860"},{"name":"rps6a","uniquename":"SJAG_03859"},{"name":"fzr2","uniquename":"SJAG_03858"},{"name":"tsr402","uniquename":"SJAG_03857"},{"name":"egt2","uniquename":"SJAG_03856"}],"genes_by_uniquename":{"HGNC:4313":null,"SJAG_03861":null,"SPAC13G6.06c":null,"YMR189W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Glycine cleavage system P-protein","id":"PF02347","interpro_description":"Glycine cleavage system P-protein, N-terminal domain","interpro_id":"IPR049315","interpro_name":"GDC-P_N","locations":[{"end":488,"start":61},{"end":785,"start":499}],"match_end":785,"match_start":61,"name":"GDC-P"},{"dbname":"PFAM","description":"Glycine dehydrogenase, C-terminal domain","id":"PF21478","interpro_description":"Glycine dehydrogenase, C-terminal domain","interpro_id":"IPR049316","interpro_name":"GDC-P_C","locations":[{"end":949,"start":828}],"match_end":949,"match_start":828,"name":"GcvP2_C"},{"dbname":"CDD","description":"GDC-P","id":"cd00613","interpro_description":"Glycine cleavage system P protein","interpro_id":"IPR020581","interpro_name":"GDC_P","locations":[{"end":488,"start":110}],"match_end":488,"match_start":110,"name":"GDC-P"},{"dbname":"FUNFAM","description":"Glycine dehydrogenase (decarboxylating), mitochondrial","id":"G3DSA:3.40.640.10:FF:000005","locations":[{"end":403,"start":141}],"match_end":403,"match_start":141},{"dbname":"FUNFAM","description":"Glycine dehydrogenase (decarboxylating), mitochondrial","id":"G3DSA:3.90.1150.10:FF:000007","locations":[{"end":953,"start":815}],"match_end":953,"match_start":815},{"dbname":"FUNFAM","description":"glycine dehydrogenase (Decarboxylating), mitochondrial","id":"G3DSA:3.40.640.10:FF:000007","locations":[{"end":805,"start":572}],"match_end":805,"match_start":572},{"dbname":"SUPERFAMILY","id":"SSF53383","interpro_description":"Pyridoxal phosphate-dependent transferase","interpro_id":"IPR015424","interpro_name":"PyrdxlP-dep_Trfase","locations":[{"end":487,"start":61},{"end":936,"start":511},{"end":1002,"start":979}],"match_end":1002,"match_start":61,"name":"PLP-dependent transferases"},{"dbname":"GENE3D","id":"G3DSA:3.90.1150.10","interpro_description":"Pyridoxal phosphate-dependent transferase, small domain","interpro_id":"IPR015422","interpro_name":"PyrdxlP-dep_Trfase_small","locations":[{"end":140,"start":130},{"end":456,"start":404},{"end":953,"start":819}],"match_end":953,"match_start":130,"name":"Aspartate Aminotransferase, domain 1"},{"dbname":"GENE3D","id":"G3DSA:3.40.640.10","interpro_description":"Pyridoxal phosphate-dependent transferase, major domain","interpro_id":"IPR015421","interpro_name":"PyrdxlP-dep_Trfase_major","locations":[{"end":403,"start":141},{"end":818,"start":569}],"match_end":818,"match_start":141},{"dbname":"PANTHER","id":"PTHR11773","interpro_description":"Glycine cleavage system P protein","interpro_id":"IPR020581","interpro_name":"GDC_P","locations":[{"end":1005,"start":47}],"match_end":1005,"match_start":47,"name":"GLYCINE DEHYDROGENASE, DECARBOXYLATING"},{"dbname":"HAMAP","description":"Glycine dehydrogenase (decarboxylating) [gcvP].","id":"MF_00711","interpro_description":"Glycine dehydrogenase (decarboxylating)","interpro_id":"IPR003437","interpro_name":"GcvP","locations":[{"end":1006,"start":52}],"match_end":1006,"match_start":52,"name":"GcvP"},{"dbname":"NCBIFAM","description":"aminomethyl-transferring glycine dehydrogenase","id":"TIGR00461","interpro_description":"Glycine dehydrogenase (decarboxylating)","interpro_id":"IPR003437","interpro_name":"GcvP","locations":[{"end":1000,"start":61}],"match_end":1000,"match_start":61,"name":"gcvP"},{"dbname":"NCBIFAM","description":"aminomethyl-transferring glycine dehydrogenase subunit GcvPB","id":"NF003346","locations":[{"end":933,"start":482}],"match_end":933,"match_start":482,"name":"PRK04366.1"}],"location":{"chromosome_name":"supercont5.2","end_pos":3612132,"start_pos":3609109,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":34,"start":10}},{"range":{"end":304,"start":272}},{"range":{"end":770,"start":760}},{"range":{"end":932,"start":922}}],"name":"gcv2","ortholog_annotations":[{"gene_uniquename":"SJAG_03861","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:4313","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03861","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC13G6.06c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03861","ortholog_taxonid":4932,"ortholog_uniquename":"YMR189W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03861","ortholog_taxonid":4932,"ortholog_uniquename":"YMR189W","reference_uniquename":"PMID:26896847"}],"product":"glycine cleavage complex subunit P","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null,"PMID:36408920":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0030170","GO:0016594"],"not-binding":["GO:0004375"]}},"subset_termids":["MONDO:0005066","MONDO:0004736","GO:0005739","GO:0006520","GO:0016491"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004375":null,"GO:0005759":null,"GO:0005960":null,"GO:0016594":null,"GO:0019464":null,"GO:0030170":null,"MOD:00128":null,"MONDO:0958179":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03861.1"],"transcripts_by_uniquename":{"SJAG_03861.1":null},"uniprot_identifier":"B6K592","uniquename":"SJAG_03861"}


id: SJAG_03862
data:
  {"coiled_coil_coords":[{"range":{"end":69,"start":49}}],"cv_annotations":{"biological_process":[{"annotations":[115872],"is_not":false,"summary":null,"term":"GO:0044571"},{"annotations":[115873],"is_not":false,"summary":null,"term":"GO:0006783"},{"annotations":[59448],"is_not":false,"summary":null,"term":"GO:0006879"}],"cellular_component":[{"annotations":[115869],"is_not":false,"summary":null,"term":"GO:0099128"},{"annotations":[115870],"is_not":false,"summary":null,"term":"GO:0005759"}],"molecular_function":[{"annotations":[59444],"is_not":false,"summary":null,"term":"GO:0008199"},{"annotations":[59450],"is_not":false,"summary":null,"term":"GO:0004322"},{"annotations":[115877],"is_not":false,"summary":null,"term":"GO:0034986"}],"mondo":[{"annotations":[87460],"is_not":false,"summary":null,"term":"MONDO:0100340"}]},"dbxrefs":["GOA:B6K593","InterPro:IPR036524","EnsemblGenomes-Tr:EEB08697","InterPro:IPR020895","UniProtKB/TrEMBL:B6K593","InterPro:IPR017789","InterPro:IPR002908","EnsemblGenomes-Gn:SJAG_03862"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"mis16","uniquename":"SJAG_03867"},{"uniquename":"SJAG_03866"},{"name":"get4","uniquename":"SJAG_03865"},{"name":"sec15","uniquename":"SJAG_03864"},{"uniquename":"SJAG_03863"},{"name":"fxn1","uniquename":"SJAG_03862"},{"name":"gcv2","uniquename":"SJAG_03861"},{"uniquename":"SJAG_03860"},{"name":"rps6a","uniquename":"SJAG_03859"},{"name":"fzr2","uniquename":"SJAG_03858"},{"name":"tsr402","uniquename":"SJAG_03857"}],"genes_by_uniquename":{"HGNC:3951":null,"SJAG_03862":null,"SPCC1183.03c":null,"YDL120W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Frataxin-like domain","id":"PF01491","interpro_description":"Frataxin/CyaY","interpro_id":"IPR002908","interpro_name":"Frataxin/CyaY","locations":[{"end":147,"start":41}],"match_end":147,"match_start":41,"name":"Frataxin_Cyay"},{"dbname":"PROSITE_PATTERNS","description":"Frataxin family signature.","id":"PS01344","interpro_description":"Frataxin conserved site","interpro_id":"IPR020895","interpro_name":"Frataxin_CS","locations":[{"end":106,"start":92}],"match_end":106,"match_start":92,"name":"FRATAXIN_1"},{"dbname":"PROSITE_PROFILES","description":"Frataxin family profile.","id":"PS50810","interpro_description":"Frataxin/CyaY","interpro_id":"IPR002908","interpro_name":"Frataxin/CyaY","locations":[{"end":148,"start":40}],"match_end":148,"match_start":40,"name":"FRATAXIN_2"},{"dbname":"SMART","id":"SM01219","interpro_description":"Frataxin/CyaY","interpro_id":"IPR002908","interpro_name":"Frataxin/CyaY","locations":[{"end":151,"start":40}],"match_end":151,"match_start":40,"name":"Frataxin_Cyay_2"},{"dbname":"PRINTS","description":"Frataxin signature","id":"PR00904","interpro_description":"Frataxin/CyaY","interpro_id":"IPR002908","interpro_name":"Frataxin/CyaY","locations":[{"end":58,"start":40},{"end":108,"start":78}],"match_end":108,"match_start":40,"name":"FRATAXIN"},{"dbname":"SUPERFAMILY","id":"SSF55387","interpro_description":"Frataxin/CyaY superfamily","interpro_id":"IPR036524","interpro_name":"Frataxin/CyaY_sf","locations":[{"end":147,"start":34}],"match_end":147,"match_start":34,"name":"Frataxin/Nqo15-like"},{"dbname":"GENE3D","id":"G3DSA:3.30.920.10","interpro_description":"Frataxin/CyaY superfamily","interpro_id":"IPR036524","interpro_name":"Frataxin/CyaY_sf","locations":[{"end":155,"start":35}],"match_end":155,"match_start":35,"name":"Frataxin/CyaY"},{"dbname":"PANTHER","id":"PTHR16821","interpro_description":"Frataxin/CyaY","interpro_id":"IPR002908","interpro_name":"Frataxin/CyaY","locations":[{"end":151,"start":25}],"match_end":151,"match_start":25,"name":"FRATAXIN"},{"dbname":"COILS","id":"Coil","locations":[{"end":69,"start":49}],"match_end":69,"match_start":49,"name":"Coil"},{"dbname":"NCBIFAM","description":"iron donor protein CyaY","id":"TIGR03421","interpro_description":"Frataxin/CyaY","interpro_id":"IPR002908","interpro_name":"Frataxin/CyaY","locations":[{"end":150,"start":42}],"match_end":150,"match_start":42,"name":"FeS_CyaY"},{"dbname":"NCBIFAM","description":"frataxin","id":"TIGR03422","interpro_description":"Frataxin","interpro_id":"IPR017789","interpro_name":"Frataxin","locations":[{"end":141,"start":44}],"match_end":141,"match_start":44,"name":"mito_frataxin"}],"location":{"chromosome_name":"supercont5.2","end_pos":3608167,"start_pos":3607547,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":21,"start":10}}],"name":"fxn1","ortholog_annotations":[{"gene_uniquename":"SJAG_03862","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:3951","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03862","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC1183.03c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03862","ortholog_taxonid":4932,"ortholog_uniquename":"YDL120W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03862","ortholog_taxonid":4932,"ortholog_uniquename":"YDL120W","reference_uniquename":"PMID:26896847"}],"product":"mitochondrial [2Fe-2S] cluster assembly frataxin Fxn1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000003":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0008199"],"not-binding":["GO:0004322","GO:0034986"]}},"subset_termids":["GO:0005829","GO:0016226","GO:0033013","GO:0005739","MONDO:0005559","GO:0140104","MONDO:0006025","GO:0016491","GO:0098771"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004322":null,"GO:0005759":null,"GO:0006783":null,"GO:0006879":null,"GO:0008199":null,"GO:0034986":null,"GO:0044571":null,"GO:0099128":null,"MONDO:0100340":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03862.1"],"transcripts_by_uniquename":{"SJAG_03862.1":null},"uniprot_identifier":"B6K593","uniquename":"SJAG_03862"}


id: SJAG_03863
data:
  {"cv_annotations":{"biological_process":[{"annotations":[115867],"is_not":false,"summary":null,"term":"GO:0002182"}],"cellular_component":[{"annotations":[115865],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[74478],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[115868],"is_not":false,"summary":null,"term":"GO:0004364"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB08698","UniProtKB/TrEMBL:B6K594","InterPro:IPR036282","InterPro:IPR036249","InterPro:IPR040079","GOA:B6K594","InterPro:IPR004046","InterPro:IPR010987","InterPro:IPR004045","EnsemblGenomes-Gn:SJAG_03863"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"scn3","uniquename":"SJAG_03868"},{"name":"mis16","uniquename":"SJAG_03867"},{"uniquename":"SJAG_03866"},{"name":"get4","uniquename":"SJAG_03865"},{"name":"sec15","uniquename":"SJAG_03864"},{"uniquename":"SJAG_03863"},{"name":"fxn1","uniquename":"SJAG_03862"},{"name":"gcv2","uniquename":"SJAG_03861"},{"uniquename":"SJAG_03860"},{"name":"rps6a","uniquename":"SJAG_03859"},{"name":"fzr2","uniquename":"SJAG_03858"}],"genes_by_uniquename":{"HGNC:3212":null,"HGNC:3213":null,"SJAG_03863":null,"SPBC460.02c":null,"SPCC1183.02":null,"YGR201C":null,"YKL081W":null,"YPL048W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Glutathione S-transferase, N-terminal domain","id":"PF02798","interpro_description":"Glutathione S-transferase, N-terminal","interpro_id":"IPR004045","interpro_name":"Glutathione_S-Trfase_N","locations":[{"end":75,"start":4}],"match_end":75,"match_start":4,"name":"GST_N"},{"dbname":"PFAM","description":"Glutathione S-transferase, C-terminal domain","id":"PF00043","interpro_description":"Glutathione S-transferase, C-terminal","interpro_id":"IPR004046","interpro_name":"GST_C","locations":[{"end":198,"start":114}],"match_end":198,"match_start":114,"name":"GST_C"},{"dbname":"CDD","description":"GST_C_EF1Bgamma_like","id":"cd03181","locations":[{"end":213,"start":90}],"match_end":213,"match_start":90,"name":"GST_C_EF1Bgamma_like"},{"dbname":"CDD","description":"GST_N_EF1Bgamma","id":"cd03044","locations":[{"end":76,"start":4}],"match_end":76,"match_start":4,"name":"GST_N_EF1Bgamma"},{"dbname":"PROSITE_PROFILES","description":"Soluble glutathione S-transferase C-terminal domain profile.","id":"PS50405","interpro_description":"Glutathione S-transferase, C-terminal-like","interpro_id":"IPR010987","interpro_name":"Glutathione-S-Trfase_C-like","locations":[{"end":219,"start":87}],"match_end":219,"match_start":87,"name":"GST_CTER"},{"dbname":"PROSITE_PROFILES","description":"Soluble glutathione S-transferase N-terminal domain profile.","id":"PS50404","interpro_description":"Glutathione S-transferase, N-terminal","interpro_id":"IPR004045","interpro_name":"Glutathione_S-Trfase_N","locations":[{"end":81,"start":2}],"match_end":81,"match_start":2,"name":"GST_NTER"},{"dbname":"FUNFAM","description":"Elongation factor 1 gamma","id":"G3DSA:3.40.30.10:FF:000142","locations":[{"end":79,"start":1}],"match_end":79,"match_start":1},{"dbname":"SUPERFAMILY","id":"SSF47616","interpro_description":"Glutathione S-transferase, C-terminal domain superfamily","interpro_id":"IPR036282","interpro_name":"Glutathione-S-Trfase_C_sf","locations":[{"end":205,"start":72}],"match_end":205,"match_start":72,"name":"GST C-terminal domain-like"},{"dbname":"SUPERFAMILY","id":"SSF52833","interpro_description":"Thioredoxin-like superfamily","interpro_id":"IPR036249","interpro_name":"Thioredoxin-like_sf","locations":[{"end":76,"start":1}],"match_end":76,"match_start":1,"name":"Thioredoxin-like"},{"dbname":"GENE3D","id":"G3DSA:1.20.1050.10","locations":[{"end":218,"start":82}],"match_end":218,"match_start":82},{"dbname":"GENE3D","id":"G3DSA:3.40.30.10","locations":[{"end":77,"start":1}],"match_end":77,"match_start":1,"name":"Glutaredoxin"},{"dbname":"PANTHER","id":"PTHR43986","interpro_description":"Elongation Factors and Glutathione S-transferases","interpro_id":"IPR050802","interpro_name":"EF-GSTs","locations":[{"end":212,"start":4}],"match_end":212,"match_start":4,"name":"ELONGATION FACTOR 1-GAMMA"},{"dbname":"SFLD","description":"Glutathione Transferase (cytosolic)","id":"SFLDS00019","interpro_description":"Glutathione transferase family","interpro_id":"IPR040079","interpro_name":"Glutathione_S-Trfase","locations":[{"end":195,"start":5}],"match_end":195,"match_start":5,"name":"Glutathione_Transferase_(cyto"}],"location":{"chromosome_name":"supercont5.2","end_pos":3607444,"start_pos":3606480,"strand":"forward"},"ortholog_annotations":[{"gene_uniquename":"SJAG_03863","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:3212","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03863","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:3212","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03863","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:3213","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03863","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:3213","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03863","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC460.02c","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03863","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC1183.02","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03863","ortholog_taxonid":4932,"ortholog_uniquename":"YGR201C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03863","ortholog_taxonid":4932,"ortholog_uniquename":"YGR201C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03863","ortholog_taxonid":4932,"ortholog_uniquename":"YGR201C","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03863","ortholog_taxonid":4932,"ortholog_uniquename":"YKL081W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03863","ortholog_taxonid":4932,"ortholog_uniquename":"YKL081W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03863","ortholog_taxonid":4932,"ortholog_uniquename":"YPL048W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03863","ortholog_taxonid":4932,"ortholog_uniquename":"YPL048W","reference_uniquename":"PMID:29761456"}],"product":"glutathione S-transferase","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0004364"]}},"subset_termids":["GO:0005634","GO:0016765","GO:0005829","GO:0002181"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0002182":null,"GO:0004364":null,"GO:0005634":null,"GO:0005829":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03863.1"],"transcripts_by_uniquename":{"SJAG_03863.1":null},"uniprot_identifier":"B6K594","uniquename":"SJAG_03863"}


id: SJAG_03864
data:
  {"coiled_coil_coords":[{"range":{"end":132,"start":105}}],"cv_annotations":{"biological_process":[{"annotations":[79268],"is_not":false,"summary":null,"term":"GO:0006893"},{"annotations":[67483],"is_not":false,"summary":null,"term":"GO:0006886"},{"annotations":[67482],"is_not":false,"summary":null,"term":"GO:0090522"}],"cellular_component":[{"annotations":[79266],"is_not":false,"summary":null,"term":"GO:0000145"}],"mondo":[{"annotations":[88054],"is_not":false,"summary":null,"term":"MONDO:0032724"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_03864","InterPro:IPR042045","UniProtKB/TrEMBL:B6K595","InterPro:IPR007191","InterPro:IPR042044","InterPro:IPR007225","EnsemblGenomes-Tr:EEB08699","GOA:B6K595"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"set13","uniquename":"SJAG_03869"},{"name":"scn3","uniquename":"SJAG_03868"},{"name":"mis16","uniquename":"SJAG_03867"},{"uniquename":"SJAG_03866"},{"name":"get4","uniquename":"SJAG_03865"},{"name":"sec15","uniquename":"SJAG_03864"},{"uniquename":"SJAG_03863"},{"name":"fxn1","uniquename":"SJAG_03862"},{"name":"gcv2","uniquename":"SJAG_03861"},{"uniquename":"SJAG_03860"},{"name":"rps6a","uniquename":"SJAG_03859"}],"genes_by_uniquename":{"HGNC:17085":null,"HGNC:23196":null,"SJAG_03864":null,"SPCC1183.01":null,"YGL233W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Exocyst complex component EXOC6/Sec15, N-terminal","id":"PF20651","interpro_description":"Exocyst complex component EXOC6/Sec15, N-terminal domain","interpro_id":"IPR048359","interpro_name":"EXOC6_Sec15_N","locations":[{"end":213,"start":44}],"match_end":213,"match_start":44,"name":"EXOC6_Sec15_N"},{"dbname":"PFAM","description":"Exocyst complex subunit Sec15 C-terminal","id":"PF04091","interpro_description":"Exocyst complex subunit EXOC6/Sec15, C-terminal","interpro_id":"IPR046361","interpro_name":"EXOC6/Sec15_C","locations":[{"end":742,"start":392}],"match_end":742,"match_start":392,"name":"Sec15_C"},{"dbname":"FUNFAM","description":"Exocyst complex component","id":"G3DSA:1.20.58.670:FF:000002","locations":[{"end":718,"start":577}],"match_end":718,"match_start":577},{"dbname":"GENE3D","id":"G3DSA:1.10.357.30","interpro_description":"Exocyst complex component EXOC6/Sec15, C-terminal, domain 1","interpro_id":"IPR042045","interpro_name":"EXOC6/Sec15_C_dom1","locations":[{"end":556,"start":390}],"match_end":556,"match_start":390},{"dbname":"GENE3D","id":"G3DSA:1.20.58.670","interpro_description":"EXOC6/PINT-1/Sec15/Tip20, C-terminal, domain 2","interpro_id":"IPR042044","interpro_name":"EXOC6PINT-1/Sec15/Tip20_C_dom2","locations":[{"end":718,"start":577}],"match_end":718,"match_start":577,"name":"Dsl1p vesicle tethering complex, Tip20p subunit, domain D"},{"dbname":"PANTHER","id":"PTHR12702","interpro_description":"Exocyst complex component EXOC6/Sec15","interpro_id":"IPR007225","interpro_name":"EXOC6/Sec15","locations":[{"end":771,"start":16}],"match_end":771,"match_start":16,"name":"SEC15"},{"dbname":"PIRSF","id":"PIRSF025007","interpro_description":"Exocyst complex component EXOC6/Sec15","interpro_id":"IPR007225","interpro_name":"EXOC6/Sec15","locations":[{"end":778,"start":1}],"match_end":778,"match_start":1,"name":"Sec15"},{"dbname":"COILS","id":"Coil","locations":[{"end":132,"start":105}],"match_end":132,"match_start":105,"name":"Coil"}],"location":{"chromosome_name":"supercont5.2","end_pos":3606173,"start_pos":3603435,"strand":"forward"},"name":"sec15","ortholog_annotations":[{"gene_uniquename":"SJAG_03864","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:17085","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03864","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:23196","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03864","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC1183.01","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03864","ortholog_taxonid":4932,"ortholog_uniquename":"YGL233W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03864","ortholog_taxonid":4932,"ortholog_uniquename":"YGL233W","reference_uniquename":"PMID:26896847"}],"product":"exocyst complex subunit Exo6","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["MONDO:0005497","GO:0016192","GO:0005938","MONDO:0006025"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000145":null,"GO:0006886":null,"GO:0006893":null,"GO:0090522":null,"MONDO:0032724":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03864.1"],"transcripts_by_uniquename":{"SJAG_03864.1":null},"uniprot_identifier":"B6K595","uniquename":"SJAG_03864"}


id: SJAG_03865
data:
  {"cv_annotations":{"biological_process":[{"annotations":[117093],"is_not":false,"summary":null,"term":"GO:0071816"}],"cellular_component":[{"annotations":[117091],"is_not":false,"summary":null,"term":"GO:0005634"},{"annotations":[117092],"is_not":false,"summary":null,"term":"GO:0072380"}],"mondo":[{"annotations":[87473],"is_not":false,"summary":null,"term":"MONDO:0859356"}]},"dbxrefs":["InterPro:IPR007317","EnsemblGenomes-Tr:EEB08700","GOA:B6K596","UniProtKB/TrEMBL:B6K596","InterPro:IPR011990","EnsemblGenomes-Gn:SJAG_03865"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_06269"},{"name":"set13","uniquename":"SJAG_03869"},{"name":"scn3","uniquename":"SJAG_03868"},{"name":"mis16","uniquename":"SJAG_03867"},{"uniquename":"SJAG_03866"},{"name":"get4","uniquename":"SJAG_03865"},{"name":"sec15","uniquename":"SJAG_03864"},{"uniquename":"SJAG_03863"},{"name":"fxn1","uniquename":"SJAG_03862"},{"name":"gcv2","uniquename":"SJAG_03861"},{"uniquename":"SJAG_03860"}],"genes_by_uniquename":{"HGNC:21690":null,"SJAG_03865":null,"SPCC1672.12c":null,"YOR164C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Golgi to ER traffic protein 4","id":"PF04190","interpro_description":"Golgi to ER traffic protein 4","interpro_id":"IPR007317","interpro_name":"GET4","locations":[{"end":298,"start":37}],"match_end":298,"match_start":37,"name":"GET4"},{"dbname":"GENE3D","id":"G3DSA:1.25.40.10","interpro_description":"Tetratricopeptide-like helical domain superfamily","interpro_id":"IPR011990","interpro_name":"TPR-like_helical_dom_sf","locations":[{"end":299,"start":2}],"match_end":299,"match_start":2,"name":"Tetratricopeptide repeat domain"},{"dbname":"PANTHER","id":"PTHR12875","interpro_description":"Golgi to ER traffic protein 4","interpro_id":"IPR007317","interpro_name":"GET4","locations":[{"end":300,"start":4}],"match_end":300,"match_start":4,"name":"GOLGI TO ER TRAFFIC PROTEIN 4 HOMOLOG"}],"location":{"chromosome_name":"supercont5.2","end_pos":3603187,"start_pos":3601976,"strand":"reverse"},"name":"get4","ortholog_annotations":[{"gene_uniquename":"SJAG_03865","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:21690","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03865","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC1672.12c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03865","ortholog_taxonid":4932,"ortholog_uniquename":"YOR164C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03865","ortholog_taxonid":4932,"ortholog_uniquename":"YOR164C","reference_uniquename":"PMID:26896847"}],"product":"TRC complex subunit Get4","references_by_uniquename":{"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0005634","GO:0061024","GO:0005829","MONDO:0005066","MONDO:0024322"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005634":null,"GO:0071816":null,"GO:0072380":null,"MONDO:0859356":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03865.1"],"transcripts_by_uniquename":{"SJAG_03865.1":null},"uniprot_identifier":"B6K596","uniquename":"SJAG_03865"}


id: SJAG_03866
data:
  {"cv_annotations":{"biological_process":[{"annotations":[82064],"is_not":false,"summary":null,"term":"GO:0006874"},{"annotations":[71341],"is_not":false,"summary":null,"term":"GO:0098655"}],"cellular_component":[{"annotations":[117082],"is_not":false,"summary":null,"term":"GO:0005783"},{"annotations":[82062],"is_not":false,"summary":null,"term":"GO:0016020"}],"molecular_function":[{"annotations":[71332],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[71331],"is_not":false,"summary":null,"term":"GO:0016887"},{"annotations":[82063],"is_not":false,"summary":null,"term":"GO:0019829"},{"annotations":[71339],"is_not":false,"summary":null,"term":"GO:0046872"},{"annotations":[71335],"is_not":false,"summary":null,"term":"GO:0015662"}],"mondo":[{"annotations":[88932],"is_not":false,"summary":null,"term":"MONDO:0014975"},{"annotations":[88868],"is_not":false,"summary":null,"term":"MONDO:0011706"},{"annotations":[88559],"is_not":false,"summary":null,"term":"MONDO:0009935"}]},"dbxrefs":["GOA:B6K597","InterPro:IPR023214","InterPro:IPR023298","InterPro:IPR036412","InterPro:IPR018303","InterPro:IPR001757","InterPro:IPR023299","UniProtKB/TrEMBL:B6K597","InterPro:IPR008250","InterPro:IPR004014","EnsemblGenomes-Tr:EEB08701","InterPro:IPR006544","EnsemblGenomes-Gn:SJAG_03866"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_03871"},{"uniquename":"SJAG_06269"},{"name":"set13","uniquename":"SJAG_03869"},{"name":"scn3","uniquename":"SJAG_03868"},{"name":"mis16","uniquename":"SJAG_03867"},{"uniquename":"SJAG_03866"},{"name":"get4","uniquename":"SJAG_03865"},{"name":"sec15","uniquename":"SJAG_03864"},{"uniquename":"SJAG_03863"},{"name":"fxn1","uniquename":"SJAG_03862"},{"name":"gcv2","uniquename":"SJAG_03861"}],"genes_by_uniquename":{"HGNC:24113":null,"HGNC:30213":null,"HGNC:31789":null,"SJAG_03866":null,"SPCC1672.11c":null,"YOR291W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Cation transport ATPase (P-type)","id":"PF13246","locations":[{"end":787,"start":713}],"match_end":787,"match_start":713,"name":"Cation_ATPase"},{"dbname":"PFAM","description":"P5-type ATPase cation transporter","id":"PF12409","interpro_description":"P5B-type ATPase, N-terminal","interpro_id":"IPR047819","interpro_name":"P5A-ATPase_N","locations":[{"end":266,"start":148}],"match_end":266,"match_start":148,"name":"P5-ATPase"},{"dbname":"PFAM","description":"Cation transporter/ATPase, N-terminus","id":"PF00690","interpro_description":"Cation-transporting P-type ATPase, N-terminal","interpro_id":"IPR004014","interpro_name":"ATPase_P-typ_cation-transptr_N","locations":[{"end":341,"start":289}],"match_end":341,"match_start":289,"name":"Cation_ATPase_N"},{"dbname":"PFAM","description":"E1-E2 ATPase","id":"PF00122","locations":[{"end":593,"start":384}],"match_end":593,"match_start":384,"name":"E1-E2_ATPase"},{"dbname":"CDD","description":"P-type_ATPase_cation","id":"cd07542","interpro_description":"P5B-type ATPase","interpro_id":"IPR047821","interpro_name":"P5B-type_ATPase","locations":[{"end":1178,"start":297}],"match_end":1178,"match_start":297,"name":"P-type_ATPase_cation"},{"dbname":"PROSITE_PATTERNS","description":"E1-E2 ATPases phosphorylation site.","id":"PS00154","interpro_description":"P-type ATPase, phosphorylation site","interpro_id":"IPR018303","interpro_name":"ATPase_P-typ_P_site","locations":[{"end":621,"start":615}],"match_end":621,"match_start":615,"name":"ATPASE_E1_E2"},{"dbname":"PROSITE_PATTERNS","description":"Hypothetical cof family signature 2.","id":"PS01229","locations":[{"end":1030,"start":1008}],"match_end":1030,"match_start":1008,"name":"COF_2"},{"dbname":"PRINTS","description":"P-type cation-transporting ATPase superfamily signature","id":"PR00119","locations":[{"end":445,"start":431},{"end":627,"start":613},{"end":1027,"start":1008}],"match_end":1027,"match_start":431,"name":"CATATPASE"},{"dbname":"FUNFAM","description":"Cation-transporting ATPase","id":"G3DSA:1.20.1110.10:FF:000032","locations":[{"end":628,"start":522}],"match_end":628,"match_start":522},{"dbname":"FUNFAM","description":"Cation-transporting ATPase","id":"G3DSA:2.70.150.10:FF:000119","locations":[{"end":513,"start":286}],"match_end":513,"match_start":286},{"dbname":"FUNFAM","description":"Cation-transporting ATPase","id":"G3DSA:3.40.1110.10:FF:000057","locations":[{"end":841,"start":732}],"match_end":841,"match_start":732},{"dbname":"FUNFAM","description":"Cation-transporting ATPase","id":"G3DSA:3.40.50.1000:FF:000068","locations":[{"end":1042,"start":842}],"match_end":1042,"match_start":842},{"dbname":"SUPERFAMILY","id":"SSF56784","interpro_description":"HAD-like superfamily","interpro_id":"IPR036412","interpro_name":"HAD-like_sf","locations":[{"end":892,"start":834},{"end":1053,"start":954}],"match_end":1053,"match_start":834,"name":"HAD-like"},{"dbname":"SUPERFAMILY","id":"SSF81660","interpro_description":"P-type ATPase, cytoplasmic domain N","interpro_id":"IPR023299","interpro_name":"ATPase_P-typ_cyto_dom_N","locations":[{"end":699,"start":619},{"end":850,"start":738}],"match_end":850,"match_start":619,"name":"Metal cation-transporting ATPase, ATP-binding domain N"},{"dbname":"SUPERFAMILY","id":"SSF81653","interpro_description":"P-type ATPase, A domain superfamily","interpro_id":"IPR008250","interpro_name":"ATPase_P-typ_transduc_dom_A_sf","locations":[{"end":512,"start":385}],"match_end":512,"match_start":385,"name":"Calcium ATPase, transduction domain A"},{"dbname":"SUPERFAMILY","id":"SSF81665","interpro_description":"P-type ATPase, transmembrane domain superfamily","interpro_id":"IPR023298","interpro_name":"ATPase_P-typ_TM_dom_sf","locations":[{"end":384,"start":289},{"end":607,"start":510},{"end":1266,"start":1055}],"match_end":1266,"match_start":289,"name":"Calcium ATPase, transmembrane domain M"},{"dbname":"GENE3D","id":"G3DSA:2.70.150.10","locations":[{"end":513,"start":359}],"match_end":513,"match_start":359},{"dbname":"GENE3D","id":"G3DSA:3.40.50.1000","interpro_description":"HAD superfamily","interpro_id":"IPR023214","interpro_name":"HAD_sf","locations":[{"end":1042,"start":842}],"match_end":1042,"match_start":842},{"dbname":"GENE3D","id":"G3DSA:3.40.1110.10","interpro_description":"P-type ATPase, cytoplasmic domain N","interpro_id":"IPR023299","interpro_name":"ATPase_P-typ_cyto_dom_N","locations":[{"end":841,"start":698}],"match_end":841,"match_start":698},{"dbname":"GENE3D","id":"G3DSA:1.20.1110.10","locations":[{"end":626,"start":525}],"match_end":626,"match_start":525},{"dbname":"PANTHER","id":"PTHR45630","interpro_description":"P-type ATPase, subfamily V","interpro_id":"IPR006544","interpro_name":"P-type_TPase_V","locations":[{"end":1272,"start":135}],"match_end":1272,"match_start":135,"name":"CATION-TRANSPORTING ATPASE-RELATED"},{"dbname":"NCBIFAM","description":"ATP13A2 family polyamine export P-type ATPase","id":"TIGR01657","interpro_description":"P-type ATPase, subfamily V","interpro_id":"IPR006544","interpro_name":"P-type_TPase_V","locations":[{"end":1253,"start":152}],"match_end":1253,"match_start":152,"name":"P-ATPase-V"},{"dbname":"NCBIFAM","description":"HAD-IC family P-type ATPase","id":"TIGR01494","interpro_description":"P-type ATPase","interpro_id":"IPR001757","interpro_name":"P_typ_ATPase","locations":[{"end":1088,"start":979}],"match_end":1088,"match_start":979,"name":"ATPase_P-type"},{"dbname":"SFLD","description":"C1.7: P-type atpase like","id":"SFLDG00002","locations":[{"end":1057,"start":594}],"match_end":1057,"match_start":594,"name":"C1.7:_P-type_atpase_like"},{"dbname":"SFLD","description":"p-type atpase","id":"SFLDF00027","interpro_description":"P-type ATPase, haloacid dehalogenase domain","interpro_id":"IPR044492","interpro_name":"P_typ_ATPase_HD_dom","locations":[{"end":1057,"start":594}],"match_end":1057,"match_start":594,"name":"p-type_atpase"}],"location":{"chromosome_name":"supercont5.2","end_pos":3601525,"start_pos":3597596,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":119,"start":108}},{"range":{"end":364,"start":350}},{"range":{"end":707,"start":696}},{"range":{"end":1157,"start":1142}},{"range":{"end":1261,"start":1254}}],"ortholog_annotations":[{"gene_uniquename":"SJAG_03866","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:24113","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03866","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:30213","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03866","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:31789","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03866","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC1672.11c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03866","ortholog_taxonid":4932,"ortholog_uniquename":"YOR291W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03866","ortholog_taxonid":4932,"ortholog_uniquename":"YOR291W","reference_uniquename":"PMID:26896847"}],"product":"P-type ATPase P5 type","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524","GO:0046872"],"not-binding":["GO:0015662","GO:0019829","GO:0016887"]}},"subset_termids":["MONDO:0005559","GO:0022857","GO:0098771","GO:0016887","GO:0005783","MONDO:0005267","MONDO:0002039","MONDO:0006025","GO:0055085","MONDO:0005066"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005524":null,"GO:0005783":null,"GO:0006874":null,"GO:0015662":null,"GO:0016020":null,"GO:0016887":null,"GO:0019829":null,"GO:0046872":null,"GO:0098655":null,"MONDO:0009935":null,"MONDO:0011706":null,"MONDO:0014975":null},"tm_domain_coords":[{"assigned_by":"TMHMM","range":{"end":186,"start":164}},{"assigned_by":"TMHMM","range":{"end":366,"start":347}},{"assigned_by":"TMHMM","range":{"end":552,"start":530}},{"assigned_by":"TMHMM","range":{"end":589,"start":567}},{"assigned_by":"TMHMM","range":{"end":1080,"start":1058}},{"assigned_by":"TMHMM","range":{"end":1112,"start":1095}},{"assigned_by":"TMHMM","range":{"end":1155,"start":1133}},{"assigned_by":"TMHMM","range":{"end":1200,"start":1178}},{"assigned_by":"TMHMM","range":{"end":1229,"start":1207}},{"assigned_by":"TMHMM","range":{"end":1276,"start":1254}}],"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03866.1"],"transcripts_by_uniquename":{"SJAG_03866.1":null},"uniprot_identifier":"B6K597","uniquename":"SJAG_03866"}


id: SJAG_03867
data:
  {"cv_annotations":{"biological_process":[{"annotations":[117078],"is_not":false,"summary":null,"term":"GO:0034080"},{"annotations":[77716],"is_not":false,"summary":null,"term":"GO:0006355"}],"cellular_component":[{"annotations":[117073],"is_not":false,"summary":null,"term":"GO:0098654"},{"annotations":[77711],"is_not":false,"summary":null,"term":"GO:0005737"},{"annotations":[117076],"is_not":false,"summary":null,"term":"GO:0000776"},{"annotations":[77713],"is_not":false,"summary":null,"term":"GO:0033698"},{"annotations":[77714],"is_not":false,"summary":null,"term":"GO:0070210"}],"molecular_function":[{"annotations":[117080],"is_not":false,"summary":null,"term":"GO:0140463"},{"annotations":[117081],"is_not":false,"summary":null,"term":"GO:0000510"},{"annotations":[77712],"is_not":false,"summary":null,"term":"GO:0042393"}],"mondo":[{"annotations":[87931],"is_not":false,"summary":null,"term":"MONDO:0976123"}]},"dbxrefs":["InterPro:IPR015943","GOA:B6K598","InterPro:IPR001680","PDB:4XYH","PDB:4XYI","InterPro:IPR036322","InterPro:IPR017986","InterPro:IPR020472","InterPro:IPR022052","UniProtKB/TrEMBL:B6K598","EnsemblGenomes-Gn:SJAG_03867","InterPro:IPR019775","EnsemblGenomes-Tr:EEB08702"],"deletion_viability":"unknown","feature_publications":[{"reference_uniquename":"PMID:26343758","source":"canto"}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"pno1","uniquename":"SJAG_03872"},{"uniquename":"SJAG_03871"},{"uniquename":"SJAG_06269"},{"name":"set13","uniquename":"SJAG_03869"},{"name":"scn3","uniquename":"SJAG_03868"},{"name":"mis16","uniquename":"SJAG_03867"},{"uniquename":"SJAG_03866"},{"name":"get4","uniquename":"SJAG_03865"},{"name":"sec15","uniquename":"SJAG_03864"},{"uniquename":"SJAG_03863"},{"name":"fxn1","uniquename":"SJAG_03862"}],"genes_by_uniquename":{"HGNC:9887":null,"HGNC:9890":null,"SJAG_03867":null,"SPCC1672.10":null,"YEL056W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Histone-binding protein RBBP4 or subunit C of CAF1 complex","id":"PF12265","interpro_description":"Histone-binding protein RBBP4-like, N-terminal","interpro_id":"IPR022052","interpro_name":"Histone-bd_RBBP4-like_N","locations":[{"end":95,"start":25}],"match_end":95,"match_start":25,"name":"CAF1C_H4-bd"},{"dbname":"PFAM","description":"WD domain, G-beta repeat","id":"PF00400","interpro_description":"WD40 repeat","interpro_id":"IPR001680","interpro_name":"WD40_rpt","locations":[{"end":261,"start":224},{"end":307,"start":273},{"end":351,"start":313},{"end":408,"start":376}],"match_end":408,"match_start":224,"name":"WD40"},{"dbname":"PROSITE_PATTERNS","description":"Trp-Asp (WD) repeats signature.","id":"PS00678","interpro_description":"WD40 repeat, conserved site","interpro_id":"IPR019775","interpro_name":"WD40_repeat_CS","locations":[{"end":209,"start":195},{"end":308,"start":294},{"end":352,"start":338}],"match_end":352,"match_start":195,"name":"WD_REPEATS_1"},{"dbname":"PROSITE_PROFILES","description":"Trp-Asp (WD) repeats circular profile.","id":"PS50294","locations":[{"end":309,"start":274},{"end":353,"start":318},{"end":408,"start":375}],"match_end":408,"match_start":274,"name":"WD_REPEATS_REGION"},{"dbname":"PROSITE_PROFILES","description":"Trp-Asp (WD) repeats profile.","id":"PS50082","interpro_description":"WD40 repeat","interpro_id":"IPR001680","interpro_name":"WD40_rpt","locations":[{"end":309,"start":274},{"end":360,"start":318},{"end":408,"start":375}],"match_end":408,"match_start":274,"name":"WD_REPEATS_2"},{"dbname":"SMART","id":"SM00320","interpro_description":"WD40 repeat","interpro_id":"IPR001680","interpro_name":"WD40_rpt","locations":[{"end":157,"start":118},{"end":208,"start":168},{"end":261,"start":221},{"end":307,"start":267},{"end":351,"start":311},{"end":408,"start":368}],"match_end":408,"match_start":118,"name":"WD40_4"},{"dbname":"PRINTS","description":"G protein beta WD-40 repeat signature","id":"PR00320","interpro_description":"PAC1/LIS1-like, WD-40 repeat","interpro_id":"IPR020472","interpro_name":"WD40_PAC1","locations":[{"end":209,"start":195},{"end":308,"start":294},{"end":352,"start":338}],"match_end":352,"match_start":195,"name":"GPROTEINBRPT"},{"dbname":"SUPERFAMILY","id":"SSF50978","interpro_description":"WD40-repeat-containing domain superfamily","interpro_id":"IPR036322","interpro_name":"WD40_repeat_dom_sf","locations":[{"end":411,"start":126}],"match_end":411,"match_start":126,"name":"WD40 repeat-like"},{"dbname":"GENE3D","id":"G3DSA:2.130.10.10","interpro_description":"WD40/YVTN repeat-like-containing domain superfamily","interpro_id":"IPR015943","interpro_name":"WD40/YVTN_repeat-like_dom_sf","locations":[{"end":427,"start":14}],"match_end":427,"match_start":14},{"dbname":"PANTHER","id":"PTHR22850","interpro_description":"WD repeat RBAP46/RBAP48/MSI1","interpro_id":"IPR050459","interpro_name":"WD_repeat_RBAP46/RBAP48/MSI1","locations":[{"end":414,"start":19}],"match_end":414,"match_start":19,"name":"WD40 REPEAT FAMILY"}],"location":{"chromosome_name":"supercont5.2","end_pos":3597374,"start_pos":3595968,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":102,"start":96}}],"name":"mis16","ortholog_annotations":[{"gene_uniquename":"SJAG_03867","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:9887","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03867","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:9890","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03867","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC1672.10","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03867","ortholog_taxonid":4932,"ortholog_uniquename":"YEL056W","reference_uniquename":"PMID:29761456"}],"pdb_entries":[{"entry_authors":"An S,Kim H,Cho U-S","entry_authors_abbrev":"An S et al.","experimental_method":"X-ray","gene_chains":[{"chain":"A","gene_uniquename":"SJAG_03867","position":"1-427"}],"pdb_id":"4xyh","reference_uniquename":"PMID:26343758","resolution":"2.3","title":"Wild-type full length Mis16 in Schizosaccharomyces japonicus"},{"entry_authors":"An S,Kim H,Cho U-S","entry_authors_abbrev":"An S et al.","experimental_method":"X-ray","gene_chains":[{"chain":"A","gene_uniquename":"SJAG_03867","position":"1-427"}],"pdb_id":"4xyi","reference_uniquename":"PMID:26343758","resolution":"3.0","title":"Mis16 with H4 peptide"}],"product":"histone H4 chaperone, CENP-A recruiting complex CENP-A chaperone, WD repeat subunit Mis16","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26343758":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0042393"],"not-binding":["GO:0000510","GO:0140463"]}},"subset_termids":["GO:0060090","GO:0005634","GO:0006325","GO:0006351","GO:0006355","GO:0000776","GO:0065003","GO:0140104","GO:0005654","MONDO:0005047","GO:0005694"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000510":null,"GO:0000776":null,"GO:0005737":null,"GO:0006355":null,"GO:0033698":null,"GO:0034080":null,"GO:0042393":null,"GO:0070210":null,"GO:0098654":null,"GO:0140463":null,"MONDO:0976123":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03867.1"],"transcripts_by_uniquename":{"SJAG_03867.1":null},"uniprot_identifier":"B6K598","uniquename":"SJAG_03867"}


id: SJAG_03868
data:
  {"cv_annotations":{"cellular_component":[{"annotations":[101280],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[101281],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[67567],"is_not":false,"summary":null,"term":"GO:0016788"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_03868","GOA:B6K599","UniProtKB/TrEMBL:B6K599","InterPro:IPR032466","EnsemblGenomes-Tr:EEB08703","InterPro:IPR001130"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"csc4","uniquename":"SJAG_06270"},{"name":"pno1","uniquename":"SJAG_03872"},{"uniquename":"SJAG_03871"},{"uniquename":"SJAG_06269"},{"name":"set13","uniquename":"SJAG_03869"},{"name":"scn3","uniquename":"SJAG_03868"},{"name":"mis16","uniquename":"SJAG_03867"},{"uniquename":"SJAG_03866"},{"name":"get4","uniquename":"SJAG_03865"},{"name":"sec15","uniquename":"SJAG_03864"},{"uniquename":"SJAG_03863"}],"genes_by_uniquename":{"HGNC:24220":null,"SJAG_03868":null,"SPAC688.13":null,"YMR262W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"TatD related DNase","id":"PF01026","interpro_description":"3'-5' ssDNA/RNA exonuclease TatD-like","interpro_id":"IPR001130","interpro_name":"TatD-like","locations":[{"end":271,"start":7}],"match_end":271,"match_start":7,"name":"TatD_DNase"},{"dbname":"SUPERFAMILY","id":"SSF51556","interpro_description":"Metal-dependent hydrolase","interpro_id":"IPR032466","interpro_name":"Metal_Hydrolase","locations":[{"end":72,"start":6},{"end":205,"start":115},{"end":271,"start":232}],"match_end":271,"match_start":6,"name":"Metallo-dependent hydrolases"},{"dbname":"GENE3D","id":"G3DSA:3.20.20.140","locations":[{"end":85,"start":2},{"end":286,"start":116}],"match_end":286,"match_start":2},{"dbname":"PANTHER","id":"PTHR47345","interpro_description":"Metallo-dependent Hydrolase/TatD-type","interpro_id":"IPR053044","interpro_name":"Metallo-hydrolase/TatD-type","locations":[{"end":283,"start":3}],"match_end":283,"match_start":3,"name":"CUT9-INTERACTING PROTEIN SCN1"}],"location":{"chromosome_name":"supercont5.2","end_pos":3595600,"start_pos":3594734,"strand":"reverse"},"name":"scn3","ortholog_annotations":[{"gene_uniquename":"SJAG_03868","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:24220","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03868","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC688.13","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03868","ortholog_taxonid":4932,"ortholog_uniquename":"YMR262W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03868","ortholog_taxonid":4932,"ortholog_uniquename":"YMR262W","reference_uniquename":"PMID:26896847"}],"product":"TatD DNase family Scn1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0016788"]}},"subset_termids":["GO:0016788","GO:0005829","GO:0005634"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005634":null,"GO:0005829":null,"GO:0016788":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03868.1"],"transcripts_by_uniquename":{"SJAG_03868.1":null},"uniprot_identifier":"B6K599","uniquename":"SJAG_03868"}


id: SJAG_03869
data:
  {"cv_annotations":{"biological_process":[{"annotations":[101284],"is_not":false,"summary":null,"term":"GO:1990625"}],"cellular_component":[{"annotations":[73914],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[73915],"is_not":false,"summary":null,"term":"GO:0016279"}]},"dbxrefs":["GOA:B6K5A0","InterPro:IPR001214","InterPro:IPR011383","UniProtKB/TrEMBL:B6K5A0","EnsemblGenomes-Tr:EEB08704","EnsemblGenomes-Gn:SJAG_03869"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":219,"start":189}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_03873"},{"name":"csc4","uniquename":"SJAG_06270"},{"name":"pno1","uniquename":"SJAG_03872"},{"uniquename":"SJAG_03871"},{"uniquename":"SJAG_06269"},{"name":"set13","uniquename":"SJAG_03869"},{"name":"scn3","uniquename":"SJAG_03868"},{"name":"mis16","uniquename":"SJAG_03867"},{"uniquename":"SJAG_03866"},{"name":"get4","uniquename":"SJAG_03865"},{"name":"sec15","uniquename":"SJAG_03864"}],"genes_by_uniquename":{"HGNC:26116":null,"SJAG_03869":null,"SPAC688.14":null,"YBR030W":null,"YDR257C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"SET domain","id":"PF00856","interpro_description":"SET domain","interpro_id":"IPR001214","interpro_name":"SET_dom","locations":[{"end":273,"start":37}],"match_end":273,"match_start":37,"name":"SET"},{"dbname":"PROSITE_PROFILES","description":"SET domain profile.","id":"PS50280","interpro_description":"SET domain","interpro_id":"IPR001214","interpro_name":"SET_dom","locations":[{"end":273,"start":22}],"match_end":273,"match_start":22,"name":"SET"},{"dbname":"SUPERFAMILY","id":"SSF82199","interpro_description":"SET domain superfamily","interpro_id":"IPR046341","interpro_name":"SET_dom_sf","locations":[{"end":188,"start":5},{"end":290,"start":228}],"match_end":290,"match_start":5,"name":"SET domain"},{"dbname":"GENE3D","id":"G3DSA:3.90.1410.10","locations":[{"end":287,"start":3}],"match_end":287,"match_start":3,"name":"set domain protein methyltransferase, domain 1"},{"dbname":"PANTHER","id":"PTHR13271","interpro_description":"SETD3/SETD6 methyltransferase","interpro_id":"IPR050600","interpro_name":"SETD3_SETD6_MTase","locations":[{"end":317,"start":5}],"match_end":317,"match_start":5,"name":"UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE"},{"dbname":"PIRSF","id":"PIRSF011771","interpro_description":"N-lysine methyltransferase SETD6","interpro_id":"IPR011383","interpro_name":"N-lys_methylase_SETD6","locations":[{"end":439,"start":1}],"match_end":439,"match_start":1,"name":"RMS1_SET"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":219,"start":189}],"match_end":219,"match_start":189,"name":"disorder_prediction"},{"dbname":"MOBIDB-Negative-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Negative-Polyelectrolyte","locations":[{"end":219,"start":210}],"match_end":219,"match_start":210,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":209,"start":197}],"match_end":209,"match_start":197,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3594492,"start_pos":3593091,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":222,"start":199}},{"range":{"end":326,"start":311}}],"name":"set13","ortholog_annotations":[{"gene_uniquename":"SJAG_03869","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:26116","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03869","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC688.14","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03869","ortholog_taxonid":4932,"ortholog_uniquename":"YBR030W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03869","ortholog_taxonid":4932,"ortholog_uniquename":"YDR257C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03869","ortholog_taxonid":4932,"ortholog_uniquename":"YDR257C","reference_uniquename":"PMID:26896847"}],"product":"ribosome L32 lysine methyltransferase Set13","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0016279"]}},"subset_termids":["GO:0002181","GO:0140096","GO:0005634","GO:0016741","GO:0008276"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005634":null,"GO:0016279":null,"GO:1990625":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03869.1"],"transcripts_by_uniquename":{"SJAG_03869.1":null},"uniprot_identifier":"B6K5A0","uniquename":"SJAG_03869"}


id: SJAG_03871
data:
  {"cv_annotations":{"biological_process":[{"annotations":[100729],"is_not":false,"summary":null,"term":"GO:0018279"}],"cellular_component":[{"annotations":[100696],"is_not":false,"summary":null,"term":"GO:0005783"},{"annotations":[73421],"is_not":false,"summary":null,"term":"GO:0000139"}],"molecular_function":[{"annotations":[100733],"is_not":false,"summary":null,"term":"GO:0031278"}]},"dbxrefs":["InterPro:IPR008630","GOA:B6K5A1","EnsemblGenomes-Gn:SJAG_03871","EnsemblGenomes-Tr:EEB08705","UniProtKB/TrEMBL:B6K5A1"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_03875"},{"uniquename":"SJAG_03874"},{"uniquename":"SJAG_03873"},{"name":"csc4","uniquename":"SJAG_06270"},{"name":"pno1","uniquename":"SJAG_03872"},{"uniquename":"SJAG_03871"},{"uniquename":"SJAG_06269"},{"name":"set13","uniquename":"SJAG_03869"},{"name":"scn3","uniquename":"SJAG_03868"},{"name":"mis16","uniquename":"SJAG_03867"},{"uniquename":"SJAG_03866"}],"genes_by_uniquename":{"SJAG_03871":null,"SPAC22E12.06c":null,"SPAC5H10.11":null,"SPAC5H10.13c":null,"YDR245W":null,"YJL183W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"galactosyl transferase GMA12/MNN10 family","id":"PF05637","interpro_description":"Glycosyltransferase 34","interpro_id":"IPR008630","interpro_name":"Glyco_trans_34","locations":[{"end":306,"start":69}],"match_end":306,"match_start":69,"name":"Glyco_transf_34"},{"dbname":"FUNFAM","description":"Alpha-1,6-mannosyltransferase subunit","id":"G3DSA:3.90.550.10:FF:000149","locations":[{"end":308,"start":71}],"match_end":308,"match_start":71},{"dbname":"GENE3D","id":"G3DSA:3.90.550.10","interpro_description":"Nucleotide-diphospho-sugar transferases","interpro_id":"IPR029044","interpro_name":"Nucleotide-diphossugar_trans","locations":[{"end":183,"start":77}],"match_end":183,"match_start":77,"name":"Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A"},{"dbname":"PANTHER","id":"PTHR31306","interpro_description":"Glycosyltransferase 34","interpro_id":"IPR008630","interpro_name":"Glyco_trans_34","locations":[{"end":317,"start":2}],"match_end":317,"match_start":2,"name":"ALPHA-1,6-MANNOSYLTRANSFERASE MNN11-RELATED"}],"location":{"chromosome_name":"supercont5.2","end_pos":3591044,"start_pos":3590076,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":21,"start":7}}],"ortholog_annotations":[{"gene_uniquename":"SJAG_03871","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC22E12.06c","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03871","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC5H10.11","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03871","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC5H10.13c","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03871","ortholog_taxonid":4932,"ortholog_uniquename":"YDR245W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03871","ortholog_taxonid":4932,"ortholog_uniquename":"YDR245W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03871","ortholog_taxonid":4932,"ortholog_uniquename":"YDR245W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03871","ortholog_taxonid":4932,"ortholog_uniquename":"YJL183W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03871","ortholog_taxonid":4932,"ortholog_uniquename":"YJL183W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03871","ortholog_taxonid":4932,"ortholog_uniquename":"YJL183W","reference_uniquename":"PMID:29761456"}],"product":"nucleotide-diphospho-sugar transferase, unknown specificity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0031278"]}},"subset_termids":["GO:0016757","GO:0005794","GO:0005783"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000139":null,"GO:0005783":null,"GO:0018279":null,"GO:0031278":null},"tm_domain_coords":[{"assigned_by":"TMHMM","range":{"end":29,"start":7}}],"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03871.1"],"transcripts_by_uniquename":{"SJAG_03871.1":null},"uniprot_identifier":"B6K5A1","uniquename":"SJAG_03871"}


id: SJAG_03872
data:
  {"cv_annotations":{"biological_process":[{"annotations":[97592],"is_not":false,"summary":null,"term":"GO:0006364"}],"cellular_component":[{"annotations":[97589],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[61902],"is_not":false,"summary":null,"term":"GO:0005730"}],"molecular_function":[{"annotations":[61901],"is_not":false,"summary":null,"term":"GO:0003723"}]},"dbxrefs":["InterPro:IPR036612","InterPro:IPR039912","UniProtKB/TrEMBL:B6K5A2","GOA:B6K5A2","EnsemblGenomes-Tr:EEB08706","EnsemblGenomes-Gn:SJAG_03872"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":85,"start":31}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"dis32","uniquename":"SJAG_03876"},{"uniquename":"SJAG_03875"},{"uniquename":"SJAG_03874"},{"uniquename":"SJAG_03873"},{"name":"csc4","uniquename":"SJAG_06270"},{"name":"pno1","uniquename":"SJAG_03872"},{"uniquename":"SJAG_03871"},{"uniquename":"SJAG_06269"},{"name":"set13","uniquename":"SJAG_03869"},{"name":"scn3","uniquename":"SJAG_03868"},{"name":"mis16","uniquename":"SJAG_03867"}],"genes_by_uniquename":{"HGNC:32790":null,"SJAG_03872":null,"SPAC2C4.11c":null,"YOR145C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Eukaryotic type KH-domain (KH-domain type I) (327.11.2)","id":"PF22891","interpro_description":"PNO1, second type I KH domain","interpro_id":"IPR055211","interpro_name":"KH_PNO1_2nd","locations":[{"end":248,"start":160}],"match_end":248,"match_start":160,"name":"KH_PNO1_2nd"},{"dbname":"CDD","description":"KH-I_PNO1_rpt1","id":"cd22391","interpro_description":"PNO1, first type I KH domain","interpro_id":"IPR055212","interpro_name":"KH-I_PNO1_first","locations":[{"end":153,"start":75}],"match_end":153,"match_start":75,"name":"KH-I_PNO1_rpt1"},{"dbname":"CDD","description":"KH-I_PNO1_rpt2","id":"cd22392","interpro_description":"PNO1, second type I KH domain","interpro_id":"IPR055211","interpro_name":"KH_PNO1_2nd","locations":[{"end":239,"start":155}],"match_end":239,"match_start":155,"name":"KH-I_PNO1_rpt2"},{"dbname":"FUNFAM","description":"RNA-binding protein PNO1","id":"G3DSA:3.30.1370.10:FF:000009","locations":[{"end":253,"start":157}],"match_end":253,"match_start":157},{"dbname":"SUPERFAMILY","id":"SSF54791","interpro_description":"K Homology domain, type 1 superfamily","interpro_id":"IPR036612","interpro_name":"KH_dom_type_1_sf","locations":[{"end":251,"start":158}],"match_end":251,"match_start":158,"name":"Eukaryotic type KH-domain (KH-domain type I)"},{"dbname":"GENE3D","id":"G3DSA:3.30.1370.10","interpro_description":"K Homology domain, type 1 superfamily","interpro_id":"IPR036612","interpro_name":"KH_dom_type_1_sf","locations":[{"end":253,"start":157}],"match_end":253,"match_start":157,"name":"K Homology domain, type 1"},{"dbname":"PANTHER","id":"PTHR12826","locations":[{"end":253,"start":46}],"match_end":253,"match_start":46,"name":"RIBONUCLEASE Y"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":85,"start":31}],"match_end":85,"match_start":31,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3588235,"start_pos":3587474,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":161,"start":145}}],"name":"pno1","ortholog_annotations":[{"gene_uniquename":"SJAG_03872","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:32790","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03872","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2C4.11c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03872","ortholog_taxonid":4932,"ortholog_uniquename":"YOR145C","reference_uniquename":"PMID:29761456"}],"product":"KH domain RNA-binding protein Pno1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"GO_REF:0000117":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003723"]}},"subset_termids":["GO:0005730","GO:0005829","GO:0005634","GO:0042254"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0003723":null,"GO:0005730":null,"GO:0005829":null,"GO:0006364":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03872.1"],"transcripts_by_uniquename":{"SJAG_03872.1":null},"uniprot_identifier":"B6K5A2","uniquename":"SJAG_03872"}


id: SJAG_03873
data:
  {"cv_annotations":{"cellular_component":[{"annotations":[97581],"is_not":false,"summary":null,"term":"GO:0005743"}]},"dbxrefs":["InterPro:IPR024461","GOA:B6K5A3","UniProtKB/TrEMBL:B6K5A3","EnsemblGenomes-Gn:SJAG_03873","EnsemblGenomes-Tr:EEB08707"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"smp3","uniquename":"SJAG_03878"},{"name":"rcm1","uniquename":"SJAG_03877"},{"name":"dis32","uniquename":"SJAG_03876"},{"uniquename":"SJAG_03875"},{"uniquename":"SJAG_03874"},{"uniquename":"SJAG_03873"},{"name":"csc4","uniquename":"SJAG_06270"},{"name":"pno1","uniquename":"SJAG_03872"},{"uniquename":"SJAG_03871"},{"uniquename":"SJAG_06269"},{"name":"set13","uniquename":"SJAG_03869"}],"genes_by_uniquename":{"HGNC:21097":null,"HGNC:28108":null,"SJAG_03873":null,"SPAC2C4.09":null,"YFL046W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Coiled-coil domain-containing protein 90-like","id":"PF07798","interpro_description":"Coiled-coil domain-containing protein 90-like","interpro_id":"IPR024461","interpro_name":"CCDC90-like","locations":[{"end":210,"start":36}],"match_end":210,"match_start":36,"name":"CCDC90-like"},{"dbname":"GENE3D","id":"G3DSA:1.20.5.340","locations":[{"end":133,"start":37}],"match_end":133,"match_start":37},{"dbname":"PANTHER","id":"PTHR14360","interpro_description":"Coiled-coil domain-containing protein 90-like","interpro_id":"IPR024461","interpro_name":"CCDC90-like","locations":[{"end":210,"start":28}],"match_end":210,"match_start":28,"name":"PROTEIN FMP32, MITOCHONDRIAL"}],"location":{"chromosome_name":"supercont5.2","end_pos":3586383,"start_pos":3585583,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":210,"start":200}}],"ortholog_annotations":[{"gene_uniquename":"SJAG_03873","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:21097","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03873","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:28108","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03873","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2C4.09","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03873","ortholog_taxonid":4932,"ortholog_uniquename":"YFL046W","reference_uniquename":"PMID:29761456"}],"product":"mitochondrial protein, implicated in regulation of proline metabolism (S. cerevisiae), and calcium import (human)","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0005739"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005743":null},"tm_domain_coords":[{"assigned_by":"TMHMM","range":{"end":210,"start":188}}],"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03873.1"],"transcripts_by_uniquename":{"SJAG_03873.1":null},"uniprot_identifier":"B6K5A3","uniquename":"SJAG_03873"}


id: SJAG_03874
data:
  {"cv_annotations":{"cellular_component":[{"annotations":[97579],"is_not":false,"summary":null,"term":"GO:0005730"}]},"dbxrefs":["InterPro:IPR040151","UniProtKB/TrEMBL:B6K5A4","EnsemblGenomes-Tr:EEB08708","InterPro:IPR012337","GOA:B6K5A4","EnsemblGenomes-Gn:SJAG_03874","InterPro:IPR036397"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":248,"start":214}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"prz1","uniquename":"SJAG_03879"},{"name":"smp3","uniquename":"SJAG_03878"},{"name":"rcm1","uniquename":"SJAG_03877"},{"name":"dis32","uniquename":"SJAG_03876"},{"uniquename":"SJAG_03875"},{"uniquename":"SJAG_03874"},{"uniquename":"SJAG_03873"},{"name":"csc4","uniquename":"SJAG_06270"},{"name":"pno1","uniquename":"SJAG_03872"},{"uniquename":"SJAG_03871"},{"uniquename":"SJAG_06269"}],"genes_by_uniquename":{"SJAG_03874":null,"SPAC2C4.08":null,"YCL036W":null,"YDR514C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"DNA polymerase III subunit epsilon-like, C-terminal domain","id":"PF21762","interpro_description":"Gfd2/YDR514C-like, C-terminal domain","interpro_id":"IPR048519","interpro_name":"Gfd2/YDR514C-like_C","locations":[{"end":193,"start":32}],"match_end":193,"match_start":32,"name":"DEDDh_C"},{"dbname":"SUPERFAMILY","id":"SSF53098","interpro_description":"Ribonuclease H-like superfamily","interpro_id":"IPR012337","interpro_name":"RNaseH-like_sf","locations":[{"end":196,"start":29}],"match_end":196,"match_start":29,"name":"Ribonuclease H-like"},{"dbname":"PANTHER","id":"PTHR28083","interpro_description":"Gfd2/YDR514C-like","interpro_id":"IPR040151","interpro_name":"Gfd2/YDR514C-like","locations":[{"end":247,"start":15}],"match_end":247,"match_start":15,"name":"GOOD FOR FULL DBP5 ACTIVITY PROTEIN 2"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":248,"start":214}],"match_end":248,"match_start":214,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":248,"start":221}],"match_end":248,"match_start":221,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3585620,"start_pos":3584874,"strand":"forward"},"ortholog_annotations":[{"gene_uniquename":"SJAG_03874","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2C4.08","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03874","ortholog_taxonid":4932,"ortholog_uniquename":"YCL036W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03874","ortholog_taxonid":4932,"ortholog_uniquename":"YCL036W","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03874","ortholog_taxonid":4932,"ortholog_uniquename":"YDR514C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03874","ortholog_taxonid":4932,"ortholog_uniquename":"YDR514C","reference_uniquename":"PMID:26896847"}],"product":"REX family exonuclease, implicated in rDNA metabolism or ribosome biogenesis, potential human ISG20L2 ortholog","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0005730","GO:0005634"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005730":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03874.1"],"transcripts_by_uniquename":{"SJAG_03874.1":null},"uniprot_identifier":"B6K5A4","uniquename":"SJAG_03874"}


id: SJAG_03875
data:
  {"coiled_coil_coords":[{"range":{"end":578,"start":558}}],"cv_annotations":{},"dbxrefs":["EnsemblGenomes-Tr:EEB08709","UniProtKB/TrEMBL:B6K5A5","EnsemblGenomes-Gn:SJAG_03875"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":390,"start":370}},{"range":{"end":482,"start":432}},{"range":{"end":810,"start":788}},{"range":{"end":850,"start":823}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_03880"},{"name":"prz1","uniquename":"SJAG_03879"},{"name":"smp3","uniquename":"SJAG_03878"},{"name":"rcm1","uniquename":"SJAG_03877"},{"name":"dis32","uniquename":"SJAG_03876"},{"uniquename":"SJAG_03875"},{"uniquename":"SJAG_03874"},{"uniquename":"SJAG_03873"},{"name":"csc4","uniquename":"SJAG_06270"},{"name":"pno1","uniquename":"SJAG_03872"},{"uniquename":"SJAG_03871"}],"genes_by_uniquename":{"SJAG_03875":null},"has_protein_features":true,"interpro_matches":[{"dbname":"COILS","id":"Coil","locations":[{"end":578,"start":558}],"match_end":578,"match_start":558,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":390,"start":370},{"end":482,"start":432},{"end":810,"start":788},{"end":850,"start":823}],"match_end":850,"match_start":370,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":383,"start":370},{"end":479,"start":467}],"match_end":479,"match_start":370,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":800,"start":788}],"match_end":800,"match_start":788,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":466,"start":440}],"match_end":466,"match_start":440,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3583673,"start_pos":3581073,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":382,"start":362}},{"range":{"end":478,"start":464}}],"product":"Schizosaccharomyces japonicus specific disordered protein","split_by_parent_groups":{},"taxonid":4897,"taxonomic_distribution":"other","tm_domain_coords":[{"assigned_by":"TMHMM","range":{"end":27,"start":5}}],"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03875.1"],"transcripts_by_uniquename":{"SJAG_03875.1":null},"uniprot_identifier":"B6K5A5","uniquename":"SJAG_03875"}


id: SJAG_03876
data:
  {"binding_sites":[{"assigned_by":"UniProtKB","ligand":"Mg(2+)","range":{"end":370,"start":370}},{"assigned_by":"UniProtKB","ligand":"Mg(2+)","range":{"end":379,"start":379}}],"cv_annotations":{"biological_process":[{"annotations":[68026],"is_not":false,"summary":null,"term":"GO:0000956"},{"annotations":[68029],"is_not":false,"summary":null,"term":"GO:1990074"}],"cellular_component":[{"annotations":[97573],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[79671],"is_not":false,"summary":null,"term":"GO:0000932"}],"molecular_function":[{"annotations":[68025],"is_not":false,"summary":null,"term":"GO:0000175"},{"annotations":[97578],"is_not":false,"summary":null,"term":"GO:0008266"}],"mondo":[{"annotations":[87111],"is_not":false,"summary":null,"term":"MONDO:0009965"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB08710","GOA:B6K5A6","InterPro:IPR012340","InterPro:IPR001900","UniProtKB/TrEMBL:B6K5A6","InterPro:IPR041505","InterPro:IPR028591","InterPro:IPR022966","EnsemblGenomes-Gn:SJAG_03876"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":206,"start":180}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"mta1","uniquename":"SJAG_03881"},{"uniquename":"SJAG_03880"},{"name":"prz1","uniquename":"SJAG_03879"},{"name":"smp3","uniquename":"SJAG_03878"},{"name":"rcm1","uniquename":"SJAG_03877"},{"name":"dis32","uniquename":"SJAG_03876"},{"uniquename":"SJAG_03875"},{"uniquename":"SJAG_03874"},{"uniquename":"SJAG_03873"},{"name":"csc4","uniquename":"SJAG_06270"},{"name":"pno1","uniquename":"SJAG_03872"}],"genes_by_uniquename":{"HGNC:28648":null,"SJAG_03876":null,"SPAC2C4.07c":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"RNB domain","id":"PF00773","interpro_description":"Ribonuclease II/R","interpro_id":"IPR001900","interpro_name":"RNase_II/R","locations":[{"end":703,"start":358}],"match_end":703,"match_start":358,"name":"RNB"},{"dbname":"PFAM","description":"Dis3-like cold-shock domain 2 (CSD2)","id":"PF17849","interpro_description":"Dis3-like cold-shock domain 2","interpro_id":"IPR041505","interpro_name":"Dis3_CSD2","locations":[{"end":328,"start":249}],"match_end":328,"match_start":249,"name":"OB_Dis3"},{"dbname":"PROSITE_PATTERNS","description":"Ribonuclease II family signature.","id":"PS01175","interpro_description":"Ribonuclease II/R, conserved site","interpro_id":"IPR022966","interpro_name":"RNase_II/R_CS","locations":[{"end":695,"start":671}],"match_end":695,"match_start":671,"name":"RIBONUCLEASE_II"},{"dbname":"SMART","id":"SM00955","interpro_description":"Ribonuclease II/R","interpro_id":"IPR001900","interpro_name":"RNase_II/R","locations":[{"end":704,"start":358}],"match_end":704,"match_start":358,"name":"RNB_2"},{"dbname":"SUPERFAMILY","id":"SSF50249","interpro_description":"Nucleic acid-binding, OB-fold","interpro_id":"IPR012340","interpro_name":"NA-bd_OB-fold","locations":[{"end":194,"start":105},{"end":308,"start":249},{"end":746,"start":320}],"match_end":746,"match_start":105,"name":"Nucleic acid-binding proteins"},{"dbname":"GENE3D","id":"G3DSA:2.40.50.700","locations":[{"end":315,"start":223}],"match_end":315,"match_start":223},{"dbname":"GENE3D","id":"G3DSA:2.40.50.690","locations":[{"end":220,"start":97}],"match_end":220,"match_start":97},{"dbname":"PANTHER","id":"PTHR23355","interpro_description":"RNR Ribonuclease","interpro_id":"IPR050180","interpro_name":"RNR_Ribonuclease","locations":[{"end":816,"start":79}],"match_end":816,"match_start":79,"name":"RIBONUCLEASE"},{"dbname":"HAMAP","description":"DIS3-like exonuclease 2 [DIS3L2].","id":"MF_03045","interpro_description":"DIS3-like exonuclease 2","interpro_id":"IPR028591","interpro_name":"DIS3L2","locations":[{"end":844,"start":43}],"match_end":844,"match_start":43,"name":"DIS3L2"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":206,"start":180}],"match_end":206,"match_start":180,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":190,"start":180}],"match_end":190,"match_start":180,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3580367,"start_pos":3577788,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":130,"start":119}},{"range":{"end":191,"start":179}}],"name":"dis32","ortholog_annotations":[{"gene_uniquename":"SJAG_03876","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:28648","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03876","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2C4.07c","reference_uniquename":"PMID:21511999"}],"product":"cytoplasmic P body 3'-5'-exoribonuclease Dis3L2","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0008266"],"not-binding":["GO:0000175"]}},"subset_termids":["GO:0016788","GO:0140098","GO:0000932","GO:0005829","GO:0016071","GO:0004527"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000175":null,"GO:0000932":null,"GO:0000956":null,"GO:0005829":null,"GO:0008266":null,"GO:1990074":null,"MONDO:0009965":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03876.1"],"transcripts_by_uniquename":{"SJAG_03876.1":null},"uniprot_identifier":"B6K5A6","uniquename":"SJAG_03876"}


id: SJAG_03877
data:
  {"active_sites":[{"assigned_by":"UniProtKB","range":{"end":350,"start":350}}],"binding_sites":[{"assigned_by":"UniProtKB","ligand":"S-adenosyl-L-methionine","range":{"end":229,"start":223}},{"assigned_by":"UniProtKB","ligand":"S-adenosyl-L-methionine","range":{"end":246,"start":246}},{"assigned_by":"UniProtKB","ligand":"S-adenosyl-L-methionine","range":{"end":273,"start":273}},{"assigned_by":"UniProtKB","ligand":"S-adenosyl-L-methionine","range":{"end":293,"start":293}}],"cv_annotations":{"biological_process":[{"annotations":[80142],"is_not":false,"summary":null,"term":"GO:0070475"}],"cellular_component":[{"annotations":[80141],"is_not":false,"summary":null,"term":"GO:0005730"}],"molecular_function":[{"annotations":[68723],"is_not":false,"summary":null,"term":"GO:0003723"},{"annotations":[97570],"is_not":false,"summary":null,"term":"GO:0009383"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB08711","EnsemblGenomes-Gn:SJAG_03877","InterPro:IPR001678","InterPro:IPR023267","UniProtKB/TrEMBL:B6K5A7","InterPro:IPR029063","GOA:B6K5A7"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":465,"start":428}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"nmd3","uniquename":"SJAG_03882"},{"name":"mta1","uniquename":"SJAG_03881"},{"uniquename":"SJAG_03880"},{"name":"prz1","uniquename":"SJAG_03879"},{"name":"smp3","uniquename":"SJAG_03878"},{"name":"rcm1","uniquename":"SJAG_03877"},{"name":"dis32","uniquename":"SJAG_03876"},{"uniquename":"SJAG_03875"},{"uniquename":"SJAG_03874"},{"uniquename":"SJAG_03873"},{"name":"csc4","uniquename":"SJAG_06270"}],"genes_by_uniquename":{"HGNC:16385":null,"SJAG_03877":null,"SPAC2C4.06c":null,"YNL022C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"NOL1/NOP2/Sun domain family member 5, N-terminal domain","id":"PF21153","interpro_description":"NSUN5/RCM1, N-terminal domain","interpro_id":"IPR048889","interpro_name":"NSUN5_RCM1_N","locations":[{"end":122,"start":34}],"match_end":122,"match_start":34,"name":"NSUN5_N"},{"dbname":"PFAM","description":"NOL1/NOP2/Sun domain family member 5, ferredoxin-like domain","id":"PF21148","interpro_description":"NOL1/NOP2/NSUN 5/7, ferredoxin-like domain","interpro_id":"IPR049561","interpro_name":"NSUN5_7_fdxn-like","locations":[{"end":198,"start":130}],"match_end":198,"match_start":130,"name":"NSUN5_fdxn-like"},{"dbname":"PFAM","description":"16S rRNA methyltransferase RsmB/F","id":"PF01189","interpro_description":"SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic core","interpro_id":"IPR049560","interpro_name":"MeTrfase_RsmB-F_NOP2_cat","locations":[{"end":419,"start":218}],"match_end":419,"match_start":218,"name":"Methyltr_RsmB-F"},{"dbname":"CDD","description":"AdoMet_MTases","id":"cd02440","locations":[{"end":299,"start":218}],"match_end":299,"match_start":218,"name":"AdoMet_MTases"},{"dbname":"PROSITE_PROFILES","description":"SAM-dependent MTase RsmB/NOP-type domain profile.","id":"PS51686","interpro_description":"SAM-dependent methyltransferase RsmB-F/NOP2-type domain","interpro_id":"IPR001678","interpro_name":"MeTrfase_RsmB-F_NOP2_dom","locations":[{"end":422,"start":122}],"match_end":422,"match_start":122,"name":"SAM_MT_RSMB_NOP"},{"dbname":"PRINTS","description":"RNA (C5-cytosine) methyltransferase signature","id":"PR02008","interpro_description":"RNA (C5-cytosine) methyltransferase","interpro_id":"IPR023267","interpro_name":"RCMT","locations":[{"end":203,"start":189},{"end":230,"start":220},{"end":300,"start":288},{"end":358,"start":342},{"end":421,"start":404}],"match_end":421,"match_start":189,"name":"RCMTFAMILY"},{"dbname":"FUNFAM","description":"Methyltransferase NSUN5, putative","id":"G3DSA:3.40.50.150:FF:000164","locations":[{"end":427,"start":198}],"match_end":427,"match_start":198},{"dbname":"SUPERFAMILY","id":"SSF53335","interpro_description":"S-adenosyl-L-methionine-dependent methyltransferase superfamily","interpro_id":"IPR029063","interpro_name":"SAM-dependent_MTases_sf","locations":[{"end":419,"start":130}],"match_end":419,"match_start":130,"name":"S-adenosyl-L-methionine-dependent methyltransferases"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.150","interpro_description":"S-adenosyl-L-methionine-dependent methyltransferase superfamily","interpro_id":"IPR029063","interpro_name":"SAM-dependent_MTases_sf","locations":[{"end":428,"start":198}],"match_end":428,"match_start":198,"name":"Vaccinia Virus protein VP39"},{"dbname":"GENE3D","id":"G3DSA:3.30.70.1170","locations":[{"end":197,"start":123}],"match_end":197,"match_start":123,"name":"Sun protein; domain 3"},{"dbname":"PANTHER","id":"PTHR22807","interpro_description":"RNA (C5-cytosine) methyltransferase","interpro_id":"IPR023267","interpro_name":"RCMT","locations":[{"end":419,"start":20}],"match_end":419,"match_start":20,"name":"NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN  DOMAIN-CONTAINING"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":465,"start":428}],"match_end":465,"match_start":428,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":438,"start":428}],"match_end":438,"match_start":428,"name":"disorder_prediction"},{"dbname":"MOBIDB-Positive-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Positive-Polyelectrolyte","locations":[{"end":458,"start":441}],"match_end":458,"match_start":441,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3577593,"start_pos":3576087,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":65,"start":57}},{"range":{"end":461,"start":438}}],"name":"rcm1","ortholog_annotations":[{"gene_uniquename":"SJAG_03877","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:16385","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03877","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2C4.06c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03877","ortholog_taxonid":4932,"ortholog_uniquename":"YNL022C","reference_uniquename":"PMID:29761456"}],"product":"rRNA (cytosine-5-)-methyltransferase Rcm1","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003723"],"not-binding":["GO:0009383"]}},"subset_termids":["GO:0140098","GO:0042254","GO:0016741","GO:0005634","GO:0005730"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0003723":null,"GO:0005730":null,"GO:0009383":null,"GO:0070475":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03877.1"],"transcripts_by_uniquename":{"SJAG_03877.1":null},"uniprot_identifier":"B6K5A7","uniquename":"SJAG_03877"}


id: SJAG_03878
data:
  {"cv_annotations":{"biological_process":[{"annotations":[76856],"is_not":false,"summary":null,"term":"GO:0006506"}],"cellular_component":[{"annotations":[76855],"is_not":false,"summary":null,"term":"GO:0005789"}],"molecular_function":[{"annotations":[100050],"is_not":false,"summary":null,"term":"GO:0120565"}]},"dbxrefs":["GOA:B6K5A8","EnsemblGenomes-Gn:SJAG_03878","InterPro:IPR005599","UniProtKB/TrEMBL:B6K5A8","EnsemblGenomes-Tr:EEB08712"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"mot2","uniquename":"SJAG_03883"},{"name":"nmd3","uniquename":"SJAG_03882"},{"name":"mta1","uniquename":"SJAG_03881"},{"uniquename":"SJAG_03880"},{"name":"prz1","uniquename":"SJAG_03879"},{"name":"smp3","uniquename":"SJAG_03878"},{"name":"rcm1","uniquename":"SJAG_03877"},{"name":"dis32","uniquename":"SJAG_03876"},{"uniquename":"SJAG_03875"},{"uniquename":"SJAG_03874"},{"uniquename":"SJAG_03873"}],"genes_by_uniquename":{"HGNC:30596":null,"SJAG_03878":null,"SPAC4G8.12c":null,"YOR149C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Alg9-like mannosyltransferase family","id":"PF03901","interpro_description":"GPI mannosyltransferase","interpro_id":"IPR005599","interpro_name":"GPI_mannosylTrfase","locations":[{"end":400,"start":8}],"match_end":400,"match_start":8,"name":"Glyco_transf_22"},{"dbname":"PANTHER","id":"PTHR22760","interpro_description":"GPI mannosyltransferase","interpro_id":"IPR005599","interpro_name":"GPI_mannosylTrfase","locations":[{"end":435,"start":10}],"match_end":435,"match_start":10,"name":"GLYCOSYLTRANSFERASE"}],"location":{"chromosome_name":"supercont5.2","end_pos":3575994,"start_pos":3574204,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":39,"start":30}},{"range":{"end":201,"start":189}}],"name":"smp3","ortholog_annotations":[{"gene_uniquename":"SJAG_03878","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:30596","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03878","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC4G8.12c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03878","ortholog_taxonid":4932,"ortholog_uniquename":"YOR149C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03878","ortholog_taxonid":4932,"ortholog_uniquename":"YOR149C","reference_uniquename":"PMID:26896847"}],"product":"pig-Z, dol-P-Man:Man(3)GlcN-acyl-PI alpha-1,2-mannosyltransferase, Smp3","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0120565"]}},"subset_termids":["GO:0005783","GO:0005789","GO:0006629","GO:0051604","GO:0016757"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005789":null,"GO:0006506":null,"GO:0120565":null},"tm_domain_coords":[{"assigned_by":"TMHMM","range":{"end":26,"start":7}},{"assigned_by":"TMHMM","range":{"end":83,"start":61}},{"assigned_by":"TMHMM","range":{"end":112,"start":90}},{"assigned_by":"TMHMM","range":{"end":154,"start":132}},{"assigned_by":"TMHMM","range":{"end":235,"start":213}},{"assigned_by":"TMHMM","range":{"end":312,"start":295}},{"assigned_by":"TMHMM","range":{"end":346,"start":324}}],"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03878.1"],"transcripts_by_uniquename":{"SJAG_03878.1":null},"uniprot_identifier":"B6K5A8","uniquename":"SJAG_03878"}


id: SJAG_03879
data:
  {"cv_annotations":{"biological_process":[{"annotations":[100054],"is_not":false,"summary":null,"term":"GO:0097720"},{"annotations":[100056],"is_not":false,"summary":null,"term":"GO:0071277"},{"annotations":[100057],"is_not":false,"summary":null,"term":"GO:0006874"},{"annotations":[64307],"is_not":false,"summary":null,"term":"GO:0045944"}],"cellular_component":[{"annotations":[100052],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[76929],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[76931],"is_not":false,"summary":null,"term":"GO:0001228"},{"annotations":[76932],"is_not":false,"summary":null,"term":"GO:0000978"},{"annotations":[64306],"is_not":false,"summary":null,"term":"GO:0008270"}]},"dbxrefs":["InterPro:IPR013087","EnsemblGenomes-Tr:EEB08713","InterPro:IPR036236","GOA:B6K5A9","EnsemblGenomes-Gn:SJAG_03879","UniProtKB/TrEMBL:B6K5A9"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":221,"start":202}},{"range":{"end":437,"start":414}},{"range":{"end":602,"start":568}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"cph1","uniquename":"SJAG_03884"},{"name":"mot2","uniquename":"SJAG_03883"},{"name":"nmd3","uniquename":"SJAG_03882"},{"name":"mta1","uniquename":"SJAG_03881"},{"uniquename":"SJAG_03880"},{"name":"prz1","uniquename":"SJAG_03879"},{"name":"smp3","uniquename":"SJAG_03878"},{"name":"rcm1","uniquename":"SJAG_03877"},{"name":"dis32","uniquename":"SJAG_03876"},{"uniquename":"SJAG_03875"},{"uniquename":"SJAG_03874"}],"genes_by_uniquename":{"SJAG_03879":null,"SPAC4G8.13c":null,"YNL027W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Zinc finger, C2H2 type","id":"PF00096","interpro_description":"Zinc finger C2H2-type","interpro_id":"IPR013087","interpro_name":"Znf_C2H2_type","locations":[{"end":632,"start":608},{"end":660,"start":638}],"match_end":660,"match_start":608,"name":"zf-C2H2"},{"dbname":"PROSITE_PATTERNS","description":"Zinc finger C2H2 type domain signature.","id":"PS00028","interpro_description":"Zinc finger C2H2-type","interpro_id":"IPR013087","interpro_name":"Znf_C2H2_type","locations":[{"end":632,"start":610},{"end":660,"start":640}],"match_end":660,"match_start":610,"name":"ZINC_FINGER_C2H2_1"},{"dbname":"PROSITE_PROFILES","description":"Zinc finger C2H2 type domain profile.","id":"PS50157","interpro_description":"Zinc finger C2H2-type","interpro_id":"IPR013087","interpro_name":"Znf_C2H2_type","locations":[{"end":693,"start":608}],"match_end":693,"match_start":608,"name":"ZINC_FINGER_C2H2_2"},{"dbname":"SMART","id":"SM00355","interpro_description":"Zinc finger C2H2-type","interpro_id":"IPR013087","interpro_name":"Znf_C2H2_type","locations":[{"end":632,"start":608},{"end":660,"start":638},{"end":686,"start":666}],"match_end":686,"match_start":608,"name":"c2h2final6"},{"dbname":"FUNFAM","description":"C2H2 type zinc finger protein","id":"G3DSA:3.30.160.60:FF:000181","locations":[{"end":663,"start":635}],"match_end":663,"match_start":635},{"dbname":"FUNFAM","description":"Putative zinc finger protein 143","id":"G3DSA:3.30.160.60:FF:000125","locations":[{"end":634,"start":607}],"match_end":634,"match_start":607},{"dbname":"SUPERFAMILY","id":"SSF57667","interpro_description":"Zinc finger C2H2 superfamily","interpro_id":"IPR036236","interpro_name":"Znf_C2H2_sf","locations":[{"end":684,"start":608}],"match_end":684,"match_start":608,"name":"beta-beta-alpha zinc fingers"},{"dbname":"GENE3D","id":"G3DSA:3.30.160.60","locations":[{"end":694,"start":607}],"match_end":694,"match_start":607,"name":"Classic Zinc Finger"},{"dbname":"PANTHER","id":"PTHR23235","locations":[{"end":692,"start":344}],"match_end":692,"match_start":344,"name":"KRUEPPEL-LIKE TRANSCRIPTION FACTOR"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":221,"start":202},{"end":437,"start":414},{"end":602,"start":568}],"match_end":602,"match_start":202,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":588,"start":568}],"match_end":588,"match_start":568,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3573583,"start_pos":3571430,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":198,"start":182}},{"range":{"end":283,"start":270}},{"range":{"end":396,"start":384}},{"range":{"end":716,"start":706}}],"name":"prz1","ortholog_annotations":[{"gene_uniquename":"SJAG_03879","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC4G8.13c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03879","ortholog_taxonid":4932,"ortholog_uniquename":"YNL027W","reference_uniquename":"PMID:29761456"}],"product":"DNA-binding transcription factor, calcineurin responsive Prz1","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0008270","GO:0000978"],"not-binding":["GO:0001228"]}},"subset_termids":["GO:0098771","GO:0005634","GO:0005829","GO:0006355","GO:0023052","GO:0006351","GO:0003700"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000978":null,"GO:0001228":null,"GO:0005634":null,"GO:0005829":null,"GO:0006874":null,"GO:0008270":null,"GO:0045944":null,"GO:0071277":null,"GO:0097720":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03879.1"],"transcripts_by_uniquename":{"SJAG_03879.1":null},"uniprot_identifier":"B6K5A9","uniquename":"SJAG_03879"}


id: SJAG_03880
data:
  {"cv_annotations":{"molecular_function":[{"annotations":[91721],"is_not":false,"summary":null,"term":"GO:0016773"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_03880","EnsemblGenomes-Tr:EEB08714","GOA:B6K5B0","UniProtKB/TrEMBL:B6K5B0","InterPro:IPR011611","InterPro:IPR029056"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_03885"},{"name":"cph1","uniquename":"SJAG_03884"},{"name":"mot2","uniquename":"SJAG_03883"},{"name":"nmd3","uniquename":"SJAG_03882"},{"name":"mta1","uniquename":"SJAG_03881"},{"uniquename":"SJAG_03880"},{"name":"prz1","uniquename":"SJAG_03879"},{"name":"smp3","uniquename":"SJAG_03878"},{"name":"rcm1","uniquename":"SJAG_03877"},{"name":"dis32","uniquename":"SJAG_03876"},{"uniquename":"SJAG_03875"}],"genes_by_uniquename":{"SJAG_03880":null,"SPAC16C9.01c":null,"YCR019W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"pfkB family carbohydrate kinase","id":"PF00294","interpro_description":"Carbohydrate kinase PfkB","interpro_id":"IPR011611","interpro_name":"PfkB_dom","locations":[{"end":315,"start":60}],"match_end":315,"match_start":60,"name":"PfkB"},{"dbname":"SUPERFAMILY","id":"SSF53613","interpro_description":"Ribokinase-like","interpro_id":"IPR029056","interpro_name":"Ribokinase-like","locations":[{"end":315,"start":16}],"match_end":315,"match_start":16,"name":"Ribokinase-like"},{"dbname":"GENE3D","id":"G3DSA:3.40.1190.20","interpro_description":"Ribokinase-like","interpro_id":"IPR029056","interpro_name":"Ribokinase-like","locations":[{"end":330,"start":10}],"match_end":330,"match_start":10},{"dbname":"PANTHER","id":"PTHR47098","locations":[{"end":360,"start":7}],"match_end":360,"match_start":7,"name":"PROTEIN MAK32"}],"location":{"chromosome_name":"supercont5.2","end_pos":3569989,"start_pos":3568737,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":339,"start":323}}],"ortholog_annotations":[{"gene_uniquename":"SJAG_03880","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC16C9.01c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03880","ortholog_taxonid":4932,"ortholog_uniquename":"YCR019W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03880","ortholog_taxonid":4932,"ortholog_uniquename":"YCR019W","reference_uniquename":"PMID:26896847"}],"product":"PfkB carbohydrate-kinase superfamily, unknown specificity, probable alcohol group as an acceptor","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0016773"]}},"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0016773":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03880.1"],"transcripts_by_uniquename":{"SJAG_03880.1":null},"uniprot_identifier":"B6K5B0","uniquename":"SJAG_03880"}


id: SJAG_03881
data:
  {"binding_sites":[{"assigned_by":"UniProtKB","ligand":"phosphate","range":{"end":13,"start":13}},{"assigned_by":"UniProtKB","ligand":"phosphate","range":{"end":57,"start":56}},{"assigned_by":"UniProtKB","ligand":"phosphate","range":{"end":90,"start":89}},{"assigned_by":"UniProtKB","ligand":"substrate","range":{"end":195,"start":195}},{"assigned_by":"UniProtKB","ligand":"phosphate","range":{"end":196,"start":196}},{"assigned_by":"UniProtKB","ligand":"substrate","range":{"end":221,"start":219}}],"cv_annotations":{"biological_process":[{"annotations":[79694],"is_not":false,"summary":null,"term":"GO:0019509"},{"annotations":[68053],"is_not":false,"summary":null,"term":"GO:0006166"}],"cellular_component":[{"annotations":[79692],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[68055],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[79693],"is_not":false,"summary":null,"term":"GO:0017061"}],"mondo":[{"annotations":[88716],"is_not":false,"summary":null,"term":"MONDO:0007205"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_03881","GOA:B6K5B1","EnsemblGenomes-Tr:EEB08715","InterPro:IPR000845","InterPro:IPR018099","InterPro:IPR035994","UniProtKB/TrEMBL:B6K5B1","InterPro:IPR010044"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"upf1","uniquename":"SJAG_03886"},{"uniquename":"SJAG_03885"},{"name":"cph1","uniquename":"SJAG_03884"},{"name":"mot2","uniquename":"SJAG_03883"},{"name":"nmd3","uniquename":"SJAG_03882"},{"name":"mta1","uniquename":"SJAG_03881"},{"uniquename":"SJAG_03880"},{"name":"prz1","uniquename":"SJAG_03879"},{"name":"smp3","uniquename":"SJAG_03878"},{"name":"rcm1","uniquename":"SJAG_03877"},{"name":"dis32","uniquename":"SJAG_03876"}],"genes_by_uniquename":{"HGNC:7413":null,"SJAG_03881":null,"SPAC16C9.02c":null,"YLR017W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Phosphorylase superfamily","id":"PF01048","interpro_description":"Nucleoside phosphorylase domain","interpro_id":"IPR000845","interpro_name":"Nucleoside_phosphorylase_d","locations":[{"end":255,"start":7}],"match_end":255,"match_start":7,"name":"PNP_UDP_1"},{"dbname":"CDD","description":"MTAP_SsMTAPII_like_MTIP","id":"cd09010","interpro_description":"Methylthioadenosine phosphorylase (MTAP)","interpro_id":"IPR010044","interpro_name":"MTAP","locations":[{"end":254,"start":7}],"match_end":254,"match_start":7,"name":"MTAP_SsMTAPII_like_MTIP"},{"dbname":"PROSITE_PATTERNS","description":"Purine and other phosphorylases family 2 signature.","id":"PS01240","interpro_description":"Purine phosphorylase, family 2, conserved site","interpro_id":"IPR018099","interpro_name":"Purine_phosphorylase-2_CS","locations":[{"end":94,"start":54}],"match_end":94,"match_start":54,"name":"PNP_MTAP_2"},{"dbname":"FUNFAM","description":"S-methyl-5'-thioadenosine phosphorylase","id":"G3DSA:3.40.50.1580:FF:000008","locations":[{"end":298,"start":1}],"match_end":298,"match_start":1},{"dbname":"SUPERFAMILY","id":"SSF53167","interpro_description":"Nucleoside phosphorylase superfamily","interpro_id":"IPR035994","interpro_name":"Nucleoside_phosphorylase_sf","locations":[{"end":261,"start":7}],"match_end":261,"match_start":7,"name":"Purine and uridine phosphorylases"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.1580","interpro_description":"Nucleoside phosphorylase superfamily","interpro_id":"IPR035994","interpro_name":"Nucleoside_phosphorylase_sf","locations":[{"end":298,"start":1}],"match_end":298,"match_start":1,"name":"Nucleoside phosphorylase domain"},{"dbname":"PANTHER","id":"PTHR42679","interpro_description":"Methylthioadenosine phosphorylase (MTAP)","interpro_id":"IPR010044","interpro_name":"MTAP","locations":[{"end":260,"start":3}],"match_end":260,"match_start":3,"name":"S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE"},{"dbname":"HAMAP","description":"S-methyl-5'-thioadenosine phosphorylase [mtnP].","id":"MF_01963","interpro_description":"Methylthioadenosine phosphorylase (MTAP)","interpro_id":"IPR010044","interpro_name":"MTAP","locations":[{"end":275,"start":5}],"match_end":275,"match_start":5,"name":"MTAP"},{"dbname":"NCBIFAM","description":"S-methyl-5'-thioadenosine phosphorylase","id":"TIGR01694","interpro_description":"Methylthioadenosine phosphorylase (MTAP)","interpro_id":"IPR010044","interpro_name":"MTAP","locations":[{"end":255,"start":7}],"match_end":255,"match_start":7,"name":"MTAP"}],"location":{"chromosome_name":"supercont5.2","end_pos":3568469,"start_pos":3567080,"strand":"forward"},"name":"mta1","ortholog_annotations":[{"gene_uniquename":"SJAG_03881","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:7413","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03881","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC16C9.02c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03881","ortholog_taxonid":4932,"ortholog_uniquename":"YLR017W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03881","ortholog_taxonid":4932,"ortholog_uniquename":"YLR017W","reference_uniquename":"PMID:26896847"}],"product":"S-methyl-5-thioadenosine phosphorylase Mta1","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000104":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0017061"]}},"subset_termids":["GO:0016757","GO:0055086","GO:0005634","MONDO:0005066","GO:0006790","GO:0006520","GO:0005829"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005634":null,"GO:0005829":null,"GO:0006166":null,"GO:0017061":null,"GO:0019509":null,"MONDO:0007205":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03881.1"],"transcripts_by_uniquename":{"SJAG_03881.1":null},"uniprot_identifier":"B6K5B1","uniquename":"SJAG_03881"}


id: SJAG_03882
data:
  {"coiled_coil_coords":[{"range":{"end":430,"start":410}}],"cv_annotations":{"biological_process":[{"annotations":[78529],"is_not":false,"summary":null,"term":"GO:0000055"}],"cellular_component":[{"annotations":[91727],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[78527],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[91730],"is_not":false,"summary":null,"term":"GO:0030674"},{"annotations":[78526],"is_not":false,"summary":null,"term":"GO:0043023"}]},"dbxrefs":["UniProtKB/TrEMBL:B6K5B2","EnsemblGenomes-Tr:EEB08716","GOA:B6K5B2","InterPro:IPR007064","InterPro:IPR039768","EnsemblGenomes-Gn:SJAG_03882"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":464,"start":443}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"pom2","uniquename":"SJAG_03887"},{"name":"upf1","uniquename":"SJAG_03886"},{"uniquename":"SJAG_03885"},{"name":"cph1","uniquename":"SJAG_03884"},{"name":"mot2","uniquename":"SJAG_03883"},{"name":"nmd3","uniquename":"SJAG_03882"},{"name":"mta1","uniquename":"SJAG_03881"},{"uniquename":"SJAG_03880"},{"name":"prz1","uniquename":"SJAG_03879"},{"name":"smp3","uniquename":"SJAG_03878"},{"name":"rcm1","uniquename":"SJAG_03877"}],"genes_by_uniquename":{"HGNC:24250":null,"SJAG_03882":null,"SPAC16C9.03":null,"YHR170W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"NMD3 OB-fold domain","id":"PF21192","interpro_description":"60S ribosomal export protein NMD3, OB-fold domain","interpro_id":"IPR048898","interpro_name":"NMD3_OB","locations":[{"end":381,"start":300}],"match_end":381,"match_start":300,"name":"NMD3_OB"},{"dbname":"PFAM","description":"NMD3 SH3 domain","id":"PF21193","interpro_description":"60S ribosomal export protein NMD3, SH3 domain","interpro_id":"IPR048899","interpro_name":"NMD_SH3","locations":[{"end":283,"start":236}],"match_end":283,"match_start":236,"name":"NMD_SH3"},{"dbname":"PFAM","description":"NMD3 family","id":"PF04981","interpro_description":"Nmd3, N-terminal","interpro_id":"IPR007064","interpro_name":"Nmd3_N","locations":[{"end":209,"start":25}],"match_end":209,"match_start":25,"name":"NMD3"},{"dbname":"PANTHER","id":"PTHR12746","interpro_description":"Ribosomal export protein Nmd3","interpro_id":"IPR039768","interpro_name":"Nmd3","locations":[{"end":479,"start":15}],"match_end":479,"match_start":15,"name":"NONSENSE-MEDIATED MRNA DECAY PROTEIN 3"},{"dbname":"COILS","id":"Coil","locations":[{"end":430,"start":410}],"match_end":430,"match_start":410,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":464,"start":443}],"match_end":464,"match_start":443,"name":"disorder_prediction"},{"dbname":"MOBIDB-Negative-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Negative-Polyelectrolyte","locations":[{"end":464,"start":451}],"match_end":464,"match_start":451,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3566334,"start_pos":3564818,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":463,"start":449}}],"name":"nmd3","ortholog_annotations":[{"gene_uniquename":"SJAG_03882","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:24250","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03882","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC16C9.03","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03882","ortholog_taxonid":4932,"ortholog_uniquename":"YHR170W","reference_uniquename":"PMID:29761456"}],"product":"ribosome export adaptor Nmd3","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0043023"],"not-binding":["GO:0030674"]}},"subset_termids":["GO:0005829","GO:0006913","GO:0005634","GO:0042254","GO:0060090"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000055":null,"GO:0005634":null,"GO:0005829":null,"GO:0030674":null,"GO:0043023":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03882.1"],"transcripts_by_uniquename":{"SJAG_03882.1":null},"uniprot_identifier":"B6K5B2","uniquename":"SJAG_03882"}


id: SJAG_03883
data:
  {"coiled_coil_coords":[{"range":{"end":105,"start":76}}],"cv_annotations":{"biological_process":[{"annotations":[91735],"is_not":false,"summary":null,"term":"GO:0120271"},{"annotations":[91736],"is_not":false,"summary":null,"term":"GO:0000289"},{"annotations":[91737],"is_not":false,"summary":null,"term":"GO:0031047"}],"cellular_component":[{"annotations":[57326],"is_not":false,"summary":null,"term":"GO:0030015"},{"annotations":[91734],"is_not":false,"summary":null,"term":"GO:0005829"}],"molecular_function":[{"annotations":[57321],"is_not":false,"summary":null,"term":"GO:0003723"},{"annotations":[57328],"is_not":false,"summary":null,"term":"GO:0061630"},{"annotations":[57322],"is_not":false,"summary":null,"term":"GO:0008270"}]},"dbxrefs":["InterPro:IPR013083","InterPro:IPR039515","UniProtKB/TrEMBL:B6K5B3","InterPro:IPR035979","InterPro:IPR003954","InterPro:IPR012677","InterPro:IPR000504","EnsemblGenomes-Tr:EEB08717","EnsemblGenomes-Gn:SJAG_03883","GOA:B6K5B3","InterPro:IPR039780","InterPro:IPR000571","InterPro:IPR001841"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":440,"start":412}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"urb2","uniquename":"SJAG_03888"},{"name":"pom2","uniquename":"SJAG_03887"},{"name":"upf1","uniquename":"SJAG_03886"},{"uniquename":"SJAG_03885"},{"name":"cph1","uniquename":"SJAG_03884"},{"name":"mot2","uniquename":"SJAG_03883"},{"name":"nmd3","uniquename":"SJAG_03882"},{"name":"mta1","uniquename":"SJAG_03881"},{"uniquename":"SJAG_03880"},{"name":"prz1","uniquename":"SJAG_03879"},{"name":"smp3","uniquename":"SJAG_03878"}],"genes_by_uniquename":{"HGNC:7880":null,"SJAG_03883":null,"SPAC16C9.04c":null,"YER068W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"RING/Ubox like zinc-binding domain","id":"PF14570","locations":[{"end":64,"start":18}],"match_end":64,"match_start":18,"name":"zf-RING_4"},{"dbname":"PFAM","description":"RNA recognition motif","id":"PF00076","interpro_description":"RNA recognition motif domain","interpro_id":"IPR000504","interpro_name":"RRM_dom","locations":[{"end":195,"start":140}],"match_end":195,"match_start":140,"name":"RRM_1"},{"dbname":"CDD","description":"mRING-HC-C4C4_CNOT4","id":"cd16618","interpro_description":"NOT4, modified RING finger, HC subclass (C4C4-type)","interpro_id":"IPR039515","interpro_name":"NOT4_mRING-HC-C4C4","locations":[{"end":62,"start":16}],"match_end":62,"match_start":16,"name":"mRING-HC-C4C4_CNOT4"},{"dbname":"PROSITE_PROFILES","description":"Zinc finger C3H1-type profile.","id":"PS50103","interpro_description":"Zinc finger, CCCH-type","interpro_id":"IPR000571","interpro_name":"Znf_CCCH","locations":[{"end":226,"start":199}],"match_end":226,"match_start":199,"name":"ZF_C3H1"},{"dbname":"PROSITE_PROFILES","description":"Zinc finger RING-type profile.","id":"PS50089","interpro_description":"Zinc finger, RING-type","interpro_id":"IPR001841","interpro_name":"Znf_RING","locations":[{"end":61,"start":18}],"match_end":61,"match_start":18,"name":"ZF_RING_2"},{"dbname":"PROSITE_PROFILES","description":"Eukaryotic RNA Recognition Motif (RRM) profile.","id":"PS50102","interpro_description":"RNA recognition motif domain","interpro_id":"IPR000504","interpro_name":"RRM_dom","locations":[{"end":202,"start":116}],"match_end":202,"match_start":116,"name":"RRM"},{"dbname":"SMART","id":"SM00361","interpro_description":"RNA recognition motif domain, eukaryotic-type","interpro_id":"IPR003954","interpro_name":"RRM_euk-type","locations":[{"end":198,"start":117}],"match_end":198,"match_start":117,"name":"rrm2_1"},{"dbname":"FUNFAM","description":"CCR4-NOT transcription complex subunit 4","id":"G3DSA:3.30.40.10:FF:000006","locations":[{"end":82,"start":6}],"match_end":82,"match_start":6},{"dbname":"FUNFAM","description":"CCR4-NOT core complex subunit Not4","id":"G3DSA:3.30.70.330:FF:000257","locations":[{"end":199,"start":117}],"match_end":199,"match_start":117},{"dbname":"SUPERFAMILY","id":"SSF57850","locations":[{"end":79,"start":12}],"match_end":79,"match_start":12,"name":"RING/U-box"},{"dbname":"SUPERFAMILY","id":"SSF54928","interpro_description":"RNA-binding domain superfamily","interpro_id":"IPR035979","interpro_name":"RBD_domain_sf","locations":[{"end":216,"start":117}],"match_end":216,"match_start":117,"name":"RNA-binding domain, RBD"},{"dbname":"GENE3D","id":"G3DSA:3.30.40.10","interpro_description":"Zinc finger, RING/FYVE/PHD-type","interpro_id":"IPR013083","interpro_name":"Znf_RING/FYVE/PHD","locations":[{"end":81,"start":7}],"match_end":81,"match_start":7,"name":"Zinc/RING finger domain, C3HC4 (zinc finger)"},{"dbname":"GENE3D","id":"G3DSA:3.30.70.330","interpro_description":"Nucleotide-binding alpha-beta plait domain superfamily","interpro_id":"IPR012677","interpro_name":"Nucleotide-bd_a/b_plait_sf","locations":[{"end":199,"start":117}],"match_end":199,"match_start":117},{"dbname":"PANTHER","id":"PTHR12603","interpro_description":"CCR4-NOT transcription complex subunit 4","interpro_id":"IPR039780","interpro_name":"Mot2","locations":[{"end":435,"start":12}],"match_end":435,"match_start":12,"name":"CCR4-NOT TRANSCRIPTION COMPLEX RELATED"},{"dbname":"COILS","id":"Coil","locations":[{"end":105,"start":76}],"match_end":105,"match_start":76,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":440,"start":412}],"match_end":440,"match_start":412,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":421,"start":412}],"match_end":421,"match_start":412,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3564362,"start_pos":3562782,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":104,"start":84}},{"range":{"end":159,"start":146}},{"range":{"end":306,"start":295}},{"range":{"end":420,"start":405}},{"range":{"end":454,"start":432}}],"name":"mot2","ortholog_annotations":[{"gene_uniquename":"SJAG_03883","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:7880","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03883","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC16C9.04c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03883","ortholog_taxonid":4932,"ortholog_uniquename":"YER068W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03883","ortholog_taxonid":4932,"ortholog_uniquename":"YER068W","reference_uniquename":"PMID:26896847"}],"product":"CCR4-Not complex ubiquitin-protein ligase E3 subunit 4","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000043":null,"GO_REF:0000107":null,"GO_REF:0000117":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003723","GO:0008270"],"not-binding":["GO:0061630"]}},"subset_termids":["GO:0140096","GO:0005829","GO:0019787","GO:0016746","GO:0016071"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000289":null,"GO:0003723":null,"GO:0005829":null,"GO:0008270":null,"GO:0030015":null,"GO:0031047":null,"GO:0061630":null,"GO:0120271":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03883.1"],"transcripts_by_uniquename":{"SJAG_03883.1":null},"uniprot_identifier":"B6K5B3","uniquename":"SJAG_03883"}


id: SJAG_03884
data:
  {"cv_annotations":{"biological_process":[{"annotations":[74607],"is_not":false,"summary":null,"term":"GO:0006357"},{"annotations":[91745],"is_not":false,"summary":null,"term":"GO:0045815"}],"cellular_component":[{"annotations":[91741],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[74606],"is_not":false,"summary":null,"term":"GO:0032221"}],"molecular_function":[{"annotations":[61045],"is_not":false,"summary":null,"term":"GO:0008270"}]},"dbxrefs":["GOA:B6K5B4","InterPro:IPR013083","InterPro:IPR019787","EnsemblGenomes-Gn:SJAG_03884","EnsemblGenomes-Tr:EEB08718","InterPro:IPR011011","InterPro:IPR019786","UniProtKB/TrEMBL:B6K5B4","InterPro:IPR001965"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":58,"start":1}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"vps45","uniquename":"SJAG_03889"},{"name":"urb2","uniquename":"SJAG_03888"},{"name":"pom2","uniquename":"SJAG_03887"},{"name":"upf1","uniquename":"SJAG_03886"},{"uniquename":"SJAG_03885"},{"name":"cph1","uniquename":"SJAG_03884"},{"name":"mot2","uniquename":"SJAG_03883"},{"name":"nmd3","uniquename":"SJAG_03882"},{"name":"mta1","uniquename":"SJAG_03881"},{"uniquename":"SJAG_03880"},{"name":"prz1","uniquename":"SJAG_03879"}],"genes_by_uniquename":{"HGNC:20816":null,"SJAG_03884":null,"SPAC16C9.05":null,"YMR075W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"PHD-finger","id":"PF00628","interpro_description":"Zinc finger, PHD-finger","interpro_id":"IPR019787","interpro_name":"Znf_PHD-finger","locations":[{"end":110,"start":67}],"match_end":110,"match_start":67,"name":"PHD"},{"dbname":"CDD","description":"PHD1_Rco1","id":"cd15535","locations":[{"end":110,"start":66}],"match_end":110,"match_start":66,"name":"PHD1_Rco1"},{"dbname":"PROSITE_PATTERNS","description":"Zinc finger PHD-type signature.","id":"PS01359","interpro_description":"Zinc finger, PHD-type, conserved site","interpro_id":"IPR019786","interpro_name":"Zinc_finger_PHD-type_CS","locations":[{"end":110,"start":67}],"match_end":110,"match_start":67,"name":"ZF_PHD_1"},{"dbname":"PROSITE_PROFILES","description":"Zinc finger PHD-type profile.","id":"PS50016","interpro_description":"Zinc finger, PHD-finger","interpro_id":"IPR019787","interpro_name":"Znf_PHD-finger","locations":[{"end":113,"start":64}],"match_end":113,"match_start":64,"name":"ZF_PHD_2"},{"dbname":"SMART","id":"SM00249","interpro_description":"Zinc finger, PHD-type","interpro_id":"IPR001965","interpro_name":"Znf_PHD","locations":[{"end":111,"start":66}],"match_end":111,"match_start":66,"name":"PHD_3"},{"dbname":"SUPERFAMILY","id":"SSF57903","interpro_description":"Zinc finger, FYVE/PHD-type","interpro_id":"IPR011011","interpro_name":"Znf_FYVE_PHD","locations":[{"end":117,"start":58}],"match_end":117,"match_start":58,"name":"FYVE/PHD zinc finger"},{"dbname":"GENE3D","id":"G3DSA:3.30.40.10","interpro_description":"Zinc finger, RING/FYVE/PHD-type","interpro_id":"IPR013083","interpro_name":"Znf_RING/FYVE/PHD","locations":[{"end":124,"start":61}],"match_end":124,"match_start":61,"name":"Zinc/RING finger domain, C3HC4 (zinc finger)"},{"dbname":"PANTHER","id":"PTHR47636","interpro_description":"Chromatin-associated regulatory protein","interpro_id":"IPR052819","interpro_name":"Chromatin_regulatory_protein","locations":[{"end":314,"start":8}],"match_end":314,"match_start":8,"name":"TRANSCRIPTIONAL REGULATORY PROTEIN RCO1"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":58,"start":1}],"match_end":58,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":50,"start":17}],"match_end":50,"match_start":17,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3561500,"start_pos":3560493,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":15,"start":1}},{"range":{"end":271,"start":258}}],"name":"cph1","ortholog_annotations":[{"gene_uniquename":"SJAG_03884","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:20816","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03884","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC16C9.05","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03884","ortholog_taxonid":4932,"ortholog_uniquename":"YMR075W","reference_uniquename":"PMID:29761456"}],"product":"Clr6 histone deacetylase associated PHD finger protein Cph1","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0008270"]}},"subset_termids":["GO:0005654","GO:0006325","GO:0006355","GO:0005694","GO:0005829","GO:0005634","GO:0006351"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005829":null,"GO:0006357":null,"GO:0008270":null,"GO:0032221":null,"GO:0045815":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03884.1"],"transcripts_by_uniquename":{"SJAG_03884.1":null},"uniprot_identifier":"B6K5B4","uniquename":"SJAG_03884"}


id: SJAG_03885
data:
  {"cv_annotations":{},"dbxrefs":["UniProtKB/TrEMBL:B6K5B5","EnsemblGenomes-Gn:SJAG_03885","EnsemblGenomes-Tr:EEB08719"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":135,"start":115}},{"range":{"end":198,"start":167}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rbm17","uniquename":"SJAG_03890"},{"name":"vps45","uniquename":"SJAG_03889"},{"name":"urb2","uniquename":"SJAG_03888"},{"name":"pom2","uniquename":"SJAG_03887"},{"name":"upf1","uniquename":"SJAG_03886"},{"uniquename":"SJAG_03885"},{"name":"cph1","uniquename":"SJAG_03884"},{"name":"mot2","uniquename":"SJAG_03883"},{"name":"nmd3","uniquename":"SJAG_03882"},{"name":"mta1","uniquename":"SJAG_03881"},{"uniquename":"SJAG_03880"}],"genes_by_uniquename":{"SJAG_03885":null},"has_protein_features":true,"interpro_matches":[{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":135,"start":115},{"end":198,"start":167}],"match_end":198,"match_start":115,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":185,"start":172}],"match_end":185,"match_start":172,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":125,"start":116}],"match_end":125,"match_start":116,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3560407,"start_pos":3559724,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":184,"start":171}}],"product":"dubious","split_by_parent_groups":{},"taxonid":4897,"taxonomic_distribution":"other","transcript_so_termid":"SO:0000234","transcripts":["SJAG_03885.1"],"transcripts_by_uniquename":{"SJAG_03885.1":null},"uniprot_identifier":"B6K5B5","uniquename":"SJAG_03885"}


id: SJAG_03886
data:
  {"cv_annotations":{"biological_process":[{"annotations":[91748],"is_not":false,"summary":null,"term":"GO:0070478"},{"annotations":[91750],"is_not":false,"summary":null,"term":"GO:2000815"}],"cellular_component":[{"annotations":[91747],"is_not":false,"summary":null,"term":"GO:0005829"}],"molecular_function":[{"annotations":[65887],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[91752],"is_not":false,"summary":null,"term":"GO:0016887"},{"annotations":[91753],"is_not":false,"summary":null,"term":"GO:0036121"},{"annotations":[78101],"is_not":false,"summary":null,"term":"GO:0003723"},{"annotations":[78102],"is_not":false,"summary":null,"term":"GO:0003724"},{"annotations":[91756],"is_not":false,"summary":null,"term":"GO:0003697"},{"annotations":[65888],"is_not":false,"summary":null,"term":"GO:0008270"}]},"dbxrefs":["InterPro:IPR040812","InterPro:IPR003593","EnsemblGenomes-Gn:SJAG_03886","EnsemblGenomes-Tr:EEB08720","InterPro:IPR027417","UniProtKB/TrEMBL:B6K5B6","GOA:B6K5B6","InterPro:IPR041677","InterPro:IPR018999","InterPro:IPR041679"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":926,"start":903}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"alx1","uniquename":"SJAG_03891"},{"name":"rbm17","uniquename":"SJAG_03890"},{"name":"vps45","uniquename":"SJAG_03889"},{"name":"urb2","uniquename":"SJAG_03888"},{"name":"pom2","uniquename":"SJAG_03887"},{"name":"upf1","uniquename":"SJAG_03886"},{"uniquename":"SJAG_03885"},{"name":"cph1","uniquename":"SJAG_03884"},{"name":"mot2","uniquename":"SJAG_03883"},{"name":"nmd3","uniquename":"SJAG_03882"},{"name":"mta1","uniquename":"SJAG_03881"}],"genes_by_uniquename":{"HGNC:9962":null,"SJAG_03886":null,"SPAC16C9.06c":null,"YMR080C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"RNA helicase (UPF2 interacting domain)","id":"PF09416","interpro_description":"RNA helicase UPF1, Cys/His rich zinc-binding domain","interpro_id":"IPR018999","interpro_name":"UPF1_CH/ZBD","locations":[{"end":195,"start":45}],"match_end":195,"match_start":45,"name":"UPF1_Zn_bind"},{"dbname":"PFAM","description":"AAA domain","id":"PF13087","interpro_description":"DNA2/NAM7 helicase-like, C-terminal","interpro_id":"IPR041679","interpro_name":"DNA2/NAM7-like_C","locations":[{"end":803,"start":607}],"match_end":803,"match_start":607,"name":"AAA_12"},{"dbname":"PFAM","description":"AAA domain","id":"PF13086","interpro_description":"DNA2/NAM7 helicase, helicase domain","interpro_id":"IPR041677","interpro_name":"DNA2/NAM7_AAA_11","locations":[{"end":500,"start":394},{"end":599,"start":519}],"match_end":599,"match_start":394,"name":"AAA_11"},{"dbname":"PFAM","description":"RNA helicase UPF1, 1B domain","id":"PF18141","interpro_description":"RNA helicase UPF1, 1B domain","interpro_id":"IPR040812","interpro_name":"UPF1_1B_dom","locations":[{"end":338,"start":247}],"match_end":338,"match_start":247,"name":"UPF1_1B_dom"},{"dbname":"CDD","description":"1B_UPF1-like","id":"cd21407","interpro_description":"RNA helicase UPF1, 1B domain","interpro_id":"IPR040812","interpro_name":"UPF1_1B_dom","locations":[{"end":337,"start":248}],"match_end":337,"match_start":248,"name":"1B_UPF1-like"},{"dbname":"CDD","description":"DEXXQc_UPF1","id":"cd18039","locations":[{"end":630,"start":394}],"match_end":630,"match_start":394,"name":"DEXXQc_UPF1"},{"dbname":"CDD","description":"ZBD_UPF1-like","id":"cd21400","interpro_description":"RNA helicase UPF1, Cys/His rich zinc-binding domain","interpro_id":"IPR018999","interpro_name":"UPF1_CH/ZBD","locations":[{"end":165,"start":45}],"match_end":165,"match_start":45,"name":"ZBD_UPF1-like"},{"dbname":"CDD","description":"SF1_C_Upf1","id":"cd18808","interpro_description":"Upf1-like, C-terminal helicase domain","interpro_id":"IPR047187","interpro_name":"SF1_C_Upf1","locations":[{"end":820,"start":631}],"match_end":820,"match_start":631,"name":"SF1_C_Upf1"},{"dbname":"PROSITE_PROFILES","description":"Upf1 cysteine-histidine-rich (CH-rich) domain profile.","id":"PS51997","interpro_description":"RNA helicase UPF1, Cys/His rich zinc-binding domain","interpro_id":"IPR018999","interpro_name":"UPF1_CH/ZBD","locations":[{"end":195,"start":38}],"match_end":195,"match_start":38,"name":"UPF1_CH_RICH"},{"dbname":"SMART","id":"SM00382","interpro_description":"AAA+ ATPase domain","interpro_id":"IPR003593","interpro_name":"AAA+_ATPase","locations":[{"end":622,"start":408}],"match_end":622,"match_start":408,"name":"AAA_5"},{"dbname":"FUNFAM","description":"Regulator of nonsense transcripts 1","id":"G3DSA:3.40.50.300:FF:000097","locations":[{"end":841,"start":630}],"match_end":841,"match_start":630},{"dbname":"SUPERFAMILY","id":"SSF52540","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":835,"start":392}],"match_end":835,"match_start":392,"name":"P-loop containing nucleoside triphosphate hydrolases"},{"dbname":"GENE3D","id":"G3DSA:2.40.30.230","locations":[{"end":338,"start":247}],"match_end":338,"match_start":247},{"dbname":"GENE3D","id":"G3DSA:3.40.50.300","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":480,"start":359},{"end":841,"start":536}],"match_end":841,"match_start":359},{"dbname":"GENE3D","id":"G3DSA:6.10.140.1240","locations":[{"end":535,"start":483}],"match_end":535,"match_start":483},{"dbname":"PANTHER","id":"PTHR10887","interpro_description":"DNA2/NAM7-like helicase","interpro_id":"IPR045055","interpro_name":"DNA2/NAM7-like","locations":[{"end":825,"start":93}],"match_end":825,"match_start":93,"name":"DNA2/NAM7 HELICASE FAMILY"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":926,"start":903}],"match_end":926,"match_start":903,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3559151,"start_pos":3556371,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":385,"start":374}}],"name":"upf1","ortholog_annotations":[{"gene_uniquename":"SJAG_03886","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:9962","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03886","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC16C9.06c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03886","ortholog_taxonid":4932,"ortholog_uniquename":"YMR080C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03886","ortholog_taxonid":4932,"ortholog_uniquename":"YMR080C","reference_uniquename":"PMID:26896847"}],"product":"ATP-dependent RNA helicase Upf1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003697","GO:0003723","GO:0008270","GO:0005524"],"not-binding":["GO:0036121","GO:0003724","GO:0016887"]}},"subset_termids":["GO:0016071","GO:0005829","GO:0140097","GO:0016853","GO:0016887","GO:0140098"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0003697":null,"GO:0003723":null,"GO:0003724":null,"GO:0005524":null,"GO:0005829":null,"GO:0008270":null,"GO:0016887":null,"GO:0036121":null,"GO:0070478":null,"GO:2000815":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03886.1"],"transcripts_by_uniquename":{"SJAG_03886.1":null},"uniprot_identifier":"B6K5B6","uniquename":"SJAG_03886"}


id: SJAG_03887
data:
  {"binding_sites":[{"assigned_by":"UniProtKB","ligand":"ATP","range":{"end":787,"start":787}}],"cv_annotations":{"biological_process":[{"annotations":[91762],"is_not":false,"summary":null,"term":"GO:0051445"},{"annotations":[91763],"is_not":false,"summary":null,"term":"GO:0010821"},{"annotations":[91764],"is_not":false,"summary":null,"term":"GO:1902412"},{"annotations":[91765],"is_not":false,"summary":null,"term":"GO:0023052"}],"cellular_component":[{"annotations":[91760],"is_not":false,"summary":null,"term":"GO:0005739"},{"annotations":[91761],"is_not":false,"summary":null,"term":"GO:0110085"}],"molecular_function":[{"annotations":[71138],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[81922],"is_not":false,"summary":null,"term":"GO:0004674"}]},"dbxrefs":["InterPro:IPR008271","EnsemblGenomes-Gn:SJAG_03887","EnsemblGenomes-Tr:EEB08721","InterPro:IPR017441","UniProtKB/TrEMBL:B6K5B7","InterPro:IPR000719","InterPro:IPR011009","GOA:B6K5B7"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":230,"start":170}},{"range":{"end":286,"start":249}},{"range":{"end":392,"start":298}},{"range":{"end":537,"start":405}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"vps4","uniquename":"SJAG_03892"},{"name":"alx1","uniquename":"SJAG_03891"},{"name":"rbm17","uniquename":"SJAG_03890"},{"name":"vps45","uniquename":"SJAG_03889"},{"name":"urb2","uniquename":"SJAG_03888"},{"name":"pom2","uniquename":"SJAG_03887"},{"name":"upf1","uniquename":"SJAG_03886"},{"uniquename":"SJAG_03885"},{"name":"cph1","uniquename":"SJAG_03884"},{"name":"mot2","uniquename":"SJAG_03883"},{"name":"nmd3","uniquename":"SJAG_03882"}],"genes_by_uniquename":{"HGNC:3093":null,"HGNC:3094":null,"HGNC:3095":null,"SJAG_03887":null,"SPAC16C9.07":null,"YJL141C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Protein kinase domain","id":"PF00069","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":1054,"start":758}],"match_end":1054,"match_start":758,"name":"Pkinase"},{"dbname":"CDD","description":"PKc_DYRK","id":"cd14210","locations":[{"end":1054,"start":744}],"match_end":1054,"match_start":744,"name":"PKc_DYRK"},{"dbname":"PROSITE_PATTERNS","description":"Protein kinases ATP-binding region signature.","id":"PS00107","interpro_description":"Protein kinase, ATP binding site","interpro_id":"IPR017441","interpro_name":"Protein_kinase_ATP_BS","locations":[{"end":787,"start":764}],"match_end":787,"match_start":764,"name":"PROTEIN_KINASE_ATP"},{"dbname":"PROSITE_PATTERNS","description":"Serine/Threonine protein kinases active-site signature.","id":"PS00108","interpro_description":"Serine/threonine-protein kinase, active site","interpro_id":"IPR008271","interpro_name":"Ser/Thr_kinase_AS","locations":[{"end":892,"start":880}],"match_end":892,"match_start":880,"name":"PROTEIN_KINASE_ST"},{"dbname":"PROSITE_PROFILES","description":"Protein kinase domain profile.","id":"PS50011","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":1054,"start":758}],"match_end":1054,"match_start":758,"name":"PROTEIN_KINASE_DOM"},{"dbname":"SMART","id":"SM00220","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":1054,"start":758}],"match_end":1054,"match_start":758,"name":"serkin_6"},{"dbname":"SUPERFAMILY","id":"SSF56112","interpro_description":"Protein kinase-like domain superfamily","interpro_id":"IPR011009","interpro_name":"Kinase-like_dom_sf","locations":[{"end":1060,"start":746}],"match_end":1060,"match_start":746,"name":"Protein kinase-like (PK-like)"},{"dbname":"GENE3D","id":"G3DSA:1.10.510.10","locations":[{"end":1055,"start":837}],"match_end":1055,"match_start":837,"name":"Transferase(Phosphotransferase) domain 1"},{"dbname":"GENE3D","id":"G3DSA:3.30.200.20","locations":[{"end":836,"start":735}],"match_end":836,"match_start":735,"name":"Phosphorylase Kinase; domain 1"},{"dbname":"PANTHER","id":"PTHR24058","interpro_description":"Serine/threonine and dual-specificity kinase","interpro_id":"IPR050494","interpro_name":"Ser_Thr_dual-spec_kinase","locations":[{"end":1055,"start":611}],"match_end":1055,"match_start":611,"name":"DUAL SPECIFICITY PROTEIN KINASE"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":230,"start":170},{"end":286,"start":249},{"end":392,"start":298},{"end":537,"start":405}],"match_end":537,"match_start":170,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":389,"start":380}],"match_end":389,"match_start":380,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":183,"start":170},{"end":201,"start":191},{"end":328,"start":319},{"end":358,"start":344},{"end":488,"start":476}],"match_end":488,"match_start":170,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":379,"start":370}],"match_end":379,"match_start":370,"name":"disorder_prediction"},{"dbname":"MOBIDB-Positive-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Positive-Polyelectrolyte","locations":[{"end":263,"start":254}],"match_end":263,"match_start":254,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3555605,"start_pos":3552312,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":388,"start":377}},{"range":{"end":594,"start":578}},{"range":{"end":975,"start":964}}],"name":"pom2","ortholog_annotations":[{"gene_uniquename":"SJAG_03887","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:3093","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03887","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:3094","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03887","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:3095","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03887","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC16C9.07","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03887","ortholog_taxonid":4932,"ortholog_uniquename":"YJL141C","reference_uniquename":"PMID:29761456"}],"product":"DYRK family protein kinase Pom2","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524"],"not-binding":["GO:0004674"]}},"subset_termids":["GO:0140096","GO:0004672","GO:0023052","GO:0016301","GO:0007005","GO:0005938","GO:0015629","GO:0000281","GO:0005739","GO:0070938"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004674":null,"GO:0005524":null,"GO:0005739":null,"GO:0010821":null,"GO:0023052":null,"GO:0051445":null,"GO:0110085":null,"GO:1902412":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03887.1"],"transcripts_by_uniquename":{"SJAG_03887.1":null},"uniprot_identifier":"B6K5B7","uniquename":"SJAG_03887"}


id: SJAG_03888
data:
  {"cv_annotations":{"biological_process":[{"annotations":[74999],"is_not":false,"summary":null,"term":"GO:0042254"}],"cellular_component":[{"annotations":[97890],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[74998],"is_not":false,"summary":null,"term":"GO:0005730"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_03888","InterPro:IPR018849","UniProtKB/TrEMBL:B6K5B8","EnsemblGenomes-Tr:EEB08722"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"ptc3","uniquename":"SJAG_03893"},{"name":"vps4","uniquename":"SJAG_03892"},{"name":"alx1","uniquename":"SJAG_03891"},{"name":"rbm17","uniquename":"SJAG_03890"},{"name":"vps45","uniquename":"SJAG_03889"},{"name":"urb2","uniquename":"SJAG_03888"},{"name":"pom2","uniquename":"SJAG_03887"},{"name":"upf1","uniquename":"SJAG_03886"},{"uniquename":"SJAG_03885"},{"name":"cph1","uniquename":"SJAG_03884"},{"name":"mot2","uniquename":"SJAG_03883"}],"genes_by_uniquename":{"HGNC:28967":null,"SJAG_03888":null,"SPAC2G11.02":null,"YJR041C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Urb2/Npa2 family","id":"PF10441","interpro_description":"Nucleolar 27S pre-rRNA processing, Urb2/Npa2, C-terminal","interpro_id":"IPR018849","interpro_name":"Urb2/Npa2_C","locations":[{"end":1315,"start":1103}],"match_end":1315,"match_start":1103,"name":"Urb2"},{"dbname":"PANTHER","id":"PTHR15682","interpro_description":"Ribosome Biogenesis Regulator","interpro_id":"IPR052609","interpro_name":"Ribosome_Biogenesis_Reg","locations":[{"end":801,"start":2}],"match_end":801,"match_start":2,"name":"UNHEALTHY RIBOSOME BIOGENESIS PROTEIN 2 HOMOLOG"}],"location":{"chromosome_name":"supercont5.2","end_pos":3551730,"start_pos":3547728,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":243,"start":226}},{"range":{"end":504,"start":489}},{"range":{"end":610,"start":597}},{"range":{"end":1053,"start":1039}}],"name":"urb2","ortholog_annotations":[{"gene_uniquename":"SJAG_03888","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:28967","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03888","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2G11.02","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03888","ortholog_taxonid":4932,"ortholog_uniquename":"YJR041C","reference_uniquename":"PMID:29761456"}],"product":"ribosome biogenesis protein Urb2","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0005829","GO:0005730","GO:0042254","GO:0005634"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005730":null,"GO:0005829":null,"GO:0042254":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03888.1"],"transcripts_by_uniquename":{"SJAG_03888.1":null},"uniprot_identifier":"B6K5B8","uniquename":"SJAG_03888"}


id: SJAG_03889
data:
  {"cv_annotations":{"biological_process":[{"annotations":[97897],"is_not":false,"summary":null,"term":"GO:0048210"},{"annotations":[80878],"is_not":false,"summary":null,"term":"GO:0006886"}],"cellular_component":[{"annotations":[97893],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[97894],"is_not":false,"summary":null,"term":"GO:0005768"},{"annotations":[80876],"is_not":false,"summary":null,"term":"GO:0000139"},{"annotations":[97896],"is_not":false,"summary":null,"term":"GO:0005634"}],"mondo":[{"annotations":[86934],"is_not":false,"summary":null,"term":"MONDO:0014118"}]},"dbxrefs":["UniProtKB/TrEMBL:B6K5B9","EnsemblGenomes-Gn:SJAG_03889","InterPro:IPR001619","InterPro:IPR027482","EnsemblGenomes-Tr:EEB08723","InterPro:IPR036045","GOA:B6K5B9"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"smn1","uniquename":"SJAG_03894"},{"name":"ptc3","uniquename":"SJAG_03893"},{"name":"vps4","uniquename":"SJAG_03892"},{"name":"alx1","uniquename":"SJAG_03891"},{"name":"rbm17","uniquename":"SJAG_03890"},{"name":"vps45","uniquename":"SJAG_03889"},{"name":"urb2","uniquename":"SJAG_03888"},{"name":"pom2","uniquename":"SJAG_03887"},{"name":"upf1","uniquename":"SJAG_03886"},{"uniquename":"SJAG_03885"},{"name":"cph1","uniquename":"SJAG_03884"}],"genes_by_uniquename":{"HGNC:14579":null,"SJAG_03889":null,"SPAC2G11.03c":null,"YGL095C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Sec1 family","id":"PF00995","interpro_description":"Sec1-like protein","interpro_id":"IPR001619","interpro_name":"Sec1-like","locations":[{"end":548,"start":22}],"match_end":548,"match_start":22,"name":"Sec1"},{"dbname":"SUPERFAMILY","id":"SSF56815","interpro_description":"Sec1-like superfamily","interpro_id":"IPR036045","interpro_name":"Sec1-like_sf","locations":[{"end":551,"start":2}],"match_end":551,"match_start":2,"name":"Sec1/munc18-like (SM) proteins"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.1910","interpro_description":"Sec1-like, domain 2","interpro_id":"IPR027482","interpro_name":"Sec1-like_dom2","locations":[{"end":228,"start":143},{"end":549,"start":468}],"match_end":549,"match_start":143},{"dbname":"GENE3D","id":"G3DSA:3.90.830.10","interpro_description":"Sec1-like, domain 3a","interpro_id":"IPR043127","interpro_name":"Sec-1-like_dom3a","locations":[{"end":343,"start":229}],"match_end":343,"match_start":229,"name":"Syntaxin Binding Protein 1; Chain A, domain 2"},{"dbname":"GENE3D","id":"G3DSA:1.25.40.60","locations":[{"end":467,"start":345}],"match_end":467,"match_start":345},{"dbname":"GENE3D","id":"G3DSA:3.40.50.2060","interpro_description":"Sec1-like, domain 1","interpro_id":"IPR043154","interpro_name":"Sec-1-like_dom1","locations":[{"end":124,"start":1}],"match_end":124,"match_start":1},{"dbname":"PANTHER","id":"PTHR11679","interpro_description":"Sec1-like protein","interpro_id":"IPR001619","interpro_name":"Sec1-like","locations":[{"end":549,"start":14}],"match_end":549,"match_start":14,"name":"VESICLE PROTEIN SORTING-ASSOCIATED"},{"dbname":"PIRSF","id":"PIRSF005715","interpro_description":"Sec1-like protein","interpro_id":"IPR001619","interpro_name":"Sec1-like","locations":[{"end":559,"start":1}],"match_end":559,"match_start":1,"name":"VPS45_Sec1"}],"location":{"chromosome_name":"supercont5.2","end_pos":3547630,"start_pos":3545864,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":300,"start":295}}],"name":"vps45","ortholog_annotations":[{"gene_uniquename":"SJAG_03889","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:14579","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03889","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2G11.03c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03889","ortholog_taxonid":4932,"ortholog_uniquename":"YGL095C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03889","ortholog_taxonid":4932,"ortholog_uniquename":"YGL095C","reference_uniquename":"PMID:26896847"}],"product":"vacuolar sorting protein Vps45","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["MONDO:0005570","GO:0005634","MONDO:0006025","GO:0005829","MONDO:0005046","GO:0005768","GO:0016192","GO:0005794","GO:0061024","GO:0031410"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000139":null,"GO:0005634":null,"GO:0005768":null,"GO:0005829":null,"GO:0006886":null,"GO:0048210":null,"MONDO:0014118":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03889.1"],"transcripts_by_uniquename":{"SJAG_03889.1":null},"uniprot_identifier":"B6K5B9","uniquename":"SJAG_03889"}


id: SJAG_03890
data:
  {"cv_annotations":{"biological_process":[{"annotations":[97901],"is_not":false,"summary":null,"term":"GO:0000380"},{"annotations":[97902],"is_not":false,"summary":null,"term":"GO:0045292"}],"cellular_component":[{"annotations":[97899],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[97900],"is_not":false,"summary":null,"term":"GO:0005634"}]},"dbxrefs":["GOA:B6K5C0","EnsemblGenomes-Gn:SJAG_03890","EnsemblGenomes-Tr:EEB08724","InterPro:IPR040052","UniProtKB/TrEMBL:B6K5C0","InterPro:IPR000467"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":61,"start":25}},{"range":{"end":119,"start":75}},{"range":{"end":282,"start":259}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_03895"},{"name":"smn1","uniquename":"SJAG_03894"},{"name":"ptc3","uniquename":"SJAG_03893"},{"name":"vps4","uniquename":"SJAG_03892"},{"name":"alx1","uniquename":"SJAG_03891"},{"name":"rbm17","uniquename":"SJAG_03890"},{"name":"vps45","uniquename":"SJAG_03889"},{"name":"urb2","uniquename":"SJAG_03888"},{"name":"pom2","uniquename":"SJAG_03887"},{"name":"upf1","uniquename":"SJAG_03886"},{"uniquename":"SJAG_03885"}],"genes_by_uniquename":{"HGNC:16944":null,"SJAG_03890":null,"SPAC2G11.04":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"G-patch domain","id":"PF01585","interpro_description":"G-patch domain","interpro_id":"IPR000467","interpro_name":"G_patch_dom","locations":[{"end":274,"start":244}],"match_end":274,"match_start":244,"name":"G-patch"},{"dbname":"PROSITE_PROFILES","description":"G-patch domain profile.","id":"PS50174","interpro_description":"G-patch domain","interpro_id":"IPR000467","interpro_name":"G_patch_dom","locations":[{"end":282,"start":243}],"match_end":282,"match_start":243,"name":"G_PATCH"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":61,"start":25},{"end":119,"start":75},{"end":282,"start":259}],"match_end":282,"match_start":25,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":111,"start":96}],"match_end":111,"match_start":96,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3545540,"start_pos":3544692,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":83,"start":66}}],"name":"rbm17","ortholog_annotations":[{"gene_uniquename":"SJAG_03890","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:16944","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03890","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2G11.04","reference_uniquename":"PMID:21511999"}],"product":"RNA-binding protein, G-patch type, alternative splicing factor 45","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0005634","GO:0005829","GO:0016071"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000380":null,"GO:0005634":null,"GO:0005829":null,"GO:0045292":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03890.1"],"transcripts_by_uniquename":{"SJAG_03890.1":null},"uniprot_identifier":"B6K5C0","uniquename":"SJAG_03890"}


id: SJAG_03891
data:
  {"alleles_by_uniquename":{"SJAG_03891:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03891","name":"alx1delta","uniquename":"SJAG_03891:allele-1"}},"coiled_coil_coords":[{"range":{"end":51,"start":31}},{"range":{"end":444,"start":424}}],"cv_annotations":{"biological_process":[{"annotations":[121274],"is_not":false,"summary":null,"term":"GO:0007084"},{"annotations":[97908],"is_not":false,"summary":null,"term":"GO:0016192"}],"cellular_component":[{"annotations":[97903],"is_not":false,"summary":null,"term":"GO:0032153"},{"annotations":[97904],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[77049],"is_not":false,"summary":null,"term":"GO:0005768"},{"annotations":[121269],"is_not":false,"summary":null,"term":"GO:0044732"},{"annotations":[121268],"is_not":false,"summary":null,"term":"GO:0005635"}],"mondo":[{"annotations":[87660],"is_not":false,"summary":null,"term":"MONDO:0031060"}],"single_locus_phenotype":[{"annotations":[121270],"is_not":false,"summary":null,"term":"FYPO:0007772"}]},"dbxrefs":["InterPro:IPR025304","EnsemblGenomes-Gn:SJAG_03891","EnsemblGenomes-Tr:EEB08725","InterPro:IPR038499","InterPro:IPR004328","UniProtKB/TrEMBL:B6K5C1"],"deletion_viability":"unknown","feature_publications":[{"reference_uniquename":"PMID:32243490","source":"canto"}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"uba42","uniquename":"SJAG_03896"},{"uniquename":"SJAG_03895"},{"name":"smn1","uniquename":"SJAG_03894"},{"name":"ptc3","uniquename":"SJAG_03893"},{"name":"vps4","uniquename":"SJAG_03892"},{"name":"alx1","uniquename":"SJAG_03891"},{"name":"rbm17","uniquename":"SJAG_03890"},{"name":"vps45","uniquename":"SJAG_03889"},{"name":"urb2","uniquename":"SJAG_03888"},{"name":"pom2","uniquename":"SJAG_03887"},{"name":"upf1","uniquename":"SJAG_03886"}],"genes_by_uniquename":{"HGNC:8766":null,"SJAG_01242":null,"SJAG_03891":null,"SPAC2G11.05c":null,"YOR275C":null},"genetic_interactions":[[{"gene_a_uniquename":"SJAG_01242","gene_b_uniquename":"SJAG_03891","interaction_type":"Phenotypic Enhancement"},[{"annotation_date":"2021-07-09","reference_uniquename":"PMID:32243490","source_database":"JaponicusDB","throughput":"low"}]]],"genotypes_by_uniquename":{"alx1delta":{"display_name":"alx1delta","display_uniquename":"alx1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03891:allele-1","expression":"Null"}]}]}},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"ALIX V-shaped domain binding to HIV","id":"PF13949","interpro_description":"ALIX V-shaped domain","interpro_id":"IPR025304","interpro_name":"ALIX_V_dom","locations":[{"end":685,"start":407}],"match_end":685,"match_start":407,"name":"ALIX_LYPXL_bnd"},{"dbname":"PFAM","description":"BRO1-like domain","id":"PF03097","interpro_description":"BRO1 domain","interpro_id":"IPR004328","interpro_name":"BRO1_dom","locations":[{"end":363,"start":4}],"match_end":363,"match_start":4,"name":"BRO1"},{"dbname":"CDD","description":"BRO1_ScRim20-like","id":"cd09241","locations":[{"end":354,"start":2}],"match_end":354,"match_start":2,"name":"BRO1_ScRim20-like"},{"dbname":"PROSITE_PROFILES","description":"BRO1 domain profile.","id":"PS51180","interpro_description":"BRO1 domain","interpro_id":"IPR004328","interpro_name":"BRO1_dom","locations":[{"end":387,"start":2}],"match_end":387,"match_start":2,"name":"BRO1"},{"dbname":"SMART","id":"SM01041","interpro_description":"BRO1 domain","interpro_id":"IPR004328","interpro_name":"BRO1_dom","locations":[{"end":371,"start":2}],"match_end":371,"match_start":2,"name":"BRO1_2"},{"dbname":"GENE3D","id":"G3DSA:1.25.40.280","interpro_description":"BRO1 domain superfamily","interpro_id":"IPR038499","interpro_name":"BRO1_sf","locations":[{"end":347,"start":1}],"match_end":347,"match_start":1,"name":"alix/aip1 like domains"},{"dbname":"GENE3D","id":"G3DSA:1.20.140.50","locations":[{"end":530,"start":397},{"end":668,"start":625}],"match_end":668,"match_start":397,"name":"alix/aip1 like domains"},{"dbname":"GENE3D","id":"G3DSA:1.20.120.560","locations":[{"end":396,"start":360},{"end":624,"start":531}],"match_end":624,"match_start":360,"name":"alix/aip1 in complex with the ypdl late domain"},{"dbname":"PANTHER","id":"PTHR23030","locations":[{"end":701,"start":1}],"match_end":701,"match_start":1,"name":"PCD6 INTERACTING PROTEIN-RELATED"},{"dbname":"COILS","id":"Coil","locations":[{"end":51,"start":31},{"end":444,"start":424}],"match_end":444,"match_start":31,"name":"Coil"}],"location":{"chromosome_name":"supercont5.2","end_pos":3544585,"start_pos":3542414,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":456,"start":436}},{"range":{"end":490,"start":478}},{"range":{"end":608,"start":599}}],"name":"alx1","ortholog_annotations":[{"gene_uniquename":"SJAG_03891","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:8766","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03891","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2G11.05c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03891","ortholog_taxonid":4932,"ortholog_uniquename":"YOR275C","reference_uniquename":"PMID:29761456"}],"product":"ESCRT-III regulator Alx1","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:29761456":null,"PMID:32243490":null},"split_by_parent_groups":{"single_locus_phenotype":{"cell_phenotype":["FYPO:0007772"]}},"subset_termids":["GO:0005829","FYPO:0001320","GO:0015630","GO:0005816","GO:0005634","MONDO:0006025","GO:0061024","MONDO:0700092","GO:0031410","GO:0016192","GO:0005768"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"FYPO:0007772":null,"FYPO_EXT:0000003":null,"GO:0005635":null,"GO:0005768":null,"GO:0005829":null,"GO:0007084":null,"GO:0016192":null,"GO:0032153":null,"GO:0044732":null,"MONDO:0031060":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03891.1"],"transcripts_by_uniquename":{"SJAG_03891.1":null},"uniprot_identifier":"B6K5C1","uniquename":"SJAG_03891"}


id: SJAG_03892
data:
  {"alleles_by_uniquename":{"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"},"SJAG_03783:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03783","name":"vps24delta","uniquename":"SJAG_03783:allele-1"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"},"SJAG_03892:allele-2":{"allele_type":"amino_acid_mutation","description":"E233Q","gene_uniquename":"SJAG_03892","name":"Vps4-EQ","uniquename":"SJAG_03892:allele-2"},"SJAG_03892:allele-3":{"allele_type":"amino_acid_mutation","description":"I307T L327S","gene_uniquename":"SJAG_03892","name":"vps4-ts","uniquename":"SJAG_03892:allele-3"},"SJAG_04489:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04489","name":"did4delta","uniquename":"SJAG_04489:allele-1"},"SJAG_05207:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05207","name":"cmp7delta","uniquename":"SJAG_05207:allele-1"}},"cv_annotations":{"biological_process":[{"annotations":[97914],"is_not":false,"summary":null,"term":"GO:0007084"},{"annotations":[97915],"is_not":false,"summary":null,"term":"GO:0043328"},{"annotations":[75357],"is_not":false,"summary":null,"term":"GO:0090611"},{"annotations":[75358],"is_not":false,"summary":null,"term":"GO:0007033"}],"cellular_component":[{"annotations":[97910],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[121587],"is_not":false,"summary":null,"term":"GO:0032585"},{"annotations":[121588],"is_not":false,"summary":null,"term":"GO:0031965"},{"annotations":[121589],"is_not":false,"summary":null,"term":"GO:0005816"}],"molecular_function":[{"annotations":[62065],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[75352],"is_not":false,"summary":null,"term":"GO:0016887"}],"mondo":[{"annotations":[88492],"is_not":false,"summary":null,"term":"MONDO:0035819"}],"multi_locus_phenotype":[{"annotations":[121594],"is_not":false,"summary":null,"term":"FYPO:0007771"},{"annotations":[121605],"is_not":false,"summary":null,"term":"FYPO:0001132"}],"single_locus_phenotype":[{"annotations":[121604],"is_not":false,"summary":null,"term":"FYPO:0004718"},{"annotations":[121576,121577,121579,121580,121593],"is_not":false,"summary":null,"term":"FYPO:0007771"},{"annotations":[121575],"is_not":false,"summary":null,"term":"FYPO:0007772"},{"annotations":[121578],"is_not":false,"summary":null,"term":"FYPO:0007770"},{"annotations":[121606],"is_not":false,"summary":null,"term":"FYPO:0001234"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_03892","GOA:B6K5C2","InterPro:IPR003593","InterPro:IPR015415","InterPro:IPR007330","EnsemblGenomes-Tr:EEB08726","InterPro:IPR003959","InterPro:IPR036181","UniProtKB/TrEMBL:B6K5C2","InterPro:IPR041569","InterPro:IPR027417","InterPro:IPR003960"],"deletion_viability":"viable","disordered_region_coords":[{"range":{"end":105,"start":83}}],"feature_publications":[{"reference_uniquename":"PMID:32109380","source":"canto"}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"prh1","uniquename":"SJAG_03897"},{"name":"uba42","uniquename":"SJAG_03896"},{"uniquename":"SJAG_03895"},{"name":"smn1","uniquename":"SJAG_03894"},{"name":"ptc3","uniquename":"SJAG_03893"},{"name":"vps4","uniquename":"SJAG_03892"},{"name":"alx1","uniquename":"SJAG_03891"},{"name":"rbm17","uniquename":"SJAG_03890"},{"name":"vps45","uniquename":"SJAG_03889"},{"name":"urb2","uniquename":"SJAG_03888"},{"name":"pom2","uniquename":"SJAG_03887"}],"genes_by_uniquename":{"HGNC:10895":null,"HGNC:13488":null,"SJAG_01050":null,"SJAG_01242":null,"SJAG_01745":null,"SJAG_03783":null,"SJAG_03892":null,"SJAG_04489":null,"SJAG_05207":null,"SPAC2G11.06":null,"YPR173C":null},"genotypes_by_uniquename":{"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"Vps4-EQ(E233Q aa)","display_uniquename":"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-2","expression":"Not assayed or wild type"}]}]},"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cmp7delta vps4-ts(I307T L327S aa)","display_uniquename":"cmp7delta__vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_05207:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]},"did4delta":{"display_name":"did4delta","display_uniquename":"did4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04489:allele-1","expression":"Null"}]}]},"nur1delta__vps4delta":{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]},"vps24delta":{"display_name":"vps24delta","display_uniquename":"vps24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03783:allele-1","expression":"Null"}]}]},"vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"vps4-ts(I307T L327S aa)","display_uniquename":"vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]},"vps4delta":{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"ATPase family associated with various cellular activities (AAA)","id":"PF00004","interpro_description":"ATPase, AAA-type, core","interpro_id":"IPR003959","interpro_name":"ATPase_AAA_core","locations":[{"end":298,"start":169}],"match_end":298,"match_start":169,"name":"AAA"},{"dbname":"PFAM","description":"Vps4 C terminal oligomerisation domain","id":"PF09336","interpro_description":"Spastin/Vps4, C-terminal","interpro_id":"IPR015415","interpro_name":"Spast_Vps4_C","locations":[{"end":433,"start":373}],"match_end":433,"match_start":373,"name":"Vps4_C"},{"dbname":"PFAM","description":"MIT (microtubule interacting and transport) domain","id":"PF04212","interpro_description":"MIT domain","interpro_id":"IPR007330","interpro_name":"MIT_dom","locations":[{"end":71,"start":7}],"match_end":71,"match_start":7,"name":"MIT"},{"dbname":"PFAM","description":"AAA+ lid domain","id":"PF17862","interpro_description":"AAA ATPase, AAA+ lid domain","interpro_id":"IPR041569","interpro_name":"AAA_lid_3","locations":[{"end":359,"start":321}],"match_end":359,"match_start":321,"name":"AAA_lid_3"},{"dbname":"CDD","description":"MIT_VPS4","id":"cd02678","interpro_description":"Vacuolar protein sorting-associated protein 4, MIT domain","interpro_id":"IPR045253","interpro_name":"VPS4_MIT","locations":[{"end":77,"start":5}],"match_end":77,"match_start":5,"name":"MIT_VPS4"},{"dbname":"PROSITE_PATTERNS","description":"AAA-protein family signature.","id":"PS00674","interpro_description":"ATPase, AAA-type, conserved site","interpro_id":"IPR003960","interpro_name":"ATPase_AAA_CS","locations":[{"end":289,"start":270}],"match_end":289,"match_start":270,"name":"AAA"},{"dbname":"SMART","id":"SM00745","interpro_description":"MIT domain","interpro_id":"IPR007330","interpro_name":"MIT_dom","locations":[{"end":80,"start":3}],"match_end":80,"match_start":3,"name":"smart"},{"dbname":"SMART","id":"SM00382","interpro_description":"AAA+ ATPase domain","interpro_id":"IPR003593","interpro_name":"AAA+_ATPase","locations":[{"end":300,"start":165}],"match_end":300,"match_start":165,"name":"AAA_5"},{"dbname":"FUNFAM","description":"vacuolar protein sorting-associated protein 4A","id":"G3DSA:1.10.8.60:FF:000015","locations":[{"end":416,"start":300}],"match_end":416,"match_start":300},{"dbname":"FUNFAM","description":"Vacuolar protein sorting-associated protein 4","id":"G3DSA:3.40.50.300:FF:000043","locations":[{"end":306,"start":128}],"match_end":306,"match_start":128},{"dbname":"FUNFAM","description":"Vacuolar protein sorting-associated protein 4","id":"G3DSA:1.20.58.80:FF:000004","locations":[{"end":77,"start":5}],"match_end":77,"match_start":5},{"dbname":"SUPERFAMILY","id":"SSF52540","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":429,"start":128}],"match_end":429,"match_start":128,"name":"P-loop containing nucleoside triphosphate hydrolases"},{"dbname":"SUPERFAMILY","id":"SSF116846","interpro_description":"MIT domain superfamily","interpro_id":"IPR036181","interpro_name":"MIT_dom_sf","locations":[{"end":92,"start":1}],"match_end":92,"match_start":1,"name":"MIT domain"},{"dbname":"GENE3D","id":"G3DSA:1.20.58.80","locations":[{"end":80,"start":1}],"match_end":80,"match_start":1},{"dbname":"GENE3D","id":"G3DSA:1.10.8.60","locations":[{"end":416,"start":300}],"match_end":416,"match_start":300},{"dbname":"GENE3D","id":"G3DSA:3.40.50.300","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":299,"start":128},{"end":425,"start":417}],"match_end":425,"match_start":128},{"dbname":"PANTHER","id":"PTHR23074","interpro_description":"Microtubule-severing AAA ATPase","interpro_id":"IPR050304","interpro_name":"MT-severing_AAA_ATPase","locations":[{"end":433,"start":24}],"match_end":433,"match_start":24,"name":"AAA DOMAIN-CONTAINING"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":105,"start":83}],"match_end":105,"match_start":83,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3542021,"start_pos":3540496,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":250,"start":240}}],"name":"vps4","ortholog_annotations":[{"gene_uniquename":"SJAG_03892","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10895","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03892","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:13488","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03892","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2G11.06","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03892","ortholog_taxonid":4932,"ortholog_uniquename":"YPR173C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03892","ortholog_taxonid":4932,"ortholog_uniquename":"YPR173C","reference_uniquename":"PMID:26896847"}],"physical_interactions":[{"annotation_date":"2021-06-17","evidence":"Reconstituted Complex","gene_uniquename":"SJAG_01242","interactor_uniquename":"SJAG_03892","reference_uniquename":"PMID:32109380","source_database":"JaponicusDB","throughput":"low"},{"annotation_date":"2021-06-17","evidence":"Reconstituted Complex","gene_uniquename":"SJAG_04489","interactor_uniquename":"SJAG_03892","reference_uniquename":"PMID:32109380","source_database":"JaponicusDB","throughput":"low"},{"annotation_date":"2021-06-17","evidence":"Reconstituted Complex","gene_uniquename":"SJAG_05207","interactor_uniquename":"SJAG_03892","reference_uniquename":"PMID:32109380","source_database":"JaponicusDB","throughput":"low"}],"product":"AAA family ATPase Vps4","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null,"PMID:32109380":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524"],"not-binding":["GO:0016887"]},"multi_locus_phenotype":{"cell_phenotype":["FYPO:0001132","FYPO:0007771"]},"single_locus_phenotype":{"cell_phenotype":["FYPO:0007770","FYPO:0007772","FYPO:0004718","FYPO:0007771"],"population_phenotype":["FYPO:0001234"]}},"subset_termids":["FYPO:0000138","GO:0016192","GO:0030163","FYPO:0000139","GO:0031410","FYPO:0002058","FYPO:0001320","GO:0061024","GO:0005829","GO:0005768","GO:0005634","GO:0015630","GO:0005816","GO:0016887"],"target_of_annotations":[{"assigned_by":"JaponicusDB","date":"2021-06-17","evidence":"Microscopy","ext_rel_display_name":"affected by mutation in","gene":"SJAG_04489","genotype_uniquename":"did4delta","ontology_name":"fission_yeast_phenotype","reference_uniquename":"PMID:32109380","show_in_summary":true},{"assigned_by":"JaponicusDB","date":"2021-06-17","evidence":"Microscopy","ext_rel_display_name":"affected by mutation in","gene":"SJAG_03783","genotype_uniquename":"vps24delta","ontology_name":"fission_yeast_phenotype","reference_uniquename":"PMID:32109380","show_in_summary":true}],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0001132":null,"FYPO:0001234":null,"FYPO:0004718":null,"FYPO:0007770":null,"FYPO:0007771":null,"FYPO:0007772":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"GO:0000093":null,"GO:0005524":null,"GO:0005816":null,"GO:0005829":null,"GO:0007033":null,"GO:0007084":null,"GO:0016887":null,"GO:0031965":null,"GO:0032585":null,"GO:0043328":null,"GO:0090611":null,"MONDO:0035819":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03892.1"],"transcripts_by_uniquename":{"SJAG_03892.1":null},"uniprot_identifier":"B6K5C2","uniquename":"SJAG_03892"}


id: SJAG_03893
data:
  {"cv_annotations":{"biological_process":[{"annotations":[97922],"is_not":false,"summary":null,"term":"GO:0071470"},{"annotations":[97923],"is_not":false,"summary":null,"term":"GO:1903753"}],"cellular_component":[{"annotations":[97920],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[97921],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[66351],"is_not":false,"summary":null,"term":"GO:0043169"},{"annotations":[97925],"is_not":false,"summary":null,"term":"GO:1990439"}]},"dbxrefs":["InterPro:IPR000222","InterPro:IPR001932","EnsemblGenomes-Tr:EEB08727","EnsemblGenomes-Gn:SJAG_03893","InterPro:IPR036457","UniProtKB/TrEMBL:B6K5C3","InterPro:IPR015655","GOA:B6K5C3"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":414,"start":392}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rqh1","uniquename":"SJAG_03898"},{"name":"prh1","uniquename":"SJAG_03897"},{"name":"uba42","uniquename":"SJAG_03896"},{"uniquename":"SJAG_03895"},{"name":"smn1","uniquename":"SJAG_03894"},{"name":"ptc3","uniquename":"SJAG_03893"},{"name":"vps4","uniquename":"SJAG_03892"},{"name":"alx1","uniquename":"SJAG_03891"},{"name":"rbm17","uniquename":"SJAG_03890"},{"name":"vps45","uniquename":"SJAG_03889"},{"name":"urb2","uniquename":"SJAG_03888"}],"genes_by_uniquename":{"HGNC:9278":null,"SJAG_03893":null,"SPAC2G11.07c":null,"YBL056W":null,"YER089C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Protein phosphatase 2C","id":"PF00481","interpro_description":"PPM-type phosphatase-like domain","interpro_id":"IPR001932","interpro_name":"PPM-type_phosphatase-like_dom","locations":[{"end":273,"start":24}],"match_end":273,"match_start":24,"name":"PP2C"},{"dbname":"CDD","description":"PP2Cc","id":"cd00143","interpro_description":"PPM-type phosphatase-like domain","interpro_id":"IPR001932","interpro_name":"PPM-type_phosphatase-like_dom","locations":[{"end":288,"start":22}],"match_end":288,"match_start":22,"name":"PP2Cc"},{"dbname":"PROSITE_PATTERNS","description":"PPM-type phosphatase domain signature.","id":"PS01032","interpro_description":"PPM-type phosphatase, divalent cation binding","interpro_id":"IPR000222","interpro_name":"PP2C_BS","locations":[{"end":65,"start":57}],"match_end":65,"match_start":57,"name":"PPM_1"},{"dbname":"PROSITE_PROFILES","description":"PPM-type phosphatase domain profile.","id":"PS51746","interpro_description":"PPM-type phosphatase-like domain","interpro_id":"IPR001932","interpro_name":"PPM-type_phosphatase-like_dom","locations":[{"end":288,"start":23}],"match_end":288,"match_start":23,"name":"PPM_2"},{"dbname":"SMART","id":"SM00332","interpro_description":"PPM-type phosphatase-like domain","interpro_id":"IPR001932","interpro_name":"PPM-type_phosphatase-like_dom","locations":[{"end":286,"start":13}],"match_end":286,"match_start":13,"name":"PP2C_4"},{"dbname":"FUNFAM","description":"Protein phosphatase 2C","id":"G3DSA:3.60.40.10:FF:000016","locations":[{"end":294,"start":1}],"match_end":294,"match_start":1},{"dbname":"SUPERFAMILY","id":"SSF81606","interpro_description":"PPM-type phosphatase-like domain superfamily","interpro_id":"IPR036457","interpro_name":"PPM-type-like_dom_sf","locations":[{"end":288,"start":3}],"match_end":288,"match_start":3,"name":"PP2C-like"},{"dbname":"GENE3D","id":"G3DSA:3.60.40.10","interpro_description":"PPM-type phosphatase-like domain superfamily","interpro_id":"IPR036457","interpro_name":"PPM-type-like_dom_sf","locations":[{"end":296,"start":1}],"match_end":296,"match_start":1},{"dbname":"PANTHER","id":"PTHR13832","interpro_description":"Protein phosphatase 2C","interpro_id":"IPR015655","interpro_name":"PP2C","locations":[{"end":285,"start":23}],"match_end":285,"match_start":23,"name":"PROTEIN PHOSPHATASE 2C"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":414,"start":392}],"match_end":414,"match_start":392,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3539450,"start_pos":3537890,"strand":"forward"},"name":"ptc3","ortholog_annotations":[{"gene_uniquename":"SJAG_03893","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:9278","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03893","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2G11.07c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03893","ortholog_taxonid":4932,"ortholog_uniquename":"YBL056W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03893","ortholog_taxonid":4932,"ortholog_uniquename":"YER089C","reference_uniquename":"PMID:29761456"}],"product":"serine/threonine protein phosphatase PP2C catalytic subunit Ptc3","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0043169"],"not-binding":["GO:1990439"]}},"subset_termids":["GO:0140096","GO:0004721","GO:0016788","GO:0023052","GO:0005634","GO:0005829"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005634":null,"GO:0005829":null,"GO:0043169":null,"GO:0071470":null,"GO:1903753":null,"GO:1990439":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03893.1"],"transcripts_by_uniquename":{"SJAG_03893.1":null},"uniprot_identifier":"B6K5C3","uniquename":"SJAG_03893"}


id: SJAG_03894
data:
  {"cv_annotations":{"biological_process":[{"annotations":[97930],"is_not":false,"summary":null,"term":"GO:0045292"},{"annotations":[97931],"is_not":false,"summary":null,"term":"GO:0000387"}],"cellular_component":[{"annotations":[97928],"is_not":false,"summary":null,"term":"GO:0005634"},{"annotations":[97929],"is_not":false,"summary":null,"term":"GO:0032797"}],"mondo":[{"annotations":[88106],"is_not":false,"summary":null,"term":"MONDO:0009669"},{"annotations":[88362],"is_not":false,"summary":null,"term":"MONDO:0009673"},{"annotations":[87968],"is_not":false,"summary":null,"term":"MONDO:0009672"},{"annotations":[88128],"is_not":false,"summary":null,"term":"MONDO:0010056"}]},"dbxrefs":["InterPro:IPR040424","GOA:B6K5C4","EnsemblGenomes-Tr:EEB08728","UniProtKB/TrEMBL:B6K5C4","EnsemblGenomes-Gn:SJAG_03894"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":123,"start":30}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"atg22","uniquename":"SJAG_03899"},{"name":"rqh1","uniquename":"SJAG_03898"},{"name":"prh1","uniquename":"SJAG_03897"},{"name":"uba42","uniquename":"SJAG_03896"},{"uniquename":"SJAG_03895"},{"name":"smn1","uniquename":"SJAG_03894"},{"name":"ptc3","uniquename":"SJAG_03893"},{"name":"vps4","uniquename":"SJAG_03892"},{"name":"alx1","uniquename":"SJAG_03891"},{"name":"rbm17","uniquename":"SJAG_03890"},{"name":"vps45","uniquename":"SJAG_03889"}],"genes_by_uniquename":{"HGNC:11117":null,"SJAG_03894":null,"SPAC2G11.08c":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Survival Motor Neuron, YG-box","id":"PF20635","locations":[{"end":150,"start":112}],"match_end":150,"match_start":112,"name":"SMN_YG-box"},{"dbname":"CDD","description":"SMN_N","id":"cd22851","locations":[{"end":35,"start":4}],"match_end":35,"match_start":4,"name":"SMN_N"},{"dbname":"PANTHER","id":"PTHR39267","interpro_description":"SMN complex subunit Smn1","interpro_id":"IPR040424","interpro_name":"Smn1","locations":[{"end":154,"start":83}],"match_end":154,"match_start":83,"name":"SURVIVAL MOTOR NEURON-LIKE PROTEIN 1"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":123,"start":30}],"match_end":123,"match_start":30,"name":"disorder_prediction"},{"dbname":"MOBIDB-Negative-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Negative-Polyelectrolyte","locations":[{"end":75,"start":64}],"match_end":75,"match_start":64,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":99,"start":88}],"match_end":99,"match_start":88,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":87,"start":77}],"match_end":87,"match_start":77,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3537056,"start_pos":3536586,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":73,"start":60}},{"range":{"end":119,"start":110}},{"range":{"end":144,"start":136}}],"name":"smn1","ortholog_annotations":[{"gene_uniquename":"SJAG_03894","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:11117","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03894","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2G11.08c","reference_uniquename":"PMID:21511999"}],"product":"SMN complex subunit Smn1/Gem1","references_by_uniquename":{"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0016071","MONDO:0005559","GO:0005634","MONDO:0005244","GO:0065003"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000387":null,"GO:0005634":null,"GO:0032797":null,"GO:0045292":null,"MONDO:0009669":null,"MONDO:0009672":null,"MONDO:0009673":null,"MONDO:0010056":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03894.1"],"transcripts_by_uniquename":{"SJAG_03894.1":null},"uniprot_identifier":"B6K5C4","uniquename":"SJAG_03894"}


id: SJAG_03895
data:
  {"cv_annotations":{"biological_process":[{"annotations":[70855],"is_not":false,"summary":null,"term":"GO:0098655"}],"cellular_component":[{"annotations":[97932],"is_not":false,"summary":null,"term":"GO:0000329"},{"annotations":[81715],"is_not":false,"summary":null,"term":"GO:0005886"}],"molecular_function":[{"annotations":[81714],"is_not":false,"summary":null,"term":"GO:0005227"}],"mondo":[{"annotations":[88805],"is_not":false,"summary":null,"term":"MONDO:0032871"},{"annotations":[88768],"is_not":false,"summary":null,"term":"MONDO:0031019"}]},"dbxrefs":["InterPro:IPR003864","GOA:B6K5C5","EnsemblGenomes-Gn:SJAG_03895","EnsemblGenomes-Tr:EEB08729","UniProtKB/TrEMBL:B6K5C5","InterPro:IPR027815","InterPro:IPR032880"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"taf1","uniquename":"SJAG_03900"},{"name":"atg22","uniquename":"SJAG_03899"},{"name":"rqh1","uniquename":"SJAG_03898"},{"name":"prh1","uniquename":"SJAG_03897"},{"name":"uba42","uniquename":"SJAG_03896"},{"uniquename":"SJAG_03895"},{"name":"smn1","uniquename":"SJAG_03894"},{"name":"ptc3","uniquename":"SJAG_03893"},{"name":"vps4","uniquename":"SJAG_03892"},{"name":"alx1","uniquename":"SJAG_03891"},{"name":"rbm17","uniquename":"SJAG_03890"}],"genes_by_uniquename":{"HGNC:17735":null,"HGNC:23787":null,"HGNC:29118":null,"SJAG_03895":null,"SPAC2G11.09":null,"YLR241W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Calcium-dependent channel, 7TM region, putative phosphate","id":"PF02714","interpro_description":"CSC1/OSCA1-like, 7TM region","interpro_id":"IPR003864","interpro_name":"CSC1/OSCA1-like_7TM","locations":[{"end":691,"start":423}],"match_end":691,"match_start":423,"name":"RSN1_7TM"},{"dbname":"PFAM","description":"Cytosolic domain of 10TM putative phosphate transporter","id":"PF14703","interpro_description":"CSC1/OSCA1-like, cytosolic domain","interpro_id":"IPR027815","interpro_name":"CSC1/OSCA1-like_cyt","locations":[{"end":411,"start":218}],"match_end":411,"match_start":218,"name":"PHM7_cyt"},{"dbname":"PFAM","description":"Late exocytosis, associated with Golgi transport","id":"PF13967","interpro_description":"CSC1/OSCA1-like, N-terminal transmembrane domain","interpro_id":"IPR032880","interpro_name":"CSC1/OSCA1-like_N","locations":[{"end":196,"start":23}],"match_end":196,"match_start":23,"name":"RSN1_TM"},{"dbname":"PANTHER","id":"PTHR13018","interpro_description":"Calcium permeable stress-gated cation channel 1-like","interpro_id":"IPR045122","interpro_name":"Csc1-like","locations":[{"end":763,"start":21}],"match_end":763,"match_start":21,"name":"PROBABLE MEMBRANE PROTEIN DUF221-RELATED"}],"location":{"chromosome_name":"supercont5.2","end_pos":3536455,"start_pos":3533667,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":435,"start":430}}],"ortholog_annotations":[{"gene_uniquename":"SJAG_03895","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:17735","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03895","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:23787","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03895","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:29118","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03895","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2G11.09","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03895","ortholog_taxonid":4932,"ortholog_uniquename":"YLR241W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03895","ortholog_taxonid":4932,"ortholog_uniquename":"YLR241W","reference_uniquename":"PMID:26896847"}],"product":"plasma membrane calcium permeable gated cation channel","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0005227"]}},"subset_termids":["MONDO:0005559","GO:0005773","GO:0055085","GO:0022857","GO:0005886"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000329":null,"GO:0005227":null,"GO:0005886":null,"GO:0098655":null,"MONDO:0031019":null,"MONDO:0032871":null},"tm_domain_coords":[{"assigned_by":"TMHMM","range":{"end":44,"start":27}},{"assigned_by":"TMHMM","range":{"end":119,"start":97}},{"assigned_by":"TMHMM","range":{"end":198,"start":176}},{"assigned_by":"TMHMM","range":{"end":446,"start":424}},{"assigned_by":"TMHMM","range":{"end":498,"start":476}},{"assigned_by":"TMHMM","range":{"end":541,"start":519}},{"assigned_by":"TMHMM","range":{"end":587,"start":565}},{"assigned_by":"TMHMM","range":{"end":630,"start":608}},{"assigned_by":"TMHMM","range":{"end":656,"start":634}},{"assigned_by":"TMHMM","range":{"end":718,"start":696}}],"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03895.1"],"transcripts_by_uniquename":{"SJAG_03895.1":null},"uniprot_identifier":"B6K5C5","uniquename":"SJAG_03895"}


id: SJAG_03896
data:
  {"active_sites":[{"assigned_by":"UniProtKB","range":{"end":206,"start":206}},{"assigned_by":"UniProtKB","range":{"end":365,"start":365}}],"binding_sites":[{"assigned_by":"UniProtKB","ligand":"ATP","range":{"end":59,"start":59}},{"assigned_by":"UniProtKB","ligand":"ATP","range":{"end":80,"start":80}},{"assigned_by":"UniProtKB","ligand":"ATP","range":{"end":91,"start":87}},{"assigned_by":"UniProtKB","ligand":"ATP","range":{"end":104,"start":104}},{"assigned_by":"UniProtKB","ligand":"ATP","range":{"end":149,"start":148}},{"assigned_by":"UniProtKB","ligand":"Zn(2+)","range":{"end":189,"start":189}},{"assigned_by":"UniProtKB","ligand":"Zn(2+)","range":{"end":192,"start":192}},{"assigned_by":"UniProtKB","ligand":"Zn(2+)","range":{"end":270,"start":270}},{"assigned_by":"UniProtKB","ligand":"Zn(2+)","range":{"end":273,"start":273}}],"cv_annotations":{"biological_process":[{"annotations":[97939],"is_not":false,"summary":null,"term":"GO:0034599"},{"annotations":[76088],"is_not":false,"summary":null,"term":"GO:0032447"},{"annotations":[76083],"is_not":false,"summary":null,"term":"GO:0002143"}],"cellular_component":[{"annotations":[63071],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[97938],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[63067],"is_not":false,"summary":null,"term":"GO:0070566"},{"annotations":[63072],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[63076],"is_not":false,"summary":null,"term":"GO:0016887"},{"annotations":[76087],"is_not":false,"summary":null,"term":"GO:0004792"},{"annotations":[76086],"is_not":false,"summary":null,"term":"GO:0042292"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB08730","InterPro:IPR036873","InterPro:IPR000594","GOA:B6K5C6","InterPro:IPR028885","InterPro:IPR035985","EnsemblGenomes-Gn:SJAG_03896","InterPro:IPR001763","UniProtKB/TrEMBL:B6K5C6"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"tgs1","uniquename":"SJAG_03901"},{"name":"taf1","uniquename":"SJAG_03900"},{"name":"atg22","uniquename":"SJAG_03899"},{"name":"rqh1","uniquename":"SJAG_03898"},{"name":"prh1","uniquename":"SJAG_03897"},{"name":"uba42","uniquename":"SJAG_03896"},{"uniquename":"SJAG_03895"},{"name":"smn1","uniquename":"SJAG_03894"},{"name":"ptc3","uniquename":"SJAG_03893"},{"name":"vps4","uniquename":"SJAG_03892"},{"name":"alx1","uniquename":"SJAG_03891"}],"genes_by_uniquename":{"HGNC:15765":null,"SJAG_03896":null,"SPAC2G11.10c":null,"YHR111W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"ThiF family","id":"PF00899","interpro_description":"THIF-type NAD/FAD binding fold","interpro_id":"IPR000594","interpro_name":"ThiF_NAD_FAD-bd","locations":[{"end":271,"start":30}],"match_end":271,"match_start":30,"name":"ThiF"},{"dbname":"PFAM","description":"Rhodanese-like domain","id":"PF00581","interpro_description":"Rhodanese-like domain","interpro_id":"IPR001763","interpro_name":"Rhodanese-like_dom","locations":[{"end":399,"start":311}],"match_end":399,"match_start":311,"name":"Rhodanese"},{"dbname":"CDD","description":"ThiF_MoeB_HesA_family","id":"cd00757","locations":[{"end":263,"start":29}],"match_end":263,"match_start":29,"name":"ThiF_MoeB_HesA_family"},{"dbname":"PROSITE_PROFILES","description":"Rhodanese domain profile.","id":"PS50206","interpro_description":"Rhodanese-like domain","interpro_id":"IPR001763","interpro_name":"Rhodanese-like_dom","locations":[{"end":406,"start":320}],"match_end":406,"match_start":320,"name":"RHODANESE_3"},{"dbname":"SMART","id":"SM00450","interpro_description":"Rhodanese-like domain","interpro_id":"IPR001763","interpro_name":"Rhodanese-like_dom","locations":[{"end":403,"start":310}],"match_end":403,"match_start":310,"name":"rhod_4"},{"dbname":"FUNFAM","description":"Adenylyltransferase and sulfurtransferase MOCS3","id":"G3DSA:3.40.50.720:FF:000033","locations":[{"end":278,"start":23}],"match_end":278,"match_start":23},{"dbname":"FUNFAM","description":"Adenylyltransferase and sulfurtransferase MOCS3","id":"G3DSA:3.40.250.10:FF:000014","locations":[{"end":408,"start":307}],"match_end":408,"match_start":307},{"dbname":"SUPERFAMILY","id":"SSF69572","interpro_description":"Ubiquitin-activating enzyme-like","interpro_id":"IPR035985","interpro_name":"Ubiquitin-activating_enz","locations":[{"end":374,"start":24}],"match_end":374,"match_start":24,"name":"Activating enzymes of the ubiquitin-like proteins"},{"dbname":"GENE3D","id":"G3DSA:3.40.250.10","interpro_description":"Rhodanese-like domain superfamily","interpro_id":"IPR036873","interpro_name":"Rhodanese-like_dom_sf","locations":[{"end":408,"start":307}],"match_end":408,"match_start":307},{"dbname":"GENE3D","id":"G3DSA:3.40.50.720","locations":[{"end":278,"start":24}],"match_end":278,"match_start":24},{"dbname":"PANTHER","id":"PTHR10953","interpro_description":"ThiF/MoeB/HesA family","interpro_id":"IPR045886","interpro_name":"ThiF/MoeB/HesA","locations":[{"end":290,"start":24}],"match_end":290,"match_start":24,"name":"UBIQUITIN-ACTIVATING ENZYME E1"},{"dbname":"HAMAP","description":"Adenylyltransferase and sulfurtransferase MOCS3 [MOCS3].","id":"MF_03049","interpro_description":"Adenylyltransferase and sulfurtransferase MOCS3/Uba4","interpro_id":"IPR028885","interpro_name":"MOCS3/Uba4","locations":[{"end":408,"start":6}],"match_end":408,"match_start":6,"name":"MOCS3_Uba4"}],"location":{"chromosome_name":"supercont5.2","end_pos":3533459,"start_pos":3532117,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":84,"start":71}},{"range":{"end":220,"start":209}}],"name":"uba42","ortholog_annotations":[{"gene_uniquename":"SJAG_03896","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:15765","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03896","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2G11.10c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03896","ortholog_taxonid":4932,"ortholog_uniquename":"YHR111W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03896","ortholog_taxonid":4932,"ortholog_uniquename":"YHR111W","reference_uniquename":"PMID:26896847"}],"product":"thiosulfate sulfurtransferase, URM1 activating enzyme E1-type Uba42","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null,"GO_REF:0000117":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524"],"not-binding":["GO:0004792","GO:0042292","GO:0070566","GO:0016887"]}},"subset_termids":["GO:0016874","GO:0016887","GO:0005829","GO:0016779","GO:0016782","GO:0005634","GO:0006399","GO:0070647","GO:0140096"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0002143":null,"GO:0004792":null,"GO:0005524":null,"GO:0005634":null,"GO:0005829":null,"GO:0016887":null,"GO:0032447":null,"GO:0034599":null,"GO:0042292":null,"GO:0070566":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03896.1"],"transcripts_by_uniquename":{"SJAG_03896.1":null},"uniprot_identifier":"B6K5C6","uniquename":"SJAG_03896"}


id: SJAG_03897
data:
  {"cv_annotations":{"biological_process":[{"annotations":[80422],"is_not":false,"summary":null,"term":"GO:0045943"},{"annotations":[97949],"is_not":false,"summary":null,"term":"GO:0042254"}],"cellular_component":[{"annotations":[80420],"is_not":false,"summary":null,"term":"GO:0005730"}],"molecular_function":[{"annotations":[69138],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[80423],"is_not":false,"summary":null,"term":"GO:0003725"},{"annotations":[97952],"is_not":false,"summary":null,"term":"GO:0003724"}]},"dbxrefs":["InterPro:IPR011709","InterPro:IPR027417","InterPro:IPR001650","UniProtKB/TrEMBL:B6K5C7","EnsemblGenomes-Gn:SJAG_03897","EnsemblGenomes-Tr:EEB08731","GOA:B6K5C7","InterPro:IPR014001","InterPro:IPR003593","InterPro:IPR002464","InterPro:IPR007502","InterPro:IPR011545"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":39,"start":1}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_03903"},{"name":"tgs1","uniquename":"SJAG_03901"},{"name":"taf1","uniquename":"SJAG_03900"},{"name":"atg22","uniquename":"SJAG_03899"},{"name":"rqh1","uniquename":"SJAG_03898"},{"name":"prh1","uniquename":"SJAG_03897"},{"name":"uba42","uniquename":"SJAG_03896"},{"uniquename":"SJAG_03895"},{"name":"smn1","uniquename":"SJAG_03894"},{"name":"ptc3","uniquename":"SJAG_03893"},{"name":"vps4","uniquename":"SJAG_03892"}],"genes_by_uniquename":{"HGNC:15861":null,"SJAG_03897":null,"SPAC2G11.11c":null,"YKL078W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Helicase associated domain (HA2), winged-helix","id":"PF04408","interpro_description":"Helicase associated domain (HA2), winged-helix domain","interpro_id":"IPR048333","interpro_name":"HA2_WH","locations":[{"end":500,"start":472}],"match_end":500,"match_start":472,"name":"HA2_N"},{"dbname":"PFAM","description":"DEAD/DEAH box helicase","id":"PF00270","interpro_description":"DEAD/DEAH-box helicase domain","interpro_id":"IPR011545","interpro_name":"DEAD/DEAH_box_helicase_dom","locations":[{"end":239,"start":92}],"match_end":239,"match_start":92,"name":"DEAD"},{"dbname":"PFAM","description":"Oligonucleotide/oligosaccharide-binding (OB)-fold","id":"PF07717","interpro_description":"DEAD-box helicase, OB fold","interpro_id":"IPR011709","interpro_name":"DEAD-box_helicase_OB_fold","locations":[{"end":698,"start":626}],"match_end":698,"match_start":626,"name":"OB_NTP_bind"},{"dbname":"PFAM","description":"Helicase conserved C-terminal domain","id":"PF00271","interpro_description":"Helicase, C-terminal domain-like","interpro_id":"IPR001650","interpro_name":"Helicase_C-like","locations":[{"end":409,"start":283}],"match_end":409,"match_start":283,"name":"Helicase_C"},{"dbname":"PFAM","description":"Helicase associated domain (HA2), ratchet-like","id":"PF21010","locations":[{"end":559,"start":502}],"match_end":559,"match_start":502,"name":"HA2_C"},{"dbname":"CDD","description":"SF2_C_RHA","id":"cd18791","locations":[{"end":419,"start":258}],"match_end":419,"match_start":258,"name":"SF2_C_RHA"},{"dbname":"PROSITE_PATTERNS","description":"DEAH-box subfamily ATP-dependent helicases signature.","id":"PS00690","interpro_description":"DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site","interpro_id":"IPR002464","interpro_name":"DNA/RNA_helicase_DEAH_CS","locations":[{"end":205,"start":196}],"match_end":205,"match_start":196,"name":"DEAH_ATP_HELICASE"},{"dbname":"PROSITE_PROFILES","description":"Superfamilies 1 and 2 helicase C-terminal domain profile.","id":"PS51194","interpro_description":"Helicase, C-terminal domain-like","interpro_id":"IPR001650","interpro_name":"Helicase_C-like","locations":[{"end":451,"start":279}],"match_end":451,"match_start":279,"name":"HELICASE_CTER"},{"dbname":"PROSITE_PROFILES","description":"Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.","id":"PS51192","interpro_description":"Helicase superfamily 1/2, ATP-binding domain","interpro_id":"IPR014001","interpro_name":"Helicase_ATP-bd","locations":[{"end":254,"start":91}],"match_end":254,"match_start":91,"name":"HELICASE_ATP_BIND_1"},{"dbname":"SMART","id":"SM00382","interpro_description":"AAA+ ATPase domain","interpro_id":"IPR003593","interpro_name":"AAA+_ATPase","locations":[{"end":291,"start":96}],"match_end":291,"match_start":96,"name":"AAA_5"},{"dbname":"SMART","id":"SM00490","interpro_description":"Helicase, C-terminal domain-like","interpro_id":"IPR001650","interpro_name":"Helicase_C-like","locations":[{"end":411,"start":303}],"match_end":411,"match_start":303,"name":"helicmild6"},{"dbname":"SMART","id":"SM00487","interpro_description":"Helicase superfamily 1/2, ATP-binding domain","interpro_id":"IPR014001","interpro_name":"Helicase_ATP-bd","locations":[{"end":263,"start":79}],"match_end":263,"match_start":79,"name":"ultradead3"},{"dbname":"SMART","id":"SM00847","interpro_description":"Helicase-associated domain","interpro_id":"IPR007502","interpro_name":"Helicase-assoc_dom","locations":[{"end":561,"start":471}],"match_end":561,"match_start":471,"name":"ha2_5"},{"dbname":"FUNFAM","description":"pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7","id":"G3DSA:3.40.50.300:FF:000615","locations":[{"end":256,"start":28}],"match_end":256,"match_start":28},{"dbname":"FUNFAM","description":"probable ATP-dependent RNA helicase DHX40","id":"G3DSA:3.40.50.300:FF:000145","locations":[{"end":431,"start":257}],"match_end":431,"match_start":257},{"dbname":"SUPERFAMILY","id":"SSF52540","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":587,"start":76}],"match_end":587,"match_start":76,"name":"P-loop containing nucleoside triphosphate hydrolases"},{"dbname":"GENE3D","id":"G3DSA:1.20.120.1080","locations":[{"end":555,"start":454}],"match_end":555,"match_start":454},{"dbname":"GENE3D","id":"G3DSA:3.40.50.300","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":431,"start":26}],"match_end":431,"match_start":26},{"dbname":"PANTHER","id":"PTHR18934","locations":[{"end":691,"start":52}],"match_end":691,"match_start":52,"name":"ATP-DEPENDENT RNA HELICASE"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":39,"start":1}],"match_end":39,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Positive-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Positive-Polyelectrolyte","locations":[{"end":31,"start":20}],"match_end":31,"match_start":20,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3531684,"start_pos":3529570,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":146,"start":134}},{"range":{"end":408,"start":395}}],"name":"prh1","ortholog_annotations":[{"gene_uniquename":"SJAG_03897","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:15861","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03897","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2G11.11c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03897","ortholog_taxonid":4932,"ortholog_uniquename":"YKL078W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03897","ortholog_taxonid":4932,"ortholog_uniquename":"YKL078W","reference_uniquename":"PMID:26896847"}],"product":"ATP-dependent RNA helicase Prh1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524","GO:0003725"],"not-binding":["GO:0003724"]}},"subset_termids":["GO:0042254","GO:0140098","GO:0006355","GO:0006351","GO:0005634","GO:0016853","GO:0005730"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0003724":null,"GO:0003725":null,"GO:0005524":null,"GO:0005730":null,"GO:0042254":null,"GO:0045943":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03897.1"],"transcripts_by_uniquename":{"SJAG_03897.1":null},"uniprot_identifier":"B6K5C7","uniquename":"SJAG_03897"}


id: SJAG_03898
data:
  {"coiled_coil_coords":[{"range":{"end":246,"start":219}},{"range":{"end":846,"start":826}},{"range":{"end":1096,"start":1076}}],"cv_annotations":{"biological_process":[{"annotations":[97960],"is_not":false,"summary":null,"term":"GO:0000729"},{"annotations":[79984],"is_not":false,"summary":null,"term":"GO:0000724"},{"annotations":[97962],"is_not":false,"summary":null,"term":"GO:0043007"},{"annotations":[97963],"is_not":false,"summary":null,"term":"GO:0031573"},{"annotations":[97964],"is_not":false,"summary":null,"term":"GO:1990426"},{"annotations":[97965],"is_not":false,"summary":null,"term":"GO:0006301"},{"annotations":[97968],"is_not":false,"summary":null,"term":"GO:0071140"},{"annotations":[97969],"is_not":false,"summary":null,"term":"GO:0070914"}],"cellular_component":[{"annotations":[79987],"is_not":false,"summary":null,"term":"GO:0005737"},{"annotations":[97955],"is_not":false,"summary":null,"term":"GO:0043596"},{"annotations":[97956],"is_not":false,"summary":null,"term":"GO:0005730"},{"annotations":[97957],"is_not":false,"summary":null,"term":"GO:0031422"},{"annotations":[97958],"is_not":false,"summary":null,"term":"GO:0035861"}],"molecular_function":[{"annotations":[79985],"is_not":false,"summary":null,"term":"GO:0043138"},{"annotations":[68489],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[97972],"is_not":false,"summary":null,"term":"GO:0003677"},{"annotations":[79988],"is_not":false,"summary":null,"term":"GO:0009378"}],"mondo":[{"annotations":[88931],"is_not":false,"summary":null,"term":"MONDO:0008876"},{"annotations":[88771],"is_not":false,"summary":null,"term":"MONDO:0010196"}]},"dbxrefs":["InterPro:IPR014001","InterPro:IPR002464","InterPro:IPR001650","InterPro:IPR011545","EnsemblGenomes-Tr:EEB08732","InterPro:IPR002121","InterPro:IPR036388","InterPro:IPR027417","UniProtKB/TrEMBL:B6K5C8","EnsemblGenomes-Gn:SJAG_03898","InterPro:IPR010997","InterPro:IPR004589","InterPro:IPR032284","GOA:B6K5C8","InterPro:IPR018982"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":443,"start":414}},{"range":{"end":1283,"start":1218}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"ani1","uniquename":"SJAG_03905"},{"uniquename":"SJAG_03903"},{"name":"tgs1","uniquename":"SJAG_03901"},{"name":"taf1","uniquename":"SJAG_03900"},{"name":"atg22","uniquename":"SJAG_03899"},{"name":"rqh1","uniquename":"SJAG_03898"},{"name":"prh1","uniquename":"SJAG_03897"},{"name":"uba42","uniquename":"SJAG_03896"},{"uniquename":"SJAG_03895"},{"name":"smn1","uniquename":"SJAG_03894"},{"name":"ptc3","uniquename":"SJAG_03893"}],"genes_by_uniquename":{"HGNC:1058":null,"HGNC:12791":null,"SJAG_03898":null,"SPAC2G11.12":null,"YMR190C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"DEAD/DEAH box helicase","id":"PF00270","interpro_description":"DEAD/DEAH-box helicase domain","interpro_id":"IPR011545","interpro_name":"DEAD/DEAH_box_helicase_dom","locations":[{"end":653,"start":482}],"match_end":653,"match_start":482,"name":"DEAD"},{"dbname":"PFAM","description":"HRDC domain","id":"PF00570","interpro_description":"HRDC domain","interpro_id":"IPR002121","interpro_name":"HRDC_dom","locations":[{"end":1143,"start":1077}],"match_end":1143,"match_start":1077,"name":"HRDC"},{"dbname":"PFAM","description":"Helicase conserved C-terminal domain","id":"PF00271","interpro_description":"Helicase, C-terminal domain-like","interpro_id":"IPR001650","interpro_name":"Helicase_C-like","locations":[{"end":798,"start":700}],"match_end":798,"match_start":700,"name":"Helicase_C"},{"dbname":"PFAM","description":"RecQ zinc-binding","id":"PF16124","interpro_description":"ATP-dependent DNA helicase RecQ, zinc-binding domain","interpro_id":"IPR032284","interpro_name":"RecQ_Zn-bd","locations":[{"end":875,"start":809}],"match_end":875,"match_start":809,"name":"RecQ_Zn_bind"},{"dbname":"PFAM","description":"RQC domain","id":"PF09382","interpro_description":"RQC domain","interpro_id":"IPR018982","interpro_name":"RQC_domain","locations":[{"end":997,"start":881}],"match_end":997,"match_start":881,"name":"RQC"},{"dbname":"CDD","description":"DEXHc_RecQ","id":"cd17920","locations":[{"end":674,"start":469}],"match_end":674,"match_start":469,"name":"DEXHc_RecQ"},{"dbname":"CDD","description":"SF2_C_RecQ","id":"cd18794","locations":[{"end":807,"start":675}],"match_end":807,"match_start":675,"name":"SF2_C_RecQ"},{"dbname":"PROSITE_PATTERNS","description":"DEAH-box subfamily ATP-dependent helicases signature.","id":"PS00690","interpro_description":"DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site","interpro_id":"IPR002464","interpro_name":"DNA/RNA_helicase_DEAH_CS","locations":[{"end":615,"start":606}],"match_end":615,"match_start":606,"name":"DEAH_ATP_HELICASE"},{"dbname":"PROSITE_PROFILES","description":"HRDC domain profile.","id":"PS50967","interpro_description":"HRDC domain","interpro_id":"IPR002121","interpro_name":"HRDC_dom","locations":[{"end":1153,"start":1073}],"match_end":1153,"match_start":1073,"name":"HRDC"},{"dbname":"PROSITE_PROFILES","description":"Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.","id":"PS51192","interpro_description":"Helicase superfamily 1/2, ATP-binding domain","interpro_id":"IPR014001","interpro_name":"Helicase_ATP-bd","locations":[{"end":667,"start":488}],"match_end":667,"match_start":488,"name":"HELICASE_ATP_BIND_1"},{"dbname":"PROSITE_PROFILES","description":"Superfamilies 1 and 2 helicase C-terminal domain profile.","id":"PS51194","interpro_description":"Helicase, C-terminal domain-like","interpro_id":"IPR001650","interpro_name":"Helicase_C-like","locations":[{"end":840,"start":691}],"match_end":840,"match_start":691,"name":"HELICASE_CTER"},{"dbname":"SMART","id":"SM00487","interpro_description":"Helicase superfamily 1/2, ATP-binding domain","interpro_id":"IPR014001","interpro_name":"Helicase_ATP-bd","locations":[{"end":683,"start":476}],"match_end":683,"match_start":476,"name":"ultradead3"},{"dbname":"SMART","id":"SM00341","interpro_description":"HRDC domain","interpro_id":"IPR002121","interpro_name":"HRDC_dom","locations":[{"end":1153,"start":1073}],"match_end":1153,"match_start":1073,"name":"hrdc7"},{"dbname":"SMART","id":"SM00956","interpro_description":"RQC domain","interpro_id":"IPR018982","interpro_name":"RQC_domain","locations":[{"end":995,"start":884}],"match_end":995,"match_start":884,"name":"RQC_2"},{"dbname":"SMART","id":"SM00490","interpro_description":"Helicase, C-terminal domain-like","interpro_id":"IPR001650","interpro_name":"Helicase_C-like","locations":[{"end":798,"start":716}],"match_end":798,"match_start":716,"name":"helicmild6"},{"dbname":"FUNFAM","description":"Bloom syndrome RecQ-like helicase","id":"G3DSA:3.40.50.300:FF:000537","locations":[{"end":674,"start":453}],"match_end":674,"match_start":453},{"dbname":"FUNFAM","description":"Bloom syndrome, RecQ helicase","id":"G3DSA:3.40.50.300:FF:000340","locations":[{"end":879,"start":675}],"match_end":879,"match_start":675},{"dbname":"SUPERFAMILY","id":"SSF52540","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":630,"start":451},{"end":927,"start":673}],"match_end":927,"match_start":451,"name":"P-loop containing nucleoside triphosphate hydrolases"},{"dbname":"SUPERFAMILY","id":"SSF47819","interpro_description":"HRDC-like superfamily","interpro_id":"IPR010997","interpro_name":"HRDC-like_sf","locations":[{"end":1154,"start":1078}],"match_end":1154,"match_start":1078,"name":"HRDC-like"},{"dbname":"GENE3D","id":"G3DSA:1.10.150.80","interpro_description":"HRDC domain superfamily","interpro_id":"IPR044876","interpro_name":"HRDC_dom_sf","locations":[{"end":1157,"start":1071}],"match_end":1157,"match_start":1071,"name":"HRDC domain"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.300","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":877,"start":442}],"match_end":877,"match_start":442},{"dbname":"GENE3D","id":"G3DSA:1.10.10.10","interpro_description":"Winged helix-like DNA-binding domain superfamily","interpro_id":"IPR036388","interpro_name":"WH-like_DNA-bd_sf","locations":[{"end":995,"start":882}],"match_end":995,"match_start":882},{"dbname":"PANTHER","id":"PTHR13710","locations":[{"end":1184,"start":459}],"match_end":1184,"match_start":459,"name":"DNA HELICASE RECQ FAMILY MEMBER"},{"dbname":"COILS","id":"Coil","locations":[{"end":246,"start":219},{"end":846,"start":826},{"end":1096,"start":1076}],"match_end":1096,"match_start":219,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":443,"start":414},{"end":1283,"start":1218}],"match_end":1283,"match_start":414,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":1237,"start":1224}],"match_end":1237,"match_start":1224,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":437,"start":414}],"match_end":437,"match_start":414,"name":"disorder_prediction"},{"dbname":"MOBIDB-Positive-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Positive-Polyelectrolyte","locations":[{"end":1252,"start":1238}],"match_end":1252,"match_start":1238,"name":"disorder_prediction"},{"dbname":"NCBIFAM","description":"RecQ family ATP-dependent DNA helicase","id":"TIGR00614","interpro_description":"DNA helicase, ATP-dependent, RecQ type","interpro_id":"IPR004589","interpro_name":"DNA_helicase_ATP-dep_RecQ","locations":[{"end":928,"start":470}],"match_end":928,"match_start":470,"name":"recQ_fam"}],"location":{"chromosome_name":"supercont5.2","end_pos":3529071,"start_pos":3524944,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":135,"start":123}},{"range":{"end":405,"start":382}},{"range":{"end":1268,"start":1223}}],"name":"rqh1","ortholog_annotations":[{"gene_uniquename":"SJAG_03898","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:1058","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03898","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:12791","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03898","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2G11.12","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03898","ortholog_taxonid":4932,"ortholog_uniquename":"YMR190C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03898","ortholog_taxonid":4932,"ortholog_uniquename":"YMR190C","reference_uniquename":"PMID:26896847"}],"product":"RecQ type DNA helicase Rqh1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524","GO:0003677"],"not-binding":["GO:0043138","GO:0009378"]}},"subset_termids":["GO:0006281","MONDO:0005093","MONDO:0005570","GO:0005634","GO:0005694","GO:0006310","GO:0023052","MONDO:0006025","GO:0005730","GO:0016853","GO:0006260","GO:0140097","MONDO:0019303"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000724":null,"GO:0000729":null,"GO:0003677":null,"GO:0005524":null,"GO:0005730":null,"GO:0005737":null,"GO:0006301":null,"GO:0009378":null,"GO:0031422":null,"GO:0031573":null,"GO:0035861":null,"GO:0043007":null,"GO:0043138":null,"GO:0043596":null,"GO:0070914":null,"GO:0071140":null,"GO:1990426":null,"MONDO:0008876":null,"MONDO:0010196":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03898.1"],"transcripts_by_uniquename":{"SJAG_03898.1":null},"uniprot_identifier":"B6K5C8","uniquename":"SJAG_03898"}


id: SJAG_03899
data:
  {"cv_annotations":{"biological_process":[{"annotations":[78953],"is_not":false,"summary":null,"term":"GO:0032974"},{"annotations":[97976],"is_not":false,"summary":null,"term":"GO:1902475"}],"cellular_component":[{"annotations":[97974],"is_not":false,"summary":null,"term":"GO:0000329"}],"molecular_function":[{"annotations":[97977],"is_not":false,"summary":null,"term":"GO:0034639"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_03899","EnsemblGenomes-Tr:EEB08733","InterPro:IPR036259","GOA:B6K5C9","UniProtKB/TrEMBL:B6K5C9","InterPro:IPR024671"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rev1","uniquename":"SJAG_03906"},{"name":"ani1","uniquename":"SJAG_03905"},{"uniquename":"SJAG_03903"},{"name":"tgs1","uniquename":"SJAG_03901"},{"name":"taf1","uniquename":"SJAG_03900"},{"name":"atg22","uniquename":"SJAG_03899"},{"name":"rqh1","uniquename":"SJAG_03898"},{"name":"prh1","uniquename":"SJAG_03897"},{"name":"uba42","uniquename":"SJAG_03896"},{"uniquename":"SJAG_03895"},{"name":"smn1","uniquename":"SJAG_03894"}],"genes_by_uniquename":{"SJAG_03899":null,"SPAC2G11.13":null,"YCL038C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Vacuole effluxer Atg22 like","id":"PF11700","interpro_description":"Autophagy-related protein 22-like","interpro_id":"IPR024671","interpro_name":"Atg22-like","locations":[{"end":524,"start":21}],"match_end":524,"match_start":21,"name":"ATG22"},{"dbname":"SUPERFAMILY","id":"SSF103473","interpro_description":"MFS transporter superfamily","interpro_id":"IPR036259","interpro_name":"MFS_trans_sf","locations":[{"end":525,"start":242}],"match_end":525,"match_start":242,"name":"MFS general substrate transporter"},{"dbname":"GENE3D","id":"G3DSA:1.20.1250.20","interpro_description":"MFS transporter superfamily","interpro_id":"IPR036259","interpro_name":"MFS_trans_sf","locations":[{"end":522,"start":231}],"match_end":522,"match_start":231,"name":"MFS general substrate transporter like domains"},{"dbname":"PANTHER","id":"PTHR23519","interpro_description":"Autophagy-related 22 and Lipoteichoic acid anchor flippase","interpro_id":"IPR050495","interpro_name":"ATG22/LtaA_families","locations":[{"end":526,"start":17}],"match_end":526,"match_start":17,"name":"AUTOPHAGY-RELATED PROTEIN 22"}],"location":{"chromosome_name":"supercont5.2","end_pos":3523718,"start_pos":3522129,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":209,"start":197}},{"range":{"end":298,"start":287}},{"range":{"end":521,"start":505}}],"name":"atg22","ortholog_annotations":[{"gene_uniquename":"SJAG_03899","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2G11.13","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03899","ortholog_taxonid":4932,"ortholog_uniquename":"YCL038C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03899","ortholog_taxonid":4932,"ortholog_uniquename":"YCL038C","reference_uniquename":"PMID:26896847"}],"product":"vacuolar amino acid transmembrane transporter Atg22","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0034639"]}},"subset_termids":["GO:0022857","GO:0005773","GO:0055085"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000329":null,"GO:0032974":null,"GO:0034639":null,"GO:1902475":null},"tm_domain_coords":[{"assigned_by":"TMHMM","range":{"end":115,"start":93}},{"assigned_by":"TMHMM","range":{"end":147,"start":125}},{"assigned_by":"TMHMM","range":{"end":266,"start":244}},{"assigned_by":"TMHMM","range":{"end":299,"start":281}},{"assigned_by":"TMHMM","range":{"end":359,"start":337}},{"assigned_by":"TMHMM","range":{"end":391,"start":369}},{"assigned_by":"TMHMM","range":{"end":420,"start":398}},{"assigned_by":"TMHMM","range":{"end":452,"start":430}},{"assigned_by":"TMHMM","range":{"end":494,"start":472}},{"assigned_by":"TMHMM","range":{"end":523,"start":504}}],"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03899.1"],"transcripts_by_uniquename":{"SJAG_03899.1":null},"uniprot_identifier":"B6K5C9","uniquename":"SJAG_03899"}


id: SJAG_03900
data:
  {"coiled_coil_coords":[{"range":{"end":193,"start":169}},{"range":{"end":943,"start":916}}],"cv_annotations":{"biological_process":[{"annotations":[66723],"is_not":false,"summary":null,"term":"GO:0006338"},{"annotations":[78728],"is_not":false,"summary":null,"term":"GO:0051123"}],"cellular_component":[{"annotations":[78726],"is_not":false,"summary":null,"term":"GO:0005669"}],"molecular_function":[{"annotations":[66719],"is_not":false,"summary":null,"term":"GO:0004402"},{"annotations":[78727],"is_not":false,"summary":null,"term":"GO:0016251"},{"annotations":[78725],"is_not":false,"summary":null,"term":"GO:0017025"}],"mondo":[{"annotations":[87229],"is_not":false,"summary":null,"term":"MONDO:0010500"},{"annotations":[87761],"is_not":false,"summary":null,"term":"MONDO:0010747"}]},"dbxrefs":["InterPro:IPR040240","InterPro:IPR041670","GOA:B6K5D0","EnsemblGenomes-Tr:EEB08734","InterPro:IPR022591","UniProtKB/TrEMBL:B6K5D0","EnsemblGenomes-Gn:SJAG_03900"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":131,"start":59}},{"range":{"end":190,"start":164}},{"range":{"end":859,"start":840}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"sec13","uniquename":"SJAG_03907"},{"name":"rev1","uniquename":"SJAG_03906"},{"name":"ani1","uniquename":"SJAG_03905"},{"uniquename":"SJAG_03903"},{"name":"tgs1","uniquename":"SJAG_03901"},{"name":"taf1","uniquename":"SJAG_03900"},{"name":"atg22","uniquename":"SJAG_03899"},{"name":"rqh1","uniquename":"SJAG_03898"},{"name":"prh1","uniquename":"SJAG_03897"},{"name":"uba42","uniquename":"SJAG_03896"},{"uniquename":"SJAG_03895"}],"genes_by_uniquename":{"HGNC:11535":null,"HGNC:18056":null,"SJAG_03900":null,"SPAC2G11.14":null,"YGR274C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Protein of unknown function (DUF3591)","id":"PF12157","interpro_description":"Transcription initiation factor TFIID subunit 1, histone acetyltransferase domain","interpro_id":"IPR022591","interpro_name":"TAF1_HAT_dom","locations":[{"end":824,"start":378}],"match_end":824,"match_start":378,"name":"DUF3591"},{"dbname":"PFAM","description":"Zinc knuckle","id":"PF15288","interpro_description":"Zinc knuckle","interpro_id":"IPR041670","interpro_name":"Znf-CCHC_6","locations":[{"end":981,"start":962}],"match_end":981,"match_start":962,"name":"zf-CCHC_6"},{"dbname":"PANTHER","id":"PTHR13900","interpro_description":"Transcription initiation factor TFIID subunit 1","interpro_id":"IPR040240","interpro_name":"TAF1","locations":[{"end":791,"start":294}],"match_end":791,"match_start":294,"name":"TRANSCRIPTION INITIATION FACTOR TFIID"},{"dbname":"COILS","id":"Coil","locations":[{"end":193,"start":169},{"end":943,"start":916}],"match_end":943,"match_start":169,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":131,"start":59},{"end":190,"start":164},{"end":859,"start":840}],"match_end":859,"match_start":59,"name":"disorder_prediction"},{"dbname":"MOBIDB-Negative-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Negative-Polyelectrolyte","locations":[{"end":121,"start":105},{"end":183,"start":169}],"match_end":183,"match_start":105,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":91,"start":79}],"match_end":91,"match_start":79,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":78,"start":69},{"end":131,"start":122}],"match_end":131,"match_start":69,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3521622,"start_pos":3518539,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":13,"start":3}},{"range":{"end":189,"start":168}},{"range":{"end":229,"start":216}}],"name":"taf1","ortholog_annotations":[{"gene_uniquename":"SJAG_03900","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:11535","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03900","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:18056","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03900","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2G11.14","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03900","ortholog_taxonid":4932,"ortholog_uniquename":"YGR274C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03900","ortholog_taxonid":4932,"ortholog_uniquename":"YGR274C","reference_uniquename":"PMID:26896847"}],"product":"transcription factor TFIID complex, histone acetyltransferase subunit Taf111","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000108":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0017025"],"not-binding":["GO:0004402","GO:0016251"]}},"subset_termids":["GO:0005654","MONDO:0003441","GO:0005634","GO:0140223","GO:0140096","GO:0006351","GO:0065003","GO:0034212","GO:0016746","GO:0006325"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004402":null,"GO:0005669":null,"GO:0006338":null,"GO:0016251":null,"GO:0017025":null,"GO:0051123":null,"MONDO:0010500":null,"MONDO:0010747":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03900.1"],"transcripts_by_uniquename":{"SJAG_03900.1":null},"uniprot_identifier":"B6K5D0","uniquename":"SJAG_03900"}


id: SJAG_03901
data:
  {"cv_annotations":{"biological_process":[{"annotations":[76902],"is_not":false,"summary":null,"term":"GO:0036261"}],"cellular_component":[{"annotations":[97984],"is_not":false,"summary":null,"term":"GO:0015030"},{"annotations":[97986],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[97987],"is_not":false,"summary":null,"term":"GO:0072686"},{"annotations":[97988],"is_not":false,"summary":null,"term":"GO:0005730"}],"molecular_function":[{"annotations":[76900],"is_not":false,"summary":null,"term":"GO:0071164"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB08735","UniProtKB/TrEMBL:B6K5D1","EnsemblGenomes-Gn:SJAG_03901","GOA:B6K5D1","InterPro:IPR019012","InterPro:IPR029063"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"lcf2","uniquename":"SJAG_03909"},{"name":"sec13","uniquename":"SJAG_03907"},{"name":"rev1","uniquename":"SJAG_03906"},{"name":"ani1","uniquename":"SJAG_03905"},{"uniquename":"SJAG_03903"},{"name":"tgs1","uniquename":"SJAG_03901"},{"name":"taf1","uniquename":"SJAG_03900"},{"name":"atg22","uniquename":"SJAG_03899"},{"name":"rqh1","uniquename":"SJAG_03898"},{"name":"prh1","uniquename":"SJAG_03897"},{"name":"uba42","uniquename":"SJAG_03896"}],"genes_by_uniquename":{"HGNC:17843":null,"SJAG_03901":null,"SPAC2G11.15c":null,"YPL157W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"RNA cap guanine-N2 methyltransferase","id":"PF09445","interpro_description":"RNA cap guanine-N2 methyltransferase","interpro_id":"IPR019012","interpro_name":"RNA_cap_Gua-N2-MeTrfase","locations":[{"end":245,"start":89}],"match_end":245,"match_start":89,"name":"Methyltransf_15"},{"dbname":"CDD","description":"AdoMet_MTases","id":"cd02440","locations":[{"end":146,"start":90}],"match_end":146,"match_start":90,"name":"AdoMet_MTases"},{"dbname":"SUPERFAMILY","id":"SSF53335","interpro_description":"S-adenosyl-L-methionine-dependent methyltransferase superfamily","interpro_id":"IPR029063","interpro_name":"SAM-dependent_MTases_sf","locations":[{"end":227,"start":31}],"match_end":227,"match_start":31,"name":"S-adenosyl-L-methionine-dependent methyltransferases"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.150","interpro_description":"S-adenosyl-L-methionine-dependent methyltransferase superfamily","interpro_id":"IPR029063","interpro_name":"SAM-dependent_MTases_sf","locations":[{"end":248,"start":33}],"match_end":248,"match_start":33,"name":"Vaccinia Virus protein VP39"},{"dbname":"PANTHER","id":"PTHR14741","locations":[{"end":246,"start":26}],"match_end":246,"match_start":26,"name":"S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED"}],"location":{"chromosome_name":"supercont5.2","end_pos":3518285,"start_pos":3517342,"strand":"forward"},"name":"tgs1","ortholog_annotations":[{"gene_uniquename":"SJAG_03901","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:17843","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03901","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2G11.15c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03901","ortholog_taxonid":4932,"ortholog_uniquename":"YPL157W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03901","ortholog_taxonid":4932,"ortholog_uniquename":"YPL157W","reference_uniquename":"PMID:26896847"}],"product":"snRNA and snoRNA trimethylguanosine synthase Tgs1","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0071164"]}},"subset_termids":["GO:0005654","GO:0005634","GO:0016741","GO:0140098","GO:0072686","GO:0015630","GO:0005730","GO:0005829"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005730":null,"GO:0005829":null,"GO:0015030":null,"GO:0036261":null,"GO:0071164":null,"GO:0072686":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03901.1"],"transcripts_by_uniquename":{"SJAG_03901.1":null},"uniprot_identifier":"B6K5D1","uniquename":"SJAG_03901"}


id: SJAG_03903
data:
  {"cv_annotations":{"biological_process":[{"annotations":[111376],"is_not":false,"summary":null,"term":"GO:0061621"},{"annotations":[110912],"is_not":false,"summary":null,"term":"GO:0034599"},{"annotations":[110919],"is_not":false,"summary":null,"term":"GO:1900745"}],"cellular_component":[{"annotations":[111369],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[110891],"is_not":false,"summary":null,"term":"GO:0009277"},{"annotations":[110898],"is_not":false,"summary":null,"term":"GO:1990315"}],"molecular_function":[{"annotations":[111383],"is_not":false,"summary":null,"term":"GO:0004365"},{"annotations":[111390],"is_not":false,"summary":null,"term":"GO:0051287"},{"annotations":[111397],"is_not":false,"summary":null,"term":"GO:0050661"},{"annotations":[110947],"is_not":false,"summary":null,"term":"GO:0019826"}]},"dbxrefs":["InterPro:IPR006424","InterPro:IPR020831","UniProtKB/TrEMBL:B6JUV6","InterPro:IPR020830","InterPro:IPR020829","GOA:B6JUV6","EnsemblGenomes-Tr:EEB08736","EnsemblGenomes-Gn:SJAG_03903","InterPro:IPR020828","InterPro:IPR036291"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":207,"start":185}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rbd3","uniquename":"SJAG_03910"},{"name":"lcf2","uniquename":"SJAG_03909"},{"name":"sec13","uniquename":"SJAG_03907"},{"name":"rev1","uniquename":"SJAG_03906"},{"name":"ani1","uniquename":"SJAG_03905"},{"uniquename":"SJAG_03903"},{"name":"tgs1","uniquename":"SJAG_03901"},{"name":"taf1","uniquename":"SJAG_03900"},{"name":"atg22","uniquename":"SJAG_03899"},{"name":"rqh1","uniquename":"SJAG_03898"},{"name":"prh1","uniquename":"SJAG_03897"}],"genes_by_uniquename":{"HGNC:24864":null,"HGNC:4141":null,"SJAG_03903":null,"SPBC32F12.11":null,"SPBC354.12":null,"YGR192C":null,"YJL052W":null,"YJR009C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain","id":"PF00044","interpro_description":"Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain","interpro_id":"IPR020828","interpro_name":"GlycerAld_3-P_DH_NAD(P)-bd","locations":[{"end":105,"start":5}],"match_end":105,"match_start":5,"name":"Gp_dh_N"},{"dbname":"PFAM","description":"Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain","id":"PF02800","interpro_description":"Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain","interpro_id":"IPR020829","interpro_name":"GlycerAld_3-P_DH_cat","locations":[{"end":314,"start":157}],"match_end":314,"match_start":157,"name":"Gp_dh_C"},{"dbname":"CDD","description":"GAPDH_I_C","id":"cd18126","locations":[{"end":317,"start":152}],"match_end":317,"match_start":152,"name":"GAPDH_I_C"},{"dbname":"CDD","description":"GAPDH_I_N","id":"cd05214","locations":[{"end":151,"start":5}],"match_end":151,"match_start":5,"name":"GAPDH_I_N"},{"dbname":"PROSITE_PATTERNS","description":"Glyceraldehyde 3-phosphate dehydrogenase active site.","id":"PS00071","interpro_description":"Glyceraldehyde 3-phosphate dehydrogenase, active site","interpro_id":"IPR020830","interpro_name":"GlycerAld_3-P_DH_AS","locations":[{"end":157,"start":150}],"match_end":157,"match_start":150,"name":"GAPDH"},{"dbname":"SMART","id":"SM00846","interpro_description":"Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain","interpro_id":"IPR020828","interpro_name":"GlycerAld_3-P_DH_NAD(P)-bd","locations":[{"end":152,"start":4}],"match_end":152,"match_start":4,"name":"gp_dh_n_7"},{"dbname":"PRINTS","description":"Glyceraldehyde-3-phosphate dehydrogenase signature","id":"PR00078","interpro_description":"Glyceraldehyde/Erythrose phosphate dehydrogenase family","interpro_id":"IPR020831","interpro_name":"GlycerAld/Erythrose_P_DH","locations":[{"end":124,"start":111},{"end":164,"start":146},{"end":189,"start":173},{"end":247,"start":230},{"end":285,"start":270}],"match_end":285,"match_start":111,"name":"G3PDHDRGNASE"},{"dbname":"FUNFAM","description":"Glyceraldehyde-3-phosphate dehydrogenase","id":"G3DSA:3.40.50.720:FF:000266","locations":[{"end":162,"start":4}],"match_end":162,"match_start":4},{"dbname":"FUNFAM","description":"Glyceraldehyde-3-phosphate dehydrogenase","id":"G3DSA:3.30.360.10:FF:000001","locations":[{"end":316,"start":151}],"match_end":316,"match_start":151},{"dbname":"SUPERFAMILY","id":"SSF51735","interpro_description":"NAD(P)-binding domain superfamily","interpro_id":"IPR036291","interpro_name":"NAD(P)-bd_dom_sf","locations":[{"end":172,"start":5}],"match_end":172,"match_start":5,"name":"NAD(P)-binding Rossmann-fold domains"},{"dbname":"SUPERFAMILY","id":"SSF55347","locations":[{"end":314,"start":151}],"match_end":314,"match_start":151,"name":"Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain"},{"dbname":"GENE3D","id":"G3DSA:3.30.360.10","locations":[{"end":316,"start":150}],"match_end":316,"match_start":150,"name":"Dihydrodipicolinate Reductase; domain 2"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.720","locations":[{"end":149,"start":5},{"end":329,"start":317}],"match_end":329,"match_start":5},{"dbname":"PANTHER","id":"PTHR10836","interpro_description":"Glyceraldehyde/Erythrose phosphate dehydrogenase family","interpro_id":"IPR020831","interpro_name":"GlycerAld/Erythrose_P_DH","locations":[{"end":332,"start":5}],"match_end":332,"match_start":5,"name":"GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE"},{"dbname":"PIRSF","id":"PIRSF000149","interpro_description":"Glyceraldehyde/Erythrose phosphate dehydrogenase family","interpro_id":"IPR020831","interpro_name":"GlycerAld/Erythrose_P_DH","locations":[{"end":336,"start":2}],"match_end":336,"match_start":2,"name":"GAPDH"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":207,"start":185}],"match_end":207,"match_start":185,"name":"disorder_prediction"},{"dbname":"NCBIFAM","description":"glyceraldehyde-3-phosphate dehydrogenase, type I","id":"TIGR01534","interpro_description":"Glyceraldehyde-3-phosphate dehydrogenase, type I","interpro_id":"IPR006424","interpro_name":"Glyceraldehyde-3-P_DH_1","locations":[{"end":326,"start":5}],"match_end":326,"match_start":5,"name":"GAPDH-I"}],"location":{"chromosome_name":"supercont5.2","end_pos":3514708,"start_pos":3513698,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":187,"start":175}}],"ortholog_annotations":[{"gene_uniquename":"SJAG_03903","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:24864","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03903","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:24864","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03903","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:4141","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03903","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:4141","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03903","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC32F12.11","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03903","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC354.12","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03903","ortholog_taxonid":4932,"ortholog_uniquename":"YGR192C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03903","ortholog_taxonid":4932,"ortholog_uniquename":"YGR192C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03903","ortholog_taxonid":4932,"ortholog_uniquename":"YGR192C","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03903","ortholog_taxonid":4932,"ortholog_uniquename":"YJL052W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03903","ortholog_taxonid":4932,"ortholog_uniquename":"YJL052W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03903","ortholog_taxonid":4932,"ortholog_uniquename":"YJL052W","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03903","ortholog_taxonid":4932,"ortholog_uniquename":"YJR009C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03903","ortholog_taxonid":4932,"ortholog_uniquename":"YJR009C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03903","ortholog_taxonid":4932,"ortholog_uniquename":"YJR009C","reference_uniquename":"PMID:26896847"}],"product":"glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain","references_by_uniquename":{"GO_REF:0000107":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0050661","GO:0051287"],"not-binding":["GO:0004365","GO:0019826"]}},"subset_termids":["GO:0005975","GO:0005829","GO:0005618","GO:0055086","GO:0023052","GO:0098772","GO:0140299","GO:0016491","GO:0006091"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004365":null,"GO:0005829":null,"GO:0009277":null,"GO:0019826":null,"GO:0034599":null,"GO:0050661":null,"GO:0051287":null,"GO:0061621":null,"GO:1900745":null,"GO:1990315":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03903.1"],"transcripts_by_uniquename":{"SJAG_03903.1":null},"uniprot_identifier":"B6JUV6","uniquename":"SJAG_03903"}


id: SJAG_03905
data:
  {"coiled_coil_coords":[{"range":{"end":167,"start":147}}],"cv_annotations":{"biological_process":[{"annotations":[104861],"is_not":false,"summary":null,"term":"GO:0034080"},{"annotations":[104863],"is_not":false,"summary":null,"term":"GO:0042273"},{"annotations":[104864],"is_not":false,"summary":null,"term":"GO:0042274"}],"cellular_component":[{"annotations":[104858],"is_not":false,"summary":null,"term":"GO:0030874"},{"annotations":[104860],"is_not":false,"summary":null,"term":"GO:0030684"}],"molecular_function":[{"annotations":[104865],"is_not":false,"summary":null,"term":"GO:0140713"},{"annotations":[104866],"is_not":false,"summary":null,"term":"GO:0140693"},{"annotations":[104867],"is_not":false,"summary":null,"term":"GO:0031491"},{"annotations":[72053],"is_not":false,"summary":null,"term":"GO:0003755"},{"annotations":[104869],"is_not":false,"summary":null,"term":"GO:0000182"},{"annotations":[104870],"is_not":false,"summary":null,"term":"GO:0003723"}],"mondo":[{"annotations":[89156],"is_not":false,"summary":null,"term":"MONDO:0018874"}]},"dbxrefs":["GOA:B6K5D3","InterPro:IPR041232","EnsemblGenomes-Tr:EEB08737","InterPro:IPR001179","InterPro:IPR023566","EnsemblGenomes-Gn:SJAG_03905","UniProtKB/TrEMBL:B6K5D3"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":260,"start":118}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rsv1","uniquename":"SJAG_03911"},{"name":"rbd3","uniquename":"SJAG_03910"},{"name":"lcf2","uniquename":"SJAG_03909"},{"name":"sec13","uniquename":"SJAG_03907"},{"name":"rev1","uniquename":"SJAG_03906"},{"name":"ani1","uniquename":"SJAG_03905"},{"uniquename":"SJAG_03903"},{"name":"tgs1","uniquename":"SJAG_03901"},{"name":"taf1","uniquename":"SJAG_03900"},{"name":"atg22","uniquename":"SJAG_03899"},{"name":"rqh1","uniquename":"SJAG_03898"}],"genes_by_uniquename":{"HGNC:7910":null,"HGNC:7930":null,"HGNC:7931":null,"SJAG_03905":null,"SPBC1347.02":null,"YLR449W":null,"YML074C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"FKBP-type peptidyl-prolyl cis-trans isomerase","id":"PF00254","interpro_description":"FKBP-type peptidyl-prolyl cis-trans isomerase domain","interpro_id":"IPR001179","interpro_name":"PPIase_FKBP_dom","locations":[{"end":364,"start":278}],"match_end":364,"match_start":278,"name":"FKBP_C"},{"dbname":"PFAM","description":"Nucleoplasmin-like domain","id":"PF17800","interpro_description":"Nucleoplasmin-like domain","interpro_id":"IPR041232","interpro_name":"NPL","locations":[{"end":119,"start":8}],"match_end":119,"match_start":8,"name":"NPL"},{"dbname":"PROSITE_PROFILES","description":"FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.","id":"PS50059","interpro_description":"FKBP-type peptidyl-prolyl cis-trans isomerase domain","interpro_id":"IPR001179","interpro_name":"PPIase_FKBP_dom","locations":[{"end":367,"start":281}],"match_end":367,"match_start":281,"name":"FKBP_PPIASE"},{"dbname":"FUNFAM","description":"Peptidyl-prolyl cis-trans isomerase","id":"G3DSA:3.10.50.40:FF:000006","locations":[{"end":368,"start":254}],"match_end":368,"match_start":254},{"dbname":"SUPERFAMILY","id":"SSF54534","locations":[{"end":366,"start":227}],"match_end":366,"match_start":227,"name":"FKBP-like"},{"dbname":"GENE3D","id":"G3DSA:3.10.50.40","interpro_description":"Peptidyl-prolyl cis-trans isomerase domain superfamily","interpro_id":"IPR046357","interpro_name":"PPIase_dom_sf","locations":[{"end":367,"start":252}],"match_end":367,"match_start":252},{"dbname":"GENE3D","id":"G3DSA:2.60.120.340","locations":[{"end":125,"start":6}],"match_end":125,"match_start":6,"name":"Nucleoplasmin core domain"},{"dbname":"PANTHER","id":"PTHR43811","locations":[{"end":367,"start":71}],"match_end":367,"match_start":71,"name":"FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA"},{"dbname":"PIRSF","id":"PIRSF001473","interpro_description":"Peptidyl-prolyl cis-trans isomerase Fpr3/Fpr4-like","interpro_id":"IPR023566","interpro_name":"PPIase_Fpr3/Fpr4-like","locations":[{"end":367,"start":1}],"match_end":367,"match_start":1,"name":"FK506-bp_FPR3"},{"dbname":"COILS","id":"Coil","locations":[{"end":167,"start":147}],"match_end":167,"match_start":147,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":260,"start":118}],"match_end":260,"match_start":118,"name":"disorder_prediction"},{"dbname":"MOBIDB-Negative-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Negative-Polyelectrolyte","locations":[{"end":169,"start":123},{"end":207,"start":195}],"match_end":207,"match_start":123,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":236,"start":219},{"end":258,"start":244}],"match_end":258,"match_start":219,"name":"disorder_prediction"},{"dbname":"MOBIDB-Positive-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Positive-Polyelectrolyte","locations":[{"end":190,"start":179}],"match_end":190,"match_start":179,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3512743,"start_pos":3511637,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":145,"start":120}},{"range":{"end":174,"start":150}},{"range":{"end":235,"start":201}}],"name":"ani1","ortholog_annotations":[{"gene_uniquename":"SJAG_03905","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:7910","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03905","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:7930","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03905","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:7931","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03905","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC1347.02","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03905","ortholog_taxonid":4932,"ortholog_uniquename":"YLR449W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03905","ortholog_taxonid":4932,"ortholog_uniquename":"YLR449W","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03905","ortholog_taxonid":4932,"ortholog_uniquename":"YML074C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03905","ortholog_taxonid":4932,"ortholog_uniquename":"YML074C","reference_uniquename":"PMID:26896847"}],"product":"nucleophosmin-like histone chaperone/CENP-A amino terminus domain (NTD) isomerase Ani1/Fkbp39","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0000182","GO:0031491","GO:0003723"],"not-binding":["GO:0140693","GO:0003755","GO:0140713"]}},"subset_termids":["GO:0005730","GO:0140096","MONDO:0005570","GO:0016853","GO:0060090","GO:0030684","MONDO:0004992","GO:0005694","GO:0005634","GO:0006325","GO:0065003","GO:0042254","MONDO:0005046","GO:0140104"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000182":null,"GO:0003723":null,"GO:0003755":null,"GO:0030684":null,"GO:0030874":null,"GO:0031491":null,"GO:0034080":null,"GO:0042273":null,"GO:0042274":null,"GO:0140693":null,"GO:0140713":null,"MONDO:0018874":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03905.1"],"transcripts_by_uniquename":{"SJAG_03905.1":null},"uniprot_identifier":"B6K5D3","uniquename":"SJAG_03905"}


id: SJAG_03906
data:
  {"binding_sites":[{"assigned_by":"UniProtKB","ligand":"Mg(2+)","range":{"end":345,"start":345}},{"assigned_by":"UniProtKB","ligand":"Mg(2+)","range":{"end":440,"start":440}},{"assigned_by":"UniProtKB","ligand":"Mg(2+)","range":{"end":441,"start":441}}],"cv_annotations":{"biological_process":[{"annotations":[72337],"is_not":false,"summary":null,"term":"GO:0070987"},{"annotations":[72335],"is_not":false,"summary":null,"term":"GO:0042276"},{"annotations":[104854],"is_not":false,"summary":null,"term":"GO:0043504"}],"cellular_component":[{"annotations":[104847],"is_not":false,"summary":null,"term":"GO:0000262"},{"annotations":[104848],"is_not":false,"summary":null,"term":"GO:0072686"},{"annotations":[104849],"is_not":false,"summary":null,"term":"GO:0005730"},{"annotations":[104851],"is_not":false,"summary":null,"term":"GO:0035861"}],"molecular_function":[{"annotations":[58101],"is_not":false,"summary":null,"term":"GO:0003684"},{"annotations":[72336],"is_not":false,"summary":null,"term":"GO:0017125"},{"annotations":[72334],"is_not":false,"summary":null,"term":"GO:0003887"}]},"dbxrefs":["InterPro:IPR012112","InterPro:IPR001357","InterPro:IPR038401","InterPro:IPR036420","EnsemblGenomes-Gn:SJAG_03906","UniProtKB/TrEMBL:B6K5D4","EnsemblGenomes-Tr:EEB08738","GOA:B6K5D4","InterPro:IPR001126","InterPro:IPR031991","InterPro:IPR036775","InterPro:IPR017961"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":30,"start":1}},{"range":{"end":247,"start":167}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"tpt1","uniquename":"SJAG_03913"},{"name":"rsv1","uniquename":"SJAG_03911"},{"name":"rbd3","uniquename":"SJAG_03910"},{"name":"lcf2","uniquename":"SJAG_03909"},{"name":"sec13","uniquename":"SJAG_03907"},{"name":"rev1","uniquename":"SJAG_03906"},{"name":"ani1","uniquename":"SJAG_03905"},{"uniquename":"SJAG_03903"},{"name":"tgs1","uniquename":"SJAG_03901"},{"name":"taf1","uniquename":"SJAG_03900"},{"name":"atg22","uniquename":"SJAG_03899"}],"genes_by_uniquename":{"HGNC:14060":null,"SJAG_03906":null,"SPBC1347.01c":null,"YOR346W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"impB/mucB/samB family","id":"PF00817","interpro_description":"UmuC domain","interpro_id":"IPR001126","interpro_name":"UmuC","locations":[{"end":490,"start":344}],"match_end":490,"match_start":344,"name":"IMS"},{"dbname":"PFAM","description":"impB/mucB/samB family C-terminal domain","id":"PF11799","interpro_description":"DNA polymerase, Y-family, little finger domain","interpro_id":"IPR017961","interpro_name":"DNA_pol_Y-fam_little_finger","locations":[{"end":699,"start":579}],"match_end":699,"match_start":579,"name":"IMS_C"},{"dbname":"PFAM","description":"BRCT domain","id":"PF16589","interpro_description":"BRCT domain","interpro_id":"IPR001357","interpro_name":"BRCT_dom","locations":[{"end":148,"start":65}],"match_end":148,"match_start":65,"name":"BRCT_2"},{"dbname":"PFAM","description":"DNA repair protein REV1 C-terminal domain","id":"PF16727","interpro_description":"DNA repair protein Rev1, C-terminal","interpro_id":"IPR031991","interpro_name":"Rev1_C","locations":[{"end":1003,"start":922}],"match_end":1003,"match_start":922,"name":"REV1_C"},{"dbname":"PFAM","description":"DNA polymerase-iota, thumb domain","id":"PF21999","interpro_description":"DNA polymerase IV/DNA polymerase iota-like, thumb domain","interpro_id":"IPR053848","interpro_name":"IMS_HHH_1","locations":[{"end":569,"start":516}],"match_end":569,"match_start":516,"name":"IMS_HHH_1"},{"dbname":"CDD","description":"BRCT_Rev1","id":"cd17719","locations":[{"end":149,"start":66}],"match_end":149,"match_start":66,"name":"BRCT_Rev1"},{"dbname":"PROSITE_PROFILES","description":"BRCT domain profile.","id":"PS50172","interpro_description":"BRCT domain","interpro_id":"IPR001357","interpro_name":"BRCT_dom","locations":[{"end":150,"start":62}],"match_end":150,"match_start":62,"name":"BRCT"},{"dbname":"PROSITE_PROFILES","description":"UmuC domain profile.","id":"PS50173","interpro_description":"UmuC domain","interpro_id":"IPR001126","interpro_name":"UmuC","locations":[{"end":522,"start":341}],"match_end":522,"match_start":341,"name":"UMUC"},{"dbname":"SMART","id":"SM00292","interpro_description":"BRCT domain","interpro_id":"IPR001357","interpro_name":"BRCT_dom","locations":[{"end":140,"start":64}],"match_end":140,"match_start":64,"name":"BRCT_7"},{"dbname":"FUNFAM","description":"DNA repair protein REV1","id":"G3DSA:3.40.50.10190:FF:000011","locations":[{"end":151,"start":59}],"match_end":151,"match_start":59},{"dbname":"FUNFAM","description":"DNA repair protein REV1","id":"G3DSA:3.30.1490.100:FF:000001","locations":[{"end":701,"start":579}],"match_end":701,"match_start":579},{"dbname":"SUPERFAMILY","id":"SSF56672","interpro_description":"DNA/RNA polymerase superfamily","interpro_id":"IPR043502","interpro_name":"DNA/RNA_pol_sf","locations":[{"end":571,"start":329}],"match_end":571,"match_start":329,"name":"DNA/RNA polymerases"},{"dbname":"SUPERFAMILY","id":"SSF52113","interpro_description":"BRCT domain superfamily","interpro_id":"IPR036420","interpro_name":"BRCT_dom_sf","locations":[{"end":149,"start":58}],"match_end":149,"match_start":58,"name":"BRCT domain"},{"dbname":"SUPERFAMILY","id":"SSF100879","interpro_description":"DNA polymerase, Y-family, little finger domain superfamily","interpro_id":"IPR036775","interpro_name":"DNA_pol_Y-fam_lit_finger_sf","locations":[{"end":690,"start":579}],"match_end":690,"match_start":579,"name":"Lesion bypass DNA polymerase (Y-family), little finger domain"},{"dbname":"GENE3D","id":"G3DSA:6.10.250.1490","locations":[{"end":325,"start":289}],"match_end":325,"match_start":289},{"dbname":"GENE3D","id":"G3DSA:3.30.70.270","interpro_description":"Reverse transcriptase/Diguanylate cyclase domain","interpro_id":"IPR043128","interpro_name":"Rev_trsase/Diguanyl_cyclase","locations":[{"end":357,"start":342},{"end":501,"start":410}],"match_end":501,"match_start":342},{"dbname":"GENE3D","id":"G3DSA:3.30.1490.100","interpro_description":"DNA polymerase, Y-family, little finger domain superfamily","interpro_id":"IPR036775","interpro_name":"DNA_pol_Y-fam_lit_finger_sf","locations":[{"end":701,"start":580}],"match_end":701,"match_start":580},{"dbname":"GENE3D","id":"G3DSA:3.40.1170.60","locations":[{"end":409,"start":358}],"match_end":409,"match_start":358},{"dbname":"GENE3D","id":"G3DSA:3.40.50.10190","interpro_description":"BRCT domain superfamily","interpro_id":"IPR036420","interpro_name":"BRCT_dom_sf","locations":[{"end":150,"start":61}],"match_end":150,"match_start":61,"name":"BRCT domain"},{"dbname":"GENE3D","id":"G3DSA:1.20.58.1280","interpro_description":"Rev1, C-terminal domain superfamily","interpro_id":"IPR038401","interpro_name":"Rev1_C_sf","locations":[{"end":995,"start":888}],"match_end":995,"match_start":888},{"dbname":"GENE3D","id":"G3DSA:1.10.150.20","locations":[{"end":579,"start":503}],"match_end":579,"match_start":503},{"dbname":"PANTHER","id":"PTHR45990","locations":[{"end":895,"start":20}],"match_end":895,"match_start":20,"name":"DNA REPAIR PROTEIN REV1"},{"dbname":"PIRSF","id":"PIRSF036573","interpro_description":"DNA repair protein Rev1","interpro_id":"IPR012112","interpro_name":"REV1","locations":[{"end":244,"start":12},{"end":925,"start":266}],"match_end":925,"match_start":12,"name":"REV1"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":30,"start":1},{"end":247,"start":167}],"match_end":247,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":242,"start":226}],"match_end":242,"match_start":226,"name":"disorder_prediction"},{"dbname":"MOBIDB-Proline-rich","description":"consensus disorder prediction","id":"mobidb-lite-Proline-rich","locations":[{"end":218,"start":206}],"match_end":218,"match_start":206,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3511241,"start_pos":3508221,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":33,"start":20}},{"range":{"end":192,"start":175}},{"range":{"end":218,"start":199}},{"range":{"end":493,"start":482}},{"range":{"end":624,"start":619}},{"range":{"end":716,"start":699}}],"name":"rev1","ortholog_annotations":[{"gene_uniquename":"SJAG_03906","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:14060","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03906","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC1347.01c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03906","ortholog_taxonid":4932,"ortholog_uniquename":"YOR346W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03906","ortholog_taxonid":4932,"ortholog_uniquename":"YOR346W","reference_uniquename":"PMID:26896847"}],"product":"deoxycytidyl transferase Rev1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003684"],"not-binding":["GO:0017125","GO:0003887"]}},"subset_termids":["GO:0016779","GO:0005739","GO:0072686","GO:0005694","GO:0015630","GO:0005634","GO:0140097","GO:0006281","GO:0005730"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000262":null,"GO:0003684":null,"GO:0003887":null,"GO:0005730":null,"GO:0017125":null,"GO:0035861":null,"GO:0042276":null,"GO:0043504":null,"GO:0070987":null,"GO:0072686":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03906.1"],"transcripts_by_uniquename":{"SJAG_03906.1":null},"uniprot_identifier":"B6K5D4","uniquename":"SJAG_03906"}


id: SJAG_03907
data:
  {"cv_annotations":{"biological_process":[{"annotations":[74901],"is_not":false,"summary":null,"term":"GO:0090114"},{"annotations":[74898],"is_not":false,"summary":null,"term":"GO:0032008"},{"annotations":[74899],"is_not":false,"summary":null,"term":"GO:0032527"},{"annotations":[74900],"is_not":false,"summary":null,"term":"GO:0006606"}],"cellular_component":[{"annotations":[74896],"is_not":false,"summary":null,"term":"GO:0030127"},{"annotations":[108537],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[108538],"is_not":false,"summary":null,"term":"GO:0061700"},{"annotations":[74897],"is_not":false,"summary":null,"term":"GO:0031080"}],"molecular_function":[{"annotations":[74895],"is_not":false,"summary":null,"term":"GO:0005198"}]},"dbxrefs":["InterPro:IPR037363","UniProtKB/TrEMBL:B6K5D5","GOA:B6K5D5","EnsemblGenomes-Gn:SJAG_03907","InterPro:IPR015943","InterPro:IPR001680","InterPro:IPR017986","InterPro:IPR036322","InterPro:IPR037596","EnsemblGenomes-Tr:EEB08739"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"shm2","uniquename":"SJAG_03914"},{"name":"tpt1","uniquename":"SJAG_03913"},{"name":"rsv1","uniquename":"SJAG_03911"},{"name":"rbd3","uniquename":"SJAG_03910"},{"name":"lcf2","uniquename":"SJAG_03909"},{"name":"sec13","uniquename":"SJAG_03907"},{"name":"rev1","uniquename":"SJAG_03906"},{"name":"ani1","uniquename":"SJAG_03905"},{"uniquename":"SJAG_03903"},{"name":"tgs1","uniquename":"SJAG_03901"},{"name":"taf1","uniquename":"SJAG_03900"}],"genes_by_uniquename":{"HGNC:10697":null,"SJAG_03907":null,"SPBC215.15":null,"YLR208W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"WD domain, G-beta repeat","id":"PF00400","interpro_description":"WD40 repeat","interpro_id":"IPR001680","interpro_name":"WD40_rpt","locations":[{"end":36,"start":7},{"end":82,"start":46},{"end":127,"start":96},{"end":186,"start":138},{"end":236,"start":199}],"match_end":236,"match_start":7,"name":"WD40"},{"dbname":"PROSITE_PROFILES","description":"Trp-Asp (WD) repeats circular profile.","id":"PS50294","locations":[{"end":82,"start":49}],"match_end":82,"match_start":49,"name":"WD_REPEATS_REGION"},{"dbname":"PROSITE_PROFILES","description":"Trp-Asp (WD) repeats profile.","id":"PS50082","interpro_description":"WD40 repeat","interpro_id":"IPR001680","interpro_name":"WD40_rpt","locations":[{"end":82,"start":49},{"end":236,"start":201}],"match_end":236,"match_start":49,"name":"WD_REPEATS_2"},{"dbname":"SMART","id":"SM00320","interpro_description":"WD40 repeat","interpro_id":"IPR001680","interpro_name":"WD40_rpt","locations":[{"end":37,"start":1},{"end":83,"start":42},{"end":129,"start":88},{"end":187,"start":134},{"end":237,"start":194},{"end":284,"start":243}],"match_end":284,"match_start":1,"name":"WD40_4"},{"dbname":"FUNFAM","description":"SEC13 homolog (S. cerevisiae)","id":"G3DSA:2.130.10.10:FF:000017","locations":[{"end":298,"start":1}],"match_end":298,"match_start":1},{"dbname":"SUPERFAMILY","id":"SSF50978","interpro_description":"WD40-repeat-containing domain superfamily","interpro_id":"IPR036322","interpro_name":"WD40_repeat_dom_sf","locations":[{"end":283,"start":7}],"match_end":283,"match_start":7,"name":"WD40 repeat-like"},{"dbname":"GENE3D","id":"G3DSA:2.130.10.10","interpro_description":"WD40/YVTN repeat-like-containing domain superfamily","interpro_id":"IPR015943","interpro_name":"WD40/YVTN_repeat-like_dom_sf","locations":[{"end":298,"start":1}],"match_end":298,"match_start":1},{"dbname":"PANTHER","id":"PTHR11024","interpro_description":"Sec13/Seh1 family","interpro_id":"IPR037363","interpro_name":"Sec13/Seh1_fam","locations":[{"end":297,"start":3}],"match_end":297,"match_start":3,"name":"NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER"}],"location":{"chromosome_name":"supercont5.2","end_pos":3508039,"start_pos":3507104,"strand":"forward"},"name":"sec13","ortholog_annotations":[{"gene_uniquename":"SJAG_03907","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10697","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03907","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC215.15","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03907","ortholog_taxonid":4932,"ortholog_uniquename":"YLR208W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03907","ortholog_taxonid":4932,"ortholog_uniquename":"YLR208W","reference_uniquename":"PMID:26896847"}],"product":"GATOR2-SEACAT complex/COPII-coated vesicle component/nuclear pore outer ring WD repeat protein Sec13","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0005198"]}},"subset_termids":["GO:0005643","GO:0005634","GO:0031410","GO:0016192","GO:0005829","GO:0005198","GO:0061024","GO:0023052","GO:0006913"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005198":null,"GO:0005829":null,"GO:0006606":null,"GO:0030127":null,"GO:0031080":null,"GO:0032008":null,"GO:0032527":null,"GO:0061700":null,"GO:0090114":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03907.1"],"transcripts_by_uniquename":{"SJAG_03907.1":null},"uniprot_identifier":"B6K5D5","uniquename":"SJAG_03907"}


id: SJAG_03909
data:
  {"cv_annotations":{"biological_process":[{"annotations":[79161],"is_not":false,"summary":null,"term":"GO:0001676"},{"annotations":[79162],"is_not":false,"summary":null,"term":"GO:0035336"}],"cellular_component":[{"annotations":[79164],"is_not":false,"summary":null,"term":"GO:0005783"},{"annotations":[115412],"is_not":false,"summary":null,"term":"GO:0000329"},{"annotations":[115413],"is_not":false,"summary":null,"term":"GO:0005794"},{"annotations":[79165],"is_not":false,"summary":null,"term":"GO:0005811"},{"annotations":[79166],"is_not":false,"summary":null,"term":"GO:0005886"}],"molecular_function":[{"annotations":[115418],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[115419],"is_not":false,"summary":null,"term":"GO:0016887"},{"annotations":[115420],"is_not":false,"summary":null,"term":"GO:0090432"}],"mondo":[{"annotations":[88122],"is_not":false,"summary":null,"term":"MONDO:0010313"}]},"dbxrefs":["InterPro:IPR020845","UniProtKB/TrEMBL:B6K5D6","GOA:B6K5D6","InterPro:IPR000873","EnsemblGenomes-Gn:SJAG_03909","EnsemblGenomes-Tr:EEB08740"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"ypt3","uniquename":"SJAG_03915"},{"name":"shm2","uniquename":"SJAG_03914"},{"name":"tpt1","uniquename":"SJAG_03913"},{"name":"rsv1","uniquename":"SJAG_03911"},{"name":"rbd3","uniquename":"SJAG_03910"},{"name":"lcf2","uniquename":"SJAG_03909"},{"name":"sec13","uniquename":"SJAG_03907"},{"name":"rev1","uniquename":"SJAG_03906"},{"name":"ani1","uniquename":"SJAG_03905"},{"uniquename":"SJAG_03903"},{"name":"tgs1","uniquename":"SJAG_03901"}],"genes_by_uniquename":{"HGNC:3570":null,"HGNC:3571":null,"SJAG_03909":null,"SPBP4H10.11c":null,"YIL009W":null,"YMR246W":null,"YOR317W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"AMP-binding enzyme","id":"PF00501","interpro_description":"AMP-dependent synthetase/ligase domain","interpro_id":"IPR000873","interpro_name":"AMP-dep_synth/lig_dom","locations":[{"end":503,"start":88}],"match_end":503,"match_start":88,"name":"AMP-binding"},{"dbname":"PROSITE_PATTERNS","description":"Putative AMP-binding domain signature.","id":"PS00455","interpro_description":"AMP-binding, conserved site","interpro_id":"IPR020845","interpro_name":"AMP-binding_CS","locations":[{"end":259,"start":248}],"match_end":259,"match_start":248,"name":"AMP_BINDING"},{"dbname":"SUPERFAMILY","id":"SSF56801","locations":[{"end":62,"start":16},{"end":359,"start":91},{"end":595,"start":400},{"end":683,"start":624}],"match_end":683,"match_start":16,"name":"Acetyl-CoA synthetase-like"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.12780","interpro_description":"ANL, N-terminal domain","interpro_id":"IPR042099","interpro_name":"ANL_N_sf","locations":[{"end":367,"start":58},{"end":536,"start":406}],"match_end":536,"match_start":58},{"dbname":"PANTHER","id":"PTHR43272","locations":[{"end":683,"start":15}],"match_end":683,"match_start":15,"name":"LONG-CHAIN-FATTY-ACID--COA LIGASE"}],"location":{"chromosome_name":"supercont5.2","end_pos":3505965,"start_pos":3503720,"strand":"reverse"},"name":"lcf2","ortholog_annotations":[{"gene_uniquename":"SJAG_03909","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:3570","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03909","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:3571","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03909","ortholog_taxonid":4896,"ortholog_uniquename":"SPBP4H10.11c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03909","ortholog_taxonid":4932,"ortholog_uniquename":"YIL009W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03909","ortholog_taxonid":4932,"ortholog_uniquename":"YIL009W","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03909","ortholog_taxonid":4932,"ortholog_uniquename":"YMR246W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03909","ortholog_taxonid":4932,"ortholog_uniquename":"YMR246W","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03909","ortholog_taxonid":4932,"ortholog_uniquename":"YOR317W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03909","ortholog_taxonid":4932,"ortholog_uniquename":"YOR317W","reference_uniquename":"PMID:26896847"}],"product":"long-chain-fatty-acid-CoA ligase","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524"],"not-binding":["GO:0016887","GO:0090432"]}},"subset_termids":["GO:0006790","GO:0005783","GO:0055086","GO:0006629","GO:0005773","GO:0005794","GO:0005886","GO:0016887","GO:0016874"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000329":null,"GO:0001676":null,"GO:0005524":null,"GO:0005783":null,"GO:0005794":null,"GO:0005811":null,"GO:0005886":null,"GO:0016887":null,"GO:0035336":null,"GO:0090432":null,"MONDO:0010313":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03909.1"],"transcripts_by_uniquename":{"SJAG_03909.1":null},"uniprot_identifier":"B6K5D6","uniquename":"SJAG_03909"}


id: SJAG_03910
data:
  {"cv_annotations":{"biological_process":[{"annotations":[115408],"is_not":false,"summary":null,"term":"GO:0034982"},{"annotations":[79277],"is_not":false,"summary":null,"term":"GO:0006465"}],"cellular_component":[{"annotations":[115406],"is_not":false,"summary":null,"term":"GO:0005743"}],"molecular_function":[{"annotations":[79276],"is_not":false,"summary":null,"term":"GO:0004252"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_03910","InterPro:IPR035952","GOA:B6K5D7","EnsemblGenomes-Tr:EEB08741","InterPro:IPR022764","UniProtKB/TrEMBL:B6K5D7"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"chp1","uniquename":"SJAG_03916"},{"name":"ypt3","uniquename":"SJAG_03915"},{"name":"shm2","uniquename":"SJAG_03914"},{"name":"tpt1","uniquename":"SJAG_03913"},{"name":"rsv1","uniquename":"SJAG_03911"},{"name":"rbd3","uniquename":"SJAG_03910"},{"name":"lcf2","uniquename":"SJAG_03909"},{"name":"sec13","uniquename":"SJAG_03907"},{"name":"rev1","uniquename":"SJAG_03906"},{"name":"ani1","uniquename":"SJAG_03905"},{"uniquename":"SJAG_03903"}],"genes_by_uniquename":{"SJAG_03910":null,"SPBP4H10.10":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Rhomboid domain","id":"PF01694","interpro_description":"Peptidase S54, rhomboid domain","interpro_id":"IPR022764","interpro_name":"Peptidase_S54_rhomboid_dom","locations":[{"end":249,"start":193},{"end":391,"start":313}],"match_end":391,"match_start":193,"name":"Rhomboid"},{"dbname":"SUPERFAMILY","id":"SSF144091","interpro_description":"Rhomboid-like superfamily","interpro_id":"IPR035952","interpro_name":"Rhomboid-like_sf","locations":[{"end":249,"start":144},{"end":396,"start":305}],"match_end":396,"match_start":144,"name":"Rhomboid-like"},{"dbname":"GENE3D","id":"G3DSA:1.20.1540.10","interpro_description":"Rhomboid-like superfamily","interpro_id":"IPR035952","interpro_name":"Rhomboid-like_sf","locations":[{"end":247,"start":140},{"end":394,"start":297}],"match_end":394,"match_start":140},{"dbname":"PANTHER","id":"PTHR43731","interpro_description":"Rhomboid protease S54","interpro_id":"IPR050925","interpro_name":"Rhomboid_protease_S54","locations":[{"end":395,"start":20}],"match_end":395,"match_start":20,"name":"RHOMBOID PROTEASE"}],"location":{"chromosome_name":"supercont5.2","end_pos":3502760,"start_pos":3501534,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":154,"start":146}},{"range":{"end":359,"start":348}},{"range":{"end":389,"start":374}}],"name":"rbd3","ortholog_annotations":[{"gene_uniquename":"SJAG_03910","ortholog_taxonid":4896,"ortholog_uniquename":"SPBP4H10.10","reference_uniquename":"PMID:21511999"}],"product":"mitochondrial rhomboid family peptidase Rbd3","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0004252"]}},"subset_termids":["GO:0140096","GO:0005739","GO:0051604","GO:0008233"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004252":null,"GO:0005743":null,"GO:0006465":null,"GO:0034982":null},"tm_domain_coords":[{"assigned_by":"TMHMM","range":{"end":164,"start":145}},{"assigned_by":"TMHMM","range":{"end":250,"start":229}},{"assigned_by":"TMHMM","range":{"end":356,"start":334}},{"assigned_by":"TMHMM","range":{"end":390,"start":371}}],"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03910.1"],"transcripts_by_uniquename":{"SJAG_03910.1":null},"uniprot_identifier":"B6K5D7","uniquename":"SJAG_03910"}


id: SJAG_03911
data:
  {"cv_annotations":{"biological_process":[{"annotations":[60192],"is_not":false,"summary":null,"term":"GO:0006357"}],"cellular_component":[{"annotations":[73912],"is_not":false,"summary":null,"term":"GO:0005737"},{"annotations":[115400],"is_not":false,"summary":null,"term":"GO:0072686"},{"annotations":[73911],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[60194],"is_not":false,"summary":null,"term":"GO:0000981"},{"annotations":[73913],"is_not":false,"summary":null,"term":"GO:0000978"},{"annotations":[60191],"is_not":false,"summary":null,"term":"GO:0008270"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_03911","EnsemblGenomes-Tr:EEB08742","InterPro:IPR013087","InterPro:IPR036236","UniProtKB/TrEMBL:B6K5D8","GOA:B6K5D8"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":183,"start":132}},{"range":{"end":306,"start":284}},{"range":{"end":415,"start":383}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_03918"},{"name":"chp1","uniquename":"SJAG_03916"},{"name":"ypt3","uniquename":"SJAG_03915"},{"name":"shm2","uniquename":"SJAG_03914"},{"name":"tpt1","uniquename":"SJAG_03913"},{"name":"rsv1","uniquename":"SJAG_03911"},{"name":"rbd3","uniquename":"SJAG_03910"},{"name":"lcf2","uniquename":"SJAG_03909"},{"name":"sec13","uniquename":"SJAG_03907"},{"name":"rev1","uniquename":"SJAG_03906"},{"name":"ani1","uniquename":"SJAG_03905"}],"genes_by_uniquename":{"SJAG_03911":null,"SPBP4H10.09":null,"YER028C":null,"YGL035C":null,"YGL209W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Zinc finger, C2H2 type","id":"PF00096","interpro_description":"Zinc finger C2H2-type","interpro_id":"IPR013087","interpro_name":"Znf_C2H2_type","locations":[{"end":125,"start":101}],"match_end":125,"match_start":101,"name":"zf-C2H2"},{"dbname":"PROSITE_PATTERNS","description":"Zinc finger C2H2 type domain signature.","id":"PS00028","interpro_description":"Zinc finger C2H2-type","interpro_id":"IPR013087","interpro_name":"Znf_C2H2_type","locations":[{"end":95,"start":75},{"end":125,"start":103}],"match_end":125,"match_start":75,"name":"ZINC_FINGER_C2H2_1"},{"dbname":"PROSITE_PROFILES","description":"Zinc finger C2H2 type domain profile.","id":"PS50157","interpro_description":"Zinc finger C2H2-type","interpro_id":"IPR013087","interpro_name":"Znf_C2H2_type","locations":[{"end":125,"start":73}],"match_end":125,"match_start":73,"name":"ZINC_FINGER_C2H2_2"},{"dbname":"SMART","id":"SM00355","interpro_description":"Zinc finger C2H2-type","interpro_id":"IPR013087","interpro_name":"Znf_C2H2_type","locations":[{"end":95,"start":73},{"end":125,"start":101}],"match_end":125,"match_start":73,"name":"c2h2final6"},{"dbname":"FUNFAM","description":"zinc finger protein 143 isoform X1","id":"G3DSA:3.30.160.60:FF:000072","locations":[{"end":127,"start":99}],"match_end":127,"match_start":99},{"dbname":"SUPERFAMILY","id":"SSF57667","interpro_description":"Zinc finger C2H2 superfamily","interpro_id":"IPR036236","interpro_name":"Znf_C2H2_sf","locations":[{"end":125,"start":71}],"match_end":125,"match_start":71,"name":"beta-beta-alpha zinc fingers"},{"dbname":"GENE3D","id":"G3DSA:3.30.160.60","locations":[{"end":125,"start":33}],"match_end":125,"match_start":33,"name":"Classic Zinc Finger"},{"dbname":"PANTHER","id":"PTHR47428","interpro_description":"creA/MIG C2H2-type Zinc-Finger","interpro_id":"IPR051007","interpro_name":"creA/MIG_C2H2-ZnF","locations":[{"end":596,"start":33}],"match_end":596,"match_start":33,"name":"REGULATORY PROTEIN MIG1-RELATED"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":183,"start":132},{"end":306,"start":284},{"end":415,"start":383}],"match_end":415,"match_start":132,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":165,"start":152},{"end":414,"start":396}],"match_end":414,"match_start":152,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":395,"start":383}],"match_end":395,"match_start":383,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3501137,"start_pos":3498797,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":31,"start":14}},{"range":{"end":53,"start":39}},{"range":{"end":164,"start":151}},{"range":{"end":198,"start":188}},{"range":{"end":413,"start":395}},{"range":{"end":561,"start":509}}],"name":"rsv1","ortholog_annotations":[{"gene_uniquename":"SJAG_03911","ortholog_taxonid":4896,"ortholog_uniquename":"SPBP4H10.09","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03911","ortholog_taxonid":4932,"ortholog_uniquename":"YER028C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03911","ortholog_taxonid":4932,"ortholog_uniquename":"YER028C","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03911","ortholog_taxonid":4932,"ortholog_uniquename":"YGL035C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03911","ortholog_taxonid":4932,"ortholog_uniquename":"YGL035C","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03911","ortholog_taxonid":4932,"ortholog_uniquename":"YGL209W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03911","ortholog_taxonid":4932,"ortholog_uniquename":"YGL209W","reference_uniquename":"PMID:26896847"}],"product":"DNA-binding transcription repressor Rsv1","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"GO_REF:0000117":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0000978","GO:0008270"],"not-binding":["GO:0000981"]}},"subset_termids":["GO:0006355","GO:0005634","GO:0006351","GO:0003700","GO:0072686","GO:0015630"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000978":null,"GO:0000981":null,"GO:0005634":null,"GO:0005737":null,"GO:0006357":null,"GO:0008270":null,"GO:0072686":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03911.1"],"transcripts_by_uniquename":{"SJAG_03911.1":null},"uniprot_identifier":"B6K5D8","uniquename":"SJAG_03911"}


id: SJAG_03913
data:
  {"cv_annotations":{"biological_process":[{"annotations":[75722],"is_not":false,"summary":null,"term":"GO:0006388"}],"cellular_component":[{"annotations":[97594],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[75723],"is_not":false,"summary":null,"term":"GO:0000215"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB08743","InterPro:IPR042080","UniProtKB/TrEMBL:B6K5D9","InterPro:IPR002745","EnsemblGenomes-Gn:SJAG_03913","GOA:B6K5D9","InterPro:IPR042081"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":343,"start":314}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rpl15b","uniquename":"SJAG_03919"},{"uniquename":"SJAG_03918"},{"name":"chp1","uniquename":"SJAG_03916"},{"name":"ypt3","uniquename":"SJAG_03915"},{"name":"shm2","uniquename":"SJAG_03914"},{"name":"tpt1","uniquename":"SJAG_03913"},{"name":"rsv1","uniquename":"SJAG_03911"},{"name":"rbd3","uniquename":"SJAG_03910"},{"name":"lcf2","uniquename":"SJAG_03909"},{"name":"sec13","uniquename":"SJAG_03907"},{"name":"rev1","uniquename":"SJAG_03906"}],"genes_by_uniquename":{"HGNC:20316":null,"HGNC:24857":null,"SJAG_03913":null,"SPAC2C4.12c":null,"YJR067C":null,"YOL102C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"RNA 2'-phosphotransferase, Tpt1 / KptA family","id":"PF01885","interpro_description":"Phosphotransferase KptA/Tpt1","interpro_id":"IPR002745","interpro_name":"Ptrans_KptA/Tpt1","locations":[{"end":179,"start":7}],"match_end":179,"match_start":7,"name":"PTS_2-RNA"},{"dbname":"SUPERFAMILY","id":"SSF56399","locations":[{"end":181,"start":9}],"match_end":181,"match_start":9,"name":"ADP-ribosylation"},{"dbname":"GENE3D","id":"G3DSA:3.20.170.30","interpro_description":"RNA 2'-phosphotransferase, C-terminal domain","interpro_id":"IPR042081","interpro_name":"RNA_2'-PTrans_C","locations":[{"end":199,"start":104}],"match_end":199,"match_start":104},{"dbname":"GENE3D","id":"G3DSA:1.10.10.970","interpro_description":"RNA 2'-phosphotransferase, N-terminal domain","interpro_id":"IPR042080","interpro_name":"RNA_2'-PTrans_N","locations":[{"end":79,"start":4}],"match_end":79,"match_start":4},{"dbname":"PANTHER","id":"PTHR12684","interpro_description":"Phosphotransferase KptA/Tpt1","interpro_id":"IPR002745","interpro_name":"Ptrans_KptA/Tpt1","locations":[{"end":198,"start":3}],"match_end":198,"match_start":3,"name":"PUTATIVE PHOSPHOTRANSFERASE"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":343,"start":314}],"match_end":343,"match_start":314,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3498264,"start_pos":3497143,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":219,"start":207}}],"name":"tpt1","ortholog_annotations":[{"gene_uniquename":"SJAG_03913","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:20316","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03913","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:24857","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03913","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC2C4.12c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03913","ortholog_taxonid":4932,"ortholog_uniquename":"YJR067C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03913","ortholog_taxonid":4932,"ortholog_uniquename":"YOL102C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03913","ortholog_taxonid":4932,"ortholog_uniquename":"YOL102C","reference_uniquename":"PMID:26896847"}],"product":"tRNA 2'-phosphotransferase Tpt1/ CIA machinery involved in ribosome biogenesis protein Yae1 fusion protein","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0000215"]}},"subset_termids":["GO:0005634","GO:0006399","GO:0140101","GO:0140098"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000215":null,"GO:0005634":null,"GO:0006388":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03913.1"],"transcripts_by_uniquename":{"SJAG_03913.1":null},"uniprot_identifier":"B6K5D9","uniquename":"SJAG_03913"}


id: SJAG_03914
data:
  {"cv_annotations":{"PSI-MOD":[{"annotations":[82412],"is_not":false,"summary":null,"term":"MOD:00128"}],"biological_process":[{"annotations":[73963],"is_not":false,"summary":null,"term":"GO:0019264"},{"annotations":[60250],"is_not":false,"summary":null,"term":"GO:0035999"}],"cellular_component":[{"annotations":[73962],"is_not":false,"summary":null,"term":"GO:0005739"}],"molecular_function":[{"annotations":[73961],"is_not":false,"summary":null,"term":"GO:0004372"},{"annotations":[73965],"is_not":false,"summary":null,"term":"GO:0030170"}],"mondo":[{"annotations":[87617],"is_not":false,"summary":null,"term":"MONDO:0030866"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_03914","InterPro:IPR015421","GOA:B6K5E0","InterPro:IPR039429","InterPro:IPR001085","InterPro:IPR019798","InterPro:IPR015424","EnsemblGenomes-Tr:EEB08744","InterPro:IPR015422","UniProtKB/TrEMBL:B6K5E0"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"sdh3","uniquename":"SJAG_03920"},{"name":"rpl15b","uniquename":"SJAG_03919"},{"uniquename":"SJAG_03918"},{"name":"chp1","uniquename":"SJAG_03916"},{"name":"ypt3","uniquename":"SJAG_03915"},{"name":"shm2","uniquename":"SJAG_03914"},{"name":"tpt1","uniquename":"SJAG_03913"},{"name":"rsv1","uniquename":"SJAG_03911"},{"name":"rbd3","uniquename":"SJAG_03910"},{"name":"lcf2","uniquename":"SJAG_03909"},{"name":"sec13","uniquename":"SJAG_03907"}],"genes_by_uniquename":{"HGNC:10850":null,"HGNC:10852":null,"SJAG_03914":null,"SPAC18G6.04c":null,"YBR263W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Serine hydroxymethyltransferase","id":"PF00464","interpro_description":"Serine hydroxymethyltransferase-like domain","interpro_id":"IPR039429","interpro_name":"SHMT-like_dom","locations":[{"end":434,"start":36}],"match_end":434,"match_start":36,"name":"SHMT"},{"dbname":"CDD","description":"SHMT","id":"cd00378","interpro_description":"Serine hydroxymethyltransferase","interpro_id":"IPR001085","interpro_name":"Ser_HO-MeTrfase","locations":[{"end":444,"start":37}],"match_end":444,"match_start":37,"name":"SHMT"},{"dbname":"PROSITE_PATTERNS","description":"Serine hydroxymethyltransferase pyridoxal-phosphate attachment site.","id":"PS00096","interpro_description":"Serine hydroxymethyltransferase, pyridoxal phosphate binding site","interpro_id":"IPR019798","interpro_name":"Ser_HO-MeTrfase_PLP_BS","locations":[{"end":275,"start":259}],"match_end":275,"match_start":259,"name":"SHMT"},{"dbname":"FUNFAM","description":"Serine hydroxymethyltransferase","id":"G3DSA:3.40.640.10:FF:000097","locations":[{"end":282,"start":65}],"match_end":282,"match_start":65},{"dbname":"SUPERFAMILY","id":"SSF53383","interpro_description":"Pyridoxal phosphate-dependent transferase","interpro_id":"IPR015424","interpro_name":"PyrdxlP-dep_Trfase","locations":[{"end":489,"start":23}],"match_end":489,"match_start":23,"name":"PLP-dependent transferases"},{"dbname":"GENE3D","id":"G3DSA:3.90.1150.10","interpro_description":"Pyridoxal phosphate-dependent transferase, small domain","interpro_id":"IPR015422","interpro_name":"PyrdxlP-dep_Trfase_small","locations":[{"end":64,"start":40},{"end":489,"start":339}],"match_end":489,"match_start":40,"name":"Aspartate Aminotransferase, domain 1"},{"dbname":"GENE3D","id":"G3DSA:3.40.640.10","interpro_description":"Pyridoxal phosphate-dependent transferase, major domain","interpro_id":"IPR015421","interpro_name":"PyrdxlP-dep_Trfase_major","locations":[{"end":338,"start":65}],"match_end":338,"match_start":65},{"dbname":"PANTHER","id":"PTHR11680","interpro_description":"Serine hydroxymethyltransferase-like","interpro_id":"IPR049943","interpro_name":"Ser_HO-MeTrfase-like","locations":[{"end":489,"start":27}],"match_end":489,"match_start":27,"name":"SERINE HYDROXYMETHYLTRANSFERASE"},{"dbname":"PIRSF","id":"PIRSF000412","interpro_description":"Serine hydroxymethyltransferase","interpro_id":"IPR001085","interpro_name":"Ser_HO-MeTrfase","locations":[{"end":489,"start":19}],"match_end":489,"match_start":19,"name":"SHMT"},{"dbname":"HAMAP","description":"Serine hydroxymethyltransferase [glyA].","id":"MF_00051","interpro_description":"Serine hydroxymethyltransferase","interpro_id":"IPR001085","interpro_name":"Ser_HO-MeTrfase","locations":[{"end":490,"start":35}],"match_end":490,"match_start":35,"name":"SHMT"},{"dbname":"NCBIFAM","description":"serine hydroxymethyltransferase","id":"NF000586","locations":[{"end":454,"start":40}],"match_end":454,"match_start":40,"name":"PRK00011.1"}],"location":{"chromosome_name":"supercont5.2","end_pos":3496393,"start_pos":3494717,"strand":"reverse"},"name":"shm2","ortholog_annotations":[{"gene_uniquename":"SJAG_03914","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10850","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03914","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10852","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03914","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC18G6.04c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03914","ortholog_taxonid":4932,"ortholog_uniquename":"YBR263W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03914","ortholog_taxonid":4932,"ortholog_uniquename":"YBR263W","reference_uniquename":"PMID:26896847"}],"product":"serine hydroxymethyltransferase Shm2","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null,"PMID:36408920":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0030170"],"not-binding":["GO:0004372"]}},"subset_termids":["GO:0016741","GO:0005739","GO:0006520","MONDO:0700092"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004372":null,"GO:0005739":null,"GO:0019264":null,"GO:0030170":null,"GO:0035999":null,"MOD:00128":null,"MONDO:0030866":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03914.1"],"transcripts_by_uniquename":{"SJAG_03914.1":null},"uniprot_identifier":"B6K5E0","uniquename":"SJAG_03914"}


id: SJAG_03915
data:
  {"cv_annotations":{"biological_process":[{"annotations":[93238],"is_not":false,"summary":null,"term":"GO:0032120"},{"annotations":[93239],"is_not":false,"summary":null,"term":"GO:0099638"},{"annotations":[72948],"is_not":false,"summary":null,"term":"GO:0006887"},{"annotations":[93241],"is_not":false,"summary":null,"term":"GO:0061796"},{"annotations":[93243],"is_not":false,"summary":null,"term":"GO:1990896"},{"annotations":[93244],"is_not":false,"summary":null,"term":"GO:1902441"},{"annotations":[93245],"is_not":false,"summary":null,"term":"GO:0042144"}],"cellular_component":[{"annotations":[93226],"is_not":false,"summary":null,"term":"GO:0090689"},{"annotations":[93227],"is_not":false,"summary":null,"term":"GO:0090726"},{"annotations":[93230],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[72947],"is_not":false,"summary":null,"term":"GO:0005794"},{"annotations":[121639],"is_not":false,"summary":null,"term":"GO:0035838"},{"annotations":[121640],"is_not":false,"summary":null,"term":"GO:0001411"},{"annotations":[93233],"is_not":false,"summary":null,"term":"GO:0090619"},{"annotations":[93234],"is_not":false,"summary":null,"term":"GO:0035974"},{"annotations":[93235],"is_not":false,"summary":null,"term":"GO:0005634"},{"annotations":[93236],"is_not":false,"summary":null,"term":"GO:0005628"},{"annotations":[72945],"is_not":false,"summary":null,"term":"GO:0055037"},{"annotations":[121650],"is_not":false,"summary":null,"term":"GO:0030133"}],"molecular_function":[{"annotations":[72944],"is_not":false,"summary":null,"term":"GO:0005525"},{"annotations":[72946],"is_not":false,"summary":null,"term":"GO:0003924"}],"mondo":[{"annotations":[86988],"is_not":false,"summary":null,"term":"MONDO:0060624"}]},"dbxrefs":["InterPro:IPR027417","InterPro:IPR005225","InterPro:IPR001806","GOA:B6K5E1","EnsemblGenomes-Gn:SJAG_03915","UniProtKB/TrEMBL:B6K5E1","EnsemblGenomes-Tr:EEB08745"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":214,"start":183}}],"feature_publications":[{"reference_uniquename":"PMID:30726171","source":"canto"}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rpc37","uniquename":"SJAG_03921"},{"name":"sdh3","uniquename":"SJAG_03920"},{"name":"rpl15b","uniquename":"SJAG_03919"},{"uniquename":"SJAG_03918"},{"name":"chp1","uniquename":"SJAG_03916"},{"name":"ypt3","uniquename":"SJAG_03915"},{"name":"shm2","uniquename":"SJAG_03914"},{"name":"tpt1","uniquename":"SJAG_03913"},{"name":"rsv1","uniquename":"SJAG_03911"},{"name":"rbd3","uniquename":"SJAG_03910"},{"name":"lcf2","uniquename":"SJAG_03909"}],"genes_by_uniquename":{"HGNC:9760":null,"HGNC:9761":null,"SJAG_03915":null,"SPAC18G6.03":null,"YER031C":null,"YGL210W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Ras family","id":"PF00071","interpro_description":"Small GTPase","interpro_id":"IPR001806","interpro_name":"Small_GTPase","locations":[{"end":171,"start":12}],"match_end":171,"match_start":12,"name":"Ras"},{"dbname":"CDD","description":"Rab11_like","id":"cd01868","locations":[{"end":172,"start":8}],"match_end":172,"match_start":8,"name":"Rab11_like"},{"dbname":"PROSITE_PROFILES","description":"small GTPase Rab1 family profile.","id":"PS51419","locations":[{"end":214,"start":6}],"match_end":214,"match_start":6,"name":"RAB"},{"dbname":"PROSITE_PROFILES","description":"small GTPase Ras family profile.","id":"PS51421","interpro_description":"Small GTPase","interpro_id":"IPR001806","interpro_name":"Small_GTPase","locations":[{"end":214,"start":2}],"match_end":214,"match_start":2,"name":"RAS"},{"dbname":"PROSITE_PROFILES","description":"small GTPase Rho family profile.","id":"PS51420","locations":[{"end":175,"start":4}],"match_end":175,"match_start":4,"name":"RHO"},{"dbname":"SMART","id":"SM00174","interpro_description":"Small GTPase","interpro_id":"IPR001806","interpro_name":"Small_GTPase","locations":[{"end":170,"start":13}],"match_end":170,"match_start":13,"name":"rho_sub_3"},{"dbname":"SMART","id":"SM00175","locations":[{"end":174,"start":11}],"match_end":174,"match_start":11,"name":"rab_sub_5"},{"dbname":"SMART","id":"SM00176","locations":[{"end":209,"start":16}],"match_end":209,"match_start":16,"name":"ran_sub_2"},{"dbname":"SMART","id":"SM00173","locations":[{"end":174,"start":8}],"match_end":174,"match_start":8,"name":"ras_sub_4"},{"dbname":"PRINTS","description":"Transforming protein P21 ras signature","id":"PR00449","locations":[{"end":32,"start":11},{"end":50,"start":34},{"end":74,"start":52},{"end":127,"start":114},{"end":171,"start":149}],"match_end":171,"match_start":11,"name":"RASTRNSFRMNG"},{"dbname":"FUNFAM","description":"ras-related protein RABA1f","id":"G3DSA:3.40.50.300:FF:000067","locations":[{"end":214,"start":3}],"match_end":214,"match_start":3},{"dbname":"SUPERFAMILY","id":"SSF52540","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":175,"start":6}],"match_end":175,"match_start":6,"name":"P-loop containing nucleoside triphosphate hydrolases"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.300","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":214,"start":3}],"match_end":214,"match_start":3},{"dbname":"PANTHER","id":"PTHR47979","interpro_description":"Rab GTPases family involved in membrane trafficking","interpro_id":"IPR050209","interpro_name":"Rab_GTPases_membrane_traffic","locations":[{"end":183,"start":6}],"match_end":183,"match_start":6,"name":"DRAB11-RELATED"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":214,"start":183}],"match_end":214,"match_start":183,"name":"disorder_prediction"},{"dbname":"NCBIFAM","description":"small GTP-binding protein domain","id":"TIGR00231","interpro_description":"Small GTP-binding domain","interpro_id":"IPR005225","interpro_name":"Small_GTP-bd","locations":[{"end":168,"start":10}],"match_end":168,"match_start":10,"name":"small_GTP"}],"location":{"chromosome_name":"supercont5.2","end_pos":3494367,"start_pos":3493509,"strand":"forward"},"name":"ypt3","ortholog_annotations":[{"gene_uniquename":"SJAG_03915","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:9760","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03915","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:9761","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03915","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC18G6.03","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03915","ortholog_taxonid":4932,"ortholog_uniquename":"YER031C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03915","ortholog_taxonid":4932,"ortholog_uniquename":"YER031C","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03915","ortholog_taxonid":4932,"ortholog_uniquename":"YGL210W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03915","ortholog_taxonid":4932,"ortholog_uniquename":"YGL210W","reference_uniquename":"PMID:26896847"}],"product":"Rab11 family GTPase Ypt3","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null,"PMID:30726171":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005525"],"not-binding":["GO:0003924"]}},"subset_termids":["GO:0005768","GO:0005829","GO:0030437","GO:0016192","GO:0005886","GO:0031410","GO:0003924","GO:0005938","GO:0015630","GO:0000281","GO:0000226","GO:0005634","GO:0005816","GO:0061024","GO:0005628","MONDO:0700092","GO:0005794"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0001411":null,"GO:0003924":null,"GO:0005525":null,"GO:0005628":null,"GO:0005634":null,"GO:0005794":null,"GO:0005829":null,"GO:0006887":null,"GO:0030133":null,"GO:0032120":null,"GO:0035838":null,"GO:0035974":null,"GO:0042144":null,"GO:0055037":null,"GO:0061796":null,"GO:0090619":null,"GO:0090689":null,"GO:0090726":null,"GO:0099638":null,"GO:1902441":null,"GO:1990896":null,"MONDO:0060624":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03915.1"],"transcripts_by_uniquename":{"SJAG_03915.1":null},"uniprot_identifier":"B6K5E1","uniquename":"SJAG_03915"}


id: SJAG_03916
data:
  {"alleles_by_uniquename":{"SJAG_03916:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03916","name":"chp1delta","uniquename":"SJAG_03916:allele-1"}},"coiled_coil_coords":[{"range":{"end":112,"start":76}},{"range":{"end":476,"start":456}}],"cv_annotations":{"biological_process":[{"annotations":[93220],"is_not":false,"summary":null,"term":"GO:0030466"},{"annotations":[93221],"is_not":false,"summary":null,"term":"GO:0140727"},{"annotations":[93222],"is_not":false,"summary":null,"term":"GO:0031509"}],"cellular_component":[{"annotations":[93211],"is_not":false,"summary":null,"term":"GO:0000779"},{"annotations":[93212],"is_not":false,"summary":null,"term":"GO:1990342"},{"annotations":[93213],"is_not":false,"summary":null,"term":"GO:0031934"},{"annotations":[93215],"is_not":false,"summary":null,"term":"GO:0005721"},{"annotations":[93216],"is_not":false,"summary":null,"term":"GO:0030958"},{"annotations":[93217],"is_not":false,"summary":null,"term":"GO:0140720"}],"molecular_function":[{"annotations":[93223],"is_not":false,"summary":null,"term":"GO:0003677"},{"annotations":[62201],"is_not":false,"summary":null,"term":"GO:0042393"},{"annotations":[93224],"is_not":false,"summary":null,"term":"GO:0062072"},{"annotations":[93225],"is_not":false,"summary":null,"term":"GO:0003727"}],"single_locus_phenotype":[{"annotations":[121139],"is_not":false,"summary":null,"term":"FYPO:0002061"}]},"dbxrefs":["InterPro:IPR035979","UniProtKB/TrEMBL:B6K5E2","InterPro:IPR023780","InterPro:IPR016197","InterPro:IPR000953","GOA:B6K5E2","EnsemblGenomes-Tr:EEB08746","InterPro:IPR023779","EnsemblGenomes-Gn:SJAG_03916","InterPro:IPR012677"],"deletion_viability":"inviable","disordered_region_coords":[{"range":{"end":295,"start":74}},{"range":{"end":611,"start":415}}],"feature_publications":[{"reference_uniquename":"PMID:35226668","source":"canto"}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rpl24b","uniquename":"SJAG_03922"},{"name":"rpc37","uniquename":"SJAG_03921"},{"name":"sdh3","uniquename":"SJAG_03920"},{"name":"rpl15b","uniquename":"SJAG_03919"},{"uniquename":"SJAG_03918"},{"name":"chp1","uniquename":"SJAG_03916"},{"name":"ypt3","uniquename":"SJAG_03915"},{"name":"shm2","uniquename":"SJAG_03914"},{"name":"tpt1","uniquename":"SJAG_03913"},{"name":"rsv1","uniquename":"SJAG_03911"},{"name":"rbd3","uniquename":"SJAG_03910"}],"genes_by_uniquename":{"SJAG_03916":null,"SPAC18G6.02c":null},"genotypes_by_uniquename":{"chp1delta":{"display_name":"chp1delta","display_uniquename":"chp1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03916:allele-1","expression":"Null"}]}]}},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Chromo domain-containing protein 1-like, SPOC domain","id":"PF22380","interpro_description":"Chp1, SPOC domain","interpro_id":"IPR049938","interpro_name":"SPOC_Chp1p","locations":[{"end":769,"start":635}],"match_end":769,"match_start":635,"name":"Chp1-like_SPOC"},{"dbname":"PFAM","description":"Chp1 domain II","id":"PF23340","interpro_description":"Chp1, domain II","interpro_id":"IPR056341","interpro_name":"Chp1_domII","locations":[{"end":890,"start":803}],"match_end":890,"match_start":803,"name":"Chp1_domII"},{"dbname":"PFAM","description":"RNA recognition motif","id":"PF00076","interpro_description":"RNA recognition motif domain","interpro_id":"IPR000504","interpro_name":"RRM_dom","locations":[{"end":389,"start":332}],"match_end":389,"match_start":332,"name":"RRM_1"},{"dbname":"PFAM","description":"Chromo domain-containing protein 1-like, PIN domain","id":"PF21484","interpro_description":"Chop1, PIN domain","interpro_id":"IPR048709","interpro_name":"Chp1_PIN","locations":[{"end":1074,"start":927}],"match_end":1074,"match_start":927,"name":"Chp1-like_PIN"},{"dbname":"PFAM","description":"Chromo (CHRromatin Organisation MOdifier) domain","id":"PF00385","interpro_description":"Chromo domain","interpro_id":"IPR023780","interpro_name":"Chromo_domain","locations":[{"end":64,"start":13}],"match_end":64,"match_start":13,"name":"Chromo"},{"dbname":"CDD","description":"SPOC_Chp1p","id":"cd21545","interpro_description":"Chp1, SPOC domain","interpro_id":"IPR049938","interpro_name":"SPOC_Chp1p","locations":[{"end":768,"start":636}],"match_end":768,"match_start":636,"name":"SPOC_Chp1p"},{"dbname":"CDD","description":"RRM_SF","id":"cd00590","locations":[{"end":392,"start":332}],"match_end":392,"match_start":332,"name":"RRM_SF"},{"dbname":"CDD","description":"CD_Chp1_like","id":"cd18636","interpro_description":"Chp1, chromodomain","interpro_id":"IPR049937","interpro_name":"CD_Chp1-like","locations":[{"end":63,"start":12}],"match_end":63,"match_start":12,"name":"CD_Chp1_like"},{"dbname":"PROSITE_PATTERNS","description":"Chromo domain signature.","id":"PS00598","interpro_description":"Chromo domain, conserved site","interpro_id":"IPR023779","interpro_name":"Chromodomain_CS","locations":[{"end":51,"start":31}],"match_end":51,"match_start":31,"name":"CHROMO_1"},{"dbname":"PROSITE_PROFILES","description":"Chromo and chromo shadow domain profile.","id":"PS50013","interpro_description":"Chromo/chromo shadow domain","interpro_id":"IPR000953","interpro_name":"Chromo/chromo_shadow_dom","locations":[{"end":88,"start":13}],"match_end":88,"match_start":13,"name":"CHROMO_2"},{"dbname":"SMART","id":"SM00298","interpro_description":"Chromo/chromo shadow domain","interpro_id":"IPR000953","interpro_name":"Chromo/chromo_shadow_dom","locations":[{"end":66,"start":12}],"match_end":66,"match_start":12,"name":"chromo_7"},{"dbname":"SUPERFAMILY","id":"SSF54160","interpro_description":"Chromo-like domain superfamily","interpro_id":"IPR016197","interpro_name":"Chromo-like_dom_sf","locations":[{"end":65,"start":4}],"match_end":65,"match_start":4,"name":"Chromo domain-like"},{"dbname":"SUPERFAMILY","id":"SSF54928","interpro_description":"RNA-binding domain superfamily","interpro_id":"IPR035979","interpro_name":"RBD_domain_sf","locations":[{"end":392,"start":325}],"match_end":392,"match_start":325,"name":"RNA-binding domain, RBD"},{"dbname":"GENE3D","id":"G3DSA:3.40.1010.30","locations":[{"end":900,"start":781}],"match_end":900,"match_start":781},{"dbname":"GENE3D","id":"G3DSA:2.40.50.40","locations":[{"end":66,"start":6}],"match_end":66,"match_start":6},{"dbname":"GENE3D","id":"G3DSA:2.40.290.20","locations":[{"end":780,"start":621}],"match_end":780,"match_start":621},{"dbname":"GENE3D","id":"G3DSA:3.40.50.11490","locations":[{"end":1078,"start":925}],"match_end":1078,"match_start":925},{"dbname":"GENE3D","id":"G3DSA:3.30.70.330","interpro_description":"Nucleotide-binding alpha-beta plait domain superfamily","interpro_id":"IPR012677","interpro_name":"Nucleotide-bd_a/b_plait_sf","locations":[{"end":397,"start":326}],"match_end":397,"match_start":326},{"dbname":"COILS","id":"Coil","locations":[{"end":112,"start":76},{"end":476,"start":456}],"match_end":476,"match_start":76,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":295,"start":74},{"end":611,"start":415}],"match_end":611,"match_start":74,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":145,"start":135},{"end":241,"start":231}],"match_end":241,"match_start":135,"name":"disorder_prediction"},{"dbname":"MOBIDB-Negative-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Negative-Polyelectrolyte","locations":[{"end":186,"start":172}],"match_end":186,"match_start":172,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":582,"start":571}],"match_end":582,"match_start":571,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":96,"start":76},{"end":465,"start":455},{"end":547,"start":490}],"match_end":547,"match_start":76,"name":"disorder_prediction"},{"dbname":"MOBIDB-Positive-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Positive-Polyelectrolyte","locations":[{"end":285,"start":267},{"end":564,"start":548}],"match_end":564,"match_start":267,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3492395,"start_pos":3489159,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":15,"start":1}},{"range":{"end":104,"start":81}},{"range":{"end":167,"start":127}},{"range":{"end":184,"start":171}},{"range":{"end":240,"start":230}},{"range":{"end":477,"start":456}},{"range":{"end":543,"start":503}},{"range":{"end":561,"start":545}},{"range":{"end":602,"start":585}},{"range":{"end":665,"start":652}}],"name":"chp1","ortholog_annotations":[{"gene_uniquename":"SJAG_03916","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC18G6.02c","reference_uniquename":"PMID:21511999"}],"product":"heterochromatin (HP1) family chromodomain protein Chp1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:35226668":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0042393","GO:0003677","GO:0003727"],"not-binding":["GO:0062072"]},"single_locus_phenotype":{"population_phenotype":["FYPO:0002061"]}},"subset_termids":["GO:0060090","GO:0005634","GO:0006325","GO:0005694","FYPO:0002059"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000162":null,"FYPO:0002061":null,"GO:0000779":null,"GO:0003677":null,"GO:0003727":null,"GO:0005721":null,"GO:0030466":null,"GO:0030958":null,"GO:0031509":null,"GO:0031934":null,"GO:0042393":null,"GO:0062072":null,"GO:0140720":null,"GO:0140727":null,"GO:1990342":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03916.1"],"transcripts_by_uniquename":{"SJAG_03916.1":null},"uniprot_identifier":"B6K5E2","uniquename":"SJAG_03916"}


id: SJAG_03918
data:
  {"cv_annotations":{"biological_process":[{"annotations":[70871],"is_not":false,"summary":null,"term":"GO:0006357"}],"cellular_component":[{"annotations":[90347],"is_not":false,"summary":null,"term":"GO:0005737"},{"annotations":[90348],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[70870],"is_not":false,"summary":null,"term":"GO:0000981"},{"annotations":[90351],"is_not":false,"summary":null,"term":"GO:0000978"},{"annotations":[70866],"is_not":false,"summary":null,"term":"GO:0008270"}]},"dbxrefs":["InterPro:IPR036864","UniProtKB/TrEMBL:B6K5E3","InterPro:IPR001138","GOA:B6K5E3","EnsemblGenomes-Gn:SJAG_03918","EnsemblGenomes-Tr:EEB08747","InterPro:IPR007219"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":75,"start":1}},{"range":{"end":152,"start":126}},{"range":{"end":237,"start":182}},{"range":{"end":419,"start":391}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"dbl8","uniquename":"SJAG_03923"},{"name":"rpl24b","uniquename":"SJAG_03922"},{"name":"rpc37","uniquename":"SJAG_03921"},{"name":"sdh3","uniquename":"SJAG_03920"},{"name":"rpl15b","uniquename":"SJAG_03919"},{"uniquename":"SJAG_03918"},{"name":"chp1","uniquename":"SJAG_03916"},{"name":"ypt3","uniquename":"SJAG_03915"},{"name":"shm2","uniquename":"SJAG_03914"},{"name":"tpt1","uniquename":"SJAG_03913"},{"name":"rsv1","uniquename":"SJAG_03911"}],"genes_by_uniquename":{"SJAG_03918":null,"SPAC1327.01c":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Fungal specific transcription factor domain","id":"PF04082","interpro_description":"Xylanolytic transcriptional activator, regulatory domain","interpro_id":"IPR007219","interpro_name":"XnlR_reg_dom","locations":[{"end":680,"start":451}],"match_end":680,"match_start":451,"name":"Fungal_trans"},{"dbname":"PFAM","description":"Fungal Zn(2)-Cys(6) binuclear cluster domain","id":"PF00172","interpro_description":"Zn(2)Cys(6) fungal-type DNA-binding domain","interpro_id":"IPR001138","interpro_name":"Zn2Cys6_DnaBD","locations":[{"end":117,"start":81}],"match_end":117,"match_start":81,"name":"Zn_clus"},{"dbname":"CDD","description":"fungal_TF_MHR","id":"cd12148","locations":[{"end":889,"start":441}],"match_end":889,"match_start":441,"name":"fungal_TF_MHR"},{"dbname":"CDD","description":"GAL4","id":"cd00067","interpro_description":"Zn(2)Cys(6) fungal-type DNA-binding domain","interpro_id":"IPR001138","interpro_name":"Zn2Cys6_DnaBD","locations":[{"end":112,"start":77}],"match_end":112,"match_start":77,"name":"GAL4"},{"dbname":"PROSITE_PATTERNS","description":"Zn(2)-C6 fungal-type DNA-binding domain signature.","id":"PS00463","interpro_description":"Zn(2)Cys(6) fungal-type DNA-binding domain","interpro_id":"IPR001138","interpro_name":"Zn2Cys6_DnaBD","locations":[{"end":109,"start":81}],"match_end":109,"match_start":81,"name":"ZN2_CY6_FUNGAL_1"},{"dbname":"PROSITE_PROFILES","description":"Zn(2)-C6 fungal-type DNA-binding domain profile.","id":"PS50048","interpro_description":"Zn(2)Cys(6) fungal-type DNA-binding domain","interpro_id":"IPR001138","interpro_name":"Zn2Cys6_DnaBD","locations":[{"end":111,"start":81}],"match_end":111,"match_start":81,"name":"ZN2_CY6_FUNGAL_2"},{"dbname":"SMART","id":"SM00906","interpro_description":"Xylanolytic transcriptional activator, regulatory domain","interpro_id":"IPR007219","interpro_name":"XnlR_reg_dom","locations":[{"end":634,"start":551}],"match_end":634,"match_start":551,"name":"Fungal_trans_2"},{"dbname":"SMART","id":"SM00066","interpro_description":"Zn(2)Cys(6) fungal-type DNA-binding domain","interpro_id":"IPR001138","interpro_name":"Zn2Cys6_DnaBD","locations":[{"end":120,"start":76}],"match_end":120,"match_start":76,"name":"gal4_2"},{"dbname":"PRINTS","description":"Aflatoxin biosynthesis regulatory protein signature","id":"PR00755","locations":[{"end":92,"start":73},{"end":116,"start":94}],"match_end":116,"match_start":73,"name":"AFLATOXINBRP"},{"dbname":"SUPERFAMILY","id":"SSF57701","interpro_description":"Zn(2)-C6 fungal-type DNA-binding domain superfamily","interpro_id":"IPR036864","interpro_name":"Zn2-C6_fun-type_DNA-bd_sf","locations":[{"end":119,"start":72}],"match_end":119,"match_start":72,"name":"Zn2/Cys6 DNA-binding domain"},{"dbname":"GENE3D","id":"G3DSA:4.10.240.10","interpro_description":"Zn(2)-C6 fungal-type DNA-binding domain superfamily","interpro_id":"IPR036864","interpro_name":"Zn2-C6_fun-type_DNA-bd_sf","locations":[{"end":138,"start":73}],"match_end":138,"match_start":73},{"dbname":"PANTHER","id":"PTHR47338","interpro_description":"Transcription factor, fungi","interpro_id":"IPR050815","interpro_name":"TF_fung","locations":[{"end":996,"start":49}],"match_end":996,"match_start":49,"name":"ZN(II)2CYS6 TRANSCRIPTION FACTOR (EUROFUNG)-RELATED"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":75,"start":1},{"end":152,"start":126},{"end":237,"start":182},{"end":419,"start":391}],"match_end":419,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":48,"start":15},{"end":235,"start":217}],"match_end":235,"match_start":15,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":419,"start":410}],"match_end":419,"match_start":410,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3488163,"start_pos":3485137,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":28,"start":14}},{"range":{"end":47,"start":34}},{"range":{"end":138,"start":117}},{"range":{"end":165,"start":156}},{"range":{"end":234,"start":208}},{"range":{"end":265,"start":247}},{"range":{"end":331,"start":322}},{"range":{"end":539,"start":528}}],"ortholog_annotations":[{"gene_uniquename":"SJAG_03918","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC1327.01c","reference_uniquename":"PMID:21511999"}],"product":"DNA-binding transcription factor, zf-fungal binuclear cluster type","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"PMID:21511999":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0000978","GO:0008270"],"not-binding":["GO:0000981"]}},"subset_termids":["GO:0006355","GO:0003700","GO:0005634","GO:0006351"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000978":null,"GO:0000981":null,"GO:0005634":null,"GO:0005737":null,"GO:0006357":null,"GO:0008270":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03918.1"],"transcripts_by_uniquename":{"SJAG_03918.1":null},"uniprot_identifier":"B6K5E3","uniquename":"SJAG_03918"}


id: SJAG_03919
data:
  {"cv_annotations":{"biological_process":[{"annotations":[72213],"is_not":false,"summary":null,"term":"GO:0002181"}],"cellular_component":[{"annotations":[72214],"is_not":false,"summary":null,"term":"GO:0022625"},{"annotations":[119432],"is_not":false,"summary":null,"term":"GO:0005730"},{"annotations":[119436],"is_not":false,"summary":null,"term":"GO:0030684"}],"molecular_function":[{"annotations":[72215],"is_not":false,"summary":null,"term":"GO:0003723"},{"annotations":[72216],"is_not":false,"summary":null,"term":"GO:0003735"}],"mondo":[{"annotations":[87728],"is_not":false,"summary":null,"term":"MONDO:0014245"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_03919","InterPro:IPR020925","GOA:B6K5E4","InterPro:IPR024794","EnsemblGenomes-Tr:EEB08748","UniProtKB/TrEMBL:B6K5E4","InterPro:IPR012678","InterPro:IPR000439"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":187,"start":168}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"oxs1","uniquename":"SJAG_03924"},{"name":"dbl8","uniquename":"SJAG_03923"},{"name":"rpl24b","uniquename":"SJAG_03922"},{"name":"rpc37","uniquename":"SJAG_03921"},{"name":"sdh3","uniquename":"SJAG_03920"},{"name":"rpl15b","uniquename":"SJAG_03919"},{"uniquename":"SJAG_03918"},{"name":"chp1","uniquename":"SJAG_03916"},{"name":"ypt3","uniquename":"SJAG_03915"},{"name":"shm2","uniquename":"SJAG_03914"},{"name":"tpt1","uniquename":"SJAG_03913"}],"genes_by_uniquename":{"HGNC:10306":null,"SJAG_03919":null,"SPAC1783.08c":null,"SPCC576.11":null,"YLR029C":null,"YMR121C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Ribosomal L15","id":"PF00827","interpro_description":"Large ribosomal subunit protein eL15","interpro_id":"IPR000439","interpro_name":"Ribosomal_eL15","locations":[{"end":184,"start":2}],"match_end":184,"match_start":2,"name":"Ribosomal_L15e"},{"dbname":"PROSITE_PATTERNS","description":"Ribosomal protein L15e signature.","id":"PS01194","interpro_description":"Large ribosomal subunit protein eL15, conserved site","interpro_id":"IPR020925","interpro_name":"Ribosomal_eL15_CS","locations":[{"end":69,"start":46}],"match_end":69,"match_start":46,"name":"RIBOSOMAL_L15E"},{"dbname":"SMART","id":"SM01384","interpro_description":"Large ribosomal subunit protein eL15","interpro_id":"IPR000439","interpro_name":"Ribosomal_eL15","locations":[{"end":191,"start":2}],"match_end":191,"match_start":2,"name":"Ribosomal_L15e_2"},{"dbname":"FUNFAM","description":"Ribosomal protein L15","id":"G3DSA:3.40.1120.10:FF:000001","locations":[{"end":201,"start":1}],"match_end":201,"match_start":1},{"dbname":"SUPERFAMILY","id":"SSF54189","interpro_description":"Ribosomal protein uL23/eL15/eS24 core domain superfamily","interpro_id":"IPR012678","interpro_name":"Ribosomal_uL23/eL15/eS24_sf","locations":[{"end":186,"start":1}],"match_end":186,"match_start":1,"name":"Ribosomal proteins S24e, L23 and L15e"},{"dbname":"GENE3D","id":"G3DSA:3.40.1120.10","interpro_description":"Large ribosomal subunit protein eL15 core domain superfamily","interpro_id":"IPR024794","interpro_name":"Rbsml_eL15_core_dom_sf","locations":[{"end":201,"start":1}],"match_end":201,"match_start":1,"name":"Ribosomal protein l15e"},{"dbname":"PANTHER","id":"PTHR11847","interpro_description":"Large ribosomal subunit protein eL15","interpro_id":"IPR000439","interpro_name":"Ribosomal_eL15","locations":[{"end":201,"start":1}],"match_end":201,"match_start":1,"name":"RIBOSOMAL PROTEIN L15"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":187,"start":168}],"match_end":187,"match_start":168,"name":"disorder_prediction"},{"dbname":"MOBIDB-Positive-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Positive-Polyelectrolyte","locations":[{"end":187,"start":169}],"match_end":187,"match_start":169,"name":"disorder_prediction"},{"dbname":"NCBIFAM","description":"50S ribosomal protein L15e","id":"NF003269","locations":[{"end":183,"start":2}],"match_end":183,"match_start":2,"name":"PRK04243.1"}],"location":{"chromosome_name":"supercont5.2","end_pos":3483997,"start_pos":3483392,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":77,"start":57}},{"range":{"end":179,"start":165}}],"name":"rpl15b","ortholog_annotations":[{"gene_uniquename":"SJAG_03919","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10306","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03919","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10306","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03919","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC1783.08c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03919","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC576.11","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03919","ortholog_taxonid":4932,"ortholog_uniquename":"YLR029C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03919","ortholog_taxonid":4932,"ortholog_uniquename":"YLR029C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03919","ortholog_taxonid":4932,"ortholog_uniquename":"YMR121C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03919","ortholog_taxonid":4932,"ortholog_uniquename":"YMR121C","reference_uniquename":"PMID:29761456"}],"product":"60S ribosomal protein L15","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003723"],"not-binding":["GO:0003735"]}},"subset_termids":["GO:0005730","GO:0005634","MONDO:0005570","GO:0022626","GO:0005829","GO:0030684","GO:0002181","GO:0005198","MONDO:0002280"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0002181":null,"GO:0003723":null,"GO:0003735":null,"GO:0005730":null,"GO:0022625":null,"GO:0030684":null,"MONDO:0014245":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03919.1"],"transcripts_by_uniquename":{"SJAG_03919.1":null},"uniprot_identifier":"B6K5E4","uniquename":"SJAG_03919"}


id: SJAG_03920
data:
  {"alleles_by_uniquename":{"SJAG_03920:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03920","name":"sdh3delta","uniquename":"SJAG_03920:allele-1"}},"cv_annotations":{"biological_process":[{"annotations":[118755],"is_not":false,"summary":null,"term":"GO:0006121"},{"annotations":[118756],"is_not":false,"summary":null,"term":"GO:0019643"},{"annotations":[63681],"is_not":false,"summary":null,"term":"GO:0006099"}],"cellular_component":[{"annotations":[118752],"is_not":false,"summary":null,"term":"GO:0005743"},{"annotations":[76514],"is_not":false,"summary":null,"term":"GO:0045273"}],"molecular_function":[{"annotations":[63679],"is_not":false,"summary":null,"term":"GO:0009055"},{"annotations":[118759],"is_not":false,"summary":null,"term":"GO:0043495"}],"mondo":[{"annotations":[87316],"is_not":false,"summary":null,"term":"MONDO:0011740"},{"annotations":[88734],"is_not":false,"summary":null,"term":"MONDO:0011719"},{"annotations":[88864],"is_not":false,"summary":null,"term":"MONDO:0011544"}],"single_locus_phenotype":[{"annotations":[121562],"is_not":false,"summary":null,"term":"FYPO:0002058"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_03920","EnsemblGenomes-Tr:EEB08749","GOA:B6K5E5","UniProtKB/TrEMBL:B6K5E5","InterPro:IPR000701","InterPro:IPR014314","InterPro:IPR034804"],"deletion_viability":"unknown","feature_publications":[{"reference_uniquename":"PMID:37164017","source":"canto"}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"atp7","uniquename":"SJAG_03925"},{"name":"oxs1","uniquename":"SJAG_03924"},{"name":"dbl8","uniquename":"SJAG_03923"},{"name":"rpl24b","uniquename":"SJAG_03922"},{"name":"rpc37","uniquename":"SJAG_03921"},{"name":"sdh3","uniquename":"SJAG_03920"},{"name":"rpl15b","uniquename":"SJAG_03919"},{"uniquename":"SJAG_03918"},{"name":"chp1","uniquename":"SJAG_03916"},{"name":"ypt3","uniquename":"SJAG_03915"},{"name":"shm2","uniquename":"SJAG_03914"}],"genes_by_uniquename":{"HGNC:10682":null,"SJAG_03920":null,"SPCC330.12c":null,"YKL141W":null,"YMR118C":null},"genotypes_by_uniquename":{"sdh3delta":{"display_name":"sdh3delta","display_uniquename":"sdh3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03920:allele-1","expression":"Null"}]}]}},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Succinate dehydrogenase/Fumarate reductase transmembrane subunit","id":"PF01127","interpro_description":"Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit","interpro_id":"IPR000701","interpro_name":"SuccDH_FuR_B_TM-su","locations":[{"end":173,"start":53}],"match_end":173,"match_start":53,"name":"Sdh_cyt"},{"dbname":"CDD","description":"SQR_TypeC_SdhC","id":"cd03499","interpro_description":"Succinate dehydrogenase, cytochrome b556 subunit","interpro_id":"IPR014314","interpro_name":"Succ_DH_cytb556","locations":[{"end":177,"start":56}],"match_end":177,"match_start":56,"name":"SQR_TypeC_SdhC"},{"dbname":"SUPERFAMILY","id":"SSF81343","interpro_description":"Fumarate reductase/succinate dehydrogenase, transmembrane subunit","interpro_id":"IPR034804","interpro_name":"SQR/QFR_C/D","locations":[{"end":176,"start":51}],"match_end":176,"match_start":51,"name":"Fumarate reductase respiratory complex transmembrane subunits"},{"dbname":"GENE3D","id":"G3DSA:1.20.1300.10","interpro_description":"Fumarate reductase/succinate dehydrogenase, transmembrane subunit","interpro_id":"IPR034804","interpro_name":"SQR/QFR_C/D","locations":[{"end":178,"start":38}],"match_end":178,"match_start":38,"name":"Fumarate reductase/succinate dehydrogenase, transmembrane subunit"},{"dbname":"PANTHER","id":"PTHR10978","interpro_description":"Succinate dehydrogenase, cytochrome b556 subunit","interpro_id":"IPR014314","interpro_name":"Succ_DH_cytb556","locations":[{"end":176,"start":31}],"match_end":176,"match_start":31,"name":"SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT"},{"dbname":"NCBIFAM","description":"succinate dehydrogenase, cytochrome b556 subunit","id":"TIGR02970","interpro_description":"Succinate dehydrogenase, cytochrome b556 subunit","interpro_id":"IPR014314","interpro_name":"Succ_DH_cytb556","locations":[{"end":175,"start":55}],"match_end":175,"match_start":55,"name":"succ_dehyd_cytB"}],"location":{"chromosome_name":"supercont5.2","end_pos":3483112,"start_pos":3482576,"strand":"forward"},"name":"sdh3","ortholog_annotations":[{"gene_uniquename":"SJAG_03920","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10682","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03920","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC330.12c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03920","ortholog_taxonid":4932,"ortholog_uniquename":"YKL141W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03920","ortholog_taxonid":4932,"ortholog_uniquename":"YKL141W","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03920","ortholog_taxonid":4932,"ortholog_uniquename":"YMR118C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03920","ortholog_taxonid":4932,"ortholog_uniquename":"YMR118C","reference_uniquename":"PMID:26896847"}],"product":"succinate dehydrogenase (ubiquinone) cytochrome b subunit","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null,"PMID:37164017":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0043495","GO:0009055"]},"single_locus_phenotype":{"population_phenotype":["FYPO:0002058"]}},"subset_termids":["GO:0006091","FYPO:0002058","GO:0060090","GO:0005739","MONDO:0004335"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYPO:0002058":null,"GO:0005743":null,"GO:0006099":null,"GO:0006121":null,"GO:0009055":null,"GO:0019643":null,"GO:0043495":null,"GO:0045273":null,"MONDO:0011544":null,"MONDO:0011719":null,"MONDO:0011740":null},"tm_domain_coords":[{"assigned_by":"TMHMM","range":{"end":103,"start":81}},{"assigned_by":"TMHMM","range":{"end":145,"start":123}},{"assigned_by":"TMHMM","range":{"end":177,"start":158}}],"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03920.1"],"transcripts_by_uniquename":{"SJAG_03920.1":null},"uniprot_identifier":"B6K5E5","uniquename":"SJAG_03920"}


id: SJAG_03921
data:
  {"cv_annotations":{"biological_process":[{"annotations":[118764],"is_not":false,"summary":null,"term":"GO:0006383"}],"cellular_component":[{"annotations":[118760],"is_not":false,"summary":null,"term":"GO:0000785"},{"annotations":[118761],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[118763],"is_not":false,"summary":null,"term":"GO:0005666"}],"molecular_function":[{"annotations":[118765],"is_not":false,"summary":null,"term":"GO:0003899"}]},"dbxrefs":["InterPro:IPR006886","GOA:B6K5E6","UniProtKB/TrEMBL:B6K5E6","EnsemblGenomes-Tr:EEB08750","EnsemblGenomes-Gn:SJAG_03921"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":25,"start":1}},{"range":{"end":174,"start":154}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rec8","uniquename":"SJAG_03926"},{"name":"atp7","uniquename":"SJAG_03925"},{"name":"oxs1","uniquename":"SJAG_03924"},{"name":"dbl8","uniquename":"SJAG_03923"},{"name":"rpl24b","uniquename":"SJAG_03922"},{"name":"rpc37","uniquename":"SJAG_03921"},{"name":"sdh3","uniquename":"SJAG_03920"},{"name":"rpl15b","uniquename":"SJAG_03919"},{"uniquename":"SJAG_03918"},{"name":"chp1","uniquename":"SJAG_03916"},{"name":"ypt3","uniquename":"SJAG_03915"}],"genes_by_uniquename":{"HGNC:30347":null,"SJAG_03921":null,"SPCC330.13":null,"YKR025W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"RPC5 protein","id":"PF04801","interpro_description":"DNA-directed RNA polymerase III subunit Rpc5","interpro_id":"IPR006886","interpro_name":"RNA_pol_III_Rpc5","locations":[{"end":219,"start":26}],"match_end":219,"match_start":26,"name":"RPC5"},{"dbname":"PANTHER","id":"PTHR12069","interpro_description":"DNA-directed RNA polymerase III subunit Rpc5","interpro_id":"IPR006886","interpro_name":"RNA_pol_III_Rpc5","locations":[{"end":211,"start":19}],"match_end":211,"match_start":19,"name":"DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE  RNA POLYMERASE III SUBUNIT 5"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":25,"start":1},{"end":174,"start":154}],"match_end":174,"match_start":1,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3482254,"start_pos":3481538,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":180,"start":167}}],"name":"rpc37","ortholog_annotations":[{"gene_uniquename":"SJAG_03921","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:30347","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03921","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC330.13","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03921","ortholog_taxonid":4932,"ortholog_uniquename":"YKR025W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03921","ortholog_taxonid":4932,"ortholog_uniquename":"YKR025W","reference_uniquename":"PMID:26896847"}],"product":"DNA-directed RNA polymerase III complex subunit Rpc37","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0003899"]}},"subset_termids":["GO:0016779","GO:0005829","GO:0140098","GO:0005634","GO:0006351","GO:0005694"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000785":null,"GO:0003899":null,"GO:0005666":null,"GO:0005829":null,"GO:0006383":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03921.1"],"transcripts_by_uniquename":{"SJAG_03921.1":null},"uniprot_identifier":"B6K5E6","uniquename":"SJAG_03921"}


id: SJAG_03922
data:
  {"cv_annotations":{"biological_process":[{"annotations":[78081],"is_not":false,"summary":null,"term":"GO:0002181"},{"annotations":[65872],"is_not":false,"summary":null,"term":"GO:0006414"}],"cellular_component":[{"annotations":[78082],"is_not":false,"summary":null,"term":"GO:0022625"}],"molecular_function":[{"annotations":[78083],"is_not":false,"summary":null,"term":"GO:0003729"},{"annotations":[78084],"is_not":false,"summary":null,"term":"GO:0003735"}]},"dbxrefs":["GOA:B6K5E7","InterPro:IPR038630","EnsemblGenomes-Tr:EEB08751","EnsemblGenomes-Gn:SJAG_03922","InterPro:IPR000988","InterPro:IPR023442","UniProtKB/TrEMBL:B6K5E7"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":141,"start":93}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"orc1","uniquename":"SJAG_03927"},{"name":"rec8","uniquename":"SJAG_03926"},{"name":"atp7","uniquename":"SJAG_03925"},{"name":"oxs1","uniquename":"SJAG_03924"},{"name":"dbl8","uniquename":"SJAG_03923"},{"name":"rpl24b","uniquename":"SJAG_03922"},{"name":"rpc37","uniquename":"SJAG_03921"},{"name":"sdh3","uniquename":"SJAG_03920"},{"name":"rpl15b","uniquename":"SJAG_03919"},{"uniquename":"SJAG_03918"},{"name":"chp1","uniquename":"SJAG_03916"}],"genes_by_uniquename":{"HGNC:10325":null,"SJAG_03922":null,"SPAC6G9.09c":null,"SPCC330.14c":null,"YGL031C":null,"YGR148C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Ribosomal protein L24e","id":"PF01246","interpro_description":"Large ribosomal subunit protein eL24-related, N-terminal","interpro_id":"IPR000988","interpro_name":"Ribosomal_eL24-rel_N","locations":[{"end":65,"start":1}],"match_end":65,"match_start":1,"name":"Ribosomal_L24e"},{"dbname":"CDD","description":"Ribosomal_L24e_L24","id":"cd00472","interpro_description":"Large ribosomal subunit protein eL24-related, N-terminal","interpro_id":"IPR000988","interpro_name":"Ribosomal_eL24-rel_N","locations":[{"end":54,"start":1}],"match_end":54,"match_start":1,"name":"Ribosomal_L24e_L24"},{"dbname":"PROSITE_PATTERNS","description":"Ribosomal protein L24e signature.","id":"PS01073","interpro_description":"Large ribosomal subunit protein eL24, conserved site","interpro_id":"IPR023442","interpro_name":"Ribosomal_eL24_CS","locations":[{"end":25,"start":8}],"match_end":25,"match_start":8,"name":"RIBOSOMAL_L24E"},{"dbname":"FUNFAM","description":"60S ribosomal protein L24","id":"G3DSA:2.30.170.20:FF:000002","locations":[{"end":68,"start":1}],"match_end":68,"match_start":1},{"dbname":"SUPERFAMILY","id":"SSF57716","locations":[{"end":56,"start":4}],"match_end":56,"match_start":4,"name":"Glucocorticoid receptor-like (DNA-binding domain)"},{"dbname":"GENE3D","id":"G3DSA:6.10.250.1270","locations":[{"end":135,"start":69}],"match_end":135,"match_start":69},{"dbname":"GENE3D","id":"G3DSA:2.30.170.20","interpro_description":"Ribosomal protein L24e/L24 superfamily","interpro_id":"IPR038630","interpro_name":"L24e/L24_sf","locations":[{"end":68,"start":1}],"match_end":68,"match_start":1,"name":"Ribosomal protein L24e"},{"dbname":"PANTHER","id":"PTHR10792","interpro_description":"Large ribosomal subunit protein eL24","interpro_id":"IPR056366","interpro_name":"Ribosomal_eL24","locations":[{"end":133,"start":1}],"match_end":133,"match_start":1,"name":"60S RIBOSOMAL PROTEIN L24"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":141,"start":93}],"match_end":141,"match_start":93,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":102,"start":93}],"match_end":102,"match_start":93,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3481355,"start_pos":3480930,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":134,"start":101}}],"name":"rpl24b","ortholog_annotations":[{"gene_uniquename":"SJAG_03922","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10325","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03922","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10325","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03922","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC6G9.09c","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03922","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC330.14c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03922","ortholog_taxonid":4932,"ortholog_uniquename":"YGL031C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03922","ortholog_taxonid":4932,"ortholog_uniquename":"YGL031C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03922","ortholog_taxonid":4932,"ortholog_uniquename":"YGL031C","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_03922","ortholog_taxonid":4932,"ortholog_uniquename":"YGR148C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03922","ortholog_taxonid":4932,"ortholog_uniquename":"YGR148C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03922","ortholog_taxonid":4932,"ortholog_uniquename":"YGR148C","reference_uniquename":"PMID:26896847"}],"product":"60S ribosomal protein L24","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000117":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003729"],"not-binding":["GO:0003735"]}},"subset_termids":["GO:0005829","GO:0002181","GO:0005198","GO:0022626"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0002181":null,"GO:0003729":null,"GO:0003735":null,"GO:0006414":null,"GO:0022625":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03922.1"],"transcripts_by_uniquename":{"SJAG_03922.1":null},"uniprot_identifier":"B6K5E7","uniquename":"SJAG_03922"}


id: SJAG_03923
data:
  {"coiled_coil_coords":[{"range":{"end":1438,"start":1418}},{"range":{"end":1476,"start":1449}}],"cv_annotations":{"biological_process":[{"annotations":[109765],"is_not":false,"summary":null,"term":"GO:0031123"},{"annotations":[76288],"is_not":false,"summary":null,"term":"GO:0006369"},{"annotations":[109767],"is_not":false,"summary":null,"term":"GO:0006399"}],"cellular_component":[{"annotations":[76287],"is_not":false,"summary":null,"term":"GO:0016604"},{"annotations":[109762],"is_not":false,"summary":null,"term":"GO:0030874"},{"annotations":[109764],"is_not":false,"summary":null,"term":"GO:0035861"}],"molecular_function":[{"annotations":[63362],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[109769],"is_not":false,"summary":null,"term":"GO:0016887"},{"annotations":[76290],"is_not":false,"summary":null,"term":"GO:0003723"},{"annotations":[109771],"is_not":false,"summary":null,"term":"GO:0003724"},{"annotations":[76289],"is_not":false,"summary":null,"term":"GO:0001147"}],"mondo":[{"annotations":[88434],"is_not":false,"summary":null,"term":"MONDO:0011223"},{"annotations":[88537],"is_not":false,"summary":null,"term":"MONDO:0018996"}]},"dbxrefs":["InterPro:IPR024481","InterPro:IPR027417","EnsemblGenomes-Gn:SJAG_03923","GOA:B6K5E8","UniProtKB/TrEMBL:B6K5E8","EnsemblGenomes-Tr:EEB08752","InterPro:IPR041677","InterPro:IPR041679"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":1004,"start":956}},{"range":{"end":1974,"start":1797}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"lam1","uniquename":"SJAG_03928"},{"name":"orc1","uniquename":"SJAG_03927"},{"name":"rec8","uniquename":"SJAG_03926"},{"name":"atp7","uniquename":"SJAG_03925"},{"name":"oxs1","uniquename":"SJAG_03924"},{"name":"dbl8","uniquename":"SJAG_03923"},{"name":"rpl24b","uniquename":"SJAG_03922"},{"name":"rpc37","uniquename":"SJAG_03921"},{"name":"sdh3","uniquename":"SJAG_03920"},{"name":"rpl15b","uniquename":"SJAG_03919"},{"uniquename":"SJAG_03918"}],"genes_by_uniquename":{"HGNC:445":null,"SJAG_03923":null,"SPBC29A10.10c":null,"YLR430W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"AAA domain","id":"PF13086","interpro_description":"DNA2/NAM7 helicase, helicase domain","interpro_id":"IPR041677","interpro_name":"DNA2/NAM7_AAA_11","locations":[{"end":1557,"start":1272}],"match_end":1557,"match_start":1272,"name":"AAA_11"},{"dbname":"PFAM","description":"Helicase SEN1 beta-barrel domain","id":"PF23576","interpro_description":"Helicase SEN1, beta-barrel domain","interpro_id":"IPR056474","interpro_name":"SEN1_barrel","locations":[{"end":1221,"start":1123}],"match_end":1221,"match_start":1123,"name":"SEN1_barrel"},{"dbname":"PFAM","description":"SEN1 N terminal","id":"PF12726","interpro_description":"Helicase Sen1, N-terminal","interpro_id":"IPR024481","interpro_name":"Helicase_Sen1_N","locations":[{"end":761,"start":78}],"match_end":761,"match_start":78,"name":"SEN1_N"},{"dbname":"PFAM","description":"AAA domain","id":"PF13087","interpro_description":"DNA2/NAM7 helicase-like, C-terminal","interpro_id":"IPR041679","interpro_name":"DNA2/NAM7-like_C","locations":[{"end":1758,"start":1564}],"match_end":1758,"match_start":1564,"name":"AAA_12"},{"dbname":"CDD","description":"DEXXQc_SETX","id":"cd18042","locations":[{"end":1588,"start":1274}],"match_end":1588,"match_start":1274,"name":"DEXXQc_SETX"},{"dbname":"CDD","description":"SF1_C_Upf1","id":"cd18808","interpro_description":"Upf1-like, C-terminal helicase domain","interpro_id":"IPR047187","interpro_name":"SF1_C_Upf1","locations":[{"end":1776,"start":1589}],"match_end":1776,"match_start":1589,"name":"SF1_C_Upf1"},{"dbname":"FUNFAM","description":"P-loop containing nucleoside triphosphate hydrolase","id":"G3DSA:3.40.50.300:FF:000326","locations":[{"end":1791,"start":1587}],"match_end":1791,"match_start":1587},{"dbname":"SUPERFAMILY","id":"SSF52540","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":1359,"start":1272},{"end":1781,"start":1406}],"match_end":1781,"match_start":1272,"name":"P-loop containing nucleoside triphosphate hydrolases"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.300","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":1796,"start":1215}],"match_end":1796,"match_start":1215},{"dbname":"PANTHER","id":"PTHR10887","interpro_description":"DNA2/NAM7-like helicase","interpro_id":"IPR045055","interpro_name":"DNA2/NAM7-like","locations":[{"end":1883,"start":791}],"match_end":1883,"match_start":791,"name":"DNA2/NAM7 HELICASE FAMILY"},{"dbname":"COILS","id":"Coil","locations":[{"end":1438,"start":1418},{"end":1476,"start":1449}],"match_end":1476,"match_start":1418,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":1004,"start":956},{"end":1974,"start":1797}],"match_end":1974,"match_start":956,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":989,"start":980},{"end":1835,"start":1797}],"match_end":1835,"match_start":980,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":1857,"start":1837},{"end":1913,"start":1897}],"match_end":1913,"match_start":1837,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":1881,"start":1863},{"end":1974,"start":1964}],"match_end":1974,"match_start":1863,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3480611,"start_pos":3474596,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":498,"start":482}},{"range":{"end":543,"start":529}},{"range":{"end":731,"start":715}},{"range":{"end":991,"start":979}},{"range":{"end":1803,"start":1791}},{"range":{"end":1834,"start":1807}},{"range":{"end":1873,"start":1861}},{"range":{"end":1955,"start":1944}}],"name":"dbl8","ortholog_annotations":[{"gene_uniquename":"SJAG_03923","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:445","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03923","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC29A10.10c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03923","ortholog_taxonid":4932,"ortholog_uniquename":"YLR430W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03923","ortholog_taxonid":4932,"ortholog_uniquename":"YLR430W","reference_uniquename":"PMID:26896847"}],"product":"ATP-dependent RNA helicase senataxin-like Dbl8","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524","GO:0003723","GO:0001147"],"not-binding":["GO:0003724","GO:0016887"]}},"subset_termids":["GO:0005730","GO:0006351","GO:0016853","MONDO:0005244","MONDO:0021190","MONDO:0005559","GO:0016887","MONDO:0005066","GO:0005694","GO:0005634","MONDO:0006025","GO:0005654","GO:0006399","GO:0140098"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0001147":null,"GO:0003723":null,"GO:0003724":null,"GO:0005524":null,"GO:0006369":null,"GO:0006399":null,"GO:0016604":null,"GO:0016887":null,"GO:0030874":null,"GO:0031123":null,"GO:0035861":null,"MONDO:0011223":null,"MONDO:0018996":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03923.1"],"transcripts_by_uniquename":{"SJAG_03923.1":null},"uniprot_identifier":"B6K5E8","uniquename":"SJAG_03923"}


id: SJAG_03924
data:
  {"coiled_coil_coords":[{"range":{"end":31,"start":11}},{"range":{"end":72,"start":38}}],"cv_annotations":{"biological_process":[{"annotations":[109776],"is_not":false,"summary":null,"term":"GO:0034599"},{"annotations":[77191],"is_not":false,"summary":null,"term":"GO:0006366"}],"cellular_component":[{"annotations":[109774],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[77190],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[77192],"is_not":false,"summary":null,"term":"GO:0003713"}]},"dbxrefs":["UniProtKB/TrEMBL:B6K5E9","EnsemblGenomes-Gn:SJAG_03924","EnsemblGenomes-Tr:EEB08753","InterPro:IPR010422","GOA:B6K5E9"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":90,"start":1}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"cyb502","uniquename":"SJAG_03929"},{"name":"lam1","uniquename":"SJAG_03928"},{"name":"orc1","uniquename":"SJAG_03927"},{"name":"rec8","uniquename":"SJAG_03926"},{"name":"atp7","uniquename":"SJAG_03925"},{"name":"oxs1","uniquename":"SJAG_03924"},{"name":"dbl8","uniquename":"SJAG_03923"},{"name":"rpl24b","uniquename":"SJAG_03922"},{"name":"rpc37","uniquename":"SJAG_03921"},{"name":"sdh3","uniquename":"SJAG_03920"},{"name":"rpl15b","uniquename":"SJAG_03919"}],"genes_by_uniquename":{"HGNC:25171":null,"SJAG_03924":null,"SPBC29A10.12":null,"YGR169C-A":null,"YJR005C-A":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"LSO1/2-like","id":"PF22048","interpro_description":"LSO1/LSO2","interpro_id":"IPR054413","interpro_name":"LSO1/2","locations":[{"end":68,"start":8}],"match_end":68,"match_start":8,"name":"LSO1_2-like"},{"dbname":"PFAM","description":"Coiled-coil domain-containing protein 124 /Oxs1","id":"PF06244","interpro_description":"Coiled-coil domain-containing protein 124/Oxs1, C-terminal","interpro_id":"IPR054414","interpro_name":"Ccdc124/Oxs1_C","locations":[{"end":170,"start":93}],"match_end":170,"match_start":93,"name":"Ccdc124"},{"dbname":"PANTHER","id":"PTHR21680","interpro_description":"Coiled-coil domain-containing protein 124/Oxs1","interpro_id":"IPR010422","interpro_name":"Ccdc124/Oxs1","locations":[{"end":180,"start":94}],"match_end":180,"match_start":94,"name":"COILED-COIL DOMAIN-CONTAINING PROTEIN 124"},{"dbname":"COILS","id":"Coil","locations":[{"end":31,"start":11},{"end":72,"start":38}],"match_end":72,"match_start":11,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":90,"start":1}],"match_end":90,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":35,"start":9},{"end":66,"start":43}],"match_end":66,"match_start":9,"name":"disorder_prediction"},{"dbname":"MOBIDB-Positive-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Positive-Polyelectrolyte","locations":[{"end":84,"start":75}],"match_end":84,"match_start":75,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.2","end_pos":3472440,"start_pos":3471789,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":19,"start":4}},{"range":{"end":67,"start":41}},{"range":{"end":117,"start":99}},{"range":{"end":198,"start":176}}],"name":"oxs1","ortholog_annotations":[{"gene_uniquename":"SJAG_03924","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:25171","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03924","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC29A10.12","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03924","ortholog_taxonid":4932,"ortholog_uniquename":"YGR169C-A","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03924","ortholog_taxonid":4932,"ortholog_uniquename":"YJR005C-A","reference_uniquename":"PMID:29761456"}],"product":"oxidative stress transcription coactivator/ribosome recycling protein Oxs1","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0003713"]}},"subset_termids":["GO:0005829","GO:0005634","GO:0003713","GO:0003712","GO:0060090","GO:0006351"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0003713":null,"GO:0005634":null,"GO:0005829":null,"GO:0006366":null,"GO:0034599":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03924.1"],"transcripts_by_uniquename":{"SJAG_03924.1":null},"uniprot_identifier":"B6K5E9","uniquename":"SJAG_03924"}


id: SJAG_03925
data:
  {"cv_annotations":{"biological_process":[{"annotations":[109783],"is_not":false,"summary":null,"term":"GO:0042776"},{"annotations":[60561],"is_not":false,"summary":null,"term":"GO:1902600"}],"cellular_component":[{"annotations":[109780],"is_not":false,"summary":null,"term":"GO:0099617"},{"annotations":[60558],"is_not":false,"summary":null,"term":"GO:0045259"}],"molecular_function":[{"annotations":[109785],"is_not":false,"summary":null,"term":"GO:0046933"},{"annotations":[109786],"is_not":false,"summary":null,"term":"GO:0005198"}]},"dbxrefs":["GOA:B6K5F0","InterPro:IPR036228","InterPro:IPR008689","UniProtKB/TrEMBL:B6K5F0","EnsemblGenomes-Gn:SJAG_03925","EnsemblGenomes-Tr:EEB08754"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_03930"},{"name":"cyb502","uniquename":"SJAG_03929"},{"name":"lam1","uniquename":"SJAG_03928"},{"name":"orc1","uniquename":"SJAG_03927"},{"name":"rec8","uniquename":"SJAG_03926"},{"name":"atp7","uniquename":"SJAG_03925"},{"name":"oxs1","uniquename":"SJAG_03924"},{"name":"dbl8","uniquename":"SJAG_03923"},{"name":"rpl24b","uniquename":"SJAG_03922"},{"name":"rpc37","uniquename":"SJAG_03921"},{"name":"sdh3","uniquename":"SJAG_03920"}],"genes_by_uniquename":{"HGNC:845":null,"SJAG_03925":null,"SPBC29A10.13":null,"YKL016C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"ATP synthase D chain, mitochondrial (ATP5H)","id":"PF05873","interpro_description":"ATP synthase, F0 complex, subunit D, mitochondrial","interpro_id":"IPR008689","interpro_name":"ATP_synth_F0_dsu_mt","locations":[{"end":143,"start":9}],"match_end":143,"match_start":9,"name":"Mt_ATP-synt_D"},{"dbname":"SUPERFAMILY","id":"SSF161065","interpro_description":"ATP synthase, F0 complex, subunit D superfamily, mitochondrial","interpro_id":"IPR036228","interpro_name":"ATP_synth_F0_dsu_sf_mt","locations":[{"end":124,"start":8}],"match_end":124,"match_start":8,"name":"ATP synthase D chain-like"},{"dbname":"GENE3D","id":"G3DSA:6.10.280.70","interpro_description":"ATP synthase, F0 complex, subunit D superfamily, mitochondrial","interpro_id":"IPR036228","interpro_name":"ATP_synth_F0_dsu_sf_mt","locations":[{"end":125,"start":4}],"match_end":125,"match_start":4},{"dbname":"PANTHER","id":"PTHR12700","interpro_description":"ATP synthase, F0 complex, subunit D, mitochondrial","interpro_id":"IPR008689","interpro_name":"ATP_synth_F0_dsu_mt","locations":[{"end":152,"start":6}],"match_end":152,"match_start":6,"name":"ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL"},{"dbname":"PIRSF","id":"PIRSF005514","interpro_description":"ATP synthase, F0 complex, subunit D, mitochondrial","interpro_id":"IPR008689","interpro_name":"ATP_synth_F0_dsu_mt","locations":[{"end":172,"start":3}],"match_end":172,"match_start":3,"name":"Mitoh_ATP-synt_D"}],"location":{"chromosome_name":"supercont5.2","end_pos":3471258,"start_pos":3470740,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":106,"start":91}}],"name":"atp7","ortholog_annotations":[{"gene_uniquename":"SJAG_03925","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:845","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03925","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC29A10.13","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_03925","ortholog_taxonid":4932,"ortholog_uniquename":"YKL016C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_03925","ortholog_taxonid":4932,"ortholog_uniquename":"YKL016C","reference_uniquename":"PMID:26896847"}],"product":"F1-FO ATP synthase peripheral stalk subunit d","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000043":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0005198","GO:0046933"]}},"subset_termids":["GO:0005739","GO:0005198","GO:0022857","GO:0055085","GO:0006091","GO:0016874","GO:0055086"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005198":null,"GO:0042776":null,"GO:0045259":null,"GO:0046933":null,"GO:0099617":null,"GO:1902600":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_03925.1"],"transcripts_by_uniquename":{"SJAG_03925.1":null},"uniprot_identifier":"B6K5F0","uniquename":"SJAG_03925"}


