# terms

id: MONDO:1010739
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"This disorder was engineered via the TALEN technology to create mutations in the RAG1 and/or RAG2 genes for the purpose of establishing a porcine model of SCID.","definition_xrefs":["OMIA:001574-9823"],"direct_ancestors":[{"relation_name":"is_a","term_name":"severe combined immunodeficiency disease, non-human animal","termid":"MONDO:1011422"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"severe combined immunodeficiency disease, pig","synonyms":[{"name":"T-B-NK+ SCID","type":"exact"}],"termid":"MONDO:1010739","xrefs":{"Monarch":{"xref_id":"1010739"}}}


id: GO:0006153
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete purine nucleosidase reaction (obsolete GO:0006153)","synonyms":[{"name":"purine nucleosidase reaction","type":"exact"}],"termid":"GO:0006153"}


id: GO:0031608
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The subunits forming the inner ring of the core complex of a proteasome located in the endoplasmic reticulum of a cell.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete ER proteasome core complex, beta-subunit complex (obsolete GO:0031608)","termid":"GO:0031608"}


id: PBO:0004660
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIRA Interacting Protein","termid":"PBO:0004660"}


id: MONDO:1012215
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"persistent right aortic arch, non-human animal","termid":"MONDO:1011644"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"persistent right aortic arch, horse","secondary_identifiers":["OMIA:000794-9796"],"termid":"MONDO:1012215","xrefs":{"Monarch":{"xref_id":"1012215"}}}


id: GO:0004460
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-lactate + 2 [Fe(III)cytochrome c] = 2 [Fe(II)cytochrome c] + 2 H+ + pyruvate.","definition_xrefs":["RHEA:19909"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor","termid":"GO:0016898"},{"relation_name":"is_a","term_name":"L-lactate dehydrogenase activity","termid":"GO:0140171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"L-lactate dehydrogenase (cytochrome) activity","secondary_identifiers":["EC:1.1.2.3","MetaCyc:L-LACTATE-DEHYDROGENASE-CYTOCHROME-RXN"],"synonyms":[{"name":"(S)-lactate:ferricytochrome-c 2-oxidoreductase activity","type":"related"},{"name":"L(+)-lactate:cytochrome c oxidoreductase activity","type":"related"},{"name":"L-lactate cytochrome c oxidoreductase activity","type":"related"},{"name":"L-lactate cytochrome c reductase activity","type":"related"},{"name":"L-lactate dehydrogenase activity","type":"broad"},{"name":"L-lactate ferricytochrome c oxidoreductase activity","type":"related"},{"name":"cytochrome b2","type":"related"},{"name":"cytochrome b2 (flavin-free derivative of flavocytochrome b2)","type":"related"},{"name":"dehydrogenase, lactate (cytochrome)","type":"related"},{"name":"flavocytochrome b2","type":"related"},{"name":"lactate dehydrogenase (cytochrome)","type":"related"},{"name":"lactic acid dehydrogenase activity","type":"broad"},{"name":"lactic cytochrome c reductase activity","type":"related"}],"termid":"GO:0004460"}


id: MONDO:0009237
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hyperplasia characterized by the presence of a focal proliferation of epithelial cells.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"hyperplasia","termid":"MONDO:0005043"},{"relation_name":"is_a","term_name":"viral infectious disease","termid":"MONDO:0005108"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"focal epithelial hyperplasia","secondary_identifiers":["DOID:5362","NCIT:C97083","SCTID:6121001","MEDGEN:60066","ICD9:528.79","MESH:D017573","EFO:0007275","OMIM:229045","UMLS:C0206067"],"synonyms":[{"name":"FEH, oral","type":"related"},{"name":"focal epithelial hyperplasia, oral","type":"related"},{"name":"heck disease","type":"exact"},{"name":"heck's disease","type":"exact"},{"name":"multifocal epithelial hyperplasia","type":"exact"}],"termid":"MONDO:0009237","xrefs":{"Monarch":{"xref_id":"0009237"}}}


id: GO:0018611
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: methylbenzoate + NADH + O2 + H+ = NAD+ + 1,2-dihydroxymethylcyclohexa-3,5-dienecarboxylate.","definition_xrefs":["UM-BBD_enzymeID:e0190"],"gene_count":0,"genotype_count":0,"name":"obsolete toluate dioxygenase activity (obsolete GO:0018611)","termid":"GO:0018611"}


id: GO:0001098
data:
  {"annotated_genes":["SJAG_01151","SJAG_04933","SJAG_00159","SJAG_03118","SJAG_01610","SJAG_00095","SJAG_04353","SJAG_00483","SJAG_02037","SJAG_00139","SJAG_00448"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[66563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099122"},{"annotations":[80075,74415],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990269"},{"annotations":[72985,74187,57814,78151,80518,80529],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000993"},{"annotations":[81083],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001096"},{"annotations":[78050],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001097"}]},"cv_name":"molecular_function","definition":"Binding to a component of the basal transcription machinery which is composed of the RNA polymerase core enzyme and the basal transcription factor(s), the minimal set of factors required for formation of the preinitiation complex (PIC) by the RNA polymerase.","definition_xrefs":["GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00095":null,"SJAG_00139":null,"SJAG_00159":null,"SJAG_00448":null,"SJAG_00483":null,"SJAG_01151":null,"SJAG_01610":null,"SJAG_02037":null,"SJAG_03118":null,"SJAG_04353":null,"SJAG_04933":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"basal transcription machinery binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"termid":"GO:0001098","terms_by_termid":{"GO:0000993":null,"GO:0001096":null,"GO:0001097":null,"GO:0099122":null,"GO:1990269":null}}


id: PBO:0054350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1743","termid":"PBO:0054350"}


id: GO:0009640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to red or far red light","termid":"GO:0009639"},{"relation_name":"is_a","term_name":"post-embryonic development","termid":"GO:0009791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"photomorphogenesis","secondary_identifiers":["Wikipedia:Photomorphogenesis"],"synonyms":[{"name":"plant development in response to light","type":"exact"}],"termid":"GO:0009640"}


id: PBO:0087869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional coactivator; bridges the DNA-binding region of Gcn4p and TATA-binding protein Spt15p; suppressor of frameshift mutations; protein abundance increases in response to DNA replication stress","termid":"PBO:0087869"}


id: PBO:0044397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily C member 58, pseudogene","termid":"PBO:0044397"}


id: MONDO:0000240
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An aspergillosis that is a serious fungal infection of the lung with pneumonia caused by Aspergillus, which spreads to other parts of the body through bloodstream in patients with acute leukemia and recipients of tissue transplants. Clinical symptoms include pulmonary nodules and hemorrhage.","definition_xrefs":["DOID:0050073"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pulmonary aspergilloma","termid":"MONDO:0000266"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"invasive aspergillosis","secondary_identifiers":["UMLS:C0238013","MEDGEN:922866","icd11.foundation:1314810340","SCTID:721798004"],"termid":"MONDO:0000240","xrefs":{"Monarch":{"xref_id":"0000240"}}}


id: PBO:0074014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 6 pseudogene 5","termid":"PBO:0074014"}


id: MONDO:0003045
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tumors or cancer of the anal gland.","definition_xrefs":["MESH:D000694"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anus neoplasm","termid":"MONDO:0003046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"anal gland neoplasm","secondary_identifiers":["DOID:4550","UMLS:C0002757","MEDGEN:1897"],"synonyms":[{"name":"gland of anal canal neoplasm","type":"exact"},{"name":"gland of anal canal neoplasm (disease)","type":"exact"},{"name":"gland of anal canal tumor","type":"exact"},{"name":"gland of anal canal tumour","type":"exact"},{"name":"neoplasm of gland of anal canal","type":"exact"},{"name":"tumor of gland of anal canal","type":"exact"},{"name":"tumour of gland of anal canal","type":"exact"}],"termid":"MONDO:0003045","xrefs":{"Monarch":{"xref_id":"0003045"}}}


id: PBO:0052865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 5-8","termid":"PBO:0052865"}


id: PBO:0044936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxyguanosine kinase","termid":"PBO:0044936"}


id: PR:O14094
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein prune that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01640","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exopolyphosphatase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2F3.11","secondary_identifiers":["UniProtKB:O14094"],"synonyms":[{"name":"ExopolyPase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Metaphosphatase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PRUNE","type":"exact"}],"termid":"PR:O14094"}


id: PBO:0091513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin fold protein Plp1","termid":"PBO:0091513"}


id: GO:0003143
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the embryonic heart tube are generated and organized. The embryonic heart tube is an epithelial tube that will give rise to the mature heart.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"is_a","term_name":"epithelial tube morphogenesis","termid":"GO:0060562"},{"relation_name":"part_of","term_name":"heart morphogenesis","termid":"GO:0003007"},{"relation_name":"part_of","term_name":"embryonic heart tube development","termid":"GO:0035050"},{"relation_name":"part_of","term_name":"embryonic organ morphogenesis","termid":"GO:0048562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic heart tube morphogenesis","termid":"GO:0003143"}


id: GO:1990389
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex capable of ubiquitin-conjugating enzyme activity during ER-associated protein degradation (ERAD). In S. cerevisiae, UBC7 is the ubiquitin-conjugating enzyme (E2) and requires binding to the ER surface by CUE1.","definition_xrefs":["GOC:bhm","PMID:23028185"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ER ubiquitin ligase complex","termid":"GO:0000835"},{"relation_name":"is_a","term_name":"ubiquitin conjugating enzyme complex","termid":"GO:0031371"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005789"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005783"}],"interesting_parent_ids":["GO:0005737","GO:0032991","GO:0005789","GO:0005783","GO:0005575"],"is_obsolete":false,"name":"CUE1-UBC7 ubiquitin-conjugating enzyme complex","synonyms":[{"name":"CUE1-UBC7 ubiquitin-conjugating enzyme (E2)","type":"exact"}],"termid":"GO:1990389"}


id: MONDO:1011811
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cancer or benign tumor, non-human animal","termid":"MONDO:1011305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital melanoma, non-human animal","secondary_identifiers":["OMIA:000634"],"termid":"MONDO:1011811","xrefs":{"Monarch":{"xref_id":"1011811"}}}


id: MONDO:0006172
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign melanocytic neoplasm that arises from the conjunctiva.","definition_xrefs":["NCIT:C4551"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melanocytic nevus","termid":"MONDO:0005073"},{"relation_name":"is_a","term_name":"benign conjunctival neoplasm","termid":"MONDO:0006105"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005093"],"is_obsolete":false,"name":"conjunctival nevus","secondary_identifiers":["DOID:0050906","EFO:1000205","MEDGEN:83422","SCTID:255006004","UMLS:C0346363"],"synonyms":[{"name":"Nevus of conjunctiva","type":"exact"},{"name":"Nevus of the conjunctiva","type":"exact"},{"name":"conjunctival nevus","type":"exact"}],"termid":"MONDO:0006172","xrefs":{"Monarch":{"xref_id":"0006172"}}}


id: GO:0038023
data:
  {"annotated_genes":["SJAG_01978","SJAG_02847","SJAG_01699","SJAG_02258","SJAG_02080","SJAG_01345","SJAG_02823","SJAG_02860"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74689,76070,107494],"is_not":false,"summary":null,"term":"GO:0038023"},{"annotations":[121172],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009882"},{"annotations":[117534],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990576"},{"annotations":[77275],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004932"},{"annotations":[90089],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036320"},{"annotations":[110425],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140897"}]},"cv_name":"molecular_function","definition":"Receiving a signal and transmitting it in the cell to initiate a change in cell activity. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.","definition_xrefs":["GOC:signaling","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular transducer activity","termid":"GO:0060089"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01345":null,"SJAG_01699":null,"SJAG_01978":null,"SJAG_02080":null,"SJAG_02258":null,"SJAG_02823":null,"SJAG_02847":null,"SJAG_02860":null},"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"signaling receptor activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:23873862":null},"secondary_identifiers":["GO:0004872","GO:0019041"],"synonyms":[{"name":"receptor activity","type":"broad"},{"name":"receptor activity involved in signal transduction","type":"exact"},{"name":"signalling receptor activity","type":"exact"}],"termid":"GO:0038023","terms_by_termid":{"GO:0004932":null,"GO:0009882":null,"GO:0036320":null,"GO:0038023":null,"GO:0140897":null,"GO:1990576":null}}


id: PBO:0075779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine and arginine rich splicing factor 5","termid":"PBO:0075779"}


id: PBO:0001452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cleavage and polyadenylation specificity factor (predicted)","termid":"PBO:0001452"}


id: GO:0051333
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which the reformation of the nuclear membranes during meiosis occurs.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear membrane reassembly","termid":"GO:0031468"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0061024","GO:0044085"],"is_obsolete":false,"name":"meiotic nuclear membrane reassembly","synonyms":[{"name":"meiotic nuclear envelope reassembly","type":"related"}],"termid":"GO:0051333"}


id: PBO:0044435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 4 subfamily A member 44, pseudogene","termid":"PBO:0044435"}


id: PBO:0044831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 118","termid":"PBO:0044831"}


id: MONDO:0017431
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete non-syndromic limb overgrowth (obsolete MONDO:0017431)","secondary_identifiers":["Orphanet:294953"],"synonyms":[{"name":"limb overgrowth","type":"related"}],"termid":"MONDO:0017431","xrefs":{"Monarch":{"xref_id":"0017431"}}}


id: PBO:0070922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 30","termid":"PBO:0070922"}


id: GO:1902456
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of stomatal opening.","definition_xrefs":["GOC:TermGenie","PMID:23766366"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of stomatal movement","termid":"GO:0010119"},{"relation_name":"regulates","term_name":"stomatal opening","termid":"GO:1990069"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of stomatal opening","termid":"GO:1902456"}


id: GO:0035550
data:
  {"annotated_genes":["SJAG_02766"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[59735],"is_not":false,"summary":null,"term":"GO:0035550"}]},"cv_name":"cellular_component","definition":"A multiprotein nickel-containing complex that possesses urease activity (catalysis of the hydrolysis of urea to ammonia and carbon dioxide).","definition_xrefs":["PMID:2651866","InterPro:IPR008221"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02766":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"urease complex","references_by_uniquename":{"GO_REF:0000002":null},"termid":"GO:0035550","terms_by_termid":{"GO:0035550":null}}


id: PATO:0000209
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000209 digestive function (obsolete PATO:0000209)","termid":"PATO:0000209"}


id: PBO:0031471
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_nickel","termid":"PBO:0031471"}


id: PBO:0004186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-ZnF type","termid":"PBO:0004186"}


id: PBO:0073731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 1 member 1","termid":"PBO:0073731"}


id: MONDO:0017660
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare genetic parkinsonian disorder (obsolete MONDO:0017660)","secondary_identifiers":["Orphanet:307052"],"synonyms":[{"name":"rare genetic hypokinetic movement disorder","type":"exact"}],"termid":"MONDO:0017660","xrefs":{"Monarch":{"xref_id":"0017660"}}}


id: MONDO:0008616
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete twinning due to superfetation (obsolete MONDO:0008616)","secondary_identifiers":["OMIM:191250","MESH:C566018"],"synonyms":[{"name":"superfetation twinning","type":"related"},{"name":"twinning due to superfetation","type":"exact"}],"termid":"MONDO:0008616","xrefs":{"Monarch":{"xref_id":"0008616"}}}


id: GO:0071635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of production of transforming growth factor-beta.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of transforming growth factor beta production","termid":"GO:0071634"},{"relation_name":"negatively_regulates","term_name":"transforming growth factor beta production","termid":"GO:0071604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of transforming growth factor beta production","secondary_identifiers":["GO:2001202"],"synonyms":[{"name":"negative regulation of TGF-B production","type":"exact"},{"name":"negative regulation of TGF-beta production","type":"exact"},{"name":"negative regulation of TGFB production","type":"exact"},{"name":"negative regulation of TGFbeta production","type":"exact"},{"name":"negative regulation of transforming growth factor-beta production","type":"exact"},{"name":"negative regulation of transforming growth factor-beta secretion","type":"narrow"}],"termid":"GO:0071635"}


id: GO:0018620
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + NADH + O2 + phthalate = cis-4,5-dihydroxycyclohexa-2,6-diene-1,2-dicarboxylate + NAD+.","definition_xrefs":["EC:1.14.12.7","RHEA:17489"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"phthalate 4,5-dioxygenase activity","secondary_identifiers":["UM-BBD_reactionID:r0102","KEGG_REACTION:R03630","MetaCyc:PHTHALATE-45-DIOXYGENASE-RXN"],"synonyms":[{"name":"PDO activity","type":"related"},{"name":"phthalate dioxygenase activity","type":"broad"},{"name":"phthalate,NADH:oxygen oxidoreductase (4,5-hydroxylating)","type":"related"}],"termid":"GO:0018620"}


id: PBO:0074557
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA host gene 10","termid":"PBO:0074557"}


id: PBO:0013064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ergothioneine biosynthesis protein Egt2","termid":"PBO:0013064"}


id: PBO:0005550
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperchlesterolemia","termid":"PBO:0005550"}


id: PBO:0005113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein Mcp2","termid":"PBO:0005113"}


id: PBO:0084533
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the NineTeen Complex (NTC); this complex contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs","termid":"PBO:0084533"}


id: PBO:0004099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin Pom152","termid":"PBO:0004099"}


id: GO:0160168
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=9 symmetry. The T=9 capsid is composed of 12 pentameric and 80 hexameric capsomeres.","definition_xrefs":["PMID:37138077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"icosahedral viral capsid","termid":"GO:0019030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"T=9 icosahedral viral capsid","secondary_identifiers":["VZ:5316"],"termid":"GO:0160168"}


id: PBO:0074205
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC39A13 antisense RNA 1","termid":"PBO:0074205"}


id: GO:2000741
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mesenchymal stem cell differentiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of stem cell differentiation","termid":"GO:2000738"},{"relation_name":"is_a","term_name":"regulation of mesenchymal stem cell differentiation","termid":"GO:2000739"},{"relation_name":"positively_regulates","term_name":"mesenchymal stem cell differentiation","termid":"GO:0072497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mesenchymal stem cell differentiation","termid":"GO:2000741"}


id: MONDO:0011766
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"46,XY complete gonadal dysgenesis","termid":"MONDO:0010765"},{"relation_name":"is_a","term_name":"46,XY disorder of sex development","termid":"MONDO:0020040"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"46,XY gonadal dysgenesis-motor and sensory neuropathy syndrome","secondary_identifiers":["OMIM:607080","UMLS:C5436061","DOID:0051055","MEDGEN:1727162","Orphanet:168563","MESH:C567773","GARD:17034"],"synonyms":[{"name":"46,XY gonadal dysgenesis, partial, with MINIFASCICULAR neuropathy","type":"related"},{"name":"46XY gonadal dysgenesis with minifascicular neuropathy","type":"exact"}],"termid":"MONDO:0011766","xrefs":{"Monarch":{"xref_id":"0011766"}}}


id: GO:0032787
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  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chemical reactions and pathways involving monocarboxylic acids, any organic acid containing one carboxyl (COOH) group or anion (COO-).","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid metabolic 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id: PBO:0034406
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_target_anatomical_entity_(obsolete_has_target_anatomical_entity)","termid":"PBO:0034406"}


id: MONDO:0800412
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"yakut short stature syndrome","termid":"MONDO:0800412","xrefs":{"Monarch":{"xref_id":"0800412"}}}


id: PBO:0044675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDHD1 divergent transcript","termid":"PBO:0044675"}


id: MONDO:0001138
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A angiodysplasia that involves the intestine.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"angiodysplasia","termid":"MONDO:0002322"},{"relation_name":"is_a","term_name":"intestinal disorder","termid":"MONDO:0005020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"angiodysplasia of intestine","secondary_identifiers":["ICD9:569.85","MEDGEN:540621","SCTID:235853006","UMLS:C0267367","DOID:10846","ICD9:569.84"],"synonyms":[{"name":"intestine angiodysplasia","type":"exact"}],"termid":"MONDO:0001138","xrefs":{"Monarch":{"xref_id":"0001138"}}}


id: GO:0006547
data:
  {"annotated_genes":["SJAG_04747","SJAG_00592","SJAG_01346","SJAG_02400","SJAG_01137","SJAG_03775","SJAG_00248","SJAG_03055"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78495,65549,82182,77576,58317,60638,73031,80303],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000105"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving L-histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aromatic amino acid metabolic process","termid":"GO:0009072"},{"relation_name":"is_a","term_name":"imidazole-containing compound metabolic process","termid":"GO:0052803"},{"relation_name":"is_a","term_name":"L-amino acid metabolic process","termid":"GO:0170033"},{"relation_name":"is_a","term_name":"proteinogenic amino acid metabolic process","termid":"GO:0170039"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00248":null,"SJAG_00592":null,"SJAG_01137":null,"SJAG_01346":null,"SJAG_02400":null,"SJAG_03055":null,"SJAG_03775":null,"SJAG_04747":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"L-histidine metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null},"secondary_identifiers":["Wikipedia:Histidine"],"synonyms":[{"name":"histidine metabolic process","type":"broad"},{"name":"histidine metabolism","type":"exact"}],"termid":"GO:0006547","terms_by_termid":{"GO:0000105":null}}


id: GO:0004168
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id: MOD:00013
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  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to an L-aspartic acid.","definition_xrefs":["PubMed:5764436","DeltaMass:0","RESID:AA0004","PubMed:9521123","PubMed:1097438","ChEBI:29958","PubMed:6692818","PubMed:9582379","PubMed:8089117","PubMed:339692","PubMed:4399050"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue","termid":"MOD:01441"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-aspartic acid residue","synonyms":[{"name":"(2S)-2-aminobutanedioic acid","type":"exact"},{"name":"2-azanylbutanedioic acid","type":"exact"},{"name":"Asp","type":"exact"},{"name":"L-aspartic acid","type":"exact"},{"name":"aminosuccinic acid","type":"exact"}],"termid":"MOD:00013"}


id: PBO:0091324
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human SSB","termid":"PBO:0091324"}


id: GO:0061134
data:
  {"annotated_genes":["SJAG_02625","SJAG_04505","SJAG_00460","SJAG_01072","SJAG_05252","SJAG_04484","SJAG_04211","SJAG_00591","SJAG_04633","SJAG_00837"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76139,80037],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061133"},{"annotations":[67895,105235,63984],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004866"},{"annotations":[80936,78817,72718,77181],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016504"},{"annotations":[101926],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030414"}]},"cv_name":"molecular_function","definition":"Binds to and modulates the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme regulator activity","termid":"GO:0030234"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00460":null,"SJAG_00591":null,"SJAG_00837":null,"SJAG_01072":null,"SJAG_02625":null,"SJAG_04211":null,"SJAG_04484":null,"SJAG_04505":null,"SJAG_04633":null,"SJAG_05252":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0098772","GO:0030234","GO:0003674"],"is_obsolete":false,"name":"peptidase regulator activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"termid":"GO:0061134","terms_by_termid":{"GO:0004866":null,"GO:0016504":null,"GO:0030414":null,"GO:0061133":null}}


id: GO:1901413
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of tetrapyrrole biosynthetic process from glycine and succinyl-CoA.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of amino acid metabolic process","termid":"GO:0006521"},{"relation_name":"is_a","term_name":"regulation of nucleobase-containing compound metabolic process","termid":"GO:0019219"},{"relation_name":"is_a","term_name":"regulation of phosphate metabolic process","termid":"GO:0019220"},{"relation_name":"is_a","term_name":"regulation of amide metabolic process","termid":"GO:0034248"},{"relation_name":"is_a","term_name":"regulation of sulfur metabolic process","termid":"GO:0042762"},{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"is_a","term_name":"regulation of tetrapyrrole biosynthetic process","termid":"GO:1901463"},{"relation_name":"regulates","term_name":"tetrapyrrole biosynthetic process from glycine and succinyl-CoA","termid":"GO:0033527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"regulates","termid":"GO:0033013"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0033013","GO:0006790","GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"regulation of tetrapyrrole biosynthetic process from glycine and succinyl-CoA","synonyms":[{"name":"regulation of tetrapyrrole anabolism from glycine and succinyl-CoA","type":"exact"},{"name":"regulation of tetrapyrrole biosynthesis from glycine and succinyl-CoA","type":"exact"},{"name":"regulation of tetrapyrrole formation from glycine and succinyl-CoA","type":"exact"},{"name":"regulation of tetrapyrrole synthesis from glycine and succinyl-CoA","type":"exact"}],"termid":"GO:1901413"}


id: PBO:0012826
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-removed_during","termid":"PBO:0012826"}


id: GO:0022031
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of an astrocyte cell through the telencephalon.","definition_xrefs":["GOC:dgh","GOC:dph","GOC:jid","GO_REF:0000021","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telencephalon glial cell migration","termid":"GO:0022030"},{"relation_name":"is_a","term_name":"astrocyte cell migration","termid":"GO:0043615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"telencephalon astrocyte cell migration","termid":"GO:0022031"}


id: PBO:0084424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Major mitochondrial D-lactate dehydrogenase; oxidizes D-lactate to pyruvate, transcription is heme-dependent, repressed by glucose, and derepressed in ethanol or lactate; located in the mitochondrial inner membrane","termid":"PBO:0084424"}


id: FYPO:0003718
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to tributyltin. Cells stop growing (and may die) at a concentration of tributyltin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0001985","FYPO:0000139","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to tributyltin","synonyms":[{"name":"hypersensitive to tributyltin","type":"exact"},{"name":"sensitive to tributylstannane","type":"exact"},{"name":"sensitive to tributyltin during mitotic cell cycle","type":"related"},{"name":"sensitive to tributyltin during vegetative growth","type":"exact"}],"termid":"FYPO:0003718"}


id: PBO:0087078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L39; required for ribosome biogenesis; loss of both Rpl31p and Rpl39p confers lethality; also exhibits genetic interactions with SIS1 and PAB1; homologous to mammalian ribosomal protein L39, no bacterial homolog","termid":"PBO:0087078"}


id: GO:0090335
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of brown fat cell differentiation. Brown fat cell differentiation is the process in which a relatively unspecialized cell acquires specialized features of a brown adipocyte, an animal connective tissue cell involved in adaptive thermogenesis. Brown adipocytes contain multiple small droplets of triglycerides and a high number of mitochondria.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of fat cell differentiation","termid":"GO:0045598"},{"relation_name":"regulates","term_name":"brown fat cell differentiation","termid":"GO:0050873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of brown fat cell differentiation","secondary_identifiers":["Reactome:R-HSA-9843743"],"termid":"GO:0090335"}


id: GO:0023059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The positive regulation of a signal transduction pathway in response to a stimulus upon prolonged exposure to that stimulus.","definition_xrefs":["GOC:mtg_signal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"adaptation of signaling pathway","termid":"GO:0023058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive adaptation of signaling pathway","synonyms":[{"name":"positive adaptation of signalling pathway","type":"exact"}],"termid":"GO:0023059"}


id: PR:000044504
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GTP-binding protein ypt5 (Schizosaccharomyces pombe) that is prenylated with Geranylgeranyl moieties on the Cys residues within the CxC motif. Example: UniProtKB:P36586-1, Cys-209/Cys-211, MOD:00113.","definition_xrefs":["PomBase:MAH","PMID:1597466","PMID:8226998"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GTP-binding protein ypt5 (Schizosaccharomyces pombe)","termid":"PR:000030005"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ypt5/Ip(C209,C211)","pombase_gene_id":"SPAC6F6.15","synonyms":[{"name":"PomBase_original_PRO_term_name: GTP-binding protein ypt5 prenylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"SpYPT5p prenylated","type":"related"},{"name":"ypt5/Ip(C209,C211)","type":"exact"}],"termid":"PR:000044504"}


id: GO:0140018
data:
  {"annotated_genes":["SJAG_04452","SJAG_04756","SJAG_00579","SJAG_03677"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97415,111473,112138,115967],"is_not":false,"summary":null,"term":"GO:0140018"}]},"cv_name":"biological_process","definition":"Any process that modulates the ability of the cytoplasmic translational apparatus to interpret the genetic code.","definition_xrefs":["PMID:22768388"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translational fidelity","termid":"GO:0006450"},{"relation_name":"is_a","term_name":"regulation of cytoplasmic translational elongation","termid":"GO:1900247"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00579":null,"SJAG_03677":null,"SJAG_04452":null,"SJAG_04756":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of cytoplasmic translational fidelity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140018","terms_by_termid":{"GO:0140018":null}}


id: PBO:0040711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL3 transcription coactivator","termid":"PBO:0040711"}


id: PBO:0046094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4A2 pseudogene 5","termid":"PBO:0046094"}


id: GO:0090451
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which boundaries between a cotyledon and the surrounding tissue are established and maintained.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formation of plant organ boundary","termid":"GO:0090691"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cotyledon boundary formation","termid":"GO:0090451"}


id: GO:0043537
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the migration of the endothelial cells of blood vessels.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of endothelial cell migration","termid":"GO:0010596"},{"relation_name":"is_a","term_name":"regulation of blood vessel endothelial cell migration","termid":"GO:0043535"},{"relation_name":"negatively_regulates","term_name":"blood vessel endothelial cell migration","termid":"GO:0043534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of blood vessel endothelial cell migration","synonyms":[{"name":"down regulation of blood vessel endothelial cell migration","type":"exact"},{"name":"down-regulation of blood vessel endothelial cell migration","type":"exact"},{"name":"downregulation of blood vessel endothelial cell migration","type":"exact"},{"name":"inhibition of blood vessel endothelial cell migration","type":"narrow"}],"termid":"GO:0043537"}


id: MONDO:0003515
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A teratoma that arises from the fallopian tube. It is a rare tumor, often found incidentally.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"teratoma","termid":"MONDO:0002601"},{"relation_name":"is_a","term_name":"fallopian tube germ cell tumor","termid":"MONDO:0003392"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fallopian tube teratoma","secondary_identifiers":["NCIT:C40131","DOID:5564","UMLS:C1517127","MEDGEN:309129"],"synonyms":[{"name":"fallopian tube teratoma","type":"exact"}],"termid":"MONDO:0003515","xrefs":{"Monarch":{"xref_id":"0003515"}}}


id: GO:0030067
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete respiratory chain cytochrome b6 (obsolete GO:0030067)","synonyms":[{"name":"respiratory chain cytochrome b6","type":"exact"}],"termid":"GO:0030067"}


id: GO:0033877
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-2-benzylsuccinate + succinyl-CoA = (R)-2-benzylsuccinyl-CoA + succinate.","definition_xrefs":["EC:2.8.3.15","RHEA:16469"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-transferase activity","termid":"GO:0008410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016782"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016782"],"is_obsolete":false,"name":"succinyl-CoA:(R)-benzylsuccinate CoA-transferase activity","secondary_identifiers":["GO:0018728","UM-BBD_reactionID:r0329","KEGG_REACTION:R05588","MetaCyc:RXN-864"],"synonyms":[{"name":"benzylsuccinate CoA-transferase activity","type":"related"},{"name":"succinyl-CoA:(R)-2-benzylsuccinate CoA-transferase activity","type":"related"},{"name":"succinyl-CoA:benzylsuccinate CoA-transferase activity","type":"exact"}],"termid":"GO:0033877"}


id: PBO:0001618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase regulatory subunit Sds22","termid":"PBO:0001618"}


id: GO:0102974
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: versicolorone + NADP = hydroxyversicolorone + NADPH.","definition_xrefs":["RHEA:35691"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"hydroxyversicolorone reductase activity","secondary_identifiers":["MetaCyc:RXN-9489"],"termid":"GO:0102974"}


id: MONDO:0004127
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lung adenocarcinoma detectable by sputum cytology only. The primary tumor is undetectable radiographically or during bronchoscopy; therefore, it can not be assessed.","definition_xrefs":["NCIT:C6699"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lung adenocarcinoma","termid":"MONDO:0005061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"lung occult adenocarcinoma","secondary_identifiers":["UMLS:C1335096","DOID:7168","MEDGEN:277443"],"synonyms":[{"name":"occult adenocarcinoma of lung","type":"related"},{"name":"occult adenocarcinoma of the lung","type":"exact"},{"name":"occult lung adenocarcinoma","type":"related"}],"termid":"MONDO:0004127","xrefs":{"Monarch":{"xref_id":"0004127"}}}


id: GO:0033365
data:
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id: GO:0032971
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id: FYPO:0003321
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id: FYPO:0003860
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id: GO:0042632
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id: GO:0036174
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id: PBO:0113459
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id: PBO:0088155
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id: PBO:0059544
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id: MONDO:1012041
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id: PBO:0034536
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id: GO:0006891
data:
  {"annotated_genes":["SJAG_04021","SJAG_02655","SJAG_01508","SJAG_00578","SJAG_03054","SJAG_04023","SJAG_05030","SJAG_02316","SJAG_04739","SJAG_02234","SJAG_03663","SJAG_01600","SJAG_03158","SJAG_04002","SJAG_00330","SJAG_04569","SJAG_00041","SJAG_02750","SJAG_01415","SJAG_00804","SJAG_01071","SJAG_04070","SJAG_04474","SJAG_04837","SJAG_04358","SJAG_02211","SJAG_03842","SJAG_00332","SJAG_03467","SJAG_02525","SJAG_01459","SJAG_00192"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57854,71511,72079,72197,72761,73404,75531,77207,78004,79251,79907,80215,80793,81772,90610,98255,99254,99693,100404,101715,102296,104484,105326,106863,109098,111545,111811],"is_not":false,"summary":null,"term":"GO:0006891"},{"annotations":[100043],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048219"},{"annotations":[118834,90908,93098,111483],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000301"}]},"cv_name":"biological_process","definition":"The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network).","definition_xrefs":["ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi vesicle transport","termid":"GO:0048193"}],"gene_count":32,"genes_by_uniquename":{"SJAG_00041":null,"SJAG_00192":null,"SJAG_00330":null,"SJAG_00332":null,"SJAG_00578":null,"SJAG_00804":null,"SJAG_01071":null,"SJAG_01415":null,"SJAG_01459":null,"SJAG_01508":null,"SJAG_01600":null,"SJAG_02211":null,"SJAG_02234":null,"SJAG_02316":null,"SJAG_02525":null,"SJAG_02655":null,"SJAG_02750":null,"SJAG_03054":null,"SJAG_03158":null,"SJAG_03467":null,"SJAG_03663":null,"SJAG_03842":null,"SJAG_04002":null,"SJAG_04021":null,"SJAG_04023":null,"SJAG_04070":null,"SJAG_04358":null,"SJAG_04474":null,"SJAG_04569":null,"SJAG_04739":null,"SJAG_04837":null,"SJAG_05030":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"intra-Golgi vesicle-mediated transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"intra-Golgi transport","type":"exact"}],"termid":"GO:0006891","terms_by_termid":{"GO:0000301":null,"GO:0006891":null,"GO:0048219":null}}


id: PR:Q9UUM2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- swi1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UUM2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating-type switching protein swi1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC216.06c","synonyms":[{"name":"Spom972h-swi1","type":"exact"},{"name":"replication fork protection complex subunit swi1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UUM2"}


id: MONDO:1010327
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Strabismus that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"strabismus, non-human animal","secondary_identifiers":["OMIA:000949"],"termid":"MONDO:1010327","xrefs":{"Monarch":{"xref_id":"1010327"}}}


id: MONDO:0004578
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"retinoschisis","termid":"MONDO:0004579"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"flat retinoschisis","secondary_identifiers":["SCTID:83405000","UMLS:C0154817","DOID:8464","ICD9:361.11","MEDGEN:509672"],"termid":"MONDO:0004578","xrefs":{"Monarch":{"xref_id":"0004578"}}}


id: PBO:0039103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosylhomocysteinase pseudogene 7","termid":"PBO:0039103"}


id: PBO:0080983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 18","termid":"PBO:0080983"}


id: PBO:0033813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human SMARCD1, SMARCD2 and SMARCD3 ortholog","termid":"PBO:0033813"}


id: MONDO:0006758
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mycobacterium infections of the female reproductive tract (genitalia, female).","definition_xrefs":["MESH:D014384"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive system disorder","termid":"MONDO:0005039"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"female genital tuberculosis","secondary_identifiers":["MedDRA:10061150","EFO:1000935","MEDGEN:21724","SCTID:74181004","UMLS:C0041311"],"termid":"MONDO:0006758","xrefs":{"Monarch":{"xref_id":"0006758"}}}


id: PBO:0041420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 8 putative open reading frame 17","termid":"PBO:0041420"}


id: GO:0015828
data:
  {"annotated_genes":["SJAG_03400","SJAG_03256"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[64525],"is_not":false,"summary":null,"term":"GO:0015828"},{"annotations":[105789],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090514"}]},"cv_name":"biological_process","definition":"The directed movement of tyrosine, 2-amino-3-(4-hydroxyphenyl)propanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transport","termid":"GO:0015695"},{"relation_name":"is_a","term_name":"aromatic amino acid transport","termid":"GO:0015801"},{"relation_name":"is_a","term_name":"L-amino acid transport","termid":"GO:0015807"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03256":null,"SJAG_03400":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"tyrosine transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"L-tyrosine transport","type":"narrow"}],"termid":"GO:0015828","terms_by_termid":{"GO:0015828":null,"GO:0090514":null}}


id: PATO:0002088
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structure quality inhering in a bearer by virtue of the bearer's body consisting of one sac.","definition_xrefs":["mondofacto:mondofacto"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cystic","termid":"PATO:0001673"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monocystic","termid":"PATO:0002088"}


id: PBO:0084376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Long chain fatty acyl-CoA synthetase; activates fatty acids with a preference for C12:0-C16:0 chain lengths; role in the competitive import of long-chain fatty acids and sphingoid long-chain bases; role in stationary phase survival; localizes to lipid particles and the plasma membrane; role in sphingolipid-to-glycerolipid metabolism; forms cytoplasmic foci upon replication stress; faa1 faa4 double null complemented by any of human ACSBG1, ACSL1, 3, 4, 5, 6, SLC27A2, or 4","termid":"PBO:0084376"}


id: MONDO:0859346
data:
  {"annotated_genes":["SJAG_04884"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87527],"is_not":false,"summary":null,"term":"MONDO:0859346"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mosaic variegated aneuploidy syndrome","termid":"MONDO:0000141"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04884":null},"genotype_count":0,"is_obsolete":false,"name":"mosaic variegated aneuploidy syndrome 7 with inflammation and tumor predisposition","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:620189","MEDGEN:1824057","UMLS:C5774284","DOID:0060982"],"termid":"MONDO:0859346","terms_by_termid":{"MONDO:0859346":null},"xrefs":{"Monarch":{"xref_id":"0859346"}}}


id: MONDO:0000762
data:
  {"annotated_genes":["SJAG_02231","SJAG_01286"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88711],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011402"},{"annotations":[87469],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012574"}]},"cv_name":"mondo","definition":"A chromosomal disorder consisting of the presence of a part of a chromosome in more copies than in a regular genome.","direct_ancestors":[{"relation_name":"is_a","term_name":"chromosomal disorder","termid":"MONDO:0019040"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01286":null,"SJAG_02231":null},"genotype_count":0,"is_obsolete":false,"name":"syndrome caused by partial chromosomal duplication","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0060429"],"synonyms":[{"name":"chromosomal duplication syndrome","type":"related"},{"name":"microduplication sydrome","type":"exact"}],"termid":"MONDO:0000762","terms_by_termid":{"MONDO:0011402":null,"MONDO:0012574":null},"xrefs":{"Monarch":{"xref_id":"0000762"}}}


id: PBO:0071094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 96","termid":"PBO:0071094"}


id: MONDO:0023154
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibromatosis multiple non ossifying","secondary_identifiers":["SCTID:715432009","MEDGEN:450548","UMLS:C0796000"],"synonyms":[{"name":"Jaffe Campanacci syndrome","type":"related"},{"name":"disseminated nonossifying fibromas in association with cafe-au-lait spots","type":"related"}],"termid":"MONDO:0023154","xrefs":{"Monarch":{"xref_id":"0023154"}}}


id: GO:1904475
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of small GTPase binding.","definition_xrefs":["GO_REF:0000059","PMID:15798216","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of small GTPase binding (obsolete GO:1904475)","synonyms":[{"name":"regulation of Ras GTPase binding","type":"narrow"}],"termid":"GO:1904475"}


id: PBO:0042979
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain helicase DNA binding protein 5","termid":"PBO:0042979"}


id: PBO:0088904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial m-AAA protease Yta12","termid":"PBO:0088904"}


id: GO:0060787
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate or extent of the formation of the posterior neural plate, the posterior end of the flat, thickened layer of ectodermal cells known as the neural plate.","definition_xrefs":["GOC:sdb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor signaling pathway","termid":"GO:0008543"},{"relation_name":"is_a","term_name":"regulation of embryonic development","termid":"GO:0045995"},{"relation_name":"is_a","term_name":"positive regulation of morphogenesis of an epithelium","termid":"GO:1905332"},{"relation_name":"is_a","term_name":"regulation of animal organ morphogenesis","termid":"GO:2000027"},{"relation_name":"positively_regulates","term_name":"posterior neural plate formation","termid":"GO:0090018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of posterior neural plate formation by fibroblast growth factor receptor signaling pathway","synonyms":[{"name":"positive regulation of posterior neural plate formation by FGF receptor signaling pathway","type":"related"},{"name":"positive regulation of posterior neural plate formation by fibroblast growth factor receptor signalling pathway","type":"exact"}],"termid":"GO:0060787"}


id: MONDO:0020372
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"early-onset zonular cataract","termid":"MONDO:0020379"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"early-onset sutural cataract","secondary_identifiers":["GARD:16885","Orphanet:98985"],"synonyms":[{"name":"early-onset cataract with Y-shaped suture opacities","type":"exact"}],"termid":"MONDO:0020372","xrefs":{"Monarch":{"xref_id":"0020372"}}}


id: GO:0102086
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: vanillate + L-glutamate(1-) + ATP = H+ + N-vanillate-L-glutamate + AMP + diphosphoric acid.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete N-vanillate-L-glutamate synthetase activity (obsolete GO:0102086)","termid":"GO:0102086"}


id: PBO:0088804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall and ascospore endo-1,3-beta-glucanase Eng2","termid":"PBO:0088804"}


id: GO:0061464
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The part of the plasma membrane that contributes to the structure of a cell-substrate junction.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete plasma membrane part of cell-substrate junction (obsolete GO:0061464)","termid":"GO:0061464"}


id: GO:0032985
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of a protein-carbohydrate complex into its constituent components.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex disassembly","termid":"GO:0032984"},{"relation_name":"is_a","term_name":"protein-carbohydrate complex subunit organization","termid":"GO:0071823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein-carbohydrate complex disassembly","termid":"GO:0032985"}


id: SO:0002079
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that intersects the splice region of an incompletely annotated transcript.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"incomplete_transcript_variant","termid":"SO:0002075"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"incomplete_transcript_splice_region_variant","synonyms":[{"name":"incomplete transcript splice region variant","type":"exact"}],"termid":"SO:0002079"}


id: GO:0007259
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cell surface receptor signaling pathway in which ligand binding causes the receptor to dimerize, bringing the receptor-associated JAKs into close proximity. The JAKs then phosphorylate and activate each other on tyrosine residues.This leads to the activation of associated STAT protein, causing the STATs to dissociate from the receptor, translocate to the nucleus. The pathway ends with regulation of target gene expression by STAT proteins.","definition_xrefs":["PMID:12039028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway via STAT","termid":"GO:0097696"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"cell surface receptor signaling pathway via JAK-STAT","secondary_identifiers":["Wikipedia:JAK-STAT_signaling_pathway"],"synonyms":[{"name":"JAK-STAT cascade","type":"narrow"},{"name":"JAK-STAT signal transduction","type":"exact"},{"name":"receptor signaling pathway via JAK-STAT","type":"exact"}],"termid":"GO:0007259"}


id: PBO:0005406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiosulfate sulfurtransferase, involved in tRNA wobble position thiolation Tum1 (predicted)","termid":"PBO:0005406"}


id: GO:0002949
data:
  {"annotated_genes":["SJAG_00865","SJAG_04201","SJAG_02863","SJAG_04182","SJAG_00378","SJAG_04700","SJAG_06560"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[59318,80618,100229,101408,103095],"is_not":false,"summary":null,"term":"GO:0002949"},{"annotations":[120638,77363],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072670"}]},"cv_name":"biological_process","definition":"The attachment of a carbonyl group and a threonine to the amino group of the adenine residue immediately 3' of the anticodon, in tRNAs that decode ANN codons (where N is any base).","definition_xrefs":["GOC:mah","PMID:19287007","PMID:23258706","PMID:21183954","GOC:imk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA modification","termid":"GO:0006400"},{"relation_name":"is_a","term_name":"tRNA threonylcarbamoyladenosine metabolic process","termid":"GO:0070525"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00378":null,"SJAG_00865":null,"SJAG_02863":null,"SJAG_04182":null,"SJAG_04201":null,"SJAG_04700":null,"SJAG_06560":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006399"],"is_obsolete":false,"name":"tRNA threonylcarbamoyladenosine modification","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0070526"],"synonyms":[{"name":"t6A biosynthesis","type":"exact"},{"name":"t6A biosynthetic process","type":"exact"},{"name":"t6A tRNA modification","type":"exact"},{"name":"threonylcarbamoyladenosine anabolism","type":"exact"},{"name":"threonylcarbamoyladenosine biosynthesis","type":"exact"},{"name":"threonylcarbamoyladenosine biosynthetic process","type":"exact"},{"name":"threonylcarbamoyladenosine formation","type":"exact"},{"name":"threonylcarbamoyladenosine synthesis","type":"exact"}],"termid":"GO:0002949","terms_by_termid":{"GO:0002949":null,"GO:0072670":null}}


id: GO:0051015
data:
  {"annotated_genes":["SJAG_01943","SJAG_03380","SJAG_04001","SJAG_00970","SJAG_01993","SJAG_02700","SJAG_03011","SJAG_00938","SJAG_04498","SJAG_02431","SJAG_00152","SJAG_00279","SJAG_00677","SJAG_03703","SJAG_02245","SJAG_03025","SJAG_03088","SJAG_03086","SJAG_02566","SJAG_02396","SJAG_01894","SJAG_01268","SJAG_01964","SJAG_04703","SJAG_01384","SJAG_04621","SJAG_02075"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72001,72068,72274,73003,73353,75263,76252,76783,76837,77433,77459,77918,78208,78370,78544,78622,79305,79637,79684,80865,80992,81021,81461,81634,81909,82070],"is_not":false,"summary":null,"term":"GO:0051015"},{"annotations":[79141],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003786"}]},"cv_name":"molecular_function","definition":"Binding to an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin binding","termid":"GO:0003779"},{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":27,"genes_by_uniquename":{"SJAG_00152":null,"SJAG_00279":null,"SJAG_00677":null,"SJAG_00938":null,"SJAG_00970":null,"SJAG_01268":null,"SJAG_01384":null,"SJAG_01894":null,"SJAG_01943":null,"SJAG_01964":null,"SJAG_01993":null,"SJAG_02075":null,"SJAG_02245":null,"SJAG_02396":null,"SJAG_02431":null,"SJAG_02566":null,"SJAG_02700":null,"SJAG_03011":null,"SJAG_03025":null,"SJAG_03086":null,"SJAG_03088":null,"SJAG_03380":null,"SJAG_03703":null,"SJAG_04001":null,"SJAG_04498":null,"SJAG_04621":null,"SJAG_04703":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003779"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0003779","GO:0005488","GO:0008092","GO:0003674"],"is_obsolete":false,"name":"actin filament binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"F-actin binding","type":"exact"},{"name":"actin cross-linking activity","type":"related"}],"termid":"GO:0051015","terms_by_termid":{"GO:0003786":null,"GO:0051015":null}}


id: MONDO:0017003
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndrome caused by partial chromosomal deletion","termid":"MONDO:0000761"},{"relation_name":"is_a","term_name":"chromosome X disorder","termid":"MONDO:0700027"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial deletion of chromosome X","secondary_identifiers":["MEDGEN:1826030","GARD:20911","UMLS:C5679690","Orphanet:263726"],"synonyms":[{"name":"partial deletion of chromosome type X","type":"exact"},{"name":"partial monosomy of chromosome X","type":"exact"}],"termid":"MONDO:0017003","xrefs":{"Monarch":{"xref_id":"0017003"}}}


id: MONDO:0000957
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"lacrimal apparatus disorder","termid":"MONDO:0001854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"lacrimal passage granuloma","secondary_identifiers":["DOID:10174","ICD9:375.81","UMLS:C0155253","MEDGEN:509875","ICD10CM:H04.81","SCTID:417563003"],"synonyms":[{"name":"granuloma of lacrimal passages","type":"exact"}],"termid":"MONDO:0000957","xrefs":{"Monarch":{"xref_id":"0000957"}}}


id: PBO:0072161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 38","termid":"PBO:0072161"}


id: GO:0018829
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1,1-dichloro-2,2-bis(4-chlorophenyl)ethane = HCl + 1-chloro-2,2-bis(4-chlorophenyl)ethene. 1,1-dichloro-2,2-bis(4-chlorophenyl)ethane is also known as DDD; 1-chloro-2,2-bis(4-chlorophenyl)ethene is also known as DDMU.","definition_xrefs":["UM-BBD_reactionID:r0513"],"gene_count":0,"genotype_count":0,"name":"obsolete 1,1-dichloro-2,2-bis(4-chlorophenyl)ethane dehydrochlorinase activity (obsolete GO:0018829)","synonyms":[{"name":"DDD dehydrochlorinase activity","type":"exact"}],"termid":"GO:0018829"}


id: GO:0060002
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A motor activity that generates movement along a microfilament towards the plus end, driven by ATP hydrolysis. The minus end of an actin filament is the end that does not preferentially add actin monomers.","definition_xrefs":["GOC:dph","PMID:10519557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microfilament motor activity","termid":"GO:0000146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003774"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824","GO:0003774"],"is_obsolete":false,"name":"plus-end directed microfilament motor activity","synonyms":[{"name":"barbed-end directed actin-filament motor activity","type":"exact"},{"name":"plus-end directed actin filament motor activity","type":"related"},{"name":"plus-end directed actin-filament motor activity","type":"exact"}],"termid":"GO:0060002"}


id: PBO:0079724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"upstream binding transcription factor","termid":"PBO:0079724"}


id: GO:0050006
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sucrose = 6-O-alpha-D-glucopyranosyl-D-fructofuranose.","definition_xrefs":["MetaCyc:ISOMALTULOSE-SYNTHASE-RXN","EC:5.4.99.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular transferase activity","termid":"GO:0016866"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"isomaltulose synthase activity","secondary_identifiers":["RHEA:24032"],"synonyms":[{"name":"isomaltulose synthetase activity","type":"related"},{"name":"sucrose alpha-glucosyltransferase activity","type":"related"},{"name":"sucrose glucosylmutase activity","type":"related"},{"name":"trehalulose synthase activity","type":"related"}],"termid":"GO:0050006"}


id: PBO:0011515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactose specific flocculin Gsf2","termid":"PBO:0011515"}


id: PBO:0111821
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMC family","termid":"PBO:0111821"}


id: SO:0000435
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A polypurine tract within an LTR_retrotransposon.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"conserved_region","termid":"SO:0000330"},{"relation_name":"part_of","term_name":"LTR_retrotransposon","termid":"SO:0000186"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RR_tract","synonyms":[{"name":"LTR retrotransposon poly purine tract","type":"related"},{"name":"RR tract","type":"exact"}],"termid":"SO:0000435"}


id: PBO:0042574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDKN2A interacting protein N-terminal like pseudogene 3","termid":"PBO:0042574"}


id: GO:0086083
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein or protein complex that results in the connection of a bundle of His cell with a Purkinje myocyte and contributes to the communication between the two cells.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding involved in heterotypic cell-cell adhesion","termid":"GO:0086080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098631"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0098631","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"cell adhesive protein binding involved in bundle of His cell-Purkinje myocyte communication","termid":"GO:0086083"}


id: PBO:0058788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7157","termid":"PBO:0058788"}


id: GO:0099037
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the presynaptic endosome membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete anchored component of presynaptic endosome membrane (obsolete GO:0099037)","termid":"GO:0099037"}


id: MONDO:0010324
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic X-linked intellectual disability","termid":"MONDO:0019181"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intellectual disability, X-linked 81","secondary_identifiers":["GARD:22676","MEDGEN:335203","DOID:0112033","MESH:C564515","OMIM:300433","UMLS:C1845531"],"synonyms":[{"name":"MRX81","type":"exact"},{"name":"intellectual disability, X-linked 81","type":"exact"},{"name":"mental retardation, X-linked 81","type":"related"},{"name":"mental retardation, X-linked 81, X-linked recessive","type":"exact"}],"termid":"MONDO:0010324","xrefs":{"Monarch":{"xref_id":"0010324"}}}


id: GO:0120289
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of intramembrane cleaving aspartic-type endopeptidase activity.","definition_xrefs":["GOC:krc","PMID:32616437"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of aspartic endopeptidase activity, intramembrane cleaving (obsolete GO:0120289)","termid":"GO:0120289"}


id: PBO:0087621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the COP9 signalosome (CSN) complex; this complex cleaves the ubiquitin-like protein Nedd8 from SCF ubiquitin ligases; plays a role in the mating pheromone response","termid":"PBO:0087621"}


id: PBO:0065933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rac family small GTPase 1 pseudogene 7","termid":"PBO:0065933"}


id: GO:0005194
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Mediates the adhesion of the cell to other cells or to the extracellular matrix.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete cell adhesion molecule activity (obsolete GO:0005194)","synonyms":[{"name":"cell adhesion molecule activity","type":"exact"}],"termid":"GO:0005194"}


id: PBO:0067518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 659, pseudogene","termid":"PBO:0067518"}


id: MONDO:0009802
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteodysplasty, precocious, of Danks, Mayne, and Kozlowski","secondary_identifiers":["MEDGEN:337989","OMIM:259270","UMLS:C1850185","MESH:C564922"],"synonyms":[{"name":"Danks Mayne Kozlowski precocious osteodysplasty","type":"related"},{"name":"osteodysplasty precocious of Danks Mayne and Kozlowski","type":"related"},{"name":"osteodysplasty, precocious, of Danks, Mayne, and Kozlowski","type":"exact"}],"termid":"MONDO:0009802","xrefs":{"Monarch":{"xref_id":"0009802"}}}


id: PBO:0017966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF2 gamma subunit","termid":"PBO:0017966"}


id: PBO:0002723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nascent polypeptide-associated complex beta subunit","termid":"PBO:0002723"}


id: MONDO:0003091
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A mucoepidermoid carcinoma that involves the zone of skin.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin carcinoma","termid":"MONDO:0002656"},{"relation_name":"is_a","term_name":"mucoepidermoid carcinoma","termid":"MONDO:0003036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0004992"],"is_obsolete":false,"name":"cutaneous mucoepidermoid carcinoma","secondary_identifiers":["SCTID:254713002","UMLS:C0346019","NCIT:C4472","MEDGEN:91072","DOID:4683"],"synonyms":[{"name":"mucoepidermoid skin carcinoma","type":"exact"},{"name":"zone of skin mucoepidermoid carcinoma","type":"exact"}],"termid":"MONDO:0003091","xrefs":{"Monarch":{"xref_id":"0003091"}}}


id: PBO:0069100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 347, pseudogene","termid":"PBO:0069100"}


id: PBO:0057426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548z","termid":"PBO:0057426"}


id: GO:0007524
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the adult visceral muscle over time, from its formation to the mature structure.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"visceral muscle development","termid":"GO:0007522"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adult visceral muscle development","termid":"GO:0007524"}


id: GO:0100040
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates invasive growth in response to glucose limitation.","definition_xrefs":["GOC:cjm","GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of invasive growth in response to glucose limitation by transcription from RNA polymerase II promoter (obsolete GO:0100040)","termid":"GO:0100040"}


id: MONDO:0014759
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive non-syndromic intellectual disability in which the cause of the disease is a mutation in the HNMT gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive non-syndromic intellectual disability","termid":"MONDO:0019502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0037792","MONDO:0006025"],"is_obsolete":false,"name":"intellectual disability, autosomal recessive 51","secondary_identifiers":["DOID:0081214","MEDGEN:903243","GARD:22571","OMIM:616739","UMLS:C4225220"],"synonyms":[{"name":"HNMT autosomal recessive non-syndromic intellectual disability","type":"exact"},{"name":"MRT51","type":"exact"},{"name":"autosomal recessive non-syndromic intellectual disability caused by mutation in HNMT","type":"exact"},{"name":"intellectual developmental disorder, autosomal recessive 51","type":"exact"},{"name":"intellectual disability, autosomal recessive 51","type":"exact"},{"name":"intellectual disability, autosomal recessive type 51","type":"exact"},{"name":"mental retardation, autosomal recessive 51","type":"exact"},{"name":"mental retardation, autosomal recessive type 51","type":"exact"}],"termid":"MONDO:0014759","xrefs":{"Monarch":{"xref_id":"0014759"}}}


id: GO:1904961
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the quiescent center. This process pertains to the physical shaping of a rudimentary structure.","definition_xrefs":["PMID:21233333","GOC:TermGenie","GO_REF:0000084"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure arrangement","termid":"GO:0048532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"quiescent center organization","synonyms":[{"name":"quiescent center structural organization","type":"exact"}],"termid":"GO:1904961"}


id: PBO:0074816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 16","termid":"PBO:0074816"}


id: MONDO:0013104
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"excluded_subClassOf","term_name":"skin basal cell carcinoma","termid":"MONDO:0005341"},{"relation_name":"is_a","term_name":"basal cell carcinoma, susceptibility to","termid":"MONDO:0100047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basal cell carcinoma, susceptibility to, 4","secondary_identifiers":["UMLS:C2751602","MEDGEN:414061","OMIM:613061"],"synonyms":[{"name":"BCC4","type":"exact"},{"name":"basal cell carcinoma, susceptibility to, 4","type":"exact"}],"termid":"MONDO:0013104","xrefs":{"Monarch":{"xref_id":"0013104"}}}


id: GO:0072279
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenetic process in which the renal epithelium narrows along one axis and lengthens in a perpendicular axis that contributes to the shaping of a nephron in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"convergent extension involved in nephron morphogenesis","termid":"GO:0072045"},{"relation_name":"part_of","term_name":"metanephric nephron morphogenesis","termid":"GO:0072273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"convergent extension involved in metanephric nephron morphogenesis","termid":"GO:0072279"}


id: PBO:0060784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B10 pseudogene 2","termid":"PBO:0060784"}


id: PBO:0077221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane BAX inhibitor motif containing 4","termid":"PBO:0077221"}


id: PBO:0085666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in nucleolar integrity and processing of pre-rRNA; has a role in processing rRNA for the 60S ribosome subunit; transcript is induced in response to cytotoxic stress but not genotoxic stress; relocalizes from nucleus to nucleolus upon DNA replication stress","termid":"PBO:0085666"}


id: MONDO:1012395
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"rupture of the cranial cruciate ligament, non-human animal","termid":"MONDO:1011960"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rupture of the cranial cruciate ligament, dog","secondary_identifiers":["OMIA:001474-9615"],"termid":"MONDO:1012395","xrefs":{"Monarch":{"xref_id":"1012395"}}}


id: GO:0002726
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of T cell cytokine production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of T cell mediated immunity","termid":"GO:0002711"},{"relation_name":"is_a","term_name":"positive regulation of cytokine production involved in immune response","termid":"GO:0002720"},{"relation_name":"is_a","term_name":"regulation of T cell cytokine production","termid":"GO:0002724"},{"relation_name":"positively_regulates","term_name":"T cell cytokine production","termid":"GO:0002369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of T cell cytokine production","synonyms":[{"name":"activation of T cell cytokine production","type":"narrow"},{"name":"positive regulation of T lymphocyte cytokine production","type":"exact"},{"name":"positive regulation of T-cell cytokine production","type":"exact"},{"name":"positive regulation of T-lymphocyte cytokine production","type":"exact"},{"name":"stimulation of T cell cytokine production","type":"narrow"},{"name":"up regulation of T cell cytokine production","type":"exact"},{"name":"up-regulation of T cell cytokine production","type":"exact"},{"name":"upregulation of T cell cytokine production","type":"exact"}],"termid":"GO:0002726"}


id: PBO:0046674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESX homeobox 1","termid":"PBO:0046674"}


id: MONDO:0003115
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hemangioma arising from the subglottic area.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemangioma","termid":"MONDO:0006500"},{"relation_name":"is_a","term_name":"benign neoplasm of subglottis","termid":"MONDO:0021530"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"subglottic hemangioma","secondary_identifiers":["UMLS:C1336518","DOID:472","MEDGEN:234907","NCIT:C6026"],"synonyms":[{"name":"angioma of subglottis","type":"exact"},{"name":"angioma of the subglottis","type":"exact"},{"name":"hemangioma of subglottis","type":"exact"},{"name":"hemangioma of the subglottis","type":"exact"},{"name":"subglottic angioma","type":"exact"},{"name":"subglottic hemangioma","type":"exact"},{"name":"subglottis angioma","type":"exact"},{"name":"subglottis hemangioma","type":"exact"}],"termid":"MONDO:0003115","xrefs":{"Monarch":{"xref_id":"0003115"}}}


id: MONDO:0000098
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete thyrotoxic periodic paralysis (obsolete MONDO:0000098)","termid":"MONDO:0000098","xrefs":{"Monarch":{"xref_id":"0000098"}}}


id: PBO:0043850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C3b/C4b receptor 1 like","termid":"PBO:0043850"}


id: PBO:0066441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reticulophagy regulator family member 2","termid":"PBO:0066441"}


id: MONDO:0030964
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"intellectual disability, autosomal dominant","termid":"MONDO:0100172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"intellectual developmental disorder, autosomal dominant 67","secondary_identifiers":["DOID:0061040","UMLS:C5677006","MEDGEN:1805690","OMIM:619927"],"synonyms":[{"name":"MRD67","type":"exact"},{"name":"intellectual developmental disorder, autosomal dominant 67","type":"exact"},{"name":"mental retardation, autosomal dominant 67","type":"exact"}],"termid":"MONDO:0030964","xrefs":{"Monarch":{"xref_id":"0030964"}}}


id: GO:0016230
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of the enzyme sphingomyelin phosphodiesterase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipase activator activity","termid":"GO:0016004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0030234"}],"interesting_parent_ids":["GO:0003674","GO:0098772","GO:0030234","GO:0140677"],"is_obsolete":false,"name":"sphingomyelin phosphodiesterase activator activity","synonyms":[{"name":"neutral sphingomyelinase activator","type":"exact"}],"termid":"GO:0016230"}


id: MONDO:0014192
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary ciliary dyskinesia in which the cause of the disease is a mutation in the ZMYND10 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary ciliary dyskinesia","termid":"MONDO:0016575"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary ciliary dyskinesia 22","secondary_identifiers":["OMIM:615444","MEDGEN:815873","DOID:0110597","UMLS:C3809543","GARD:15968"],"synonyms":[{"name":"CILD22","type":"exact"},{"name":"ZMYND10 primary ciliary dyskinesia","type":"exact"},{"name":"ciliary dyskinesia, primary, 22","type":"related"},{"name":"ciliary dyskinesia, primary, 22, with or without situs inversus","type":"related"},{"name":"ciliary dyskinesia, primary, type 22","type":"exact"},{"name":"primary ciliary dyskinesia 22 with or without situs inversus","type":"exact"},{"name":"primary ciliary dyskinesia caused by mutation in ZMYND10","type":"exact"},{"name":"primary ciliary dyskinesia type 22","type":"exact"}],"termid":"MONDO:0014192","xrefs":{"Monarch":{"xref_id":"0014192"}}}


id: GO:0010339
data:
  {"annotated_genes":["SJAG_01755","SJAG_04723","SJAG_00239","SJAG_01975","SJAG_04864","SJAG_04720"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[90634],"is_not":false,"summary":null,"term":"GO:0010339"},{"annotations":[118564,104673,104928,104927,108827],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070263"}]},"cv_name":"cellular_component","definition":"The side of the cell wall that is opposite to the side that faces the cell and its contents.","definition_xrefs":["GOC:tb","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cell wall","termid":"GO:0005618"},{"relation_name":"part_of","term_name":"cell surface","termid":"GO:0009986"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00239":null,"SJAG_01755":null,"SJAG_01975":null,"SJAG_04720":null,"SJAG_04723":null,"SJAG_04864":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0009986"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005618"}],"interesting_parent_ids":["GO:0005618","GO:0009986","GO:0005575"],"is_obsolete":false,"name":"external side of cell wall","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010339","terms_by_termid":{"GO:0010339":null,"GO:0070263":null}}


id: PBO:0051974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IZUMO1 receptor, JUNO","termid":"PBO:0051974"}


id: PBO:0031172
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mitotic_catastrophe_with_cut,_elongated_cell","termid":"PBO:0031172"}


id: GO:0009253
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of peptidoglycans, any of a class of glycoconjugates found in bacterial cell walls and consisting of long glycan strands of alternating residues of beta-(1,4) linked N-acetylglucosamine and N-acetylmuramic acid, cross-linked by short peptides.","definition_xrefs":["PMID:9158729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidoglycan metabolic process","termid":"GO:0000270"},{"relation_name":"is_a","term_name":"glycosaminoglycan catabolic process","termid":"GO:0006027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidoglycan catabolic process","secondary_identifiers":["GO:0009286"],"synonyms":[{"name":"murein catabolic process","type":"exact"},{"name":"murein catabolism","type":"exact"},{"name":"peptidoglycan breakdown","type":"exact"},{"name":"peptidoglycan catabolism","type":"exact"},{"name":"peptidoglycan degradation","type":"exact"}],"termid":"GO:0009253"}


id: GO:0102629
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: patuletin + S-adenosyl-L-methionine = quercetagetin 3',6-dimethyl ether + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete patuletin 3'-O-methyltransferase activity (obsolete GO:0102629)","termid":"GO:0102629"}


id: PBO:0111751
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein","termid":"PBO:0111751"}


id: GO:0040003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Synthesis and deposition of a chitin-based noncellular, hardened, or membranous secretion from an epithelial sheet. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cuticle development","termid":"GO:0042335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chitin-based cuticle development","synonyms":[{"name":"chitin-based cuticle anabolism","type":"exact"},{"name":"chitin-based cuticle biosynthetic process","type":"exact"},{"name":"chitin-based cuticle formation","type":"exact"},{"name":"chitin-based cuticle synthesis","type":"exact"}],"termid":"GO:0040003"}


id: MONDO:0007916
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Primary intestinal lymphangiectasia (PIL) is a rare intestinal disease characterized by dilated intestinal lacteals which cause lymph leakage into the small bowel lumen. Clinical manifestations include edema related to hypoalbuminemia (protein-losing enteropathy), asthenia, diarrhea, lymphedema and failure to thrive in children.","definition_xrefs":["Orphanet:90362"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal lymphangiectasia","termid":"MONDO:0018178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"primary intestinal lymphangiectasia","secondary_identifiers":["MEDGEN:444009","GARD:7873","NORD:1609","UMLS:C2931241","SCTID:6124009","ICD9:457.1","icd11.foundation:52162548","OMIM:152800"],"synonyms":[{"name":"Waldmann disease","type":"exact"},{"name":"Waldmann's disease","type":"related"},{"name":"familial Waldmann's disease (type)","type":"related"},{"name":"lymphangiectasia, intestinal","type":"related"},{"name":"primary intestinal lymphangiectasis","type":"related"}],"termid":"MONDO:0007916","xrefs":{"Monarch":{"xref_id":"0007916"}}}


id: FYPO:0000567
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the duration of septum assembly is shorter than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal septum assembly","termid":"FYPO:0000117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000032","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"decreased duration of septum assembly","synonyms":[{"name":"decreased division septum formation involved in mitotic cytokinesis","type":"related"},{"name":"decreased duration of division septum assembly","type":"exact"},{"name":"decreased duration of division septum formation involved in mitotic cytokinesis","type":"exact"},{"name":"decreased duration of septation","type":"broad"},{"name":"decreased duration of septum assembly during mitotic cell cycle","type":"related"},{"name":"decreased duration of septum assembly during vegetative growth","type":"exact"},{"name":"decreased septation","type":"related"},{"name":"decreased septum formation","type":"related"},{"name":"reduced duration of septum assembly","type":"exact"},{"name":"septum formation: decreased","type":"broad"}],"termid":"FYPO:0000567"}


id: PBO:0049343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIi pseudogene 1","termid":"PBO:0049343"}


id: GO:0061687
data:
  {"annotated_genes":["SJAG_01344","SJAG_01351","SJAG_01803","SJAG_00141","SJAG_00988","SJAG_02515","SJAG_04516","SJAG_02599","SJAG_03497","SJAG_01973","SJAG_04823","SJAG_01199","SJAG_01216","SJAG_01078","SJAG_04953"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72743,95253,110406,120213,98960,98998],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098849"},{"annotations":[115740],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140114"},{"annotations":[97148,110813,119373,120310,101958,107013],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061692"},{"annotations":[72742],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010273"},{"annotations":[95716,95717],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010312"}]},"cv_name":"biological_process","definition":"Any process that reduces or removes the toxicity of inorganic compounds. These include transport of such compounds away from sensitive areas and to compartments or complexes whose purpose is sequestration of inorganic compounds.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detoxification","termid":"GO:0098754"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00141":null,"SJAG_00988":null,"SJAG_01078":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_01344":null,"SJAG_01351":null,"SJAG_01803":null,"SJAG_01973":null,"SJAG_02515":null,"SJAG_02599":null,"SJAG_03497":null,"SJAG_04516":null,"SJAG_04823":null,"SJAG_04953":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098754"}],"interesting_parent_ids":["GO:0008150","GO:0098754"],"is_obsolete":false,"name":"detoxification of inorganic compound","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0061687","terms_by_termid":{"GO:0010273":null,"GO:0010312":null,"GO:0061692":null,"GO:0098849":null,"GO:0140114":null}}


id: MONDO:1012446
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"non-specific digestive disorder, non-human animal","termid":"MONDO:1011666"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-specific digestive disorder, rabbit","secondary_identifiers":["OMIA:001768-9986"],"termid":"MONDO:1012446","xrefs":{"Monarch":{"xref_id":"1012446"}}}


id: PATO:0000899
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000899 soma dependent fertility value (obsolete PATO:0000899)","termid":"PATO:0000899"}


id: PBO:0053929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1228","termid":"PBO:0053929"}


id: PBO:0091560
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial Morphology and Distribution","termid":"PBO:0091560"}


id: PBO:0030560
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_binding","termid":"PBO:0030560"}


id: MOD:00169
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to N-cysteinyl-glycosylphosphatidylinositolethanolamine.","definition_xrefs":["RESID:AA0160","PubMed:2897081"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosylphosphatidylinositolated residue","termid":"MOD:00818"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"},{"rel_name":"is_a","termid":"MOD:01155"},{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00905","MOD:01155","MOD:00764"],"is_obsolete":false,"name":"N-cysteinyl-glycosylphosphatidylinositolethanolamine","synonyms":[{"name":"GPICys","type":"exact"},{"name":"LIPID GPI-anchor amidated cysteine","type":"exact"},{"name":"N-cysteinyl-glycosylphosphatidylinositolethanolamine","type":"exact"}],"termid":"MOD:00169"}


id: GO:0090686
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a monoatomic cation by a channel that opens when glycine betaine has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["PMID:24212673","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligand-gated monoatomic cation channel activity","termid":"GO:0099094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"glycine betaine-activated nonselective monoatomic cation channel activity","synonyms":[{"name":"glycine betaine-activated nonselective monovalent cation channel activity","type":"related"}],"termid":"GO:0090686"}


id: PBO:0062417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 53 pseudogene","termid":"PBO:0062417"}


id: MONDO:0700200
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A subset of SLC6A3-related DTDS cases which have later onset which ranges from late childhood to adulthood. This disorder is characterized by the presentation of parkinsonism-dystonia, rigidity, tremor, and bradykinesia after normal childhood development.","definition_xrefs":["PMID:28749637"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SLC6A3-related dopamine transporter deficiency syndrome","termid":"MONDO:0700117"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atypical dopamine transporter deficiency syndrome","secondary_identifiers":["DOID:0070488"],"synonyms":[{"name":"atypical DTDS","type":"exact"}],"termid":"MONDO:0700200","xrefs":{"Monarch":{"xref_id":"0700200"}}}


id: PBO:0109278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3113","termid":"PBO:0109278"}


id: PBO:0069218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 473, pseudogene","termid":"PBO:0069218"}


id: PBO:0003375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA snR3","termid":"PBO:0003375"}


id: MONDO:0001790
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign adipose tissue neoplasm of the spinal cord. It is usually associated with dysraphism in which the intraspinal component communicates with a subcutaneous lipoma through a defect in the posterior elements of the spine. Non-dysraphic intramedullary spinal cord lipomas are very rare.","definition_xrefs":["NCIT:C4619"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system lipoma","termid":"MONDO:0003844"},{"relation_name":"is_a","term_name":"benign neoplasm of spinal cord","termid":"MONDO:0021506"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spinal cord lipoma","secondary_identifiers":["NANDO:2200815","SCTID:189017000","DOID:13743","ICD9:214.8","Orphanet:645276","MEDGEN:91131","UMLS:C0347446"],"synonyms":[{"name":"lipoma of spinal cord","type":"exact"},{"name":"spinal cord lipoma","type":"exact"}],"termid":"MONDO:0001790","xrefs":{"Monarch":{"xref_id":"0001790"}}}


id: GO:0031236
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to its periplasmic surface, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:mtg_sensu","GOC:mah","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of external side of plasma membrane","termid":"GO:0031232"},{"relation_name":"part_of","term_name":"periplasmic side of plasma membrane","termid":"GO:0098567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0009986"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0009986"],"is_obsolete":false,"name":"extrinsic component of periplasmic side of plasma membrane","secondary_identifiers":["GO:0031238"],"synonyms":[{"name":"extrinsic to external leaflet of plasma membrane, in periplasmic space","type":"narrow"},{"name":"extrinsic to external side of plasma membrane, in periplasmic space","type":"narrow"}],"termid":"GO:0031236"}


id: FYPO:0006664
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed during G0 phase in which the nucleus is longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated nucleus","termid":"FYPO:0006663"},{"relation_name":"is_a","term_name":"abnormal nuclear morphology during G0","termid":"FYPO:0006667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002403","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"elongated nucleus during G0","synonyms":[{"name":"elongated nuclei during G0","type":"exact"},{"name":"elongated nucleus during cell quiescence","type":"exact"},{"name":"elongated nucleus during quiescence","type":"exact"},{"name":"long nucleus during G0","type":"exact"}],"termid":"FYPO:0006664"}


id: GO:0051257
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of the spindle midzone, the area in the center of the spindle where the spindle microtubules from opposite poles overlap, as a part of the process of meiosis.","definition_xrefs":["GOC:tb","GOC:expert_rg","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle midzone assembly","termid":"GO:0051255"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"meiotic nuclear division","termid":"GO:0140013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0000226","GO:0140013","GO:0007010","GO:0007049","GO:0044085"],"is_obsolete":false,"name":"meiotic spindle midzone assembly","synonyms":[{"name":"meiotic spindle midzone biogenesis","type":"exact"},{"name":"meiotic spindle midzone biosynthesis","type":"exact"},{"name":"meiotic spindle midzone formation","type":"exact"},{"name":"spindle midzone assembly involved in meiosis","type":"exact"},{"name":"spindle midzone biogenesis involved in meiosis","type":"exact"},{"name":"spindle midzone biosynthesis involved in meiosis","type":"exact"},{"name":"spindle midzone formation involved in meiosis","type":"exact"}],"termid":"GO:0051257"}


id: PBO:0051551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 9 receptor pseudogene 1","termid":"PBO:0051551"}


id: PBO:0028286
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_G2_DNA_damage_checkpoint","termid":"PBO:0028286"}


id: MONDO:1012693
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary melanoma that occurs in melanoma-bearing Libechov minipipgs due to selective breeding for the purpose of creating a swine model of hereditary metastatic melanoma.","definition_xrefs":["PMID:31717496"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"congenital melanoma, pig","termid":"MONDO:1012162"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanoma-bearing Libechov minipig, pig","secondary_identifiers":["OMIA:001480-9823"],"synonyms":[{"name":"MeLiM","type":"exact"}],"termid":"MONDO:1012693","xrefs":{"Monarch":{"xref_id":"1012693"}}}


id: MONDO:0017477
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lower limb hypertrophy is a rare, genetic, non-syndromic developmental defect during embryogenesis characterized by uni- or bilateral overgrowth of lower limbs involving bones and/or soft tissues and resulting in an abnormal increase in leg length and/or width. Hypertrophy presents either as a proportionate overgrowth of entire limb or involves only the proximal or distal parts of it. Phenotype ranges from mild hypertrophy without functional disability to massively hypertrophied limb with knee flexion and ankle equinus contractures and macrodystrophia lipomatosa. Patients may also present vascular abnormalities (e.g. cutaneous angiomas, varicose veins) and myalgia.","definition_xrefs":["Orphanet:295051"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lower limb hypertrophy","secondary_identifiers":["GARD:21213","icd11.foundation:601080430"],"termid":"MONDO:0017477","xrefs":{"Monarch":{"xref_id":"0017477"}}}


id: MONDO:1012981
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Anemia that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hematologic disorder, non-human animal","termid":"MONDO:1011319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anemia, non-human animal","termid":"MONDO:1012981","xrefs":{"Monarch":{"xref_id":"1012981"}}}


id: PBO:0003496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin C-terminal hydrolase Uch2","termid":"PBO:0003496"}


id: PR:Q9P7R3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An exosome complex component MTR3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03895","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome complex component mtr3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC211.08c","secondary_identifiers":["UniProtKB:Q9P7R3"],"synonyms":[{"name":"Spom972h-EXOSC6","type":"exact"}],"termid":"PR:Q9P7R3"}


id: MONDO:0005325
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Traumatic or pathological injury to the radius bone in which the continuity of the bone is broken.","definition_xrefs":["EFO:0003957"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone fracture","termid":"MONDO:0005315"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"radius fracture","secondary_identifiers":["SCTID:12676007","MESH:D011885"],"termid":"MONDO:0005325","xrefs":{"Monarch":{"xref_id":"0005325"}}}


id: GO:1903113
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of copper ion transmembrane transporter activity.","definition_xrefs":["GO_REF:0000088","PMID:23122209","GOC:bhm","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter complex","termid":"GO:1902495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"copper ion transmembrane transporter complex","termid":"GO:1903113"}


id: PR:O94462
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- puf3 gene.","definition_xrefs":["UniProtKB:O94462","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA-binding protein puf3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.22c","synonyms":[{"name":"Spom972h-puf3","type":"exact"},{"name":"pumilio homology domain family member 3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94462"}


id: PBO:0004918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L32","termid":"PBO:0004918"}


id: GO:0090399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which normal somatic cells reach an irreversible stage of cell cycle arrest following multiple rounds of replication; this end stage is associated with marked changes in gene expression and function. This is a natural barrier to unlimited proliferation of somatic cells, and is believed to be contolled by telomere shortening.","definition_xrefs":["PMID:23061726","PMID:17014937"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"replicative senescence","termid":"GO:0090399"}


id: GO:0044636
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the regulation of complement activation via the classical pathway of the bitten/stung organism.","definition_xrefs":["GOC:jl","PMID:20837040","GOC:fj"],"gene_count":0,"genotype_count":0,"name":"obsolete envenomation resulting in modulation of complement activation, classical pathway in another organism (obsolete GO:0044636)","synonyms":[{"name":"envenomation resulting in modulation of complement activation, classical pathway in other organism","type":"exact"}],"termid":"GO:0044636"}


id: PBO:0041450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 9 putative open reading frame 163","termid":"PBO:0041450"}


id: PBO:0080028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 14, pseudogene","termid":"PBO:0080028"}


id: GO:0071316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nicotine stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nicotine","termid":"GO:0035094"},{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to nicotine","termid":"GO:0071316"}


id: GO:0045826
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of intermediate filament polymerization and/or depolymerization.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of intermediate filament polymerization and/or depolymerization (obsolete GO:0045826)","synonyms":[{"name":"positive regulation of intermediate filament polymerization and/or depolymerization","type":"exact"}],"termid":"GO:0045826"}


id: GO:0002002
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that modulates the level of any of the various angiotensinogen proteolytic products in the blood. This occurs by the proteolytic cleavage of angiotensinogen, and its proteolytic products, to create a variety of active peptide hormones, such as angiotensin I and angiotensin II, as well as through the removal of these peptides from the circulation.","definition_xrefs":["GOC:rl","Wikipedia:Angiotensin","PMID:21951628"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hormone levels","termid":"GO:0010817"},{"relation_name":"part_of","term_name":"regulation of systemic arterial blood pressure by circulatory renin-angiotensin","termid":"GO:0001991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of angiotensin levels in blood","synonyms":[{"name":"control of angiotensin levels in blood","type":"related"},{"name":"control of blood angiotensin level","type":"related"},{"name":"regulation of blood angiotensin level","type":"exact"}],"termid":"GO:0002002"}


id: PBO:0071803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reprimo, TP53 dependent G2 arrest mediator homolog","termid":"PBO:0071803"}


id: MONDO:0003692
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant mesenchymoma occurring in adults.","definition_xrefs":["NCIT:C7947"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant mesenchymoma","termid":"MONDO:0003633"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"adult malignant mesenchymoma","secondary_identifiers":["MEDGEN:83523","DOID:5894","UMLS:C0279548"],"synonyms":[{"name":"adult malignant mesenchymoma","type":"exact"},{"name":"malignant mesenchymoma","type":"broad"},{"name":"malignant mesenchymoma of adults","type":"exact"}],"termid":"MONDO:0003692","xrefs":{"Monarch":{"xref_id":"0003692"}}}


id: GO:0075292
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of aplanospore formation, a process in which a nonmotile, asexual spore is formed within a cell in certain algae and fungi (commonly in the Phycomycetes), the wall of aplanospore is distinct from that of the parent cell.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of sporangiospore formation","termid":"GO:0075288"},{"relation_name":"is_a","term_name":"regulation of aplanospore formation","termid":"GO:0075290"},{"relation_name":"negatively_regulates","term_name":"aplanospore formation","termid":"GO:0075289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of aplanospore formation","termid":"GO:0075292"}


id: MONDO:0007528
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Ehlers-Danlos syndrome","termid":"MONDO:0020066"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ehlers-Danlos syndrome, autosomal dominant, type unspecified","secondary_identifiers":["MESH:C562424","UMLS:C0220679","MEDGEN:65083","OMIM:130090"],"synonyms":[{"name":"EDS, unspecified type","type":"related"},{"name":"Ehlers-Danlos syndrome, Friedman-Harrod type","type":"related"},{"name":"Ehlers-Danlos syndrome, autosomal dominant, type unspecified","type":"exact"}],"termid":"MONDO:0007528","xrefs":{"Monarch":{"xref_id":"0007528"}}}


id: PBO:0058744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6868","termid":"PBO:0058744"}


id: PBO:0014262
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"not functionally complemented by S. cerevisiae RAD17","termid":"PBO:0014262"}


id: PBO:0065198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA processing factor 19","termid":"PBO:0065198"}


id: SO:0000038
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A collection of match parts.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000038 match_set (obsolete SO:0000038)","termid":"SO:0000038"}


id: GO:0010916
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of very-low-density lipoprotein particle clearance. Very-low-density lipoprotein particle clearance is the process in which a very-low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.","definition_xrefs":["GOC:tb","GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of very-low-density lipoprotein particle clearance","termid":"GO:0010915"},{"relation_name":"is_a","term_name":"negative regulation of lipoprotein particle clearance","termid":"GO:0010985"},{"relation_name":"negatively_regulates","term_name":"very-low-density lipoprotein particle clearance","termid":"GO:0034447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of very-low-density lipoprotein particle clearance","synonyms":[{"name":"negative regulation of VLDL clearance","type":"exact"},{"name":"negative regulation of VLDL particle clearance","type":"exact"}],"termid":"GO:0010916"}


id: FYPO:0008200
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 occurs to a lower extent than normal at the centromere inner repeat.","direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H3-K9 methylation during vegetative growth","termid":"FYPO:0000872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0002494","FYPO:0001320","FYPO:0002274"],"is_obsolete":false,"name":"decreased histone H3-K9 methylation at centromere inner repeat during vegetative growth","termid":"FYPO:0008200"}


id: PBO:0055033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2448","termid":"PBO:0055033"}


id: GO:0004550
data:
  {"annotated_genes":["SJAG_02887","SJAG_04657"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72928,78035],"is_not":false,"summary":null,"term":"GO:0004550"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate.","definition_xrefs":["EC:2.7.4.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, phosphate group as acceptor","termid":"GO:0016776"},{"relation_name":"is_a","term_name":"nucleobase-containing compound kinase activity","termid":"GO:0019205"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02887":null,"SJAG_04657":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016301","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"nucleoside diphosphate kinase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:NUCLEOSIDE-DIP-KIN-RXN","Reactome:R-HSA-482804","Reactome:R-HSA-6806877","Reactome:R-HSA-9755013","Reactome:R-HSA-482812","Reactome:R-HSA-482621","Reactome:R-HSA-2162096","Reactome:R-HSA-9748999","Reactome:R-HSA-9748969","Reactome:R-HSA-482619"],"synonyms":[{"name":"ATP:nucleoside-diphosphate phosphotransferase activity","type":"related"},{"name":"NDK activity","type":"related"},{"name":"UDP kinase activity","type":"related"},{"name":"nucleoside 5'-diphosphate kinase activity","type":"related"},{"name":"nucleoside 5'-diphosphate phosphotransferase activity","type":"related"},{"name":"nucleoside diphosphate (UDP) kinase activity","type":"related"},{"name":"nucleoside diphosphokinase activity","type":"related"},{"name":"nucleoside-diphosphate kinase activity","type":"exact"},{"name":"nucleotide phosphate kinase activity","type":"related"},{"name":"uridine diphosphate kinase activity","type":"related"}],"termid":"GO:0004550","terms_by_termid":{"GO:0004550":null}}


id: PR:P87121
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A transcription initiation factor TFIID subunit 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00575","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription initiation factor TFIID subunit 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3A12.05c","secondary_identifiers":["UniProtKB:P87121"],"synonyms":[{"name":"Spom972h-TAF2","type":"exact"},{"name":"TBP-associated factor 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87121"}


id: GO:0060646
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized epithelial cell of the mammary placode becomes an internal epithelial cell of the mammary gland bud. Internal cells are small and of irregular shape.","definition_xrefs":["GOC:dph","PMID:12558599"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation involved in mammary gland bud morphogenesis","termid":"GO:0060643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"internal mammary gland bud epithelial cell differentiation","termid":"GO:0060646"}


id: PBO:0090333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER GPI biosynthesis protein Rft1","termid":"PBO:0090333"}


id: GO:0018897
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of the sulfur atom from dibenzothiophene, a substance composed of two benzene rings linked by one sulfide bond and one carbon-carbon bond.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dibenzothiophene desulfurization","secondary_identifiers":["UM-BBD_pathwayID:dbt","MetaCyc:PWY-681"],"synonyms":[{"name":"dibenzothiophene desulphurization","type":"exact"}],"termid":"GO:0018897"}


id: PBO:0121022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RIDA pseudogene 2","termid":"PBO:0121022"}


id: GO:0099509
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that regulates the concentration of calcium in the presynaptic cytosol.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytosolic calcium ion concentration","termid":"GO:0051480"},{"relation_name":"is_a","term_name":"neuron cellular homeostasis","termid":"GO:0070050"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098771"}],"interesting_parent_ids":["GO:0098771","GO:0008150"],"is_obsolete":false,"name":"regulation of presynaptic cytosolic calcium ion concentration","synonyms":[{"name":"regulation of presynaptic cytosolic calcium levels","type":"exact"}],"termid":"GO:0099509"}


id: MONDO:0010212
data:
  {"annotated_genes":["SJAG_00995"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88603],"is_not":false,"summary":null,"term":"MONDO:0010212"}]},"cv_name":"mondo","definition":"Any xeroderma pigmentosum in which the cause of the disease is a mutation in the ERCC2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xeroderma pigmentosum-Cockayne syndrome complex","termid":"MONDO:0016354"},{"relation_name":"is_a","term_name":"xeroderma pigmentosum","termid":"MONDO:0019600"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00995":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0021190"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005066","MONDO:0021190"],"is_obsolete":false,"name":"xeroderma pigmentosum group D","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:16452","DOID:0110845","UMLS:C0268138","MEDGEN:75656","MESH:C562591","Orphanet:276258","SCTID:68637004","NCIT:C3967","OMIM:278730"],"synonyms":[{"name":"ERCC2 xeroderma pigmentosum","type":"exact"},{"name":"XP group D","type":"exact"},{"name":"XP group H","type":"exact"},{"name":"XP, Group D","type":"related"},{"name":"XP, Group H","type":"related"},{"name":"XP, Group H, formerly","type":"related"},{"name":"XP-D","type":"exact"},{"name":"XP4","type":"exact"},{"name":"XP4 xeroderma pigmentosum VIII","type":"related"},{"name":"XP4 xeroderma pigmentosum VIII, formerly","type":"related"},{"name":"XP8","type":"exact"},{"name":"XPD","type":"exact"},{"name":"XPDC","type":"exact"},{"name":"XPH","type":"exact"},{"name":"xeroderma pigmentosum 4","type":"related"},{"name":"xeroderma pigmentosum IV","type":"exact"},{"name":"xeroderma pigmentosum VIII","type":"exact"},{"name":"xeroderma pigmentosum caused by mutation in ERCC2","type":"exact"},{"name":"xeroderma pigmentosum group D","type":"exact"},{"name":"xeroderma pigmentosum group type D","type":"exact"},{"name":"xeroderma pigmentosum, complementation group D","type":"related"},{"name":"xeroderma pigmentosum, complementation group type D","type":"exact"},{"name":"xeroderma pigmentosum, group D","type":"exact"}],"termid":"MONDO:0010212","terms_by_termid":{"MONDO:0010212":null},"xrefs":{"Monarch":{"xref_id":"0010212"}}}


id: PBO:0082670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the Dsl1p tethering complex; this complex interacts with ER SNAREs Sec20p and Use1p; mediates Sey1p-independent homotypic ER fusion; proposed to be involved in protein secretion; localizes to the ER and nuclear envelope","termid":"PBO:0082670"}


id: MONDO:0018213
data:
  {"annotated_genes":["SJAG_02305","SJAG_04178","SJAG_02119"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87845],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013584"},{"annotations":[88877],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008086"},{"annotations":[88981],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013337"}]},"cv_name":"mondo","definition":"Hereditary sensory neuropathy type I (HSN I) is a slowly progressive neurological disorder characterized by prominent predominantly distal sensory loss, autonomic disturbances, autosomal dominant inheritance, and juvenile or adulthood disease onset.","definition_xrefs":["Orphanet:36386"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary sensory and autonomic neuropathy","termid":"MONDO:0015364"},{"relation_name":"is_a","term_name":"disorder of phospholipids, sphingolipids and fatty acids biosynthesis","termid":"MONDO:0018117"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02119":null,"SJAG_02305":null,"SJAG_04178":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0005244","MONDO:0005066","MONDO:0002525"],"is_obsolete":false,"name":"hereditary sensory and autonomic neuropathy type 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["icd11.foundation:1989773046","NORD:1237","UMLS:C0020071","SCTID:397734008","PMID:18348718","MEDGEN:5645","DOID:0070162","GARD:6635"],"synonyms":[{"name":"HSAN 1","type":"related"},{"name":"HSAN1","type":"exact"},{"name":"HSN1","type":"related"},{"name":"Hereditary Sensory Neuropathy Type I","type":"exact"},{"name":"hereditary sensory and autonomic neuropathy type I","type":"exact"},{"name":"hereditary sensory neuropathy type 1","type":"related"},{"name":"neuropathy hereditary sensory and autonomic type 1","type":"related"},{"name":"neuropathy hereditary sensory radicular, autosomal dominant","type":"related"}],"termid":"MONDO:0018213","terms_by_termid":{"MONDO:0008086":null,"MONDO:0013337":null,"MONDO:0013584":null},"xrefs":{"Monarch":{"xref_id":"0018213"}}}


id: PBO:0042438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDC42 binding protein kinase alpha","termid":"PBO:0042438"}


id: PBO:0048450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gall bladder cancer associated suppressor of pyruvate carboxylase lncRNA","termid":"PBO:0048450"}


id: PBO:0080816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-3' exoribonuclease 1","termid":"PBO:0080816"}


id: MONDO:0017396
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"skin disorder","termid":"MONDO:0005093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"toxic dermatosis","secondary_identifiers":["GARD:21171","Orphanet:293815","UMLS:C5680999","MEDGEN:1842825"],"termid":"MONDO:0017396","xrefs":{"Monarch":{"xref_id":"0017396"}}}


id: PBO:0067482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 616, pseudogene","termid":"PBO:0067482"}


id: MONDO:0040673
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant germ cell tumor that affects the peritoneum.","definition_xrefs":["NCIT:C136410"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peritoneum cancer","termid":"MONDO:0002087"},{"relation_name":"is_a","term_name":"extragonadal germ cell cancer","termid":"MONDO:0003113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant peritoneal germ cell tumor","secondary_identifiers":["UMLS:C4526657","MEDGEN:1612836"],"synonyms":[{"name":"malignant peritoneal germ cell tumor","type":"exact"}],"termid":"MONDO:0040673","xrefs":{"Monarch":{"xref_id":"0040673"}}}


id: PR:O74884
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl2402 gene.","definition_xrefs":["UniProtKB:O74884","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L24-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC330.14c","synonyms":[{"name":"Spom972h-rpl2402","type":"exact"}],"termid":"PR:O74884"}


id: PR:Q9UTS7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC977.12 gene.","definition_xrefs":["UniProtKB:Q9UTS7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-asparaginase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC977.12","synonyms":[{"name":"L-asparagine amidohydrolase 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPAC977.12","type":"exact"}],"termid":"PR:Q9UTS7"}


id: PBO:0084021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycosylphosphatidylinositol-dependent cell wall protein; expression is periodic and decreases in respone to ergosterol perturbation or upon entry into stationary phase; depletion increases resistance to lactic acid","termid":"PBO:0084021"}


id: GO:0051503
data:
  {"annotated_genes":["SJAG_03334","SJAG_04328","SJAG_00612","SJAG_02050"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76603],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015866"},{"annotations":[103319],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990554"},{"annotations":[103320],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990553"},{"annotations":[59355],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140021"},{"annotations":[59354,104810],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990544"},{"annotations":[94853],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990549"}]},"cv_name":"biological_process","definition":"The directed movement of adenine nucleotides, ATP, ADP, and/or AMP, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleotide transport","termid":"GO:0015865"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00612":null,"SJAG_02050":null,"SJAG_03334":null,"SJAG_04328":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"adenine nucleotide transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0051503","terms_by_termid":{"GO:0015866":null,"GO:0140021":null,"GO:1990544":null,"GO:1990549":null,"GO:1990553":null,"GO:1990554":null}}


id: GO:0051026
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which a connection between chromatids assembles, indicating where an exchange of homologous segments has taken place by the crossing-over of non-sister chromatids.","definition_xrefs":["PMID:23396135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"homologous chromosome pairing at meiosis","termid":"GO:0007129"},{"relation_name":"part_of","term_name":"reciprocal meiotic recombination","termid":"GO:0007131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006310"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0044085","GO:0006310","GO:0140013","GO:0006259"],"is_obsolete":false,"name":"chiasma assembly","termid":"GO:0051026"}


id: PBO:0086416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative GTPase; associates with free 60S ribosomal subunits in the nucleolus and is required for 60S ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; member of the ODN family of nucleolar G-proteins","termid":"PBO:0086416"}


id: PBO:0054699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2108","termid":"PBO:0054699"}


id: GO:0033544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A fatty acid beta-oxidation pathway by which fatty acids having cis-double bonds on even-numbered carbons are degraded. In this pathway, the intermediate 2,4-dienoyl-CoA is converted to cis-2-enoyl-CoA through one more cycle of the core beta-oxidation pathway. Cis-2-enoyl-CoA cannot be completely degraded via the core beta-oxidation pathway because hydratation of cis-2-enoyl-CoA yields D-3-hydroxyacyl-CoA, which is not a substrate for 3-hydroxylacyl-CoA dehydrogenase. Cis-2-enoyl-CoA must enter the so-called epimerase pathway, which involves converting D-3-hydroxyacyl-CoA to L-3-hydroxyacyl-CoA by 3-hydroxylacyl-CoA epimerase or by two stereo-specific enoyl-CoA hydratases. L-3-hydroxyacyl-CoA then returns to the core beta-oxidation pathway. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).","definition_xrefs":["GOC:mah","MetaCyc:PWY-5138"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid beta-oxidation, unsaturated, even number","termid":"GO:0033542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"fatty acid beta-oxidation, unsaturated, even number, epimerase pathway","termid":"GO:0033544"}


id: GO:0050524
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: coenzyme B + methyl-coenzyme M = coenzyme M-coenzyme B heterodisulfide + methane. Methyl-CoM is also known as 2-(methylthio)ethanesulfonate, coenzyme B as N-(7-mercaptoheptanoyl)threonine 3-O-phosphate, and coenzyme M-coenzyme B heterodisulfide as CoM-S-S-CoB.","definition_xrefs":["EC:2.8.4.1","RHEA:12532"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkylthioltransferase activity","termid":"GO:0050497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016782","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"coenzyme-B sulfoethylthiotransferase activity","secondary_identifiers":["UM-BBD_reactionID:r0356","KEGG_REACTION:R04541","GO:0018552","MetaCyc:METHYL-COM-HTP-RXN"],"synonyms":[{"name":"2-(methylthio)ethanesulfonate:N-(7-thioheptanoyl)-3-O-phosphothreonine S-(2-sulfoethyl)thiotransferase activity","type":"related"},{"name":"coenzyme-B sulphoethylthiotransferase activity","type":"exact"},{"name":"methyl coenzyme M reductase activity","type":"related"},{"name":"methyl-CoM reductase activity","type":"related"},{"name":"methyl-coenzyme-M reductase activity","type":"exact"}],"termid":"GO:0050524"}


id: PBO:0015674
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not functionally complement S. cerevisiae TIF34","termid":"PBO:0015674"}


id: PBO:0087856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional activator for GABA-dependent induction of GABA genes; binds to DNA elements found in the promoters of target genes and increases their expression in the presence of GABA (gamma-aminobutyrate); zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type; localized to the nucleus; examples of GABA genes include UGA1, UGA2, and UGA4","termid":"PBO:0087856"}


id: GO:1900303
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of laminaritriose transport.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transport","termid":"GO:0051049"},{"relation_name":"regulates","term_name":"laminaritriose transport","termid":"GO:2001097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of laminaritriose transport","termid":"GO:1900303"}


id: PBO:0061731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear RNA export factor 4 pseudogene","termid":"PBO:0061731"}


id: GO:0047267
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-mannose + undecaprenyl phosphate = GDP + D-mannosyl-1-phosphoundecaprenol.","definition_xrefs":["EC:2.4.1.54"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannosyltransferase activity","termid":"GO:0000030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"undecaprenyl-phosphate mannosyltransferase activity","synonyms":[{"name":"GDP mannose-undecaprenyl phosphate mannosyltransferase activity","type":"related"},{"name":"GDP-D-mannose:lipid phosphate transmannosylase activity","type":"related"},{"name":"GDP-mannose:undecaprenyl-phosphate D-mannosyltransferase activity","type":"related"},{"name":"guanosine diphosphomannose-undecaprenyl phosphate mannosyltransferase activity","type":"related"}],"termid":"GO:0047267"}


id: PBO:0116703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily I member 1 (gene/pseudogene)","termid":"PBO:0116703"}


id: PBO:0057163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 320b-1","termid":"PBO:0057163"}


id: PBO:0044565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DAZ associated protein 2","termid":"PBO:0044565"}


id: PBO:0050591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock factor binding protein 1 pseudogene 2","termid":"PBO:0050591"}


id: GO:0051136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of natural killer T cell differentiation.","definition_xrefs":["PMID:12154375","PMID:9133426","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of alpha-beta T cell differentiation","termid":"GO:0046637"},{"relation_name":"regulates","term_name":"NK T cell differentiation","termid":"GO:0001865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of NK T cell differentiation","synonyms":[{"name":"regulation of NK T cell development","type":"related"},{"name":"regulation of NK T lymphocyte differentiation","type":"exact"},{"name":"regulation of NK T-cell differentiation","type":"exact"},{"name":"regulation of NK T-lymphocyte differentiation","type":"exact"},{"name":"regulation of NKT cell differentiation","type":"exact"},{"name":"regulation of NT cell differentiation","type":"exact"},{"name":"regulation of natural T cell differentiation","type":"exact"},{"name":"regulation of natural killer T cell differentiation","type":"exact"}],"termid":"GO:0051136"}


id: PBO:0029726
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_separation_after_cytokinesis_resulting_in_septated_cell","termid":"PBO:0029726"}


id: PBO:0067658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 835, pseudogene","termid":"PBO:0067658"}


id: GO:0050698
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + proteoglycan = adenosine 3',5'-bisphosphate + proteoglycan sulfate. A proteoglycan is a glycoprotein whose carbohydrate units are glycosaminoglycans.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfotransferase activity","termid":"GO:0008146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016782","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"proteoglycan sulfotransferase activity","synonyms":[{"name":"proteoglycan sulfate transfer","type":"related"},{"name":"proteoglycan sulphotransferase activity","type":"exact"}],"termid":"GO:0050698"}


id: GO:0032951
data:
  {"annotated_genes":["SJAG_04659","SJAG_04462","SJAG_04771","SJAG_03705","SJAG_00610","SJAG_04509","SJAG_04668","SJAG_04666","SJAG_01255","SJAG_01787"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89841],"is_not":false,"summary":null,"term":"GO:0032951"},{"annotations":[89457,94368],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140748"},{"annotations":[119910,120043,69566,94352,92717,107309,107880],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090334"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways relusting in the formation of beta-glucans.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glucan biosynthetic process","termid":"GO:0010962"},{"relation_name":"is_a","term_name":"regulation of beta-glucan metabolic process","termid":"GO:0032950"},{"relation_name":"regulates","term_name":"beta-glucan biosynthetic process","termid":"GO:0051274"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00610":null,"SJAG_01255":null,"SJAG_01787":null,"SJAG_03705":null,"SJAG_04462":null,"SJAG_04509":null,"SJAG_04659":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"regulation of beta-glucan biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"regulation of beta-glucan anabolism","type":"exact"},{"name":"regulation of beta-glucan biosynthesis","type":"exact"},{"name":"regulation of beta-glucan formation","type":"exact"},{"name":"regulation of beta-glucan synthesis","type":"exact"}],"termid":"GO:0032951","terms_by_termid":{"GO:0032951":null,"GO:0090334":null,"GO:0140748":null}}


id: MONDO:1010944
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mycosis fungoides that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mycosis fungoides, non-human animal","termid":"MONDO:1010211"},{"relation_name":"is_a","term_name":"non-hodgkin lymphoma, domestic cat","termid":"MONDO:1010949"},{"relation_name":"is_a","term_name":"cancer, domestic cat","termid":"MONDO:1012571"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mycosis fungoides, domestic cat","secondary_identifiers":["OMIA:001109-9685"],"termid":"MONDO:1010944","xrefs":{"Monarch":{"xref_id":"1010944"}}}


id: GO:0016721
data:
  {"annotated_genes":["SJAG_00668","SJAG_03303","SJAG_01734","SJAG_04788"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[58635,66405,76101,79122],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004784"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which a superoxide radical (O2- or O2.-) acts as a hydrogen or electron acceptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00668":null,"SJAG_01734":null,"SJAG_03303":null,"SJAG_04788":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on superoxide radicals as acceptor","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"secondary_identifiers":["EC:1.15.-.-"],"termid":"GO:0016721","terms_by_termid":{"GO:0004784":null}}


id: GO:0070023
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that is formed by the association of a heterodimeric interleukin-12 receptor complex with an interleukin-12 heterodimer.","definition_xrefs":["PMID:11900991"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"interleukin-12-interleukin-12 receptor complex","synonyms":[{"name":"IL12-IL12 receptor complex","type":"exact"},{"name":"IL12B-IL12RB1-IL12RB2 complex","type":"narrow"}],"termid":"GO:0070023"}


id: PBO:0045288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynamin 1 pseudogene 39","termid":"PBO:0045288"}


id: GO:0034725
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The controlled breakdown of nucleosomes on newly replicated DNA, coupled to strand elongation.","definition_xrefs":["GOC:mah","PMID:17510629"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA replication-dependent nucleosome disassembly (obsolete GO:0034725)","synonyms":[{"name":"DNA replication-dependent chromatin disassembly","type":"exact"}],"termid":"GO:0034725"}


id: MONDO:1011705
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hematologic disorder, non-human animal","termid":"MONDO:1011319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"combined deficiency of factors VIII, IX, and X, non-human animal","secondary_identifiers":["OMIA:001983"],"termid":"MONDO:1011705","xrefs":{"Monarch":{"xref_id":"1011705"}}}


id: GO:0000266
data:
  {"annotated_genes":["SJAG_04203","SJAG_01212","SJAG_01594","SJAG_02848","SJAG_04732","SJAG_05261","SJAG_03464"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[68294],"is_not":false,"summary":null,"term":"GO:0000266"},{"annotations":[101208,96921,104458,104720],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0090149"},{"annotations":[118301],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0090258"},{"annotations":[110859],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0090141"}]},"cv_name":"biological_process","definition":"The division of a mitochondrion within a cell to form two or more separate mitochondrial compartments.","definition_xrefs":["PMID:11038192"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrion organization","termid":"GO:0007005"},{"relation_name":"is_a","term_name":"organelle fission","termid":"GO:0048285"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01212":null,"SJAG_01594":null,"SJAG_02848":null,"SJAG_03464":null,"SJAG_04203":null,"SJAG_04732":null,"SJAG_05261":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007005"}],"interesting_parent_ids":["GO:0007005","GO:0008150"],"is_obsolete":false,"name":"mitochondrial fission","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrial division","type":"exact"},{"name":"mitochondrial proliferation","type":"related"}],"termid":"GO:0000266","terms_by_termid":{"GO:0000266":null,"GO:0090141":null,"GO:0090149":null,"GO:0090258":null}}


id: FYPO:0007744
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a short spindle assembles during the first meiotic nuclear division, and may begin elongation, but does not elongate normally or completely, and collapses during prophase I. Upon collapse the spindle may break or shrink.","definition_xrefs":["PMID:32723864","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle collapse during meiosis I","termid":"FYPO:0007103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"spindle collapse during meiotic prophase I","synonyms":[{"name":"broken meiotic spindle during prophase I","type":"related"},{"name":"meiotic spindle breakage during prophase I","type":"exact"},{"name":"spindle collapse during prophase I of meiotic cell cycle","type":"related"},{"name":"spindle collapse during prophase of meiosis I","type":"exact"}],"termid":"FYPO:0007744"}


id: MONDO:0976261
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation","termid":"MONDO:0015286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"congenital disorder of glycosylation type 1EE with or without immunodeficiency","secondary_identifiers":["OMIM:621140"],"termid":"MONDO:0976261","xrefs":{"Monarch":{"xref_id":"0976261"}}}


id: BFO:0000054
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"realized_in","termid":"BFO:0000054"}


id: PBO:0001567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Imp4 (predicted)","termid":"PBO:0001567"}


id: PBO:0049635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 38","termid":"PBO:0049635"}


id: PBO:0001350
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"swi5delta rhp57delta double mutant produced each recombination class (gene conversion, crossover and long tract gene conversion) at frequencies similar to that of the rhp51delta single mutant","termid":"PBO:0001350"}


id: MONDO:0011929
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A chromosomal anomaly characterized by distinctive facial dysmorphic features, hypotonia, developmental delay, intellectual disability, seizures, heart defects, hearing impairment and prenatal onset growth deficiency.","definition_xrefs":["Orphanet:1606"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"epilepsy","termid":"MONDO:0005027"},{"relation_name":"excluded_subClassOf","term_name":"obsolete syndrome associated with dilated cardiomyopathy (obsolete MONDO:0016337)","termid":"MONDO:0016337"},{"relation_name":"is_a","term_name":"partial deletion of the short arm of chromosome 1","termid":"MONDO:0016883"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 1p36 deletion syndrome","secondary_identifiers":["OMIM:607872","SCTID:699306003","ICD9:758.39","DECIPHER:18","MESH:C535362","UMLS:C1842870","DOID:0060410","GARD:6082","NANDO:1200682","NCIT:C74983","MEDGEN:334629"],"synonyms":[{"name":"1p telomere deletion syndrome","type":"exact"},{"name":"1p36 deletion syndrome","type":"exact"},{"name":"1p36 microdeletion syndrome","type":"exact"},{"name":"Del(1)(p36)","type":"exact"},{"name":"chromosome 1p36 deletion syndrome","type":"exact"},{"name":"chromosome 1p36 deletion syndrome, distal, isolated cases","type":"exact"},{"name":"deletion 1p36","type":"exact"},{"name":"deletion 1pter","type":"exact"},{"name":"monosomy 1P36 syndrome","type":"related"},{"name":"monosomy 1p36","type":"exact"},{"name":"monosomy 1pter","type":"exact"},{"name":"subtelomeric 1p36 deletion","type":"exact"}],"termid":"MONDO:0011929","xrefs":{"Monarch":{"xref_id":"0011929"}}}


id: PBO:0047493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fem-1 homolog A pseudogene 1","termid":"PBO:0047493"}


id: MONDO:0012823
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"colorectal cancer","termid":"MONDO:0005575"},{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colorectal cancer, susceptibility to, 7","secondary_identifiers":["UMLS:C2677120","MEDGEN:394209","OMIM:612232"],"synonyms":[{"name":"CRCS7","type":"exact"},{"name":"colorectal cancer, susceptibility to, 7","type":"exact"},{"name":"colorectal cancer, susceptibility to, on chromosome 11","type":"related"}],"termid":"MONDO:0012823","xrefs":{"Monarch":{"xref_id":"0012823"}}}


id: PATO:0001506
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's separation of normally joined parts, such as the separation of adjacent bones without fracture or of certain abdominal muscles during pregnancy.","definition_xrefs":["answers.com:answers.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"separated from","termid":"PATO:0001505"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diastatic","termid":"PATO:0001506"}


id: MOD:01589
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to O-(2,4-diacetamido-2,4-dideoxyglucosyl)-L-serine.","definition_xrefs":["PubMed:15249686","RESID:AA0499","PubMed:16949362"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosyl-L-serine","termid":"MOD:00002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O-(2,4-diacetamido-2,4-dideoxyglucosyl)-L-serine","synonyms":[{"name":"(2S)-2-amino-3-[(2,4-diacetamido-2,4-dideoxy-beta-D-glucopyranosyl)oxy]propanoic acid","type":"exact"},{"name":"CARBOHYD O-linked (DADDGlc) serine","type":"exact"},{"name":"DADDGlc","type":"exact"},{"name":"O-(2,4-diacetamido-2,4-dideoxy-D-glucosyl)-L-serine","type":"exact"},{"name":"O-(2,4-diacetamido-2,4-dideoxy-beta-D-glucopyranosyl)-L-serine","type":"exact"},{"name":"O-[2,4-bis(acetylamino)]glucosyl-L-serine","type":"exact"},{"name":"O-seryl-beta-2,4-bis(acetylamino)glucoside","type":"exact"},{"name":"O3-(2,4-diacetamido-2,4-dideoxy-beta-D-glucopyranosyl)-L-serine","type":"exact"}],"termid":"MOD:01589"}


id: MOD:01905
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to 5-hydroxy-3-methyl-L-proline.","definition_xrefs":["RESID:AA0473","PubMed:8557573","PubMed:7592021"],"direct_ancestors":[{"relation_name":"has_functional_parent","term_name":"monohydroxylated proline","termid":"MOD:01024"},{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-hydroxy-3-methyl-L-proline","synonyms":[{"name":"(2S,3S,5Xi)-5-hydroxy-3-methylpyrrolidine-2-carboxylic acid","type":"exact"},{"name":"5-hydroxy-3-methyl-L-proline","type":"exact"},{"name":"5-hydroxy-3-methylproline","type":"exact"},{"name":"5Hy3MePro","type":"exact"},{"name":"MOD_RES 5-hydroxy-3-methylproline (Ile)","type":"exact"},{"name":"beta-methyl-delta-hydroxyproline","type":"exact"}],"termid":"MOD:01905"}


id: MONDO:0017147
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Idiopathic pulmonary arterial hypertension (IPAH) is a sporadic form of pulmonary arterial hypertension (PAH) characterized by elevated pulmonary arterial resistance leading to right heart failure. IPAH is progressive and potentially fatal and not associated with an underlying condition or family history of PAH.","definition_xrefs":["Orphanet:275766"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pulmonary arterial hypertension","termid":"MONDO:0015924"},{"relation_name":"is_a","term_name":"idiopathic disease","termid":"MONDO:0700007"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"idiopathic pulmonary arterial hypertension","secondary_identifiers":["MEDGEN:468368","ICD9:416.0","NANDO:2201046","UMLS:C3203102","icd11.foundation:265520344","SCTID:697898008","GARD:21025","MedDRA:10065151"],"synonyms":[{"name":"IPAH","type":"exact"},{"name":"primary pulmonary arterial hypertension","type":"exact"}],"termid":"MONDO:0017147","xrefs":{"Monarch":{"xref_id":"0017147"}}}


id: MONDO:0002317
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An illusion of movement, either of the external world revolving around the individual or of the individual revolving in space. Vertigo may be associated with disorders of the inner ear (ear, inner); vestibular nerve; brainstem; or cerebral cortex. Lesions in the temporal lobe and parietal lobe may be associated with focal seizures that may feature vertigo as an ictal manifestation. (From Adams et al., Principles of Neurology, 6th ed, pp300-1)","definition_xrefs":["MESH:D014717"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"central nervous system origin vertigo","secondary_identifiers":["MEDGEN:56365","UMLS:C0155503","SCTID:38403006","DOID:2479","ICD9:386.2"],"synonyms":[{"name":"central vestibular vertigo","type":"exact"},{"name":"vertigo of central origin","type":"exact"}],"termid":"MONDO:0002317","xrefs":{"Monarch":{"xref_id":"0002317"}}}


id: GO:0035741
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of an activated CD4-positive, alpha-beta T cell population by cell division.","definition_xrefs":["GOC:BHF","CL:0000896"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CD4-positive, alpha-beta T cell proliferation","termid":"GO:0035739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"activated CD4-positive, alpha-beta T cell proliferation","termid":"GO:0035741"}


id: GO:1905140
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of apical ectodermal ridge formation.","definition_xrefs":["GOC:TermGenie","PMID:18359901","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure morphogenesis","termid":"GO:0022603"},{"relation_name":"regulates","term_name":"apical ectodermal ridge formation","termid":"GO:1905139"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of apical ectodermal ridge formation","synonyms":[{"name":"regulation of AER formation","type":"related"},{"name":"regulation of apical epidermal ridge formation","type":"exact"},{"name":"regulation of crista ectodermalis apicalis formation","type":"related"}],"termid":"GO:1905140"}


id: PBO:0045098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DM1 locus antisense RNA","termid":"PBO:0045098"}


id: PBO:0003868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIM22 inner membrane protein import complex anchor subunit Tim18","termid":"PBO:0003868"}


id: FYECO:0000085
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which glutamine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ glutamine","termid":"FYECO:0000085"}


id: PBO:0112605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein, implicated in transmembrane transport or endocytosis","termid":"PBO:0112605"}


id: PBO:0027860
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_kinase_activity_during_cellular_response_to_DNA_damage","termid":"PBO:0027860"}


id: PBO:0077890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor protein p63 regulated 1 like pseudogene 1","termid":"PBO:0077890"}


id: MONDO:0013118
data:
  {"annotated_genes":["SJAG_01677"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87452],"is_not":false,"summary":null,"term":"MONDO:0013118"}]},"cv_name":"mondo","definition":"Nijmegen breakage syndrome-like disorder is a rare, genetic multiple congenital anomalies/dysmorphic syndrome characterized by growth retardation, short stature, developmental delay, intellectual disability, craniofacial dysmorphism (i.e. severe microcephaly, sloping forehead, prominent eyes, broad nasal ridge, hypoplastic nasal septum, epicanthal folds), spontaneous chromosomal instability, cellular hypersensitivity to ionizing radiation and radioresistant DNA synthesis, without severe infections, immunodeficiency or cancer predisposition. Additional reported features include mild spasticity, slight and nonprogressive ataxia, hyperopia, multiple pigmented nevi, widely spaced nipples, and clinodactyly.","definition_xrefs":["Orphanet:240760"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"developmental anomaly of metabolic origin","termid":"MONDO:0015327"},{"relation_name":"is_a","term_name":"DNA repair disease","termid":"MONDO:0021190"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01677":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0021190"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0021190"],"is_obsolete":false,"name":"Nijmegen breakage syndrome-like disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["icd11.foundation:1014526672","UMLS:C2751318","MESH:C567767","GARD:17184","NCIT:C153178","SCTID:766753005","MEDGEN:442700","OMIM:613078"],"synonyms":[{"name":"NBSLD","type":"exact"},{"name":"NBs-like disorder","type":"exact"},{"name":"Nijmegen breakage syndrome-like disorder","type":"exact"},{"name":"RAD50 deficiency","type":"exact"},{"name":"Rad50 deficiency","type":"related"},{"name":"microcephaly and chromosomal instability without immunodeficiency","type":"exact"},{"name":"microcephaly and spontaneous chromosome instability without immunodeficiency","type":"related"}],"termid":"MONDO:0013118","terms_by_termid":{"MONDO:0013118":null},"xrefs":{"Monarch":{"xref_id":"0013118"}}}


id: MONDO:0044915
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An aggressive, high grade adenocarcinoma that arises from the salivary glands. It usually affects elderly males and presents as a rapidly enlarging mass. It metastasizes to regional lymph nodes and distant anatomic sites.","definition_xrefs":["NCIT:C5904"],"direct_ancestors":[{"relation_name":"is_a","term_name":"salivary gland carcinoma","termid":"MONDO:0000521"},{"relation_name":"is_a","term_name":"cribriform carcinoma","termid":"MONDO:0006176"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"salivary duct carcinoma","secondary_identifiers":["MEDGEN:220969","ONCOTREE:SDCA","UMLS:C1301194"],"synonyms":[{"name":"carcinoma of duct of salivary gland","type":"exact"},{"name":"carcinoma of salivary duct","type":"exact"},{"name":"carcinoma of the salivary duct","type":"exact"},{"name":"duct of salivary gland carcinoma","type":"exact"},{"name":"high grade salivary duct carcinoma","type":"exact"},{"name":"salivary duct carcinoma","type":"exact"}],"termid":"MONDO:0044915","xrefs":{"Monarch":{"xref_id":"0044915"}}}


id: SO:0000394
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U6atac_snRNA (SO:0000397).","definition_xrefs":["PMID:12409455"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA","termid":"SO:0000274"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U4atac_snRNA","synonyms":[{"name":"U4atac small nuclear RNA","type":"exact"},{"name":"U4atac snRNA","type":"exact"},{"name":"small nuclear RNA U4atac","type":"exact"},{"name":"snRNA U4atac","type":"exact"}],"termid":"SO:0000394"}


id: GO:0032747
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-23 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-23 production","termid":"GO:0032667"},{"relation_name":"positively_regulates","term_name":"interleukin-23 production","termid":"GO:0032627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of interleukin-23 production","secondary_identifiers":["GO:0045398"],"synonyms":[{"name":"activation of interleukin-23 production","type":"narrow"},{"name":"positive regulation of IL-23 production","type":"exact"},{"name":"positive regulation of interleukin-23 biosynthetic process","type":"narrow"},{"name":"stimulation of interleukin-23 production","type":"narrow"},{"name":"up regulation of interleukin-23 production","type":"exact"},{"name":"up-regulation of interleukin-23 production","type":"exact"},{"name":"upregulation of interleukin-23 production","type":"exact"}],"termid":"GO:0032747"}


id: PBO:0000860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA stability protein Igo1 (predicted)","termid":"PBO:0000860"}


id: GO:0140865
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by interleukin-22 binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:34755534"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"interleukin-22-mediated signaling pathway","synonyms":[{"name":"IL-22-mediated signaling pathway","type":"exact"},{"name":"interleukin-22-mediated signalling pathway","type":"exact"}],"termid":"GO:0140865"}


id: GO:1903799
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of microRNA processing.","definition_xrefs":["GOC:rph","GO_REF:0000058","PMID:22269326","GOC:BHF","GOC:TermGenie","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of gene expression","termid":"GO:0010629"},{"relation_name":"is_a","term_name":"negative regulation of miRNA-mediated gene silencing","termid":"GO:0060965"},{"relation_name":"is_a","term_name":"regulation of miRNA processing","termid":"GO:1903798"},{"relation_name":"negatively_regulates","term_name":"miRNA processing","termid":"GO:0035196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of miRNA processing","synonyms":[{"name":"down regulation of gene silencing by miRNA, production of miRNAs","type":"exact"},{"name":"down regulation of miRNA biogenesis","type":"related"},{"name":"down regulation of miRNA processing","type":"exact"},{"name":"down regulation of miRNA-mediated gene silencing, production of miRNAs","type":"exact"},{"name":"down regulation of microRNA biogenesis","type":"related"},{"name":"down regulation of microRNA biosynthesis","type":"related"},{"name":"down regulation of microRNA biosynthetic process","type":"related"},{"name":"down regulation of microRNA metabolic process","type":"related"},{"name":"down regulation of microRNA metabolism","type":"related"},{"name":"down regulation of microRNA-mediated gene silencing, production of microRNAs","type":"exact"},{"name":"down regulation of production of miRNAs involved in gene silencing by miRNA","type":"exact"},{"name":"down regulation of production of microRNAs involved in gene silencing by microRNA","type":"exact"},{"name":"down-regulation of gene silencing by miRNA, production of miRNAs","type":"exact"},{"name":"down-regulation of miRNA biogenesis","type":"related"},{"name":"down-regulation of miRNA processing","type":"exact"},{"name":"down-regulation of miRNA-mediated gene silencing, production of miRNAs","type":"exact"},{"name":"down-regulation of microRNA biogenesis","type":"related"},{"name":"down-regulation of microRNA biosynthesis","type":"related"},{"name":"down-regulation of microRNA biosynthetic process","type":"related"},{"name":"down-regulation of microRNA metabolic process","type":"related"},{"name":"down-regulation of microRNA metabolism","type":"related"},{"name":"down-regulation of microRNA-mediated gene silencing, production of microRNAs","type":"exact"},{"name":"down-regulation of production of miRNAs involved in gene silencing by miRNA","type":"exact"},{"name":"down-regulation of production of microRNAs involved in gene silencing by microRNA","type":"exact"},{"name":"downregulation of gene silencing by miRNA, production of miRNAs","type":"exact"},{"name":"downregulation of miRNA biogenesis","type":"related"},{"name":"downregulation of miRNA processing","type":"exact"},{"name":"downregulation of miRNA-mediated gene silencing, production of miRNAs","type":"exact"},{"name":"downregulation of microRNA biogenesis","type":"related"},{"name":"downregulation of microRNA biosynthesis","type":"related"},{"name":"downregulation of microRNA biosynthetic process","type":"related"},{"name":"downregulation of microRNA metabolic process","type":"related"},{"name":"downregulation of microRNA metabolism","type":"related"},{"name":"downregulation of microRNA-mediated gene silencing, production of microRNAs","type":"exact"},{"name":"downregulation of production of miRNAs involved in gene silencing by miRNA","type":"exact"},{"name":"downregulation of production of microRNAs involved in gene silencing by microRNA","type":"exact"},{"name":"inhibition of gene silencing by miRNA, production of miRNAs","type":"narrow"},{"name":"inhibition of miRNA biogenesis","type":"related"},{"name":"inhibition of miRNA processing","type":"narrow"},{"name":"inhibition of miRNA-mediated gene silencing, production of miRNAs","type":"narrow"},{"name":"inhibition of microRNA biogenesis","type":"related"},{"name":"inhibition of microRNA biosynthesis","type":"related"},{"name":"inhibition of microRNA biosynthetic process","type":"related"},{"name":"inhibition of microRNA metabolic process","type":"related"},{"name":"inhibition of microRNA metabolism","type":"related"},{"name":"inhibition of microRNA-mediated gene silencing, production of microRNAs","type":"narrow"},{"name":"inhibition of production of miRNAs involved in gene silencing by miRNA","type":"narrow"},{"name":"inhibition of production of microRNAs involved in gene silencing by microRNA","type":"narrow"},{"name":"negative regulation of gene silencing by miRNA, production of miRNAs","type":"exact"},{"name":"negative regulation of miRNA biogenesis","type":"related"},{"name":"negative regulation of miRNA maturation","type":"narrow"},{"name":"negative regulation of miRNA-mediated gene silencing, production of miRNAs","type":"exact"},{"name":"negative regulation of microRNA biogenesis","type":"related"},{"name":"negative regulation of microRNA biosynthesis","type":"related"},{"name":"negative regulation of microRNA biosynthetic process","type":"related"},{"name":"negative regulation of microRNA metabolic process","type":"related"},{"name":"negative regulation of microRNA metabolism","type":"related"},{"name":"negative regulation of microRNA-mediated gene silencing, production of microRNAs","type":"exact"},{"name":"negative regulation of production of miRNAs involved in gene silencing by miRNA","type":"related"},{"name":"negative regulation of production of microRNAs involved in gene silencing by microRNA","type":"exact"}],"termid":"GO:1903799"}


id: GO:0045276
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A part of the respiratory chain located in the plasma membrane, containing about 10 polypeptide subunits including four redox centers: cytochrome b/b6, cytochrome c1 and an 2Fe-2S cluster. Catalyzes the oxidation of ubiquinol by oxidized cytochrome c1. Examples of this component are found in bacterial species.","definition_xrefs":["GOC:mtg_sensu","ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete plasma membrane respiratory chain complex III (obsolete GO:0045276)","synonyms":[{"name":"plasma membrane coenzyme Q-cytochrome c oxidoreductase complex","type":"exact"},{"name":"plasma membrane coenzyme Q-cytochrome c reductase complex","type":"exact"},{"name":"plasma membrane cytochrome bc1 complex","type":"exact"},{"name":"plasma membrane ubiquinol-cytochrome-c reductase complex","type":"exact"},{"name":"respiratory chain complex III","type":"broad"},{"name":"ubiquinol-cytochrome c oxidoreductase complex","type":"broad"},{"name":"ubiquinol-cytochrome-c reductase complex","type":"broad"}],"termid":"GO:0045276"}


id: MONDO:0021113
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The significant impairment of gas exchange within the lungs resulting in hypoxia, hypercarbia, or both, to the extent that organ tissue perfusion is severely compromised. Causes include chronic obstructive pulmonary disease, asthma, emphysema, acute respiratory distress syndrome, pneumonia, pulmonary edema, pneumothorax, and congestive heart failure. Treatment requires intubation and mechanical ventilation until the time the lungs recover sufficient function.","definition_xrefs":["NCIT:C26872"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lung disorder","termid":"MONDO:0005275"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"respiratory failure","secondary_identifiers":["SCTID:39871006","EFO:0009686","ICD9:518.83","DOID:11162","UMLS:C1145670","MEDGEN:257837","ICD9:518.81","icd11.foundation:370028006","MESH:D012131"],"synonyms":[{"name":"acute and chronic respiratory failure","type":"related"},{"name":"acute respiratory failure","type":"narrow"},{"name":"acute-on-chronic respiratory failure","type":"related"},{"name":"chronic respiratory failure","type":"narrow"},{"name":"failure, respiratory","type":"exact"},{"name":"respiratory failure","type":"exact"},{"name":"respiratory insufficiency/failure","type":"exact"}],"termid":"MONDO:0021113","xrefs":{"Monarch":{"xref_id":"0021113"}}}


id: PBO:0046444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epsin 3","termid":"PBO:0046444"}


id: GO:1901456
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of response to toluene.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"is_a","term_name":"regulation of response to toluene","termid":"GO:1901454"},{"relation_name":"positively_regulates","term_name":"response to toluene","termid":"GO:1901424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to toluene","synonyms":[{"name":"activation of response to toluene","type":"narrow"},{"name":"up regulation of response to toluene","type":"exact"},{"name":"up-regulation of response to toluene","type":"exact"},{"name":"upregulation of response to toluene","type":"exact"}],"termid":"GO:1901456"}


id: GO:0061661
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of FAT10 to a substrate protein via the reaction X-FAT10 + S = X + S-FAT10, where X is either an E2 or E3 enzyme, the X-FAT10 linkage is a thioester bond, and the S-FAT10 linkage is an isopeptide bond between the C-terminal glycine of FAT10 and the epsilon-amino group of lysine residues in the substrate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"FAT10 transferase activity","termid":"GO:0019775"},{"relation_name":"is_a","term_name":"ubiquitin-like protein ligase activity","termid":"GO:0061659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0019787"}],"interesting_parent_ids":["GO:0019787","GO:0140096","GO:0016740","GO:0003674","GO:0016746","GO:0003824"],"is_obsolete":false,"name":"FAT10 ligase activity","synonyms":[{"name":"E3","type":"broad"}],"termid":"GO:0061661"}


id: MONDO:0014702
data:
  {"annotated_genes":["SJAG_00660","SJAG_03457"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86916,86917],"is_not":false,"summary":null,"term":"MONDO:0014702"}]},"cv_name":"mondo","definition":"Any autosomal recessive complex spastic paraplegia in which the cause of the disease is a mutation in the ALDH18A1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"complex hereditary spastic paraplegia","termid":"MONDO:0015150"},{"relation_name":"is_a","term_name":"P5CS deficiency","termid":"MONDO:0100126"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00660":null,"SJAG_03457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"autosomal recessive complex spastic paraplegia type 9B","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0110825","GARD:17770","OMIM:616586","Orphanet:447760","UMLS:C5568980","MEDGEN:1800403"],"synonyms":[{"name":"ALDH18A1 autosomal recessive complex spastic paraplegia","type":"exact"},{"name":"AR-SPG9B","type":"exact"},{"name":"SPG9B","type":"exact"},{"name":"autosomal recessive complex spastic paraplegia caused by mutation in ALDH18A1","type":"exact"},{"name":"autosomal recessive complex spastic paraplegia type 9B","type":"exact"},{"name":"autosomal recessive spastic paraplegia 9B","type":"exact"},{"name":"hereditary spastic paraplegia 9B","type":"related"},{"name":"hereditary spastic paraplegia type 9B","type":"exact"},{"name":"spastic paraplegia 9B, autosomal recessive","type":"related"}],"termid":"MONDO:0014702","terms_by_termid":{"MONDO:0014702":null},"xrefs":{"Monarch":{"xref_id":"0014702"}}}


id: PBO:0083166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps verified ORF MAK3/YPR051W","termid":"PBO:0083166"}


id: PBO:0071704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 2","termid":"PBO:0071704"}


id: GO:0043182
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of transporting sodium ions into, and confining within, a vacuole.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vacuolar sequestering","termid":"GO:0043181"},{"relation_name":"part_of","term_name":"intracellular sodium ion homeostasis","termid":"GO:0006883"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0098771"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0098771"],"is_obsolete":false,"name":"vacuolar sequestering of sodium ion","synonyms":[{"name":"sequestering of sodium ion (Na+) in vacuole","type":"exact"},{"name":"sequestration of sodium ion (Na+) in vacuole","type":"exact"},{"name":"sodium ion (Na+) retention in vacuole","type":"exact"},{"name":"sodium ion (Na+) storage in vacuole","type":"exact"},{"name":"vacuolar sequestering of sodium ion (Na+)","type":"exact"},{"name":"vacuolar sequestration of sodium ion (Na+)","type":"exact"},{"name":"vacuolar sodium ion (Na+) retention","type":"exact"},{"name":"vacuolar sodium ion (Na+) storage","type":"exact"}],"termid":"GO:0043182"}


id: GO:0075080
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of receptor-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation by host of symbiont receptor-mediated signal transduction (obsolete GO:0075080)","termid":"GO:0075080"}


id: MONDO:0005005
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant epithelial neoplasm of the kidney characterized by the presence of lipid-containing clear cells within a vascular network. The tumor may metastasize to unusual sites and late metastasis is common.","definition_xrefs":["NCIT:C4033"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clear cell adenocarcinoma","termid":"MONDO:0005004"},{"relation_name":"is_a","term_name":"renal cell adenocarcinoma","termid":"MONDO:0005549"},{"relation_name":"is_a","term_name":"nonpapillary renal cell carcinoma","termid":"MONDO:0007763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005240"],"is_obsolete":false,"name":"clear cell renal carcinoma","secondary_identifiers":["GARD:9574","SCTID:254915003","EFO:0000349","ICD9:189.0","MEDGEN:76018","Orphanet:319276","UMLS:C0279702","ONCOTREE:CCRCC","DOID:4467"],"synonyms":[{"name":"Grawitz tumor","type":"exact"},{"name":"Grawitz tumour","type":"exact"},{"name":"RCC, clear cell adenocarcinoma","type":"exact"},{"name":"clear cell adenocarcinoma of kidney","type":"exact"},{"name":"clear cell adenocarcinoma of the kidney","type":"exact"},{"name":"clear cell adenocarcinoma, kidney","type":"exact"},{"name":"clear cell carcinoma of kidney","type":"exact"},{"name":"clear cell carcinoma of the kidney","type":"exact"},{"name":"clear cell kidney carcinoma","type":"exact"},{"name":"clear cell renal cell cancer","type":"exact"},{"name":"clear cell renal cell carcinoma","type":"exact"},{"name":"clear-cell metastatic renal cell carcinoma","type":"related"},{"name":"conventional (clear cell) renal cell adenocarcinoma","type":"exact"},{"name":"conventional (clear cell) renal cell carcinoma","type":"exact"},{"name":"conventional renal cell carcinoma","type":"exact"},{"name":"hypernephroma","type":"related"},{"name":"kidney clear cell adenocarcinoma","type":"exact"},{"name":"kidney clear cell carcinoma","type":"exact"},{"name":"renal cell carcinoma, clear cell adenocarcinoma","type":"exact"},{"name":"renal clear cell adenocarcinoma","type":"exact"},{"name":"renal clear cell carcinoma","type":"exact"}],"termid":"MONDO:0005005","xrefs":{"Monarch":{"xref_id":"0005005"}}}


id: PBO:0031281
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-transport_phenotype","termid":"PBO:0031281"}


id: MONDO:0027750
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete serpinopathy with toxic serpin polymerization (obsolete MONDO:0027750)","secondary_identifiers":["Orphanet:250808"],"termid":"MONDO:0027750","xrefs":{"Monarch":{"xref_id":"0027750"}}}


id: MONDO:0002244
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A coagulation disorder characterized by the partial or complete absence of factor VII activity in the blood.","definition_xrefs":["NCIT:C131631"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coagulation protein disease","termid":"MONDO:0002242"},{"relation_name":"is_a","term_name":"hemorrhagic disease","termid":"MONDO:0002243"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"factor VII deficiency","secondary_identifiers":["ICD9:286.3","NANDO:2200675","SCTID:37193007","MEDGEN:8769","MESH:D005168","UMLS:C0015503"],"synonyms":[{"name":"F7 deficiency","type":"exact"},{"name":"deficiency, stable","type":"exact"},{"name":"factor 7 deficiency","type":"exact"},{"name":"factor VII deficiency","type":"exact"}],"termid":"MONDO:0002244","xrefs":{"Monarch":{"xref_id":"0002244"}}}


id: MONDO:0012447
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic synpolydactyly","termid":"MONDO:0000722"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synpolydactyly type 3","secondary_identifiers":["MESH:C565216","GARD:17360","OMIM:610234","Orphanet:295199","UMLS:C1853255","icd11.foundation:1671501762","MEDGEN:344005"],"synonyms":[{"name":"SD2, Malik type","type":"exact"},{"name":"SD2c","type":"exact"},{"name":"SPD, Malik type","type":"exact"},{"name":"SPD3","type":"exact"},{"name":"synpolydactyly 3","type":"related"},{"name":"synpolydactyly, Malik type","type":"exact"}],"termid":"MONDO:0012447","xrefs":{"Monarch":{"xref_id":"0012447"}}}


id: GO:2000750
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of establishment or maintenance of bipolar cell polarity regulating cell shape.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of establishment or maintenance of bipolar cell polarity regulating cell shape","termid":"GO:2000100"},{"relation_name":"is_a","term_name":"negative regulation of establishment or maintenance of cell polarity regulating cell shape","termid":"GO:2000770"},{"relation_name":"negatively_regulates","term_name":"establishment or maintenance of bipolar cell polarity regulating cell shape","termid":"GO:0061246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007163"},{"rel_name":"negatively_regulates","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0008150","GO:0007163"],"is_obsolete":false,"name":"negative regulation of establishment or maintenance of bipolar cell polarity regulating cell shape","termid":"GO:2000750"}


id: GO:1902083
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of peptidyl-cysteine S-nitrosylation.","definition_xrefs":["GOC:rl","GOC:TermGenie","PMID:19198614","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein modification process","termid":"GO:0031400"},{"relation_name":"is_a","term_name":"regulation of peptidyl-cysteine S-nitrosylation","termid":"GO:2000169"},{"relation_name":"negatively_regulates","term_name":"peptidyl-cysteine S-nitrosylation","termid":"GO:0018119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of peptidyl-cysteine S-nitrosylation","synonyms":[{"name":"down regulation of S-nitrosylation","type":"exact"},{"name":"down regulation of peptidyl-cysteine S-nitrosylation","type":"exact"},{"name":"down regulation of protein S-nitrosylation","type":"exact"},{"name":"down-regulation of S-nitrosylation","type":"exact"},{"name":"down-regulation of peptidyl-cysteine S-nitrosylation","type":"exact"},{"name":"down-regulation of protein S-nitrosylation","type":"exact"},{"name":"downregulation of S-nitrosylation","type":"exact"},{"name":"downregulation of peptidyl-cysteine S-nitrosylation","type":"exact"},{"name":"downregulation of protein S-nitrosylation","type":"exact"},{"name":"inhibition of S-nitrosylation","type":"exact"},{"name":"inhibition of peptidyl-cysteine S-nitrosylation","type":"narrow"},{"name":"inhibition of protein S-nitrosylation","type":"exact"},{"name":"negative regulation of S-nitrosylation","type":"exact"},{"name":"negative regulation of protein S-nitrosylation","type":"exact"}],"termid":"GO:1902083"}


id: PBO:0082544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cell wall protein that contains a putative GPI-attachment site; secreted by regenerating protoplasts; up-regulated by activation of the cell integrity pathway, as mediated by Rlm1p; upregulated by cell wall damage via disruption of FKS1; PST1 has a paralog, ECM33, that arose from the whole genome duplication","termid":"PBO:0082544"}


id: PBO:0001047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Tsr1 (predicted)","termid":"PBO:0001047"}


id: GO:0036405
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the cell outer membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.","definition_xrefs":["GOC:dos","GOC:md"],"gene_count":0,"genotype_count":0,"name":"obsolete anchored component of cell outer membrane (obsolete GO:0036405)","synonyms":[{"name":"anchored to cell outer membrane","type":"narrow"}],"termid":"GO:0036405"}


id: PBO:0027733
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_cell_cycle_DNA_replication_checkpoint","termid":"PBO:0027733"}


id: GO:1903166
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a polycyclic arene stimulus.","definition_xrefs":["PMID:10998501","GOC:mr","GO_REF:0000071","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"},{"relation_name":"is_a","term_name":"response to polycyclic arene","termid":"GO:1903165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to polycyclic arene","termid":"GO:1903166"}


id: MONDO:0043723
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fracture in the proximal half of the shaft of the ulna, with dislocation of the head of the radius.","definition_xrefs":["MESH:D009011"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ulna fracture","termid":"MONDO:0005322"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Monteggia's fracture","secondary_identifiers":["SCTID:123973009"],"synonyms":[{"name":"Monteggia fracture","type":"related"},{"name":"Monteggias fracture","type":"related"},{"name":"fracture, Monteggia's","type":"related"},{"name":"monteggia fracture","type":"related"},{"name":"monteggia fracture dislocation","type":"related"},{"name":"monteggia's dislocation","type":"related"},{"name":"monteggia's fracture","type":"exact"}],"termid":"MONDO:0043723","xrefs":{"Monarch":{"xref_id":"0043723"}}}


id: MONDO:0009898
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polysaccharide, storage of unusual","secondary_identifiers":["UMLS:C1849721","OMIM:263600","MESH:C564877","MEDGEN:376645"],"synonyms":[{"name":"polysaccharide, storage of unusual","type":"exact"}],"termid":"MONDO:0009898","xrefs":{"Monarch":{"xref_id":"0009898"}}}


id: PBO:0046262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EMC1 antisense RNA 1","termid":"PBO:0046262"}


id: MONDO:0000145
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete premature aging syndrome (obsolete MONDO:0000145)","termid":"MONDO:0000145","xrefs":{"Monarch":{"xref_id":"0000145"}}}


id: FYPO:0000589
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the rate, or speed, of ascospore formation is increased, i.e. sporulation takes place more rapidly than in wild type.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal sporulation","termid":"FYPO:0000121"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000121"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0000121","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased rate of sporulation","synonyms":[{"name":"increased rate of ascospore formation","type":"exact"},{"name":"sporulation: increased rate","type":"related"}],"termid":"FYPO:0000589"}


id: MONDO:0011395
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cone-rod dystrophy in which the cause of the disease is a mutation in the ABCA4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cone-rod dystrophy","termid":"MONDO:0015993"},{"relation_name":"is_a","term_name":"ABCA4-related retinopathy","termid":"MONDO:0800406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cone-rod dystrophy 3","secondary_identifiers":["DOID:0111013","MEDGEN:349030","MESH:C565827","OMIM:604116","UMLS:C1858806","GARD:10653"],"synonyms":[{"name":"ABCA4 cone-rod dystrophy","type":"exact"},{"name":"CORD3","type":"exact"},{"name":"cone-rod dystrophy 3","type":"exact"},{"name":"cone-rod dystrophy caused by mutation in ABCA4","type":"exact"},{"name":"cone-rod dystrophy type 3","type":"exact"}],"termid":"MONDO:0011395","xrefs":{"Monarch":{"xref_id":"0011395"}}}


id: PBO:0066608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rhox homeobox family member 1","termid":"PBO:0066608"}


id: GO:0047992
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: erythro-5-hydroxy-L-lysine + GTP = 5-phosphonooxy-L-lysine + GDP + 2 H+.","definition_xrefs":["EC:2.7.1.81","RHEA:19049"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"amino acid kinase activity","termid":"GO:0019202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016301","GO:0016740"],"is_obsolete":false,"name":"hydroxylysine kinase activity","secondary_identifiers":["KEGG_REACTION:R03378","MetaCyc:HYDROXYLYSINE-KINASE-RXN","Reactome:R-HSA-6788611"],"synonyms":[{"name":"GTP:5-hydroxy-L-lysine O-phosphotransferase activity","type":"related"},{"name":"guanosine triphosphate:5-hydroxy-L-lysine O-phosphotransferase activity","type":"related"},{"name":"hydroxylysine kinase (phosphorylating)","type":"related"}],"termid":"GO:0047992"}


id: PBO:0048944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgi SNAP receptor complex member 2","termid":"PBO:0048944"}


id: PBO:0079978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 16","termid":"PBO:0079978"}


id: PBO:0003751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EST1 family protein (predicted)","termid":"PBO:0003751"}


id: PBO:0044346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 30","termid":"PBO:0044346"}


id: MONDO:0007277
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cataract-aberrant oral frenula-growth delay syndrome is characterized by cataracts and short stature associated with variable anomalies, including aberrant oral frenula, a characteristic facial appearance (posteriorly angulated ears, upslanting palpebral fissures, small nose, ptosis and epicanthal folds) cavernous hemangiomas and hernias. It has been described in a mother and her two children. It is transmitted as an autosomal dominant trait.","definition_xrefs":["Orphanet:1373"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"cataract-aberrant oral frenula-growth delay syndrome","secondary_identifiers":["MEDGEN:350520","UMLS:C1861835","MESH:C536691","GARD:5554","SCTID:715988005","OMIM:115645"],"synonyms":[{"name":"Wellesley Carmen French syndrome","type":"related"},{"name":"Wellesley-Carman-French syndrome","type":"exact"},{"name":"cataract, aberrant oral frenula, and growth retardation","type":"related"},{"name":"cataracts, aberrant oral frenula, and growth retardation","type":"related"}],"termid":"MONDO:0007277","xrefs":{"Monarch":{"xref_id":"0007277"}}}


id: GO:0035898
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of parathyroid hormone into the circulatory system.","definition_xrefs":["PMID:21164021","GOC:cjm","PMID:12171519"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endocrine hormone secretion","termid":"GO:0060986"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"parathyroid hormone secretion","synonyms":[{"name":"PTH secretion","type":"exact"},{"name":"parathormone secretion","type":"exact"},{"name":"parathyrin secretion","type":"exact"}],"termid":"GO:0035898"}


id: MONDO:0010491
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"partial duplication of the short arm of chromosome X","termid":"MONDO:0017009"},{"relation_name":"is_a","term_name":"X-linked disease","termid":"MONDO:0000425"},{"relation_name":"is_a","term_name":"partial duplication of the long arm of chromosome X","termid":"MONDO:0017010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-linked acrogigantism due to Xq26 microduplication","secondary_identifiers":["SCTID:768472004","UMLS:C3891556","GARD:18433","OMIM:300942","MEDGEN:856021","Orphanet:448372"],"synonyms":[{"name":"X-LAG (X-linked acrogigantism) due to dup(X)q(26)","type":"exact"},{"name":"X-linked acrogigantism","type":"related"},{"name":"chromosome Xq26 microduplication syndrome","type":"related"},{"name":"chromosome Xq26.3 DUPLICATION syndrome","type":"related"},{"name":"chromosome xq26.3 duplication syndrome, X-linked dominant","type":"exact"},{"name":"familial infantile gigantism due to Xq26 microduplication","type":"exact"},{"name":"familial infantile gigantism due to dup(X)q(26)","type":"exact"}],"termid":"MONDO:0010491","xrefs":{"Monarch":{"xref_id":"0010491"}}}


id: MONDO:0037716
data:
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id: PBO:0113029
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id: GO:0099540
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id: PBO:0056370
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id: GO:1905368
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id: PBO:0090571
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id: MONDO:0019118
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id: MONDO:0034668
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id: PBO:0087742
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id: PBO:0087604
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id: GO:0042208
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id: GO:0000793
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id: MONDO:0003919
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete inherited metabolic disorder (obsolete MONDO:0003919)","termid":"MONDO:0003919","xrefs":{"Monarch":{"xref_id":"0003919"}}}


id: GO:0046513
data:
  {"annotated_genes":["SJAG_01219","SJAG_02085","SJAG_02842","SJAG_04178","SJAG_02305","SJAG_01057"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76049,78740,79982,80797,80960,110798],"is_not":false,"summary":null,"term":"GO:0046513"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ceramides, any N-acylated sphingoid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ceramide metabolic process","termid":"GO:0006672"},{"relation_name":"is_a","term_name":"sphingolipid biosynthetic process","termid":"GO:0030148"},{"relation_name":"is_a","term_name":"amide biosynthetic process","termid":"GO:0043604"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01057":null,"SJAG_01219":null,"SJAG_02085":null,"SJAG_02305":null,"SJAG_02842":null,"SJAG_04178":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"ceramide biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"ceramide anabolism","type":"exact"},{"name":"ceramide biosynthesis","type":"exact"},{"name":"ceramide formation","type":"exact"},{"name":"ceramide synthesis","type":"exact"}],"termid":"GO:0046513","terms_by_termid":{"GO:0046513":null}}


id: GO:0015912
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of short-chain fatty acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A short-chain fatty acid has an aliphatic tail containing fewer than 6 carbons.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid transport","termid":"GO:0015908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"short-chain fatty acid transport","termid":"GO:0015912"}


id: PBO:0074932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 99","termid":"PBO:0074932"}


id: GO:1902561
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an origin recognition complex.","definition_xrefs":["GOC:TermGenie","PMID:11717425"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"origin recognition complex assembly","synonyms":[{"name":"ORC assembly","type":"exact"},{"name":"ORC formation","type":"exact"},{"name":"origin of replication recognition complex assembly","type":"exact"},{"name":"origin of replication recognition complex formation","type":"exact"},{"name":"origin recognition complex formation","type":"exact"}],"termid":"GO:1902561"}


id: FYPO:0004739
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, or morphology of the actin cytoskeleton is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal actin cytoskeleton during vegetative growth","synonyms":[{"name":"normal actin cytoskeleton during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004739"}


id: PBO:0000295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein (predicted)","termid":"PBO:0000295"}


id: GO:0052633
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: cis-aconitate + H2O = isocitrate.","definition_xrefs":["MetaCyc:ACONITATEHYDR-RXN","GOC:pde","EC:4.2.1.3","GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete isocitrate hydro-lyase (cis-aconitate-forming) activity (obsolete GO:0052633)","synonyms":[{"name":"aconitate hydratase activity","type":"broad"},{"name":"cis-aconitase activity","type":"broad"},{"name":"citrate hydro-lyase activity","type":"broad"},{"name":"citrate(isocitrate) hydro-lyase (cis-aconitate-forming)","type":"broad"},{"name":"citrate(isocitrate) hydro-lyase activity","type":"broad"}],"termid":"GO:0052633"}


id: PATO:0002075
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An avidity which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"avidity","termid":"PATO:0002073"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased avidity","termid":"PATO:0002075"}


id: PBO:0045506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dystonin","termid":"PBO:0045506"}


id: GO:0090590
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + D-glucosamine(out) = protein histidine + glucosamine-6-phosphate(in).","definition_xrefs":["PMID:8246840"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-N(PI)-phosphohistidine-sugar phosphotransferase activity","termid":"GO:0008982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0022857","GO:0016740","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"protein-N(PI)-phosphohistidine-D-glucosamine phosphotransferase system transporter activity","termid":"GO:0090590"}


id: GO:1904313
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methamphetamine hydrochloride stimulus.","definition_xrefs":["GOC:TermGenie","PMID:22174933","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to amine","termid":"GO:0014075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to methamphetamine hydrochloride","synonyms":[{"name":"response to methamphetamine HCL","type":"exact"}],"termid":"GO:1904313"}


id: PBO:0000631
data:
  {"annotation_feature_type":"gene","cv_name":"genome_org","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"co-transcribed with divergently orientated functionally related gene","termid":"PBO:0000631"}


id: GO:0043897
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains.","definition_xrefs":["EC:3.2.1.133"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0016798"],"is_obsolete":false,"name":"glucan 1,4-alpha-maltohydrolase activity","secondary_identifiers":["MetaCyc:3.2.1.133-RXN"],"synonyms":[{"name":"1,4-alpha-D-glucan alpha-maltohydrolase activity","type":"exact"},{"name":"glucan-1,4-alpha-maltohydrolase activity","type":"exact"},{"name":"maltogenic alpha-amylase activity","type":"exact"}],"termid":"GO:0043897"}


id: GO:1903403
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of renal phosphate excretion.","definition_xrefs":["PMID:8700837","GOC:pm","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of renal phosphate excretion","termid":"GO:1903402"},{"relation_name":"negatively_regulates","term_name":"renal phosphate excretion","termid":"GO:0044722"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of renal phosphate excretion","synonyms":[{"name":"down regulation of renal phosphate excretion","type":"exact"},{"name":"down regulation of renal phosphate ion excretion","type":"exact"},{"name":"down-regulation of renal phosphate excretion","type":"exact"},{"name":"down-regulation of renal phosphate ion excretion","type":"exact"},{"name":"downregulation of renal phosphate excretion","type":"exact"},{"name":"downregulation of renal phosphate ion excretion","type":"exact"},{"name":"inhibition of renal phosphate excretion","type":"narrow"},{"name":"inhibition of renal phosphate ion excretion","type":"narrow"},{"name":"negative regulation of renal phosphate ion excretion","type":"exact"}],"termid":"GO:1903403"}


id: PBO:0116990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GALM antisense RNA 1","termid":"PBO:0116990"}


id: GO:0097022
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a lymphocyte within the lymphatic system into a lymph node, and its subsequent positioning within defined functional compartments such as sites of cell activation by antigen.","definition_xrefs":["PMID:18379575","GOC:BHF","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte migration into lymphoid organs","termid":"GO:0097021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lymphocyte migration into lymph node","synonyms":[{"name":"lymphocyte homing","type":"exact"}],"termid":"GO:0097022"}


id: GO:0120157
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein kinase complex that is required for the establishment of a cell polarity axis during the cell division cycle. Binds directly to activated CDC42 GTPase and is required for orchestrating a cellular gradient of CDC42. In S. cerevisiae components are: BEM1, CDC24 and CLA4; from worms to vertebrates it contains a PAR6 protein, PAR3 protein and an atypical PKC.","definition_xrefs":["PMID:18005931","PMID:11113154","PMID:28682236","GOC:lnp","PMID:22500799"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine/threonine protein kinase complex","termid":"GO:1902554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"PAR polarity complex","synonyms":[{"name":"BEM1-CDC24-CLA4 complex","type":"narrow"},{"name":"Cdc42p GEF-PAK complex","type":"narrow"},{"name":"PAR3-PAR6-atypical PKC","type":"narrow"},{"name":"PAR3/PAR6/aPKC","type":"narrow"},{"name":"PAR6-PAR3-aPKC complex","type":"narrow"},{"name":"apical polarity complex","type":"exact"}],"termid":"GO:0120157"}


id: PBO:0017415
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-derived_into","termid":"PBO:0017415"}


id: GO:0043401
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals mediated by a steroid hormone binding to a receptor.","definition_xrefs":["PMID:12606724"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone-mediated signaling pathway","termid":"GO:0009755"},{"relation_name":"part_of","term_name":"cellular response to steroid hormone stimulus","termid":"GO:0071383"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"steroid hormone receptor signaling pathway","synonyms":[{"name":"steroid hormone mediated signalling","type":"exact"},{"name":"steroid hormone-mediated signaling pathway","type":"exact"}],"termid":"GO:0043401"}


id: GO:0009159
data:
  {"annotated_genes":["SJAG_01055","SJAG_01974"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70647,77665],"is_not":false,"summary":null,"term":"GO:0009159"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate catabolic process","termid":"GO:0009125"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01055":null,"SJAG_01974":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"deoxyribonucleoside monophosphate catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000117":null},"synonyms":[{"name":"deoxyribonucleoside monophosphate breakdown","type":"exact"},{"name":"deoxyribonucleoside monophosphate catabolism","type":"exact"},{"name":"deoxyribonucleoside monophosphate degradation","type":"exact"}],"termid":"GO:0009159","terms_by_termid":{"GO:0009159":null}}


id: GO:0050371
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-tyrosine + H2O = NH4 + phenol + pyruvate.","definition_xrefs":["EC:4.1.99.2","RHEA:21704"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-carbon lyase activity","termid":"GO:0016830"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"tyrosine phenol-lyase activity","secondary_identifiers":["MetaCyc:TYROSINE-PHENOL-LYASE-RXN","KEGG_REACTION:R00728"],"synonyms":[{"name":"L-tyrosine phenol-lyase (deaminating)","type":"related"},{"name":"L-tyrosine phenol-lyase (deaminating; pyruvate-forming)","type":"related"},{"name":"beta-tyrosinase activity","type":"related"}],"termid":"GO:0050371"}


id: MONDO:1012284
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Stomach ulcer that occurs in pigs.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stomach ulcer, non-human animal","termid":"MONDO:1011662"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stomach ulcer, pig","secondary_identifiers":["OMIA:001027-9823"],"termid":"MONDO:1012284","xrefs":{"Monarch":{"xref_id":"1012284"}}}


id: MONDO:0018560
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete anterior urethral valve (obsolete MONDO:0018560)","secondary_identifiers":["Orphanet:435372","SCTID:253907008"],"termid":"MONDO:0018560","xrefs":{"Monarch":{"xref_id":"0018560"}}}


id: PBO:0085426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Polo-like kinase essential for mitotic cell cycle; controls targeting, activation of Rho1p at cell division site via Rho1p guanine nucleotide exchange factors; regulates shape of nucleus, expansion of nuclear envelope during mitosis; implicated in cell divisions in telomerase-negative strains through adaptation to DNA damage, which allows bypass of cell cycle arrest and contributes senescence-specific genome instability; human homologs PLK1, PLK3 can each complement cdc5 thermosensitive mutants","termid":"PBO:0085426"}


id: PBO:0070781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 11","termid":"PBO:0070781"}


id: FYPO:0007421
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which transcription occurs to a greater extent than normal in telomeric regions during G0 phase. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased transcription","termid":"FYPO:0002875"},{"relation_name":"is_a","term_name":"abnormal transcription at telomere","termid":"FYPO:0007420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0000294","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased transcription at telomere during G0","synonyms":[{"name":"increased telomeric transcription during G0","type":"exact"},{"name":"increased transcription at telomere during cell quiescence","type":"exact"},{"name":"increased transcription at telomere during quiescence","type":"exact"},{"name":"increased transcription from telomere during G0","type":"exact"}],"termid":"FYPO:0007421"}


id: PBO:0065154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRMT5 divergent transcript","termid":"PBO:0065154"}


id: PBO:0031558
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_catalytic_activity","termid":"PBO:0031558"}


id: MONDO:0011917
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any focal segmental glomerulosclerosis in which the cause of the disease is a mutation in the CD2AP gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"focal segmental glomerulosclerosis 3, susceptibility to","secondary_identifiers":["DOID:0112245","MEDGEN:335850","UMLS:C1842982","OMIM:607832"],"synonyms":[{"name":"CD2AP focal segmental glomerulosclerosis","type":"exact"},{"name":"FSGS3","type":"related"},{"name":"focal segmental glomerulosclerosis 3, susceptibility to","type":"exact"},{"name":"focal segmental glomerulosclerosis caused by mutation in CD2AP","type":"exact"},{"name":"glomerulosclerosis, focal segmental, 3","type":"exact"},{"name":"glomerulosclerosis, focal segmental, 3, susceptibility to","type":"related"},{"name":"susceptibility to focal segmental glomerulosclerosis 3","type":"related"}],"termid":"MONDO:0011917","xrefs":{"Monarch":{"xref_id":"0011917"}}}


id: PBO:0000543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA helicase Rdh54","termid":"PBO:0000543"}


id: MONDO:1012412
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"type 2 polysaccharide storage myopathy, non-human animal","termid":"MONDO:1011801"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"type 2 polysaccharide storage myopathy, horse","secondary_identifiers":["OMIA:001537-9796"],"termid":"MONDO:1012412","xrefs":{"Monarch":{"xref_id":"1012412"}}}


id: MONDO:0006272
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A low grade, late-metastasizing variant of fibrosarcoma characterized by alternating fibrous and myxoid areas and a whorling growth pattern. The neoplastic cells have a spindle morphology, and lack hyperchromasia or significant nuclear atypia. Approximately 40% of cases show the focal presence of collagen rosettes. A t(7;16)(q33;p11) translocation has been identified in the majority of cases, associated with the presence of FUS-CREB3L2 fusion protein. Rare cases carry the t(11;16)(p11;p11) translocation which is associated with the presence of the FUS-CREB3L1 fusion protein.","definition_xrefs":["NCIT:C45202"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibrosarcoma","termid":"MONDO:0005164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"low grade fibromyxoid sarcoma","secondary_identifiers":["ICD9:171.9","MEDGEN:224814","SCTID:404088004","UMLS:C1275282","ONCOTREE:LGFMS"],"synonyms":[{"name":"low grade fibromyxoid sarcoma","type":"exact"},{"name":"low-grade fibromyxoid sarcoma","type":"related"}],"termid":"MONDO:0006272","xrefs":{"Monarch":{"xref_id":"0006272"}}}


id: PBO:0050065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"helicase like transcription factor","termid":"PBO:0050065"}


id: PBO:0087757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the tRNA splicing endonuclease; tRNA splicing endonuclease (Sen complex) is composed of Sen2p, Sen15p, Sen34p, and Sen54p; Sen complex also cleaves the CBP1 mRNA at the mitochondrial surface; Sen2p contains the active site for tRNA 5' splice site cleavage and has similarity to Sen34p and to Archaeal tRNA splicing endonuclease;","termid":"PBO:0087757"}


id: MONDO:0100476
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing acquired partial lipodystrophy.","definition_xrefs":["MONDO:patterns/inherited_susceptibility"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipodystrophy, partial, acquired, susceptibility to","secondary_identifiers":["MEDGEN:854363","UMLS:C3887501","OMIM:608709"],"synonyms":[{"name":"APLD, susceptibility to","type":"exact"},{"name":"barraquer-simons syndrome","type":"exact"},{"name":"lipodystrophy, cephalothoracic type","type":"exact"},{"name":"lipodystrophy, partial, acquired, susceptibility","type":"exact"},{"name":"lipodystrophy, partial, progressive","type":"exact"}],"termid":"MONDO:0100476","xrefs":{"Monarch":{"xref_id":"0100476"}}}


id: PBO:0029056
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-large_vacuoles_present_in_decreased_numbers_during_vegetative_growth","termid":"PBO:0029056"}


id: MONDO:0012234
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete LFS3 (obsolete MONDO:0012234)","termid":"MONDO:0012234","xrefs":{"Monarch":{"xref_id":"0012234"}}}


id: PBO:0050989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IFT74 antisense RNA 1","termid":"PBO:0050989"}


id: PR:O14087
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rim1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14087"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"single-stranded DNA-binding protein rim1, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2F3.04c","synonyms":[{"name":"Spom972h-rim1","type":"exact"},{"name":"mitochondrial ssDNA-binding protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14087"}


id: MONDO:0002903
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by the failure to use developmentally expected speech sounds that are appropriate for the individual's age (i.e., the individual makes errors in sound production or use or omits sounds such as final consonants).","definition_xrefs":["NCIT:C92564"],"direct_ancestors":[{"relation_name":"is_a","term_name":"speech disorder","termid":"MONDO:0004730"},{"relation_name":"is_a","term_name":"language disorder","termid":"MONDO:0004750"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"articulation disorder","secondary_identifiers":["MEDGEN:2081","ICD9:315.39","MESH:D001184","SCTID:386701004","DOID:4186","UMLS:C0003910"],"synonyms":[{"name":"articulation impairment","type":"exact"},{"name":"phonological disorder","type":"exact"}],"termid":"MONDO:0002903","xrefs":{"Monarch":{"xref_id":"0002903"}}}


id: PBO:0067366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 466, pseudogene","termid":"PBO:0067366"}


id: GO:0103055
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: gibberellin A15 + 2-oxoglutarate + O2 = gibberellin A24 + succinate + carbon dioxide + H2O.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete gibberellin A15, 2-oxoglutarate:oxygen oxidoreductase activity (obsolete GO:0103055)","termid":"GO:0103055"}


id: MONDO:0019851
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An instance of primary ovarian failure that is acquired during the lifetime of the individual.","definition_xrefs":["MONDO:patterns/acquired"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary endocrine growth disease","termid":"MONDO:0015514"},{"relation_name":"excluded_subClassOf","term_name":"obsolete rare endocrine growth disease (obsolete MONDO:0019590)","termid":"MONDO:0019590"},{"relation_name":"is_a","term_name":"primary ovarian failure","termid":"MONDO:0005387"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acquired primary ovarian failure","secondary_identifiers":["GARD:19293","UMLS:C5925051","MEDGEN:1863413","Orphanet:95709","SCTID:717954003"],"synonyms":[{"name":"acquired premature ovarian failure","type":"related"},{"name":"acquired primary ovarian failure","type":"exact"}],"termid":"MONDO:0019851","xrefs":{"Monarch":{"xref_id":"0019851"}}}


